Loci ID	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
chr19.35532717.-	chr19	35532717	35532718	-	0	NA	"5' UTR (NM_182983, exon 2 of 13)"	"5' UTR (NM_182983, exon 2 of 13)"	-1307	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr8.86574402.+	chr8	86574402	86574403	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	340	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr5.176292931.+	chr5	176292931	176292932	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33402	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr19.44489464.+	chr19	44489464	44489465	+	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	1142	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr14.90967273.+	chr14	90967273	90967274	+	0	NA	Intergenic	Intergenic	45699	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	-	long intergenic non-protein coding RNA 642	miscRNA
chr2.115328229.+	chr2	115328229	115328230	+	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	109049	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr1.52460255.+	chr1	52460255	52460256	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3819	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	"RAB3B, member RAS oncogene family"	protein-coding
chr2.240980335.+	chr2	240980335	240980336	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2064	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr13.77954609.-	chr13	77954609	77954610	-	0	NA	Intergenic	AluSc|SINE|Alu	53432	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr9.35846394.+	chr9	35846394	35846395	+	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	-13877	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr1.114299604.-	chr1	114299604	114299605	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2173	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr16.1034939.-	chr16	1034939	1034940	-	0	NA	"exon (NM_014587, exon 3 of 3)"	"exon (NM_014587, exon 3 of 3)"	-3131	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
chr17.810096.+	chr17	810096	810097	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42745	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr6.141000391.+	chr6	141000391	141000392	+	0	NA	Intergenic	AluY|SINE|Alu	-4560	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr5.178657974.+	chr5	178657974	178657975	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114457	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr4.48016938.-	chr4	48016938	48016939	-	0	NA	Intergenic	AluY|SINE|Alu	1853	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr2.241540985.+	chr2	241540985	241540986	+	0	NA	Intergenic	Intergenic	-3840	NM_001195382	2859	Hs.112218	NM_001195381	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
chr9.14830648.+	chr9	14830648	14830649	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51117	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr4.1626822.-	chr4	1626822	1626823	-	0	NA	Intergenic	CpG	-58896	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr11.61519952.+	chr11	61519952	61519953	+	0	NA	promoter-TSS (NM_001127392)	promoter-TSS (NM_001127392)	-169	NM_001127392	745	Hs.473109	NM_001127392	ENSG00000124920	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
chr18.75578036.-	chr18	75578036	75578037	-	0	NA	Intergenic	L1MD2|LINE|L1	-616028	NM_001480	2587	Hs.272191	NM_001480		GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
chr14.20778645.+	chr14	20778645	20778646	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4492	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr1.24829700.-	chr1	24829700	24829701	-	0	NA	promoter-TSS (NR_045407)	promoter-TSS (NR_045407)	-313	NM_001251981	11123	Hs.737226	NM_001251977	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
chr10.135017603.-	chr10	135017603	135017604	-	0	NA	"intron (NM_152643, intron 17 of 29)"	"intron (NM_152643, intron 17 of 29)"	26175	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr12.116724236.-	chr12	116724236	116724237	-	0	NA	Intergenic	AluY|SINE|Alu	9245	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr6.74964955.+	chr6	74964955	74964956	+	0	NA	Intergenic	SVA_C|Other|Other	559441	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr7.1798898.-	chr7	1798898	1798899	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50100	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr14.104181976.-	chr14	104181976	104181977	-	0	NA	promoter-TSS (NM_001198953)	promoter-TSS (NM_001198953)	105	NM_024071	79038	Hs.592322	NM_001198953	ENSG00000100711	ZFYVE21	ZF21	"zinc finger, FYVE domain containing 21"	protein-coding
chr18.66365977.-	chr18	66365977	66365978	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16376	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr3.4664353.+	chr3	4664353	4664354	+	0	NA	"intron (NM_002222, intron 4 of 57)"	AluSc|SINE|Alu	128921	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	miscRNA
chr16.2054080.+	chr16	2054080	2054081	+	0	NA	"intron (NM_178167, intron 3 of 13)"	CpG	5742	NM_178167	90850	Hs.343828	NM_178167	ENSG00000167962	ZNF598	-	zinc finger protein 598	protein-coding
chr10.24476786.+	chr10	24476786	24476787	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20934	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr1.108113224.+	chr1	108113224	108113225	+	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	117902	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr1.58939018.-	chr1	58939018	58939019	-	0	NA	Intergenic	AluY|SINE|Alu	-73428	NM_145243	115209	Hs.425769	NM_145243	ENSG00000162600	OMA1	2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1	OMA1 zinc metallopeptidase homolog (S. cerevisiae)	protein-coding
chr11.5315843.-	chr11	5315843	5315844	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7333	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr8.91618525.-	chr8	91618525	91618526	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-39608	NM_001146273	169200	Hs.737401	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
chr7.532158.+	chr7	532158	532159	+	0	NA	Intergenic	Intergenic	27323	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr2.198058497.-	chr2	198058497	198058498	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117024	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr11.850795.-	chr11	850795	850796	-	0	NA	"intron (NM_001025235, intron 3 of 8)"	CpG-3678	-6349	NM_001025237	7106	Hs.654836	NM_001025234	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
chr11.101885001.-	chr11	101885001	101885002	-	0	NA	Intergenic	AluY|SINE|Alu	33168	NM_001195005	85016	Hs.98328	NM_001195005	ENSG00000137691	C11orf70	-	chromosome 11 open reading frame 70	protein-coding
chr14.90540085.+	chr14	90540085	90540086	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSx|SINE|Alu	11977	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr2.175518194.-	chr2	175518194	175518195	-	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	18887	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr7.821289.+	chr7	821289	821290	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33905	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr9.14830732.+	chr9	14830732	14830733	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51201	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr18.70912388.+	chr18	70912388	70912389	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19345	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr17.1133366.+	chr17	1133366	1133367	+	0	NA	Intergenic	CpG	-40492	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr3.32863301.-	chr3	32863301	32863302	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3791	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr3.52279903.-	chr3	52279903	52279904	-	0	NA	promoter-TSS (NM_144641)	promoter-TSS (NM_144641)	-94	NM_144641	132160	Hs.731914	NM_001122870	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	"protein phosphatase, Mg2+/Mn2+ dependent, 1M"	protein-coding
chr14.83280578.+	chr14	83280578	83280579	+	0	NA	Intergenic	SVA_D|Other|Other	-1280373	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr8.65493647.-	chr8	65493647	65493648	-	0	NA	"exon (NM_152414, exon 1 of 1)"	"exon (NM_152414, exon 1 of 1)"	-852	NM_152414	27319	Hs.743680	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|CAGL85|TNRC20	"basic helix-loop-helix family, member e22"	protein-coding
chr15.23086550.-	chr15	23086550	23086551	-	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	114	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr7.124427234.-	chr7	124427234	124427235	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3630	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr8.141559339.+	chr8	141559339	141559340	+	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	37258	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr5.45695883.+	chr5	45695883	45695884	+	0	NA	"exon (NM_021072, exon 1 of 8)"	"exon (NM_021072, exon 1 of 8)"	337	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr7.128578981.+	chr7	128578981	128578982	+	0	NA	"intron (NM_032643, intron 1 of 8)"	"intron (NM_032643, intron 1 of 8)"	710	NM_032643	3663	Hs.521181	NM_001098627	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
chr1.156575245.-	chr1	156575245	156575246	-	0	NA	Intergenic	AluSx|SINE|Alu	3966	NM_015590	54865	Hs.193832	NM_017725	ENSG00000160818	GPATCH4	GPATC4	G patch domain containing 4	protein-coding
chr11.100596583.-	chr11	100596583	100596584	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38176	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr14.90254566.-	chr14	90254566	90254567	-	0	NA	Intergenic	AluSx|SINE|Alu	-166523	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr8.26241058.-	chr8	26241058	26241059	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-535	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr14.101892663.+	chr14	101892663	101892664	+	0	NA	Intergenic	AluY|SINE|Alu	129350	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr14.34667881.+	chr14	34667881	34667882	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247597	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr21.44840024.+	chr21	44840024	44840025	+	0	NA	"intron (NM_173354, intron 8 of 13)"	"intron (NM_173354, intron 8 of 13)"	6978	NM_173354	150094	Hs.700423	NM_173354	ENSG00000142178	SIK1	MSK|SIK|SNF1LK	salt-inducible kinase 1	protein-coding
chr19.4141910.-	chr19	4141910	4141911	-	0	NA	Intergenic	AluY|SINE|Alu	11688	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr14.21542603.+	chr14	21542603	21542604	+	0	NA	"exon (NM_018071, exon 3 of 24)"	"exon (NM_018071, exon 3 of 24)"	4076	NM_018071	55701	Hs.35125	NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding
chr22.51010968.+	chr22	51010968	51010969	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5538	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr18.23534137.+	chr18	23534137	23534138	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	136474	NM_001007559	6760	Hs.129261	NM_001007559	ENSG00000141380	SS18	SSXT|SYT	"synovial sarcoma translocation, chromosome 18"	protein-coding
chr19.2400830.+	chr19	2400830	2400831	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11046	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr12.133328231.+	chr12	133328231	133328232	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10220	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr1.42522908.-	chr1	42522908	42522909	-	0	NA	Intergenic	AluY|SINE|Alu	21312	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr12.132389090.+	chr12	132389090	132389091	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9811	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr8.26241072.-	chr8	26241072	26241073	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-549	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr9.425375.-	chr9	425375	425376	-	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	44919	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr9.137588849.+	chr9	137588849	137588850	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55197	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chrX.136003851.+	chrX	136003851	136003852	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-40912	NM_001164803	27316	Hs.710162	NM_001164803	ENSG00000147274	RBMX	HNRPG|RBMXP1|RBMXRT|RNMX|hnRNP-G	"RNA binding motif protein, X-linked"	protein-coding
chr20.35167621.+	chr20	35167621	35167622	+	0	NA	Intergenic	AluY|SINE|Alu	-2266	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr8.60407793.+	chr8	60407793	60407794	+	0	NA	Intergenic	L1PA7|LINE|L1	-376026	NM_014729	9760	Hs.634856	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection-associated high mobility group box	protein-coding
chr17.76836412.-	chr17	76836412	76836413	-	0	NA	"intron (NM_025090, intron 1 of 19)"	CpG	-557	NM_025090	57602	Hs.464243	NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
chr1.9793559.+	chr1	9793559	9793560	+	0	NA	"exon (NM_001009566, exon 16 of 19)"	"exon (NM_001009566, exon 16 of 19)"	-78915	NR_027045	644997	Hs.568595	NM_001045478	ENSG00000179840	C1orf200	-	chromosome 1 open reading frame 200	miscRNA
chr1.151742007.+	chr1	151742007	151742008	+	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	2876	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr5.150603261.-	chr5	150603261	150603262	-	0	NA	"intron (NM_015621, intron 1 of 8)"	CpG	-393	NM_015621	26112	Hs.655336	NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
chr1.6051336.+	chr1	6051336	6051337	+	0	NA	"intron (NM_015102, intron 1 of 29)"	"intron (NM_015102, intron 1 of 29)"	-1022	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr12.32064887.+	chr12	32064887	32064888	+	0	NA	Intergenic	AluY|SINE|Alu	-47466	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr20.62111451.+	chr20	62111451	62111452	+	0	NA	Intergenic	CpG	-7458	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr6.46742426.-	chr6	46742426	46742427	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18668	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr5.176730618.+	chr5	176730618	176730619	+	0	NA	promoter-TSS (NM_013237)	promoter-TSS (NM_013237)	126	NM_001031677	53917	Hs.16258	NM_001031677	ENSG00000169228	RAB24	-	"RAB24, member RAS oncogene family"	protein-coding
chr20.23065616.-	chr20	23065616	23065617	-	0	NA	"exon (NM_012072, exon 1 of 2)"	"exon (NM_012072, exon 1 of 2)"	-1361	NM_012072	22918	Hs.97199	NM_012072	ENSG00000125810	CD93	C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1	CD93 molecule	protein-coding
chr16.723798.+	chr16	723798	723799	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2277	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr1.217314044.+	chr1	217314044	217314045	+	0	NA	Intergenic	Intergenic	-2947	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr4.10124780.+	chr4	10124780	10124781	+	0	NA	Intergenic	Intergenic	-6207	NM_017491	9948	Hs.128548	NM_005112	ENSG00000071127	WDR1	AIP1|NORI-1	WD repeat domain 1	protein-coding
chr16.632082.+	chr16	632082	632083	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7275	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr2.230579349.-	chr2	230579349	230579350	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	63	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr19.18180407.+	chr19	18180407	18180408	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17290	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr10.104209670.+	chr10	104209670	104209671	+	0	NA	promoter-TSS (NR_038938)	promoter-TSS (NR_038938)	96	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr9.131293150.+	chr9	131293150	131293151	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21687	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr8.81372758.+	chr8	81372758	81372759	+	0	NA	Intergenic	AluY|SINE|Alu	-25096	NM_001277145	65986	Hs.709604	NM_001105539	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
chr19.3644504.+	chr19	3644504	3644505	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17691	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr22.31744394.-	chr22	31744394	31744395	-	0	NA	Intergenic	AluSp|SINE|Alu	2145	NM_014323	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr17.4435095.-	chr17	4435095	4435096	-	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	-23586	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr17.59482734.+	chr17	59482734	59482735	+	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	5477	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr6.1610260.+	chr6	1610260	1610261	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-421	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr16.67880393.+	chr16	67880393	67880394	+	0	NA	promoter-TSS (NM_005796)	promoter-TSS (NM_005796)	-426	NM_005796	10204	Hs.744185	NM_005796		NUTF2	NTF2|PP15	nuclear transport factor 2	protein-coding
chr17.1226049.-	chr17	1226049	1226050	-	0	NA	Intergenic	Intergenic	-43092	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr19.3810429.-	chr19	3810429	3810430	-	0	NA	"intron (NM_015174, intron 16 of 18)"	"intron (NM_015174, intron 16 of 18)"	8619	NM_002378	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chr14.88199437.-	chr14	88199437	88199438	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260178	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr4.49332361.-	chr4	49332361	49332362	-	0	NA	Intergenic	ACRO1|Satellite|acro	-344096	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr2.159314588.+	chr2	159314588	159314589	+	0	NA	"intron (NM_001005476, intron 1 of 20)"	CpG	1112	NM_001005476	8502	Hs.407580	NM_001005476	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
chr19.1045747.+	chr19	1045747	1045748	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5645	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr7.1116553.-	chr7	1116553	1116554	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	9890	NM_001505	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr6.39156025.-	chr6	39156025	39156026	-	0	NA	TTS (NM_003740)	TTS (NM_003740)	-41226	NM_003740	8645	Hs.444448	NM_003740	ENSG00000164626	KCNK5	K2p5.1|TASK-2|TASK2	"potassium channel, subfamily K, member 5"	protein-coding
chr2.10424831.+	chr2	10424831	10424832	+	0	NA	Intergenic	Intergenic	-18199	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr7.148597576.+	chr7	148597576	148597577	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16135	NM_001203247	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr19.2525152.+	chr19	2525152	2525153	+	0	NA	"intron (NM_052847, intron 3 of 4)"	CpG	49029	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr5.693677.+	chr5	693677	693678	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-167	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr1.24513576.+	chr1	24513576	24513577	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	189	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr19.3429001.-	chr19	3429001	3429002	-	0	NA	"intron (NM_001245005, intron 3 of 9)"	FLAM_C|SINE|Alu	-51539	NM_001136503	284422	Hs.130714	NM_001136503	ENSG00000095932	C19orf77	-	chromosome 19 open reading frame 77	protein-coding
chr11.31560743.+	chr11	31560743	31560744	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29446	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr20.62457906.+	chr20	62457906	62457907	+	0	NA	Intergenic	AluY|SINE|Alu	-21050	NM_025224	140685	Hs.585028	NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
chr1.28703583.+	chr1	28703583	28703584	+	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	7490	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr15.76627358.-	chr15	76627358	76627359	-	0	NA	Intergenic	AluSg|SINE|Alu	1789	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr5.180059534.+	chr5	180059534	180059535	+	0	NA	"intron (NM_002020, intron 1 of 29)"	"intron (NM_002020, intron 1 of 29)"	17090	NM_182925	2324	Hs.646917	NM_002020	ENSG00000037280	FLT4	FLT41|LMPH1A|PCL|VEGFR3	fms-related tyrosine kinase 4	protein-coding
chr16.88979671.-	chr16	88979671	88979672	-	0	NA	"intron (NM_005187, intron 1 of 11)"	MLT1H|LTR|ERVL-MaLR	-27937	NM_175931	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr6.90432421.-	chr6	90432421	90432422	-	0	NA	"intron (NM_014611, intron 40 of 101)"	AluSq2|SINE|Alu	83947	NM_020466	57226	Hs.177275	NM_020466	ENSG00000083099	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
chr8.142690411.+	chr8	142690411	142690412	+	0	NA	Intergenic	Intergenic	-173081	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr7.155246418.+	chr7	155246418	155246419	+	0	NA	Intergenic	CpG	-4406	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr11.71702900.+	chr11	71702900	71702901	+	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	-7058	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr7.1004360.-	chr7	1004360	1004361	-	0	NA	TTS (NM_001031617)	TTS (NM_001031617)	10071	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr11.47284123.-	chr11	47284123	47284124	-	0	NA	"intron (NM_001130102, intron 6 of 8)"	AluSz|SINE|Alu	-4655	NM_005693	10062	Hs.438863	NM_001130101	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	"nuclear receptor subfamily 1, group H, member 3"	protein-coding
chr17.72855807.-	chr17	72855807	72855808	-	0	NA	"intron (NM_000835, intron 1 of 12)"	CpG	-200	NM_000835	2905	Hs.436980	NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	"glutamate receptor, ionotropic, N-methyl D-aspartate 2C"	protein-coding
chr8.52244221.-	chr8	52244221	52244222	-	0	NA	"intron (NM_144651, intron 21 of 22)"	L1PBa1|LINE|L1	-477784	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr9.38424362.+	chr9	38424362	38424363	+	0	NA	promoter-TSS (NM_001007563)	promoter-TSS (NM_001007563)	82	NM_001007563	347252	Hs.349705	NM_001007563	ENSG00000137142	IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin-like growth factor binding protein-like 1	protein-coding
chr8.117309713.+	chr8	117309713	117309714	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27584	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr21.32775121.+	chr21	32775121	32775122	+	0	NA	"intron (NM_003253, intron 2 of 28)"	AluY|SINE|Alu	156169	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr4.185174234.+	chr4	185174234	185174235	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35120	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr22.50580053.+	chr22	50580053	50580054	+	0	NA	"intron (NM_001164104, intron 15 of 25)"	AluJb|SINE|Alu	-5431	NM_001164106	54456	Hs.62880	NM_001164104	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	"Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)"	protein-coding
chr3.48117715.+	chr3	48117715	48117716	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13054	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr10.33662146.+	chr10	33662146	33662147	+	0	NA	Intergenic	AluSg|SINE|Alu	-38313	NM_001024629	8829	Hs.653996	NM_001024628	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
chr16.85371295.+	chr16	85371295	85371296	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-31364	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr7.157219871.-	chr7	157219871	157219872	-	0	NA	Intergenic	Intergenic	-90160	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr2.39384041.-	chr2	39384041	39384042	-	0	NA	Intergenic	AluSx1|SINE|Alu	36437	NM_005633	6654	Hs.732497	NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4	son of sevenless homolog 1 (Drosophila)	protein-coding
chr2.29662845.+	chr2	29662845	29662846	+	0	NA	"intron (NM_004304, intron 4 of 28)"	AluSx1|SINE|Alu	324537	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr20.31565628.+	chr20	31565628	31565629	+	0	NA	Intergenic	Intergenic	26611	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr5.86907766.-	chr5	86907766	86907767	-	0	NA	Intergenic	AluY|SINE|Alu	198916	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr11.18743359.-	chr11	18743359	18743360	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4418	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chrX.117828384.-	chrX	117828384	117828385	-	0	NA	Intergenic	AluSx|SINE|Alu	33175	NM_001560	3597	Hs.496646	NM_001560	ENSG00000131724	IL13RA1	CD213A1|IL-13Ra|NR4	"interleukin 13 receptor, alpha 1"	protein-coding
chr8.126398046.+	chr8	126398046	126398047	+	0	NA	Intergenic	Intergenic	-44517	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr5.7289476.+	chr5	7289476	7289477	+	0	NA	Intergenic	AluSx1|SINE|Alu	17351	NR_033906	442132	Hs.727388	NM_001034846		LOC442132	-	golgin A6 family-like 1 pseudogene	pseudo
chr16.33293935.+	chr16	33293935	33293936	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4767	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr1.220442964.-	chr1	220442964	220442965	-	0	NA	"intron (NM_012414, intron 1 of 34)"	AluSg|SINE|Alu	1907	NR_001587	6791	Hs.744357	NR_001587		AURKAPS1	AurAps1|STK6P	aurora kinase A pseudogene 1	pseudo
chr2.211494497.-	chr2	211494497	211494498	-	0	NA	"intron (NM_001122634, intron 11 of 27)"	AluY|SINE|Alu	-12202	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	miscRNA
chr3.85080911.+	chr3	85080911	85080912	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72778	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr7.5558072.+	chr7	5558072	5558073	+	0	NA	Intergenic	AluYc|SINE|Alu	-4673	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr7.1286201.-	chr7	1286201	1286202	-	0	NA	Intergenic	CpG	-13547	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr7.5334592.-	chr7	5334592	5334593	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12031	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr19.39811609.+	chr19	39811609	39811610	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-5633	NM_020862	57622	Hs.97860	NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
chr8.107613676.+	chr8	107613676	107613677	+	0	NA	"intron (NM_018002, intron 3 of 15)"	MLT1A|LTR|ERVL-MaLR	-56360	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr2.32100885.-	chr2	32100885	32100886	-	0	NA	"intron (NM_015955, intron 7 of 8)"	AluSz|SINE|Alu	-134813	NM_015955	51072	Hs.444969	NM_001137602	ENSG00000162959	MEMO1	C2orf4|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
chr1.153574086.-	chr1	153574086	153574087	-	0	NA	Intergenic	AluY|SINE|Alu	-11428	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr12.31515535.+	chr12	31515535	31515536	+	0	NA	Intergenic	Intergenic	-36376	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr2.1563077.-	chr2	1563077	1563078	-	0	NA	Intergenic	Intergenic	-144897	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr16.31449022.+	chr16	31449022	31449023	+	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	5326	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr8.128765050.+	chr8	128765050	128765051	+	0	NA	Intergenic	AluSx1|SINE|Alu	16735	NM_002467	4609	Hs.202453	NM_002467	ENSG00000136997	MYC	MRTL|bHLHe39|c-Myc	v-myc myelocytomatosis viral oncogene homolog (avian)	protein-coding
chrX.112142820.+	chrX	112142820	112142821	+	0	NA	Intergenic	AluY|SINE|Alu	-58777	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr6.158981228.-	chr6	158981228	158981229	-	0	NA	"intron (NM_020823, intron 1 of 16)"	CpG	-23760	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
chr22.46326766.+	chr22	46326766	46326767	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46242	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr6.111924225.+	chr6	111924225	111924226	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3252	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr14.93564795.-	chr14	93564795	93564796	-	0	NA	"intron (NM_014216, intron 2 of 10)"	AluY|SINE|Alu	-17468	NM_001142593	3705	Hs.308122	NM_001142593	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
chr7.21498059.+	chr7	21498059	21498060	+	0	NA	"intron (NM_003112, intron 3 of 5)"	AluSx1|SINE|Alu	30370	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr22.49578271.+	chr22	49578271	49578272	+	0	NA	Intergenic	Intergenic	315689	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr19.17347825.+	chr19	17347825	17347826	+	0	NA	"intron (NM_005234, intron 2 of 3)"	"intron (NM_005234, intron 2 of 3)"	8326	NM_005234	2063	Hs.466148	NM_005234		NR2F6	EAR-2|EAR2|ERBAL2	"nuclear receptor subfamily 2, group F, member 6"	protein-coding
chr1.212898498.+	chr1	212898498	212898499	+	0	NA	TTS (NM_001042549)	TTS (NM_001042549)	-25171	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr19.18899649.+	chr19	18899649	18899650	+	0	NA	"exon (NM_000095, exon 6 of 19)"	"exon (NM_000095, exon 6 of 19)"	2465	NM_000095	1311	Hs.1584	NM_000095	ENSG00000105664	COMP	EDM1|EPD1|MED|PSACH|THBS5	cartilage oligomeric matrix protein	protein-coding
chr21.35774229.-	chr21	35774229	35774230	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26480	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr8.141276720.+	chr8	141276720	141276721	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191141	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr8.70843531.-	chr8	70843531	70843532	-	0	NA	Intergenic	AluY|SINE|Alu	96232	NM_030958	81796	Hs.443609	NM_001146008	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15	"solute carrier organic anion transporter family, member 5A1"	protein-coding
chr14.50838444.+	chr14	50838444	50838445	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24173	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr11.2404732.-	chr11	2404732	2404733	-	0	NA	"intron (NM_004356, intron 1 of 7)"	"intron (NM_004356, intron 1 of 7)"	-6185	NM_004356	975	Hs.54457	NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
chr13.88877228.-	chr13	88877228	88877229	-	0	NA	Intergenic	AluY|SINE|Alu	315856	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr9.6608171.-	chr9	6608171	6608172	-	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	-37521	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr6.144816448.-	chr6	144816448	144816449	-	0	NA	"intron (NM_007124, intron 32 of 73)"	LTR12C|LTR|ERV1	-203575	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr10.35559777.-	chr10	35559777	35559778	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	-23824	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr18.11959811.+	chr18	11959811	11959812	+	0	NA	Intergenic	SVA_D|Other|Other	-21616	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr2.224810017.-	chr2	224810017	224810018	-	0	NA	promoter-TSS (NM_020830)	promoter-TSS (NM_020830)	-35	NM_020830	57590	Hs.368359	NM_020830	ENSG00000085449	WDFY1	FENS-1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
chrX.122884637.+	chrX	122884637	122884638	+	0	NA	Intergenic	AluSz|SINE|Alu	-17733	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr21.47485676.-	chr21	47485676	47485677	-	0	NA	Intergenic	Intergenic	32357	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr2.198058466.-	chr2	198058466	198058467	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117055	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr3.15147871.-	chr3	15147871	15147872	-	0	NA	Intergenic	AluSz|SINE|Alu	7216	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr2.237068245.+	chr2	237068245	237068246	+	0	NA	Intergenic	CpG	8407	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr9.26387257.+	chr9	26387257	26387258	+	0	NA	Intergenic	AluY|SINE|Alu	320584	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr6.159416888.+	chr6	159416888	159416889	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4310	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr8.7414150.+	chr8	7414150	7414151	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2476	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr1.11741528.+	chr1	11741528	11741529	+	0	NA	promoter-TSS (NM_006341)	promoter-TSS (NM_006341)	-257	NM_006341	10459	Hs.19400	NM_001127325	ENSG00000116670	MAD2L2	MAD2B|POLZ2|REV7	MAD2 mitotic arrest deficient-like 2 (yeast)	protein-coding
chr7.23086110.+	chr7	23086110	23086111	+	0	NA	Intergenic	SVA_D|Other|Other	-32340	NM_032581	84668	Hs.85603	NM_032581	ENSG00000122591	FAM126A	DRCTNNB1A|HCC|HLD5|HYCC1	"family with sequence similarity 126, member A"	protein-coding
chr6.33500264.+	chr6	33500264	33500265	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47806	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr2.27530852.-	chr2	27530852	27530853	-	0	NA	TTS (NM_187841)	TTS (NM_187841)	-278	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr4.2829378.-	chr4	2829378	2829379	-	0	NA	"exon (NM_001122681, exon 7 of 13)"	"exon (NM_001122681, exon 7 of 13)"	-8837	NM_003023	6452	Hs.167679	NM_001122681	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
chr2.71562031.-	chr2	71562031	71562032	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3146	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr15.90784602.-	chr15	90784602	90784603	-	0	NA	"exon (NM_001013657, exon 4 of 4)"	"exon (NM_001013657, exon 4 of 4)"	-7115	NM_001013657	390637	Hs.304673	NM_001013657	ENSG00000183208	GDPGP1	C15orf58|VTC2	GDP-D-glucose phosphorylase 1	protein-coding
chr21.31598712.+	chr21	31598712	31598713	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10243	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chrX.153657099.+	chrX	153657099	153657100	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	121	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr19.1318385.+	chr19	1318385	1318386	+	0	NA	Intergenic	AluSx1|SINE|Alu	32232	NM_001405	1943	Hs.741510	NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin-A2	protein-coding
chr19.48836649.-	chr19	48836649	48836650	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-8020	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr13.45945055.-	chr13	45945055	45945056	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29575	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr3.128362576.-	chr3	128362576	128362577	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7143	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr19.18180427.+	chr19	18180427	18180428	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17270	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr1.163468697.-	chr1	163468697	163468698	-	0	NA	Intergenic	SVA_A|Other|Other	-176974	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr7.152058372.+	chr7	152058372	152058373	+	0	NA	"intron (NM_170606, intron 1 of 58)"	AluY|SINE|Alu	74718	NM_170606	58508	Hs.647120	NM_170606	ENSG00000055609	MLL3	HALR|KMT2C	myeloid/lymphoid or mixed-lineage leukemia 3	protein-coding
chr19.19594699.-	chr19	19594699	19594700	-	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	-31770	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr16.90054271.+	chr16	90054271	90054272	+	0	NA	"intron (NR_003227, intron 6 of 9)"	"intron (NR_003227, intron 6 of 9)"	-15031	NM_145039	92806	Hs.733302	NM_145039	ENSG00000177946	CENPBD1	-	CENPB DNA-binding domains containing 1	protein-coding
chr12.70156409.-	chr12	70156409	70156410	-	0	NA	"intron (NM_022456, intron 3 of 10)"	AluY|SINE|Alu	16345	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
chr9.14830738.+	chr9	14830738	14830739	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51207	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr5.128196990.-	chr5	128196990	128196991	-	0	NA	Intergenic	AluYk4|SINE|Alu	104220	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr6.167607761.-	chr6	167607761	167607762	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23680	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr11.121079692.+	chr11	121079692	121079693	+	0	NA	Intergenic	AluYa5|SINE|Alu	-83696	NM_006918	6309	Hs.287749	NM_001024956		SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
chr1.211688730.-	chr1	211688730	211688731	-	0	NA	Intergenic	CpG	22471	NM_183059	343035	Hs.632495	NM_001164688	ENSG00000198570	RD3	C1orf36|LCA12	retinal degeneration 3	protein-coding
chrX.53123413.+	chrX	53123413	53123414	+	0	NA	Intergenic	CpG	11871	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr8.145170442.+	chr8	145170442	145170443	+	0	NA	"non-coding (NR_024207, exon 21 of 23)"	"non-coding (NR_024207, exon 21 of 23)"	7813	NR_024207	340390	Hs.98723	NM_032529	ENSG00000179698	KIAA1875	-	KIAA1875	miscRNA
chr8.128328732.-	chr8	128328732	128328733	-	0	NA	Intergenic	Intergenic	99125	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr2.233477513.+	chr2	233477513	233477514	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6746	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr21.43198260.-	chr21	43198260	43198261	-	0	NA	Intergenic	Intergenic	11011	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr6.168655406.-	chr6	168655406	168655407	-	0	NA	Intergenic	MER6A|DNA|TcMar-Tigger	-64996	NM_214462	168002	Hs.673059	NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|RP11-503C24.7|bA503C24.7	"dapper, antagonist of beta-catenin, homolog 2 (Xenopus laevis)"	protein-coding
chr20.33005201.-	chr20	33005201	33005202	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSp|SINE|Alu	48929	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr19.48836586.-	chr19	48836586	48836587	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7957	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr10.133869270.+	chr10	133869270	133869271	+	0	NA	Intergenic	Intergenic	-49043	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr13.103451876.-	chr13	103451876	103451877	-	0	NA	promoter-TSS (NM_024089)	promoter-TSS (NM_024089)	472	NM_024089	79070	Hs.408629	NM_024089	ENSG00000134901	KDELC1	EP58|KDEL1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding
chr2.239960701.-	chr2	239960701	239960702	-	0	NA	Intergenic	Intergenic	-29909	NR_039642	100616397		NR_039642		MIR4440	-	microRNA 4440	miscRNA
chr8.144659934.+	chr8	144659934	144659935	+	0	NA	"intron (NM_145201, intron 2 of 12)"	CpG-26144	579	NM_145201	93100	Hs.493164	NM_145201	ENSG00000147813	NAPRT1	PP3856	nicotinate phosphoribosyltransferase domain containing 1	protein-coding
chr2.242447093.-	chr2	242447093	242447094	-	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	-682	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr21.39289305.+	chr21	39289305	39289306	+	0	NA	promoter-TSS (NM_002240)	promoter-TSS (NM_002240)	-564	NM_002240	3763	Hs.741904	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	"potassium inwardly-rectifying channel, subfamily J, member 6"	protein-coding
chr9.130734340.-	chr9	130734340	130734341	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8472	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr1.228105063.-	chr1	228105063	228105064	-	0	NA	Intergenic	Intergenic	-24321	NR_049806	100847072		NR_049806		MIR5008	-	microRNA 5008	miscRNA
chr1.109811866.-	chr1	109811866	109811867	-	0	NA	"exon (NM_001408, exon 20 of 34)"	"exon (NM_001408, exon 20 of 34)"	-13924	NM_032636	84722	Hs.405925	NM_001005290	ENSG00000134222	PSRC1	DDA3|FP3214	proline/serine-rich coiled-coil 1	protein-coding
chr1.121485059.+	chr1	121485059	121485060	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	224149	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr14.77927233.-	chr14	77927233	77927234	-	0	NA	"intron (NM_012111, intron 2 of 8)"	AluSc8|SINE|Alu	-2860	NM_012111	10598	Hs.204041	NM_012111	ENSG00000100591	AHSA1	AHA1|C14orf3|p38	"AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)"	protein-coding
chr7.2716285.-	chr7	2716285	2716286	-	0	NA	Intergenic	Intergenic	2878	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr7.56109489.+	chr7	56109489	56109490	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9779	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr14.75760975.-	chr14	75760975	75760976	-	0	NA	promoter-TSS (NR_038421)	promoter-TSS (NR_038421)	132	NR_038421	731223	Hs.534624	NR_038421		LOC731223	-	uncharacterized LOC731223	miscRNA
chr12.51681427.-	chr12	51681427	51681428	-	0	NA	"intron (NM_016293, intron 11 of 12)"	"intron (NM_016293, intron 11 of 12)"	17225	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr16.656874.+	chr16	656874	656875	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16701	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr13.21644844.-	chr13	21644844	21644845	-	0	NA	Intergenic	AluSx|SINE|Alu	9122	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr16.9185060.-	chr16	9185060	9185061	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	477	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr8.133680838.+	chr8	133680838	133680839	+	0	NA	"intron (NR_073525, intron 1 of 12)"	AluY|SINE|Alu	7025	NR_073525	23639	Hs.591865	NM_012472	ENSG00000129295	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
chr16.88387033.+	chr16	88387033	88387034	+	0	NA	Intergenic	L2b|LINE|L2	-106846	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr1.6320610.+	chr1	6320610	6320611	+	0	NA	"intron (NM_207370, intron 1 of 5)"	CpG	425	NM_207370	387509	Hs.531581	NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
chr2.187502107.+	chr2	187502107	187502108	+	0	NA	"intron (NM_001145000, intron 6 of 27)"	AluJb|SINE|Alu	37175	NM_001144999	3685	Hs.436873	NM_001144999	ENSG00000138448	ITGAV	CD51|MSK8|VNRA|VTNR	"integrin, alpha V"	protein-coding
chr19.50670089.-	chr19	50670089	50670090	-	0	NA	Intergenic	AluSg|SINE|Alu	3551	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr3.149374886.-	chr3	149374886	149374887	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-926	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr6.10074193.-	chr6	10074193	10074194	-	0	NA	Intergenic	LTR12C|LTR|ERV1	338358	NR_033910	100130275	Hs.661431	NR_033910		LOC100130275	-	uncharacterized LOC100130275	miscRNA
chr1.8837730.+	chr1	8837730	8837731	+	0	NA	"intron (NM_001042681, intron 1 of 22)"	AluY|SINE|Alu	39969	NM_012102	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr18.48643930.-	chr18	48643930	48643931	-	0	NA	Intergenic	SVA_B|Other|Other	-80121	NM_016626	51320	Hs.465144	NM_016626	ENSG00000176624	MEX3C	MEX-3C|RKHD2|RNF194	mex-3 homolog C (C. elegans)	protein-coding
chr16.3229082.+	chr16	3229082	3229083	+	0	NA	Intergenic	AluSp|SINE|Alu	-25165	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr1.2457933.-	chr1	2457933	2457934	-	0	NA	"exon (NM_018216, exon 1 of 19)"	"exon (NM_018216, exon 1 of 19)"	-102	NM_018216	55229	Hs.26156	NM_018216	ENSG00000157881	PANK4	-	pantothenate kinase 4	protein-coding
chr1.38342279.+	chr1	38342279	38342280	+	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	-16987	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr6.25280234.+	chr6	25280234	25280235	+	0	NA	"intron (NM_017640, intron 1 of 36)"	"intron (NM_017640, intron 1 of 36)"	578	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr2.121244121.+	chr2	121244121	121244122	+	0	NA	Intergenic	Intergenic	-20196	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr16.49892613.-	chr16	49892613	49892614	-	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	783	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr9.138065719.-	chr9	138065719	138065720	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7736	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr7.519539.-	chr7	519539	519540	-	0	NA	Intergenic	Intergenic	-39942	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr13.111268294.+	chr13	111268294	111268295	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	363	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr5.175665286.+	chr5	175665286	175665287	+	0	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	-84	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr1.40953681.-	chr1	40953681	40953682	-	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	-10379	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr17.4708664.-	chr17	4708664	4708665	-	0	NA	Intergenic	AluSp|SINE|Alu	1732	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr3.171911869.+	chr3	171911869	171911870	+	0	NA	"intron (NM_022763, intron 3 of 25)"	AluY|SINE|Alu	153525	NM_001135095	64778	Hs.159430	NM_001135095	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
chr3.88595866.-	chr3	88595866	88595867	-	0	NA	Intergenic	AluSc8|SINE|Alu	396850	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr1.156527507.-	chr1	156527507	156527508	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14889	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chrX.153591780.+	chrX	153591780	153591781	+	0	NA	"intron (NM_001456, intron 15 of 46)"	AluSp|SINE|Alu	11226	NM_001110556	2316	Hs.195464	NM_001110556	ENSG00000196924	FLNA	ABP-280|ABPX|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	"filamin A, alpha"	protein-coding
chr16.544870.-	chr16	544870	544871	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20020	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr3.133028693.+	chr3	133028693	133028694	+	0	NA	"intron (NM_023943, intron 3 of 5)"	AluYa5|SINE|Alu	-90097	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|LIFL-L|PHAKOSIN	"beaded filament structural protein 2, phakinin"	protein-coding
chr13.19728196.-	chr13	19728196	19728197	-	0	NA	Intergenic	Intergenic	-11074	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr19.27736310.+	chr19	27736310	27736311	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	548538	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr11.1946054.+	chr11	1946054	1946055	+	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	5255	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr9.107825418.+	chr9	107825418	107825419	+	0	NA	Intergenic	AluSc|SINE|Alu	-134891	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr16.67948380.-	chr16	67948380	67948381	-	0	NA	"intron (NM_006742, intron 2 of 2)"	AluSx|SINE|Alu	-17398	NM_001907	1506	Hs.654546	NM_001907		CTRL	CTRL1	chymotrypsin-like	protein-coding
chr7.100719575.-	chr7	100719575	100719576	-	0	NA	Intergenic	Intergenic	9211	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr2.74464121.-	chr2	74464121	74464122	-	0	NA	"intron (NM_133478, intron 21 of 30)"	AluY|SINE|Alu	-38431	NM_006636	10797	Hs.469030	NM_006636		MTHFD2	NMDMC	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase"	protein-coding
chr5.25535452.-	chr5	25535452	25535453	-	0	NA	Intergenic	AluY|SINE|Alu	694760	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr7.45775957.-	chr7	45775957	45775958	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32660	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr2.121397349.+	chr2	121397349	121397350	+	0	NA	Intergenic	AluY|SINE|Alu	-157518	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chrX.153657102.+	chrX	153657102	153657103	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	124	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr6.133986051.+	chr6	133986051	133986052	+	0	NA	Intergenic	SVA_F|Other|Other	-156234	NR_027030	154089	Hs.126165	NR_027030		MGC34034	-	uncharacterized protein MGC34034	miscRNA
chr12.131521222.-	chr12	131521222	131521223	-	0	NA	"intron (NM_198827, intron 13 of 24)"	(CACCG)n|Simple_repeat|Simple_repeat	-82770	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr19.5686513.-	chr19	5686513	5686514	-	0	NA	"exon (NM_001267868, exon 5 of 9)"	"exon (NM_001267868, exon 5 of 9)"	3759	NM_033643	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
chr3.109112123.-	chr3	109112123	109112124	-	0	NA	Intergenic	AluY|SINE|Alu	16714	NM_001145553	401082	Hs.477089	NM_001145553		FLJ25363	-	uncharacterized LOC401082	protein-coding
chr19.5204027.+	chr19	5204027	5204028	+	0	NA	Intergenic	AluSc8|SINE|Alu	136787	NM_002850	5802	Hs.644384	NM_002850	ENSG00000105426	PTPRS	PTPSIGMA	"protein tyrosine phosphatase, receptor type, S"	protein-coding
chr2.202092572.-	chr2	202092572	202092573	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5594	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr12.132157774.-	chr12	132157774	132157775	-	0	NA	Intergenic	Intergenic	37858	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr12.68073344.+	chr12	68073344	68073345	+	0	NA	Intergenic	AluY|SINE|Alu	30832	NM_003583	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr19.2492339.-	chr19	2492339	2492340	-	0	NA	Intergenic	AluSz|SINE|Alu	-16216	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr5.178491405.-	chr5	178491405	178491406	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluJo|SINE|Alu	-3798	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr17.7183181.-	chr17	7183181	7183182	-	0	NA	Intergenic	AluSx|SINE|Alu	1873	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr19.47364555.+	chr19	47364555	47364556	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-10352	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr9.80898938.-	chr9	80898938	80898939	-	0	NA	Intergenic	LTR12|LTR|ERV1	13121	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr18.62494599.+	chr18	62494599	62494600	+	0	NA	Intergenic	AluY|SINE|Alu	-567309	NR_033983	400654	Hs.434235	NR_033983	ENSG00000266952	LOC400654	-	uncharacterized LOC400654	miscRNA
chr1.110881130.-	chr1	110881130	110881131	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-663	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr13.112722089.-	chr13	112722089	112722090	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-176	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chrX.21676553.+	chrX	21676553	21676554	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-105	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr22.37641448.-	chr22	37641448	37641449	-	0	NA	Intergenic	Intergenic	1143	NM_002872	5880	Hs.517601	NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022	"ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)"	protein-coding
chr19.4065730.-	chr19	4065730	4065731	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1086	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr9.133788028.+	chr9	133788028	133788029	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18803	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr9.127626612.-	chr9	127626612	127626613	-	0	NA	Intergenic	AluSx|SINE|Alu	2372	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr22.50711975.-	chr22	50711975	50711976	-	0	NA	Intergenic	LTR13|LTR|ERVK	3196	NM_002751	5600	Hs.57732	XM_003960822	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
chr6.127845945.-	chr6	127845945	127845946	-	0	NA	Intergenic	AluY|SINE|Alu	5445	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr19.46277565.-	chr19	46277565	46277566	-	0	NA	"intron (NM_001081563, intron 8 of 13)"	AluY|SINE|Alu	5068	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
chr7.102565277.-	chr7	102565277	102565278	-	0	NA	"intron (NM_145032, intron 10 of 19)"	AluYc|SINE|Alu	-11933	NM_001031692	10234	Hs.567412	NM_001031692	ENSG00000128606	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
chr3.164119662.+	chr3	164119662	164119663	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676621	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr18.19630101.+	chr18	19630101	19630102	+	0	NA	Intergenic	AluY|SINE|Alu	-119303	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr2.224724717.-	chr2	224724717	224724718	-	0	NA	Intergenic	AluSp|SINE|Alu	22398	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr6.33500257.-	chr6	33500257	33500258	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47813	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr21.10990241.-	chr21	10990241	10990242	-	0	NA	"intron (NM_199259, intron 1 of 22)"	CpG	-679	NM_199261	7179	Hs.122986	NM_199259	ENSG00000166157	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
chr8.23379468.+	chr8	23379468	23379469	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6895	NM_016612	51312	Hs.726050	NM_016612		SLC25A37	MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	"solute carrier family 25 (mitochondrial iron transporter), member 37"	protein-coding
chr18.11959917.+	chr18	11959917	11959918	+	0	NA	Intergenic	SVA_D|Other|Other	-21510	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr8.141559334.+	chr8	141559334	141559335	+	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	37253	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr10.120946160.-	chr10	120946160	120946161	-	0	NA	Intergenic	AluY|SINE|Alu	7815	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr10.135270810.-	chr10	135270810	135270811	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3378	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chrX.12171175.+	chrX	12171175	12171176	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14590	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chr22.20104729.-	chr22	20104729	20104730	-	0	NA	promoter-TSS (NM_022727)	promoter-TSS (NM_022727)	-89	NM_022727	27037	Hs.713579	NM_001257994	ENSG00000099899	TRMT2A	HTF9C	tRNA methyltransferase 2 homolog A (S. cerevisiae)	protein-coding
chr3.158906018.-	chr3	158906018	158906019	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	AluSq2|SINE|Alu	85018	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr11.32993515.+	chr11	32993515	32993516	+	0	NA	"intron (NM_001076786, intron 10 of 12)"	AluY|SINE|Alu	-43895	NM_001077242	91614	Hs.280990	NM_001077242	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
chr5.159429706.-	chr5	159429706	159429707	-	0	NA	Intergenic	AluSz|SINE|Alu	6474	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr2.242840624.-	chr2	242840624	242840625	-	0	NA	Intergenic	AluSx1|SINE|Alu	-28738	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr19.11060474.+	chr19	11060474	11060475	+	0	NA	Intergenic	AluY|SINE|Alu	-11124	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr8.22982117.-	chr8	22982117	22982118	-	0	NA	Intergenic	AluSz6|SINE|Alu	-21790	NM_003841	8794	Hs.655801	NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	"tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain"	protein-coding
chr5.693684.+	chr5	693684	693685	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-174	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr2.91874406.+	chr2	91874406	91874407	+	0	NA	Intergenic	CpG	-26431	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr1.95285777.-	chr1	95285777	95285778	-	0	NA	promoter-TSS (NM_001258342)	promoter-TSS (NM_001258342)	121	NM_001258343	126969	Hs.483423	NM_001114106	ENSG00000143036	SLC44A3	CTL3	"solute carrier family 44, member 3"	protein-coding
chr12.8057404.+	chr12	8057404	8057405	+	0	NA	Intergenic	AluSg7|SINE|Alu	31488	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr5.1770133.-	chr5	1770133	1770134	-	0	NA	Intergenic	L1MB5|LINE|L1	-29823	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr8.7414169.+	chr8	7414169	7414170	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2457	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr9.10787004.+	chr9	10787004	10787005	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174281	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.218165401.+	chr1	218165401	218165402	+	0	NA	Intergenic	AluSq|SINE|Alu	99159	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr3.15147875.-	chr3	15147875	15147876	-	0	NA	Intergenic	AluSz|SINE|Alu	7220	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr13.114929685.-	chr13	114929685	114929686	-	0	NA	Intergenic	Intergenic	31590	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr8.7414147.+	chr8	7414147	7414148	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2479	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr21.43109560.+	chr21	43109560	43109561	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10098	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr9.140131484.-	chr9	140131484	140131485	-	0	NA	TTS (NM_001177317)	TTS (NM_001177317)	4227	NM_006088	10383	Hs.433615	NM_006088	ENSG00000188229	TUBB4B	Beta2|TUBB2|TUBB2C	"tubulin, beta 4B class IVb"	protein-coding
chr2.242480244.-	chr2	242480244	242480245	-	0	NA	Intergenic	Intergenic	17902	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr6.160985697.-	chr6	160985697	160985698	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53541	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr6.46742390.-	chr6	46742390	46742391	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18704	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr6.157734049.-	chr6	157734049	157734050	-	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	-11204	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr17.42679449.+	chr17	42679449	42679450	+	0	NA	Intergenic	Intergenic	44637	NM_001466	2535	Hs.732654	NM_001466		FZD2	Fz2|fz-2|fzE2|hFz2	frizzled family receptor 2	protein-coding
chr1.149646772.-	chr1	149646772	149646773	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70319	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr7.532190.-	chr7	532190	532191	-	0	NA	Intergenic	Intergenic	-27291	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr9.34370837.-	chr9	34370837	34370838	-	0	NA	"exon (NM_020702, exon 2 of 2)"	"exon (NM_020702, exon 2 of 2)"	-6057	NM_020702	57462	Hs.522083	NM_020702		KIAA1161	NET37	KIAA1161	protein-coding
chrX.53808350.+	chrX	53808350	53808351	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94653	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr5.39608731.+	chr5	39608731	39608732	+	0	NA	Intergenic	AluY|SINE|Alu	-183396	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chrM.10724.-	chrM	10724	10725	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr7.99156287.-	chr7	99156287	99156288	-	0	NA	promoter-TSS (NM_001085368)	promoter-TSS (NM_001085368)	161	NM_001009960	79027	Hs.599798	NM_001009958	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
chrX.9366109.-	chrX	9366109	9366110	-	0	NA	Intergenic	AluY|SINE|Alu	65226	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr2.85554172.+	chr2	85554172	85554173	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1247	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr5.36855794.-	chr5	36855794	36855795	-	0	NA	Intergenic	AluSx|SINE|Alu	-21002	NR_046262	646719	Hs.355684	NR_046262		LOC646719	-	uncharacterized LOC646719	miscRNA
chr2.224599662.-	chr2	224599662	224599663	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102657	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr5.17207791.+	chr5	17207791	17207792	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9141	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr4.38809145.+	chr4	38809145	38809146	+	0	NA	Intergenic	SVA_D|Other|Other	-2733	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr3.184299414.+	chr3	184299414	184299415	+	0	NA	"3' UTR (NM_004443, exon 16 of 16)"	"3' UTR (NM_004443, exon 16 of 16)"	19827	NM_004443	2049	Hs.2913	NM_004443	ENSG00000182580	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
chr22.49833056.+	chr22	49833056	49833057	+	0	NA	Intergenic	AluSx|SINE|Alu	218134	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr16.57898551.+	chr16	57898551	57898552	+	0	NA	Intergenic	AluSg|SINE|Alu	-62112	NM_005550	3801	Hs.23131	NM_001130099	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
chr2.61306997.+	chr2	61306997	61306998	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13634	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr9.127626608.-	chr9	127626608	127626609	-	0	NA	Intergenic	AluSx|SINE|Alu	2368	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr2.198058510.-	chr2	198058510	198058511	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117011	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr14.64299478.+	chr14	64299478	64299479	+	0	NA	Intergenic	AluJb|SINE|Alu	-20205	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr2.11411913.-	chr2	11411913	11411914	-	0	NA	"intron (NM_004850, intron 3 of 32)"	AluY|SINE|Alu	-72798	NM_004850	9475	Hs.681743	NM_004850		ROCK2	ROCK-II	"Rho-associated, coiled-coil containing protein kinase 2"	protein-coding
chr7.158462178.-	chr7	158462178	158462179	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35342	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr2.136760857.+	chr2	136760857	136760858	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17635	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr19.23474446.+	chr19	23474446	23474447	+	0	NA	Intergenic	AluSx|SINE|Alu	-41274	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr16.81282910.-	chr16	81282910	81282911	-	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	-10614	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr8.107670059.-	chr8	107670059	107670060	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-23	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr17.48631008.+	chr17	48631008	48631009	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6558	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr22.47162091.-	chr22	47162091	47162092	-	0	NA	"intron (NM_014346, intron 1 of 12)"	AluY|SINE|Alu	-3573	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr11.16635398.+	chr11	16635398	16635399	+	0	NA	Intergenic	CpG	-124750	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr12.120856957.+	chr12	120856957	120856958	+	0	NA	Intergenic	AluSz|SINE|Alu	-18936	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr19.34248496.-	chr19	34248496	34248497	-	0	NA	"intron (NM_022467, intron 2 of 3)"	(GAAA)n|Simple_repeat|Simple_repeat	39255	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr7.3124634.+	chr7	3124634	3124635	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41125	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr9.137277734.+	chr9	137277734	137277735	+	0	NA	"intron (NM_002957, intron 1 of 9)"	MIR3|SINE|MIR	6477	NR_039816	100616236		NR_039816		MIR4669	-	microRNA 4669	miscRNA
chr9.26820720.+	chr9	26820720	26820721	+	0	NA	Intergenic	AluY|SINE|Alu	72106	NM_024828	79886	Hs.178357	NM_001167575	ENSG00000120159	CAAP1	C9orf82|CAAP|RP11-337A23.1	caspase activity and apoptosis inhibitor 1	protein-coding
chr17.17618915.+	chr17	17618915	17618916	+	0	NA	"intron (NM_030665, intron 1 of 5)"	"intron (NM_030665, intron 1 of 5)"	34128	NM_030665	10743	Hs.727059	NM_030665	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
chr1.6320615.+	chr1	6320615	6320616	+	0	NA	"intron (NM_207370, intron 1 of 5)"	CpG	420	NM_207370	387509	Hs.531581	NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
chr19.40696451.-	chr19	40696451	40696452	-	0	NA	Intergenic	AluSx|SINE|Alu	1200	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr11.4258886.+	chr11	4258886	4258887	+	0	NA	Intergenic	SVA_B|Other|Other	50504	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr17.70581410.-	chr17	70581410	70581411	-	0	NA	"intron (NR_036488, intron 1 of 3)"	AluY|SINE|Alu	-7533	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	-	long intergenic non-protein coding RNA 673	miscRNA
chr13.41363563.-	chr13	41363563	41363564	-	0	NA	promoter-TSS (NM_014252)	promoter-TSS (NM_014252)	-16	NM_014252	10166	Hs.646645	NM_014252		SLC25A15	D13S327|HHH|ORC1|ORNT1	solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15	protein-coding
chr15.89721776.+	chr15	89721776	89721777	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43146	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chrX.48975597.+	chrX	48975597	48975598	+	0	NA	"intron (NM_015698, intron 4 of 10)"	AluY|SINE|Alu	4482	NM_015698	27238	Hs.503666	NM_015698		GPKOW	GPATC5|GPATCH5|Spp2|T54	G patch domain and KOW motifs	protein-coding
chr12.54085376.+	chr12	54085376	54085377	+	0	NA	Intergenic	AluY|SINE|Alu	-14864	NM_001002031	517	Hs.524464	NM_001002031	ENSG00000135390	ATP5G2	ATP5A	"ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)"	protein-coding
chr9.28773103.-	chr9	28773103	28773104	-	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	53800	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chrX.152066764.-	chrX	152066764	152066765	-	0	NA	Intergenic	CpG	16222	NM_001178106	7739	Hs.16622	NM_001178106	ENSG00000147394	ZNF185	-	zinc finger protein 185 (LIM domain)	protein-coding
chr3.28951350.+	chr3	28951350	28951351	+	0	NA	Intergenic	AluY|SINE|Alu	334581	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chrX.153362948.+	chrX	153362948	153362949	+	0	NA	"intron (NM_004992, intron 1 of 3)"	CpG	240	NM_001110792	4204	Hs.731393	NM_001110792	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl CpG binding protein 2 (Rett syndrome)	protein-coding
chr3.53118161.-	chr3	53118161	53118162	-	0	NA	Intergenic	Intergenic	38072	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr2.48010434.-	chr2	48010434	48010435	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-213	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr9.131639050.-	chr9	131639050	131639051	-	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	-5304	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr19.56075917.+	chr19	56075917	56075918	+	0	NA	Intergenic	Intergenic	16294	NM_152600	163033	Hs.112529	NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
chr12.118282885.-	chr12	118282885	118282886	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123143	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr4.1358118.+	chr4	1358118	1358119	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	17014	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr5.2860356.-	chr5	2860356	2860357	-	0	NA	Intergenic	Intergenic	-108094	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr11.35684396.+	chr11	35684396	35684397	+	0	NA	promoter-TSS (NM_017583)	promoter-TSS (NM_017583)	43	NM_017583	54765	Hs.192103	NM_017583		TRIM44	DIPB|HSA249128|MC7	tripartite motif containing 44	protein-coding
chr3.5231486.+	chr3	5231486	5231487	+	0	NA	"intron (NM_014674, intron 1 of 11)"	AluSc8|SINE|Alu	2127	NM_014674	9695	Hs.224616	NM_014674	ENSG00000134109	EDEM1	EDEM	"ER degradation enhancer, mannosidase alpha-like 1"	protein-coding
chr7.936470.-	chr7	936470	936471	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20279	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr9.139936104.-	chr9	139936104	139936105	-	0	NA	"intron (NM_015392, intron 2 of 8)"	"intron (NM_015392, intron 2 of 8)"	-4572	NM_015392	56654	Hs.719906	NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	"neural proliferation, differentiation and control, 1"	protein-coding
chrM.6451.+	chrM	6451	6452	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.224301959.+	chr1	224301959	224301960	+	0	NA	"exon (NM_015176, exon 1 of 5)"	"exon (NM_015176, exon 1 of 5)"	170	NM_015176	23219	Hs.64691	NM_001136115	ENSG00000143756	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
chr9.133788025.+	chr9	133788025	133788026	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18800	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr10.131991879.-	chr10	131991879	131991880	-	0	NA	Intergenic	Intergenic	-57240	NM_001199868	10539	Hs.42644	NM_001199868	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
chrX.128920967.-	chrX	128920967	128920968	-	0	NA	"intron (NM_018990, intron 1 of 7)"	AluY|SINE|Alu	-7075	NM_018990	54440	Hs.61469	NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
chr4.26862505.-	chr4	26862505	26862506	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-192	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr1.32122107.-	chr1	32122107	32122108	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11269	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr17.29255173.+	chr17	29255173	29255174	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6419	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr9.35846384.+	chr9	35846384	35846385	+	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	-13887	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr17.4697281.-	chr17	4697281	4697282	-	0	NA	Intergenic	AluY|SINE|Alu	2158	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr9.141038862.-	chr9	141038862	141038863	-	0	NA	Intergenic	Intergenic	5703	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr18.31802633.+	chr18	31802633	31802634	+	0	NA	promoter-TSS (NM_001198547)	promoter-TSS (NM_001198547)	-199	NR_036752	8715	Hs.514795	NM_001198546	ENSG00000101746	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
chr4.18024019.-	chr4	18024019	18024020	-	0	NA	promoter-TSS (NM_153686)	promoter-TSS (NM_153686)	536	NM_153686	254251	Hs.677572	NM_001166139	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor-like	protein-coding
chr10.324328.-	chr10	324328	324329	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98394	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr2.44380950.-	chr2	44380950	44380951	-	0	NA	Intergenic	AluY|SINE|Alu	15050	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr2.86948211.-	chr2	86948211	86948212	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	-34	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr9.139780632.-	chr9	139780632	139780633	-	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	333	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr19.9311225.-	chr19	9311225	9311226	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14322	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chrX.53125819.+	chrX	53125819	53125820	+	0	NA	Intergenic	AluJb|SINE|Alu	14277	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.4816948.+	chr16	4816948	4816949	+	0	NA	"intron (NM_021646, intron 1 of 5)"	CpG	218	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr12.112407459.-	chr12	112407459	112407460	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43564	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr4.26528153.-	chr4	26528153	26528154	-	0	NA	Intergenic	AluSp|SINE|Alu	36111	NM_000730	886	Hs.129	NM_000730	ENSG00000163394	CCKAR	CCK-A|CCK1-R|CCKRA	cholecystokinin A receptor	protein-coding
chrX.144902937.-	chrX	144902937	144902938	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-71	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr11.18743323.+	chr11	18743323	18743324	+	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	4454	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chrM.9174.-	chrM	9174	9175	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr20.48080584.+	chr20	48080584	48080585	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18597	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr17.72916052.-	chr17	72916052	72916053	-	0	NA	"exon (NM_173477, exon 2 of 3)"	"exon (NM_173477, exon 2 of 3)"	-3299	NM_173477	124590	Hs.376688	NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	Usher syndrome 1G (autosomal recessive)	protein-coding
chrX.91037180.+	chrX	91037180	91037181	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2920	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr16.631893.-	chr16	631893	631894	-	0	NA	"intron (NM_148920, intron 9 of 9)"	AluSq2|SINE|Alu	7464	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr20.62657587.+	chr20	62657587	62657588	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8110	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chrX.153736376.+	chrX	153736376	153736377	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8190	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chrX.7055265.-	chrX	7055265	7055266	-	0	NA	"intron (NM_001135565, intron 1 of 4)"	AluSq2|SINE|Alu	10636	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr16.84670328.+	chr16	84670328	84670329	+	0	NA	Intergenic	AluY|SINE|Alu	-11803	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr11.66512692.-	chr11	66512692	66512693	-	0	NA	"intron (NR_048553, intron 1 of 14)"	CpG	-485	NM_024650	79703	Hs.292088	NM_024650	ENSG00000173715	C11orf80	-	chromosome 11 open reading frame 80	protein-coding
chrX.153095527.-	chrX	153095527	153095528	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-476	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr3.139481310.-	chr3	139481310	139481311	-	0	NA	Intergenic	Intergenic	84425	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr1.163468375.+	chr1	163468375	163468376	+	0	NA	Intergenic	SVA_A|Other|Other	176652	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr18.33543832.+	chr18	33543832	33543833	+	0	NA	Intergenic	AluY|SINE|Alu	-8756	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr19.44489475.-	chr19	44489475	44489476	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1153	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr19.45678444.+	chr19	45678444	45678445	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3057	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr8.104645088.-	chr8	104645088	104645089	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132112	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr16.75395289.-	chr16	75395289	75395290	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluSz|SINE|Alu	-72098	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
chr9.139119895.+	chr9	139119895	139119896	+	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	17792	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr5.3188302.-	chr5	3188302	3188303	-	0	NA	Intergenic	CpG	-347906	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr1.195213206.+	chr1	195213206	195213207	+	0	NA	Intergenic	AluY|SINE|Alu	1338405	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr8.101964864.+	chr8	101964864	101964865	+	0	NA	promoter-TSS (NM_145690)	promoter-TSS (NM_145690)	357	NM_001135699	7534	Hs.492407	NM_001135699	ENSG00000164924	YWHAZ	14-3-3-zeta|KCIP-1|YWHAD	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide"	protein-coding
chr15.41674338.-	chr15	41674338	41674339	-	0	NA	Intergenic	SVA_F|Other|Other	-20320	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr22.48453620.+	chr22	48453620	48453621	+	0	NA	Intergenic	Intergenic	-216556	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	miscRNA
chr1.61398373.-	chr1	61398373	61398374	-	0	NA	Intergenic	AluY|SINE|Alu	144573	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr3.25825382.+	chr3	25825382	25825383	+	0	NA	promoter-TSS (NM_001145295)	promoter-TSS (NM_001145295)	-393	NM_001145293	55768	Hs.743367	NM_001145293	ENSG00000151092	NGLY1	PNG1|PNGase	N-glycanase 1	protein-coding
chr12.120418868.-	chr12	120418868	120418869	-	0	NA	Intergenic	Intergenic	8780	NM_207311	92558	Hs.369763	NM_207311	ENSG00000135127	CCDC64	BICDR-1|H_267D11.1	coiled-coil domain containing 64	protein-coding
chr4.1541968.+	chr4	1541968	1541969	+	0	NA	Intergenic	Intergenic	143750	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr9.94459054.-	chr9	94459054	94459055	-	0	NA	Intergenic	AluSc8|SINE|Alu	60427	NR_037489	100500902		NR_037489		MIR3910-2	-	microRNA 3910-2	miscRNA
chr10.76198245.+	chr10	76198245	76198246	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	261998	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr19.13303019.-	chr19	13303019	13303020	-	0	NA	Intergenic	AluSp|SINE|Alu	-41737	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr4.188471121.-	chr4	188471121	188471122	-	0	NA	Intergenic	AluSg|SINE|Alu	44354	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr3.126260562.-	chr3	126260562	126260563	-	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	-17196	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr12.33592848.+	chr12	33592848	33592849	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-94	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr5.50265611.+	chr5	50265611	50265612	+	0	NA	Intergenic	CpG	302839	NM_001178056	79668	Hs.369581	NM_001178055	ENSG00000151883	PARP8	ARTD16|pART16	"poly (ADP-ribose) polymerase family, member 8"	protein-coding
chr17.7246123.-	chr17	7246123	7246124	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6275	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr13.62067806.+	chr13	62067806	62067807	+	0	NA	Intergenic	AluY|SINE|Alu	-78151	NM_022843	64881	Hs.391781	NM_022843	ENSG00000197991	PCDH20	PCDH13	protocadherin 20	protein-coding
chr7.139934034.-	chr7	139934034	139934035	-	0	NA	Intergenic	AluYd8|SINE|Alu	-56973	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	LOC100134229	-	uncharacterized LOC100134229	miscRNA
chr7.64198982.+	chr7	64198982	64198983	+	0	NA	Intergenic	SVA_D|Other|Other	-55784	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr13.81676523.-	chr13	81676523	81676524	-	0	NA	Intergenic	SVA_D|Other|Other	761437	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr17.8088492.+	chr17	8088492	8088493	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1771	NR_039746	100616406		NR_039746		MIR4521	-	microRNA 4521	miscRNA
chr8.140863663.+	chr8	140863663	140863664	+	0	NA	"intron (NM_031466, intron 21 of 22)"	"intron (NM_031466, intron 21 of 22)"	-148364	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr5.5495063.-	chr5	5495063	5495064	-	0	NA	Intergenic	Intergenic	-72277	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	KIAA0947	-	KIAA0947	protein-coding
chr16.15597166.+	chr16	15597166	15597167	+	0	NA	"intron (NM_001142469, intron 1 of 5)"	AluY|SINE|Alu	1043	NM_001142469	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
chr3.124469137.-	chr3	124469137	124469138	-	0	NA	Intergenic	SVA_D|Other|Other	-19924	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr19.18075331.-	chr19	18075331	18075332	-	0	NA	"intron (NM_002248, intron 2 of 10)"	"intron (NM_002248, intron 2 of 10)"	-13220	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr1.205503647.-	chr1	205503647	205503648	-	0	NA	Intergenic	Intergenic	-22116	NR_027086	284578	Hs.537020	NR_027086		LOC284578	-	uncharacterized LOC284578	miscRNA
chr15.91370825.-	chr15	91370825	91370826	-	0	NA	Intergenic	AluSz|SINE|Alu	41060	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr7.156795082.-	chr7	156795082	156795083	-	0	NA	Intergenic	Intergenic	-7047	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr16.1228079.+	chr16	1228079	1228080	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24838	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr7.936464.+	chr7	936464	936465	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20273	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr19.45852799.+	chr19	45852799	45852800	+	0	NA	"exon (NM_177417, exon 8 of 13)"	"exon (NM_177417, exon 8 of 13)"	8801	NM_177417	147700	Hs.298079	NM_177417	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
chr21.45285233.+	chr21	45285233	45285234	+	0	NA	"intron (NM_020132, intron 1 of 9)"	"intron (NM_020132, intron 1 of 9)"	117	NM_020132	56894	Hs.248785	NM_001037553	ENSG00000160216	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
chr5.128197046.+	chr5	128197046	128197047	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104164	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr12.113494401.-	chr12	113494401	113494402	-	0	NA	Intergenic	CpG	1261	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr21.43198296.+	chr21	43198296	43198297	+	0	NA	Intergenic	Intergenic	-11047	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr1.246995872.+	chr1	246995872	246995873	+	0	NA	Intergenic	AluSx1|SINE|Alu	42953	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr12.29880472.+	chr12	29880472	29880473	+	0	NA	"intron (NM_175861, intron 5 of 17)"	AluY|SINE|Alu	56271	NM_001193451	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr5.79801774.+	chr5	79801774	79801775	+	0	NA	"intron (NM_205548, intron 2 of 5)"	AluSx3|SINE|Alu	17974	NM_205548	167555	Hs.592674	NM_205548	ENSG00000152380	FAM151B	UNQ9217	"family with sequence similarity 151, member B"	protein-coding
chr2.240371709.+	chr2	240371709	240371710	+	0	NA	Intergenic	SVA_D|Other|Other	-49066	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.86597325.+	chr9	86597325	86597326	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1688	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr8.22594707.+	chr8	22594707	22594708	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43892	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr3.52030313.-	chr3	52030313	52030314	-	0	NA	promoter-TSS (NM_000992)	promoter-TSS (NM_000992)	355	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
chr2.204121177.+	chr2	204121177	204121178	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18013	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr12.118079897.+	chr12	118079897	118079898	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280290	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr21.37627702.-	chr21	37627702	37627703	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64785	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr19.51045503.-	chr19	51045503	51045504	-	0	NA	"intron (NM_001080457, intron 2 of 2)"	"intron (NM_001080457, intron 2 of 2)"	-25799	NM_001080457	94030	Hs.120873	NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4	leucine rich repeat containing 4B	protein-coding
chr7.155246294.+	chr7	155246294	155246295	+	0	NA	Intergenic	Intergenic	-4530	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr9.92014670.-	chr9	92014670	92014671	-	0	NA	"intron (NM_001142287, intron 6 of 20)"	AluSx1|SINE|Alu	-79941	NM_006378	10507	Hs.494406	NM_182635	ENSG00000187764	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D"	protein-coding
chr2.187826877.+	chr2	187826877	187826878	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-112980	NM_182521	151112	Hs.375054	NM_182521	ENSG00000163012	ZSWIM2	MEX|ZZZ2	"zinc finger, SWIM-type containing 2"	protein-coding
chrX.54061554.-	chrX	54061554	54061555	-	0	NA	"intron (NM_015107, intron 2 of 21)"	AluSg|SINE|Alu	-8073	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr1.65532963.+	chr1	65532963	65532964	+	0	NA	Intergenic	CpG	-8772	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr5.1494522.+	chr5	1494522	1494523	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29554	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr7.26294398.-	chr7	26294398	26294399	-	0	NA	Intergenic	AluSx1|SINE|Alu	37117	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr5.178491476.+	chr5	178491476	178491477	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	3869	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr1.153574133.+	chr1	153574133	153574134	+	0	NA	Intergenic	AluY|SINE|Alu	11381	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr14.102912054.+	chr14	102912054	102912055	+	0	NA	"intron (NM_001172631, intron 12 of 16)"	"intron (NM_001172631, intron 12 of 16)"	64074	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr10.125228152.-	chr10	125228152	125228153	-	0	NA	Intergenic	AluY|SINE|Alu	197719	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr11.69189578.+	chr11	69189578	69189579	+	0	NA	Intergenic	Intergenic	127956	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr19.2244228.-	chr19	2244228	2244229	-	0	NA	"intron (NM_007165, intron 2 of 8)"	"intron (NM_007165, intron 2 of 8)"	4885	NM_000479	268	Hs.112432	NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
chr19.18057793.+	chr19	18057793	18057794	+	0	NA	Intergenic	AluSx|SINE|Alu	-4318	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr14.104714764.-	chr14	104714764	104714765	-	0	NA	Intergenic	Intergenic	-109704	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
chr16.70356424.-	chr16	70356424	70356425	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23362	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr22.21315484.+	chr22	21315484	21315485	+	0	NA	Intergenic	AluY|SINE|Alu	-3934	NM_001018060	150209	Hs.723246	NM_001018060	ENSG00000183773	AIFM3	AIFL	"apoptosis-inducing factor, mitochondrion-associated, 3"	protein-coding
chr9.90728954.-	chr9	90728954	90728955	-	0	NA	Intergenic	REP522|Satellite|telo	-20946	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	"SPATA31 subfamily C, member 2"	protein-coding
chr2.111490294.+	chr2	111490294	111490295	+	0	NA	"5' UTR (NM_001142807, exon 1 of 18)"	"5' UTR (NM_001142807, exon 1 of 18)"	144	NM_001142807	55289	Hs.253320	NM_001105516	ENSG00000153093	ACOXL	-	acyl-CoA oxidase-like	protein-coding
chr7.150812759.+	chr7	150812759	150812760	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28933	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr8.609227.+	chr8	609227	609228	+	0	NA	Intergenic	Intergenic	71999	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr10.127582104.-	chr10	127582104	127582105	-	0	NA	Intergenic	AluY|SINE|Alu	3004	NM_145235	92565	Hs.352591	NM_145235	ENSG00000203780	FANK1	-	fibronectin type III and ankyrin repeat domains 1	protein-coding
chr6.70692581.-	chr6	70692581	70692582	-	0	NA	"intron (NM_001858, intron 11 of 50)"	L1M5|LINE|L1	-116133	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr11.77200943.-	chr11	77200943	77200944	-	0	NA	Intergenic	SVA_D|Other|Other	15835	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr15.75494177.+	chr15	75494177	75494178	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-44	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr8.22308543.-	chr8	22308543	22308544	-	0	NA	"intron (NM_001243975, intron 1 of 12)"	AluY|SINE|Alu	-10060	NM_001243974	5533	Hs.731683	NM_001243974	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	"protein phosphatase 3, catalytic subunit, gamma isozyme"	protein-coding
chr4.163163998.+	chr4	163163998	163163999	+	0	NA	Intergenic	AluY|SINE|Alu	-78812	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr17.29425871.+	chr17	29425871	29425872	+	0	NA	"intron (NM_001042492, intron 1 of 57)"	AluY|SINE|Alu	3926	NM_001128147	4763	Hs.113577	NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
chr5.16561374.-	chr5	16561374	16561375	-	0	NA	"intron (NM_001034850, intron 3 of 8)"	AluY|SINE|Alu	52267	NM_019000	54463	Hs.744032	NM_001034850	ENSG00000154153	FAM134B	JK-1|JK1	"family with sequence similarity 134, member B"	protein-coding
chr22.18892156.+	chr22	18892156	18892157	+	0	NA	Intergenic	Intergenic	-1580	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr8.26532428.-	chr8	26532428	26532429	-	0	NA	Intergenic	AluSp|SINE|Alu	-96507	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr12.132116752.-	chr12	132116752	132116753	-	0	NA	Intergenic	L1ME1|LINE|L1	78880	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr4.3540653.-	chr4	3540653	3540654	-	0	NA	Intergenic	SVA_D|Other|Other	6429	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr19.2492348.+	chr19	2492348	2492349	+	0	NA	Intergenic	AluSz|SINE|Alu	16225	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr9.130865534.+	chr9	130865534	130865535	+	0	NA	"intron (NM_001265614, intron 5 of 10)"	"intron (NM_001265614, intron 5 of 10)"	4773	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr16.3755335.-	chr16	3755335	3755336	-	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	-12263	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr3.46792418.+	chr3	46792418	46792419	+	0	NA	Intergenic	CpG	-6173	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr2.241622501.-	chr2	241622501	241622502	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	184	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr2.100253364.+	chr2	100253364	100253365	+	0	NA	"intron (NM_002285, intron 12 of 23)"	"intron (NM_002285, intron 12 of 23)"	-146884	NM_001037872	51455	Hs.443077	NM_001037872	ENSG00000135945	REV1	REV1L	"REV1, polymerase (DNA directed)"	protein-coding
chr20.61425550.+	chr20	61425550	61425551	+	0	NA	Intergenic	MIRc|SINE|MIR	-2255	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr19.42811059.-	chr19	42811059	42811060	-	0	NA	"intron (NM_199285, intron 1 of 2)"	CpG	4107	NM_001145940	5050	Hs.466831	NM_001145939	ENSG00000079462	PAFAH1B3	PAFAHG	"platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)"	protein-coding
chrX.122884635.+	chrX	122884635	122884636	+	0	NA	Intergenic	AluSz|SINE|Alu	-17731	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr5.176292925.+	chr5	176292925	176292926	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33408	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr1.32122159.+	chr1	32122159	32122160	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11321	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chrX.153095519.-	chrX	153095519	153095520	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-484	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr17.81009566.+	chr17	81009566	81009567	+	0	NA	"intron (NM_001009905, intron 1 of 12)"	CpG	120	NM_001009905	146712	Hs.607824	NM_001009905	ENSG00000175711	B3GNTL1	B3GNT8	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1"	protein-coding
chr16.57323208.+	chr16	57323208	57323209	+	0	NA	Intergenic	AluY|SINE|Alu	-4624	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
chr13.89907345.-	chr13	89907345	89907346	-	0	NA	Intergenic	AluSx1|SINE|Alu	-309322	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	miscRNA
chr13.88664978.-	chr13	88664978	88664979	-	0	NA	Intergenic	AluSx1|SINE|Alu	-340108	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr19.49964900.+	chr19	49964900	49964901	+	0	NA	"exon (NM_153329, exon 6 of 17)"	"exon (NM_153329, exon 6 of 17)"	8427	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr8.12476325.-	chr8	12476325	12476326	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46795	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr11.850375.+	chr11	850375	850376	+	0	NA	"intron (NM_001025235, intron 3 of 8)"	CpG-3678	5929	NM_001025237	7106	Hs.654836	NM_001025234	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
chr12.104506925.+	chr12	104506925	104506926	+	0	NA	Intergenic	AluY|SINE|Alu	25115	NM_006166	4801	Hs.84928	NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	"nuclear transcription factor Y, beta"	protein-coding
chr4.2308042.+	chr4	2308042	2308043	+	0	NA	"intron (NM_020972, intron 7 of 12)"	"intron (NM_020972, intron 7 of 12)"	-44303	NM_006454	10608	Hs.655020	NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
chr12.33592857.+	chr12	33592857	33592858	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-103	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr17.18755290.-	chr17	18755290	18755291	-	0	NA	Intergenic	AluSp|SINE|Alu	4322	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr11.1476574.+	chr11	1476574	1476575	+	0	NA	"intron (NM_003957, intron 16 of 19)"	"intron (NM_003957, intron 16 of 19)"	31374	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr17.34053890.+	chr17	34053890	34053891	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4789	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr6.165953187.+	chr6	165953187	165953188	+	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	122401	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr6.135685301.+	chr6	135685301	135685302	+	0	NA	"intron (NM_001134831, intron 23 of 28)"	SVA_D|Other|Other	133602	NM_017651	54806	Hs.386684	NM_001134830	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
chr7.12751316.+	chr7	12751316	12751317	+	0	NA	Intergenic	AluY|SINE|Alu	24405	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr19.45678454.-	chr19	45678454	45678455	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3047	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr18.41408393.+	chr18	41408393	41408394	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550778	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr12.131127785.+	chr12	131127785	131127786	+	0	NA	Intergenic	Intergenic	-125375	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr13.31735094.+	chr13	31735094	31735095	+	0	NA	"intron (NM_006644, intron 1 of 17)"	"intron (NM_006644, intron 1 of 17)"	1023	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr13.110983848.+	chr13	110983848	110983849	+	0	NA	"intron (NM_001846, intron 3 of 47)"	"intron (NM_001846, intron 3 of 47)"	24217	NM_001846	1284	Hs.508716	NM_001846	ENSG00000134871	COL4A2	ICH|POREN2	"collagen, type IV, alpha 2"	protein-coding
chr2.181845007.-	chr2	181845007	181845008	-	0	NA	promoter-TSS (NM_006357)	promoter-TSS (NM_006357)	105	NM_182678	10477	Hs.470804	NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chr2.30256203.+	chr2	30256203	30256204	+	0	NA	Intergenic	AluSp|SINE|Alu	-111726	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chrX.112142833.-	chrX	112142833	112142834	-	0	NA	Intergenic	AluY|SINE|Alu	58790	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr17.18575627.+	chr17	18575627	18575628	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	867	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr8.38894825.+	chr8	38894825	38894826	+	0	NA	"intron (NR_027638, intron 11 of 20)"	AluYc3|SINE|Alu	40320	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
chr7.124427297.+	chr7	124427297	124427298	+	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	3567	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr15.59225786.+	chr15	59225786	59225787	+	0	NA	promoter-TSS (NM_024755)	promoter-TSS (NM_024755)	66	NM_024755	79811	Hs.512932	NM_017968	ENSG00000137776	SLTM	Met	"SAFB-like, transcription modulator"	protein-coding
chr20.2861717.-	chr20	2861717	2861718	-	0	NA	"intron (NM_080840, intron 1 of 22)"	AluSc|SINE|Alu	-7575	NM_080840	5786	Hs.269577	NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	"protein tyrosine phosphatase, receptor type, A"	protein-coding
chr7.5610929.+	chr7	5610929	5610930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21507	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr12.127898769.+	chr12	127898769	127898770	+	0	NA	Intergenic	Intergenic	-467393	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr13.114069120.-	chr13	114069120	114069121	-	0	NA	Intergenic	AluSx1|SINE|Alu	-34337	NM_199162	113622	Hs.98669	NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
chr2.237068271.-	chr2	237068271	237068272	-	0	NA	Intergenic	CpG	-8381	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr17.8342604.-	chr17	8342604	8342605	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3434	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr5.175732259.+	chr5	175732259	175732260	+	0	NA	"intron (NM_198567, intron 3 of 8)"	SVA_F|Other|Other	56550	NM_001079685	57179	Hs.743257	NM_001079684	ENSG00000122203	KIAA1191	p60MONOX	KIAA1191	protein-coding
chr14.105736139.+	chr14	105736139	105736140	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20398	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr16.15231543.+	chr16	15231543	15231544	+	0	NA	Intergenic	Intergenic	17316	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	-	microRNA 3180-4	miscRNA
chr7.56143768.-	chr7	56143768	56143769	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11851	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr8.1771622.-	chr8	1771622	1771623	-	0	NA	promoter-TSS (NM_014629)	promoter-TSS (NM_014629)	527	NM_014629	9639	Hs.98594	NM_014629	ENSG00000104728	ARHGEF10	GEF10	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding
chr11.68855363.-	chr11	68855363	68855364	-	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	-39013	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr6.57322555.-	chr6	57322555	57322556	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140133	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr17.21825560.-	chr17	21825560	21825561	-	0	NA	"non-coding (NR_028336, exon 1 of 2)"	"non-coding (NR_028336, exon 1 of 2)"	-190	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr5.74349535.+	chr5	74349535	74349536	+	0	NA	Intergenic	CpG	-22811	NM_016591	51301	Hs.272404	NM_016591	ENSG00000176928	GCNT4	C2GNT3	"glucosaminyl (N-acetyl) transferase 4, core 2"	protein-coding
chrX.9366126.+	chrX	9366126	9366127	+	0	NA	Intergenic	AluY|SINE|Alu	-65209	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr7.157746215.-	chr7	157746215	157746216	-	0	NA	"intron (NM_130842, intron 10 of 21)"	"intron (NM_130842, intron 10 of 21)"	-98938	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr11.120206710.+	chr11	120206710	120206711	+	0	NA	promoter-TSS (NM_015313)	promoter-TSS (NM_015313)	-908	NM_015313	23365	Hs.24598	NM_001198665	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding
chr18.55790669.+	chr18	55790669	55790670	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25896	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr5.1476639.+	chr5	1476639	1476640	+	0	NA	"intron (NM_024830, intron 9 of 13)"	MER5A|DNA|hAT-Charlie	-31096	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr2.229496715.-	chr2	229496715	229496716	-	0	NA	Intergenic	AluYc|SINE|Alu	450354	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr10.35559773.+	chr10	35559773	35559774	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23820	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr16.12223904.-	chr16	12223904	12223905	-	0	NA	"intron (NM_032167, intron 13 of 20)"	AluSc8|SINE|Alu	-153302	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr5.141558690.+	chr5	141558690	141558691	+	0	NA	Intergenic	AluSg|SINE|Alu	70366	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr19.9311334.-	chr19	9311334	9311335	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14213	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr9.76966057.+	chr9	76966057	76966058	+	0	NA	Intergenic	AluSp|SINE|Alu	-146195	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr7.13141802.+	chr7	13141802	13141803	+	0	NA	Intergenic	SVA_D|Other|Other	414891	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr16.77246816.+	chr16	77246816	77246817	+	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	13467	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr2.55647035.+	chr2	55647035	55647036	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	22	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr2.10916535.-	chr2	10916535	10916536	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36425	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr3.85080925.+	chr3	85080925	85080926	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72792	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr8.67618038.+	chr8	67618038	67618039	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6615	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr2.178267553.-	chr2	178267553	178267554	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10082	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr12.116724251.+	chr12	116724251	116724252	+	0	NA	Intergenic	AluY|SINE|Alu	-9260	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr6.169648510.+	chr6	169648510	169648511	+	0	NA	"intron (NM_003247, intron 4 of 22)"	"intron (NM_003247, intron 4 of 22)"	5627	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr14.106359729.-	chr14	106359729	106359730	-	0	NA	Intergenic	Intergenic	24109	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr10.28821804.+	chr10	28821804	28821805	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	382	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr12.56394852.+	chr12	56394852	56394853	+	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	3809	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr9.108210391.-	chr9	108210391	108210392	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-66	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr1.179441176.-	chr1	179441176	179441177	-	0	NA	"intron (NR_073544, intron 16 of 25)"	AluSx3|SINE|Alu	-103908	NM_014625	7827	Hs.412710	NM_014625	ENSG00000116218	NPHS2	PDCN|SRN1	"nephrosis 2, idiopathic, steroid-resistant (podocin)"	protein-coding
chr11.130241845.-	chr11	130241845	130241846	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56694	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chrX.42144954.-	chrX	42144954	42144955	-	0	NA	Intergenic	SVA_D|Other|Other	362667	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr16.1228083.+	chr16	1228083	1228084	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24842	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr11.133788131.+	chr11	133788131	133788132	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16496	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr8.128765008.+	chr8	128765008	128765009	+	0	NA	Intergenic	Intergenic	16693	NM_002467	4609	Hs.202453	NM_002467	ENSG00000136997	MYC	MRTL|bHLHe39|c-Myc	v-myc myelocytomatosis viral oncogene homolog (avian)	protein-coding
chr7.26848797.+	chr7	26848797	26848798	+	0	NA	"intron (NM_003930, intron 4 of 12)"	AluSq2|SINE|Alu	55544	NM_003930	8935	Hs.610137	NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding
chr17.1957094.-	chr17	1957094	1957095	-	0	NA	Intergenic	CpG	1299	NM_006497	3090	Hs.695682	NM_001098202	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	hypermethylated in cancer 1	protein-coding
chr2.128975968.+	chr2	128975968	128975969	+	0	NA	Intergenic	AluSg|SINE|Alu	100203	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr8.143830479.-	chr8	143830479	143830480	-	0	NA	Intergenic	Intergenic	-3473	NM_205545	137797	Hs.441280	NM_205545	ENSG00000197353	LYPD2	LYPDC2|UNQ430	LY6/PLAUR domain containing 2	protein-coding
chr2.48784514.-	chr2	48784514	48784515	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11645	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr2.115948295.+	chr2	115948295	115948296	+	0	NA	"intron (NM_001004360, intron 1 of 25)"	HERVIP10F-int|LTR|ERV1	28611	NM_001004360	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr5.1067381.+	chr5	1067381	1067382	+	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	-4292	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr6.170055416.+	chr6	170055416	170055417	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46743	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr19.34248213.-	chr19	34248213	34248214	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39538	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr12.14396228.+	chr12	14396228	14396229	+	0	NA	Intergenic	AluSc|SINE|Alu	-122383	NM_018179	55729	Hs.591151	NM_018179	ENSG00000171681	ATF7IP	AM|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
chr7.43700986.-	chr7	43700986	43700987	-	0	NA	"intron (NM_018224, intron 1 of 5)"	AluY|SINE|Alu	-68154	NR_047701	55744	Hs.655165	NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae)	protein-coding
chr12.89754107.+	chr12	89754107	89754108	+	0	NA	Intergenic	AluY|SINE|Alu	-7811	NM_022652	1848	Hs.718640	NM_001946	ENSG00000139318	DUSP6	MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chr2.23703119.-	chr2	23703119	23703120	-	0	NA	"intron (NM_052920, intron 2 of 13)"	AluSz|SINE|Alu	-94821	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
chr19.19747633.+	chr19	19747633	19747634	+	0	NA	"intron (NM_016573, intron 12 of 20)"	"intron (NM_016573, intron 12 of 20)"	6822	NM_016573	51291	Hs.49427	NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
chr8.141559331.-	chr8	141559331	141559332	-	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	-37250	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr2.68031690.-	chr2	68031690	68031691	-	0	NA	Intergenic	AluY|SINE|Alu	-258469	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr10.30144979.-	chr10	30144979	30144980	-	0	NA	Intergenic	AluSx3|SINE|Alu	120249	NM_003174	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
chr17.63480270.-	chr17	63480270	63480271	-	0	NA	Intergenic	SVA_D|Other|Other	-77470	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
chr21.45243657.-	chr21	45243657	45243658	-	0	NA	Intergenic	Intergenic	11209	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr16.89034213.-	chr16	89034213	89034214	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9291	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr9.134449919.+	chr9	134449919	134449920	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43257	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chrX.49682929.+	chrX	49682929	49682930	+	0	NA	Intergenic	AluSz|SINE|Alu	-4296	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr3.101188565.-	chr3	101188565	101188566	-	0	NA	"intron (NM_020654, intron 3 of 23)"	AluYb8|SINE|Alu	-43520	NM_001077203	57337	Hs.529551	NM_001077203	ENSG00000138468	SENP7	-	SUMO1/sentrin specific peptidase 7	protein-coding
chr17.37761585.+	chr17	37761585	37761586	+	0	NA	"3' UTR (NM_006160, exon 2 of 2)"	"3' UTR (NM_006160, exon 2 of 2)"	2590	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr20.45936056.-	chr20	45936056	45936057	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11190	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr14.105158922.+	chr14	105158922	105158923	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2979	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr5.168556382.+	chr5	168556382	168556383	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134316	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chr7.51155465.-	chr7	51155465	51155466	-	0	NA	"intron (NM_015198, intron 6 of 12)"	AluSz6|SINE|Alu	-229050	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
chr16.89563002.+	chr16	89563002	89563003	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6033	NM_001256182	29123	Hs.740440	NM_001256182	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain 11	protein-coding
chr1.9832291.+	chr1	9832291	9832292	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52259	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr10.134574092.-	chr10	134574092	134574093	-	0	NA	"intron (NM_005539, intron 11 of 15)"	"intron (NM_005539, intron 11 of 15)"	-25445	NM_177400	84504	Hs.134013	NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
chr3.13921124.+	chr3	13921124	13921125	+	0	NA	"intron (NM_004625, intron 1 of 3)"	CpG	494	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chrX.7012511.+	chrX	7012511	7012512	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53390	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr4.103422429.+	chr4	103422429	103422430	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-57	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr6.139718189.+	chr6	139718189	139718190	+	0	NA	Intergenic	AluY|SINE|Alu	-22402	NM_006079	10370	Hs.82071	NM_001168388	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	"Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2"	protein-coding
chr11.66610572.-	chr11	66610572	66610573	-	0	NA	promoter-TSS (NM_001032279)	promoter-TSS (NM_001032279)	311	NM_001032279	9986	Hs.654972	NM_001032279	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	"RCE1 homolog, prenyl protein protease (S. cerevisiae)"	protein-coding
chr15.75701819.+	chr15	75701819	75701820	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	-40851	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr5.132149660.-	chr5	132149660	132149661	-	0	NA	"exon (NM_175873, exon 1 of 1)"	"exon (NM_175873, exon 1 of 1)"	-627	NM_175873	134548	Hs.13308	NM_175873	ENSG00000198944	SOWAHA	ANKRD43	sosondowah ankyrin repeat domain family member A	protein-coding
chr2.229496726.+	chr2	229496726	229496727	+	0	NA	Intergenic	AluYc|SINE|Alu	-450365	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr7.3124526.-	chr7	3124526	3124527	-	0	NA	Intergenic	LTR1|LTR|ERV1	41017	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr12.112407439.-	chr12	112407439	112407440	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43584	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr10.134034463.-	chr10	134034463	134034464	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34049	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr2.30144475.-	chr2	30144475	30144476	-	0	NA	promoter-TSS (NM_004304)	promoter-TSS (NM_004304)	-2	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr1.161393145.+	chr1	161393145	161393146	+	0	NA	Intergenic	SVA_D|Other|Other	-55472	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chr2.48010450.+	chr2	48010450	48010451	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	229	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr16.23561916.+	chr16	23561916	23561917	+	0	NA	"intron (NR_003501, intron 2 of 9)"	AluY|SINE|Alu	6780	NR_003501	124454	Hs.620541	NM_001083614	ENSG00000103356	EARS2	COXPD12|MSE1	"glutamyl-tRNA synthetase 2, mitochondrial"	protein-coding
chr22.50480126.-	chr22	50480126	50480127	-	0	NA	Intergenic	Intergenic	29071	NM_001001694	400935	Hs.526712	NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E-like	protein-coding
chr18.44929240.-	chr18	44929240	44929241	-	0	NA	Intergenic	Intergenic	226495	NM_016097	51124	Hs.130917	NM_016097	ENSG00000134049	IER3IP1	MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
chr12.110821749.-	chr12	110821749	110821750	-	0	NA	"intron (NM_016238, intron 6 of 10)"	AluSg4|SINE|Alu	-19786	NM_001137664	51434	Hs.719935	NM_001137664	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
chr14.105736143.-	chr14	105736143	105736144	-	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	20402	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr6.57322542.+	chr6	57322542	57322543	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140120	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr10.43914837.+	chr10	43914837	43914838	+	0	NA	Intergenic	AluY|SINE|Alu	-10141	NM_001098204	3185	Hs.712955	NM_001098204	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
chr2.240187900.-	chr2	240187900	240187901	-	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	39257	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr9.128172962.-	chr9	128172962	128172963	-	0	NA	Intergenic	MIRb|SINE|MIR	-148851	NM_015635	26130	Hs.495134	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
chr15.55726778.+	chr15	55726778	55726779	+	0	NA	"intron (NR_037923, intron 7 of 15)"	BC200|scRNA|scRNA	26055	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr3.41240338.-	chr3	41240338	41240339	-	0	NA	promoter-TSS (NM_001904)	promoter-TSS (NM_001904)	604	NM_001904	1499	Hs.476018	NM_001098209	ENSG00000168036	CTNNB1	CTNNB|MRD19|armadillo	"catenin (cadherin-associated protein), beta 1, 88kDa"	protein-coding
chr1.171662939.-	chr1	171662939	171662940	-	0	NA	Intergenic	SVA_C|Other|Other	41166	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr5.31622030.+	chr5	31622030	31622031	+	0	NA	Intergenic	AluSq|SINE|Alu	89657	NM_018356	55322	Hs.519246	NM_018356	ENSG00000082213	C5orf22	-	chromosome 5 open reading frame 22	protein-coding
chr11.67346425.+	chr11	67346425	67346426	+	0	NA	Intergenic	AluY|SINE|Alu	-4641	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr2.70199646.+	chr2	70199646	70199647	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10249	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr17.1702424.+	chr17	1702424	1702425	+	0	NA	"intron (NM_052928, intron 5 of 10)"	AluYc|SINE|Alu	30751	NM_052928	114826	Hs.514602	NM_052928	ENSG00000186532	SMYD4	ZMYND21	SET and MYND domain containing 4	protein-coding
chr3.29051408.+	chr3	29051408	29051409	+	0	NA	Intergenic	AluSc8|SINE|Alu	-271395	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chrY.13464390.+	chrY	13464390	13464391	+	0	NA	Intergenic	LSAU|Satellite|Satellite	1068999	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr15.91599301.+	chr15	91599301	91599302	+	0	NA	Intergenic	Intergenic	-33468	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr22.41344568.+	chr22	41344568	41344569	+	0	NA	Intergenic	AluSx|SINE|Alu	-2783	NM_014248	9978	Hs.474949	NM_014248		RBX1	BA554C12.1|RNF75|ROC1	"ring-box 1, E3 ubiquitin protein ligase"	protein-coding
chrX.15780405.-	chrX	15780405	15780406	-	0	NA	"intron (NM_007220, intron 2 of 7)"	"intron (NM_007220, intron 2 of 7)"	-23993	NM_007220	11238	Hs.744128	NM_007220	ENSG00000169239	CA5B	CA-VB	"carbonic anhydrase VB, mitochondrial"	protein-coding
chr1.91173030.+	chr1	91173030	91173031	+	0	NA	Intergenic	Intergenic	9764	NM_020063	343472	Hs.451956	NM_020063		BARHL2	-	BarH-like homeobox 2	protein-coding
chr11.2213904.+	chr11	2213904	2213905	+	0	NA	Intergenic	Intergenic	19611	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr13.81676517.-	chr13	81676517	81676518	-	0	NA	Intergenic	SVA_D|Other|Other	761431	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr4.40196280.+	chr4	40196280	40196281	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2247	NM_004310	399	Hs.654594	NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
chr8.82598454.+	chr8	82598454	82598455	+	0	NA	"intron (NM_001144878, intron 1 of 9)"	CpG	135	NM_005536	3612	Hs.656694	NM_001144878		IMPA1	IMP|IMPA	inositol(myo)-1(or 4)-monophosphatase 1	protein-coding
chr5.8479655.+	chr5	8479655	8479656	+	0	NA	Intergenic	AluY|SINE|Alu	18617	NR_039663	100616142		NR_039663	ENSG00000266471	MIR4458	-	microRNA 4458	miscRNA
chrX.40029665.-	chrX	40029665	40029666	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6917	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.21734813.-	chr19	21734813	21734814	-	0	NA	Intergenic	SVA_D|Other|Other	-46376	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr9.133797642.-	chr9	133797642	133797643	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-16597	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr8.144406729.-	chr8	144406729	144406730	-	0	NA	"exon (NM_052963, exon 6 of 14)"	"exon (NM_052963, exon 6 of 14)"	-10332	NM_052963	116447	Hs.528574	NM_001258446	ENSG00000184428	TOP1MT	-	"topoisomerase (DNA) I, mitochondrial"	protein-coding
chr3.57630918.-	chr3	57630918	57630919	-	0	NA	"intron (NM_152678, intron 11 of 19)"	AluSg|SINE|Alu	47703	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
chr19.40696445.+	chr19	40696445	40696446	+	0	NA	Intergenic	AluSx|SINE|Alu	-1206	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr3.46792406.+	chr3	46792406	46792407	+	0	NA	Intergenic	CpG	-6161	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr4.1872277.+	chr4	1872277	1872278	+	0	NA	promoter-TSS (NM_001042424)	promoter-TSS (NM_001042424)	-846	NM_001042424	7468	Hs.113876	NM_001042424	ENSG00000109685	WHSC1	MMSET|NSD2|REIIBP|TRX5|WHS	Wolf-Hirschhorn syndrome candidate 1	protein-coding
chr7.139162659.+	chr7	139162659	139162660	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5798	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr20.30161024.-	chr20	30161024	30161025	-	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	-42	NR_046853	100874042	Hs.743198	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	miscRNA
chrX.144902984.+	chrX	144902984	144902985	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	118	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr11.83150129.+	chr11	83150129	83150130	+	0	NA	Intergenic	AluSx|SINE|Alu	-152752	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chrX.29584320.-	chrX	29584320	29584321	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649355	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr2.54504588.-	chr2	54504588	54504589	-	0	NA	"intron (NM_138448, intron 3 of 3)"	AluSg|SINE|Alu	21179	NM_001003937	388951	Hs.620508	NM_001003937	ENSG00000178021	TSPYL6	-	TSPY-like 6	protein-coding
chr7.1277247.+	chr7	1277247	1277248	+	0	NA	TTS (NM_001080461)	TTS (NM_001080461)	4593	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr1.10989814.+	chr1	10989814	10989815	+	0	NA	Intergenic	AluSq|SINE|Alu	52280	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chr20.62127534.-	chr20	62127534	62127535	-	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	-3134	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chrX.133639188.+	chrX	133639188	133639189	+	0	NA	Intergenic	AluSx|SINE|Alu	35104	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr20.47088236.-	chr20	47088236	47088237	-	0	NA	Intergenic	Intergenic	-99582	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr12.50621184.+	chr12	50621184	50621185	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4696	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr7.128141924.-	chr7	128141924	128141925	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25141	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr2.113642133.-	chr2	113642133	113642134	-	0	NA	Intergenic	AluJb|SINE|Alu	28415	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr8.26541442.+	chr8	26541442	26541443	+	0	NA	Intergenic	SVA_A|Other|Other	105521	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr22.30781374.+	chr22	30781374	30781375	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1928	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr17.78559323.+	chr17	78559323	78559324	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40698	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr17.74524724.+	chr17	74524724	74524725	+	0	NA	"intron (NM_134268, intron 3 of 3)"	"intron (NM_134268, intron 3 of 3)"	1056	NR_033357	768206	Hs.743588	NM_001077620		PRCD	RP36	progressive rod-cone degeneration	protein-coding
chr12.107215664.-	chr12	107215664	107215665	-	0	NA	"intron (NM_018157, intron 3 of 8)"	AluY|SINE|Alu	47055	NR_040246	100287944	Hs.742087	NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	miscRNA
chr21.46737116.-	chr21	46737116	46737117	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29149	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr5.91967015.+	chr5	91967015	91967016	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939484	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr19.49060898.-	chr19	49060898	49060899	-	0	NA	"intron (NM_177973, intron 1 of 6)"	AluSp|SINE|Alu	-5469	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr19.49186341.-	chr19	49186341	49186342	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10077	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr6.168219498.-	chr6	168219498	168219499	-	0	NA	Intergenic	AluSp|SINE|Alu	-7978	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr21.41861467.-	chr21	41861467	41861468	-	0	NA	"intron (NM_001389, intron 3 of 32)"	AluYa5|SINE|Alu	-106456	NR_038899	100506492	Hs.667053	NR_038896	ENSG00000235123	DSCAM-AS1	M41	DSCAM antisense RNA 1	miscRNA
chr9.14830715.+	chr9	14830715	14830716	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51184	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr4.18024028.+	chr4	18024028	18024029	+	0	NA	promoter-TSS (NM_153686)	promoter-TSS (NM_153686)	-545	NM_153686	254251	Hs.677572	NM_001166139	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor-like	protein-coding
chr11.61724472.-	chr11	61724472	61724473	-	0	NA	"intron (NM_001139443, intron 4 of 8)"	"intron (NM_001139443, intron 4 of 8)"	-7116	NM_001139443	7439	Hs.712676	NM_001139443	ENSG00000167995	BEST1	ARB|BEST|BMD|RP50|TU15B|VMD2	bestrophin 1	protein-coding
chr2.101959042.-	chr2	101959042	101959043	-	0	NA	Intergenic	Intergenic	-33130	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	miscRNA
chr11.67351061.+	chr11	67351061	67351062	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-5	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr12.8830979.+	chr12	8830979	8830980	+	0	NA	Intergenic	AluSp|SINE|Alu	-15546	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr15.78891310.-	chr15	78891310	78891311	-	0	NA	"intron (NR_046313, intron 5 of 7)"	AluSx|SINE|Alu	-22327	NM_001166694	1136	Hs.89605	NM_000743	ENSG00000080644	CHRNA3	LNCR2|NACHRA3|PAOD2	"cholinergic receptor, nicotinic, alpha 3 (neuronal)"	protein-coding
chr10.55061359.+	chr10	55061359	55061360	+	0	NA	Intergenic	AluSq2|SINE|Alu	-529899	NM_000242	4153	Hs.499674	NM_000242	ENSG00000165471	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	"mannose-binding lectin (protein C) 2, soluble"	protein-coding
chrX.153736356.+	chrX	153736356	153736357	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8210	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr19.13976815.-	chr19	13976815	13976816	-	0	NA	Intergenic	CpG	8698	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	miscRNA
chr18.12734521.-	chr18	12734521	12734522	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31534	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr1.97228896.+	chr1	97228896	97228897	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41721	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr19.17895628.-	chr19	17895628	17895629	-	0	NA	"exon (NM_001161357, exon 26 of 29)"	"exon (NM_001161357, exon 26 of 29)"	10291	NM_014256	10331	Hs.657825	NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3"	protein-coding
chr3.49368418.-	chr3	49368418	49368419	-	0	NA	"intron (NM_001251877, intron 2 of 6)"	AluY|SINE|Alu	-9118	NM_001251877	7375	Hs.403828	NM_001251877	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
chr4.1358132.-	chr4	1358132	1358133	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17028	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr7.155251676.-	chr7	155251676	155251677	-	0	NA	"exon (NM_001427, exon 1 of 2)"	"exon (NM_001427, exon 1 of 2)"	-852	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr8.120878173.-	chr8	120878173	120878174	-	0	NA	Intergenic	AluSx1|SINE|Alu	7727	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr13.103249733.-	chr13	103249733	103249734	-	0	NA	"intron (NM_003291, intron 1 of 28)"	CpG	-447	NM_003291	7174	Hs.432424	NM_003291	ENSG00000134900	TPP2	TPP-2	tripeptidyl peptidase II	protein-coding
chr10.135270808.-	chr10	135270808	135270809	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3376	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr17.78559341.+	chr17	78559341	78559342	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40716	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr11.62551754.-	chr11	62551754	62551755	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluSc|SINE|Alu	3120	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr5.1494496.-	chr5	1494496	1494497	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29580	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr15.56001228.+	chr15	56001228	56001229	+	0	NA	"intron (NM_173814, intron 2 of 19)"	AluSx3|SINE|Alu	33949	NM_173814	283659	Hs.130957	NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
chr12.8830996.+	chr12	8830996	8830997	+	0	NA	Intergenic	AluSp|SINE|Alu	-15563	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr6.109611747.+	chr6	109611747	109611748	+	0	NA	Intergenic	CpG	-3759	NR_028595	221262	Hs.723571	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	"coiled-coil domain containing 162, pseudogene"	pseudo
chr1.101786825.+	chr1	101786825	101786826	+	0	NA	Intergenic	AluY|SINE|Alu	19626	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr2.213546663.+	chr2	213546663	213546664	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143311	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr2.202046030.+	chr2	202046030	202046031	+	0	NA	Intergenic	AluSz|SINE|Alu	-1591	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr15.79153980.-	chr15	79153980	79153981	-	0	NA	Intergenic	AluSg|SINE|Alu	11143	NM_001265603	10933	Hs.374503	NM_001265603	ENSG00000185787	MORF4L1	Eaf3|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
chr1.226350812.-	chr1	226350812	226350813	-	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	-23611	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr1.54775801.-	chr1	54775801	54775802	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96178	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr14.101693731.+	chr14	101693731	101693732	+	0	NA	Intergenic	Intergenic	157483	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr13.88664948.-	chr13	88664948	88664949	-	0	NA	Intergenic	AluSx1|SINE|Alu	-340078	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr2.44380945.-	chr2	44380945	44380946	-	0	NA	Intergenic	AluY|SINE|Alu	15055	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr2.242500471.+	chr2	242500471	242500472	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1913	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr16.70133255.-	chr16	70133255	70133256	-	0	NA	Intergenic	AluY|SINE|Alu	14274	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr12.58059376.-	chr12	58059376	58059377	-	0	NA	Intergenic	SVA_A|Other|Other	28362	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr8.60674719.-	chr8	60674719	60674720	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519235	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr7.811055.-	chr7	811055	811056	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43742	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr22.40782016.+	chr22	40782016	40782017	+	0	NA	"intron (NM_015705, intron 1 of 21)"	AluJb|SINE|Alu	15421	NM_015705	27352	Hs.474914	NM_015705	ENSG00000100359	SGSM3	MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5	small G protein signaling modulator 3	protein-coding
chr14.23233322.-	chr14	23233322	23233323	-	0	NA	Intergenic	FLAM_C|SINE|Alu	2409	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr12.133328261.+	chr12	133328261	133328262	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10190	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr4.185174238.+	chr4	185174238	185174239	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35124	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr22.49833055.+	chr22	49833055	49833056	+	0	NA	Intergenic	AluSx|SINE|Alu	218135	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr8.68855792.+	chr8	68855792	68855793	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8811	NM_024870	80243	Hs.591867	NM_024870		PREX2	6230420N16Rik|DEP.2|DEPDC2|P-REX2	"phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2"	protein-coding
chr17.47413983.+	chr17	47413983	47413984	+	0	NA	"intron (NM_014897, intron 1 of 5)"	AluSz|SINE|Alu	25493	NM_001145365	22834	Hs.463375	NM_001145365		ZNF652	-	zinc finger protein 652	protein-coding
chr5.373847.-	chr5	373847	373848	-	0	NA	"intron (NM_001242412, intron 3 of 10)"	CpG	-69411	NM_138464	116349	Hs.446702	NM_138464	ENSG00000221990	C5orf55	-	chromosome 5 open reading frame 55	protein-coding
chr8.100844211.-	chr8	100844211	100844212	-	0	NA	"intron (NM_017890, intron 51 of 61)"	AluSz|SINE|Alu	-62031	NM_004374	1345	Hs.351875	NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit VIc	protein-coding
chr8.141030023.+	chr8	141030023	141030024	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314724	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr15.41539505.-	chr15	41539505	41539506	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16068	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr15.41613488.-	chr15	41613488	41613489	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11331	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr6.152129578.+	chr6	152129578	152129579	+	0	NA	"intron (NM_001122742, intron 3 of 9)"	CpG	764	NM_000125	2099	Hs.208124	NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|Era|NR3A1	estrogen receptor 1	protein-coding
chr13.77954544.-	chr13	77954544	77954545	-	0	NA	Intergenic	AluSc|SINE|Alu	53367	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr22.46522735.+	chr22	46522735	46522736	+	0	NA	Intergenic	Intergenic	13169	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr2.10205162.-	chr2	10205162	10205163	-	0	NA	"intron (NM_001037160, intron 2 of 2)"	AluSz|SINE|Alu	-15376	NM_001037160	192668	Hs.720471	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
chr2.125181220.+	chr2	125181220	125181221	+	0	NA	"intron (NM_130773, intron 4 of 23)"	AluYc|SINE|Alu	398356	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr20.57070914.-	chr20	57070914	57070915	-	0	NA	"intron (NM_153360, intron 1 of 3)"	"intron (NM_153360, intron 1 of 3)"	-19035	NM_153360	164284	Hs.119286	NM_153360	ENSG00000198768	APCDD1L	-	adenomatosis polyposis coli down-regulated 1-like	protein-coding
chr16.14397729.+	chr16	14397729	14397730	+	0	NA	promoter-TSS (NR_030177)	promoter-TSS (NR_030177)	-95	NR_030177	574455		NR_030177	ENSG00000207639	MIR193B	MIRN193B	microRNA 193b	miscRNA
chr5.501512.+	chr5	501512	501513	+	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	23037	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr20.61937563.+	chr20	61937563	61937564	+	0	NA	"intron (NM_020882, intron 5 of 35)"	CpG	13025	NM_020882	57642	Hs.271285	NM_020882	ENSG00000101203	COL20A1	bA261N11.4	"collagen, type XX, alpha 1"	protein-coding
chr7.99630448.-	chr7	99630448	99630449	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluY|SINE|Alu	16969	NM_145914	7589	Hs.632294	NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
chr3.61188809.+	chr3	61188809	61188810	+	0	NA	"intron (NM_001166243, intron 1 of 9)"	AluY|SINE|Alu	48324	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr9.11197034.-	chr9	11197034	11197035	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584311	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr17.17184403.-	chr17	17184403	17184404	-	0	NA	promoter-TSS (NM_001199125)	promoter-TSS (NM_001199125)	-214	NM_003653	8533	Hs.6076	NM_001199125	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
chr7.36192839.-	chr7	36192839	36192840	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	-3	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr3.129082316.-	chr3	129082316	129082317	-	0	NA	Intergenic	SVA_D|Other|Other	-33875	NR_002992	677797	Hs.711399	NR_002992	ENSG00000207088	SNORA7B	ACA7B	"small nucleolar RNA, H/ACA box 7B"	snoRNA
chr8.20290399.+	chr8	20290399	20290400	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	157115	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	miscRNA
chr7.95234913.+	chr7	95234913	95234914	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8988	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr2.120964338.+	chr2	120964338	120964339	+	0	NA	Intergenic	Intergenic	16646	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr14.64299483.+	chr14	64299483	64299484	+	0	NA	Intergenic	AluJb|SINE|Alu	-20200	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr4.8032003.+	chr4	8032003	8032004	+	0	NA	"intron (NM_001130083, intron 10 of 20)"	"intron (NM_001130083, intron 10 of 20)"	-90350	NM_001134647	60312	Hs.529369	NM_001134647	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
chr17.57884650.-	chr17	57884650	57884651	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33977	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr20.62657599.-	chr20	62657599	62657600	-	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	8098	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr12.105389734.-	chr12	105389734	105389735	-	0	NA	Intergenic	AluY|SINE|Alu	-9636	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr12.96314628.-	chr12	96314628	96314629	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21800	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr17.12110601.+	chr17	12110601	12110602	+	0	NA	Intergenic	AluY|SINE|Alu	125385	NR_030613	100126313		NR_030613		MIR744	MIRN744|hsa-mir-744	microRNA 744	miscRNA
chr22.42307973.+	chr22	42307973	42307974	+	0	NA	"intron (NM_001207020, intron 1 of 3)"	AluSx1|SINE|Alu	2698	NM_001207020	440829	Hs.526704	NM_001207020		SHISA8	C22orf17|Orf26	shisa homolog 8 (Xenopus laevis)	protein-coding
chr4.49324970.-	chr4	49324970	49324971	-	0	NA	Intergenic	ACRO1|Satellite|acro	-336705	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr7.151129107.-	chr7	151129107	151129108	-	0	NA	"intron (NM_144727, intron 3 of 3)"	"intron (NM_144727, intron 3 of 3)"	-1618	NR_037468	100500835		NR_037468		MIR3907	-	microRNA 3907	miscRNA
chrX.71458672.-	chrX	71458672	71458673	-	0	NA	"intron (NM_017669, intron 1 of 1)"	CpG	-186	NM_017669	54821	Hs.47558	NM_001009954	ENSG00000186871	ERCC6L	PICH|RAD26L	"excision repair cross-complementing rodent repair deficiency, complementation group 6-like"	protein-coding
chr4.109522152.+	chr4	109522152	109522153	+	0	NA	"intron (NR_026968, intron 1 of 3)"	AluSx1|SINE|Alu	19461	NR_026968	285456	Hs.683863	NM_182591	ENSG00000234492	RPL34-AS1	-	RPL34 antisense RNA 1 (head to head)	miscRNA
chr9.16855796.-	chr9	16855796	16855797	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14990	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr6.2221771.+	chr6	2221771	2221772	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24097	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr1.12040470.+	chr1	12040470	12040471	+	0	NA	"5' UTR (NM_014874, exon 1 of 19)"	"5' UTR (NM_014874, exon 1 of 19)"	232	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr17.73615817.+	chr17	73615817	73615818	+	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	-13697	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr21.47838711.-	chr21	47838711	47838712	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40151	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr6.157734056.+	chr6	157734056	157734057	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11197	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr12.89747574.-	chr12	89747574	89747575	-	0	NA	Intergenic	CpG-5623	1278	NM_022652	1848	Hs.718640	NM_001946	ENSG00000139318	DUSP6	MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chr11.64138396.+	chr11	64138396	64138397	+	0	NA	"intron (NM_003942, intron 16 of 16)"	AluSg|SINE|Alu	2322	NR_031602	100302280		NR_031602		MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	miscRNA
chr12.122667615.-	chr12	122667615	122667616	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	52	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr2.109985520.-	chr2	109985520	109985521	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55439	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chrX.689451.-	chrX	689451	689452	-	0	NA	Intergenic	Intergenic	-104372	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr22.46326792.+	chr22	46326792	46326793	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46216	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr4.163164000.-	chr4	163164000	163164001	-	0	NA	Intergenic	AluY|SINE|Alu	78814	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr17.16098657.+	chr17	16098657	16098658	+	0	NA	promoter-TSS (NM_001190440)	promoter-TSS (NM_001190440)	-704	NM_001190438	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr3.80581464.+	chr3	80581464	80581465	+	0	NA	Intergenic	AluSg|SINE|Alu	-764405	NM_002941	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr17.38239330.+	chr17	38239330	38239331	+	0	NA	"intron (NM_199334, intron 4 of 8)"	AluY|SINE|Alu	17648	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr1.163468394.-	chr1	163468394	163468395	-	0	NA	Intergenic	SVA_A|Other|Other	-176671	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr22.23238451.+	chr22	23238451	23238452	+	0	NA	TTS (NM_001256296)	TTS (NM_001256296)	8491	NM_001178126	100423062	Hs.625768	NM_001178126	ENSG00000254709	IGLL5	-	immunoglobulin lambda-like polypeptide 5	protein-coding
chr7.61969283.-	chr7	61969283	61969284	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-795151	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr2.221058176.-	chr2	221058176	221058177	-	0	NA	Intergenic	MER52A|LTR|ERV1	286890	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr9.138370872.+	chr9	138370872	138370873	+	0	NA	promoter-TSS (NM_014811)	promoter-TSS (NM_014811)	-776	NM_014811	9858	Hs.533260	NM_014811	ENSG00000196422	PPP1R26	KIAA0649	"protein phosphatase 1, regulatory subunit 26"	protein-coding
chr2.239047569.+	chr2	239047569	239047570	+	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	206	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr5.137550353.-	chr5	137550353	137550354	-	0	NA	Intergenic	AluY|SINE|Alu	1321	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr22.24237303.+	chr22	24237303	24237304	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	738	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr10.35336395.+	chr10	35336395	35336396	+	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	26863	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr12.133081808.+	chr12	133081808	133081809	+	0	NA	"intron (NM_001142641, intron 1 of 16)"	"intron (NM_001142641, intron 1 of 16)"	14651	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr10.43914863.+	chr10	43914863	43914864	+	0	NA	Intergenic	AluY|SINE|Alu	-10167	NM_001098204	3185	Hs.712955	NM_001098204	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
chr4.54204839.+	chr4	54204839	54204840	+	0	NA	"intron (NM_152540, intron 2 of 8)"	AluYa5|SINE|Alu	27403	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr16.69520805.+	chr16	69520805	69520806	+	0	NA	Intergenic	Intergenic	62307	NM_030579	80777	Hs.461131	NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B (outer mitochondrial membrane)	protein-coding
chr7.100436463.+	chr7	100436463	100436464	+	0	NA	Intergenic	LTR2|LTR|ERV1	-11320	NM_004444	2050	Hs.437008	NM_004444	ENSG00000196411	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
chr12.52417431.-	chr12	52417431	52417432	-	0	NA	"intron (NM_001202233, intron 1 of 7)"	CpG	-815	NM_001202233	3164	Hs.670088	NM_001202233	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	"nuclear receptor subfamily 4, group A, member 1"	protein-coding
chr19.10408173.-	chr19	10408173	10408174	-	0	NA	TTS (NM_003259)	TTS (NM_003259)	-7518	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr1.107720117.+	chr1	107720117	107720118	+	0	NA	"intron (NM_001113226, intron 2 of 7)"	AluSg|SINE|Alu	37372	NM_014917	22854	Hs.732535	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding
chr7.62939971.-	chr7	62939971	62939972	-	0	NA	Intergenic	AluYf4|SINE|Alu	80552	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr3.1144543.+	chr3	1144543	1144544	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9914	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr16.31932519.-	chr16	31932519	31932520	-	0	NA	Intergenic	AluY|SINE|Alu	-47440	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr11.1122335.+	chr11	1122335	1122336	+	0	NA	Intergenic	Intergenic	47460	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr6.4780659.+	chr6	4780659	4780660	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3979	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr22.47162097.+	chr22	47162097	47162098	+	0	NA	"intron (NM_014346, intron 1 of 12)"	AluY|SINE|Alu	3579	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr7.150812774.-	chr7	150812774	150812775	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28948	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr5.39649213.+	chr5	39649213	39649214	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223878	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr6.149069031.-	chr6	149069031	149069032	-	0	NA	"intron (NM_005715, intron 1 of 7)"	CpG	-760	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl-2-sulfotransferase	protein-coding
chr2.52338204.-	chr2	52338204	52338205	-	0	NA	Intergenic	AluY|SINE|Alu	1078530	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr16.46387535.+	chr16	46387535	46387536	+	0	NA	Intergenic	HSATII|Satellite|Satellite	215474	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr14.102954943.-	chr14	102954943	102954944	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21185	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr5.10563616.+	chr5	10563616	10563617	+	0	NA	promoter-TSS (NM_001164440)	promoter-TSS (NM_001164440)	-819	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chr11.67917432.-	chr11	67917432	67917433	-	0	NA	Intergenic	AluJb|SINE|Alu	28574	NM_001277	1119	Hs.77221	NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK	choline kinase alpha	protein-coding
chr3.13876291.+	chr3	13876291	13876292	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45327	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr2.101245773.-	chr2	101245773	101245774	-	0	NA	Intergenic	Intergenic	-66355	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr1.236252184.-	chr1	236252184	236252185	-	0	NA	Intergenic	AluY|SINE|Alu	23703	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr4.185174230.-	chr4	185174230	185174231	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35116	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr15.93372480.-	chr15	93372480	93372481	-	0	NA	Intergenic	AluSg|SINE|Alu	-33766	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr20.60943455.-	chr20	60943455	60943456	-	0	NA	Intergenic	Intergenic	1087	NM_005560	3911	Hs.473256	NM_005560	ENSG00000130702	LAMA5	-	"laminin, alpha 5"	protein-coding
chr8.144124779.-	chr8	144124779	144124780	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4100	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr7.53196224.-	chr7	53196224	53196225	-	0	NA	Intergenic	AluY|SINE|Alu	-92875	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr7.148959578.-	chr7	148959578	148959579	-	0	NA	"intron (NM_001195220, intron 1 of 5)"	CpG	-316	NM_001195220	100289678	Hs.490512	NM_001195220	ENSG00000204946	ZNF783	-	zinc finger family member 783	protein-coding
chr3.47744709.+	chr3	47744709	47744710	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78696	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr16.2759851.+	chr16	2759851	2759852	+	0	NA	TTS (NM_018992)	TTS (NM_018992)	10701	NM_031948	83886	Hs.332878	NM_031948		PRSS27	CAPH2|MPN	"protease, serine 27"	protein-coding
chr19.17585876.+	chr19	17585876	17585877	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4576	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr22.48986374.-	chr22	48986374	48986375	-	0	NA	"intron (NM_015381, intron 1 of 3)"	"intron (NM_015381, intron 1 of 3)"	-14256	NM_015381	25817	Hs.436854	NM_001082967	ENSG00000219438	FAM19A5	QLLK5208|TAFA-5|TAFA5|UNQ5208	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A5"	protein-coding
chr4.86025611.+	chr4	86025611	86025612	+	0	NA	Intergenic	AluY|SINE|Alu	137640	NR_015359	404201	Hs.720920	NR_015359	ENSG00000180769	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	miscRNA
chr15.83365806.-	chr15	83365806	83365807	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12829	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr15.41098707.+	chr15	41098707	41098708	+	0	NA	promoter-TSS (NM_001258420)	promoter-TSS (NM_001258420)	-567	NM_001258421	84936	Hs.121676	NM_001077268	ENSG00000166140	ZFYVE19	MPFYVE	"zinc finger, FYVE domain containing 19"	protein-coding
chr13.46489328.-	chr13	46489328	46489329	-	0	NA	Intergenic	MER52D|LTR|ERV1	63482	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr2.170687947.+	chr2	170687947	170687948	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3929	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr17.73439506.-	chr17	73439506	73439507	-	0	NA	Intergenic	AluSg4|SINE|Alu	13158	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr2.90481145.+	chr2	90481145	90481146	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1366830	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr2.136552135.+	chr2	136552135	136552136	+	0	NA	"intron (NM_002299, intron 14 of 16)"	"intron (NM_002299, intron 14 of 16)"	-25626	NR_045486	100507600	Hs.662020	NR_045486	ENSG00000226806	LOC100507600	-	uncharacterized LOC100507600	miscRNA
chr20.33005196.+	chr20	33005196	33005197	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSp|SINE|Alu	-48934	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr8.113085587.+	chr8	113085587	113085588	+	0	NA	Intergenic	AluYb8|SINE|Alu	-570135	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	miscRNA
chr2.38825087.-	chr2	38825087	38825088	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5091	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr6.142795165.+	chr6	142795165	142795166	+	0	NA	Intergenic	AluSc|SINE|Alu	163808	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr9.37800562.+	chr9	37800562	37800563	+	0	NA	promoter-TSS (NM_024345)	promoter-TSS (NM_024345)	-228	NM_024345	79269	Hs.118394	NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
chr7.155246433.-	chr7	155246433	155246434	-	0	NA	Intergenic	CpG	4391	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr17.57884714.-	chr17	57884714	57884715	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33913	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr2.113642151.+	chr2	113642151	113642152	+	0	NA	Intergenic	AluJb|SINE|Alu	-28397	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr20.20772510.-	chr20	20772510	20772511	-	0	NA	Intergenic	LTR16A2|LTR|ERVL	79244	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr4.55034967.-	chr4	55034967	55034968	-	0	NA	Intergenic	AluSx3|SINE|Alu	60297	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr22.18131976.+	chr22	18131976	18131977	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6452	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr2.43905219.-	chr2	43905219	43905220	-	0	NA	"intron (NM_172069, intron 2 of 29)"	SVA_D|Other|Other	1758	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
chr16.3146811.+	chr16	3146811	3146812	+	0	NA	Intergenic	AluSx|SINE|Alu	-3950	NM_032805	84891	Hs.334515	NM_032805	ENSG00000130182	ZSCAN10	ZNF206	zinc finger and SCAN domain containing 10	protein-coding
chr18.33543847.+	chr18	33543847	33543848	+	0	NA	Intergenic	AluY|SINE|Alu	-8741	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr10.135008721.-	chr10	135008721	135008722	-	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	-34750	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr22.46932361.-	chr22	46932361	46932362	-	0	NA	"exon (NM_014246, exon 1 of 35)"	"exon (NM_014246, exon 1 of 35)"	-706	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr11.3224516.+	chr11	3224516	3224517	+	0	NA	Intergenic	Intergenic	-15046	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr20.32914503.+	chr20	32914503	32914504	+	0	NA	Intergenic	AluSx|SINE|Alu	-14895	NM_001161766	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr1.40052635.+	chr1	40052635	40052636	+	0	NA	Intergenic	AluSq|SINE|Alu	-10114	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr19.38755108.+	chr19	38755108	38755109	+	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	10	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr19.48423017.+	chr19	48423017	48423018	+	0	NA	Intergenic	AluSx1|SINE|Alu	1331	NR_004435	100126798	Hs.579631	NR_004435		SNAR-A1	SNAR-A53113498	small ILF3/NF90-associated RNA A1	snRNA
chr16.8974138.+	chr16	8974138	8974139	+	0	NA	Intergenic	Intergenic	-11275	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr17.7197926.-	chr17	7197926	7197927	-	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	50	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr9.139948484.-	chr9	139948484	139948485	-	0	NA	promoter-TSS (NM_203468)	promoter-TSS (NM_203468)	-19	NM_203468	954	Hs.123036	NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
chr22.18532562.-	chr22	18532562	18532563	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20411	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr13.112726550.-	chr13	112726550	112726551	-	0	NA	TTS (NM_005986)	TTS (NM_005986)	-4637	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr16.67596901.+	chr16	67596901	67596902	+	0	NA	"intron (NM_006565, intron 1 of 11)"	CpG	591	NM_001191022	10664	Hs.368367	NM_001191022	ENSG00000102974	CTCF	-	CCCTC-binding factor (zinc finger protein)	protein-coding
chrX.102023711.+	chrX	102023711	102023712	+	0	NA	promoter-TSS (NR_038988)	promoter-TSS (NR_038988)	-384	NR_038988	100287765	Hs.687084	NR_038988	ENSG00000223546	LINC00630	-	long intergenic non-protein coding RNA 630	miscRNA
chr8.144503712.+	chr8	144503712	144503713	+	0	NA	Intergenic	CpG	8890	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr7.1582135.+	chr7	1582135	1582136	+	0	NA	"3' UTR (NM_002360, exon 3 of 3)"	"3' UTR (NM_002360, exon 3 of 3)"	11767	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr11.47075718.-	chr11	47075718	47075719	-	0	NA	"intron (NM_024113, intron 3 of 8)"	AluY|SINE|Alu	-117467	NM_001003676	79096	Hs.368296	NM_001003676	ENSG00000149179	C11orf49	-	chromosome 11 open reading frame 49	protein-coding
chr12.133808131.-	chr12	133808131	133808132	-	0	NA	"exon (NM_001191054, exon 3 of 9)"	"exon (NM_001191054, exon 3 of 9)"	-4291	NM_001191054	647589	Hs.703008	NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
chr15.41613122.-	chr15	41613122	41613123	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11697	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr22.50580026.+	chr22	50580026	50580027	+	0	NA	"intron (NM_001164104, intron 15 of 25)"	AluJb|SINE|Alu	-5458	NM_001164106	54456	Hs.62880	NM_001164104	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	"Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)"	protein-coding
chr1.54721613.+	chr1	54721613	54721614	+	0	NA	"intron (NM_018070, intron 6 of 16)"	AluSx|SINE|Alu	55773	NM_016491	51253	Hs.584908	NM_016491	ENSG00000116221	MRPL37	L37mt|MRP-L2|MRP-L37|MRPL2|RPML2	mitochondrial ribosomal protein L37	protein-coding
chr1.227015934.-	chr1	227015934	227015935	-	0	NA	Intergenic	Intergenic	42339	NM_012486	5664	Hs.25363	NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
chr9.139401467.-	chr9	139401467	139401468	-	0	NA	"intron (NM_017617, intron 22 of 33)"	CpG-27362	-12611	NR_039820	100616242		NR_039820		MIR4673	-	microRNA 4673	miscRNA
chr5.178157720.-	chr5	178157720	178157721	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	17	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr20.5213518.-	chr20	5213518	5213519	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81497	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr6.55775070.-	chr6	55775070	55775071	-	0	NA	Intergenic	SVA_D|Other|Other	34695	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr5.123857429.+	chr5	123857429	123857430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	223376	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
chr15.69745521.-	chr15	69745521	69745522	-	0	NA	"intron (NM_213725, intron 1 of 2)"	CpG	-362	NM_001003	6176	Hs.356502	NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	"ribosomal protein, large, P1"	protein-coding
chr11.4258923.+	chr11	4258923	4258924	+	0	NA	Intergenic	SVA_B|Other|Other	50541	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr3.196618960.+	chr3	196618960	196618961	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSc8|SINE|Alu	24233	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr16.443626.+	chr16	443626	443627	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3566	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr12.132116778.+	chr12	132116778	132116779	+	0	NA	Intergenic	L1ME1|LINE|L1	-78854	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr4.42658295.-	chr4	42658295	42658296	-	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	-827	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chrX.118871971.-	chrX	118871971	118871972	-	0	NA	Intergenic	AluYc|SINE|Alu	20605	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr16.89034088.+	chr16	89034088	89034089	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9416	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr1.169305355.+	chr1	169305355	169305356	+	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	31831	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr4.989192.+	chr4	989192	989193	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-1968	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr5.22207086.-	chr5	22207086	22207087	-	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	-64625	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr17.14204736.+	chr17	14204736	14204737	+	0	NA	"5' UTR (NM_006041, exon 1 of 2)"	"5' UTR (NM_006041, exon 1 of 2)"	230	NM_006041	9953	Hs.48384	NM_006041		HS3ST3B1	30ST3B1|3OST3B1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding
chr9.139071860.+	chr9	139071860	139071861	+	0	NA	Intergenic	Intergenic	23144	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr9.134449884.-	chr9	134449884	134449885	-	0	NA	Intergenic	AluSx1|SINE|Alu	43222	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr16.625493.+	chr16	625493	625494	+	0	NA	"intron (NM_004204, intron 2 of 10)"	"intron (NM_004204, intron 2 of 10)"	5525	NM_004204	9091	Hs.741878	NM_004204	ENSG00000007541	PIGQ	GPI1|c407A10.1	"phosphatidylinositol glycan anchor biosynthesis, class Q"	protein-coding
chr17.22012683.-	chr17	22012683	22012684	-	0	NA	Intergenic	Intergenic	9754	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr12.121904421.+	chr12	121904421	121904422	+	0	NA	"intron (NM_032590, intron 12 of 22)"	GC_rich|Low_complexity|Low_complexity	66500	NM_194271	80196	Hs.292804	NM_001256858	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	"ring finger protein 34, E3 ubiquitin protein ligase"	protein-coding
chr17.8252952.-	chr17	8252952	8252953	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9764	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr20.34266417.+	chr20	34266417	34266418	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13539	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr9.87285018.+	chr9	87285018	87285019	+	0	NA	"intron (NM_001018064, intron 3 of 19)"	CpG	392	NM_001007097	4915	Hs.712776	NM_001007097	ENSG00000148053	NTRK2	GP145-TrkB|TRKB|trk-B	"neurotrophic tyrosine kinase, receptor, type 2"	protein-coding
chr7.532134.-	chr7	532134	532135	-	0	NA	Intergenic	Intergenic	-27347	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr17.7561720.+	chr17	7561720	7561721	+	0	NA	TTS (NM_001678)	TTS (NM_001678)	7466	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr2.140296479.+	chr2	140296479	140296480	+	0	NA	Intergenic	L1PA3|LINE|L1	641585	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
chr3.9988665.-	chr3	9988665	9988666	-	0	NA	promoter-TSS (NR_046734)	promoter-TSS (NR_046734)	423	NR_046734	100874032	Hs.616388	NR_046734	ENSG00000230082	PRRT3-AS1	-	PRRT3 antisense RNA 1	miscRNA
chr15.63892645.-	chr15	63892645	63892646	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-381	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr19.34538944.+	chr19	34538944	34538945	+	0	NA	Intergenic	AluYc|SINE|Alu	-124408	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr12.112161140.+	chr12	112161140	112161141	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37283	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr10.71044915.-	chr10	71044915	71044916	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15159	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr13.21644948.+	chr13	21644948	21644949	+	0	NA	Intergenic	AluSx|SINE|Alu	-9226	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr10.72224542.+	chr10	72224542	72224543	+	0	NA	Intergenic	AluSx|SINE|Alu	-14022	NM_014431	27143	Hs.202351	NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	"phosphatase domain containing, paladin 1"	protein-coding
chrX.68956257.+	chrX	68956257	68956258	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120346	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr1.151573446.-	chr1	151573446	151573447	-	0	NA	Intergenic	SVA_E|Other|Other	11216	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr8.30590115.+	chr8	30590115	30590116	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4629	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr16.1228102.+	chr16	1228102	1228103	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24861	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr6.168352110.+	chr6	168352110	168352111	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25509	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr11.64879472.+	chr11	64879472	64879473	+	0	NA	TTS (NM_013265)	TTS (NM_013265)	146	NM_003273	7108	Hs.31130	NM_001277233	ENSG00000149809	TM7SF2	ANG1|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
chr7.155246421.-	chr7	155246421	155246422	-	0	NA	Intergenic	CpG	4403	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr2.171830161.-	chr2	171830161	171830162	-	0	NA	Intergenic	CpG	-45125	NM_015530	26003	Hs.431317	NM_001201428	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	"golgi reassembly stacking protein 2, 55kDa"	protein-coding
chr2.10198569.+	chr2	10198569	10198570	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14197	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr9.138397734.+	chr9	138397734	138397735	+	0	NA	Intergenic	Intergenic	5257	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr7.1592366.-	chr7	1592366	1592367	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	-3700	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr3.1144616.+	chr3	1144616	1144617	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9987	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr16.3238705.-	chr16	3238705	3238706	-	0	NA	Intergenic	Intergenic	15542	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr1.59041967.-	chr1	59041967	59041968	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1199	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr7.2943524.-	chr7	2943524	2943525	-	0	NA	Intergenic	Intergenic	59565	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr17.47735115.-	chr17	47735115	47735116	-	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	-20410	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr17.3857925.-	chr17	3857925	3857926	-	0	NA	"intron (NM_174955, intron 1 of 21)"	AluSg|SINE|Alu	-9833	NM_174957	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	"ATPase, Ca++ transporting, ubiquitous"	protein-coding
chr8.21101032.-	chr8	21101032	21101033	-	0	NA	Intergenic	AluYb8|SINE|Alu	-269535	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr19.19932525.+	chr19	19932525	19932526	+	0	NA	promoter-TSS (NM_001145404)	promoter-TSS (NM_001145404)	35	NM_001145404	440515	Hs.351906	NM_001145405		ZNF506	-	zinc finger protein 506	protein-coding
chr5.87348567.+	chr5	87348567	87348568	+	0	NA	Intergenic	L1PA2|LINE|L1	216098	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr1.205674983.-	chr1	205674983	205674984	-	0	NA	Intergenic	AluY|SINE|Alu	25353	NM_033102	85414	Hs.278695	NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	"solute carrier family 45, member 3"	protein-coding
chr13.69610514.+	chr13	69610514	69610515	+	0	NA	Intergenic	AluY|SINE|Alu	-151057	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr2.170666378.+	chr2	170666378	170666379	+	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	11056	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr10.125549461.+	chr10	125549461	125549462	+	0	NA	"intron (NM_198148, intron 6 of 13)"	AluY|SINE|Alu	102039	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr1.21864378.+	chr1	21864378	21864379	+	0	NA	"intron (NM_001127501, intron 1 of 10)"	"intron (NM_001127501, intron 1 of 10)"	28520	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr5.178287368.+	chr5	178287368	178287369	+	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	414	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr5.26787619.+	chr5	26787619	26787620	+	0	NA	Intergenic	AluY|SINE|Alu	251070	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	"cadherin 9, type 2 (T1-cadherin)"	protein-coding
chr9.127267035.+	chr9	127267035	127267036	+	0	NA	"intron (NM_004959, intron 1 of 6)"	CpG-27011	2664	NM_004959	2516	Hs.495108	NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3	"nuclear receptor subfamily 5, group A, member 1"	protein-coding
chr3.49479481.+	chr3	49479481	49479482	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12724	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr1.114299522.+	chr1	114299522	114299523	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2255	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr9.38705451.-	chr9	38705451	38705452	-	0	NA	Intergenic	AluY|SINE|Alu	-84366	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr4.101117840.-	chr4	101117840	101117841	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6185	NM_145244	115265	Hs.480378	NM_145244	ENSG00000145358	DDIT4L	REDD2|Rtp801L	DNA-damage-inducible transcript 4-like	protein-coding
chr8.19626656.-	chr8	19626656	19626657	-	0	NA	Intergenic	AluSx1|SINE|Alu	48262	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr5.1824186.-	chr5	1824186	1824187	-	0	NA	Intergenic	AluSz6|SINE|Alu	-22690	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr19.10408196.+	chr19	10408196	10408197	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7541	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr5.86907783.+	chr5	86907783	86907784	+	0	NA	Intergenic	AluY|SINE|Alu	-198933	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr5.131392215.-	chr5	131392215	131392216	-	0	NA	Intergenic	Intergenic	4132	NM_000588	3562	Hs.694	NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	"interleukin 3 (colony-stimulating factor, multiple)"	protein-coding
chr11.915989.-	chr11	915989	915990	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	931	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr15.20244654.+	chr15	20244654	20244655	+	0	NA	Intergenic	AluSp|SINE|Alu	-243343	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr12.127898768.+	chr12	127898768	127898769	+	0	NA	Intergenic	Intergenic	-467394	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr4.26862513.+	chr4	26862513	26862514	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	200	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr11.5315868.-	chr11	5315868	5315869	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7308	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr21.42487565.-	chr21	42487565	42487566	-	0	NA	Intergenic	AluY|SINE|Alu	-32426	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	miscRNA
chr1.21684524.-	chr1	21684524	21684525	-	0	NA	Intergenic	AluY|SINE|Alu	12490	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr10.65262254.+	chr10	65262254	65262255	+	0	NA	Intergenic	AluY|SINE|Alu	-18869	NM_001001330	221035	Hs.499833	NM_001001330	ENSG00000165476	REEP3	C10orf74	receptor accessory protein 3	protein-coding
chr17.1373359.-	chr17	1373359	1373360	-	0	NA	"intron (NM_001080779, intron 24 of 31)"	"intron (NM_001080779, intron 24 of 31)"	13798	NM_005206	1398	Hs.461896	NM_005206	ENSG00000167193	CRK	CRKII|p38	v-crk sarcoma virus CT10 oncogene homolog (avian)	protein-coding
chr2.241123429.+	chr2	241123429	241123430	+	0	NA	Intergenic	Intergenic	-43356	NM_148961	150677	Hs.148586	NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
chr9.4666433.+	chr9	4666433	4666434	+	0	NA	"intron (NM_001039395, intron 1 of 10)"	"intron (NM_001039395, intron 1 of 10)"	241	NM_001039395	55064	Hs.179615	NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6-like	protein-coding
chr10.134216459.+	chr10	134216459	134216460	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5757	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr3.14349501.+	chr3	14349501	14349502	+	0	NA	Intergenic	Intergenic	-94605	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr14.103988594.+	chr14	103988594	103988595	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	602	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr4.989209.+	chr4	989209	989210	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-1985	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr2.43254205.+	chr2	43254205	43254206	+	0	NA	Intergenic	Intergenic	199540	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr19.2400828.+	chr19	2400828	2400829	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11044	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr2.38763489.+	chr2	38763489	38763490	+	0	NA	Intergenic	CpG	66689	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr17.1133524.+	chr17	1133524	1133525	+	0	NA	Intergenic	CpG	-40334	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr7.87681580.-	chr7	87681580	87681581	-	0	NA	"intron (NM_004194, intron 3 of 28)"	AluY|SINE|Alu	-118014	NM_021721	53616	Hs.256398	NM_004194	ENSG00000008277	ADAM22	ADAM 22|MDC2	ADAM metallopeptidase domain 22	protein-coding
chrX.122993618.-	chrX	122993618	122993619	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	44	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr2.212542108.-	chr2	212542108	212542109	-	0	NA	"intron (NM_005235, intron 13 of 27)"	AluSp|SINE|Alu	-748976	NR_031643	100313771		NR_031643		MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	miscRNA
chr12.109325577.+	chr12	109325577	109325578	+	0	NA	"intron (NM_018711, intron 10 of 14)"	AluY|SINE|Alu	51720	NM_001917	1610	Hs.113227	NM_001917	ENSG00000110887	DAO	DAAO|DAMOX|OXDA	D-amino-acid oxidase	protein-coding
chr19.2307932.-	chr19	2307932	2307933	-	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	-224	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr5.174488869.+	chr5	174488869	174488870	+	0	NA	Intergenic	AluSx1|SINE|Alu	-66135	NR_046113	441116	Hs.533036	NM_001004348	ENSG00000204754	FLJ16171	-	FLJ16171 protein	miscRNA
chr2.43253938.-	chr2	43253938	43253939	-	0	NA	Intergenic	Intergenic	-199807	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr2.128975989.+	chr2	128975989	128975990	+	0	NA	Intergenic	AluSg|SINE|Alu	100182	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr12.117605440.-	chr12	117605440	117605441	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22860	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr9.129229402.+	chr9	129229402	129229403	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56619	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr7.2943537.+	chr7	2943537	2943538	+	0	NA	Intergenic	Intergenic	-59578	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr10.127462236.-	chr10	127462236	127462237	-	0	NA	"intron (NM_147191, intron 2 of 6)"	CpG	-2154	NM_147191	118856	Hs.314141	NM_147191	ENSG00000154485	MMP21	-	matrix metallopeptidase 21	protein-coding
chr10.128174269.-	chr10	128174269	128174270	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35741	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr13.51885862.-	chr13	51885862	51885863	-	0	NA	Intergenic	AluSx|SINE|Alu	29306	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr5.148988227.-	chr5	148988227	148988228	-	0	NA	"intron (NM_001001669, intron 3 of 12)"	AluSg|SINE|Alu	-27092	NM_001001669	389337	Hs.256206	NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding
chr17.8906526.+	chr17	8906526	8906527	+	0	NA	Intergenic	CpG	-18333	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr14.102954958.+	chr14	102954958	102954959	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21170	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr1.228733821.-	chr1	228733821	228733822	-	0	NA	Intergenic	HSAT4|Satellite|centr	46573	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr10.44501187.-	chr10	44501187	44501188	-	0	NA	Intergenic	CpG	-96435	NR_033846	283033	Hs.730228	NR_033846		LINC00841	-	long intergenic non-protein coding RNA 841	miscRNA
chr12.106606572.+	chr12	106606572	106606573	+	0	NA	Intergenic	L1PA7|LINE|L1	35141	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr3.138566725.-	chr3	138566725	138566726	-	0	NA	Intergenic	AluY|SINE|Alu	88524	NM_006219	5291	Hs.239818	NM_001256045		PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	"phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta"	protein-coding
chr9.129229407.-	chr9	129229407	129229408	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56624	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr14.64299472.+	chr14	64299472	64299473	+	0	NA	Intergenic	AluJb|SINE|Alu	-20211	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr5.166327488.+	chr5	166327488	166327489	+	0	NA	Intergenic	AluY|SINE|Alu	-384355	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr17.7232536.+	chr17	7232536	7232537	+	0	NA	"exon (NM_032442, exon 1 of 29)"	"exon (NM_032442, exon 1 of 29)"	102	NM_001005408	84461	Hs.654794	NM_001005408	ENSG00000215041	NEURL4	-	neuralized homolog 4 (Drosophila)	protein-coding
chr19.14096047.-	chr19	14096047	14096048	-	0	NA	"intron (NM_002918, intron 2 of 20)"	AluSz6|SINE|Alu	-21087	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chr5.112263725.+	chr5	112263725	112263726	+	0	NA	Intergenic	AluY|SINE|Alu	-5694	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr17.15122383.-	chr17	15122383	15122384	-	0	NA	Intergenic	AluY|SINE|Alu	-32630	NR_039884	100616125		NR_039884		MIR4731	-	microRNA 4731	miscRNA
chr7.1221366.+	chr7	1221366	1221367	+	0	NA	Intergenic	Intergenic	-21511	NM_182491	90637	Hs.648111	NM_182491	ENSG00000178381	ZFAND2A	AIRAP	"zinc finger, AN1-type domain 2A"	protein-coding
chr2.38595164.-	chr2	38595164	38595165	-	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	-9268	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr6.12012455.+	chr6	12012455	12012456	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-269	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr22.22259621.-	chr22	22259621	22259622	-	0	NA	Intergenic	AluSq2|SINE|Alu	37651	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr19.57148749.-	chr19	57148749	57148750	-	0	NA	Intergenic	AluY|SINE|Alu	5778	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
chr14.90524026.+	chr14	90524026	90524027	+	0	NA	Intergenic	AluY|SINE|Alu	-4082	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr1.7952832.+	chr1	7952832	7952833	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39281	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr3.114903139.+	chr3	114903139	114903140	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37012	NM_015642	26137	Hs.655108	NM_001164342	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
chr17.45897166.-	chr17	45897166	45897167	-	0	NA	"intron (NM_145798, intron 3 of 22)"	"intron (NM_145798, intron 3 of 22)"	-1981	NM_145798	114881	Hs.463320	NM_145798	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
chr19.17445381.-	chr19	17445381	17445382	-	0	NA	promoter-TSS (NM_001195422)	promoter-TSS (NM_001195422)	-257	NM_020959	57719	Hs.590990	NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
chr6.132823911.+	chr6	132823911	132823912	+	0	NA	"intron (NM_003569, intron 2 of 9)"	AluY|SINE|Alu	10426	NM_003569	8417	Hs.605992	NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
chr5.1300313.+	chr5	1300313	1300314	+	0	NA	Intergenic	Intergenic	-5151	NM_198253	7015	Hs.492203	NM_001193376	ENSG00000164362	TERT	DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
chrX.81762801.+	chrX	81762801	81762802	+	0	NA	Intergenic	AluY|SINE|Alu	-1000468	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr7.5257601.+	chr7	5257601	5257602	+	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	3701	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr17.40536618.-	chr17	40536618	40536619	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3787	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr17.80674956.-	chr17	80674956	80674957	-	0	NA	"intron (NM_024619, intron 1 of 5)"	CpG	-374	NM_024619	79672	Hs.31431	NM_024619	ENSG00000141560	FN3KRP	FN3KL	fructosamine 3 kinase related protein	protein-coding
chr19.47142060.-	chr19	47142060	47142061	-	0	NA	Intergenic	Intergenic	4121	NM_033258	94235	Hs.283961	NM_033258	ENSG00000167414	GNG8	-	"guanine nucleotide binding protein (G protein), gamma 8"	protein-coding
chr2.213402711.+	chr2	213402711	213402712	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	641	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chrM.146.+	chrM	146	147	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr22.24237216.+	chr22	24237216	24237217	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	651	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr18.29434791.-	chr18	29434791	29434792	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88300	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr4.9382781.+	chr4	9382781	9382782	+	0	NA	Intergenic	CpG	13181	NR_027279	391622	Hs.722658	NR_027279	ENSG00000205946	USP17L6P	DUB4|USP17L6|vDUB4	"ubiquitin specific peptidase 17-like family member 6, pseudogene"	pseudo
chr15.93372468.-	chr15	93372468	93372469	-	0	NA	Intergenic	AluSg|SINE|Alu	-33754	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr1.9734604.+	chr1	9734604	9734605	+	0	NA	"intron (NM_005026, intron 1 of 23)"	AluSx1|SINE|Alu	-19960	NR_027045	644997	Hs.568595	NM_001045478	ENSG00000179840	C1orf200	-	chromosome 1 open reading frame 200	miscRNA
chr10.46833307.-	chr10	46833307	46833308	-	0	NA	Intergenic	AluY|SINE|Alu	64334	NR_027632	414241	Hs.594331	NR_027632	ENSG00000165874	FAM35BP	FAM35B|bA38L15.1	"family with sequence similarity 35, member A pseudogene"	pseudo
chr7.3124640.+	chr7	3124640	3124641	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41131	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chrX.142322510.-	chrX	142322510	142322511	-	0	NA	Intergenic	AluY|SINE|Alu	-208806	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	"SPANX family, member N4"	protein-coding
chr7.77704901.+	chr7	77704901	77704902	+	0	NA	"intron (NM_012301, intron 21 of 21)"	AluY|SINE|Alu	235454	NM_020432	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr6.33500251.-	chr6	33500251	33500252	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47819	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr2.242480204.-	chr2	242480204	242480205	-	0	NA	Intergenic	Intergenic	17942	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr6.138984645.+	chr6	138984645	138984646	+	0	NA	Intergenic	AluSp|SINE|Alu	-28160	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr8.26241071.-	chr8	26241071	26241072	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-548	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr19.14156309.-	chr19	14156309	14156310	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13662	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr21.46913917.+	chr21	46913917	46913918	+	0	NA	"intron (NM_030582, intron 25 of 41)"	"intron (NM_030582, intron 25 of 41)"	38493	NM_030582	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr21.46232649.-	chr21	46232649	46232650	-	0	NA	"intron (NM_006936, intron 2 of 3)"	HAL1|LINE|L1	-5395	NM_006936	6612	Hs.474005	NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae)	protein-coding
chr21.43699111.+	chr21	43699111	43699112	+	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	36595	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr2.198058508.-	chr2	198058508	198058509	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117013	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr1.183257538.+	chr1	183257538	183257539	+	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	16471	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr7.2916579.-	chr7	2916579	2916580	-	0	NA	Intergenic	Intergenic	32620	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr15.100080067.-	chr15	100080067	100080068	-	0	NA	Intergenic	AluSq2|SINE|Alu	26066	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr19.18180398.+	chr19	18180398	18180399	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17299	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr9.138690168.-	chr9	138690168	138690169	-	0	NA	Intergenic	Intergenic	-96137	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr2.61404498.-	chr2	61404498	61404499	-	0	NA	promoter-TSS (NM_152392)	promoter-TSS (NM_152392)	57	NM_152392	130872	Hs.732993	NM_152392	ENSG00000173209	AHSA2	Hch1	"AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)"	protein-coding
chr2.97431132.-	chr2	97431132	97431133	-	0	NA	"intron (NM_020184, intron 1 of 6)"	AluSp|SINE|Alu	-4493	NM_020184	26504	Hs.175043	NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin M4	protein-coding
chr4.6202409.+	chr4	6202409	6202410	+	0	NA	promoter-TSS (NM_144720)	promoter-TSS (NM_144720)	-51	NR_037863	285484	Hs.479068	NR_037863		LOC285484	-	uncharacterized LOC285484	miscRNA
chr2.101418661.+	chr2	101418661	101418662	+	0	NA	Intergenic	Intergenic	-17952	NM_002518	4862	Hs.705895	NM_002518	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
chr14.29185211.-	chr14	29185211	29185212	-	0	NA	Intergenic	AluY|SINE|Alu	51067	NM_005249	2290	Hs.741222	NM_005249	ENSG00000176165	FOXG1	BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN	forkhead box G1	protein-coding
chr8.609238.-	chr8	609238	609239	-	0	NA	Intergenic	Intergenic	-71988	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr3.196729064.-	chr3	196729064	196729065	-	0	NA	promoter-TSS (NR_038285)	promoter-TSS (NR_038285)	713	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MFI2-AS1	-	MFI2 antisense RNA 1	miscRNA
chr1.171662938.+	chr1	171662938	171662939	+	0	NA	Intergenic	SVA_C|Other|Other	-41165	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr14.21740970.-	chr14	21740970	21740971	-	0	NA	Intergenic	AluSq2|SINE|Alu	3332	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr6.108315385.+	chr6	108315385	108315386	+	0	NA	Intergenic	AluSz|SINE|Alu	-35903	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr8.107670095.+	chr8	107670095	107670096	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	59	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr13.110551490.-	chr13	110551490	110551491	-	0	NA	Intergenic	AluSx|SINE|Alu	112576	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr4.3311539.+	chr4	3311539	3311540	+	0	NA	Intergenic	Intergenic	-4335	NM_198229	6002	Hs.527061	NM_002926	ENSG00000159788	RGS12	-	regulator of G-protein signaling 12	protein-coding
chr12.31575318.+	chr12	31575318	31575319	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96159	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr13.114899240.+	chr13	114899240	114899241	+	0	NA	Intergenic	Intergenic	-1145	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr8.107670063.-	chr8	107670063	107670064	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-27	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr5.91967069.+	chr5	91967069	91967070	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939430	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr1.36675729.-	chr1	36675729	36675730	-	0	NA	Intergenic	AluSc8|SINE|Alu	14288	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
chr3.17496091.+	chr3	17496091	17496092	+	0	NA	"intron (NM_014744, intron 3 of 21)"	AluY|SINE|Alu	245421	NM_001134381	9779	Hs.475629	NM_001134380	ENSG00000131374	TBC1D5	-	"TBC1 domain family, member 5"	protein-coding
chr7.532138.+	chr7	532138	532139	+	0	NA	Intergenic	Intergenic	27343	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr3.47744714.-	chr3	47744714	47744715	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78691	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr14.23438209.-	chr14	23438209	23438210	-	0	NA	Intergenic	AluSx1|SINE|Alu	-8223	NM_198086	84962	Hs.655832	NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
chr6.53042931.-	chr6	53042931	53042932	-	0	NA	Intergenic	AluY|SINE|Alu	29307	NM_003643	8521	Hs.28346	NM_003643	ENSG00000137270	GCM1	GCMA|hGCMa	glial cells missing homolog 1 (Drosophila)	protein-coding
chr7.5322961.+	chr7	5322961	5322962	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	400	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr14.80915389.-	chr14	80915389	80915390	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	217992	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr3.132054944.-	chr3	132054944	132054945	-	0	NA	"intron (NM_001134194, intron 4 of 10)"	AluY|SINE|Alu	-18733	NM_001134194	55	Hs.433060	NM_001099	ENSG00000014257	ACPP	5'-NT|ACP-3|ACP3|PAP	"acid phosphatase, prostate"	protein-coding
chr5.693685.+	chr5	693685	693686	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-175	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr11.6429146.+	chr11	6429146	6429147	+	0	NA	"intron (NM_001257324, intron 1 of 7)"	AluYb8|SINE|Alu	-2255	NM_001257320	322	Hs.372840	NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	protein-coding
chr1.21759009.+	chr1	21759009	21759010	+	0	NA	Intergenic	AluSx|SINE|Alu	-7574	NR_046176	84224	Hs.325422	NM_001256416	ENSG00000142794	NBPF3	AE2	"neuroblastoma breakpoint family, member 3"	protein-coding
chr3.14349502.-	chr3	14349502	14349503	-	0	NA	Intergenic	Intergenic	94604	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr9.92014643.-	chr9	92014643	92014644	-	0	NA	"intron (NM_001142287, intron 6 of 20)"	AluSx1|SINE|Alu	-79968	NM_006378	10507	Hs.494406	NM_182635	ENSG00000187764	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D"	protein-coding
chr10.123791054.+	chr10	123791054	123791055	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42365	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chrX.91037178.+	chrX	91037178	91037179	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2918	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr15.63892630.-	chr15	63892630	63892631	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-396	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr16.4835245.+	chr16	4835245	4835246	+	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	-3153	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr9.86597307.+	chr9	86597307	86597308	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1670	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr17.65335410.-	chr17	65335410	65335411	-	0	NA	Intergenic	AluSx|SINE|Alu	-27311	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr15.44832049.-	chr15	44832049	44832050	-	0	NA	"intron (NM_003758, intron 2 of 7)"	AluJb|SINE|Alu	-2783	NM_003758	8669	Hs.404056	NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	"eukaryotic translation initiation factor 3, subunit J"	protein-coding
chrM.139.+	chrM	139	140	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.10424821.+	chr2	10424821	10424822	+	0	NA	Intergenic	Intergenic	-18209	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr21.45243641.+	chr21	45243641	45243642	+	0	NA	Intergenic	Intergenic	-11193	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr7.156795090.-	chr7	156795090	156795091	-	0	NA	Intergenic	Intergenic	-7039	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr6.123144115.-	chr6	123144115	123144116	-	0	NA	Intergenic	AluY|SINE|Alu	-34144	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr3.194483964.-	chr3	194483964	194483965	-	0	NA	"intron (NR_037891, intron 3 of 3)"	AluSx|SINE|Alu	-54814	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	miscRNA
chr2.10198520.+	chr2	10198520	10198521	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14148	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr19.3644503.+	chr19	3644503	3644504	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17690	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr11.33110449.+	chr11	33110449	33110450	+	0	NA	"intron (NM_001326, intron 17 of 20)"	AluJb|SINE|Alu	12753	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr11.342896.-	chr11	342896	342897	-	0	NA	Intergenic	AluSz|SINE|Alu	21982	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr19.8129735.-	chr19	8129735	8129736	-	0	NA	TTS (NM_032447)	TTS (NM_032447)	-12089	NM_005624	6370	Hs.310511	NM_001201359	ENSG00000131142	CCL25	Ckb15|SCYA25|TECK	chemokine (C-C motif) ligand 25	protein-coding
chr9.6807781.-	chr9	6807781	6807782	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50140	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr6.45365125.+	chr6	45365125	45365126	+	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	-19337	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr7.5334589.-	chr7	5334589	5334590	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12028	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr19.58963029.-	chr19	58963029	58963030	-	0	NA	promoter-TSS (NM_207395)	promoter-TSS (NM_207395)	-58	NM_207395	388569	Hs.186970	NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
chr19.2432757.+	chr19	2432757	2432758	+	0	NA	"intron (NM_032737, intron 8 of 11)"	"intron (NM_032737, intron 8 of 11)"	-4882	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr9.100092099.+	chr9	100092099	100092100	+	0	NA	"intron (NR_036529, intron 27 of 44)"	AluY|SINE|Alu	22189	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
chr10.32358170.-	chr10	32358170	32358171	-	0	NA	Intergenic	AluSg7|SINE|Alu	12799	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr4.989206.-	chr4	989206	989207	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1982	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr22.46326794.-	chr22	46326794	46326795	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46214	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr15.83365825.+	chr15	83365825	83365826	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12810	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr14.105242399.+	chr14	105242399	105242400	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17539	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr22.34378911.-	chr22	34378911	34378912	-	0	NA	Intergenic	AluSx1|SINE|Alu	62495	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr19.2424670.-	chr19	2424670	2424671	-	0	NA	TTS (NM_012458)	TTS (NM_012458)	-3205	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr14.77736360.-	chr14	77736360	77736361	-	0	NA	"intron (NM_021257, intron 1 of 3)"	"intron (NM_021257, intron 1 of 3)"	-1295	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr21.11107120.+	chr21	11107120	11107121	+	0	NA	Intergenic	CpG	-8183	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr13.111268285.-	chr13	111268285	111268286	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-354	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr3.172180215.+	chr3	172180215	172180216	+	0	NA	Intergenic	AluY|SINE|Alu	-13969	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr10.120946167.-	chr10	120946167	120946168	-	0	NA	Intergenic	AluY|SINE|Alu	7822	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr3.13876354.-	chr3	13876354	13876355	-	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	-45264	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr4.17513822.+	chr4	17513822	17513823	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	35	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr10.64708103.-	chr10	64708103	64708104	-	0	NA	Intergenic	SVA_E|Other|Other	129176	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr3.82554733.-	chr3	82554733	82554734	-	0	NA	Intergenic	MER52A|LTR|ERV1	743783	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr1.110881132.-	chr1	110881132	110881133	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-661	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr9.140167438.+	chr9	140167438	140167439	+	0	NA	"3' UTR (NM_015456, exon 13 of 13)"	"3' UTR (NM_015456, exon 13 of 13)"	-4842	NM_017723	54863	Hs.495541	NM_017723	ENSG00000198113	TOR4A	C9orf167	"torsin family 4, member A"	protein-coding
chr2.61701802.+	chr2	61701802	61701803	+	0	NA	Intergenic	AluSg|SINE|Alu	-3953	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr5.1466241.-	chr5	1466241	1466242	-	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	20698	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr3.29051422.+	chr3	29051422	29051423	+	0	NA	Intergenic	AluSc8|SINE|Alu	-271381	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr21.47403577.-	chr21	47403577	47403578	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1914	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr3.46709799.+	chr3	46709799	46709800	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9100	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr22.39040973.+	chr22	39040973	39040974	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11661	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr7.55379442.+	chr7	55379442	55379443	+	0	NA	Intergenic	SVA_D|Other|Other	-53699	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr9.6858739.+	chr9	6858739	6858740	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101098	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr3.15431343.-	chr3	15431343	15431344	-	0	NA	Intergenic	AluSp|SINE|Alu	-37699	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr4.185174136.+	chr4	185174136	185174137	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35022	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr7.5610952.-	chr7	5610952	5610953	-	0	NA	Intergenic	AluSx1|SINE|Alu	21484	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr17.4810687.+	chr17	4810687	4810688	+	0	NA	Intergenic	AluY|SINE|Alu	-4318	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	"cholinergic receptor, nicotinic, epsilon (muscle)"	protein-coding
chr15.76627337.-	chr15	76627337	76627338	-	0	NA	Intergenic	AluSg|SINE|Alu	1810	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr1.246165817.+	chr1	246165817	246165818	+	0	NA	"intron (NM_001167740, intron 5 of 11)"	AluY|SINE|Alu	414897	NM_022743	64754	Hs.567571	NM_001167740	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
chr12.64883646.+	chr12	64883646	64883647	+	0	NA	"intron (NM_013254, intron 12 of 20)"	AluSc8|SINE|Alu	37806	NM_013254	29110	Hs.505874	NM_013254	ENSG00000183735	TBK1	NAK|T2K	TANK-binding kinase 1	protein-coding
chr5.140530225.-	chr5	140530225	140530226	-	0	NA	"exon (NM_018939, exon 1 of 1)"	"exon (NM_018939, exon 1 of 1)"	-386	NM_018939	56130	Hs.283085	NM_018939	ENSG00000113211	PCDHB6	PCDH-BETA6	protocadherin beta 6	protein-coding
chr4.55034931.+	chr4	55034931	55034932	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60333	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr9.131128796.-	chr9	131128796	131128797	-	0	NA	Intergenic	AluY|SINE|Alu	4802	NM_030914	81605	Hs.495229	NM_001135947		URM1	C9orf74	ubiquitin related modifier 1	protein-coding
chr21.44872340.-	chr21	44872340	44872341	-	0	NA	"non-coding (NR_026960, exon 2 of 3)"	"non-coding (NR_026960, exon 2 of 3)"	-2436	NR_026960	284836	Hs.146127	NR_026960	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	miscRNA
chr2.232479079.+	chr2	232479079	232479080	+	0	NA	Intergenic	CpG	21504	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	C2orf57	-	chromosome 2 open reading frame 57	protein-coding
chr2.202898662.-	chr2	202898662	202898663	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	648	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr17.29255166.-	chr17	29255166	29255167	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6412	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr7.5396288.+	chr7	5396288	5396289	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66889	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr6.8388548.+	chr6	8388548	8388549	+	0	NA	Intergenic	LTR9|LTR|ERV1	47246	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr10.65193047.+	chr10	65193047	65193048	+	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSp|SINE|Alu	-31942	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr6.24720955.-	chr6	24720955	24720956	-	0	NA	Intergenic	CpG	1552	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr5.57859593.+	chr5	57859593	57859594	+	0	NA	Intergenic	SVA_A|Other|Other	-19346	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr3.98624744.-	chr3	98624744	98624745	-	0	NA	Intergenic	AluY|SINE|Alu	4211	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr19.11043345.+	chr19	11043345	11043346	+	0	NA	Intergenic	AluSg4|SINE|Alu	3921	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr1.2498984.+	chr1	2498984	2498985	+	0	NA	Intergenic	Intergenic	-10534	NR_037844	100133445	Hs.602652	NR_037844		LOC100133445	-	uncharacterized LOC100133445	miscRNA
chr18.77244862.-	chr18	77244862	77244863	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84536	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr11.92637339.+	chr11	92637339	92637340	+	0	NA	Intergenic	AluY|SINE|Alu	-65450	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr8.38894821.+	chr8	38894821	38894822	+	0	NA	"intron (NR_027638, intron 11 of 20)"	AluYc3|SINE|Alu	40316	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
chr3.133292596.-	chr3	133292596	133292597	-	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	-162	NM_017548	55573	Hs.518265	NM_001134422	ENSG00000091527	CDV3	H41	CDV3 homolog (mouse)	protein-coding
chrX.53111590.+	chrX	53111590	53111591	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	48	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.9832290.+	chr1	9832290	9832291	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52260	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr3.183052338.-	chr3	183052338	183052339	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81306	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr5.17207822.+	chr5	17207822	17207823	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9110	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr9.96915841.+	chr9	96915841	96915842	+	0	NA	Intergenic	AluSx3|SINE|Alu	-22398	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	miscRNA
chrX.7012507.-	chrX	7012507	7012508	-	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	53394	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr18.72923596.-	chr18	72923596	72923597	-	0	NA	"intron (NM_005786, intron 1 of 1)"	CpG	-886	NM_005786	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
chr5.112257273.-	chr5	112257273	112257274	-	0	NA	"intron (NM_005669, intron 1 of 4)"	CpG	-758	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr17.40484855.-	chr17	40484855	40484856	-	0	NA	"intron (NM_003150, intron 10 of 23)"	AluSx|SINE|Alu	-45290	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr5.74565576.-	chr5	74565576	74565577	-	0	NA	Intergenic	SVA_D|Other|Other	32873	NM_001164443	256006	Hs.482533	NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
chr19.7123247.-	chr19	7123247	7123248	-	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	-53776	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr8.3500978.-	chr8	3500978	3500979	-	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	-1351350	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr8.123636939.-	chr8	123636939	123636940	-	0	NA	Intergenic	AluSx|SINE|Alu	156962	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr6.64944900.-	chr6	64944900	64944901	-	0	NA	"intron (NM_001142800, intron 30 of 42)"	AluSx1|SINE|Alu	-588469	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
chr1.151199220.+	chr1	151199220	151199221	+	0	NA	"intron (NM_001135638, intron 3 of 15)"	"intron (NM_001135638, intron 3 of 15)"	-27977	NM_002810	5710	Hs.505059	NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 4"	protein-coding
chr12.50448263.-	chr12	50448263	50448264	-	0	NA	Intergenic	AluSx|SINE|Alu	3157	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr11.1122312.-	chr11	1122312	1122313	-	0	NA	Intergenic	Intergenic	-47437	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr17.7561690.-	chr17	7561690	7561691	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7436	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr1.217314049.+	chr1	217314049	217314050	+	0	NA	Intergenic	Intergenic	-2952	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr5.140365511.+	chr5	140365511	140365512	+	0	NA	"intron (NM_031849, intron 3 of 3)"	AluY|SINE|Alu	19159	NM_031883	56134	Hs.199343	NM_018899	ENSG00000243232	PCDHAC2	PCDH-ALPHA-C2	"protocadherin alpha subfamily C, 2"	protein-coding
chrX.153657089.-	chrX	153657089	153657090	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-111	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr3.20070756.-	chr3	20070756	20070757	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10768	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr2.210525404.-	chr2	210525404	210525405	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-81001	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr14.34667845.+	chr14	34667845	34667846	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247561	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr7.101460880.-	chr7	101460880	101460881	-	0	NA	promoter-TSS (NM_181552)	promoter-TSS (NM_181552)	2	NM_181552	1523	Hs.191482	NM_001202543	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
chrX.112142825.-	chrX	112142825	112142826	-	0	NA	Intergenic	AluY|SINE|Alu	58782	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr17.28018801.-	chr17	28018801	28018802	-	0	NA	"intron (NM_033389, intron 4 of 14)"	AluY|SINE|Alu	70360	NM_032854	84940	Hs.143046	NM_032854	ENSG00000167549	CORO6	-	coronin 6	protein-coding
chr6.168397424.-	chr6	168397424	168397425	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	19805	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr1.109995583.-	chr1	109995583	109995584	-	0	NA	Intergenic	AluY|SINE|Alu	13517	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr12.96314746.+	chr12	96314746	96314747	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21682	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr2.228591051.+	chr2	228591051	228591052	+	0	NA	Intergenic	AluSx|SINE|Alu	-8306	NM_025243	80704	Hs.221597	NM_025243	ENSG00000135917	SLC19A3	BBGD|THMD2|THTR2	"solute carrier family 19, member 3"	protein-coding
chr8.7877745.-	chr8	7877745	7877746	-	0	NA	Intergenic	Intergenic	22702	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr19.6196965.+	chr19	6196965	6196966	+	0	NA	Intergenic	AluY|SINE|Alu	61255	NM_030924	81616	Hs.465720	NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
chr7.5396276.+	chr7	5396276	5396277	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66901	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr12.43781874.+	chr12	43781874	43781875	+	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	163850	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr12.105389733.-	chr12	105389733	105389734	-	0	NA	Intergenic	AluY|SINE|Alu	-9635	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr7.1542285.-	chr7	1542285	1542286	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1733	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr1.60870819.-	chr1	60870819	60870820	-	0	NA	Intergenic	AluYa5|SINE|Alu	331377	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chr10.28821805.-	chr10	28821805	28821806	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-383	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr2.106682224.-	chr2	106682224	106682225	-	0	NA	"exon (NM_032411, exon 1 of 4)"	"exon (NM_032411, exon 1 of 4)"	-111	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chrX.40019657.+	chrX	40019657	40019658	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluY|SINE|Alu	16925	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr9.138397732.+	chr9	138397732	138397733	+	0	NA	Intergenic	Intergenic	5255	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr11.3224527.+	chr11	3224527	3224528	+	0	NA	Intergenic	CpG	-15035	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr10.135104769.+	chr10	135104769	135104770	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14362	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr2.237068212.+	chr2	237068212	237068213	+	0	NA	Intergenic	CpG	8440	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.193059453.+	chr2	193059453	193059454	+	0	NA	"5' UTR (NM_016192, exon 1 of 10)"	"5' UTR (NM_016192, exon 1 of 10)"	191	NM_016192	23671	Hs.144513	NM_016192		TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding
chr5.179373606.-	chr5	179373606	179373607	-	0	NA	Intergenic	AluY|SINE|Alu	38750	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr2.1554776.+	chr2	1554776	1554777	+	0	NA	Intergenic	Intergenic	136596	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr7.5396374.+	chr7	5396374	5396375	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66803	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr19.23474375.+	chr19	23474375	23474376	+	0	NA	Intergenic	AluSx|SINE|Alu	-41203	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr2.58077700.+	chr2	58077700	58077701	+	0	NA	Intergenic	Intergenic	-196077	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr3.64030672.+	chr3	64030672	64030673	+	0	NA	Intergenic	AluYc3|SINE|Alu	-20986	NM_001271780	9861	Hs.152536	NM_001271779	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 6"	protein-coding
chr1.238519093.-	chr1	238519093	238519094	-	0	NA	Intergenic	AluSg|SINE|Alu	-130224	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LOC339535	-	uncharacterized LOC339535	miscRNA
chr21.34914905.-	chr21	34914905	34914906	-	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	-290	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr17.47735139.+	chr17	47735139	47735140	+	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	20386	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr19.22949506.+	chr19	22949506	22949507	+	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	17467	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr16.86544675.+	chr16	86544675	86544676	+	0	NA	"exon (NM_001451, exon 1 of 2)"	"exon (NM_001451, exon 1 of 2)"	542	NM_001451	2294	Hs.155591	NM_001451	ENSG00000103241	FOXF1	ACDMPV|FKHL5|FREAC1	forkhead box F1	protein-coding
chr14.95929349.+	chr14	95929349	95929350	+	0	NA	"intron (NM_152592, intron 3 of 16)"	AluSp|SINE|Alu	12824	NM_152592	161176	Hs.354645	NM_152592	ENSG00000176438	SYNE3	C14orf49|NET53|Nesp3	"spectrin repeat containing, nuclear envelope family member 3"	protein-coding
chr17.7198729.+	chr17	7198729	7198730	+	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	-853	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr17.12456653.-	chr17	12456653	12456654	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3368	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr10.69822251.-	chr10	69822251	69822252	-	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	-12852	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr3.53225244.+	chr3	53225244	53225245	+	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	30021	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr7.155246291.-	chr7	155246291	155246292	-	0	NA	Intergenic	Intergenic	4533	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr5.78890160.-	chr5	78890160	78890161	-	0	NA	Intergenic	AluY|SINE|Alu	18083	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr1.16388726.+	chr1	16388726	16388727	+	0	NA	"intron (NM_182623, intron 3 of 6)"	"intron (NM_182623, intron 3 of 6)"	11401	NM_182623	348487	Hs.126825	NM_182623	ENSG00000185519	FAM131C	C1orf117|RP11-5P18.9	"family with sequence similarity 131, member C"	protein-coding
chr17.79427782.-	chr17	79427782	79427783	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9568	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr11.1122311.+	chr11	1122311	1122312	+	0	NA	Intergenic	Intergenic	47436	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr1.167691401.-	chr1	167691401	167691402	-	0	NA	"exon (NM_024569, exon 1 of 5)"	"exon (NM_024569, exon 1 of 5)"	-214	NM_001146191	9019	Hs.493919	NM_001146191	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
chr3.149374883.-	chr3	149374883	149374884	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-929	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr5.170687198.-	chr5	170687198	170687199	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49090	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr10.42385200.-	chr10	42385200	42385201	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-478293	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr7.130728506.+	chr7	130728506	130728507	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63283	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr2.218944866.-	chr2	218944866	218944867	-	0	NA	"intron (NR_034176, intron 11 of 13)"	"intron (NR_034176, intron 11 of 13)"	-11128	NM_198483	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
chr1.107439592.+	chr1	107439592	107439593	+	0	NA	Intergenic	AluY|SINE|Alu	-159675	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
chr5.76691194.+	chr5	76691194	76691195	+	0	NA	"intron (NM_001029853, intron 9 of 20)"	AluY|SINE|Alu	97138	NM_018268	55255	Hs.482573	NM_018268		WDR41	-	WD repeat domain 41	protein-coding
chr12.38493562.+	chr12	38493562	38493563	+	0	NA	Intergenic	Intergenic	-216995	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr19.34248217.-	chr19	34248217	34248218	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39534	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr1.10727899.+	chr1	10727899	10727900	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128834	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr1.16972993.+	chr1	16972993	16972994	+	0	NA	"non-coding (NR_027504, exon 2 of 14)"	"non-coding (NR_027504, exon 2 of 14)"	924	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr5.74566603.+	chr5	74566603	74566604	+	0	NA	Intergenic	SVA_F|Other|Other	-33900	NM_001164443	256006	Hs.482533	NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
chr1.28193220.-	chr1	28193220	28193221	-	0	NA	Intergenic	AluY|SINE|Alu	5835	NM_004848	9473	Hs.10649	NM_001039477	ENSG00000130775	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
chr12.49479734.-	chr12	49479734	49479735	-	0	NA	Intergenic	AluSq|SINE|Alu	-8868	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chr6.165205844.+	chr6	165205844	165205845	+	0	NA	Intergenic	AluYb8|SINE|Alu	517267	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr5.79863378.-	chr5	79863378	79863379	-	0	NA	"intron (NM_001004441, intron 2 of 4)"	AluSq|SINE|Alu	-2926	NM_001004441	340120	Hs.519404	NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
chr11.62418875.+	chr11	62418875	62418876	+	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	1899	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr2.39267416.-	chr2	39267416	39267417	-	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	79931	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr7.99667503.-	chr7	99667503	99667504	-	0	NA	TTS (NM_032924)	TTS (NM_032924)	-11868	NM_017715	7551	Hs.435302	NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
chr1.110881045.+	chr1	110881045	110881046	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	748	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr2.5413365.-	chr2	5413365	5413366	-	0	NA	Intergenic	AluSc|SINE|Alu	419434	NM_003108	6664	Hs.432638	NM_003108	ENSG00000176887	SOX11	-	SRY (sex determining region Y)-box 11	protein-coding
chr6.161529485.+	chr6	161529485	161529486	+	0	NA	"intron (NM_005922, intron 21 of 26)"	"intron (NM_005922, intron 21 of 26)"	53529	NR_024277	79992	Hs.664873	NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1 (non-protein coding)	miscRNA
chr7.13141794.+	chr7	13141794	13141795	+	0	NA	Intergenic	SVA_D|Other|Other	414883	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr6.65337801.+	chr6	65337801	65337802	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673510	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr3.188566636.+	chr3	188566636	188566637	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323127	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr6.163113540.-	chr6	163113540	163113541	-	0	NA	"intron (NM_004562, intron 1 of 11)"	MER77|LTR|ERVL	34624	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr19.4455345.+	chr19	4455345	4455346	+	0	NA	promoter-TSS (NM_001171091)	promoter-TSS (NM_001171091)	-50	NM_001171091	80700	Hs.435255	NM_001171091	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
chr12.9892353.+	chr12	9892353	9892354	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6458	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr19.8394129.-	chr19	8394129	8394130	-	0	NA	"intron (NM_198471, intron 7 of 10)"	AluSx|SINE|Alu	-7745	NM_001031	6234	Hs.740394	NM_001031		RPS28	S28	ribosomal protein S28	protein-coding
chr10.73970551.-	chr10	73970551	73970552	-	0	NA	"exon (NM_001198800, exon 3 of 10)"	"exon (NM_001198800, exon 3 of 10)"	5207	NR_038392	119504	Hs.426296	NM_001242546		ANAPC16	APC16|C10orf104|CENP-27|MSAG|bA570G20.3	anaphase promoting complex subunit 16	protein-coding
chr5.117912699.+	chr5	117912699	117912700	+	0	NA	Intergenic	AluY|SINE|Alu	-397582	NR_036262	100422885		NR_036262		MIR1244-2	-	microRNA 1244-2	miscRNA
chrX.153922817.-	chrX	153922817	153922818	-	0	NA	"intron (NM_001081573, intron 8 of 9)"	AluY|SINE|Alu	40964	NM_020994	30848	Hs.87225	NM_020994	ENSG00000126890	CTAG2	CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B	cancer/testis antigen 2	protein-coding
chrX.39680371.-	chrX	39680371	39680372	-	0	NA	Intergenic	CpG	-276348	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr18.77627529.-	chr18	77627529	77627530	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3861	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr2.210525369.-	chr2	210525369	210525370	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80966	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr1.28193212.-	chr1	28193212	28193213	-	0	NA	Intergenic	AluY|SINE|Alu	5843	NM_004848	9473	Hs.10649	NM_001039477	ENSG00000130775	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
chr9.86755504.+	chr9	86755504	86755505	+	0	NA	Intergenic	CpG	159867	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr22.38166037.+	chr22	38166037	38166038	+	0	NA	"intron (NM_001039141, intron 21 of 23)"	"intron (NM_001039141, intron 21 of 23)"	23796	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr20.62508340.-	chr20	62508340	62508341	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	-11759	NM_001243892	7165	Hs.473296	NM_001243891	ENSG00000101150	TPD52L2	D54	tumor protein D52-like 2	protein-coding
chr17.21825582.+	chr17	21825582	21825583	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	212	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr11.17905673.-	chr11	17905673	17905674	-	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	-128964	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr19.58125548.+	chr19	58125548	58125549	+	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	-282	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr17.3806721.+	chr17	3806721	3806722	+	0	NA	"intron (NM_002558, intron 6 of 11)"	"intron (NM_002558, intron 6 of 11)"	-10384	NM_032294	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr1.43460352.+	chr1	43460352	43460353	+	0	NA	Intergenic	AluSp|SINE|Alu	-35505	NM_006516	6513	Hs.473721	NM_006516		SLC2A1	DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED	"solute carrier family 2 (facilitated glucose transporter), member 1"	protein-coding
chr2.128432617.-	chr2	128432617	128432618	-	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	-147	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr22.24237315.-	chr22	24237315	24237316	-	0	NA	TTS (NM_002415)	TTS (NM_002415)	-750	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr17.72755637.-	chr17	72755637	72755638	-	0	NA	"intron (NM_004252, intron 1 of 5)"	"intron (NM_004252, intron 1 of 5)"	-10885	NR_037409	100500847		NR_037409	ENSG00000264624	MIR3615	-	microRNA 3615	miscRNA
chr20.45991145.+	chr20	45991145	45991146	+	0	NA	Intergenic	AluSz|SINE|Alu	-5671	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr4.63598242.-	chr4	63598242	63598243	-	0	NA	Intergenic	L1HS|LINE|L1	-1235403	NM_015236	23284	Hs.570770	NM_015236	ENSG00000150471	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
chr13.84453879.+	chr13	84453879	84453880	+	0	NA	"exon (NM_052910, exon 1 of 1)"	"exon (NM_052910, exon 1 of 1)"	2649	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr16.656953.-	chr16	656953	656954	-	0	NA	"intron (NM_001172663, intron 2 of 6)"	"intron (NM_001172663, intron 2 of 6)"	-16780	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr20.33062705.-	chr20	33062705	33062706	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8575	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr6.33500250.-	chr6	33500250	33500251	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47820	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr2.131551997.-	chr2	131551997	131551998	-	0	NA	Intergenic	AluY|SINE|Alu	-38133	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr1.38342296.-	chr1	38342296	38342297	-	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	17004	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr2.61306967.+	chr2	61306967	61306968	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13604	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr2.110372732.+	chr2	110372732	110372733	+	0	NA	promoter-TSS (NM_178584)	promoter-TSS (NM_178584)	821	NM_023016	65124	Hs.355455	NM_023016	ENSG00000198142	SOWAHC	ANKRD57|C2orf26	sosondowah ankyrin repeat domain family member C	protein-coding
chr21.44838345.+	chr21	44838345	44838346	+	0	NA	"exon (NM_173354, exon 12 of 14)"	"exon (NM_173354, exon 12 of 14)"	8657	NM_173354	150094	Hs.700423	NM_173354	ENSG00000142178	SIK1	MSK|SIK|SNF1LK	salt-inducible kinase 1	protein-coding
chr1.27394461.+	chr1	27394461	27394462	+	0	NA	Intergenic	AluY|SINE|Alu	-55128	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr18.77627544.-	chr18	77627544	77627545	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3876	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr2.25758487.-	chr2	25758487	25758488	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114604	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr17.46186998.+	chr17	46186998	46186999	+	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	2051	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr17.79611152.-	chr17	79611152	79611153	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1803	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr2.106682158.-	chr2	106682158	106682159	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-45	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr1.15927958.-	chr1	15927958	15927959	-	0	NA	Intergenic	AluSg4|SINE|Alu	15995	NM_032341	84301	Hs.718857	NM_032341		DDI2	RP4-680D5.5	DNA-damage inducible 1 homolog 2 (S. cerevisiae)	protein-coding
chr4.8913696.+	chr4	8913696	8913697	+	0	NA	Intergenic	Intergenic	-37781	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr1.16973971.-	chr1	16973971	16973972	-	0	NA	"non-coding (NR_027504, exon 6 of 14)"	"non-coding (NR_027504, exon 6 of 14)"	-1902	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr16.34375288.+	chr16	34375288	34375289	+	0	NA	Intergenic	SST1|Satellite|centr	29474	NR_002837	606551	Hs.646441	NR_002837		UBE2MP1	-	ubiquitin-conjugating enzyme E2M pseudogene 1	pseudo
chr19.10846347.+	chr19	10846347	10846348	+	0	NA	"intron (NM_001005360, intron 1 of 20)"	AluSx1|SINE|Alu	17267	NR_030368	693223		NR_030368		MIR638	MIRN638|hsa-mir-638	microRNA 638	miscRNA
chr7.31092135.+	chr7	31092135	31092136	+	0	NA	promoter-TSS (NM_001199637)	promoter-TSS (NM_001199637)	59	NM_001199636	117	Hs.377783	NM_001118	ENSG00000078549	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	adenylate cyclase activating polypeptide 1 (pituitary) receptor type I	protein-coding
chr2.45395942.+	chr2	45395942	45395943	+	0	NA	Intergenic	CpG	86138	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	UNQ6975	-	putative uncharacterized protein UNQ6975/PRO21958	miscRNA
chr10.133869241.-	chr10	133869241	133869242	-	0	NA	Intergenic	Intergenic	49072	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr5.75799121.+	chr5	75799121	75799122	+	0	NA	"intron (NM_006633, intron 2 of 35)"	AluSq|SINE|Alu	99972	NM_006633	10788	Hs.291030	NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
chr10.73208001.-	chr10	73208001	73208002	-	0	NA	"intron (NM_022124, intron 3 of 67)"	"intron (NM_022124, intron 3 of 67)"	-51310	NM_001171932	64072	Hs.656032	NM_001171930	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
chr19.47364608.+	chr19	47364608	47364609	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10405	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr11.12841265.+	chr11	12841265	12841266	+	0	NA	"intron (NM_021961, intron 3 of 12)"	AluY|SINE|Alu	145296	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chr7.155246310.-	chr7	155246310	155246311	-	0	NA	Intergenic	Intergenic	4514	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chrX.89718082.-	chrX	89718082	89718083	-	0	NA	Intergenic	AluY|SINE|Alu	-541142	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	"TGFB-induced factor homeobox 2-like, X-linked"	protein-coding
chr4.1562736.+	chr4	1562736	1562737	+	0	NA	Intergenic	L2a|LINE|L2	122982	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr22.51001348.+	chr22	51001348	51001349	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-20	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr11.18743334.+	chr11	18743334	18743335	+	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	4443	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr17.3109964.-	chr17	3109964	3109965	-	0	NA	Intergenic	AluSc8|SINE|Alu	8951	NM_014565	8383	Hs.532688	NM_014565	ENSG00000172146	OR1A1	OR17-7	"olfactory receptor, family 1, subfamily A, member 1"	protein-coding
chr22.24237329.-	chr22	24237329	24237330	-	0	NA	TTS (NM_002415)	TTS (NM_002415)	-764	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr22.50876274.-	chr22	50876274	50876275	-	0	NA	"exon (NM_001242899, exon 16 of 23)"	"exon (NM_001242899, exon 16 of 23)"	-37190	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr2.213546680.-	chr2	213546680	213546681	-	0	NA	Intergenic	AluSc8|SINE|Alu	143328	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr5.91967021.-	chr5	91967021	91967022	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-939478	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr11.66224143.+	chr11	66224143	66224144	+	0	NA	Intergenic	AluY|SINE|Alu	-9655	NM_001243135	246330	Hs.656875	NM_001098510	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
chr16.56691674.+	chr16	56691674	56691675	+	0	NA	promoter-TSS (NM_005949)	promoter-TSS (NM_005949)	-181	NM_005949	4494	Hs.513626	NM_005949	ENSG00000198417	MT1F	MT1	metallothionein 1F	protein-coding
chr4.183981838.-	chr4	183981838	183981839	-	0	NA	Intergenic	AluJb|SINE|Alu	-23020	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	"family with sequence similarity 92, member A3"	pseudo
chr11.7603337.-	chr11	7603337	7603338	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15080	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chrX.48957466.+	chrX	48957466	48957467	+	0	NA	"5' UTR (NM_007075, exon 2 of 12)"	"5' UTR (NM_007075, exon 2 of 12)"	593	NM_007075	11152	Hs.632807	NM_001029896	ENSG00000196998	WDR45	NBIA4|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
chr22.17443284.+	chr22	17443284	17443285	+	0	NA	"3' UTR (NM_001037814, exon 10 of 10)"	"3' UTR (NM_001037814, exon 10 of 10)"	45828	NM_001037814	128954	Hs.434113	NM_001037814	ENSG00000215568	GAB4	-	"GRB2-associated binding protein family, member 4"	protein-coding
chr3.48117713.-	chr3	48117713	48117714	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-13056	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr19.2340035.-	chr19	2340035	2340036	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11406	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr7.66607907.+	chr7	66607907	66607908	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28523	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr8.11556184.-	chr8	11556184	11556185	-	0	NA	Intergenic	Intergenic	5533	NM_002052	2626	Hs.243987	NM_002052	ENSG00000136574	GATA4	ASD2|VSD1	GATA binding protein 4	protein-coding
chr1.227982951.+	chr1	227982951	227982952	+	0	NA	Intergenic	Intergenic	-20467	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chrX.42939825.+	chrX	42939825	42939826	+	0	NA	Intergenic	AluSq2|SINE|Alu	-302339	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr22.22259545.+	chr22	22259545	22259546	+	0	NA	Intergenic	Intergenic	-37575	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr2.43254208.+	chr2	43254208	43254209	+	0	NA	Intergenic	Intergenic	199537	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr6.33811452.+	chr6	33811452	33811453	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39659	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr1.108113222.+	chr1	108113222	108113223	+	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	117904	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr17.40601035.+	chr17	40601035	40601036	+	0	NA	Intergenic	SVA_D|Other|Other	-9827	NM_001130021	535	Hs.463074	NM_001130020	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	"ATPase, H+ transporting, lysosomal V0 subunit a1"	protein-coding
chr18.34823817.+	chr18	34823817	34823818	+	0	NA	"3' UTR (NM_001025087, exon 13 of 13)"	"3' UTR (NM_001025087, exon 13 of 13)"	322183	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr9.77401511.-	chr9	77401511	77401512	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100752	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr12.132116766.+	chr12	132116766	132116767	+	0	NA	Intergenic	L1ME1|LINE|L1	-78866	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr15.29622529.-	chr15	29622529	29622530	-	0	NA	"intron (NM_015307, intron 2 of 10)"	AluSc8|SINE|Alu	60509	NM_138704	56160	Hs.94011	NM_138704	ENSG00000185115	NDNL2	HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3	necdin-like 2	protein-coding
chr19.11043340.-	chr19	11043340	11043341	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3916	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr19.17823846.-	chr19	17823846	17823847	-	0	NA	Intergenic	AluY|SINE|Alu	6457	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chr17.12204596.-	chr17	12204596	12204597	-	0	NA	Intergenic	AluYc|SINE|Alu	-219380	NR_030613	100126313		NR_030613		MIR744	MIRN744|hsa-mir-744	microRNA 744	miscRNA
chr3.164119674.+	chr3	164119674	164119675	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676609	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr8.104645101.-	chr8	104645101	104645102	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132125	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr5.14460440.-	chr5	14460440	14460441	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121451	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr1.7739326.-	chr1	7739326	7739327	-	0	NA	"intron (NM_015215, intron 11 of 22)"	"intron (NM_015215, intron 11 of 22)"	92003	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr14.23845008.+	chr14	23845008	23845009	+	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	-1009	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr19.37769942.+	chr19	37769942	37769943	+	0	NA	Intergenic	SST1|Satellite|centr	-10030	NR_029390	284412	Hs.635932	NR_029390		LOC284412	-	uncharacterized LOC284412	miscRNA
chr14.102109476.-	chr14	102109476	102109477	-	0	NA	Intergenic	AluY|SINE|Alu	-81788	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr4.989199.-	chr4	989199	989200	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1975	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr11.110300710.-	chr11	110300710	110300711	-	0	NA	promoter-TSS (NM_004109)	promoter-TSS (NM_004109)	-49	NM_004109	2230	Hs.744	NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
chr2.44294777.+	chr2	44294777	44294778	+	0	NA	Intergenic	SVA_D|Other|Other	-71633	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr16.66969605.+	chr16	66969605	66969606	+	0	NA	"exon (NM_003869, exon 1 of 12)"	"exon (NM_003869, exon 1 of 12)"	1231	NR_036684	8824	Hs.282975	NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
chr8.71520544.+	chr8	71520544	71520545	+	0	NA	promoter-TSS (NR_038881)	promoter-TSS (NR_038881)	150	NM_014294	23471	Hs.491988	NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
chr12.121168037.+	chr12	121168037	121168038	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSg|SINE|Alu	4466	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr14.34667840.+	chr14	34667840	34667841	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247556	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr2.213802377.-	chr2	213802377	213802378	-	0	NA	Intergenic	AluY|SINE|Alu	11317	NR_039936	100616472		NR_039936		MIR4776-2	-	microRNA 4776-2	miscRNA
chrX.70362717.+	chrX	70362717	70362718	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-1964	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr11.134275987.-	chr11	134275987	134275988	-	0	NA	"intron (NM_054025, intron 1 of 5)"	MIR3|SINE|MIR	-5825	NM_054025	27087	Hs.381050	NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	"beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)"	protein-coding
chr11.62418866.+	chr11	62418866	62418867	+	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	1908	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr2.113965288.+	chr2	113965288	113965289	+	0	NA	Intergenic	AluY|SINE|Alu	-27816	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr11.68303159.+	chr11	68303159	68303160	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74973	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr22.47162101.+	chr22	47162101	47162102	+	0	NA	"intron (NM_014346, intron 1 of 12)"	AluY|SINE|Alu	3583	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr22.50871682.+	chr22	50871682	50871683	+	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	41782	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr2.42782451.+	chr2	42782451	42782452	+	0	NA	Intergenic	AluSp|SINE|Alu	-13220	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr18.34900345.-	chr18	34900345	34900346	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	"intron (NM_001025089, intron 3 of 11)"	-245655	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr12.51819074.-	chr12	51819074	51819075	-	0	NA	"5' UTR (NM_001258403, exon 1 of 17)"	"5' UTR (NM_001258403, exon 1 of 17)"	-173	NM_001258403	9498	Hs.4749	NM_001039960	ENSG00000050438	SLC4A8	NBC3|NDCBE	"solute carrier family 4, sodium bicarbonate cotransporter, member 8"	protein-coding
chr20.43378738.+	chr20	43378738	43378739	+	0	NA	"intron (NM_022358, intron 1 of 1)"	CpG	4250	NM_022358	60598	Hs.528664	NM_022358		KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	"potassium channel, subfamily K, member 15"	protein-coding
chr19.693380.-	chr19	693380	693381	-	0	NA	"intron (NM_214710, intron 2 of 4)"	"intron (NM_214710, intron 2 of 4)"	-2081	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chr7.56109502.+	chr7	56109502	56109503	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9766	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr12.132353191.+	chr12	132353191	132353192	+	0	NA	Intergenic	Intergenic	-26088	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr2.87642257.+	chr2	87642257	87642258	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-112717	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr3.121033042.-	chr3	121033042	121033043	-	0	NA	"intron (NM_014980, intron 20 of 27)"	SVA_E|Other|Other	-231811	NM_199420	10721	Hs.241517	NM_199420	ENSG00000051341	POLQ	POLH|PRO0327	"polymerase (DNA directed), theta"	protein-coding
chr9.131293120.+	chr9	131293120	131293121	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21717	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr7.138540926.-	chr7	138540926	138540927	-	0	NA	"intron (NM_001164665, intron 16 of 19)"	AluYk4|SINE|Alu	57985	NM_020632	50617	Hs.98967	NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	"ATPase, H+ transporting, lysosomal V0 subunit a4"	protein-coding
chr17.46916967.+	chr17	46916967	46916968	+	0	NA	"intron (NM_001261395, intron 1 of 11)"	AluSx1|SINE|Alu	8617	NM_001261393	10241	Hs.514920	NM_001261390	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
chr3.22843330.-	chr3	22843330	22843331	-	0	NA	Intergenic	L1PA2|LINE|L1	401454	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chrX.15872374.+	chrX	15872374	15872375	+	0	NA	"intron (NM_003916, intron 1 of 4)"	CpG	763	NM_001272071	8905	Hs.653504	NM_001272071	ENSG00000182287	AP1S2	MGC:1902|MRX59|MRXS21|MRXSF|SIGMA1B	"adaptor-related protein complex 1, sigma 2 subunit"	protein-coding
chr10.129196006.-	chr10	129196006	129196007	-	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	151607	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr10.133869275.+	chr10	133869275	133869276	+	0	NA	Intergenic	Intergenic	-49038	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr1.2721531.+	chr1	2721531	2721532	+	0	NA	Intergenic	Intergenic	-15301	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr11.9503858.-	chr11	9503858	9503859	-	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	-21346	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr7.129803694.-	chr7	129803694	129803695	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41644	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr10.120841965.-	chr10	120841965	120841966	-	0	NA	Intergenic	AluSx3|SINE|Alu	1631	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr13.99373172.-	chr13	99373172	99373173	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31757	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr18.904619.+	chr18	904619	904620	+	0	NA	promoter-TSS (NM_001099733)	promoter-TSS (NM_001099733)	-325	NM_001099733	116	Hs.727476	NM_001099733	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
chr6.150275517.+	chr6	150275517	150275518	+	0	NA	Intergenic	CpG	-9626	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr3.194483970.-	chr3	194483970	194483971	-	0	NA	"intron (NR_037891, intron 3 of 3)"	AluSx|SINE|Alu	-54820	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	miscRNA
chr10.30145003.-	chr10	30145003	30145004	-	0	NA	Intergenic	AluSx3|SINE|Alu	120273	NM_003174	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
chr1.86810056.-	chr1	86810056	86810057	-	0	NA	Intergenic	AluY|SINE|Alu	-51969	NM_001007022	57489	Hs.149360	NM_001007022	ENSG00000122417	ODF2L	RP5-977L11.1|dJ977L11.1	outer dense fiber of sperm tails 2-like	protein-coding
chr12.109745049.+	chr12	109745049	109745050	+	0	NA	"intron (NM_213596, intron 2 of 9)"	"intron (NM_213596, intron 2 of 9)"	1976	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
chr19.6307820.+	chr19	6307820	6307821	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25820	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr11.100596534.+	chr11	100596534	100596535	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38127	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr19.19336267.+	chr19	19336267	19336268	+	0	NA	"intron (NM_004386, intron 6 of 14)"	"intron (NM_004386, intron 6 of 14)"	13485	NM_004386	1463	Hs.169047	NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
chr14.32736842.-	chr14	32736842	32736843	-	0	NA	Intergenic	AluY|SINE|Alu	61637	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
chr3.29288104.-	chr3	29288104	29288105	-	0	NA	Intergenic	AluY|SINE|Alu	34699	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chrX.53123444.-	chrX	53123444	53123445	-	0	NA	Intergenic	CpG	-11902	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.238519122.-	chr1	238519122	238519123	-	0	NA	Intergenic	AluSg|SINE|Alu	-130195	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LOC339535	-	uncharacterized LOC339535	miscRNA
chrX.46938185.-	chrX	46938185	46938186	-	0	NA	"intron (NM_004683, intron 1 of 6)"	"intron (NM_004683, intron 1 of 6)"	-410	NM_004683	9104	Hs.77854	NM_004683	ENSG00000130988	RGN	GNL|RC|SMP30	regucalcin (senescence marker protein-30)	protein-coding
chrM.16359.-	chrM	16359	16360	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.10787005.-	chr9	10787005	10787006	-	0	NA	Intergenic	AluYc3|SINE|Alu	174282	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr10.3594306.+	chr10	3594306	3594307	+	0	NA	Intergenic	Intergenic	233167	NM_001160125	1316	Hs.709396	NM_001160124	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
chr15.41674330.+	chr15	41674330	41674331	+	0	NA	Intergenic	SVA_F|Other|Other	20328	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr16.30810980.+	chr16	30810980	30810981	+	0	NA	Intergenic	AluSx|SINE|Alu	-12457	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr2.240371694.+	chr2	240371694	240371695	+	0	NA	Intergenic	SVA_D|Other|Other	-49051	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.133788035.+	chr9	133788035	133788036	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18810	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr11.2940763.+	chr11	2940763	2940764	+	0	NA	"intron (NM_002555, intron 8 of 10)"	"intron (NM_002555, intron 8 of 10)"	9887	NM_003311	7262	Hs.154036	NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	"pleckstrin homology-like domain, family A, member 2"	protein-coding
chr3.129048078.+	chr3	129048078	129048079	+	0	NA	Intergenic	AluY|SINE|Alu	-12958	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr17.79427794.-	chr17	79427794	79427795	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9580	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr17.79611025.-	chr17	79611025	79611026	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1676	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr18.46969354.-	chr18	46969354	46969355	-	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	-17725	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr7.64493592.+	chr7	64493592	64493593	+	0	NA	Intergenic	SVA_C|Other|Other	-5140	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr1.10727897.+	chr1	10727897	10727898	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128836	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr1.2111174.+	chr1	2111174	2111175	+	0	NA	"intron (NM_001033581, intron 13 of 14)"	"intron (NM_001033581, intron 13 of 14)"	15040	NM_182533	199990	Hs.107101	NR_024445	ENSG00000162585	C1orf86	FAAP20|FP7162	chromosome 1 open reading frame 86	protein-coding
chr12.133081831.-	chr12	133081831	133081832	-	0	NA	"intron (NM_001142641, intron 1 of 16)"	"intron (NM_001142641, intron 1 of 16)"	-14674	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr16.88387037.+	chr16	88387037	88387038	+	0	NA	Intergenic	L2b|LINE|L2	-106842	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr1.23885812.-	chr1	23885812	23885813	-	0	NA	"exon (NM_002167, exon 1 of 3)"	"exon (NM_002167, exon 1 of 3)"	-473	NM_002167	3399	Hs.76884	NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	"inhibitor of DNA binding 3, dominant negative helix-loop-helix protein"	protein-coding
chr17.40536635.+	chr17	40536635	40536636	+	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	3770	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr9.16748462.+	chr9	16748462	16748463	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	122324	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr16.22675559.-	chr16	22675559	22675560	-	0	NA	Intergenic	AluJr|SINE|Alu	54044	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr2.217746865.+	chr2	217746865	217746866	+	0	NA	Intergenic	AluSz|SINE|Alu	-22083	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr7.45928557.+	chr7	45928557	45928558	+	0	NA	"exon (NM_000596, exon 1 of 4)"	"exon (NM_000596, exon 1 of 4)"	598	NM_000596	3484	Hs.642938	NM_000596	ENSG00000146678	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin-like growth factor binding protein 1	protein-coding
chr16.9185057.-	chr16	9185057	9185058	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	480	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr2.240187898.+	chr2	240187898	240187899	+	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	-39259	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr17.1927396.-	chr17	1927396	1927397	-	0	NA	"intron (NM_178568, intron 1 of 1)"	CpG	-782	NM_178568	146760	Hs.22917	NM_178568		RTN4RL1	NGRH2|NgR3	reticulon 4 receptor-like 1	protein-coding
chr3.160673492.-	chr3	160673492	160673493	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149191	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr9.127240312.+	chr9	127240312	127240313	+	0	NA	TTS (NM_001161808)	TTS (NM_001161808)	26889	NM_001161808	347088	Hs.454099	NM_001161808	ENSG00000180264	GPR144	PGR24	G protein-coupled receptor 144	protein-coding
chr6.33811448.+	chr6	33811448	33811449	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39655	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr16.33730707.-	chr16	33730707	33730708	-	0	NA	Intergenic	CpG	167464	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76	-	"RNA, U6 small nuclear 76"	snRNA
chr8.3825572.-	chr8	3825572	3825573	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026756	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr12.43208390.+	chr12	43208390	43208391	+	0	NA	Intergenic	AluY|SINE|Alu	-224818	NM_153026	144165	Hs.720221	NM_001144881	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
chr2.31691894.+	chr2	31691894	31691895	+	0	NA	Intergenic	AluY|SINE|Alu	-54283	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr2.131655146.+	chr2	131655146	131655147	+	0	NA	Intergenic	Intergenic	-19078	NM_032995	50649	Hs.469935	NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
chr1.38400887.-	chr1	38400887	38400888	-	0	NA	"intron (NM_005540, intron 6 of 23)"	AluSx3|SINE|Alu	-11842	NM_005540	3633	Hs.449942	NM_005540	ENSG00000204084	INPP5B	5PTase	"inositol polyphosphate-5-phosphatase, 75kDa"	protein-coding
chr16.49892614.+	chr16	49892614	49892615	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-784	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr16.3109392.+	chr16	3109392	3109393	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5921	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr2.25757616.-	chr2	25757616	25757617	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-115475	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr13.33774982.+	chr13	33774982	33774983	+	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	5205	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr12.127898789.+	chr12	127898789	127898790	+	0	NA	Intergenic	Intergenic	-467373	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chrX.119469560.+	chrX	119469560	119469561	+	0	NA	Intergenic	AluY|SINE|Alu	-24169	NM_001104544	55026	Hs.437563	NM_001104544	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
chr1.114299537.+	chr1	114299537	114299538	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2240	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr4.186887785.-	chr4	186887785	186887786	-	0	NA	Intergenic	AluSx1|SINE|Alu	9915	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr12.33352535.+	chr12	33352535	33352536	+	0	NA	Intergenic	LTR12|LTR|ERV1	240219	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chrM.11165.-	chrM	11165	11166	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.121338264.+	chr12	121338264	121338265	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3891	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr21.47581207.-	chr21	47581207	47581208	-	0	NA	"3' UTR (NM_032261, exon 4 of 4)"	"3' UTR (NM_032261, exon 4 of 4)"	5726	NM_206965	10841	Hs.415846	NM_006657	ENSG00000160282	FTCD	LCHC1	formiminotransferase cyclodeaminase	protein-coding
chr11.9503857.+	chr11	9503857	9503858	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21345	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr22.22259607.-	chr22	22259607	22259608	-	0	NA	Intergenic	AluSq2|SINE|Alu	37637	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr5.17207861.-	chr5	17207861	17207862	-	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	9071	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr14.105736127.-	chr14	105736127	105736128	-	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	20386	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr3.164852033.-	chr3	164852033	164852034	-	0	NA	Intergenic	AluY|SINE|Alu	55750	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr9.103189862.-	chr9	103189862	103189863	-	0	NA	"intron (NM_001198805, intron 1 of 2)"	CpG	-151	NM_001198805	91283	Hs.732964	NM_001198805		MSANTD3	C9orf30	Myb/SANT-like DNA-binding domain containing 3	protein-coding
chr10.12223735.-	chr10	12223735	12223736	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14226	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr1.37453944.+	chr1	37453944	37453945	+	0	NA	"intron (NM_000831, intron 1 of 15)"	"intron (NM_000831, intron 1 of 15)"	45900	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr4.26589741.-	chr4	26589741	26589742	-	0	NA	"intron (NM_018317, intron 1 of 20)"	AluY|SINE|Alu	-4195	NM_018317	55296	Hs.479403	NM_018317	ENSG00000109680	TBC1D19	-	"TBC1 domain family, member 19"	protein-coding
chr11.19881570.+	chr11	19881570	19881571	+	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	-99941	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr10.73847519.-	chr10	73847519	73847520	-	0	NA	"intron (NM_001134434, intron 2 of 2)"	CpG	-1012	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr14.105242400.+	chr14	105242400	105242401	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17538	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr22.50958988.-	chr22	50958988	50958989	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-5045	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr8.33580505.+	chr8	33580505	33580506	+	0	NA	Intergenic	CpG	-123066	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
chr19.46277576.-	chr19	46277576	46277577	-	0	NA	"intron (NM_001081563, intron 8 of 13)"	AluY|SINE|Alu	5079	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
chr17.14204676.-	chr17	14204676	14204677	-	0	NA	"5' UTR (NM_006041, exon 1 of 2)"	"5' UTR (NM_006041, exon 1 of 2)"	-170	NM_006041	9953	Hs.48384	NM_006041		HS3ST3B1	30ST3B1|3OST3B1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding
chr10.2565553.-	chr10	2565553	2565554	-	0	NA	Intergenic	Intergenic	208285	NR_038884	399708	Hs.521270	NR_038884		LINC00701	-	long intergenic non-protein coding RNA 701	miscRNA
chr19.18880964.+	chr19	18880964	18880965	+	0	NA	"intron (NM_015321, intron 10 of 13)"	"intron (NM_015321, intron 10 of 13)"	21150	NM_000095	1311	Hs.1584	NM_000095	ENSG00000105664	COMP	EDM1|EPD1|MED|PSACH|THBS5	cartilage oligomeric matrix protein	protein-coding
chr2.64811825.+	chr2	64811825	64811826	+	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	-22621	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr6.170055446.+	chr6	170055446	170055447	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46713	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr12.31575358.+	chr12	31575358	31575359	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96199	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr4.166248592.+	chr4	166248592	166248593	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-226	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr15.41532131.-	chr15	41532131	41532132	-	0	NA	"intron (NM_007236, intron 1 of 6)"	AluY|SINE|Alu	-8694	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr7.155243672.+	chr7	155243672	155243673	+	0	NA	Intergenic	CpG	-7152	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr2.130499513.+	chr2	130499513	130499514	+	0	NA	Intergenic	Intergenic	192377	NR_026740	389033	Hs.380682	NR_026740	ENSG00000214100	LOC389033	-	placenta-specific 9 pseudogene	pseudo
chr11.126081357.-	chr11	126081357	126081358	-	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	-230	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr21.47461336.-	chr21	47461336	47461337	-	0	NA	Intergenic	Intergenic	56697	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr19.8408098.+	chr19	8408098	8408099	+	0	NA	promoter-TSS (NM_198471)	promoter-TSS (NM_198471)	48	NM_198471	256949	Hs.322473	NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
chrX.15336067.-	chrX	15336067	15336068	-	0	NA	Intergenic	AluY|SINE|Alu	2321	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr2.242027479.-	chr2	242027479	242027480	-	0	NA	"non-coding (NR_028051, exon 4 of 4)"	"non-coding (NR_028051, exon 4 of 4)"	-14268	NR_028049	130916	Hs.159556	NM_182501	ENSG00000122085	MTERFD2	MTERF4	MTERF domain containing 2	protein-coding
chr12.33592874.-	chr12	33592874	33592875	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	120	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr2.211494533.-	chr2	211494533	211494534	-	0	NA	"intron (NM_001122634, intron 11 of 27)"	AluY|SINE|Alu	-12238	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	miscRNA
chr8.125234409.-	chr8	125234409	125234410	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150531	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr17.40440549.-	chr17	40440549	40440550	-	0	NA	"5' UTR (NM_003152, exon 2 of 20)"	"5' UTR (NM_003152, exon 2 of 20)"	-984	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chrY.9930535.+	chrY	9930535	9930536	+	0	NA	Intergenic	5S|rRNA|rRNA	182128	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr7.6454059.-	chr7	6454059	6454060	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	-33584	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr6.157734053.+	chr6	157734053	157734054	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11200	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr7.3119875.-	chr7	3119875	3119876	-	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	36366	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr17.29335470.+	chr17	29335470	29335471	+	0	NA	Intergenic	CpG	33117	NR_002221	503645	Hs.683578	NR_002221		DPRXP4	-	divergent-paired related homeobox pseudogene 4	pseudo
chr10.12405355.+	chr10	12405355	12405356	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13772	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr19.39810731.+	chr19	39810731	39810732	+	0	NA	Intergenic	Intergenic	-4755	NM_020862	57622	Hs.97860	NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
chr6.17281940.-	chr6	17281940	17281941	-	0	NA	promoter-TSS (NM_153020)	promoter-TSS (NM_153020)	-131	NM_001143942	221662	Hs.519904	NM_001143941	ENSG00000112183	RBM24	RNPC6|dJ259A10.1	RNA binding motif protein 24	protein-coding
chr3.31573982.+	chr3	31573982	31573983	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-509	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr7.2545009.-	chr7	2545009	2545010	-	0	NA	Intergenic	Intergenic	7154	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr1.32731847.-	chr1	32731847	32731848	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7865	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chrX.54269610.-	chrX	54269610	54269611	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59896	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr12.131191652.-	chr12	131191652	131191653	-	0	NA	Intergenic	Intergenic	-132167	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr8.14882298.-	chr8	14882298	14882299	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171279	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr7.53196221.-	chr7	53196221	53196222	-	0	NA	Intergenic	AluY|SINE|Alu	-92872	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr1.101786793.+	chr1	101786793	101786794	+	0	NA	Intergenic	AluY|SINE|Alu	19658	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr2.61701786.+	chr2	61701786	61701787	+	0	NA	Intergenic	AluSg|SINE|Alu	-3937	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr8.89783908.+	chr8	89783908	89783909	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-444191	NM_005941	4325	Hs.546267	NM_005941		MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16 (membrane-inserted)	protein-coding
chr2.25142810.+	chr2	25142810	25142811	+	0	NA	promoter-TSS (NM_004036)	promoter-TSS (NM_004036)	-755	NM_004036	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC3	adenylate cyclase 3	protein-coding
chr19.35418161.-	chr19	35418161	35418162	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-354	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr10.88412751.+	chr10	88412751	88412752	+	0	NA	Intergenic	Intergenic	-1563	NM_001030015	94233	Hs.283922	NM_001030015	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
chr2.55647023.+	chr2	55647023	55647024	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	34	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr9.6608152.+	chr9	6608152	6608153	+	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	37540	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr1.24513607.-	chr1	24513607	24513608	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-158	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr6.167317190.-	chr6	167317190	167317191	-	0	NA	Intergenic	Intergenic	41419	NM_001006932	6196	Hs.655277	NM_001006932	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3	"ribosomal protein S6 kinase, 90kDa, polypeptide 2"	protein-coding
chr2.106682195.+	chr2	106682195	106682196	+	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	82	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr20.48080577.-	chr20	48080577	48080578	-	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	-18604	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr19.47628025.-	chr19	47628025	47628026	-	0	NA	Intergenic	AluY|SINE|Alu	6055	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr8.95668736.+	chr8	95668736	95668737	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15372	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr16.22019309.+	chr16	22019309	22019310	+	0	NA	promoter-TSS (NM_001164579)	promoter-TSS (NM_001164579)	-147	NM_001164579	730094	Hs.498890	NM_173501	ENSG00000185716	C16orf52	-	chromosome 16 open reading frame 52	protein-coding
chr21.35774207.+	chr21	35774207	35774208	+	0	NA	Intergenic	AluSc8|SINE|Alu	26458	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr4.569928.+	chr4	569928	569929	+	0	NA	Intergenic	CpG	-49435	NM_000283	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr1.32122106.-	chr1	32122106	32122107	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11268	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr4.1358103.+	chr4	1358103	1358104	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16999	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr1.43612790.+	chr1	43612790	43612791	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-804	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chr3.48117723.-	chr3	48117723	48117724	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-13046	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr2.36958615.+	chr2	36958615	36958616	+	0	NA	"intron (NM_053276, intron 3 of 15)"	AluSc|SINE|Alu	34782	NM_001177969	5212	Hs.137415	NM_001177969	ENSG00000205221	VIT	-	vitrin	protein-coding
chr8.104645095.-	chr8	104645095	104645096	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132119	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr9.33194265.+	chr9	33194265	33194266	+	0	NA	Intergenic	AluY|SINE|Alu	-26909	NM_001497	2683	Hs.272011	NM_001497	ENSG00000086062	B4GALT1	B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1	"UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1"	protein-coding
chr7.5396301.+	chr7	5396301	5396302	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66876	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr2.171830159.-	chr2	171830159	171830160	-	0	NA	Intergenic	CpG	-45123	NM_015530	26003	Hs.431317	NM_001201428	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	"golgi reassembly stacking protein 2, 55kDa"	protein-coding
chr1.16166985.+	chr1	16166985	16166986	+	0	NA	"intron (NR_024279, intron 1 of 1)"	AluSc8|SINE|Alu	-7374	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chr19.44489490.-	chr19	44489490	44489491	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1168	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr2.95825030.-	chr2	95825030	95825031	-	0	NA	"5' UTR (NM_032788, exon 1 of 5)"	"5' UTR (NM_032788, exon 1 of 5)"	-233	NM_032788	84874	Hs.655109	NM_032788	ENSG00000144026	ZNF514	-	zinc finger protein 514	protein-coding
chr10.35559788.+	chr10	35559788	35559789	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23835	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr2.48784475.-	chr2	48784475	48784476	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11684	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr19.20713810.+	chr19	20713810	20713811	+	0	NA	Intergenic	SVA_D|Other|Other	34816	NM_001159293	100129842	Hs.515696	NM_001159293		ZNF737	ZNF102	zinc finger protein 737	protein-coding
chr14.96343624.-	chr14	96343624	96343625	-	0	NA	"intron (NR_038861, intron 1 of 1)"	"intron (NR_038861, intron 1 of 1)"	-515	NR_038861	100507043	Hs.455955	NR_038861	ENSG00000250366	LINC00617	-	long intergenic non-protein coding RNA 617	miscRNA
chr13.21872300.+	chr13	21872300	21872301	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	36	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr11.68704222.+	chr11	68704222	68704223	+	0	NA	"exon (NM_002180, exon 13 of 15)"	"exon (NM_002180, exon 13 of 15)"	32903	NM_002180	3508	Hs.503048	NM_002180	ENSG00000132740	IGHMBP2	CATF1|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7	immunoglobulin mu binding protein 2	protein-coding
chr14.106359652.-	chr14	106359652	106359653	-	0	NA	Intergenic	Intergenic	24186	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr5.176105479.+	chr5	176105479	176105480	+	0	NA	Intergenic	Intergenic	31091	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr6.85476324.+	chr6	85476324	85476325	+	0	NA	Intergenic	Intergenic	-2370	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr1.3376547.+	chr1	3376547	3376548	+	0	NA	"intron (NM_014448, intron 1 of 14)"	"intron (NM_014448, intron 1 of 14)"	5400	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr5.5953953.-	chr5	5953953	5953954	-	0	NA	Intergenic	Intergenic	-383452	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr7.101668363.-	chr7	101668363	101668364	-	0	NA	"intron (NM_001202544, intron 2 of 21)"	MLT1D|LTR|ERVL-MaLR	-207481	NM_181552	1523	Hs.191482	NM_001202543	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
chr16.78282851.-	chr16	78282851	78282852	-	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	-149524	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr17.48207397.-	chr17	48207397	48207398	-	0	NA	promoter-TSS (NM_174920)	promoter-TSS (NM_174920)	151	NM_001257359	201191	Hs.567769	NM_001257359	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
chr3.1144538.+	chr3	1144538	1144539	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9909	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr22.24237213.+	chr22	24237213	24237214	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	648	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chrX.81762766.+	chrX	81762766	81762767	+	0	NA	Intergenic	AluY|SINE|Alu	-1000503	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chrX.81762788.-	chrX	81762788	81762789	-	0	NA	Intergenic	AluY|SINE|Alu	1000481	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr19.39915272.-	chr19	39915272	39915273	-	0	NA	"exon (NM_022835, exon 19 of 19)"	"exon (NM_022835, exon 19 of 19)"	-11346	NM_001020	6217	Hs.397609	NM_001020	ENSG00000105193	RPS16	S16	ribosomal protein S16	protein-coding
chr5.40801263.+	chr5	40801263	40801264	+	0	NA	Intergenic	SVA_E|Other|Other	-2966	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr9.131013030.+	chr9	131013030	131013031	+	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	-5721	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr2.173941055.-	chr2	173941055	173941056	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-490	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr6.41515942.+	chr6	41515942	41515943	+	0	NA	"intron (NM_001012427, intron 1 of 16)"	CpG	1778	NM_138457	116113	Hs.131436	NM_001012426	ENSG00000137166	FOXP4	hFKHLA	forkhead box P4	protein-coding
chr17.50235680.-	chr17	50235680	50235681	-	0	NA	"5' UTR (NM_001082534, exon 2 of 10)"	"5' UTR (NM_001082534, exon 2 of 10)"	-452	NM_020178	56934	Hs.463466	NM_001082533	ENSG00000154975	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase X	protein-coding
chr5.612620.-	chr5	612620	612621	-	0	NA	"intron (NM_018140, intron 1 of 11)"	CpG	-215	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72kDa	protein-coding
chr14.106359688.-	chr14	106359688	106359689	-	0	NA	Intergenic	Intergenic	24150	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr12.79439006.+	chr12	79439006	79439007	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-427	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr6.95173068.-	chr6	95173068	95173069	-	0	NA	Intergenic	L1MA3|LINE|L1	-756267	NR_015362	643432	Hs.509936	NR_015362		TSG1	-	tumor suppressor TSG1	miscRNA
chr20.33104544.+	chr20	33104544	33104545	+	0	NA	"intron (NM_014183, intron 1 of 3)"	"intron (NM_014183, intron 1 of 3)"	340	NM_014183	83658	Hs.593920	NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	"dynein, light chain, roadblock-type 1"	protein-coding
chr1.6132111.-	chr1	6132111	6132112	-	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	-25937	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr5.179173228.+	chr5	179173228	179173229	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluSx1|SINE|Alu	13377	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr2.155617294.+	chr2	155617294	155617295	+	0	NA	"intron (NM_002239, intron 2 of 2)"	AluY|SINE|Alu	62201	NM_001260509	3760	Hs.591606	NM_001260508	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	"potassium inwardly-rectifying channel, subfamily J, member 3"	protein-coding
chr18.73357766.-	chr18	73357766	73357767	-	0	NA	Intergenic	L2|LINE|L2	218177	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr1.567427.+	chr1	567427	567428	+	0	NA	Intergenic	Intergenic	54607	NM_001005224	26683	Hs.722724	NM_001005224	ENSG00000230178	OR4F3	-	"olfactory receptor, family 4, subfamily F, member 3"	protein-coding
chr19.17837590.-	chr19	17837590	17837591	-	0	NA	"exon (NM_018174, exon 5 of 7)"	"exon (NM_018174, exon 5 of 7)"	-7287	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chr6.169849664.-	chr6	169849664	169849665	-	0	NA	Intergenic	Intergenic	195527	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr1.150897072.+	chr1	150897072	150897073	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1743	NM_012432	9869	Hs.643565	NM_001145415	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	"SET domain, bifurcated 1"	protein-coding
chr5.1137716.-	chr5	1137716	1137717	-	0	NA	Intergenic	Intergenic	25544	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr4.27215130.-	chr4	27215130	27215131	-	0	NA	Intergenic	AluY|SINE|Alu	-352817	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr2.129045208.+	chr2	129045208	129045209	+	0	NA	"intron (NM_004807, intron 1 of 1)"	"intron (NM_004807, intron 1 of 1)"	30963	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr15.91599288.-	chr15	91599288	91599289	-	0	NA	Intergenic	Intergenic	33455	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr5.114712429.-	chr5	114712429	114712430	-	0	NA	Intergenic	AluYc3|SINE|Alu	79971	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr4.92938352.+	chr4	92938352	92938353	+	0	NA	Intergenic	AluY|SINE|Alu	-287198	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr4.26862489.+	chr4	26862489	26862490	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	176	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr11.66512899.+	chr11	66512899	66512900	+	0	NA	"intron (NR_048553, intron 1 of 14)"	"intron (NR_048553, intron 1 of 14)"	692	NM_024650	79703	Hs.292088	NM_024650	ENSG00000173715	C11orf80	-	chromosome 11 open reading frame 80	protein-coding
chr11.63286740.-	chr11	63286740	63286741	-	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	-11281	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr1.150947157.-	chr1	150947157	150947158	-	0	NA	"5' UTR (NM_181746, exon 1 of 11)"	"5' UTR (NM_181746, exon 1 of 11)"	-322	NM_022075	29956	Hs.744017	NM_022075	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
chr9.71711350.-	chr9	71711350	71711351	-	0	NA	"intron (NM_001161706, intron 4 of 4)"	AluSg|SINE|Alu	24830	NM_001170414	9414	Hs.736223	NM_001170414	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|X104|ZO2	tight junction protein 2	protein-coding
chr7.5583889.-	chr7	5583889	5583890	-	0	NA	Intergenic	AluY|SINE|Alu	13657	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr21.25229795.+	chr21	25229795	25229796	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-472639	NR_040254	266917	Hs.145622	NR_040254	ENSG00000228592	D21S2088E	-	D21S2088E	miscRNA
chr10.133016251.-	chr10	133016251	133016252	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93733	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chrX.90990389.+	chrX	90990389	90990390	+	0	NA	Intergenic	AluY|SINE|Alu	-43871	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr9.131293138.-	chr9	131293138	131293139	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21699	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr12.122709767.-	chr12	122709767	122709768	-	0	NA	"intron (NR_024600, intron 2 of 6)"	AluSz|SINE|Alu	-2301	NR_024601	56616	Hs.169611	NM_019887	ENSG00000184047	DIABLO	DFNA64|DIABLO-S|SMAC|SMAC3	"diablo, IAP-binding mitochondrial protein"	protein-coding
chr17.18137228.+	chr17	18137228	18137229	+	0	NA	"exon (NM_004140, exon 5 of 23)"	"exon (NM_004140, exon 5 of 23)"	8292	NM_004140	3996	Hs.513983	NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL	lethal giant larvae homolog 1 (Drosophila)	protein-coding
chr20.3140446.-	chr20	3140446	3140447	-	0	NA	promoter-TSS (NM_021826)	promoter-TSS (NM_021826)	-86	NM_021826	60493	Hs.741168	NM_021826	ENSG00000215251	FASTKD5	dJ1187M17.5	FAST kinase domains 5	protein-coding
chr5.1494503.-	chr5	1494503	1494504	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29573	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr6.65337816.-	chr6	65337816	65337817	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673495	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr5.137550369.-	chr5	137550369	137550370	-	0	NA	Intergenic	AluY|SINE|Alu	1337	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr1.156527511.-	chr1	156527511	156527512	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14885	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr10.65617419.-	chr10	65617419	65617420	-	0	NA	Intergenic	L1PA5|LINE|L1	-336296	NM_001001330	221035	Hs.499833	NM_001001330	ENSG00000165476	REEP3	C10orf74	receptor accessory protein 3	protein-coding
chr16.89269030.+	chr16	89269030	89269031	+	0	NA	Intergenic	L1MB5|LINE|L1	-2501	NM_001242757	146429	Hs.743726	NM_001242757		SLC22A31	-	"solute carrier family 22, member 31"	protein-coding
chr15.28492781.-	chr15	28492781	28492782	-	0	NA	"intron (NM_004667, intron 21 of 92)"	AluSq2|SINE|Alu	-74517	NM_004667	8924	Hs.741019	NM_004667	ENSG00000128731	HERC2	D15F37S1|SHEP1|jdf2|p528	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding
chr4.26862271.-	chr4	26862271	26862272	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	42	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr14.103988557.+	chr14	103988557	103988558	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	639	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr10.73848190.+	chr10	73848190	73848191	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	341	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr20.43378969.-	chr20	43378969	43378970	-	0	NA	"exon (NM_022358, exon 2 of 2)"	"exon (NM_022358, exon 2 of 2)"	-4481	NM_022358	60598	Hs.528664	NM_022358		KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	"potassium channel, subfamily K, member 15"	protein-coding
chr19.2400853.+	chr19	2400853	2400854	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11069	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr19.7929638.-	chr19	7929638	7929639	-	0	NA	"3' UTR (NM_001159944, exon 19 of 19)"	"3' UTR (NM_001159944, exon 19 of 19)"	-9688	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr12.105389751.-	chr12	105389751	105389752	-	0	NA	Intergenic	AluY|SINE|Alu	-9653	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr8.104851160.-	chr8	104851160	104851161	-	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	-19744	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr11.17905666.+	chr11	17905666	17905667	+	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	128971	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr22.38949059.+	chr22	38949059	38949060	+	0	NA	"intron (NM_007068, intron 6 of 13)"	AluSx1|SINE|Alu	17130	NM_007068	11144	Hs.339396	NM_007068	ENSG00000100206	DMC1	DMC1H|HsLim15|LIM15|dJ199H16.1	"DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)"	protein-coding
chr14.105536314.+	chr14	105536314	105536315	+	0	NA	Intergenic	Intergenic	-4560	NM_013345	29933	Hs.532504	NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
chr19.13303158.-	chr19	13303158	13303159	-	0	NA	Intergenic	AluSq2|SINE|Alu	-41876	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr1.16698153.+	chr1	16698153	16698154	+	0	NA	"intron (NR_073500, intron 1 of 1)"	AluY|SINE|Alu	4628	NR_073500	26099	Hs.252967	NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
chr11.1122346.+	chr11	1122346	1122347	+	0	NA	Intergenic	Intergenic	47471	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr3.128362567.-	chr3	128362567	128362568	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7152	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr22.21240009.-	chr22	21240009	21240010	-	0	NA	"intron (NM_004782, intron 4 of 4)"	"intron (NM_004782, intron 4 of 4)"	-26717	NM_004782	9342	Hs.108002	NM_004782	ENSG00000099940	SNAP29	CEDNIK|SNAP-29	"synaptosomal-associated protein, 29kDa"	protein-coding
chr7.158671010.-	chr7	158671010	158671011	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21741	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr8.144446734.+	chr8	144446734	144446735	+	0	NA	Intergenic	Intergenic	4071	NR_026785	78998	Hs.618477	NM_024035	ENSG00000254389	RHPN1-AS1	C8orf51	RHPN1 antisense RNA 1 (head to head)	miscRNA
chr11.66676687.+	chr11	66676687	66676688	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1347	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr1.183892742.+	chr1	183892742	183892743	+	0	NA	"intron (NM_015149, intron 18 of 18)"	MIRc|SINE|MIR	114121	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr10.28821811.-	chr10	28821811	28821812	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-389	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr18.12434322.-	chr18	12434322	12434323	-	0	NA	Intergenic	CpG	-26427	NM_006553	10650	Hs.514718	NM_001142406	ENSG00000141391	SLMO1	C18orf43|HFL-EDDG1|PRELID3A	slowmo homolog 1 (Drosophila)	protein-coding
chrX.133643977.+	chrX	133643977	133643978	+	0	NA	Intergenic	L1PA10|LINE|L1	30315	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr1.92407879.+	chr1	92407879	92407880	+	0	NA	Intergenic	AluY|SINE|Alu	-7049	NM_207189	676	Hs.482520	NM_001242805	ENSG00000137948	BRDT	BRD6|CT9	"bromodomain, testis-specific"	protein-coding
chr5.122861596.+	chr5	122861596	122861597	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13803	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr20.33283446.-	chr20	33283446	33283447	-	0	NA	Intergenic	AluY|SINE|Alu	8702	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr16.69735137.+	chr16	69735137	69735138	+	0	NA	"3' UTR (NM_001113178, exon 15 of 15)"	"3' UTR (NM_001113178, exon 15 of 15)"	25396	NM_001025434	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	"NAD(P)H dehydrogenase, quinone 1"	protein-coding
chr2.234762643.+	chr2	234762643	234762644	+	0	NA	"intron (NM_018410, intron 1 of 8)"	CpG	569	NM_018410	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
chr1.32679389.-	chr1	32679389	32679390	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4694	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr2.128965883.+	chr2	128965883	128965884	+	0	NA	Intergenic	SVA_F|Other|Other	110288	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr2.191296207.+	chr2	191296207	191296208	+	0	NA	"intron (NM_017694, intron 2 of 7)"	SVA_D|Other|Other	23126	NM_017694	54842	Hs.744117	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
chr17.4444251.+	chr17	4444251	4444252	+	0	NA	"intron (NM_014520, intron 24 of 25)"	"intron (NM_014520, intron 24 of 25)"	14430	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr12.3420550.+	chr12	3420550	3420551	+	0	NA	Intergenic	Intergenic	-69965	NM_001256536	56341	Hs.504530	NM_001256537	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
chrX.53111619.-	chrX	53111619	53111620	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-77	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.31103198.+	chr16	31103198	31103199	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-3068	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr1.10727877.+	chr1	10727877	10727878	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128856	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr11.61658930.-	chr11	61658930	61658931	-	0	NA	promoter-TSS (NM_021727)	promoter-TSS (NM_021727)	-76	NM_021727	3995	Hs.21765	NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
chr1.114299615.-	chr1	114299615	114299616	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2162	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr2.10220062.-	chr2	10220062	10220063	-	0	NA	"exon (NM_001037160, exon 1 of 3)"	"exon (NM_001037160, exon 1 of 3)"	-476	NM_001037160	192668	Hs.720471	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
chr1.52460236.+	chr1	52460236	52460237	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3800	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	"RAB3B, member RAS oncogene family"	protein-coding
chr5.86907770.-	chr5	86907770	86907771	-	0	NA	Intergenic	AluY|SINE|Alu	198920	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr15.89721827.+	chr15	89721827	89721828	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43095	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr8.82599892.+	chr8	82599892	82599893	+	0	NA	Intergenic	AluY|SINE|Alu	-1303	NM_001144879	3612	Hs.656694	NM_001144878		IMPA1	IMP|IMPA	inositol(myo)-1(or 4)-monophosphatase 1	protein-coding
chr3.8721170.+	chr3	8721170	8721171	+	0	NA	Intergenic	Intergenic	-27406	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr2.119613145.+	chr2	119613145	119613146	+	0	NA	Intergenic	CpG	-7386	NM_001426	2019	Hs.271977	NM_001426	ENSG00000163064	EN1	-	engrailed homeobox 1	protein-coding
chr5.319339.+	chr5	319339	319340	+	0	NA	"intron (NM_001242412, intron 1 of 10)"	"intron (NM_001242412, intron 1 of 10)"	15048	NM_001242412	57491	Hs.50823	NM_001242412	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
chr2.178267552.-	chr2	178267552	178267553	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10081	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr7.4821417.+	chr7	4821417	4821418	+	0	NA	"intron (NM_014855, intron 3 of 16)"	"intron (NM_014855, intron 3 of 16)"	6155	NM_014855	9907	Hs.558440	NM_014855		AP5Z1	KIAA0415|SPG48|zeta	"adaptor-related protein complex 5, zeta 1 subunit"	protein-coding
chr16.70356430.-	chr16	70356430	70356431	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23368	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr11.16894108.-	chr11	16894108	16894109	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133960	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr7.150812717.-	chr7	150812717	150812718	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28891	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr3.195498030.-	chr3	195498030	195498031	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40814	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr3.1144545.-	chr3	1144545	1144546	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9916	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr15.31063085.+	chr15	31063085	31063086	+	0	NA	"non-coding (NR_038254, exon 5 of 5)"	"non-coding (NR_038254, exon 5 of 5)"	-47154	NR_072991	390561	Hs.721293	NR_072991		HERC2P10	-	hect domain and RLD 2 pseudogene 10	pseudo
chr16.1835621.+	chr16	1835621	1835622	+	0	NA	"intron (NM_012225, intron 1 of 6)"	"intron (NM_012225, intron 1 of 6)"	2688	NM_012225	10101	Hs.256549	NM_012225	ENSG00000095906	NUBP2	CFD1|NUBP1	nucleotide binding protein 2	protein-coding
chr2.224724783.+	chr2	224724783	224724784	+	0	NA	Intergenic	AluSp|SINE|Alu	-22464	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chrY.8786257.-	chrY	8786257	8786258	-	0	NA	Intergenic	SVA_C|Other|Other	100834	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr7.127655.+	chr7	127655	127656	+	0	NA	Intergenic	Intergenic	-65314	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	"family with sequence similarity 20, member C"	protein-coding
chr14.105736128.+	chr14	105736128	105736129	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20387	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr10.14719523.-	chr10	14719523	14719524	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97373	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr11.1946057.-	chr11	1946057	1946058	-	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	-5258	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr2.242500498.+	chr2	242500498	242500499	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1940	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr2.109090542.-	chr2	109090542	109090543	-	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	-24965	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr4.96097966.+	chr4	96097966	96097967	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85324	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr19.10229405.+	chr19	10229405	10229406	+	0	NA	"intron (NM_003755, intron 4 of 10)"	"intron (NM_003755, intron 4 of 10)"	1194	NM_003755	8666	Hs.529059	NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	"eukaryotic translation initiation factor 3, subunit G"	protein-coding
chr3.160673497.-	chr3	160673497	160673498	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149186	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr1.217394777.-	chr1	217394777	217394778	-	0	NA	Intergenic	AluSq2|SINE|Alu	83680	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr9.138437780.+	chr9	138437780	138437781	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-205	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr12.6738379.-	chr12	6738379	6738380	-	0	NA	"intron (NM_020400, intron 1 of 1)"	AluSx|SINE|Alu	-2436	NM_001142961	57121	Hs.155538	NM_001142961	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
chr14.80915392.+	chr14	80915392	80915393	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-217995	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr10.120946055.-	chr10	120946055	120946056	-	0	NA	Intergenic	AluJb|SINE|Alu	7710	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr1.228538613.+	chr1	228538613	228538614	+	0	NA	"exon (NM_001098623, exon 77 of 105)"	"exon (NM_001098623, exon 77 of 105)"	55904	NM_145214	81559	Hs.13543	NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
chr6.121079720.-	chr6	121079720	121079721	-	0	NA	Intergenic	AluY|SINE|Alu	-575924	NM_152730	221322	Hs.121396	NM_152730	ENSG00000146350	C6orf170	BROMI|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	chromosome 6 open reading frame 170	protein-coding
chr9.138065651.+	chr9	138065651	138065652	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7804	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr1.97228914.+	chr1	97228914	97228915	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41739	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr13.37494376.-	chr13	37494376	37494377	-	0	NA	promoter-TSS (NM_001127217)	promoter-TSS (NM_001127217)	-33	NM_001127217	4093	Hs.123119	NM_001127217	ENSG00000120693	SMAD9	MADH6|MADH9|SMAD8|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
chr7.99835955.-	chr7	99835955	99835956	-	0	NA	"intron (NM_178831, intron 1 of 4)"	AluJb|SINE|Alu	-19084	NM_024070	79037	Hs.729356	NM_024070	ENSG00000213413	PVRIG	C7orf15	poliovirus receptor related immunoglobulin domain containing	protein-coding
chr8.60674610.-	chr8	60674610	60674611	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519344	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr17.73615834.+	chr17	73615834	73615835	+	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	-13680	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr7.100318533.+	chr7	100318533	100318534	+	0	NA	"5' UTR (NM_000799, exon 1 of 5)"	"5' UTR (NM_000799, exon 1 of 5)"	110	NM_000799	2056	Hs.2303	NM_000799	ENSG00000130427	EPO	EP|MVCD2	erythropoietin	protein-coding
chr11.69195425.-	chr11	69195425	69195426	-	0	NA	Intergenic	Intergenic	-133803	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr1.181074631.-	chr1	181074631	181074632	-	0	NA	Intergenic	CpG	-16993	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr12.34500197.+	chr12	34500197	34500198	+	0	NA	Intergenic	Intergenic	324981	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr6.168352176.-	chr6	168352176	168352177	-	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	-25443	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr17.4697345.+	chr17	4697345	4697346	+	0	NA	Intergenic	AluY|SINE|Alu	-2094	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr13.65723892.-	chr13	65723892	65723893	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-1412324	NR_002171	283491	Hs.694575	NR_002171		OR7E156P	-	"olfactory receptor, family 7, subfamily E, member 156 pseudogene"	pseudo
chr2.96149431.-	chr2	96149431	96149432	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1048	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr14.102109485.-	chr14	102109485	102109486	-	0	NA	Intergenic	AluY|SINE|Alu	-81797	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr20.23973645.-	chr20	23973645	23973646	-	0	NA	Intergenic	AluJr|SINE|Alu	4229	NM_178311	92086	Hs.355394	NM_178311	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
chr10.112124064.+	chr10	112124064	112124065	+	0	NA	Intergenic	Intergenic	-59357	NM_005871	10285	Hs.632093	NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
chr12.34492618.+	chr12	34492618	34492619	+	0	NA	Intergenic	GSATII|Satellite|centr	317402	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr20.42218543.+	chr20	42218543	42218544	+	0	NA	Intergenic	AluJb|SINE|Alu	-1036	NM_016004	51098	Hs.444332	NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1	intraflagellar transport 52 homolog (Chlamydomonas)	protein-coding
chr8.107613695.+	chr8	107613695	107613696	+	0	NA	"intron (NM_018002, intron 3 of 15)"	MLT1A|LTR|ERVL-MaLR	-56341	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr2.20424083.+	chr2	20424083	20424084	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	844	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr5.1137784.-	chr5	1137784	1137785	-	0	NA	Intergenic	Intergenic	25612	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr1.154218109.-	chr1	154218109	154218110	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	"intron (NM_001127320, intron 10 of 24)"	-24784	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr5.149874650.-	chr5	149874650	149874651	-	0	NA	Intergenic	AluSx4|SINE|Alu	13024	NM_001543	3340	Hs.222055	NM_001543	ENSG00000070614	NDST1	HSST|NST1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding
chr2.240980332.-	chr2	240980332	240980333	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2067	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr19.19655302.-	chr19	19655302	19655303	-	0	NA	"exon (NM_153221, exon 8 of 8)"	"exon (NM_153221, exon 8 of 8)"	-6228	NM_153221	148113	Hs.279574	NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
chr16.89034182.-	chr16	89034182	89034183	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9322	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr9.91606471.-	chr9	91606471	91606472	-	0	NA	"exon (NM_001142413, exon 2 of 3)"	"exon (NM_001142413, exon 2 of 3)"	-147	NM_005226	1903	Hs.585118	NM_005226	ENSG00000213694	S1PR3	EDG-3|EDG3|LPB3|S1P3	sphingosine-1-phosphate receptor 3	protein-coding
chr6.168443349.-	chr6	168443349	168443350	-	0	NA	"exon (NM_030615, exon 8 of 9)"	"exon (NM_030615, exon 8 of 9)"	-24796	NM_005355	3834	Hs.150013	NM_005355	ENSG00000125337	KIF25	KNSL3	kinesin family member 25	protein-coding
chr8.142339408.+	chr8	142339408	142339409	+	0	NA	Intergenic	Intergenic	-11240	NR_024441	731779	Hs.586414	NR_024441	ENSG00000253595	LOC731779	-	uncharacterized LOC731779	miscRNA
chr20.46019504.+	chr20	46019504	46019505	+	0	NA	Intergenic	AluY|SINE|Alu	-34030	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr22.41521442.-	chr22	41521442	41521443	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32828	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chrX.53975586.-	chrX	53975586	53975587	-	0	NA	"intron (NM_015107, intron 19 of 21)"	AluSx|SINE|Alu	-94041	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr20.4729563.-	chr20	4729563	4729564	-	0	NA	Intergenic	Intergenic	8249	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr8.67617949.-	chr8	67617949	67617950	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluY|SINE|Alu	6704	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr16.440489.+	chr16	440489	440490	+	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	-6703	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr8.76091535.-	chr8	76091535	76091536	-	0	NA	Intergenic	L1PA16|LINE|L1	-194827	NM_031461	83690	Hs.436542	NM_031461	ENSG00000121005	CRISPLD1	CRISP10|LCRISP1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding
chr22.19172038.+	chr22	19172038	19172039	+	0	NA	"intron (NM_001835, intron 28 of 31)"	"intron (NM_001835, intron 28 of 31)"	-5700	NR_046298	6576	Hs.111024	NM_001256534	ENSG00000100075	SLC25A1	CTP|SEA|SLC20A3	"solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1"	protein-coding
chr16.29324765.+	chr16	29324765	29324766	+	0	NA	"intron (NR_002939, intron 2 of 8)"	"intron (NR_002939, intron 2 of 8)"	11157	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr16.3733108.-	chr16	3733108	3733109	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30168	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr2.240371699.-	chr2	240371699	240371700	-	0	NA	Intergenic	SVA_D|Other|Other	49056	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr16.30549924.-	chr16	30549924	30549925	-	0	NA	Intergenic	AluSq2|SINE|Alu	3730	NM_023931	65988	Hs.592032	NM_023931		ZNF747	-	zinc finger protein 747	protein-coding
chr6.65337787.-	chr6	65337787	65337788	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673524	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr2.159313478.+	chr2	159313478	159313479	+	0	NA	promoter-TSS (NM_003628)	promoter-TSS (NM_003628)	2	NM_001005476	8502	Hs.407580	NM_001005476	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
chr8.26241044.-	chr8	26241044	26241045	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-521	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chrX.9366129.+	chrX	9366129	9366130	+	0	NA	Intergenic	AluY|SINE|Alu	-65206	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr20.62197212.-	chr20	62197212	62197213	-	0	NA	"exon (NM_001037335, exon 9 of 20)"	"exon (NM_001037335, exon 9 of 20)"	-1895	NM_033405	85441	Hs.517180	NM_001037335	ENSG00000130589	HELZ2	PDIP-1|PRIC285	"helicase with zinc finger 2, transcriptional coactivator"	protein-coding
chr20.57575084.-	chr20	57575084	57575085	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7225	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr2.231536947.-	chr2	231536947	231536948	-	0	NA	Intergenic	AluY|SINE|Alu	-28297	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LOC151475	-	uncharacterized LOC151475	miscRNA
chr2.86777031.+	chr2	86777031	86777032	+	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	13589	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr2.161305729.-	chr2	161305729	161305730	-	0	NA	"intron (NM_016836, intron 1 of 13)"	SVA_B|Other|Other	41336	NR_039946	100616364		NR_039946		MIR4785	-	microRNA 4785	miscRNA
chr12.50785371.+	chr12	50785371	50785372	+	0	NA	"intron (NM_001145475, intron 1 of 7)"	AluSg|SINE|Alu	5034	NM_001145475	121006	Hs.133187	NM_001145475	ENSG00000185958	FAM186A	-	"family with sequence similarity 186, member A"	protein-coding
chr6.141000383.+	chr6	141000383	141000384	+	0	NA	Intergenic	AluY|SINE|Alu	-4568	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr2.38595149.+	chr2	38595149	38595150	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9283	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr19.2427750.-	chr19	2427750	2427751	-	0	NA	TTS (NM_032737)	TTS (NM_032737)	-125	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr2.191296192.+	chr2	191296192	191296193	+	0	NA	"intron (NM_017694, intron 2 of 7)"	SVA_D|Other|Other	23111	NM_017694	54842	Hs.744117	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
chr4.53600.+	chr4	53600	53601	+	0	NA	"intron (NM_182524, intron 1 of 5)"	CpG	323	NM_001039127	255403	Hs.744444	NM_001039127		ZNF718	-	zinc finger protein 718	protein-coding
chr14.97183957.+	chr14	97183957	97183958	+	0	NA	Intergenic	AluY|SINE|Alu	-79727	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr9.34116726.+	chr9	34116726	34116727	+	0	NA	"intron (NM_015397, intron 2 of 8)"	AluSx1|SINE|Alu	10045	NM_015397	25853	Hs.741270	NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
chr15.98871462.+	chr15	98871462	98871463	+	0	NA	Intergenic	AluY|SINE|Alu	186149	NM_182562	283777	Hs.668070	NM_182562	ENSG00000185087	FAM169B	-	"family with sequence similarity 169, member B"	protein-coding
chr13.28543074.+	chr13	28543074	28543075	+	0	NA	"exon (NM_001265, exon 1 of 3)"	"exon (NM_001265, exon 1 of 3)"	431	NM_001265	1045	Hs.740844	NM_001265		CDX2	CDX-3|CDX3	caudal type homeobox 2	protein-coding
chr19.34940117.+	chr19	34940117	34940118	+	0	NA	"intron (NM_005499, intron 8 of 16)"	AluSc|SINE|Alu	20849	NM_005499	10054	Hs.631580	NM_005499	ENSG00000126261	UBA2	ARX|SAE2	ubiquitin-like modifier activating enzyme 2	protein-coding
chr2.240980341.-	chr2	240980341	240980342	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2058	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr1.36611552.-	chr1	36611552	36611553	-	0	NA	"intron (NM_001270895, intron 1 of 4)"	AluY|SINE|Alu	-3563	NR_073098	27095	Hs.523131	NM_001270894	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
chr14.23517043.-	chr14	23517043	23517044	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5667	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr9.139775634.-	chr9	139775634	139775635	-	0	NA	Intergenic	AluSp|SINE|Alu	5331	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr19.3766801.-	chr19	3766801	3766802	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4136	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr12.8830985.-	chr12	8830985	8830986	-	0	NA	Intergenic	AluSp|SINE|Alu	15552	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr5.537412.-	chr5	537412	537413	-	0	NA	Intergenic	CpG	1415	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	miscRNA
chr4.48016941.+	chr4	48016941	48016942	+	0	NA	Intergenic	AluY|SINE|Alu	-1850	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr3.49297104.+	chr3	49297104	49297105	+	0	NA	Intergenic	AluY|SINE|Alu	-14449	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	miscRNA
chr11.119341512.-	chr11	119341512	119341513	-	0	NA	"intron (NR_034160, intron 3 of 3)"	"intron (NR_034160, intron 3 of 3)"	47266	NM_006288	7070	Hs.644697	NM_006288		THY1	CD90	Thy-1 cell surface antigen	protein-coding
chr10.135031518.+	chr10	135031518	135031519	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12260	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr7.118277723.+	chr7	118277723	118277724	+	0	NA	Intergenic	AluY|SINE|Alu	413011	NM_019644	56311	Hs.729340	NM_001077708	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
chr18.77627541.+	chr18	77627541	77627542	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3873	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chrX.144902986.-	chrX	144902986	144902987	-	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	-120	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr10.74000494.-	chr10	74000494	74000495	-	0	NA	Intergenic	AluJr4|SINE|Alu	23602	NR_045564	51008	Hs.500007	NM_001198798		ASCC1	ASC1p50|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
chr4.177147024.+	chr4	177147024	177147025	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30202	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr18.11959902.-	chr18	11959902	11959903	-	0	NA	Intergenic	SVA_D|Other|Other	21525	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr2.242500499.+	chr2	242500499	242500500	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1941	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr12.33352574.+	chr12	33352574	33352575	+	0	NA	Intergenic	LTR12|LTR|ERV1	240180	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr14.64976447.-	chr14	64976447	64976448	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5155	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chr19.35418163.-	chr19	35418163	35418164	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-356	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr10.134034492.+	chr10	134034492	134034493	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34078	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr17.67192584.-	chr17	67192584	67192585	-	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	-48372	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chr3.196325426.+	chr3	196325426	196325427	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29701	NM_001105573	200933	Hs.169815	NM_001105573	ENSG00000174013	FBXO45	Fbx45	F-box protein 45	protein-coding
chr13.104073401.-	chr13	104073401	104073402	-	0	NA	Intergenic	AluYa5|SINE|Alu	138553	NR_049840	100847092		NR_049840		MIR548AS	-	microRNA 548as	miscRNA
chr10.120946124.-	chr10	120946124	120946125	-	0	NA	Intergenic	AluY|SINE|Alu	7779	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chrX.132930115.+	chrX	132930115	132930116	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189558	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr3.46717851.-	chr3	46717851	46717852	-	0	NA	"exon (NM_001190707, exon 19 of 26)"	"exon (NM_001190707, exon 19 of 26)"	-1048	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr11.62551834.-	chr11	62551834	62551835	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3040	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr11.2051320.-	chr11	2051320	2051321	-	0	NA	Intergenic	Intergenic	32255	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr7.23053361.+	chr7	23053361	23053362	+	0	NA	"intron (NM_032581, intron 1 of 10)"	CpG	409	NM_032581	84668	Hs.85603	NM_032581	ENSG00000122591	FAM126A	DRCTNNB1A|HCC|HLD5|HYCC1	"family with sequence similarity 126, member A"	protein-coding
chr3.159944113.-	chr3	159944113	159944114	-	0	NA	"exon (NM_001168214, exon 1 of 1)"	"exon (NM_001168214, exon 1 of 1)"	-690	NM_001168214	401097	Hs.729755	NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
chr3.47744615.+	chr3	47744615	47744616	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78790	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr18.77627584.-	chr18	77627584	77627585	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3916	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr10.95605038.+	chr10	95605038	95605039	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-48692	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr7.148597582.+	chr7	148597582	148597583	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16141	NM_001203247	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr3.164119732.-	chr3	164119732	164119733	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676551	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr22.17719094.-	chr22	17719094	17719095	-	0	NA	Intergenic	AluSg|SINE|Alu	28315	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr6.160985700.-	chr6	160985700	160985701	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53544	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr18.55445716.+	chr18	55445716	55445717	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24611	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr19.15037579.+	chr19	15037579	15037580	+	0	NA	Intergenic	AluSp|SINE|Alu	-14722	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr20.46825993.-	chr20	46825993	46825994	-	0	NA	Intergenic	LTR16C|LTR|ERVL	162661	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr7.26294392.-	chr7	26294392	26294393	-	0	NA	Intergenic	AluSx1|SINE|Alu	37123	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr8.98771877.+	chr8	98771877	98771878	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15932	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr1.218505148.-	chr1	218505148	218505149	-	0	NA	"3' UTR (NM_016052, exon 5 of 5)"	"3' UTR (NM_016052, exon 5 of 5)"	13528	NM_003238	7042	Hs.133379	NM_001135599	ENSG00000092969	TGFB2	LDS4|TGF-beta2	"transforming growth factor, beta 2"	protein-coding
chr2.101214333.+	chr2	101214333	101214334	+	0	NA	Intergenic	AluY|SINE|Alu	34915	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr14.83280569.-	chr14	83280569	83280570	-	0	NA	Intergenic	SVA_D|Other|Other	1280364	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr22.50580023.+	chr22	50580023	50580024	+	0	NA	"intron (NM_001164104, intron 15 of 25)"	AluJb|SINE|Alu	-5461	NM_001164106	54456	Hs.62880	NM_001164104	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	"Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)"	protein-coding
chr2.20424090.+	chr2	20424090	20424091	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	837	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr10.17622241.-	chr10	17622241	17622242	-	0	NA	Intergenic	AluY|SINE|Alu	-37132	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr15.56465892.-	chr15	56465892	56465893	-	0	NA	"intron (NM_022841, intron 2 of 8)"	AluSq|SINE|Alu	-69591	NM_022841	64864	Hs.282855	NM_022841	ENSG00000181827	RFX7	RFXDC2	"regulatory factor X, 7"	protein-coding
chr6.15189297.+	chr6	15189297	15189298	+	0	NA	Intergenic	SVA_F|Other|Other	-56909	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr11.69189593.+	chr11	69189593	69189594	+	0	NA	Intergenic	Intergenic	127971	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr19.5681029.+	chr19	5681029	5681030	+	0	NA	promoter-TSS (NM_205767)	promoter-TSS (NM_205767)	-118	NM_205767	125988	Hs.356626	NM_205767	ENSG00000174917	C19orf70	P117|QIL1	chromosome 19 open reading frame 70	protein-coding
chr1.227982853.+	chr1	227982853	227982854	+	0	NA	Intergenic	Intergenic	-20565	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr6.70692613.-	chr6	70692613	70692614	-	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	-116165	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr8.142397059.-	chr8	142397059	142397060	-	0	NA	Intergenic	Intergenic	19694	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr5.75799114.+	chr5	75799114	75799115	+	0	NA	"intron (NM_006633, intron 2 of 35)"	AluSq|SINE|Alu	99965	NM_006633	10788	Hs.291030	NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
chr3.36494769.+	chr3	36494769	36494770	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72672	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr19.47364597.-	chr19	47364597	47364598	-	0	NA	Intergenic	Intergenic	10394	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr6.122006959.-	chr6	122006959	122006960	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-250214	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr3.45348418.-	chr3	45348418	45348419	-	0	NA	Intergenic	LTR12C|LTR|ERV1	80604	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr17.38532187.-	chr17	38532187	38532188	-	0	NA	Intergenic	LTR12C|LTR|ERV1	11242	NM_152219	125111	Hs.444663	NM_152219		GJD3	CX31.9|Cx30.2|GJA11|GJC1	"gap junction protein, delta 3, 31.9kDa"	protein-coding
chr7.33176767.-	chr7	33176767	33176768	-	0	NA	"intron (NM_014451, intron 1 of 20)"	MER52D|LTR|ERV1	-7615	NM_001033605	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr12.75694230.-	chr12	75694230	75694231	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29606	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr6.149638253.+	chr6	149638253	149638254	+	0	NA	Intergenic	CpG	-1183	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr2.86625384.+	chr2	86625384	86625385	+	0	NA	Intergenic	Intergenic	-42887	NM_018433	55818	Hs.557425	NM_001146688	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine (K)-specific demethylase 3A	protein-coding
chr13.31307196.+	chr13	31307196	31307197	+	0	NA	"intron (NM_001204406, intron 1 of 5)"	AluY|SINE|Alu	-2449	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
chr4.44450916.-	chr4	44450916	44450917	-	0	NA	promoter-TSS (NM_198353)	promoter-TSS (NM_198353)	92	NM_198353	386617	Hs.479644	NM_198353	ENSG00000183783	KCTD8	-	potassium channel tetramerisation domain containing 8	protein-coding
chr8.42949368.+	chr8	42949368	42949369	+	0	NA	"intron (NM_032237, intron 1 of 4)"	AluSx1|SINE|Alu	711	NM_032237	84197	Hs.491646	NM_032237	ENSG00000185900	SGK196	-	protein kinase-like protein SgK196	protein-coding
chr20.31565641.+	chr20	31565641	31565642	+	0	NA	Intergenic	Intergenic	26598	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr20.3879968.+	chr20	3879968	3879969	+	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	9505	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr16.67519971.+	chr16	67519971	67519972	+	0	NA	Intergenic	AluY|SINE|Alu	-2255	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr13.24099547.-	chr13	24099547	24099548	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	44962	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr19.34856428.-	chr19	34856428	34856429	-	0	NA	"intron (NM_000175, intron 1 of 17)"	CpG	-396	NM_000175	2821	Hs.466471	NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
chr21.32687764.+	chr21	32687764	32687765	+	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	243526	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr8.86574473.+	chr8	86574473	86574474	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	269	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr6.90121986.-	chr6	90121986	90121987	-	0	NA	promoter-TSS (NM_021244)	promoter-TSS (NM_021244)	-9	NM_021244	58528	Hs.31712	NM_021244	ENSG00000025039	RRAGD	RAGD|bA11D8.2.1	Ras-related GTP binding D	protein-coding
chr13.21644938.+	chr13	21644938	21644939	+	0	NA	Intergenic	AluSx|SINE|Alu	-9216	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr17.5732885.+	chr17	5732885	5732886	+	0	NA	"intron (NR_040000, intron 1 of 3)"	AluSx1|SINE|Alu	57331	NR_040000	339166	Hs.736088	NR_040000	ENSG00000179314	LOC339166	-	uncharacterized LOC339166	miscRNA
chr5.21341903.+	chr5	21341903	21341904	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-117686	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr17.41185267.+	chr17	41185267	41185268	+	0	NA	Intergenic	AluY|SINE|Alu	8009	NM_005440	8153	Hs.603111	NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
chr5.133503215.-	chr5	133503215	133503216	-	0	NA	"intron (NM_170679, intron 2 of 5)"	MER2|DNA|TcMar-Tigger	-9509	NM_006930	6500	Hs.171626	NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
chr2.128432611.+	chr2	128432611	128432612	+	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	153	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr2.163473798.+	chr2	163473798	163473799	+	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	221459	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chr17.80376638.+	chr17	80376638	80376639	+	0	NA	promoter-TSS (NM_024648)	promoter-TSS (NM_024648)	-125	NM_175902	79701	Hs.187505	NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
chr9.136941012.+	chr9	136941012	136941013	+	0	NA	Intergenic	SVA_B|Other|Other	-7871	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr12.113494349.+	chr12	113494349	113494350	+	0	NA	Intergenic	Intergenic	-1313	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr15.75182442.-	chr15	75182442	75182443	-	0	NA	promoter-TSS (NM_002435)	promoter-TSS (NM_002435)	-32	NM_002435	4351	Hs.75694	NM_002435	ENSG00000178802	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
chr6.170055421.-	chr6	170055421	170055422	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46738	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr3.189144188.+	chr3	189144188	189144189	+	0	NA	Intergenic	AluSx|SINE|Alu	-185805	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	miscRNA
chr13.45945079.+	chr13	45945079	45945080	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29599	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr2.47660757.+	chr2	47660757	47660758	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30551	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr11.114127794.-	chr11	114127794	114127795	-	0	NA	Intergenic	Intergenic	38741	NM_006169	4837	Hs.503911	NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
chr19.11043353.+	chr19	11043353	11043354	+	0	NA	Intergenic	AluSg4|SINE|Alu	3929	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr1.108113226.+	chr1	108113226	108113227	+	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	117900	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr7.667406.+	chr7	667406	667407	+	0	NA	"intron (NM_002735, intron 4 of 10)"	"intron (NM_002735, intron 4 of 10)"	84755	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr19.58932938.+	chr19	58932938	58932939	+	0	NA	Intergenic	AluSg|SINE|Alu	12875	NM_173548	201514	Hs.439551	NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
chr2.113642140.-	chr2	113642140	113642141	-	0	NA	Intergenic	AluJb|SINE|Alu	28408	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr13.47735062.+	chr13	47735062	47735063	+	0	NA	Intergenic	LTR12|LTR|ERV1	-263851	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr19.4981413.-	chr19	4981413	4981414	-	0	NA	"intron (NM_015015, intron 1 of 22)"	"intron (NM_015015, intron 1 of 22)"	-12289	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr1.151105180.+	chr1	151105180	151105181	+	0	NA	"exon (NM_030913, exon 19 of 19)"	"exon (NM_030913, exon 19 of 19)"	13960	NM_001178061	10500	Hs.516316	NM_001178061	ENSG00000143434	SEMA6C	SEMAY|m-SemaY|m-SemaY2	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C"	protein-coding
chr7.77452593.+	chr7	77452593	77452594	+	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	-16854	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr4.3573879.+	chr4	3573879	3573880	+	0	NA	Intergenic	Intergenic	-4717	NR_040045	285492	Hs.145563	NM_173661		FLJ35424	-	uncharacterized FLJ35424	miscRNA
chr16.33293932.+	chr16	33293932	33293933	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4770	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr12.132372583.-	chr12	132372583	132372584	-	0	NA	Intergenic	AluSx|SINE|Alu	6696	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr13.21872270.-	chr13	21872270	21872271	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-6	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr2.224599753.-	chr2	224599753	224599754	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102566	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr14.105242469.-	chr14	105242469	105242470	-	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	-17469	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr9.35846364.+	chr9	35846364	35846365	+	0	NA	"exon (NM_001042590, exon 8 of 13)"	"exon (NM_001042590, exon 8 of 13)"	-13907	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr6.142795196.-	chr6	142795196	142795197	-	0	NA	Intergenic	AluSc|SINE|Alu	-163777	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr22.44281152.-	chr22	44281152	44281153	-	0	NA	"intron (NM_138814, intron 6 of 8)"	"intron (NM_138814, intron 6 of 8)"	-6741	NM_001177675	150379	Hs.248086	NM_001177675	ENSG00000100341	PNPLA5	GS2L|dJ388M5|dJ388M5.4	patatin-like phospholipase domain containing 5	protein-coding
chrX.135963976.-	chrX	135963976	135963977	-	0	NA	Intergenic	AluSx|SINE|Alu	1037	NM_001164803	27316	Hs.710162	NM_001164803	ENSG00000147274	RBMX	HNRPG|RBMXP1|RBMXRT|RNMX|hnRNP-G	"RNA binding motif protein, X-linked"	protein-coding
chr8.2947604.-	chr8	2947604	2947605	-	0	NA	"intron (NM_033225, intron 48 of 69)"	AluY|SINE|Alu	-954446	NM_003970	9172	Hs.443683	NM_003970	ENSG00000036448	MYOM2	TTNAP	myomesin 2	protein-coding
chr7.26257610.+	chr7	26257610	26257611	+	0	NA	Intergenic	AluY|SINE|Alu	16286	NM_016587	11335	Hs.381189	NM_007276	ENSG00000122565	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma	chromobox homolog 3	protein-coding
chr5.1386097.+	chr5	1386097	1386098	+	0	NA	Intergenic	CpG	-41095	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1-like	protein-coding
chr16.84670301.-	chr16	84670301	84670302	-	0	NA	Intergenic	AluY|SINE|Alu	11830	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr2.10198516.+	chr2	10198516	10198517	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14144	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr12.118079886.-	chr12	118079886	118079887	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280279	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr7.936452.-	chr7	936452	936453	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20261	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr6.6954738.+	chr6	6954738	6954739	+	0	NA	Intergenic	AluSp|SINE|Alu	-153092	NM_001168344	6239	Hs.298248	NM_001003698	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
chr13.47509467.+	chr13	47509467	47509468	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-38256	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr19.10041259.+	chr19	10041259	10041260	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5811	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr12.111714725.-	chr12	111714725	111714726	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92200	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr7.5396356.-	chr7	5396356	5396357	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	-66821	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr2.20424062.+	chr2	20424062	20424063	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	865	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr3.112930982.+	chr3	112930982	112930983	+	0	NA	promoter-TSS (NM_033254)	promoter-TSS (NM_033254)	-393	NM_033254	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	"BOC cell adhesion associated, oncogene regulated"	protein-coding
chr6.36517471.-	chr6	36517471	36517472	-	0	NA	Intergenic	AluY|SINE|Alu	2224	NM_007271	11329	Hs.409578	NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
chr19.58310317.-	chr19	58310317	58310318	-	0	NA	Intergenic	AluY|SINE|Alu	-15964	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr12.75694195.-	chr12	75694195	75694196	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29641	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr16.1968407.-	chr16	1968407	1968408	-	0	NA	promoter-TSS (NM_001009606)	promoter-TSS (NM_001009606)	176	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr16.88772890.+	chr16	88772890	88772891	+	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	-1	NM_001012759	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr22.45064405.-	chr22	45064405	45064406	-	0	NA	promoter-TSS (NM_001017529)	promoter-TSS (NM_001017529)	22	NM_001017528	55615	Hs.102336	NM_001017528	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5 (renal)	protein-coding
chr16.15528773.+	chr16	15528773	15528774	+	0	NA	"intron (NM_033201, intron 1 of 5)"	CpG	448	NM_033201	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
chr13.49426623.+	chr13	49426623	49426624	+	0	NA	Intergenic	AluSp|SINE|Alu	-123425	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr2.240750901.-	chr2	240750901	240750902	-	0	NA	Intergenic	Intergenic	-66347	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chrX.103014782.-	chrX	103014782	103014783	-	0	NA	Intergenic	AluY|SINE|Alu	16657	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr14.102109491.-	chr14	102109491	102109492	-	0	NA	Intergenic	AluY|SINE|Alu	-81803	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr7.100271686.-	chr7	100271686	100271687	-	0	NA	"intron (NM_005273, intron 1 of 9)"	CpG	-323	NM_005273	2783	Hs.185172	NM_005273	ENSG00000172354	GNB2	-	"guanine nucleotide binding protein (G protein), beta polypeptide 2"	protein-coding
chr3.174240453.+	chr3	174240453	174240454	+	0	NA	Intergenic	AluY|SINE|Alu	-336658	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr22.34378896.-	chr22	34378896	34378897	-	0	NA	Intergenic	AluSx1|SINE|Alu	62480	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr6.13335715.-	chr6	13335715	13335716	-	0	NA	Intergenic	AluYa5|SINE|Alu	6928	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr22.43238167.+	chr22	43238167	43238168	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15241	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr15.91370831.-	chr15	91370831	91370832	-	0	NA	Intergenic	AluSz|SINE|Alu	41054	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr12.124155635.-	chr12	124155635	124155636	-	0	NA	promoter-TSS (NM_001143850)	promoter-TSS (NM_001143850)	25	NM_001143850	79867	Hs.167165	NM_001143850	ENSG00000168778	TCTN2	C12orf38|MKS8|TECT2	tectonic family member 2	protein-coding
chr1.39729540.-	chr1	39729540	39729541	-	0	NA	"intron (NM_012090, intron 7 of 94)"	AluY|SINE|Alu	145636	NM_015038	643314	Hs.658760	NM_015038	ENSG00000255103	KIAA0754	-	KIAA0754	protein-coding
chr2.232277187.+	chr2	232277187	232277188	+	0	NA	Intergenic	Intergenic	16852	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chrX.70476381.+	chrX	70476381	70476382	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluJb|SINE|Alu	-1334	NM_001171162	9203	Hs.522684	NM_001171162	ENSG00000147130	ZMYM3	DXS6673E|MYM|XFIM|ZNF198L2|ZNF261	"zinc finger, MYM-type 3"	protein-coding
chr2.241535814.+	chr2	241535814	241535815	+	0	NA	"exon (NM_023083, exon 8 of 12)"	"exon (NM_023083, exon 8 of 12)"	-9011	NM_001195382	2859	Hs.112218	NM_001195381	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
chr11.67336031.-	chr11	67336031	67336032	-	0	NA	Intergenic	AluSg|SINE|Alu	15035	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr11.47914416.+	chr11	47914416	47914417	+	0	NA	Intergenic	SVA_B|Other|Other	-44359	NM_015231	23279	Hs.744107	NM_015231	ENSG00000030066	NUP160	-	nucleoporin 160kDa	protein-coding
chr21.11107121.-	chr21	11107121	11107122	-	0	NA	Intergenic	CpG	8184	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr1.236227875.-	chr1	236227875	236227876	-	0	NA	"intron (NM_002508, intron 1 of 19)"	CpG	-606	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr20.17687847.+	chr20	17687847	17687848	+	0	NA	"intron (NM_001014977, intron 1 of 2)"	AluY|SINE|Alu	7254	NM_001014977	140836	Hs.115366	NM_001014977	ENSG00000125888	BANF2	BAF-L|BAF2|BAFL|C20orf179	barrier to autointegration factor 2	protein-coding
chr14.76127589.-	chr14	76127589	76127590	-	0	NA	promoter-TSS (NM_015072)	promoter-TSS (NM_015072)	-38	NM_015072	23093	Hs.709609	NM_015072	ENSG00000119685	TTLL5	KIAA0998|STAMP	"tubulin tyrosine ligase-like family, member 5"	protein-coding
chr19.14156316.-	chr19	14156316	14156317	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13655	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr12.100804232.+	chr12	100804232	100804233	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53375	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr15.78859513.+	chr15	78859513	78859514	+	0	NA	"intron (NM_000745, intron 1 of 5)"	AluY|SINE|Alu	1651	NM_000745	1138	Hs.719767	NM_000745	ENSG00000169684	CHRNA5	LNCR2	"cholinergic receptor, nicotinic, alpha 5 (neuronal)"	protein-coding
chr15.81071434.+	chr15	81071434	81071435	+	0	NA	promoter-TSS (NM_018689)	promoter-TSS (NM_018689)	-278	NM_018689	57214	Hs.459088	NM_018689	ENSG00000103888	KIAA1199	CCSP1|TMEM2L	KIAA1199	protein-coding
chr7.130728749.-	chr7	130728749	130728750	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSp|SINE|Alu	-63040	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr5.136893097.-	chr5	136893097	136893098	-	0	NA	Intergenic	AluY|SINE|Alu	58079	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1"	protein-coding
chr20.61021235.-	chr20	61021235	61021236	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18606	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr15.26543476.-	chr15	26543476	26543477	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-182516	NR_038852	503519	Hs.371380	NR_038851	ENSG00000259150	LOC503519	-	uncharacterized LOC503519	miscRNA
chr7.532123.+	chr7	532123	532124	+	0	NA	Intergenic	Intergenic	27358	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr18.44929239.-	chr18	44929239	44929240	-	0	NA	Intergenic	Intergenic	226494	NM_016097	51124	Hs.130917	NM_016097	ENSG00000134049	IER3IP1	MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
chr17.1226127.+	chr17	1226127	1226128	+	0	NA	Intergenic	AluSx|SINE|Alu	43170	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr2.242447179.+	chr2	242447179	242447180	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	596	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr4.48016943.-	chr4	48016943	48016944	-	0	NA	Intergenic	AluY|SINE|Alu	1848	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr20.48080606.+	chr20	48080606	48080607	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18575	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr2.37193742.-	chr2	37193742	37193743	-	0	NA	promoter-TSS (NM_003162)	promoter-TSS (NM_003162)	127	NM_003162	6801	Hs.127486	NM_003162		STRN	SG2NA	"striatin, calmodulin binding protein"	protein-coding
chr1.217314010.+	chr1	217314010	217314011	+	0	NA	Intergenic	Intergenic	-2913	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr17.40316778.+	chr17	40316778	40316779	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9716	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr10.6622001.-	chr10	6622001	6622002	-	0	NA	promoter-TSS (NR_036502)	promoter-TSS (NR_036502)	-253	NM_006257	5588	Hs.498570	NM_001242413	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	"protein kinase C, theta"	protein-coding
chr7.138666226.+	chr7	138666226	138666227	+	0	NA	promoter-TSS (NM_020910)	promoter-TSS (NM_020910)	-162	NM_001164665	57670	Hs.605380	NM_001164665	ENSG00000122778	KIAA1549	-	KIAA1549	protein-coding
chr12.112407435.-	chr12	112407435	112407436	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43588	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr22.22550498.+	chr22	22550498	22550499	+	0	NA	Intergenic	Intergenic	-48702	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr10.8150511.-	chr10	8150511	8150512	-	0	NA	Intergenic	AluY|SINE|Alu	-53844	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr8.141667599.-	chr8	141667599	141667600	-	0	NA	TTS (NM_005607)	TTS (NM_005607)	21953	NM_001164623	27161	Hs.743313	NM_001164623	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute RISC catalytic component 2	protein-coding
chr20.45991177.+	chr20	45991177	45991178	+	0	NA	Intergenic	AluSz|SINE|Alu	-5703	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr11.12841282.+	chr11	12841282	12841283	+	0	NA	"intron (NM_021961, intron 3 of 12)"	AluY|SINE|Alu	145313	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chr16.30960884.-	chr16	30960884	30960885	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-479	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr6.74427445.+	chr6	74427445	74427446	+	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	21931	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr10.94122252.+	chr10	94122252	94122253	+	0	NA	Intergenic	AluSg|SINE|Alu	-56166	NR_038243	100507674	Hs.742186	NR_038243		MARK2P9	-	MAP/microtubule affinity-regulating kinase 2 pseudogene 9	pseudo
chr12.112407399.-	chr12	112407399	112407400	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43624	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr8.54998368.-	chr8	54998368	54998369	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16209	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr5.2391316.+	chr5	2391316	2391317	+	0	NA	Intergenic	Intergenic	360453	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr18.55790673.+	chr18	55790673	55790674	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25892	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr12.45035687.-	chr12	45035687	45035688	-	0	NA	"intron (NM_001145108, intron 13 of 19)"	AluSx|SINE|Alu	-233757	NM_001145109	4753	Hs.505326	NM_001145107	ENSG00000184613	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
chr15.66993601.+	chr15	66993601	66993602	+	0	NA	Intergenic	CpG	-1073	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr4.177147019.-	chr4	177147019	177147020	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30197	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr5.490656.-	chr5	490656	490657	-	0	NA	"intron (NM_004174, intron 2 of 16)"	"intron (NM_004174, intron 2 of 16)"	17576	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	miscRNA
chr17.65843553.+	chr17	65843553	65843554	+	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	21773	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr7.532139.+	chr7	532139	532140	+	0	NA	Intergenic	Intergenic	27342	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr8.142427883.-	chr8	142427883	142427884	-	0	NA	Intergenic	CpG	4124	NM_007079	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr16.632254.-	chr16	632254	632255	-	0	NA	"exon (NM_004204, exon 10 of 11)"	"exon (NM_004204, exon 10 of 11)"	7103	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr2.106682233.-	chr2	106682233	106682234	-	0	NA	"exon (NM_032411, exon 1 of 4)"	"exon (NM_032411, exon 1 of 4)"	-120	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr2.102559039.+	chr2	102559039	102559040	+	0	NA	Intergenic	AluY|SINE|Alu	-49267	NM_004633	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	"interleukin 1 receptor, type II"	protein-coding
chr10.120841997.-	chr10	120841997	120841998	-	0	NA	Intergenic	AluSx|SINE|Alu	1663	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr2.24809074.-	chr2	24809074	24809075	-	0	NA	"intron (NM_003743, intron 1 of 20)"	AluSx1|SINE|Alu	-1728	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
chr9.137200948.-	chr9	137200948	137200949	-	0	NA	Intergenic	Intergenic	17368	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr6.74427476.-	chr6	74427476	74427477	-	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	-21962	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr7.36403812.-	chr7	36403812	36403813	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2970	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr6.168352125.+	chr6	168352125	168352126	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25494	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr7.5396265.+	chr7	5396265	5396266	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66912	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr8.1321533.-	chr8	1321533	1321534	-	0	NA	Intergenic	CpG	70706	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr22.23523336.+	chr22	23523336	23523337	+	0	NA	"exon (NM_021574, exon 1 of 22)"	"exon (NM_021574, exon 1 of 22)"	784	NM_004327	613	Hs.715409	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	breakpoint cluster region	protein-coding
chr7.100816081.+	chr7	100816081	100816082	+	0	NA	"intron (NM_198571, intron 3 of 3)"	CpG	-7229	NM_003378	7425	Hs.587325	NM_003378	ENSG00000128564	VGF	-	VGF nerve growth factor inducible	protein-coding
chr17.76488489.+	chr17	76488489	76488490	+	0	NA	"intron (NM_173628, intron 42 of 80)"	"intron (NM_173628, intron 42 of 80)"	7497	NR_102401	100996295	Hs.638630	XM_003846285		LOC100996295	-	uncharacterized LOC100996295	miscRNA
chr11.67351082.+	chr11	67351082	67351083	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	16	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr12.132643360.+	chr12	132643360	132643361	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	14367	NM_024078	79050	Hs.558536	NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog (S. cerevisiae)	protein-coding
chr3.13876373.-	chr3	13876373	13876374	-	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	-45245	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr2.204121235.+	chr2	204121235	204121236	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18071	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr7.6454053.-	chr7	6454053	6454054	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	-33590	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr21.46408769.+	chr21	46408769	46408770	+	0	NA	Intergenic	Intergenic	5232	NR_033840	727699	Hs.397403	NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	miscRNA
chr12.65049570.-	chr12	65049570	65049571	-	0	NA	"intron (NR_040718, intron 1 of 3)"	AluSx1|SINE|Alu	33185	NR_037515	100500856		NR_037515		MIR548Z	-	microRNA 548z	miscRNA
chr20.60392352.-	chr20	60392352	60392353	-	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	-136366	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr2.95873289.+	chr2	95873289	95873290	+	0	NA	Intergenic	CpG	42106	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr17.4708663.+	chr17	4708663	4708664	+	0	NA	Intergenic	AluSp|SINE|Alu	-1733	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr13.59346900.-	chr13	59346900	59346901	-	0	NA	Intergenic	AluY|SINE|Alu	-1141111	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr20.21256202.+	chr20	21256202	21256203	+	0	NA	Intergenic	AluY|SINE|Alu	-27740	NM_012255	22803	Hs.255932	NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
chr13.77954553.+	chr13	77954553	77954554	+	0	NA	Intergenic	AluSc|SINE|Alu	-53376	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr18.55790707.+	chr18	55790707	55790708	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25858	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chrX.18361928.-	chrX	18361928	18361929	-	0	NA	"intron (NR_033717, intron 1 of 15)"	"intron (NR_033717, intron 1 of 15)"	-10916	NM_006089	10389	Hs.495774	NM_006089	ENSG00000102098	SCML2	-	sex comb on midleg-like 2 (Drosophila)	protein-coding
chr14.23438202.-	chr14	23438202	23438203	-	0	NA	Intergenic	AluSx1|SINE|Alu	-8230	NM_198086	84962	Hs.655832	NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
chr7.821297.-	chr7	821297	821298	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33897	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr14.37124369.-	chr14	37124369	37124370	-	0	NA	Intergenic	Intergenic	2404	NM_006194	5083	Hs.609574	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
chr14.55349951.-	chr14	55349951	55349952	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5040	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr11.69452000.+	chr11	69452000	69452001	+	0	NA	Intergenic	CpG	-3873	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr17.21027138.+	chr17	21027138	21027139	+	0	NA	Intergenic	AluSc|SINE|Alu	-3103	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr11.133788097.+	chr11	133788097	133788098	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16462	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr9.83293403.+	chr9	83293403	83293404	+	0	NA	Intergenic	AluSc|SINE|Alu	1010193	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr9.12352922.+	chr9	12352922	12352923	+	0	NA	Intergenic	AluY|SINE|Alu	-340464	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr3.42642385.+	chr3	42642385	42642386	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	187	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr17.42869158.-	chr17	42869158	42869159	-	0	NA	Intergenic	AluY|SINE|Alu	-32590	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr10.31091727.+	chr10	31091727	31091728	+	0	NA	Intergenic	AluY|SINE|Alu	-173080	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
chr5.52316810.-	chr5	52316810	52316811	-	0	NA	"intron (NR_073107, intron 1 of 28)"	AluSx|SINE|Alu	-31654	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	"integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)"	protein-coding
chr7.6843794.+	chr7	6843794	6843795	+	0	NA	"intron (NM_198097, intron 12 of 14)"	AluSz|SINE|Alu	22132	NM_198097	221960	Hs.567779	NM_198097		CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
chr6.79577354.+	chr6	79577354	79577355	+	0	NA	promoter-TSS (NM_001010844)	promoter-TSS (NM_001010844)	93	NM_001010844	134728	Hs.656212	NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
chr10.96280668.+	chr10	96280668	96280669	+	0	NA	"intron (NM_015188, intron 9 of 12)"	AluY|SINE|Alu	-24906	NM_018063	3070	Hs.655830	NM_018063	ENSG00000119969	HELLS	LSH|PASG|SMARCA6	"helicase, lymphoid-specific"	protein-coding
chr9.140474131.+	chr9	140474131	140474132	+	0	NA	promoter-TSS (NM_138778)	promoter-TSS (NM_138778)	-744	NM_138778	92715	Hs.292570	NM_138778	ENSG00000148399	WDR85	C9orf112|RP11-48C7.3|RRT2	WD repeat domain 85	protein-coding
chr2.232395144.-	chr2	232395144	232395145	-	0	NA	promoter-TSS (NM_006056)	promoter-TSS (NM_006056)	-38	NM_006056	10316	Hs.471619	NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
chr22.19929326.-	chr22	19929326	19929327	-	0	NA	promoter-TSS (NM_000754)	promoter-TSS (NM_000754)	-33	NM_006440	10587	Hs.443430	NM_006440	ENSG00000184470	TXNRD2	SELZ|TR|TR-BETA|TR3|TRXR2	thioredoxin reductase 2	protein-coding
chr9.90567870.+	chr9	90567870	90567871	+	0	NA	Intergenic	AluSc|SINE|Alu	21825	NM_001039803	23552	Hs.522274	NM_001039803	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin-dependent kinase 20	protein-coding
chr14.20811029.+	chr14	20811029	20811030	+	0	NA	promoter-TSS (NM_005484)	promoter-TSS (NM_005484)	541	NR_002312	85495	Hs.613102	NR_002312	ENSG00000252678	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	miscRNA
chr12.66636860.+	chr12	66636860	66636861	+	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	53882	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr9.114393815.+	chr9	114393815	114393816	+	0	NA	"non-coding (NR_037148, exon 1 of 5)"	"non-coding (NR_037148, exon 1 of 5)"	183	NM_004125	552891	Hs.534196	NM_004125	ENSG00000059769	DNAJC25-GNG10	-	DNAJC25-GNG10 readthrough	protein-coding
chr16.89642103.-	chr16	89642103	89642104	-	0	NA	promoter-TSS (NM_153636)	promoter-TSS (NM_153636)	73	NM_014427	27132	Hs.461775	NM_014427	ENSG00000178773	CPNE7	-	copine VII	protein-coding
chr19.18180446.-	chr19	18180446	18180447	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17251	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr6.170055454.+	chr6	170055454	170055455	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46705	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr7.56183716.+	chr7	56183716	56183717	+	0	NA	"exon (NM_001145712, exon 1 of 2)"	"exon (NM_001145712, exon 1 of 2)"	374	NM_001145712	389493	Hs.177948	NM_001145712	ENSG00000185290	NUPR1L	-	"nuclear protein, transcriptional regulator, 1-like"	protein-coding
chr2.3331101.+	chr2	3331101	3331102	+	0	NA	"intron (NM_003310, intron 3 of 8)"	AluSz|SINE|Alu	50552	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr18.9386381.-	chr18	9386381	9386382	-	0	NA	"intron (NM_020648, intron 3 of 4)"	AluSx1|SINE|Alu	-51616	NM_020648	57045	Hs.514685	NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation homolog 1 (Drosophila)	protein-coding
chr5.64597673.-	chr5	64597673	64597674	-	0	NA	"intron (NM_197941, intron 9 of 24)"	AluSx|SINE|Alu	-180031	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	"ADAM metallopeptidase with thrombospondin type 1 motif, 6"	protein-coding
chr5.76691193.+	chr5	76691193	76691194	+	0	NA	"intron (NM_001029853, intron 9 of 20)"	AluY|SINE|Alu	97139	NM_018268	55255	Hs.482573	NM_018268		WDR41	-	WD repeat domain 41	protein-coding
chrX.112187624.+	chrX	112187624	112187625	+	0	NA	Intergenic	AluY|SINE|Alu	-103581	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr8.38894855.+	chr8	38894855	38894856	+	0	NA	"intron (NR_027638, intron 11 of 20)"	AluYc3|SINE|Alu	40350	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
chr9.135947022.+	chr9	135947022	135947023	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9657	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr6.149638372.-	chr6	149638372	149638373	-	0	NA	Intergenic	CpG	1064	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr8.144503710.+	chr8	144503710	144503711	+	0	NA	Intergenic	CpG	8892	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr9.138662464.+	chr9	138662464	138662465	+	0	NA	"intron (NM_001272003, intron 16 of 30)"	"intron (NM_001272003, intron 16 of 30)"	68433	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr2.204121233.+	chr2	204121233	204121234	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18069	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr5.42921827.-	chr5	42921827	42921828	-	0	NA	Intergenic	AluY|SINE|Alu	-97086	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	miscRNA
chr9.21968305.+	chr9	21968305	21968306	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1167	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr1.153574150.+	chr1	153574150	153574151	+	0	NA	Intergenic	AluY|SINE|Alu	11364	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr1.68960595.+	chr1	68960595	68960596	+	0	NA	"intron (NM_017779, intron 1 of 10)"	AluSp|SINE|Alu	2204	NM_017779	55635	Hs.445098	NM_001114120	ENSG00000024526	DEPDC1	DEP.8|DEPDC1-V2|DEPDC1A|SDP35	DEP domain containing 1	protein-coding
chr20.61449276.-	chr20	61449276	61449277	-	0	NA	"intron (NM_001853, intron 2 of 31)"	"intron (NM_001853, intron 2 of 31)"	-862	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chr9.136951715.+	chr9	136951715	136951716	+	0	NA	Intergenic	AluY|SINE|Alu	-18574	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr2.74880324.-	chr2	74880324	74880325	-	0	NA	Intergenic	AluYg6|SINE|Alu	1031	NM_004263	10505	Hs.25887	NM_001271661	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F"	protein-coding
chr10.28821799.-	chr10	28821799	28821800	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-377	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr1.6051434.-	chr1	6051434	6051435	-	0	NA	promoter-TSS (NM_001199861)	promoter-TSS (NM_001199861)	924	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr17.3109961.-	chr17	3109961	3109962	-	0	NA	Intergenic	AluSc8|SINE|Alu	8954	NM_014565	8383	Hs.532688	NM_014565	ENSG00000172146	OR1A1	OR17-7	"olfactory receptor, family 1, subfamily A, member 1"	protein-coding
chr19.6337904.-	chr19	6337904	6337905	-	0	NA	Intergenic	AluY|SINE|Alu	4264	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr4.43368664.+	chr4	43368664	43368665	+	0	NA	Intergenic	AluY|SINE|Alu	473381	NM_001080476	389207	Hs.162559	NM_001080476	ENSG00000215203	GRXCR1	DFNB25	"glutaredoxin, cysteine rich 1"	protein-coding
chr5.176091349.+	chr5	176091349	176091350	+	0	NA	Intergenic	L1MC|LINE|L1	16961	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr3.66551558.-	chr3	66551558	66551559	-	0	NA	promoter-TSS (NM_015541)	promoter-TSS (NM_015541)	713	NM_015541	26018	Hs.518055	NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding
chr10.133203430.-	chr10	133203430	133203431	-	0	NA	Intergenic	Intergenic	93446	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr1.163468383.-	chr1	163468383	163468384	-	0	NA	Intergenic	SVA_A|Other|Other	-176660	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr13.82029619.-	chr13	82029619	82029620	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114533	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr2.233477520.+	chr2	233477520	233477521	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6753	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr9.111476101.-	chr9	111476101	111476102	-	0	NA	Intergenic	L1PA7|LINE|L1	-142174	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr2.43707914.+	chr2	43707914	43707915	+	0	NA	"intron (NM_022065, intron 26 of 37)"	AluSx3|SINE|Alu	115199	NM_001083953	63892	Hs.369592	NM_001083953	ENSG00000115970	THADA	GITA	thyroid adenoma associated	protein-coding
chr6.114067435.-	chr6	114067435	114067436	-	0	NA	Intergenic	AluY|SINE|Alu	111092	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr4.163164020.+	chr4	163164020	163164021	+	0	NA	Intergenic	AluY|SINE|Alu	-78834	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr1.23810085.+	chr1	23810085	23810086	+	0	NA	"intron (NM_017707, intron 1 of 24)"	CpG	665	NM_017707	55616	Hs.437379	NM_001143778	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	"ArfGAP with SH3 domain, ankyrin repeat and PH domain 3"	protein-coding
chr3.32620437.+	chr3	32620437	32620438	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8071	NM_016141	51143	Hs.529495	NM_016141	ENSG00000144635	DYNC1LI1	DNCLI1|LIC1	"dynein, cytoplasmic 1, light intermediate chain 1"	protein-coding
chr21.32687773.-	chr21	32687773	32687774	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243517	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr12.118079882.+	chr12	118079882	118079883	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280275	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr7.23478894.-	chr7	23478894	23478895	-	0	NA	"intron (NM_006547, intron 2 of 14)"	AluYf4|SINE|Alu	-31101	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
chr13.28367202.-	chr13	28367202	28367203	-	0	NA	"exon (NM_145657, exon 1 of 2)"	"exon (NM_145657, exon 1 of 2)"	-422	NM_145657	219409	Hs.351785	NM_145657		GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
chr17.40536649.+	chr17	40536649	40536650	+	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	3756	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr21.46737200.-	chr21	46737200	46737201	-	0	NA	Intergenic	Intergenic	-29233	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr16.89787315.-	chr16	89787315	89787316	-	0	NA	promoter-TSS (NM_001113525)	promoter-TSS (NM_001113525)	78	NM_152287	92822	Hs.290154	NM_001113525	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZFP276|ZNF477	zinc finger protein 276	protein-coding
chr8.31132249.-	chr8	31132249	31132250	-	0	NA	Intergenic	AluSx|SINE|Alu	241018	NM_001015508	29942	Hs.373778	NM_001015508	ENSG00000172733	PURG	PURG-A|PURG-B	purine-rich element binding protein G	protein-coding
chr14.102954968.-	chr14	102954968	102954969	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21160	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr10.99790453.+	chr10	99790453	99790454	+	0	NA	"5' UTR (NM_001206528, exon 1 of 15)"	"5' UTR (NM_001206528, exon 1 of 15)"	132	NM_001206528	55118	Hs.500736	NM_001206528	ENSG00000095713	CRTAC1	ASPIC|ASPIC1|CEP-68	cartilage acidic protein 1	protein-coding
chr3.82554755.-	chr3	82554755	82554756	-	0	NA	Intergenic	MER52A|LTR|ERV1	743805	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr8.142528620.-	chr8	142528620	142528621	-	0	NA	Intergenic	CpG	11290	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr1.9517598.+	chr1	9517598	9517599	+	0	NA	Intergenic	AluJb|SINE|Alu	-81930	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr21.11107125.+	chr21	11107125	11107126	+	0	NA	Intergenic	CpG	-8188	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr6.168209506.-	chr6	168209506	168209507	-	0	NA	Intergenic	AluSq|SINE|Alu	11967	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr22.32870999.+	chr22	32870999	32871000	+	0	NA	promoter-TSS (NM_001033024)	promoter-TSS (NM_001033024)	-225	NM_001033024	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr6.126111904.+	chr6	126111904	126111905	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-5	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr11.9503813.-	chr11	9503813	9503814	-	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	-21301	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr16.90237748.-	chr16	90237748	90237749	-	0	NA	Intergenic	CpG	95410	NM_001098173	11105	Hs.406695	NM_001098173	ENSG00000126856	PRDM7	PFM4|ZNF910	PR domain containing 7	protein-coding
chr12.84357938.-	chr12	84357938	84357939	-	0	NA	Intergenic	AluY|SINE|Alu	-948670	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr12.131419231.+	chr12	131419231	131419232	+	0	NA	Intergenic	AluSz|SINE|Alu	-19221	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr13.56400584.-	chr13	56400584	56400585	-	0	NA	Intergenic	AluY|SINE|Alu	-651995	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr12.1044013.+	chr12	1044013	1044014	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14850	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr13.100353718.+	chr13	100353718	100353719	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluY|SINE|Alu	58405	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr19.8129736.-	chr19	8129736	8129737	-	0	NA	TTS (NM_032447)	TTS (NM_032447)	-12090	NM_005624	6370	Hs.310511	NM_001201359	ENSG00000131142	CCL25	Ckb15|SCYA25|TECK	chemokine (C-C motif) ligand 25	protein-coding
chr20.49940288.+	chr20	49940288	49940289	+	0	NA	Intergenic	Intergenic	129226	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	miscRNA
chr22.22259543.-	chr22	22259543	22259544	-	0	NA	Intergenic	Intergenic	37573	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr16.88545404.-	chr16	88545404	88545405	-	0	NA	"intron (NM_153813, intron 1 of 9)"	"intron (NM_153813, intron 1 of 9)"	-10078	NR_049821	100847057		NR_049821		MIR5189	-	microRNA 5189	miscRNA
chr7.1575459.-	chr7	1575459	1575460	-	0	NA	"intron (NM_002360, intron 1 of 2)"	"intron (NM_002360, intron 1 of 2)"	-5091	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr1.40259974.+	chr1	40259974	40259975	+	0	NA	Intergenic	AluY|SINE|Alu	-5441	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr8.101595065.-	chr8	101595065	101595066	-	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	23051	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chr5.106923362.+	chr5	106923362	106923363	+	0	NA	"intron (NM_001962, intron 1 of 4)"	AluY|SINE|Alu	83234	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
chr4.162440592.+	chr4	162440592	162440593	+	0	NA	"intron (NM_001128427, intron 10 of 15)"	AluY|SINE|Alu	644594	NM_020116	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr13.100934721.-	chr13	100934721	100934722	-	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	-193452	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr20.57575089.+	chr20	57575089	57575090	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7220	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr22.18251523.-	chr22	18251523	18251524	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4498	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr14.73140751.+	chr14	73140751	73140752	+	0	NA	"intron (NM_012074, intron 8 of 8)"	"intron (NM_012074, intron 8 of 8)"	220058	NM_012074	8110	Hs.162868	NM_012074	ENSG00000205683	DPF3	CERD4	"D4, zinc and double PHD fingers, family 3"	protein-coding
chr12.118663880.+	chr12	118663880	118663881	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	90010	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr2.240371789.-	chr2	240371789	240371790	-	0	NA	Intergenic	SVA_D|Other|Other	49146	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr7.5703242.+	chr7	5703242	5703243	+	0	NA	"intron (NR_046834, intron 2 of 2)"	"intron (NR_046834, intron 2 of 2)"	16850	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr19.44331391.+	chr19	44331391	44331392	+	0	NA	promoter-TSS (NM_181845)	promoter-TSS (NM_181845)	-82	NM_181845	284349	Hs.652513	NM_181845	ENSG00000167637	ZNF283	HZF41	zinc finger protein 283	protein-coding
chrX.40029678.-	chrX	40029678	40029679	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6904	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr11.1224118.-	chr11	1224118	1224119	-	0	NA	Intergenic	Intergenic	20177	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr7.821279.+	chr7	821279	821280	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33915	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr17.47735118.-	chr17	47735118	47735119	-	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	-20407	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr7.100963602.-	chr7	100963602	100963603	-	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	-1491	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr22.17719079.-	chr22	17719079	17719080	-	0	NA	Intergenic	AluSg|SINE|Alu	28300	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr3.47530714.+	chr3	47530714	47530715	+	0	NA	Intergenic	AluY|SINE|Alu	-13269	NM_012235	22937	Hs.531789	NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
chr1.217394783.-	chr1	217394783	217394784	-	0	NA	Intergenic	AluSq2|SINE|Alu	83686	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr18.34765012.+	chr18	34765012	34765013	+	0	NA	"intron (NM_020776, intron 9 of 9)"	AluY|SINE|Alu	-355833	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr7.124427313.-	chr7	124427313	124427314	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3551	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr19.10041255.+	chr19	10041255	10041256	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5815	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr13.96681125.-	chr13	96681125	96681126	-	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	-24611	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr6.89377987.-	chr6	89377987	89377988	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295361	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr10.104238488.+	chr10	104238488	104238489	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17318	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr13.31023966.-	chr13	31023966	31023967	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16115	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr16.71571147.-	chr16	71571147	71571148	-	0	NA	"exon (NM_001166395, exon 2 of 2)"	"exon (NM_001166395, exon 2 of 2)"	-10993	NM_001166395	10164	Hs.251383	NM_001166395	ENSG00000140835	CHST4	GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4	protein-coding
chr4.166248606.+	chr4	166248606	166248607	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-212	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr22.51045142.+	chr22	51045142	51045143	+	0	NA	"exon (NM_016431, exon 7 of 10)"	"exon (NM_016431, exon 7 of 10)"	3580	NM_016431	23542	Hs.558180	NM_012324	ENSG00000008735	MAPK8IP2	IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
chr9.105850392.-	chr9	105850392	105850393	-	0	NA	Intergenic	AluYc|SINE|Alu	-92799	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr12.7316999.-	chr12	7316999	7317000	-	0	NA	Intergenic	AluSx1|SINE|Alu	24760	NM_001131026	5830	Hs.567327	NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1	peroxisomal biogenesis factor 5	protein-coding
chrX.129231013.+	chrX	129231013	129231014	+	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	13462	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr2.157198667.+	chr2	157198667	157198668	+	0	NA	Intergenic	CpG	-9380	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr20.46019507.-	chr20	46019507	46019508	-	0	NA	Intergenic	AluY|SINE|Alu	34033	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr6.117869098.+	chr6	117869098	117869099	+	0	NA	"intron (NM_173674, intron 14 of 14)"	CpG	54607	NM_001017408	57120	Hs.191539	NM_001017408	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi-associated PDZ and coiled-coil motif containing	protein-coding
chr12.100804205.+	chr12	100804205	100804206	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53348	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chrX.58299388.-	chrX	58299388	58299389	-	0	NA	Intergenic	GSATX|Satellite|centr	362321	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	"zinc finger, X-linked, duplicated A"	protein-coding
chr7.2368452.-	chr7	2368452	2368453	-	0	NA	Intergenic	AluY|SINE|Alu	14353	NM_013321	29886	Hs.584900	NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
chr7.63582787.-	chr7	63582787	63582788	-	0	NA	Intergenic	AluJo|SINE|Alu	-76966	NM_001159522	442319	Hs.640774	NM_001159522	ENSG00000257482	ZNF727	-	zinc finger protein 727	protein-coding
chr1.41861995.-	chr1	41861995	41861996	-	0	NA	Intergenic	L2b|LINE|L2	-88349	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr15.89721831.+	chr15	89721831	89721832	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43091	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr3.15431329.-	chr3	15431329	15431330	-	0	NA	Intergenic	AluSp|SINE|Alu	-37713	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr20.62479314.+	chr20	62479314	62479315	+	0	NA	Intergenic	Intergenic	-13252	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr11.342901.-	chr11	342901	342902	-	0	NA	Intergenic	AluSz|SINE|Alu	21987	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr5.157072884.+	chr5	157072884	157072885	+	0	NA	"intron (NM_178424, intron 3 of 4)"	AluSp|SINE|Alu	6544	NM_007017	11063	Hs.744348	NM_007017	ENSG00000039600	SOX30	-	SRY (sex determining region Y)-box 30	protein-coding
chr12.124810204.-	chr12	124810204	124810205	-	0	NA	"intron (NM_001206654, intron 47 of 47)"	"intron (NM_001206654, intron 47 of 47)"	-36494	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	FAM101A	-	"family with sequence similarity 101, member A"	protein-coding
chr12.3297824.+	chr12	3297824	3297825	+	0	NA	"intron (NM_006675, intron 2 of 8)"	"intron (NM_006675, intron 2 of 8)"	111303	NM_006675	10867	Hs.504517	NM_001168320	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
chr14.23706335.-	chr14	23706335	23706336	-	0	NA	Intergenic	AluJb|SINE|Alu	-48974	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr18.77105072.+	chr18	77105072	77105073	+	0	NA	"intron (NM_198531, intron 21 of 29)"	"intron (NM_198531, intron 21 of 29)"	-50700	NM_006162	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr14.103988600.-	chr14	103988600	103988601	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-596	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr13.39300382.+	chr13	39300382	39300383	+	0	NA	"intron (NM_207361, intron 2 of 23)"	MER74A|LTR|ERVL	39209	NM_207361	341640	Hs.253994	NM_207361	ENSG00000150893	FREM2	-	FRAS1 related extracellular matrix protein 2	protein-coding
chr19.16136971.+	chr19	16136971	16136972	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7552	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr3.39425761.-	chr3	39425761	39425762	-	0	NA	"intron (NM_017875, intron 1 of 6)"	CpG	-946	NM_017875	54977	Hs.369615	NM_017875	ENSG00000144659	SLC25A38	-	"solute carrier family 25, member 38"	protein-coding
chr22.22259623.+	chr22	22259623	22259624	+	0	NA	Intergenic	AluSq2|SINE|Alu	-37653	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chrX.69654759.+	chrX	69654759	69654760	+	0	NA	Intergenic	Intergenic	-9946	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr18.12494759.-	chr18	12494759	12494760	-	0	NA	"intron (NM_001128627, intron 7 of 15)"	AluY|SINE|Alu	-86864	NM_006553	10650	Hs.514718	NM_001142406	ENSG00000141391	SLMO1	C18orf43|HFL-EDDG1|PRELID3A	slowmo homolog 1 (Drosophila)	protein-coding
chr9.131790147.-	chr9	131790147	131790148	-	0	NA	"intron (NM_020145, intron 1 of 10)"	"intron (NM_020145, intron 1 of 10)"	-432	NM_020145	56904	Hs.460238	NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3-domain GRB2-like endophilin B2	protein-coding
chr2.121244116.+	chr2	121244116	121244117	+	0	NA	Intergenic	Intergenic	-20191	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr12.96096907.+	chr12	96096907	96096908	+	0	NA	"intron (NM_021229, intron 5 of 9)"	AluSx1|SINE|Alu	53876	NR_077225	100132594	Hs.676211	NR_077225		PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
chr17.4643001.+	chr17	4643001	4643002	+	0	NA	promoter-TSS (NM_001136046)	promoter-TSS (NM_001136046)	222	NM_001100812	58191	Hs.513885	NM_001100812	ENSG00000161921	CXCL16	CXCLG16|SR-PSOX|SRPSOX	chemokine (C-X-C motif) ligand 16	protein-coding
chr6.43016795.+	chr6	43016795	43016796	+	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	4888	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr12.34492667.+	chr12	34492667	34492668	+	0	NA	Intergenic	GSATII|Satellite|centr	317451	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr9.80898912.+	chr9	80898912	80898913	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13147	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr4.118425596.+	chr4	118425596	118425597	+	0	NA	Intergenic	AluY|SINE|Alu	-418860	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr2.109308560.-	chr2	109308560	109308561	-	0	NA	Intergenic	AluY|SINE|Alu	27377	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr7.21370264.+	chr7	21370264	21370265	+	0	NA	Intergenic	MER52D|LTR|ERV1	-97425	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr1.40237090.-	chr1	40237090	40237091	-	0	NA	promoter-TSS (NM_022120)	promoter-TSS (NM_022120)	70	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	SCOTT	3-oxoacid CoA transferase 2	protein-coding
chr19.22949507.-	chr19	22949507	22949508	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	-17466	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chrX.133328838.-	chrX	133328838	133328839	-	0	NA	Intergenic	AluSg|SINE|Alu	24530	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr2.44456050.-	chr2	44456050	44456051	-	0	NA	"intron (NM_177968, intron 5 of 5)"	AluSp|SINE|Alu	46547	NM_000341	6519	Hs.112916	NM_000341		SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	"solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1"	protein-coding
chr3.172180214.-	chr3	172180214	172180215	-	0	NA	Intergenic	AluY|SINE|Alu	13968	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr1.70033246.+	chr1	70033246	70033247	+	0	NA	Intergenic	CpG	-192612	NM_020794	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
chr17.78075292.+	chr17	78075292	78075293	+	0	NA	promoter-TSS (NM_000152)	promoter-TSS (NM_000152)	-63	NM_001079804	2548	Hs.1437	NM_000152	ENSG00000171298	GAA	LYAG	"glucosidase, alpha; acid"	protein-coding
chr3.10858295.-	chr3	10858295	10858296	-	0	NA	"intron (NM_014229, intron 1 of 13)"	CpG	-378	NM_014229	6538	Hs.657405	NM_014229		SLC6A11	GAT-3|GAT3|GAT4	"solute carrier family 6 (neurotransmitter transporter, GABA), member 11"	protein-coding
chr3.133292593.+	chr3	133292593	133292594	+	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	159	NM_017548	55573	Hs.518265	NM_001134422	ENSG00000091527	CDV3	H41	CDV3 homolog (mouse)	protein-coding
chr3.195498056.-	chr3	195498056	195498057	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40788	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr1.10727927.-	chr1	10727927	10727928	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128806	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr3.164119663.+	chr3	164119663	164119664	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676620	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr10.12344452.-	chr10	12344452	12344453	-	0	NA	Intergenic	AluSc8|SINE|Alu	47131	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr11.1218151.+	chr11	1218151	1218152	+	0	NA	Intergenic	Intergenic	-26144	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr15.85162491.+	chr15	85162491	85162492	+	0	NA	"intron (NM_181877, intron 2 of 2)"	AluY|SINE|Alu	-12200	NR_003654	54581	Hs.658114	NM_022050	ENSG00000176700	SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
chr5.100467873.-	chr5	100467873	100467874	-	0	NA	Intergenic	AluSx1|SINE|Alu	228886	NM_005668	7903	Hs.308628	NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4"	protein-coding
chr11.66025364.+	chr11	66025364	66025365	+	0	NA	"intron (NM_001134774, intron 1 of 14)"	CpG	190	NM_022822	64837	Hs.280792	NM_001134774	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
chr7.5703169.+	chr7	5703169	5703170	+	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	16923	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr10.99258354.-	chr10	99258354	99258355	-	0	NA	promoter-TSS (NM_024954)	promoter-TSS (NM_024954)	-12	NM_022362	64210	Hs.500721	NM_022362	ENSG00000155229	MMS19	MET18|MMS19L|hMMS19	MMS19 nucleotide excision repair homolog (S. cerevisiae)	protein-coding
chr2.205861388.-	chr2	205861388	205861389	-	0	NA	"intron (NM_205863, intron 3 of 21)"	L1PA2|LINE|L1	-450872	NM_057177	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 partitioning defective 3 homolog B (C. elegans)	protein-coding
chr5.17207799.-	chr5	17207799	17207800	-	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	9133	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr10.59080667.-	chr10	59080667	59080668	-	0	NA	Intergenic	Intergenic	16348	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr10.30847997.+	chr10	30847997	30847998	+	0	NA	Intergenic	AluSp|SINE|Alu	70650	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
chr18.10581568.+	chr18	10581568	10581569	+	0	NA	Intergenic	AluSq2|SINE|Alu	55695	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr1.6094725.+	chr1	6094725	6094726	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	377	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr11.67351081.+	chr11	67351081	67351082	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	15	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr3.112807978.-	chr3	112807978	112807979	-	0	NA	Intergenic	AluYc|SINE|Alu	69423	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chrX.29933176.+	chrX	29933176	29933177	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300499	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr7.156298606.+	chr7	156298606	156298607	+	0	NA	Intergenic	Intergenic	-34579	NR_024119	64433	Hs.404170	NR_024119		LINC00244	C7orf4|NCRNA00244	long intergenic non-protein coding RNA 244	miscRNA
chr5.138417388.-	chr5	138417388	138417389	-	0	NA	"intron (NM_001037633, intron 4 of 10)"	AluSx|SINE|Alu	-116677	NM_022464	64374	Hs.483521	NM_001037633	ENSG00000120725	SIL1	BAP|MSS|ULG5	"SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)"	protein-coding
chr4.184656693.-	chr4	184656693	184656694	-	0	NA	Intergenic	SVA_E|Other|Other	-76273	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY	trafficking protein particle complex 11	protein-coding
chr12.132623235.+	chr12	132623235	132623236	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5645	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr22.20860467.-	chr22	20860467	20860468	-	0	NA	Intergenic	AluSg4|SINE|Alu	1419	NM_001003891	51586	Hs.517421	NM_001003891	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
chr14.105618895.+	chr14	105618895	105618896	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16266	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr19.18057797.-	chr19	18057797	18057798	-	0	NA	Intergenic	AluSx|SINE|Alu	4314	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr22.43718243.+	chr22	43718243	43718244	+	0	NA	"intron (NM_173050, intron 2 of 21)"	AluSc8|SINE|Alu	21151	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr6.89377977.+	chr6	89377977	89377978	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295371	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr16.8974164.-	chr16	8974164	8974165	-	0	NA	Intergenic	Intergenic	11301	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr5.36143020.+	chr5	36143020	36143021	+	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	5070	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr3.42642374.-	chr3	42642374	42642375	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-198	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr13.31735125.+	chr13	31735125	31735126	+	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	992	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr12.33592595.-	chr12	33592595	33592596	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-159	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr6.152129587.-	chr6	152129587	152129588	-	0	NA	"intron (NM_001122742, intron 3 of 9)"	CpG	-773	NM_000125	2099	Hs.208124	NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|Era|NR3A1	estrogen receptor 1	protein-coding
chr7.5557980.-	chr7	5557980	5557981	-	0	NA	Intergenic	AluYc|SINE|Alu	4581	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr19.54266158.+	chr19	54266158	54266159	+	0	NA	TTS (NR_030222)	TTS (NR_030222)	560	NR_030222	574500		NR_030222	ENSG00000207723	MIR519A2	MIRN519A-2|MIRN519A2	microRNA 519a-2	miscRNA
chr6.123144179.-	chr6	123144179	123144180	-	0	NA	Intergenic	AluY|SINE|Alu	-34208	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr5.1725905.-	chr5	1725905	1725906	-	0	NA	Intergenic	Intergenic	16922	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	miscRNA
chr12.107112625.-	chr12	107112625	107112626	-	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	34147	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr10.24081716.+	chr10	24081716	24081717	+	0	NA	"intron (NM_001098500, intron 1 of 18)"	AluY|SINE|Alu	98041	NM_001098500	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr13.99083513.+	chr13	99083513	99083514	+	0	NA	"exon (NM_005766, exon 18 of 27)"	"exon (NM_005766, exon 18 of 27)"	90828	NM_003576	8428	Hs.508514	NM_001032296	ENSG00000102572	STK24	MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
chr7.158197539.+	chr7	158197539	158197540	+	0	NA	"intron (NM_130842, intron 1 of 21)"	(CCCCAG)n|Simple_repeat|Simple_repeat	127966	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr2.1562089.-	chr2	1562089	1562090	-	0	NA	Intergenic	AluY|SINE|Alu	-143909	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chrX.42145013.+	chrX	42145013	42145014	+	0	NA	Intergenic	SVA_D|Other|Other	-362726	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr11.72160510.+	chr11	72160510	72160511	+	0	NA	Intergenic	AluY|SINE|Alu	-14786	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr8.40290177.+	chr8	40290177	40290178	+	0	NA	Intergenic	L1PA2|LINE|L1	279190	NM_020130	56892	Hs.644772	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
chr7.45750414.+	chr7	45750414	45750415	+	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	58203	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr10.28966545.+	chr10	28966545	28966546	+	0	NA	"5' UTR (NM_012342, exon 1 of 3)"	"5' UTR (NM_012342, exon 1 of 3)"	121	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	protein-coding
chr2.87569793.-	chr2	87569793	87569794	-	0	NA	Intergenic	Intergenic	185181	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr14.21542609.+	chr14	21542609	21542610	+	0	NA	"exon (NM_018071, exon 3 of 24)"	"exon (NM_018071, exon 3 of 24)"	4082	NM_018071	55701	Hs.35125	NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding
chr8.28669072.-	chr8	28669072	28669073	-	0	NA	"intron (NR_026826, intron 6 of 14)"	AluJb|SINE|Alu	-78360	NM_001172562	55756	Hs.162397	NM_001145159	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
chr2.128430580.+	chr2	128430580	128430581	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2184	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr4.185174242.-	chr4	185174242	185174243	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35128	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr19.1871377.+	chr19	1871377	1871378	+	0	NA	Intergenic	Intergenic	-7813	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr1.17034278.+	chr1	17034278	17034279	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12374	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr8.7414142.+	chr8	7414142	7414143	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2484	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr13.111268281.-	chr13	111268281	111268282	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-350	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr18.46969447.+	chr18	46969447	46969448	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17632	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr16.60255815.+	chr16	60255815	60255816	+	0	NA	Intergenic	AluSc8|SINE|Alu	-466720	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr1.46768517.-	chr1	46768517	46768518	-	0	NA	promoter-TSS (NM_006004)	promoter-TSS (NM_006004)	-521	NM_006369	10489	Hs.144941	NM_006369	ENSG00000132128	LRRC41	MUF1|RP4-636H5.2	leucine rich repeat containing 41	protein-coding
chr2.97431137.-	chr2	97431137	97431138	-	0	NA	"intron (NM_020184, intron 1 of 6)"	AluSp|SINE|Alu	-4498	NM_020184	26504	Hs.175043	NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin M4	protein-coding
chr16.49892137.+	chr16	49892137	49892138	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-307	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr1.149646770.+	chr1	149646770	149646771	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70317	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr21.43791022.-	chr21	43791022	43791023	-	0	NA	TTS (NM_024022)	TTS (NM_024022)	4378	NM_003225	7031	Hs.162807	NM_003225	ENSG00000160182	TFF1	BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2	trefoil factor 1	protein-coding
chr1.151573442.-	chr1	151573442	151573443	-	0	NA	Intergenic	SVA_E|Other|Other	11220	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr10.368653.-	chr10	368653	368654	-	0	NA	"intron (NM_014974, intron 31 of 36)"	CpG	-142719	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr5.176831880.-	chr5	176831880	176831881	-	0	NA	"exon (NM_000505, exon 7 of 14)"	"exon (NM_000505, exon 7 of 14)"	4243	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
chr6.126111903.+	chr6	126111903	126111904	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-6	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr7.100044629.+	chr7	100044629	100044630	+	0	NA	Intergenic	AluY|SINE|Alu	-10535	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr20.32072316.+	chr20	32072316	32072317	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5612	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr9.127099238.+	chr9	127099238	127099239	+	0	NA	"intron (NM_001166170, intron 7 of 9)"	AluSx|SINE|Alu	-16514	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	miscRNA
chr11.120428556.+	chr11	120428556	120428557	+	0	NA	Intergenic	AluY|SINE|Alu	-102472	NM_014619	2900	Hs.568901	NM_014619		GRIK4	EAA1|GRIK|GluK4|KA1	"glutamate receptor, ionotropic, kainate 4"	protein-coding
chr21.43198267.+	chr21	43198267	43198268	+	0	NA	Intergenic	Intergenic	-11018	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr16.6394247.+	chr16	6394247	6394248	+	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluSq10|SINE|Alu	325115	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr1.25568286.-	chr1	25568286	25568287	-	0	NA	TTS (NM_020317)	TTS (NM_020317)	-5699	NM_020317	57035	Hs.695168	NM_207035	ENSG00000117616	C1orf63	DJ465N24.2.1|NPD014|RP3-465N24.4	chromosome 1 open reading frame 63	protein-coding
chr19.12606209.+	chr19	12606209	12606210	+	0	NA	Intergenic	CpG	-10577	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr13.31023986.+	chr13	31023986	31023987	+	0	NA	Intergenic	AluSq2|SINE|Alu	16095	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr2.242840584.+	chr2	242840584	242840585	+	0	NA	Intergenic	AluSx1|SINE|Alu	28698	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr4.103422415.-	chr4	103422415	103422416	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	71	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chrX.137770376.+	chrX	137770376	137770377	+	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	-20422	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr4.177146942.-	chr4	177146942	177146943	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30120	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr15.74425144.-	chr15	74425144	74425145	-	0	NA	"exon (NM_001130136, exon 4 of 4)"	"exon (NM_001130136, exon 4 of 4)"	-2401	NM_020851	57611	Hs.254775	NM_001130136	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding
chr8.61460859.+	chr8	61460859	61460860	+	0	NA	"intron (NM_001242644, intron 1 of 6)"	SVA_F|Other|Other	31390	NM_001242644	5862	Hs.369017	NM_001242644	ENSG00000104388	RAB2A	LHX|RAB2	"RAB2A, member RAS oncogene family"	protein-coding
chr2.101245806.-	chr2	101245806	101245807	-	0	NA	Intergenic	Intergenic	-66388	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr18.10581583.+	chr18	10581583	10581584	+	0	NA	Intergenic	AluSq2|SINE|Alu	55710	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr8.23131080.-	chr8	23131080	23131081	-	0	NA	Intergenic	AluSc8|SINE|Alu	14532	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr9.131099680.+	chr9	131099680	131099681	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3159	NM_005094	10999	Hs.656699	NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	"solute carrier family 27 (fatty acid transporter), member 4"	protein-coding
chr3.22843335.+	chr3	22843335	22843336	+	0	NA	Intergenic	L1PA2|LINE|L1	-401449	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr20.43244543.-	chr20	43244543	43244544	-	0	NA	"intron (NM_007066, intron 3 of 3)"	"intron (NM_007066, intron 3 of 3)"	-35833	NM_000022	100	Hs.654536	NM_000022	ENSG00000196839	ADA	-	adenosine deaminase	protein-coding
chr8.104851163.+	chr8	104851163	104851164	+	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	19747	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr2.238600547.-	chr2	238600547	238600548	-	0	NA	promoter-TSS (NM_001137553)	promoter-TSS (NM_001137553)	260	NM_004735	9208	Hs.471779	NM_001137550	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
chr6.165205811.+	chr6	165205811	165205812	+	0	NA	Intergenic	AluYb8|SINE|Alu	517300	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr3.102973938.+	chr3	102973938	102973939	+	0	NA	Intergenic	SVA_D|Other|Other	820079	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr20.52741082.-	chr20	52741082	52741083	-	0	NA	Intergenic	AluSx1|SINE|Alu	-49434	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr4.141124861.-	chr4	141124861	141124862	-	0	NA	Intergenic	AluSc8|SINE|Alu	49628	NM_018717	55534	Hs.586165	NM_018717		MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
chr7.5610920.-	chr7	5610920	5610921	-	0	NA	Intergenic	AluSx1|SINE|Alu	21516	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr22.46929365.+	chr22	46929365	46929366	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3702	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr2.179303684.+	chr2	179303684	179303685	+	0	NA	"intron (NM_003690, intron 6 of 7)"	AluY|SINE|Alu	11671	NM_001139518	8575	Hs.570274	NM_001139517	ENSG00000180228	PRKRA	DYT16|PACT|RAX	"protein kinase, interferon-inducible double stranded RNA dependent activator"	protein-coding
chr17.2904000.+	chr17	2904000	2904001	+	0	NA	"intron (NM_015085, intron 14 of 24)"	"intron (NM_015085, intron 14 of 24)"	62901	NM_014566	8386	Hs.553508	NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31	"olfactory receptor, family 1, subfamily D, member 5"	protein-coding
chr2.217746771.+	chr2	217746771	217746772	+	0	NA	Intergenic	AluSz|SINE|Alu	-21989	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr11.2051322.+	chr11	2051322	2051323	+	0	NA	Intergenic	Intergenic	-32257	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr4.26862506.+	chr4	26862506	26862507	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	193	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr2.42801416.-	chr2	42801416	42801417	-	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	-5745	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr20.1317818.-	chr20	1317818	1317819	-	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	7939	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr1.10727929.-	chr1	10727929	10727930	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128804	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr5.40801248.-	chr5	40801248	40801249	-	0	NA	Intergenic	SVA_E|Other|Other	2951	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr7.50673348.-	chr7	50673348	50673349	-	0	NA	"intron (NM_001001549, intron 10 of 14)"	"intron (NM_001001549, intron 10 of 14)"	40194	NM_001082971	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
chr19.34248211.-	chr19	34248211	34248212	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39540	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr17.26336763.+	chr17	26336763	26336764	+	0	NA	Intergenic	AluSz|SINE|Alu	-32925	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr8.23131058.-	chr8	23131058	23131059	-	0	NA	Intergenic	AluSc8|SINE|Alu	14554	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr16.60255854.-	chr16	60255854	60255855	-	0	NA	Intergenic	AluSc8|SINE|Alu	466759	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr1.17034294.+	chr1	17034294	17034295	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12358	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr10.135094703.-	chr10	135094703	135094704	-	0	NA	"intron (NM_006659, intron 17 of 17)"	(GGCTG)n|Simple_repeat|Simple_repeat	4296	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr7.5374856.-	chr7	5374856	5374857	-	0	NA	"intron (NM_001080495, intron 18 of 29)"	AluSx1|SINE|Alu	-52295	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr10.94709467.-	chr10	94709467	94709468	-	0	NA	"intron (NM_001013848, intron 14 of 21)"	AluSq2|SINE|Alu	-101242	NM_019053	54536	Hs.655657	NM_001013848	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
chr19.13975874.+	chr19	13975874	13975875	+	0	NA	Intergenic	CpG	-9639	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	miscRNA
chr11.638961.+	chr11	638961	638962	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1656	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr12.110044244.+	chr12	110044244	110044245	+	0	NA	Intergenic	Intergenic	32744	NM_001114185	4598	Hs.130607	NM_000431	ENSG00000110921	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding
chr10.35336419.+	chr10	35336419	35336420	+	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	26839	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chrX.39680328.+	chrX	39680328	39680329	+	0	NA	Intergenic	CpG	276391	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr3.122695701.+	chr3	122695701	122695702	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-720	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr14.90540096.+	chr14	90540096	90540097	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSx|SINE|Alu	11988	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chrM.16406.+	chrM	16406	16407	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr20.13654615.-	chr20	13654615	13654616	-	0	NA	Intergenic	AluY|SINE|Alu	35032	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr16.85371306.+	chr16	85371306	85371307	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-31375	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr18.512195.-	chr18	512195	512196	-	0	NA	Intergenic	SVA_E|Other|Other	11466	NM_130386	81035	Hs.464422	NM_130386	ENSG00000158270	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin sub-family member 12	protein-coding
chr3.126260564.+	chr3	126260564	126260565	+	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	17194	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr19.45524626.-	chr19	45524626	45524627	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17672	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr19.22949514.+	chr19	22949514	22949515	+	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	17459	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr19.21734839.-	chr19	21734839	21734840	-	0	NA	Intergenic	SVA_D|Other|Other	-46402	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr6.170547847.-	chr6	170547847	170547848	-	0	NA	Intergenic	L2b|LINE|L2	-23810	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chrX.32812514.-	chrX	32812514	32812515	-	0	NA	"intron (NM_000109, intron 7 of 78)"	AluY|SINE|Alu	-225803	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr2.32100850.-	chr2	32100850	32100851	-	0	NA	"intron (NM_015955, intron 7 of 8)"	AluSz|SINE|Alu	-134848	NM_015955	51072	Hs.444969	NM_001137602	ENSG00000162959	MEMO1	C2orf4|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
chr3.135859536.+	chr3	135859536	135859537	+	0	NA	"intron (NM_001190447, intron 12 of 12)"	AluSp|SINE|Alu	53774	NM_001145417	55167	Hs.18631	NM_001145417	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
chr9.130867519.+	chr9	130867519	130867520	+	0	NA	"intron (NM_001265614, intron 6 of 10)"	AluSx1|SINE|Alu	6758	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr9.93000174.-	chr9	93000174	93000175	-	0	NA	Intergenic	AluY|SINE|Alu	196393	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr9.77381637.+	chr9	77381637	77381638	+	0	NA	"intron (NM_001177310, intron 25 of 38)"	AluSq2|SINE|Alu	120626	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr20.62657585.+	chr20	62657585	62657586	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8112	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr20.1207050.-	chr20	1207050	1207051	-	0	NA	"intron (NM_001136566, intron 1 of 13)"	CpG	-286	NM_001136566	642636	Hs.713451	NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21-like 1 (S. pombe)	protein-coding
chr22.43238128.+	chr22	43238128	43238129	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15280	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr1.65731438.+	chr1	65731438	65731439	+	0	NA	"intron (NM_014787, intron 1 of 18)"	CpG	1061	NM_014787	9829	Hs.647643	NM_001256864	ENSG00000116675	DNAJC6	DJC6	"DnaJ (Hsp40) homolog, subfamily C, member 6"	protein-coding
chr11.67336030.-	chr11	67336030	67336031	-	0	NA	Intergenic	AluSg|SINE|Alu	15036	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr19.41641943.+	chr19	41641943	41641944	+	0	NA	Intergenic	CpG	21590	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr7.95234893.-	chr7	95234893	95234894	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8968	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr7.1147525.+	chr7	1147525	1147526	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19802	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr4.177146900.-	chr4	177146900	177146901	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30078	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr19.7462542.-	chr19	7462542	7462543	-	0	NA	"intron (NM_015318, intron 1 of 20)"	AluY|SINE|Alu	-2543	NM_015318	23370	Hs.736818	NM_001130955	ENSG00000104880	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
chr22.49948652.+	chr22	49948652	49948653	+	0	NA	Intergenic	Intergenic	102538	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr9.14830724.+	chr9	14830724	14830725	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51193	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr4.113700412.+	chr4	113700412	113700413	+	0	NA	Intergenic	AluY|SINE|Alu	-38827	NM_001127493	287	Hs.620557	NM_001127493	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	"ankyrin 2, neuronal"	protein-coding
chrX.39680368.+	chrX	39680368	39680369	+	0	NA	Intergenic	CpG	276351	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr21.32687755.-	chr21	32687755	32687756	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243535	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chrX.21676559.-	chrX	21676559	21676560	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	111	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr5.27408070.+	chr5	27408070	27408071	+	0	NA	Intergenic	AluY|SINE|Alu	-64329	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr6.127845948.+	chr6	127845948	127845949	+	0	NA	Intergenic	AluY|SINE|Alu	-5448	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr2.10578255.+	chr2	10578255	10578256	+	0	NA	Intergenic	AluSz|SINE|Alu	8720	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	"small nucleolar RNA, H/ACA box 80B"	snoRNA
chr22.37731203.+	chr22	37731203	37731204	+	0	NA	Intergenic	CpG	52708	NM_013385	27128	Hs.170944	NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4	cytohesin 4	protein-coding
chr18.74505078.+	chr18	74505078	74505079	+	0	NA	Intergenic	Intergenic	29173	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr1.9517588.+	chr1	9517588	9517589	+	0	NA	Intergenic	AluJb|SINE|Alu	-81940	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr1.27394462.-	chr1	27394462	27394463	-	0	NA	Intergenic	AluY|SINE|Alu	55129	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr22.43175069.+	chr22	43175069	43175070	+	0	NA	Intergenic	AluY|SINE|Alu	-58193	NM_017436	53947	Hs.105956	NM_017436		A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	"alpha 1,4-galactosyltransferase"	protein-coding
chr1.27595487.-	chr1	27595487	27595488	-	0	NA	"intron (NM_015023, intron 3 of 15)"	AluSx|SINE|Alu	-34480	NM_001276252	23038	Hs.469154	NM_001276252	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
chr8.3825582.-	chr8	3825582	3825583	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026746	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr6.154868725.+	chr6	154868725	154868726	+	0	NA	Intergenic	AluY|SINE|Alu	-36972	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding
chr18.11086432.+	chr18	11086432	11086433	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62329	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr11.64107770.+	chr11	64107770	64107771	+	0	NA	promoter-TSS (NM_032251)	promoter-TSS (NM_032251)	80	NM_032251	283234	Hs.98564	NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
chr8.47128766.+	chr8	47128766	47128767	+	0	NA	Intergenic	GSAT|Satellite|centr	-623742	NR_027012	497634	Hs.406982	NR_027012	ENSG00000253314	LINC00293	BEYLA|NCRNA00293	long intergenic non-protein coding RNA 293	miscRNA
chr2.71562029.+	chr2	71562029	71562030	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3144	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr14.32406443.+	chr14	32406443	32406444	+	0	NA	Intergenic	AluYa5|SINE|Alu	139462	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	miscRNA
chr18.29434802.-	chr18	29434802	29434803	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88289	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr7.44265701.-	chr7	44265701	44265702	-	0	NA	"intron (NM_172084, intron 12 of 15)"	"intron (NM_172084, intron 12 of 15)"	-25123	NM_006555	10652	Hs.520794	NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding
chr16.33396052.-	chr16	33396052	33396053	-	0	NA	Intergenic	Intergenic	97350	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr7.150777778.-	chr7	150777778	150777779	-	0	NA	TTS (NM_031434)	TTS (NM_031434)	-192	NM_001258461	10922	Hs.647094	NM_001258461	ENSG00000164896	FASTK	FAST	Fas-activated serine/threonine kinase	protein-coding
chr6.85201048.+	chr6	85201048	85201049	+	0	NA	Intergenic	AluSx1|SINE|Alu	-263713	NM_014895	22832	Hs.485865	NM_014895	ENSG00000135315	KIAA1009	C6orf84|QN1	KIAA1009	protein-coding
chr2.125181289.+	chr2	125181289	125181290	+	0	NA	"intron (NM_130773, intron 4 of 23)"	AluY|SINE|Alu	398425	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr19.1229137.-	chr19	1229137	1229138	-	0	NA	TTS (NM_152769)	TTS (NM_152769)	-8853	NM_152769	255057	Hs.346575	NM_152769	ENSG00000099625	C19orf26	DOS	chromosome 19 open reading frame 26	protein-coding
chr5.136873790.-	chr5	136873790	136873791	-	0	NA	Intergenic	SVA_D|Other|Other	38772	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1"	protein-coding
chr5.45596293.+	chr5	45596293	45596294	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99927	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chrX.67548028.-	chrX	67548028	67548029	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105271	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr20.5302355.+	chr20	5302355	5302356	+	0	NA	Intergenic	AluY|SINE|Alu	-7340	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr6.70692615.+	chr6	70692615	70692616	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116167	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr7.5355955.-	chr7	5355955	5355956	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33394	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr4.114652881.-	chr4	114652881	114652882	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30202	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr19.45721092.-	chr19	45721092	45721093	-	0	NA	"intron (NM_138568, intron 7 of 9)"	"intron (NM_138568, intron 7 of 9)"	-16377	NM_138568	90332	Hs.337557	NM_138568	ENSG00000130201	EXOC3L2	XTP7	exocyst complex component 3-like 2	protein-coding
chrX.31406373.+	chrX	31406373	31406374	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120042	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr15.41613137.+	chr15	41613137	41613138	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11682	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr6.58776971.+	chr6	58776971	58776972	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-489247	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chrX.70493524.-	chrX	70493524	70493525	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9518	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr13.24884226.+	chr13	24884226	24884227	+	0	NA	"intron (NM_178540, intron 1 of 3)"	AluSg7|SINE|Alu	510	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr14.102786383.+	chr14	102786383	102786384	+	0	NA	"exon (NM_018335, exon 1 of 8)"	"exon (NM_018335, exon 1 of 8)"	295	NM_018335	55778	Hs.743359	NM_001267827	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
chr3.36494772.-	chr3	36494772	36494773	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72675	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr8.144503709.+	chr8	144503709	144503710	+	0	NA	Intergenic	CpG	8893	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.70199648.-	chr2	70199648	70199649	-	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	10251	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr12.113494406.-	chr12	113494406	113494407	-	0	NA	Intergenic	CpG	1256	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr11.113666012.+	chr11	113666012	113666013	+	0	NA	Intergenic	AluSx|SINE|Alu	15494	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr4.103422427.+	chr4	103422427	103422428	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-59	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr22.24237330.-	chr22	24237330	24237331	-	0	NA	TTS (NM_002415)	TTS (NM_002415)	-765	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr19.10408175.+	chr19	10408175	10408176	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7520	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr17.37009809.-	chr17	37009809	37009810	-	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	-244	NM_000978	9349	Hs.406300	NM_000978		RPL23	L23|rpL17	ribosomal protein L23	protein-coding
chr1.10927318.+	chr1	10927318	10927319	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-70585	NM_017766	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chrX.47178720.-	chrX	47178720	47178721	-	0	NA	Intergenic	AluSq2|SINE|Alu	51279	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr4.1358112.-	chr4	1358112	1358113	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17008	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr10.6985538.-	chr10	6985538	6985539	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163978	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr19.33965512.-	chr19	33965512	33965513	-	0	NA	"intron (NM_001166057, intron 5 of 12)"	AluSx4|SINE|Alu	-47287	NM_001166057	5184	Hs.36473	NM_000285	ENSG00000124299	PEPD	PROLIDASE	peptidase D	protein-coding
chr19.10406358.+	chr19	10406358	10406359	+	0	NA	"intron (NM_003259, intron 10 of 10)"	CpG-12885	5703	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr9.107727053.-	chr9	107727053	107727054	-	0	NA	Intergenic	AluYa5|SINE|Alu	36526	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr3.102973954.+	chr3	102973954	102973955	+	0	NA	Intergenic	SVA_D|Other|Other	820095	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr18.74408695.+	chr18	74408695	74408696	+	0	NA	Intergenic	AluY|SINE|Alu	125556	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr19.53096855.+	chr19	53096855	53096856	+	0	NA	Intergenic	SVA_D|Other|Other	-3082	NR_023311	7696	Hs.373648	NM_003438		ZNF137P	ZNF137|pHZ-30	"zinc finger protein 137, pseudogene"	pseudo
chr12.86658497.-	chr12	86658497	86658498	-	0	NA	"intron (NM_013244, intron 3 of 6)"	MER52A|LTR|ERV1	-288232	NR_039710	100616215		NR_039710	ENSG00000264402	MIR548AL	-	microRNA 548al	miscRNA
chrX.11749433.-	chrX	11749433	11749434	-	0	NA	Intergenic	AluSx|SINE|Alu	26845	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr15.101419457.+	chr15	101419457	101419458	+	0	NA	promoter-TSS (NM_000693)	promoter-TSS (NM_000693)	-552	NM_000693	220	Hs.459538	NM_000693	ENSG00000184254	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	"aldehyde dehydrogenase 1 family, member A3"	protein-coding
chr16.75395274.-	chr16	75395274	75395275	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluSz|SINE|Alu	-72113	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
chr12.116724252.+	chr12	116724252	116724253	+	0	NA	Intergenic	AluY|SINE|Alu	-9261	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chrX.12171165.+	chrX	12171165	12171166	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14580	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chr17.64230390.-	chr17	64230390	64230391	-	0	NA	Intergenic	AluYc|SINE|Alu	4834	NM_000042	350	Hs.445358	NM_000042	ENSG00000091583	APOH	B2G1|B2GP1|BG	apolipoprotein H (beta-2-glycoprotein I)	protein-coding
chr17.4900510.-	chr17	4900510	4900511	-	0	NA	promoter-TSS (NM_006612)	promoter-TSS (NM_006612)	-395	NM_213726	388324	Hs.658926	NM_001167985	ENSG00000196388	INCA1	-	"inhibitor of CDK, cyclin A1 interacting protein 1"	protein-coding
chr7.36338580.-	chr7	36338580	36338581	-	0	NA	"intron (NM_030636, intron 7 of 7)"	"intron (NM_030636, intron 7 of 7)"	-68202	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr16.85285089.+	chr16	85285089	85285090	+	0	NA	Intergenic	Intergenic	-31475	NR_038859	197196	Hs.679002	NR_038859	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	miscRNA
chr16.75395277.-	chr16	75395277	75395278	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluSz|SINE|Alu	-72110	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
chr9.105850376.+	chr9	105850376	105850377	+	0	NA	Intergenic	AluYc|SINE|Alu	92783	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr3.31533152.+	chr3	31533152	31533153	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41339	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr10.133869268.+	chr10	133869268	133869269	+	0	NA	Intergenic	Intergenic	-49045	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr9.127626453.-	chr9	127626453	127626454	-	0	NA	Intergenic	Intergenic	2213	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr12.67941953.-	chr12	67941953	67941954	-	0	NA	Intergenic	AluY|SINE|Alu	100559	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr17.73900862.+	chr17	73900862	73900863	+	0	NA	"intron (NM_032478, intron 1 of 8)"	CpG-11134	319	NM_032478	64978	Hs.442609	NM_032478	ENSG00000204316	MRPL38	L38MT|MRP-L3|MRP-L38|RPML3	mitochondrial ribosomal protein L38	protein-coding
chr7.73470107.-	chr7	73470107	73470108	-	0	NA	"intron (NM_001081753, intron 19 of 30)"	AluSz6|SINE|Alu	-27680	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr21.37914558.-	chr21	37914558	37914559	-	0	NA	"intron (NM_001146077, intron 1 of 2)"	AluSg4|SINE|Alu	-559	NM_001146078	23562	Hs.741857	NM_001146077	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
chr19.19594704.+	chr19	19594704	19594705	+	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	31765	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr14.97183903.-	chr14	97183903	97183904	-	0	NA	Intergenic	AluY|SINE|Alu	79781	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr14.23517065.-	chr14	23517065	23517066	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5689	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chrX.53123336.+	chrX	53123336	53123337	+	0	NA	Intergenic	CpG	11794	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.1993069.+	chr16	1993069	1993070	+	0	NA	"intron (NM_016332, intron 1 of 3)"	CpG	225	NM_016332	51734	Hs.655346	NM_016332	ENSG00000198736	MSRB1	SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
chrM.15755.-	chrM	15755	15756	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.112051636.+	chr12	112051636	112051637	+	0	NA	Intergenic	AluY|SINE|Alu	-14156	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chr18.11971490.+	chr18	11971490	11971491	+	0	NA	Intergenic	AluSx|SINE|Alu	-9937	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr16.16013176.-	chr16	16013176	16013177	-	0	NA	Intergenic	AluY|SINE|Alu	30258	NM_004996	4363	Hs.391464	NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	"ATP-binding cassette, sub-family C (CFTR/MRP), member 1"	protein-coding
chr12.8552724.+	chr12	8552724	8552725	+	0	NA	Intergenic	AluY|SINE|Alu	-9376	NR_024420	389634	Hs.434403	NM_001012988	ENSG00000226091	LOC389634	-	uncharacterized LOC389634	miscRNA
chr12.33592697.+	chr12	33592697	33592698	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	57	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr10.64708105.-	chr10	64708105	64708106	-	0	NA	Intergenic	SVA_E|Other|Other	129178	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr5.170687170.-	chr5	170687170	170687171	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49118	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr14.106359725.-	chr14	106359725	106359726	-	0	NA	Intergenic	Intergenic	24113	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr5.89746526.-	chr5	89746526	89746527	-	0	NA	Intergenic	AluSz|SINE|Alu	-24059	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr16.17658468.-	chr16	17658468	17658469	-	0	NA	Intergenic	AluJb|SINE|Alu	93730	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr7.100797593.+	chr7	100797593	100797594	+	0	NA	promoter-TSS (NM_001283)	promoter-TSS (NM_001283)	-93	NM_001283	1174	Hs.730952	NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|MEDNIK|SIGMA1A|WUGSC:H_DJ0747G18.2	"adaptor-related protein complex 1, sigma 1 subunit"	protein-coding
chrX.53808328.+	chrX	53808328	53808329	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94631	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr16.89117860.+	chr16	89117860	89117861	+	0	NA	Intergenic	Intergenic	-42357	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr6.34857473.+	chr6	34857473	34857474	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	435	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr16.375284.+	chr16	375284	375285	+	0	NA	"intron (NM_003502, intron 2 of 10)"	CpG	27392	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr11.70346716.+	chr11	70346716	70346717	+	0	NA	"intron (NM_012309, intron 17 of 22)"	"intron (NM_012309, intron 17 of 22)"	102104	NM_138565	2017	Hs.596164	NM_001184740	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
chr17.46187031.-	chr17	46187031	46187032	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2084	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr16.13534811.+	chr16	13534811	13534812	+	0	NA	Intergenic	Intergenic	-479203	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr10.59351194.-	chr10	59351194	59351195	-	0	NA	Intergenic	AluY|SINE|Alu	286875	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr5.52316772.+	chr5	52316772	52316773	+	0	NA	"intron (NR_073107, intron 1 of 28)"	AluSx|SINE|Alu	31616	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	"integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)"	protein-coding
chr5.154071101.+	chr5	154071101	154071102	+	0	NA	Intergenic	Intergenic	-21361	NM_015315	23367	Hs.292078	NM_033551	ENSG00000155506	LARP1	LARP	"La ribonucleoprotein domain family, member 1"	protein-coding
chr18.77244865.-	chr18	77244865	77244866	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84539	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr20.57372806.-	chr20	57372806	57372807	-	0	NA	Intergenic	HAL1|LINE|L1	-19943	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr5.116126629.-	chr5	116126629	116126630	-	0	NA	Intergenic	AluY|SINE|Alu	216078	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr8.7414122.+	chr8	7414122	7414123	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2504	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr3.28951256.+	chr3	28951256	28951257	+	0	NA	Intergenic	AluY|SINE|Alu	334487	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr3.126207250.-	chr3	126207250	126207251	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12488	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr10.123791062.+	chr10	123791062	123791063	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42373	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr17.8892456.-	chr17	8892456	8892457	-	0	NA	Intergenic	AluSp|SINE|Alu	23427	NM_001142633	23533	Hs.738684	NM_001142633	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	"phosphoinositide-3-kinase, regulatory subunit 5"	protein-coding
chr2.170666377.+	chr2	170666377	170666378	+	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	11055	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr9.6807797.-	chr9	6807797	6807798	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50156	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr4.8629366.+	chr4	8629366	8629367	+	0	NA	Intergenic	AluSx1|SINE|Alu	34979	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chrX.136083616.-	chrX	136083616	136083617	-	0	NA	Intergenic	SVA_D|Other|Other	-30217	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
chr14.102577003.+	chr14	102577003	102577004	+	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	-23491	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr3.51705370.-	chr3	51705370	51705371	-	0	NA	promoter-TSS (NM_001243725)	promoter-TSS (NM_001243725)	-80	NM_001243725	51368	Hs.517864	NM_001129884	ENSG00000164081	TEX264	SIG11|ZSIG11	testis expressed 264	protein-coding
chr14.105618904.-	chr14	105618904	105618905	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16257	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr2.237068264.-	chr2	237068264	237068265	-	0	NA	Intergenic	CpG	-8388	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr22.18839315.+	chr22	18839315	18839316	+	0	NA	Intergenic	Intergenic	-54421	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chrX.136649635.-	chrX	136649635	136649636	-	0	NA	"exon (NM_003413, exon 1 of 3)"	"exon (NM_003413, exon 1 of 3)"	-1289	NM_003413	7547	Hs.111227	NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
chr2.202092549.+	chr2	202092549	202092550	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5617	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr9.92897085.+	chr9	92897085	92897086	+	0	NA	Intergenic	AluY|SINE|Alu	-93304	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr11.14913479.+	chr11	14913479	14913480	+	0	NA	"intron (NM_024514, intron 1 of 4)"	CpG	272	NM_024514	120227	Hs.371427	NM_024514	ENSG00000186104	CYP2R1	-	"cytochrome P450, family 2, subfamily R, polypeptide 1"	protein-coding
chr5.131831879.-	chr5	131831879	131831880	-	0	NA	Intergenic	Intergenic	5414	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr1.248840088.+	chr1	248840088	248840089	+	0	NA	Intergenic	SVA_D|Other|Other	5517	NM_001004734	401994	Hs.449973	NM_001004734	ENSG00000189181	OR14I1	OR5BU1|OR5BU1P	"olfactory receptor, family 14, subfamily I, member 1"	protein-coding
chr1.101786733.-	chr1	101786733	101786734	-	0	NA	Intergenic	AluY|SINE|Alu	-19718	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr8.128328728.-	chr8	128328728	128328729	-	0	NA	Intergenic	Intergenic	99129	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr16.30960901.-	chr16	30960901	30960902	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-496	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr17.2731926.-	chr17	2731926	2731927	-	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	-32194	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr19.51222924.-	chr19	51222924	51222925	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	2729	NM_016148	50944	Hs.274255	NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
chr6.11537995.+	chr6	11537995	11537996	+	0	NA	promoter-TSS (NM_001100829)	promoter-TSS (NM_001100829)	-465	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
chr5.14460443.+	chr5	14460443	14460444	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121448	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr19.34248492.-	chr19	34248492	34248493	-	0	NA	"intron (NM_022467, intron 2 of 3)"	(GAAA)n|Simple_repeat|Simple_repeat	39259	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr12.122110538.-	chr12	122110538	122110539	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	2978	NM_173855	283385	Hs.434154	NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
chr1.114299612.+	chr1	114299612	114299613	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2165	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr4.43368666.+	chr4	43368666	43368667	+	0	NA	Intergenic	AluY|SINE|Alu	473383	NM_001080476	389207	Hs.162559	NM_001080476	ENSG00000215203	GRXCR1	DFNB25	"glutaredoxin, cysteine rich 1"	protein-coding
chr9.137200958.-	chr9	137200958	137200959	-	0	NA	Intergenic	Intergenic	17358	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr13.25859690.-	chr13	25859690	25859691	-	0	NA	"intron (NM_004685, intron 1 of 13)"	AluSx1|SINE|Alu	-2014	NM_004685	9107	Hs.643702	NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
chr17.38239320.-	chr17	38239320	38239321	-	0	NA	"intron (NM_199334, intron 4 of 8)"	AluY|SINE|Alu	-17658	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr17.76206904.+	chr17	76206904	76206905	+	0	NA	Intergenic	AluY|SINE|Alu	-3373	NM_001012271	332	Hs.514527	NM_001012270	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
chr7.99869476.+	chr7	99869476	99869477	+	0	NA	"non-coding (NR_028039, exon 1 of 8)"	"non-coding (NR_028039, exon 1 of 8)"	379	NR_028038	352954	Hs.556063	NM_178831	ENSG00000160844	GATS	STAG3OS	"GATS, stromal antigen 3 opposite strand"	protein-coding
chr6.88118034.+	chr6	88118034	88118035	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	344	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr15.81293321.+	chr15	81293321	81293322	+	0	NA	promoter-TSS (NM_022566)	promoter-TSS (NM_022566)	26	NM_022566	59274	Hs.513071	NM_022566	ENSG00000140406	MESDC1	-	mesoderm development candidate 1	protein-coding
chr19.12606205.+	chr19	12606205	12606206	+	0	NA	Intergenic	CpG	-10573	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr6.158244501.+	chr6	158244501	158244502	+	0	NA	"intron (NM_016224, intron 1 of 17)"	CpG	207	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	MST155|MSTP155|SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
chr7.1286209.+	chr7	1286209	1286210	+	0	NA	Intergenic	CpG	13555	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr16.86989479.+	chr16	86989479	86989480	+	0	NA	Intergenic	Intergenic	361547	NM_001256917	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr11.130731869.+	chr11	130731869	130731870	+	0	NA	Intergenic	Intergenic	54513	NM_014758	399979	Hs.444024	NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding
chr19.22288017.+	chr19	22288017	22288018	+	0	NA	Intergenic	SVA_C|Other|Other	52751	NM_033468	113835	Hs.283900	NM_033468	ENSG00000197134	ZNF257	BMZF-4|BMZF4	zinc finger protein 257	protein-coding
chr14.102983843.-	chr14	102983843	102983844	-	0	NA	Intergenic	CpG	7715	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr20.55110028.-	chr20	55110028	55110029	-	0	NA	"intron (NM_001013646, intron 1 of 1)"	AluSp|SINE|Alu	-1726	NM_001013646	388799	Hs.287759	NM_001013646	ENSG00000213714	FAM209B	C20orf107|dJ1153D9.4	"family with sequence similarity 209, member B"	protein-coding
chr7.62940010.-	chr7	62940010	62940011	-	0	NA	Intergenic	AluYf4|SINE|Alu	80591	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr6.93408714.+	chr6	93408714	93408715	+	0	NA	Intergenic	AluY|SINE|Alu	720586	NM_004440	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK3|HEK11	EPH receptor A7	protein-coding
chr8.38894822.+	chr8	38894822	38894823	+	0	NA	"intron (NR_027638, intron 11 of 20)"	AluYc3|SINE|Alu	40317	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
chr19.33776967.-	chr19	33776967	33776968	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16463	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr2.205410087.-	chr2	205410087	205410088	-	0	NA	promoter-TSS (NM_057177)	promoter-TSS (NM_057177)	429	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 partitioning defective 3 homolog B (C. elegans)	protein-coding
chr9.139071852.-	chr9	139071852	139071853	-	0	NA	Intergenic	Intergenic	-23152	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr15.55741334.+	chr15	55741334	55741335	+	0	NA	"intron (NR_037923, intron 5 of 15)"	AluSq2|SINE|Alu	40611	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr8.104851056.-	chr8	104851056	104851057	-	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	-19640	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr1.153961813.+	chr1	153961813	153961814	+	0	NA	Intergenic	AluY|SINE|Alu	-1426	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr16.89034102.-	chr16	89034102	89034103	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9402	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr4.55034952.+	chr4	55034952	55034953	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60312	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr15.30396176.+	chr15	30396176	30396177	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	241	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr16.89752989.+	chr16	89752989	89752990	+	0	NA	promoter-TSS (NR_027702)	promoter-TSS (NR_027702)	-87	NM_001098533	8558	Hs.699177	NM_001098533	ENSG00000185324	CDK10	PISSLRE	cyclin-dependent kinase 10	protein-coding
chr18.22497789.+	chr18	22497789	22497790	+	0	NA	Intergenic	Intergenic	289643	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LOC729950	-	uncharacterized LOC729950	miscRNA
chr7.1474487.-	chr7	1474487	1474488	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24622	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr3.60261983.-	chr3	60261983	60261984	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluY|SINE|Alu	-975150	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr19.18794733.-	chr19	18794733	18794734	-	0	NA	"intron (NM_015321, intron 1 of 13)"	CpG	-308	NM_001098482	23373	Hs.371096	NM_025021	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
chr17.4435098.+	chr17	4435098	4435099	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23583	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr16.11747040.-	chr16	11747040	11747041	-	0	NA	Intergenic	AluSx1|SINE|Alu	15249	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chrM.6385.+	chrM	6385	6386	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr5.1770143.-	chr5	1770143	1770144	-	0	NA	Intergenic	L1MB5|LINE|L1	-29813	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr9.8858121.+	chr9	8858121	8858122	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124175	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr17.960250.+	chr17	960250	960251	+	0	NA	"exon (NM_021962, exon 13 of 23)"	"exon (NM_021962, exon 13 of 23)"	22136	NR_046393	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr13.103088636.-	chr13	103088636	103088637	-	0	NA	Intergenic	AluY|SINE|Alu	34512	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr5.86907774.+	chr5	86907774	86907775	+	0	NA	Intergenic	AluY|SINE|Alu	-198924	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr17.26336736.-	chr17	26336736	26336737	-	0	NA	Intergenic	AluSz|SINE|Alu	32952	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr11.3224469.+	chr11	3224469	3224470	+	0	NA	Intergenic	Intergenic	-15093	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr22.18839304.+	chr22	18839304	18839305	+	0	NA	Intergenic	Intergenic	-54432	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr6.148944902.-	chr6	148944902	148944903	-	0	NA	Intergenic	AluYk4|SINE|Alu	123369	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl-2-sulfotransferase	protein-coding
chr19.2034140.-	chr19	2034140	2034141	-	0	NA	Intergenic	L1MB7|LINE|L1	-17103	NM_199054	2872	Hs.515032	NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAP kinase interacting serine/threonine kinase 2	protein-coding
chr12.120959524.-	chr12	120959524	120959525	-	0	NA	"intron (NM_032314, intron 2 of 6)"	"intron (NM_032314, intron 2 of 6)"	-7440	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr1.2457740.-	chr1	2457740	2457741	-	0	NA	"intron (NM_018216, intron 1 of 18)"	CpG	-295	NM_018216	55229	Hs.26156	NM_018216	ENSG00000157881	PANK4	-	pantothenate kinase 4	protein-coding
chr16.65697058.+	chr16	65697058	65697059	+	0	NA	Intergenic	AluY|SINE|Alu	-86855	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LOC283867	-	uncharacterized LOC283867	miscRNA
chr17.79427780.-	chr17	79427780	79427781	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9566	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr7.2966816.-	chr7	2966816	2966817	-	0	NA	"intron (NM_032415, intron 13 of 24)"	"intron (NM_032415, intron 13 of 24)"	82857	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr6.170396301.+	chr6	170396301	170396302	+	0	NA	Intergenic	Intergenic	175356	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr5.1067401.+	chr5	1067401	1067402	+	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	-4312	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr19.5560613.-	chr19	5560613	5560614	-	0	NA	"non-coding (NR_027064, exon 3 of 3)"	"non-coding (NR_027064, exon 3 of 3)"	-7392	NR_027064	257000	Hs.515575	NR_027064	ENSG00000223573	TINCR	LINC00036|NCRNA00036|PLAC2	tissue differentiation-inducing non-protein coding RNA	miscRNA
chr19.4435248.+	chr19	4435248	4435249	+	0	NA	"intron (NM_005483, intron 13 of 14)"	AluYc|SINE|Alu	-10727	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	-	microRNA 4746	miscRNA
chr10.104678245.-	chr10	104678245	104678246	-	0	NA	"exon (NM_017649, exon 1 of 8)"	"exon (NM_017649, exon 1 of 8)"	-170	NM_199076	54805	Hs.643509	NM_017649	ENSG00000148842	CNNM2	ACDP2	cyclin M2	protein-coding
chr19.18180402.+	chr19	18180402	18180403	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17295	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr13.87732443.-	chr13	87732443	87732444	-	0	NA	Intergenic	MER52A|LTR|ERV1	-538552	NR_039722	100616182		NR_039722	ENSG00000266052	MIR4500	-	microRNA 4500	miscRNA
chr8.123206113.+	chr8	123206113	123206114	+	0	NA	Intergenic	AluYk4|SINE|Alu	-552483	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
chr2.109985558.-	chr2	109985558	109985559	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55477	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr16.1845107.+	chr16	1845107	1845108	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-198	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chrX.112142839.-	chrX	112142839	112142840	-	0	NA	Intergenic	AluY|SINE|Alu	58796	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr19.11877926.+	chr19	11877926	11877927	+	0	NA	"5' UTR (NM_152355, exon 1 of 4)"	"5' UTR (NM_152355, exon 1 of 4)"	111	NM_152355	126068	Hs.675132	NM_152355	ENSG00000197044	ZNF441	-	zinc finger protein 441	protein-coding
chr14.54174633.-	chr14	54174633	54174634	-	0	NA	Intergenic	AluSp|SINE|Alu	-240569	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	miscRNA
chr6.170055448.+	chr6	170055448	170055449	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46711	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr4.133021286.+	chr4	133021286	133021287	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1049184	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr9.105365736.-	chr9	105365736	105365737	-	0	NA	Intergenic	SVA_B|Other|Other	391857	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr15.41865538.+	chr15	41865538	41865539	+	0	NA	"exon (NM_006293, exon 17 of 19)"	"exon (NM_006293, exon 17 of 19)"	14318	NM_006293	7301	Hs.381282	NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|RSE|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
chr1.200707969.-	chr1	200707969	200707970	-	0	NA	promoter-TSS (NM_203459)	promoter-TSS (NM_203459)	717	NM_203459	23271	Hs.23585	NM_203459	ENSG00000118200	CAMSAP2	CAMSAP1L1	"calmodulin regulated spectrin-associated protein family, member 2"	protein-coding
chr12.101954441.+	chr12	101954441	101954442	+	0	NA	Intergenic	AluSx|SINE|Alu	-34268	NM_001254721	4604	Hs.654589	NM_001254718	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	"myosin binding protein C, slow type"	protein-coding
chr17.79564765.+	chr17	79564765	79564766	+	0	NA	"intron (NM_017921, intron 9 of 16)"	AluSp|SINE|Alu	39373	NM_017921	55666	Hs.464333	NM_017921	ENSG00000182446	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
chr1.8837716.+	chr1	8837716	8837717	+	0	NA	"intron (NM_001042681, intron 1 of 22)"	AluY|SINE|Alu	39983	NM_012102	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr1.153574066.+	chr1	153574066	153574067	+	0	NA	Intergenic	AluY|SINE|Alu	11448	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr14.21741109.-	chr14	21741109	21741110	-	0	NA	Intergenic	AluSx1|SINE|Alu	3471	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chrX.23801537.-	chrX	23801537	23801538	-	0	NA	"intron (NR_027783, intron 1 of 6)"	CpG	-262	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr10.104238477.-	chr10	104238477	104238478	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17307	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr2.16600689.+	chr2	16600689	16600690	+	0	NA	Intergenic	AluY|SINE|Alu	246445	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	"family with sequence similarity 49, member A"	protein-coding
chr17.810071.-	chr17	810071	810072	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42720	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr9.108210398.+	chr9	108210398	108210399	+	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	73	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr16.88968506.-	chr16	88968506	88968507	-	0	NA	"intron (NM_005187, intron 1 of 11)"	MER5A|DNA|hAT-Charlie	35438	NM_001080487	390748	Hs.730522	NM_001080487	ENSG00000205022	PABPN1L	PABPNL1|ePABP2	"poly(A) binding protein, nuclear 1-like (cytoplasmic)"	protein-coding
chr22.17719099.+	chr22	17719099	17719100	+	0	NA	Intergenic	AluSg|SINE|Alu	-28320	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr16.88333461.-	chr16	88333461	88333462	-	0	NA	Intergenic	Intergenic	160418	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr18.76189784.+	chr18	76189784	76189785	+	0	NA	Intergenic	CpG	-550491	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr17.47363974.-	chr17	47363974	47363975	-	0	NA	Intergenic	AluSx|SINE|Alu	-38369	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr5.1137797.+	chr5	1137797	1137798	+	0	NA	Intergenic	Intergenic	-25625	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr12.12847387.+	chr12	12847387	12847388	+	0	NA	"intron (NM_006143, intron 2 of 3)"	AluY|SINE|Alu	1734	NM_006143	2842	Hs.657862	NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
chr10.133016169.-	chr10	133016169	133016170	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93815	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr22.26439739.+	chr22	26439739	26439740	+	0	NA	Intergenic	AluSx3|SINE|Alu	-125701	NM_001184773	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr12.34492680.+	chr12	34492680	34492681	+	0	NA	Intergenic	GSATII|Satellite|centr	317464	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.17924667.+	chr5	17924667	17924668	+	0	NA	Intergenic	AluY|SINE|Alu	-537248	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr10.108027469.-	chr10	108027469	108027470	-	0	NA	Intergenic	LTR1D|LTR|ERV1	-896997	NM_001206570	114815	Hs.591915	NM_001013031	ENSG00000108018	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chr11.45810281.+	chr11	45810281	45810282	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15342	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr17.77746696.+	chr17	77746696	77746697	+	0	NA	Intergenic	Intergenic	-5281	NM_005189	84733	Hs.368410	NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox homolog 2	protein-coding
chr7.5244746.-	chr7	5244746	5244747	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9154	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr9.7934822.+	chr9	7934822	7934823	+	0	NA	Intergenic	AluY|SINE|Alu	-135023	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr7.960378.-	chr7	960378	960379	-	0	NA	"intron (NM_006869, intron 3 of 10)"	"intron (NM_006869, intron 3 of 10)"	-33911	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chrX.19862939.+	chrX	19862939	19862940	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42805	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr20.5616826.+	chr20	5616826	5616827	+	0	NA	Intergenic	Intergenic	-25154	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	protein-coding
chr13.65723899.+	chr13	65723899	65723900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	1412331	NR_002171	283491	Hs.694575	NR_002171		OR7E156P	-	"olfactory receptor, family 7, subfamily E, member 156 pseudogene"	pseudo
chr2.129491295.+	chr2	129491295	129491296	+	0	NA	Intergenic	Intergenic	-415124	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr20.17960310.+	chr20	17960310	17960311	+	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	10548	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr8.142696537.+	chr8	142696537	142696538	+	0	NA	Intergenic	Intergenic	-179207	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr17.40576561.-	chr17	40576561	40576562	-	0	NA	Intergenic	AluSx|SINE|Alu	1223	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
chr2.119479930.+	chr2	119479930	119479931	+	0	NA	Intergenic	Intergenic	125829	NM_001426	2019	Hs.271977	NM_001426	ENSG00000163064	EN1	-	engrailed homeobox 1	protein-coding
chr9.14830609.+	chr9	14830609	14830610	+	0	NA	"intron (NM_144966, intron 11 of 37)"	"intron (NM_144966, intron 11 of 37)"	-51078	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr1.109995470.+	chr1	109995470	109995471	+	0	NA	Intergenic	AluY|SINE|Alu	-13630	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr16.29250455.+	chr16	29250455	29250456	+	0	NA	Intergenic	AluY|SINE|Alu	-63153	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr16.70660461.+	chr16	70660461	70660462	+	0	NA	"intron (NM_001172772, intron 1 of 6)"	AluSq2|SINE|Alu	2566	NM_001172772	146433	Hs.744161	NM_001172771	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
chr12.118079844.+	chr12	118079844	118079845	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280237	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr5.2007701.+	chr5	2007701	2007702	+	0	NA	Intergenic	CpG	-124821	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr11.617542.+	chr11	617542	617543	+	0	NA	"exon (NM_001171968, exon 15 of 15)"	"exon (NM_001171968, exon 15 of 15)"	-1543	NM_001572	3665	Hs.166120	NM_001572	ENSG00000185507	IRF7	IRF-7H|IRF7A	interferon regulatory factor 7	protein-coding
chr2.90482944.-	chr2	90482944	90482945	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365031	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr11.118672109.+	chr11	118672109	118672110	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10137	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr15.57662508.+	chr15	57662508	57662509	+	0	NA	Intergenic	AluSx|SINE|Alu	-6195	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr8.3501033.+	chr8	3501033	3501034	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351295	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr19.267130.+	chr19	267130	267131	+	0	NA	Intergenic	CpG	24039	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr20.61925860.-	chr20	61925860	61925861	-	0	NA	"intron (NM_020882, intron 1 of 35)"	"intron (NM_020882, intron 1 of 35)"	-1322	NM_020882	57642	Hs.271285	NM_020882	ENSG00000101203	COL20A1	bA261N11.4	"collagen, type XX, alpha 1"	protein-coding
chr3.98624735.+	chr3	98624735	98624736	+	0	NA	Intergenic	AluY|SINE|Alu	-4202	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr6.126112001.+	chr6	126112001	126112002	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	92	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.157198775.+	chr2	157198775	157198776	+	0	NA	Intergenic	CpG	-9488	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr4.8629370.+	chr4	8629370	8629371	+	0	NA	Intergenic	AluSx1|SINE|Alu	34983	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr19.16869724.-	chr19	16869724	16869725	-	0	NA	"intron (NM_001007525, intron 6 of 18)"	AluSg|SINE|Alu	-38937	NM_001007525	284434	Hs.406014	NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
chr8.104645086.+	chr8	104645086	104645087	+	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	132110	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr16.12210407.-	chr16	12210407	12210408	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139805	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr11.47459675.+	chr11	47459675	47459676	+	0	NA	"intron (NM_032645, intron 5 of 5)"	"intron (NM_032645, intron 5 of 5)"	11055	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
chr5.138944070.+	chr5	138944070	138944071	+	0	NA	"intron (NM_181838, intron 2 of 7)"	AluSx1|SINE|Alu	3319	NM_181838	7322	Hs.108332	NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
chr9.116102453.-	chr9	116102453	116102454	-	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	-167	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr9.127532553.+	chr9	127532553	127532554	+	0	NA	"intron (NM_001489, intron 1 of 9)"	CpG	1023	NM_033334	2649	Hs.586460	NM_001489	ENSG00000148200	NR6A1	GCNF|GCNF1|NR61|RTR	"nuclear receptor subfamily 6, group A, member 1"	protein-coding
chr12.133328167.+	chr12	133328167	133328168	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10284	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr13.20328831.-	chr13	20328831	20328832	-	0	NA	"intron (NR_044998, intron 3 of 7)"	AluSx|SINE|Alu	-28328	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr2.61306989.+	chr2	61306989	61306990	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13626	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr20.4583324.+	chr20	4583324	4583325	+	0	NA	Intergenic	Intergenic	-83473	NM_001080121	5621	Hs.721670	NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
chr4.1689737.+	chr4	1689737	1689738	+	0	NA	Intergenic	AluY|SINE|Alu	-3749	NM_001174070	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr17.47363972.+	chr17	47363972	47363973	+	0	NA	Intergenic	AluSx|SINE|Alu	38367	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr2.68031702.+	chr2	68031702	68031703	+	0	NA	Intergenic	AluY|SINE|Alu	258457	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr22.43238137.-	chr22	43238137	43238138	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15271	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr1.151741998.+	chr1	151741998	151741999	+	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	2867	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr1.21062902.-	chr1	21062902	21062903	-	0	NA	Intergenic	AluSp|SINE|Alu	3769	NM_001103160	400745	Hs.591522	NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
chr12.50448243.-	chr12	50448243	50448244	-	0	NA	Intergenic	AluSx|SINE|Alu	3177	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr14.51521339.-	chr14	51521339	51521340	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41083	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr8.67618044.+	chr8	67618044	67618045	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6609	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr9.137028519.-	chr9	137028519	137028520	-	0	NA	Intergenic	L2b|LINE|L2	-1167	NR_023344	100151684	Hs.545589	NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	"RNA, U6atac small nuclear (U12-dependent splicing)"	snRNA
chr20.18441245.+	chr20	18441245	18441246	+	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	6584	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr9.131013037.+	chr9	131013037	131013038	+	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	-5728	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr17.48631001.-	chr17	48631001	48631002	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6551	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr5.150947074.+	chr5	150947074	150947075	+	0	NA	"exon (NM_001447, exon 1 of 23)"	"exon (NM_001447, exon 1 of 23)"	1431	NM_001447	2196	Hs.591255	NM_001447	ENSG00000086570	FAT2	CDHF8|CDHR9|HFAT2|MEGF1	FAT tumor suppressor homolog 2 (Drosophila)	protein-coding
chr1.27876477.-	chr1	27876477	27876478	-	0	NA	"exon (NM_001029882, exon 6 of 7)"	"exon (NM_001029882, exon 6 of 7)"	-53666	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	CL23945|DJ159A19.3|RP1-159A19.1	"AT hook, DNA binding motif, containing 1"	protein-coding
chr10.120937542.-	chr10	120937542	120937543	-	0	NA	"intron (NM_014098, intron 1 of 6)"	AluJb|SINE|Alu	-803	NM_014098	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr12.106533459.+	chr12	106533459	106533460	+	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	352	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr7.149157217.-	chr7	149157217	149157218	-	0	NA	"intron (NM_015694, intron 1 of 5)"	CpG	-836	NM_015694	27153	Hs.38512	NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
chr12.112051635.+	chr12	112051635	112051636	+	0	NA	Intergenic	AluY|SINE|Alu	-14155	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chr12.49479713.+	chr12	49479713	49479714	+	0	NA	Intergenic	AluSq|SINE|Alu	8889	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chr6.141000370.-	chr6	141000370	141000371	-	0	NA	Intergenic	AluY|SINE|Alu	4581	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr8.111696902.-	chr8	111696902	111696903	-	0	NA	Intergenic	AluY|SINE|Alu	709943	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr2.110631863.+	chr2	110631863	110631864	+	0	NA	Intergenic	AluY|SINE|Alu	-24146	NR_027467	96626	Hs.535619	NM_033514	ENSG00000256977	LIMS3	PINCH-3	LIM and senescent cell antigen-like domains 3	protein-coding
chr9.71319950.+	chr9	71319950	71319951	+	0	NA	promoter-TSS (NM_003558)	promoter-TSS (NM_003558)	-666	NM_003558	8395	Hs.534371	NM_001031687	ENSG00000107242	PIP5K1B	MSS4|STM7	"phosphatidylinositol-4-phosphate 5-kinase, type I, beta"	protein-coding
chr7.95234920.+	chr7	95234920	95234921	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8995	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr1.54966366.-	chr1	54966366	54966367	-	0	NA	Intergenic	AluSq|SINE|Alu	47441	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr1.32122124.+	chr1	32122124	32122125	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11286	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr19.36254422.-	chr19	36254422	36254423	-	0	NA	"intron (NM_001039887, intron 5 of 11)"	AluY|SINE|Alu	-5378	NM_001039887	148137	Hs.527982	NM_144692	ENSG00000167595	C19orf55	-	chromosome 19 open reading frame 55	protein-coding
chr9.105850356.+	chr9	105850356	105850357	+	0	NA	Intergenic	AluYc|SINE|Alu	92763	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr8.3825574.-	chr8	3825574	3825575	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026754	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr19.5792118.+	chr19	5792118	5792119	+	0	NA	promoter-TSS (NM_001161619)	promoter-TSS (NM_001161619)	-869	NM_001161619	56931	Hs.284297	NM_001161619	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding
chr1.248394299.-	chr1	248394299	248394300	-	0	NA	Intergenic	AluSc8|SINE|Alu	7932	NM_017504	26245	Hs.381309	NM_017504	ENSG00000171180	OR2M4	HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100	"olfactory receptor, family 2, subfamily M, member 4"	protein-coding
chr1.92407895.+	chr1	92407895	92407896	+	0	NA	Intergenic	AluY|SINE|Alu	-7033	NM_207189	676	Hs.482520	NM_001242805	ENSG00000137948	BRDT	BRD6|CT9	"bromodomain, testis-specific"	protein-coding
chr22.39040985.-	chr22	39040985	39040986	-	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	-11649	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr17.27126606.-	chr17	27126606	27126607	-	0	NA	"intron (NM_001077498, intron 1 of 2)"	AluSc8|SINE|Alu	-43235	NM_001077498	55731	Hs.564533	NM_001077498	ENSG00000173065	FAM222B	C17orf63	"family with sequence similarity 222, member B"	protein-coding
chr16.56171992.-	chr16	56171992	56171993	-	0	NA	"intron (NR_027078, intron 2 of 4)"	AluJb|SINE|Alu	-53014	NR_027078	283856	Hs.707433	NR_027078	ENSG00000246379	LOC283856	-	uncharacterized LOC283856	miscRNA
chr3.172180155.+	chr3	172180155	172180156	+	0	NA	Intergenic	AluY|SINE|Alu	-13909	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr14.101679073.-	chr14	101679073	101679074	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142825	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr17.48628542.-	chr17	48628542	48628543	-	0	NA	"exon (NM_001258373, exon 12 of 17)"	"exon (NM_001258373, exon 12 of 17)"	-4092	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr10.133869249.-	chr10	133869249	133869250	-	0	NA	Intergenic	Intergenic	49064	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr16.22675491.-	chr16	22675491	22675492	-	0	NA	Intergenic	AluJr|SINE|Alu	54112	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr14.21741130.+	chr14	21741130	21741131	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3492	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr1.2375177.+	chr1	2375177	2375178	+	0	NA	Intergenic	CpG	-31167	NM_153818	5192	Hs.732228	NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
chr1.6565960.+	chr1	6565960	6565961	+	0	NA	"intron (NM_198681, intron 1 of 21)"	"intron (NM_198681, intron 1 of 21)"	-8476	NM_001042663	57449	Hs.619982	NM_001042663	ENSG00000171680	PLEKHG5	DSMA4|GEF720|Syx|Tech	"pleckstrin homology domain containing, family G (with RhoGef domain) member 5"	protein-coding
chr4.113182827.-	chr4	113182827	113182828	-	0	NA	"intron (NM_001128426, intron 5 of 8)"	"intron (NM_001128426, intron 5 of 8)"	-24232	NM_052864	92610	Hs.310640	NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF-interacting protein with forkhead-associated domain	protein-coding
chr2.120775597.-	chr2	120775597	120775598	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4812	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr7.140185528.-	chr7	140185528	140185529	-	0	NA	Intergenic	FLAM_C|SINE|Alu	6159	NM_013446	23608	Hs.490347	NM_001145125	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
chr3.176102503.+	chr3	176102503	176102504	+	0	NA	Intergenic	AluY|SINE|Alu	812545	NM_024665	79718	Hs.744001	NM_024665		TBL1XR1	C21|DC42|IRA1|TBLR1	transducin (beta)-like 1 X-linked receptor 1	protein-coding
chr19.11060469.+	chr19	11060469	11060470	+	0	NA	Intergenic	AluY|SINE|Alu	-11129	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr16.3641406.+	chr16	3641406	3641407	+	0	NA	"intron (NM_032444, intron 11 of 14)"	"intron (NM_032444, intron 11 of 14)"	-14014	NR_075083	197358	Hs.592091	NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	"NLR family, CARD domain containing 3"	protein-coding
chr3.93689454.+	chr3	93689454	93689455	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3480	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr18.48196288.-	chr18	48196288	48196289	-	0	NA	"intron (NM_002747, intron 2 of 5)"	AluY|SINE|Alu	-109804	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr1.567434.+	chr1	567434	567435	+	0	NA	Intergenic	Intergenic	54600	NM_001005224	26683	Hs.722724	NM_001005224	ENSG00000230178	OR4F3	-	"olfactory receptor, family 4, subfamily F, member 3"	protein-coding
chr22.18131950.+	chr22	18131950	18131951	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6478	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr17.3317545.-	chr17	3317545	3317546	-	0	NA	Intergenic	AluSc8|SINE|Alu	6317	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr9.114342829.-	chr9	114342829	114342830	-	0	NA	"intron (NM_001146108, intron 6 of 9)"	AluSp|SINE|Alu	-18882	NM_012212	22949	Hs.584864	NM_001146108	ENSG00000106853	PTGR1	LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
chr7.1001909.-	chr7	1001909	1001910	-	0	NA	Intergenic	Intergenic	7620	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr19.5409931.-	chr19	5409931	5409932	-	0	NA	Intergenic	AluY|SINE|Alu	45495	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr9.27541456.+	chr9	27541456	27541457	+	0	NA	Intergenic	AluY|SINE|Alu	-11606	NM_024761	79817	Hs.733701	NM_024761	ENSG00000120162	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
chr11.89400724.+	chr11	89400724	89400725	+	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	8259	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chrX.42145007.+	chrX	42145007	42145008	+	0	NA	Intergenic	SVA_D|Other|Other	-362720	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr6.46742427.+	chr6	46742427	46742428	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18667	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr12.51001737.+	chr12	51001737	51001738	+	0	NA	"intron (NM_173602, intron 1 of 37)"	AluSx|SINE|Alu	102969	NM_173602	57609	Hs.505516	NM_173602	ENSG00000066084	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
chr2.21484596.-	chr2	21484596	21484597	-	0	NA	Intergenic	Intergenic	217651	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr1.31727343.-	chr1	31727343	31727344	-	0	NA	Intergenic	AluY|SINE|Alu	14609	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr3.133504042.+	chr3	133504042	133504043	+	0	NA	"intron (NM_021203, intron 1 of 7)"	SVA_F|Other|Other	1165	NM_021203	58477	Hs.12152	NM_021203		SRPRB	APMCF1	"signal recognition particle receptor, B subunit"	protein-coding
chr2.134028760.+	chr2	134028760	134028761	+	0	NA	"intron (NM_207363, intron 4 of 19)"	AluY|SINE|Alu	297271	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
chr8.38592260.-	chr8	38592260	38592261	-	0	NA	"intron (NM_001146216, intron 1 of 12)"	"intron (NM_001146216, intron 1 of 12)"	-6556	NM_001146216	6867	Hs.279245	NM_001122824	ENSG00000147526	TACC1	Ga55	"transforming, acidic coiled-coil containing protein 1"	protein-coding
chr20.37779232.+	chr20	37779232	37779233	+	0	NA	Intergenic	Intergenic	74159	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	miscRNA
chr1.29184626.-	chr1	29184626	29184627	-	0	NA	"intron (NM_000911, intron 1 of 2)"	AluY|SINE|Alu	28977	NM_001166005	2035	Hs.712722	NM_001166005	ENSG00000159023	EPB41	4.1R|EL1|HE	"erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)"	protein-coding
chr1.9832297.+	chr1	9832297	9832298	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52253	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr9.69381708.-	chr9	69381708	69381709	-	0	NA	promoter-TSS (NM_001098805)	promoter-TSS (NM_001098805)	273	NM_001098805	728747	Hs.645502	NM_001098805	ENSG00000172014	ANKRD20A4	-	"ankyrin repeat domain 20 family, member A4"	protein-coding
chr21.47403501.+	chr21	47403501	47403502	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1838	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr3.124468923.+	chr3	124468923	124468924	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19710	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr19.18298162.+	chr19	18298162	18298163	+	0	NA	Intergenic	AluJr|SINE|Alu	-5878	NM_032683	84769	Hs.515254	NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial membrane protein-like 2	protein-coding
chr12.33024417.-	chr12	33024417	33024418	-	0	NA	"intron (NM_001005242, intron 3 of 12)"	AluSg|SINE|Alu	-25363	NM_004572	5318	Hs.164384	NM_001005242	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
chr14.101679069.+	chr14	101679069	101679070	+	0	NA	Intergenic	AluSx1|SINE|Alu	142821	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr16.181421.-	chr16	181421	181422	-	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	-7276	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr1.27023100.+	chr1	27023100	27023101	+	0	NA	"exon (NM_139135, exon 1 of 20)"	"exon (NM_139135, exon 1 of 20)"	578	NM_139135	8289	Hs.468972	NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT rich interactive domain 1A (SWI-like)	protein-coding
chr15.48470152.-	chr15	48470152	48470153	-	0	NA	"intron (NM_016132, intron 1 of 16)"	CpG	-406	NM_016132	50804	Hs.6638	NM_016132	ENSG00000104177	MYEF2	HsT18564|MEF-2|MST156|MSTP156	myelin expression factor 2	protein-coding
chr6.17739812.-	chr6	17739812	17739813	-	0	NA	Intergenic	AluSz6|SINE|Alu	32994	NM_005124	9972	Hs.718703	NM_005124	ENSG00000124789	NUP153	HNUP153|N153	nucleoporin 153kDa	protein-coding
chr2.34374950.+	chr2	34374950	34374951	+	0	NA	Intergenic	AluY|SINE|Alu	-421666	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr2.183903199.+	chr2	183903199	183903200	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	30	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr2.70416468.-	chr2	70416468	70416469	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1683	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr21.47838714.-	chr21	47838714	47838715	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40148	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr3.172180204.-	chr3	172180204	172180205	-	0	NA	Intergenic	AluY|SINE|Alu	13958	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr2.162164931.-	chr2	162164931	162164932	-	0	NA	"5' UTR (NM_005805, exon 1 of 12)"	"5' UTR (NM_005805, exon 1 of 12)"	-145	NM_005805	10213	Hs.740477	NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 14"	protein-coding
chr2.239047600.+	chr2	239047600	239047601	+	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	237	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr14.51521299.-	chr14	51521299	51521300	-	0	NA	"intron (NM_052978, intron 1 of 6)"	"intron (NM_052978, intron 1 of 6)"	-41123	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr4.1358088.+	chr4	1358088	1358089	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16984	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr9.2673177.+	chr9	2673177	2673178	+	0	NA	Intergenic	AluSc8|SINE|Alu	-44349	NM_133497	169522	Hs.740173	NM_133497	ENSG00000168263	KCNV2	KV11.1|Kv8.2|RCD3B	"potassium channel, subfamily V, member 2"	protein-coding
chr9.129229381.-	chr9	129229381	129229382	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56598	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr17.77746698.+	chr17	77746698	77746699	+	0	NA	Intergenic	Intergenic	-5279	NM_005189	84733	Hs.368410	NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox homolog 2	protein-coding
chr9.131099707.+	chr9	131099707	131099708	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3132	NM_005094	10999	Hs.656699	NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	"solute carrier family 27 (fatty acid transporter), member 4"	protein-coding
chr17.78974713.+	chr17	78974713	78974714	+	0	NA	TTS (NM_024591)	TTS (NM_024591)	9072	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr16.634290.+	chr16	634290	634291	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-5067	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr19.36426481.-	chr19	36426481	36426482	-	0	NA	Intergenic	AluSx1|SINE|Alu	1541	NM_024509	79414	Hs.143792	NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
chr5.176337828.+	chr5	176337828	176337829	+	0	NA	"intron (NM_001199297, intron 12 of 15)"	AluSp|SINE|Alu	-11495	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chrY.14990302.-	chrY	14990302	14990303	-	0	NA	Intergenic	SVA_D|Other|Other	25717	NM_001122665	8653	Hs.99120	NM_001122665	ENSG00000067048	DDX3Y	DBY	"DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked"	protein-coding
chr9.12352797.+	chr9	12352797	12352798	+	0	NA	Intergenic	AluY|SINE|Alu	-340589	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr14.101892571.+	chr14	101892571	101892572	+	0	NA	Intergenic	AluY|SINE|Alu	129442	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr9.132373312.+	chr9	132373312	132373313	+	0	NA	Intergenic	Intergenic	9743	NM_199350	375759	Hs.124223	NM_199350	ENSG00000179058	C9orf50	-	chromosome 9 open reading frame 50	protein-coding
chr6.169648517.-	chr6	169648517	169648518	-	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	-5620	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr19.3766710.-	chr19	3766710	3766711	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4045	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr6.151727645.+	chr6	151727645	151727646	+	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	-14968	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr17.41382354.+	chr17	41382354	41382355	+	0	NA	Intergenic	AluSx|SINE|Alu	-1292	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	miscRNA
chr17.79674474.+	chr17	79674474	79674475	+	0	NA	TTS (NM_002949)	TTS (NM_002949)	4074	NM_002949	6182	Hs.109059	NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12	mitochondrial ribosomal protein L12	protein-coding
chr3.193763061.-	chr3	193763061	193763062	-	0	NA	Intergenic	LTR16C|LTR|ERVL	41613	NR_033944	647323	Hs.652830	NR_033944	ENSG00000214146	LOC647323	-	uncharacterized LOC647323	miscRNA
chr5.86116404.+	chr5	86116404	86116405	+	0	NA	Intergenic	AluSp|SINE|Alu	200090	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr18.11971488.+	chr18	11971488	11971489	+	0	NA	Intergenic	AluSx|SINE|Alu	-9939	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr1.154218151.-	chr1	154218151	154218152	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	AluY|SINE|Alu	-24826	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr20.43342054.-	chr20	43342054	43342055	-	0	NA	Intergenic	AluSx|SINE|Alu	1831	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr5.1494530.-	chr5	1494530	1494531	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29546	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr22.24323648.+	chr22	24323648	24323649	+	0	NA	"intron (NM_000854, intron 2 of 4)"	AluY|SINE|Alu	1334	NM_000854	2953	Hs.654462	NM_000854	ENSG00000099984	GSTT2	GSTT2B	glutathione S-transferase theta 2	protein-coding
chr3.102973919.+	chr3	102973919	102973920	+	0	NA	Intergenic	SVA_D|Other|Other	820060	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr19.13497351.-	chr19	13497351	13497352	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119923	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr12.129892176.-	chr12	129892176	129892177	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496036	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chrM.143.+	chrM	143	144	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.28951305.+	chr3	28951305	28951306	+	0	NA	Intergenic	AluY|SINE|Alu	334536	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr10.8150601.-	chr10	8150601	8150602	-	0	NA	Intergenic	AluY|SINE|Alu	-53934	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr3.120458149.-	chr3	120458149	120458150	-	0	NA	"intron (NM_173825, intron 1 of 7)"	AluSg4|SINE|Alu	-3235	NM_173825	285282	Hs.444360	NM_173825	ENSG00000144840	RABL3	-	"RAB, member of RAS oncogene family-like 3"	protein-coding
chrX.133976860.+	chrX	133976860	133976861	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35637	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr8.120878239.-	chr8	120878239	120878240	-	0	NA	Intergenic	AluSx1|SINE|Alu	7661	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr2.10916530.-	chr2	10916530	10916531	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36430	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr8.120878172.+	chr8	120878172	120878173	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7728	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chrX.45463257.-	chrX	45463257	45463258	-	0	NA	Intergenic	AluSc8|SINE|Alu	126731	NR_102268	392452		NR_102268		LOC392452	-	mitochondrial fission factor pseudogene	pseudo
chr2.120775598.+	chr2	120775598	120775599	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4813	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr21.47838745.+	chr21	47838745	47838746	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40117	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr14.78273469.-	chr14	78273469	78273470	-	0	NA	"intron (NM_001142545, intron 1 of 9)"	AluYa5|SINE|Alu	-7043	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr1.212973171.+	chr1	212973171	212973172	+	0	NA	"intron (NM_001146170, intron 4 of 8)"	AluSz6|SINE|Alu	8001	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
chr19.11104345.+	chr19	11104345	11104346	+	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	9517	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr15.64856123.-	chr15	64856123	64856124	-	0	NA	"intron (NM_015042, intron 1 of 8)"	AluSx3|SINE|Alu	-64504	NM_015042	23060	Hs.696256	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
chr19.44199906.-	chr19	44199906	44199907	-	0	NA	Intergenic	AluSx|SINE|Alu	20308	NM_019612	56269	Hs.515444	NM_019612	ENSG00000124449	IRGC	CINEMA|IFGGE|IRGC1|Iigp5|R30953_1	"immunity-related GTPase family, cinema"	protein-coding
chr10.85783497.-	chr10	85783497	85783498	-	0	NA	Intergenic	AluY|SINE|Alu	115688	NM_014394	27069	Hs.352656	NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
chrX.144903011.-	chrX	144903011	144903012	-	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	-145	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr16.3755344.-	chr16	3755344	3755345	-	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	-12254	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr14.92023757.-	chr14	92023757	92023758	-	0	NA	Intergenic	SVA_D|Other|Other	47113	NM_032560	55671	Hs.533887	NM_017936	ENSG00000100796	SMEK1	FLFL1|KIAA2010|PP4R3A|smk-1|smk1	"SMEK homolog 1, suppressor of mek1 (Dictyostelium)"	protein-coding
chr12.84197218.+	chr12	84197218	84197219	+	0	NA	Intergenic	AluY|SINE|Alu	1109390	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr12.26964559.-	chr12	26964559	26964560	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21572	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr19.5409936.-	chr19	5409936	5409937	-	0	NA	Intergenic	AluY|SINE|Alu	45490	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr12.8057443.+	chr12	8057443	8057444	+	0	NA	Intergenic	AluSg7|SINE|Alu	31449	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr11.100596538.+	chr11	100596538	100596539	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38131	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr5.79942119.+	chr5	79942119	79942120	+	0	NA	"intron (NM_000791, intron 3 of 5)"	AluSg|SINE|Alu	4735	NM_001190470	100462981	Hs.666077	NM_001190470		MTRNR2L2	HN2	MT-RNR2-like 2	protein-coding
chr6.22057484.+	chr6	22057484	22057485	+	0	NA	"intron (NR_015410, intron 8 of 11)"	AluYc|SINE|Alu	89938	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	LOC729177	-	uncharacterized LOC729177	miscRNA
chr1.27394498.-	chr1	27394498	27394499	-	0	NA	Intergenic	AluY|SINE|Alu	55165	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr20.47640283.+	chr20	47640283	47640284	+	0	NA	"intron (NM_006420, intron 35 of 38)"	AluY|SINE|Alu	-22500	NM_001316	1434	Hs.90073	NM_001256135	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	CSE1 chromosome segregation 1-like (yeast)	protein-coding
chr13.95254007.+	chr13	95254007	95254008	+	0	NA	promoter-TSS (NM_180989)	promoter-TSS (NM_180989)	-97	NM_180989	160897	Hs.439363	NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
chr18.74505065.+	chr18	74505065	74505066	+	0	NA	Intergenic	Intergenic	29186	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr14.101693714.-	chr14	101693714	101693715	-	0	NA	Intergenic	Intergenic	-157466	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr4.123063386.-	chr4	123063386	123063387	-	0	NA	Intergenic	AluSg7|SINE|Alu	28372	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr2.38835403.+	chr2	38835403	38835404	+	0	NA	Intergenic	AluY|SINE|Alu	-5225	NM_001142650	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr14.71374395.+	chr14	71374395	71374396	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	273	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr14.58997900.-	chr14	58997900	58997901	-	0	NA	"intron (NM_001244191, intron 29 of 30)"	AluY|SINE|Alu	-91501	NM_001244193	9786	Hs.232532	NM_001244189	ENSG00000100578	KIAA0586	Talpid3	KIAA0586	protein-coding
chr17.65774789.+	chr17	65774789	65774790	+	0	NA	Intergenic	AluSx|SINE|Alu	38003	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chrY.13470900.-	chrY	13470900	13470901	-	0	NA	Intergenic	CpG	-1062489	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr7.158218590.+	chr7	158218590	158218591	+	0	NA	"intron (NM_130842, intron 1 of 21)"	CpG	106915	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr22.38213294.+	chr22	38213294	38213295	+	0	NA	TTS (NM_014291)	TTS (NM_014291)	-6095	NM_003614	8484	Hs.158353	NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
chr13.23713108.+	chr13	23713108	23713109	+	0	NA	Intergenic	AluY|SINE|Alu	-41952	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr22.38498880.+	chr22	38498880	38498881	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7796	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr6.163752487.-	chr6	163752487	163752488	-	0	NA	Intergenic	Intergenic	6982	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr7.100044663.-	chr7	100044663	100044664	-	0	NA	Intergenic	AluY|SINE|Alu	10569	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr19.589033.-	chr19	589033	589034	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	860	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr2.11817368.-	chr2	11817368	11817369	-	0	NA	promoter-TSS (NM_001261428)	promoter-TSS (NM_001261428)	337	NM_001261428	23175	Hs.739141	NM_001261427	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
chr2.173292728.+	chr2	173292728	173292729	+	0	NA	"intron (NM_000210, intron 1 of 25)"	CpG	414	NM_001079818	3655	Hs.133397	NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6B|VLA-6	"integrin, alpha 6"	protein-coding
chr17.79605469.+	chr17	79605469	79605470	+	0	NA	Intergenic	AluSx|SINE|Alu	-1331	NM_017921	55666	Hs.464333	NM_017921	ENSG00000182446	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
chr13.24099413.-	chr13	24099413	24099414	-	0	NA	Intergenic	Intergenic	45096	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr19.11060594.-	chr19	11060594	11060595	-	0	NA	Intergenic	AluY|SINE|Alu	11004	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr22.51142880.-	chr22	51142880	51142881	-	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	-29810	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr22.20137587.-	chr22	20137587	20137588	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	156	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr9.130734342.+	chr9	130734342	130734343	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8470	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr8.141523811.-	chr8	141523811	141523812	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1730	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr20.47588423.-	chr20	47588423	47588424	-	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	-50148	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr11.31560751.-	chr11	31560751	31560752	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29454	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr21.43109547.-	chr21	43109547	43109548	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10085	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr13.72731951.+	chr13	72731951	72731952	+	0	NA	Intergenic	AluY|SINE|Alu	-290621	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr4.100907290.+	chr4	100907290	100907291	+	0	NA	Intergenic	AluY|SINE|Alu	35654	NR_002799	256880	Hs.448554	NR_002799		LOC256880	-	uncharacterized LOC256880	miscRNA
chr12.120551543.-	chr12	120551543	120551544	-	0	NA	"intron (NM_001167606, intron 1 of 4)"	AluY|SINE|Alu	-3100	NM_001167606	11021	Hs.524788	NM_001167606	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	"RAB35, member RAS oncogene family"	protein-coding
chr10.4887332.+	chr10	4887332	4887333	+	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	18963	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr2.202767489.+	chr2	202767489	202767490	+	0	NA	Intergenic	AluY|SINE|Alu	96187	NM_001261436	65061	Hs.348711	NM_001261435	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin-dependent kinase 15	protein-coding
chr10.135104707.-	chr10	135104707	135104708	-	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	14300	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr5.166327485.+	chr5	166327485	166327486	+	0	NA	Intergenic	AluY|SINE|Alu	-384358	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr19.55855543.+	chr19	55855543	55855544	+	0	NA	"intron (NM_032701, intron 6 of 8)"	AluYc|SINE|Alu	4322	NM_032701	84787	Hs.590982	NM_032701	ENSG00000133247	SUV420H2	KMT5C	suppressor of variegation 4-20 homolog 2 (Drosophila)	protein-coding
chr2.236490305.-	chr2	236490305	236490306	-	0	NA	"intron (NM_001037131, intron 1 of 17)"	AluSx|SINE|Alu	-87572	NM_001244888	116987	Hs.435039	NM_001037131	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1"	protein-coding
chr18.56143324.+	chr18	56143324	56143325	+	0	NA	Intergenic	Intergenic	-24940	NR_039899	100616357		NR_039899		MIR3591	-	microRNA 3591	miscRNA
chr2.34374949.+	chr2	34374949	34374950	+	0	NA	Intergenic	AluY|SINE|Alu	-421665	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr4.955057.-	chr4	955057	955058	-	0	NA	"intron (NM_001347, intron 21 of 22)"	"intron (NM_001347, intron 21 of 22)"	-12291	NM_001347	1609	Hs.584858	NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	"diacylglycerol kinase, theta 110kDa"	protein-coding
chr6.46742385.-	chr6	46742385	46742386	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18709	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr3.82554718.+	chr3	82554718	82554719	+	0	NA	Intergenic	MER52A|LTR|ERV1	-743768	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr13.45463542.-	chr13	45463542	45463543	-	0	NA	Intergenic	AluSx|SINE|Alu	79776	NR_038433	144817	Hs.585616	NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	miscRNA
chr2.220408719.+	chr2	220408719	220408720	+	0	NA	promoter-TSS (NM_024536)	promoter-TSS (NM_024536)	-26	NM_001005209	130612	Hs.446664	NM_001005209	ENSG00000188760	TMEM198	TMEM198A	transmembrane protein 198	protein-coding
chr14.53476812.+	chr14	53476812	53476813	+	0	NA	Intergenic	AluSx|SINE|Alu	-58997	NM_006832	10979	Hs.509343	NM_001134999	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
chr13.111268326.-	chr13	111268326	111268327	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-395	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr12.38493559.+	chr12	38493559	38493560	+	0	NA	Intergenic	Intergenic	-216998	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr19.10041285.-	chr19	10041285	10041286	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5785	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr9.126762284.-	chr9	126762284	126762285	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	11605	NM_004789	9355	Hs.696425	NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
chr8.146024457.+	chr8	146024457	146024458	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	196	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr6.135502992.+	chr6	135502992	135502993	+	0	NA	"intron (NM_005375, intron 1 of 14)"	CpG	539	NM_001130172	4602	Hs.606320	NM_001130172	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	v-myb myeloblastosis viral oncogene homolog (avian)	protein-coding
chr9.120507387.+	chr9	120507387	120507388	+	0	NA	Intergenic	CpG	40934	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr6.141000389.-	chr6	141000389	141000390	-	0	NA	Intergenic	AluY|SINE|Alu	4562	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr9.88491267.+	chr9	88491267	88491268	+	0	NA	Intergenic	AluYc|SINE|Alu	-64790	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr2.136633758.+	chr2	136633758	136633759	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	289	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chrM.2916.+	chrM	2916	2917	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.48246800.+	chr19	48246800	48246801	+	0	NA	TTS (NM_014601)	TTS (NM_014601)	-1993	NM_015710	29997	Hs.421907	NM_015710	ENSG00000105373	GLTSCR2	PICT-1|PICT1	glioma tumor suppressor candidate region gene 2	protein-coding
chr14.100705707.+	chr14	100705707	100705708	+	0	NA	"exon (NM_003403, exon 1 of 5)"	"exon (NM_003403, exon 1 of 5)"	605	NM_003403	7528	Hs.603118	NM_003403		YY1	DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
chr2.43253929.+	chr2	43253929	43253930	+	0	NA	Intergenic	Intergenic	199816	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr19.1252671.-	chr19	1252671	1252672	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4119	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr9.86597299.-	chr9	86597299	86597300	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1662	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr2.27526292.-	chr2	27526292	27526293	-	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	-4838	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr15.73830890.-	chr15	73830890	73830891	-	0	NA	"intron (NM_001042367, intron 2 of 5)"	AluYk4|SINE|Alu	-94863	NM_012428	27020	Hs.187866	NM_001161363	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
chr20.62204091.-	chr20	62204091	62204092	-	0	NA	"5' UTR (NM_001037335, exon 2 of 20)"	"5' UTR (NM_001037335, exon 2 of 20)"	-1501	NM_001037335	85441	Hs.517180	NM_001037335	ENSG00000130589	HELZ2	PDIP-1|PRIC285	"helicase with zinc finger 2, transcriptional coactivator"	protein-coding
chr1.28703567.-	chr1	28703567	28703568	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7474	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr11.120082071.-	chr11	120082071	120082072	-	0	NA	"exon (NM_178507, exon 1 of 4)"	"exon (NM_178507, exon 1 of 4)"	-324	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr14.101193354.-	chr14	101193354	101193355	-	0	NA	"5' UTR (NM_003836, exon 1 of 5)"	"5' UTR (NM_003836, exon 1 of 5)"	-152	NM_003836	8788	Hs.533717	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta-like 1 homolog (Drosophila)	protein-coding
chr11.626441.+	chr11	626441	626442	+	0	NA	"exon (NM_021920, exon 4 of 4)"	"exon (NM_021920, exon 4 of 4)"	732	NM_021920	6343	Hs.632324	NM_021920		SCT	-	secretin	protein-coding
chr3.138566726.-	chr3	138566726	138566727	-	0	NA	Intergenic	AluY|SINE|Alu	88525	NM_006219	5291	Hs.239818	NM_001256045		PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	"phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta"	protein-coding
chr3.98624726.+	chr3	98624726	98624727	+	0	NA	Intergenic	AluY|SINE|Alu	-4193	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr9.34329749.-	chr9	34329749	34329750	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-245	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr9.135457667.-	chr9	135457667	135457668	-	0	NA	promoter-TSS (NM_020064)	promoter-TSS (NM_020064)	326	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH-like homeobox 1	protein-coding
chr20.50261066.+	chr20	50261066	50261067	+	0	NA	"intron (NM_006045, intron 14 of 27)"	AluY|SINE|Alu	-81696	NM_001258294	4773	Hs.744148	NM_001136021	ENSG00000101096	NFATC2	NFAT1|NFATP	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2"	protein-coding
chr9.137200976.-	chr9	137200976	137200977	-	0	NA	Intergenic	Intergenic	17340	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr8.141559341.-	chr8	141559341	141559342	-	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	-37260	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr12.133081835.-	chr12	133081835	133081836	-	0	NA	"intron (NM_001142641, intron 1 of 16)"	"intron (NM_001142641, intron 1 of 16)"	-14678	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr21.43109557.-	chr21	43109557	43109558	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10095	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chrM.3665.-	chrM	3665	3666	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.57177829.+	chr12	57177829	57177830	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20721	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr9.140500556.-	chr9	140500556	140500557	-	0	NA	"intron (NM_152285, intron 1 of 7)"	CpG	-460	NM_152285	92714	Hs.12999	NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
chr9.38829842.-	chr9	38829842	38829843	-	0	NA	Intergenic	AluY|SINE|Alu	-208757	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr13.23713126.-	chr13	23713126	23713127	-	0	NA	Intergenic	AluY|SINE|Alu	41934	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr19.43912439.-	chr19	43912439	43912440	-	0	NA	"intron (NM_031451, intron 4 of 8)"	CpG	6596	NM_001130011	83639	Hs.97978	NM_001130011	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|TES101RP	testis expressed 101	protein-coding
chr1.28703574.-	chr1	28703574	28703575	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7481	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr9.38829876.+	chr9	38829876	38829877	+	0	NA	Intergenic	AluY|SINE|Alu	208791	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr19.50670100.-	chr19	50670100	50670101	-	0	NA	Intergenic	AluSg|SINE|Alu	3562	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr7.99699456.+	chr7	99699456	99699457	+	0	NA	promoter-TSS (NM_005916)	promoter-TSS (NM_005916)	-29	NM_005916	4176	Hs.438720	NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146	minichromosome maintenance complex component 7	protein-coding
chr11.47270310.-	chr11	47270310	47270311	-	0	NA	promoter-TSS (NM_001130102)	promoter-TSS (NM_001130102)	139	NM_001130102	10062	Hs.438863	NM_001130101	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	"nuclear receptor subfamily 1, group H, member 3"	protein-coding
chr22.38336384.+	chr22	38336384	38336385	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13270	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr8.136968951.+	chr8	136968951	136968952	+	0	NA	Intergenic	Intergenic	499235	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	"KH domain containing, RNA binding, signal transduction associated 3"	protein-coding
chr22.49074864.+	chr22	49074864	49074865	+	0	NA	"intron (NM_015381, intron 2 of 3)"	C-rich|Low_complexity|Low_complexity	-101243	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	miscRNA
chr2.101214316.-	chr2	101214316	101214317	-	0	NA	Intergenic	AluY|SINE|Alu	-34898	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr3.84566267.+	chr3	84566267	84566268	+	0	NA	Intergenic	AluY|SINE|Alu	352459	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr2.128975984.+	chr2	128975984	128975985	+	0	NA	Intergenic	AluSg|SINE|Alu	100187	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr18.63211118.+	chr18	63211118	63211119	+	0	NA	Intergenic	AluY|SINE|Alu	-206370	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr10.6985550.-	chr10	6985550	6985551	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163990	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr3.1144606.-	chr3	1144606	1144607	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9977	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr5.1067377.+	chr5	1067377	1067378	+	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	-4288	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr19.38836205.+	chr19	38836205	38836206	+	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	9762	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr7.56888227.+	chr7	56888227	56888228	+	0	NA	Intergenic	Intergenic	61612	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr2.70972141.-	chr2	70972141	70972142	-	0	NA	"intron (NM_017482, intron 1 of 12)"	AluY|SINE|Alu	-22706	NM_001185054	119	Hs.188528	NM_001185054	ENSG00000075340	ADD2	ADDB	adducin 2 (beta)	protein-coding
chr16.67694410.-	chr16	67694410	67694411	-	0	NA	promoter-TSS (NM_016948)	promoter-TSS (NM_016948)	-308	NM_001082486	65057	Hs.78019	NM_001082486	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	adrenocortical dysplasia homolog (mouse)	protein-coding
chr2.21484564.+	chr2	21484564	21484565	+	0	NA	Intergenic	Intergenic	-217619	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr16.89331772.-	chr16	89331772	89331773	-	0	NA	Intergenic	Intergenic	-47661	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chr17.81047853.-	chr17	81047853	81047854	-	0	NA	"intron (NM_001004431, intron 2 of 3)"	CpG	-10286	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr3.122695615.+	chr3	122695615	122695616	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-634	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr15.91599307.+	chr15	91599307	91599308	+	0	NA	Intergenic	Intergenic	-33474	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr1.209280870.+	chr1	209280870	209280871	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-321298	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
chr4.1358097.-	chr4	1358097	1358098	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16993	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr9.4740766.-	chr9	4740766	4740767	-	0	NA	"intron (NM_001199853, intron 1 of 4)"	CpG	-543	NM_001199852	50808	Hs.493362	NM_001199852		AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
chr3.68753742.-	chr3	68753742	68753743	-	0	NA	Intergenic	AluSx3|SINE|Alu	-228019	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr11.68671236.-	chr11	68671236	68671237	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-67	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr2.168832209.+	chr2	168832209	168832210	+	0	NA	"intron (NM_013233, intron 16 of 17)"	AluY|SINE|Alu	157027	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	"UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1"	protein-coding
chr11.79058925.-	chr11	79058925	79058926	-	0	NA	"intron (NM_001098816, intron 1 of 33)"	AluYb9|SINE|Alu	-54228	NR_030598	100126333		NR_030598	ENSG00000211997	MIR708	MIRN708|hsa-mir-708	microRNA 708	miscRNA
chr1.32122137.-	chr1	32122137	32122138	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11299	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr10.95605042.-	chr10	95605042	95605043	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48688	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr16.87910775.-	chr16	87910775	87910776	-	0	NA	Intergenic	Intergenic	7675	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr18.63211158.+	chr18	63211158	63211159	+	0	NA	Intergenic	AluY|SINE|Alu	-206330	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr19.22288011.+	chr19	22288011	22288012	+	0	NA	Intergenic	SVA_C|Other|Other	52745	NM_033468	113835	Hs.283900	NM_033468	ENSG00000197134	ZNF257	BMZF-4|BMZF4	zinc finger protein 257	protein-coding
chr4.1358084.-	chr4	1358084	1358085	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16980	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr12.2161725.-	chr12	2161725	2161726	-	0	NA	promoter-TSS (NM_001129842)	promoter-TSS (NM_001129842)	691	NM_001129831	775	Hs.118262	NM_000719		CACNA1C	CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS	"calcium channel, voltage-dependent, L type, alpha 1C subunit"	protein-coding
chr20.17598354.-	chr20	17598354	17598355	-	0	NA	"intron (NM_004587, intron 20 of 24)"	"intron (NM_004587, intron 20 of 24)"	-47755	NM_001011546	11034	Hs.705996	NM_001011546	ENSG00000125868	DSTN	ACTDP|ADF|bA462D18.2	destrin (actin depolymerizing factor)	protein-coding
chrX.54241875.-	chrX	54241875	54241876	-	0	NA	"intron (NM_001002838, intron 21 of 22)"	SVA_B|Other|Other	32161	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr6.33811455.-	chr6	33811455	33811456	-	0	NA	Intergenic	LTR33|LTR|ERVL	39662	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chrX.13630781.-	chrX	13630781	13630782	-	0	NA	"intron (NM_001167890, intron 7 of 11)"	SVA_B|Other|Other	40526	NM_152634	170082	Hs.737398	NM_152634	ENSG00000176896	TCEANC	-	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding
chr22.51142890.+	chr22	51142890	51142891	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29820	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr19.6307853.-	chr19	6307853	6307854	-	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	-25787	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr11.33476394.-	chr11	33476394	33476395	-	0	NA	Intergenic	AluY|SINE|Alu	87483	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549-like	protein-coding
chr3.31574005.+	chr3	31574005	31574006	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-486	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr1.158150807.+	chr1	158150807	158150808	+	0	NA	"5' UTR (NM_001766, exon 2 of 7)"	"5' UTR (NM_001766, exon 2 of 7)"	1070	NM_001766	912	Hs.1799	NM_001766		CD1D	CD1A|R3	CD1d molecule	protein-coding
chr8.53013662.+	chr8	53013662	53013663	+	0	NA	Intergenic	Intergenic	-201927	NM_052937	115294	Hs.671268	NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chr11.4258903.+	chr11	4258903	4258904	+	0	NA	Intergenic	SVA_B|Other|Other	50521	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr10.69822233.+	chr10	69822233	69822234	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12870	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr1.43189472.-	chr1	43189472	43189473	-	0	NA	Intergenic	Intergenic	-16453	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr6.2221744.-	chr6	2221744	2221745	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24124	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr9.6858744.-	chr9	6858744	6858745	-	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	-101103	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr1.113825643.+	chr1	113825643	113825644	+	0	NA	Intergenic	Intergenic	-76768	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	miscRNA
chr3.172180222.-	chr3	172180222	172180223	-	0	NA	Intergenic	AluY|SINE|Alu	13976	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr2.136760847.+	chr2	136760847	136760848	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17625	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr5.168556381.+	chr5	168556381	168556382	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134317	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chr2.217746814.+	chr2	217746814	217746815	+	0	NA	Intergenic	AluSz|SINE|Alu	-22032	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr22.49447903.+	chr22	49447903	49447904	+	0	NA	Intergenic	CpG	185321	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr6.2221736.+	chr6	2221736	2221737	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24132	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr7.100436470.+	chr7	100436470	100436471	+	0	NA	Intergenic	LTR2|LTR|ERV1	-11327	NM_004444	2050	Hs.437008	NM_004444	ENSG00000196411	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
chr11.126081347.+	chr11	126081347	126081348	+	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	240	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr5.685098.-	chr5	685098	685099	-	0	NA	"intron (NM_007030, intron 1 of 3)"	"intron (NM_007030, intron 1 of 3)"	-8412	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr21.43109588.-	chr21	43109588	43109589	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10126	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr6.137113560.+	chr6	137113560	137113561	+	0	NA	promoter-TSS (NM_005923)	promoter-TSS (NM_005923)	96	NM_005923	4217	Hs.186486	NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
chr6.33500252.+	chr6	33500252	33500253	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47818	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr11.69451976.-	chr11	69451976	69451977	-	0	NA	Intergenic	CpG	3897	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr2.1562122.+	chr2	1562122	1562123	+	0	NA	Intergenic	AluY|SINE|Alu	143942	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr18.56887593.+	chr18	56887593	56887594	+	0	NA	"exon (NM_001012512, exon 1 of 3)"	"exon (NM_001012512, exon 1 of 3)"	193	NM_001012512	2922	Hs.153444	NM_001012512	ENSG00000134443	GRP	BN|GRP-10|preproGRP|proGRP	gastrin-releasing peptide	protein-coding
chr7.1474501.+	chr7	1474501	1474502	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24608	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr7.75420402.-	chr7	75420402	75420403	-	0	NA	Intergenic	AluSq2|SINE|Alu	1338	NM_006072	10344	Hs.131342	NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	chemokine (C-C motif) ligand 26	protein-coding
chr12.53369447.-	chr12	53369447	53369448	-	0	NA	Intergenic	Intergenic	25797	NM_001256293	3856	Hs.708445	NM_001256282	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
chr2.1166135.-	chr2	1166135	1166136	-	0	NA	"intron (NM_018968, intron 7 of 16)"	"intron (NM_018968, intron 7 of 16)"	-219581	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr11.44361789.+	chr11	44361789	44361790	+	0	NA	Intergenic	AluJb|SINE|Alu	-30073	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr6.4780656.+	chr6	4780656	4780657	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3976	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr9.137288463.-	chr9	137288463	137288464	-	0	NA	"intron (NM_002957, intron 1 of 9)"	"intron (NM_002957, intron 1 of 9)"	-17206	NR_039816	100616236		NR_039816		MIR4669	-	microRNA 4669	miscRNA
chr6.39016521.-	chr6	39016521	39016522	-	0	NA	promoter-TSS (NM_002062)	promoter-TSS (NM_002062)	36	NM_002062	2740	Hs.389103	NM_002062	ENSG00000112164	GLP1R	-	glucagon-like peptide 1 receptor	protein-coding
chrX.19862923.+	chrX	19862923	19862924	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42821	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr1.28969102.-	chr1	28969102	28969103	-	0	NA	"intron (NM_005644, intron 1 of 5)"	"intron (NM_005644, intron 1 of 5)"	-502	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chr13.111285566.+	chr13	111285566	111285567	+	0	NA	"intron (NR_040103, intron 5 of 9)"	LTR12C|LTR|ERV1	17635	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr10.135008723.-	chr10	135008723	135008724	-	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	-34752	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr9.20614279.+	chr9	20614279	20614280	+	0	NA	"intron (NM_004529, intron 2 of 10)"	AluSq2|SINE|Alu	8235	NM_004529	4300	Hs.591085	NM_004529		MLLT3	AF9|YEATS3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3"	protein-coding
chr4.177146912.-	chr4	177146912	177146913	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30090	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr14.39544124.+	chr14	39544124	39544125	+	0	NA	"intron (NM_006364, intron 8 of 19)"	AluY|SINE|Alu	28313	NM_006364	10484	Hs.272927	NM_006364	ENSG00000100934	SEC23A	CLSD	Sec23 homolog A (S. cerevisiae)	protein-coding
chr20.61885479.+	chr20	61885479	61885480	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	149	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr15.89714254.-	chr15	89714254	89714255	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50668	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr8.144124774.-	chr8	144124774	144124775	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4095	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr2.10163542.+	chr2	10163542	10163543	+	0	NA	Intergenic	Intergenic	-20140	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr7.72604350.+	chr7	72604350	72604351	+	0	NA	"intron (NR_003580, intron 9 of 23)"	AluY|SINE|Alu	-30324	NR_003186	654816	Hs.655201	NR_003186	ENSG00000182487	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B pseudogene	pseudo
chr10.95605039.-	chr10	95605039	95605040	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48691	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr20.62611067.+	chr20	62611067	62611068	+	0	NA	promoter-TSS (NM_080621)	promoter-TSS (NM_080621)	-72	NM_080621	140700	Hs.27189	NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
chr13.57860982.+	chr13	57860982	57860983	+	0	NA	Intergenic	LTR12C|LTR|ERV1	119651	NM_001130407	729250	Hs.525056	NM_001130407	ENSG00000234278	PRR20E	-	proline rich 20E	protein-coding
chr11.2884264.-	chr11	2884264	2884265	-	0	NA	Intergenic	CpG	6999	NR_024627	55539	Hs.127821	NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor (non-protein coding)	miscRNA
chr10.8534183.+	chr10	8534183	8534184	+	0	NA	Intergenic	AluY|SINE|Alu	437516	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr8.3500963.+	chr8	3500963	3500964	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351365	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr2.159651783.+	chr2	159651783	159651784	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-46	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chrX.81762790.+	chrX	81762790	81762791	+	0	NA	Intergenic	AluY|SINE|Alu	-1000479	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr5.179681955.-	chr5	179681955	179681956	-	0	NA	"intron (NM_139068, intron 5 of 11)"	AluY|SINE|Alu	-37116	NM_139070	5601	Hs.484371	NM_001135044	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
chr8.6644930.+	chr8	6644930	6644931	+	0	NA	Intergenic	AluY|SINE|Alu	-42169	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr6.152129545.+	chr6	152129545	152129546	+	0	NA	"intron (NM_001122742, intron 3 of 9)"	CpG	731	NM_000125	2099	Hs.208124	NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|Era|NR3A1	estrogen receptor 1	protein-coding
chr11.8302391.-	chr11	8302391	8302392	-	0	NA	Intergenic	AluY|SINE|Alu	12209	NM_001270428	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
chr7.5355996.+	chr7	5355996	5355997	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33435	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr2.38870510.-	chr2	38870510	38870511	-	0	NA	Intergenic	LTR12C|LTR|ERV1	22542	NM_138801	130589	Hs.435012	NM_138801	ENSG00000143891	GALM	IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
chr1.6094743.+	chr1	6094743	6094744	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	395	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chrX.18849775.+	chrX	18849775	18849776	+	0	NA	Intergenic	AluY|SINE|Alu	-58639	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr17.27717844.+	chr17	27717844	27717845	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-99	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr1.197418590.+	chr1	197418590	197418591	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181256	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr6.111924244.+	chr6	111924244	111924245	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3233	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr22.17046080.-	chr22	17046080	17046081	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-27620	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	"chaperonin containing TCP1, subunit 8 (theta)-like 2"	protein-coding
chr16.73461719.-	chr16	73461719	73461720	-	0	NA	Intergenic	AluSg|SINE|Alu	-41015	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr1.161879471.-	chr1	161879471	161879472	-	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	-114173	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr11.1158831.-	chr11	1158831	1158832	-	0	NA	Intergenic	Intergenic	-83956	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr2.87655685.-	chr2	87655685	87655686	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	99289	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr7.74447137.+	chr7	74447137	74447138	+	0	NA	Intergenic	AluSx1|SINE|Alu	42562	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr1.195321151.-	chr1	195321151	195321152	-	0	NA	Intergenic	AluY|SINE|Alu	-1230460	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr2.70199633.+	chr2	70199633	70199634	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10236	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr9.129229375.-	chr9	129229375	129229376	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56592	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr9.108210396.-	chr9	108210396	108210397	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-71	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr2.235953397.+	chr2	235953397	235953398	+	0	NA	"intron (NM_014521, intron 4 of 5)"	"intron (NM_014521, intron 4 of 5)"	92769	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr10.76198238.-	chr10	76198238	76198239	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-261991	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chrX.112142810.+	chrX	112142810	112142811	+	0	NA	Intergenic	AluY|SINE|Alu	-58767	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr21.47403495.-	chr21	47403495	47403496	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1832	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr19.19310139.+	chr19	19310139	19310140	+	0	NA	"intron (NM_134440, intron 8 of 8)"	"intron (NM_134440, intron 8 of 8)"	4099	NM_176880	126382	Hs.732708	NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2-associated protein	protein-coding
chr16.13701701.+	chr16	13701701	13701702	+	0	NA	Intergenic	AluSx|SINE|Alu	-312313	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr8.134309710.-	chr8	134309710	134309711	-	0	NA	promoter-TSS (NM_001135242)	promoter-TSS (NM_001135242)	163	NM_006096	10397	Hs.618002	NM_001135242	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
chr4.1358095.-	chr4	1358095	1358096	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16991	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chrY.9930532.-	chrY	9930532	9930533	-	0	NA	Intergenic	5S|rRNA|rRNA	-182125	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr15.20969951.+	chr15	20969951	20969952	+	0	NA	Intergenic	Intergenic	-8471	NR_027992	606	Hs.657985	NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
chr9.83481.-	chr9	83481	83482	-	0	NA	Intergenic	SVA_E|Other|Other	-34936	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr19.2435037.+	chr19	2435037	2435038	+	0	NA	"exon (NM_032737, exon 5 of 12)"	"exon (NM_032737, exon 5 of 12)"	-7162	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chrX.54371334.+	chrX	54371334	54371335	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13104	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chrX.69654774.+	chrX	69654774	69654775	+	0	NA	Intergenic	Intergenic	-9931	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr3.112807982.-	chr3	112807982	112807983	-	0	NA	Intergenic	AluYc|SINE|Alu	69427	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr5.114712366.+	chr5	114712366	114712367	+	0	NA	Intergenic	MIRb|SINE|MIR	-79908	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr1.32559990.+	chr1	32559990	32559991	+	0	NA	"intron (NM_018056, intron 6 of 8)"	AluSx4|SINE|Alu	-13654	NM_012316	23633	Hs.711019	NM_012316	ENSG00000025800	KPNA6	IPOA7|KPNA7	karyopherin alpha 6 (importin alpha 7)	protein-coding
chr10.97682951.-	chr10	97682951	97682952	-	0	NA	"intron (NM_001130446, intron 4 of 7)"	AluSp|SINE|Alu	-15229	NM_001130446	100127889	Hs.719076	NM_001130446	ENSG00000173088	C10orf131	bA690P14.3	chromosome 10 open reading frame 131	protein-coding
chr11.39116553.-	chr11	39116553	39116554	-	0	NA	Intergenic	AluSg|SINE|Alu	-1198127	NR_047674	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr7.152387457.+	chr7	152387457	152387458	+	0	NA	Intergenic	AluSz|SINE|Alu	-14207	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	-	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding
chr3.187872339.-	chr3	187872339	187872340	-	0	NA	promoter-TSS (NR_036497)	promoter-TSS (NR_036497)	463	NR_036497	339929	Hs.596639	NR_036497		LPP-AS2	-	LPP antisense RNA 2	miscRNA
chr1.197754599.-	chr1	197754599	197754600	-	0	NA	Intergenic	AluY|SINE|Alu	9976	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr21.31598704.+	chr21	31598704	31598705	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10235	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr22.38133624.+	chr22	38133624	38133625	+	0	NA	"intron (NM_001039141, intron 9 of 23)"	AluY|SINE|Alu	-8617	NM_138632	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr12.112426256.-	chr12	112426256	112426257	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24767	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr13.72731943.-	chr13	72731943	72731944	-	0	NA	Intergenic	AluY|SINE|Alu	290613	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr2.44380942.-	chr2	44380942	44380943	-	0	NA	Intergenic	AluY|SINE|Alu	15058	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr16.19125994.+	chr16	19125994	19125995	+	0	NA	"non-coding (NR_028028, exon 2 of 2)"	"non-coding (NR_028028, exon 2 of 2)"	740	NR_028028	162073	Hs.530899	NM_001034841	ENSG00000205730	ITPRIPL2	-	"inositol 1,4,5-trisphosphate receptor interacting protein-like 2"	protein-coding
chrM.7993.-	chrM	7993	7994	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr4.3540651.-	chr4	3540651	3540652	-	0	NA	Intergenic	SVA_D|Other|Other	6427	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr4.138974422.+	chr4	138974422	138974423	+	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	-35746	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr17.40316776.+	chr17	40316776	40316777	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9714	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr16.1821685.-	chr16	1821685	1821686	-	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	-25	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr11.100596537.-	chr11	100596537	100596538	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38130	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr3.43949894.-	chr3	43949894	43949895	-	0	NA	Intergenic	LTR16E1|LTR|ERVL	205810	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1	microRNA 138-1	miscRNA
chr10.123791080.+	chr10	123791080	123791081	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42391	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr11.119091822.+	chr11	119091822	119091823	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14836	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr2.230579328.-	chr2	230579328	230579329	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	42	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr13.72731946.-	chr13	72731946	72731947	-	0	NA	Intergenic	AluY|SINE|Alu	290616	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chrX.53123430.+	chrX	53123430	53123431	+	0	NA	Intergenic	CpG	11888	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr14.105242456.+	chr14	105242456	105242457	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17482	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr22.38498909.-	chr22	38498909	38498910	-	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	-7767	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr7.64198958.-	chr7	64198958	64198959	-	0	NA	Intergenic	SVA_D|Other|Other	55808	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr1.18518341.-	chr1	18518341	18518342	-	0	NA	"intron (NM_032880, intron 1 of 9)"	"intron (NM_032880, intron 1 of 9)"	-84101	NM_032880	84966	Hs.212511	NM_032880	ENSG00000117154	IGSF21	-	"immunoglobin superfamily, member 21"	protein-coding
chr8.22594721.+	chr8	22594721	22594722	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43906	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr1.17034298.+	chr1	17034298	17034299	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12354	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr1.195213209.+	chr1	195213209	195213210	+	0	NA	Intergenic	AluY|SINE|Alu	1338402	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr17.68536103.-	chr17	68536103	68536104	-	0	NA	Intergenic	AluSx3|SINE|Alu	-370427	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	"potassium inwardly-rectifying channel, subfamily J, member 2"	protein-coding
chr19.3220550.-	chr19	3220550	3220551	-	0	NA	Intergenic	AluSz|SINE|Alu	4151	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr4.166248605.+	chr4	166248605	166248606	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-213	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr2.109090602.+	chr2	109090602	109090603	+	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	25025	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr11.12932442.-	chr11	12932442	12932443	-	0	NA	"intron (NM_021961, intron 10 of 12)"	AluSx1|SINE|Alu	-78653	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LOC100506305	-	uncharacterized LOC100506305	miscRNA
chr9.19934401.+	chr9	19934401	19934402	+	0	NA	Intergenic	CpG	-147384	NM_020344	25769	Hs.738749	NM_001193288		SLC24A2	NCKX2	"solute carrier family 24 (sodium/potassium/calcium exchanger), member 2"	protein-coding
chr4.84865071.-	chr4	84865071	84865072	-	0	NA	Intergenic	SVA_D|Other|Other	-407601	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr15.75701800.-	chr15	75701800	75701801	-	0	NA	"intron (NM_001145357, intron 8 of 20)"	"intron (NM_001145357, intron 8 of 20)"	40832	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr12.132116782.+	chr12	132116782	132116783	+	0	NA	Intergenic	L1ME1|LINE|L1	-78850	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr12.122667597.-	chr12	122667597	122667598	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	70	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr11.47459671.-	chr11	47459671	47459672	-	0	NA	"intron (NM_032645, intron 5 of 5)"	"intron (NM_032645, intron 5 of 5)"	-11059	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
chr13.101312485.+	chr13	101312485	101312486	+	0	NA	"intron (NM_001079669, intron 4 of 17)"	AluSz|SINE|Alu	14618	NM_001079669	84899	Hs.190983	NM_001079669	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
chr5.75799096.+	chr5	75799096	75799097	+	0	NA	"intron (NM_006633, intron 2 of 35)"	AluSq|SINE|Alu	99947	NM_006633	10788	Hs.291030	NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
chr7.128141959.+	chr7	128141959	128141960	+	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	25176	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr15.27067569.-	chr15	27067569	27067570	-	0	NA	Intergenic	AluY|SINE|Alu	44297	NM_000810	2558	Hs.24969	NM_000810	ENSG00000186297	GABRA5	-	"gamma-aminobutyric acid (GABA) A receptor, alpha 5"	protein-coding
chr12.51785559.-	chr12	51785559	51785560	-	0	NA	promoter-TSS (NM_007210)	promoter-TSS (NM_007210)	359	NM_007210	11226	Hs.505575	NM_007210	ENSG00000139629	GALNT6	GALNAC-T6|GalNAcT6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)	protein-coding
chr20.32873730.+	chr20	32873730	32873731	+	0	NA	"intron (NM_000687, intron 8 of 9)"	AluY|SINE|Alu	17485	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr12.123755248.+	chr12	123755248	123755249	+	0	NA	promoter-TSS (NM_001270433)	promoter-TSS (NM_001270433)	401	NR_073008	8099	Hs.433201	NM_001270433	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin-dependent kinase 2 associated protein 1	protein-coding
chr7.150812727.+	chr7	150812727	150812728	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28901	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr18.47340527.+	chr18	47340527	47340528	+	0	NA	promoter-TSS (NM_006111)	promoter-TSS (NM_006111)	134	NR_003003	677769		NR_003003		SCARNA17	U91	small Cajal body-specific RNA 17	miscRNA
chr10.12223737.-	chr10	12223737	12223738	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14224	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr8.143373419.+	chr8	143373419	143373420	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93702	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr15.41674363.-	chr15	41674363	41674364	-	0	NA	Intergenic	SVA_F|Other|Other	-20295	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr16.81282906.-	chr16	81282906	81282907	-	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	-10610	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr14.103244202.-	chr14	103244202	103244203	-	0	NA	"intron (NM_003300, intron 1 of 10)"	(CGCGG)n|Simple_repeat|Simple_repeat	-386	NM_145725	7187	Hs.510528	NM_001199427	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor-associated factor 3	protein-coding
chr5.165696022.-	chr5	165696022	165696023	-	0	NA	Intergenic	AluY|SINE|Alu	1015821	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr13.25592834.+	chr13	25592834	25592835	+	0	NA	Intergenic	CpG	-50227	NR_026730	646405	Hs.620592	NR_026730		TPTE2P1	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudo
chr13.50177049.+	chr13	50177049	50177050	+	0	NA	Intergenic	AluY|SINE|Alu	-17330	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr16.48542721.-	chr16	48542721	48542722	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-101399	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
chr19.4065800.-	chr19	4065800	4065801	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1016	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chrX.54371375.-	chrX	54371375	54371376	-	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	-13063	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr15.68115738.+	chr15	68115738	68115739	+	0	NA	"intron (NM_001258024, intron 2 of 14)"	CpG	3696	NM_001258024	390598	Hs.451224	NM_001031807		SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
chr1.10727906.+	chr1	10727906	10727907	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128827	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr5.9328757.-	chr5	9328757	9328758	-	0	NA	"intron (NM_003966, intron 4 of 22)"	AluSq|SINE|Alu	-217476	NM_003966	9037	Hs.27621	NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A"	protein-coding
chr1.9832318.-	chr1	9832318	9832319	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52232	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr12.118556942.-	chr12	118556942	118556943	-	0	NA	Intergenic	AluSx|SINE|Alu	15132	NM_019086	54621	Hs.187624	NM_019086	ENSG00000176834	VSIG10	-	V-set and immunoglobulin domain containing 10	protein-coding
chr12.33592866.-	chr12	33592866	33592867	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	112	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chrM.9321.+	chrM	9321	9322	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.40696470.-	chr19	40696470	40696471	-	0	NA	Intergenic	AluSx|SINE|Alu	1181	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr8.6110652.+	chr8	6110652	6110653	+	0	NA	Intergenic	AluSc|SINE|Alu	153417	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	miscRNA
chr6.114067426.-	chr6	114067426	114067427	-	0	NA	Intergenic	AluY|SINE|Alu	111101	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr12.112407434.+	chr12	112407434	112407435	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43589	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chrX.48952510.-	chrX	48952510	48952511	-	0	NA	"intron (NM_007075, intron 2 of 11)"	AluY|SINE|Alu	-5549	NM_007075	11152	Hs.632807	NM_001029896	ENSG00000196998	WDR45	NBIA4|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
chr1.50884068.+	chr1	50884068	50884069	+	0	NA	"3' UTR (NM_032110, exon 3 of 3)"	"3' UTR (NM_032110, exon 3 of 3)"	5051	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT-like family A2	protein-coding
chr16.82671298.+	chr16	82671298	82671299	+	0	NA	"intron (NM_001220491, intron 1 of 4)"	AluY|SINE|Alu	10899	NM_001220488	1012	Hs.661776	NM_001220488	ENSG00000140945	CDH13	CDHH|P105	"cadherin 13, H-cadherin (heart)"	protein-coding
chr2.230579945.+	chr2	230579945	230579946	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-659	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr12.106606590.-	chr12	106606590	106606591	-	0	NA	Intergenic	L1PA7|LINE|L1	-35123	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr8.128328715.-	chr8	128328715	128328716	-	0	NA	Intergenic	Intergenic	99142	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr7.139162657.+	chr7	139162657	139162658	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5800	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr18.5524274.+	chr18	5524274	5524275	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19712	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr19.47628005.-	chr19	47628005	47628006	-	0	NA	Intergenic	AluY|SINE|Alu	6075	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr12.132623242.+	chr12	132623242	132623243	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5638	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr8.143615494.+	chr8	143615494	143615495	+	0	NA	"intron (NM_001702, intron 24 of 29)"	"intron (NM_001702, intron 24 of 29)"	70117	NM_001702	575	Hs.194654	NM_001702	ENSG00000181790	BAI1	GDAIF	brain-specific angiogenesis inhibitor 1	protein-coding
chr6.168395047.+	chr6	168395047	168395048	+	0	NA	Intergenic	AluSx|SINE|Alu	-17428	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr21.42046749.-	chr21	42046749	42046750	-	0	NA	"intron (NM_001389, intron 3 of 32)"	AluY|SINE|Alu	44056	NR_046774	100874326	Hs.679746	NR_046774		DSCAM-IT1	zag4	DSCAM intronic transcript 1 (non-protein coding)	miscRNA
chr2.240980330.+	chr2	240980330	240980331	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2069	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr7.95234883.+	chr7	95234883	95234884	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8958	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr7.149504167.-	chr7	149504167	149504168	-	0	NA	"intron (NM_198455, intron 60 of 109)"	"intron (NM_198455, intron 60 of 109)"	-31036	NM_198455	23145	Hs.632022	NM_198455		SSPO	SCO-spondin	SCO-spondin homolog (Bos taurus)	protein-coding
chr10.135031520.+	chr10	135031520	135031521	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12258	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr4.48016926.-	chr4	48016926	48016927	-	0	NA	Intergenic	AluY|SINE|Alu	1865	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr10.89762162.+	chr10	89762162	89762163	+	0	NA	Intergenic	AluSq2|SINE|Alu	138967	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
chr11.68671200.+	chr11	68671200	68671201	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	103	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr9.10974628.-	chr9	10974628	10974629	-	0	NA	Intergenic	L1PBa|LINE|L1	361905	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.3124562.+	chr7	3124562	3124563	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41053	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr2.194196033.+	chr2	194196033	194196034	+	0	NA	Intergenic	AluSp|SINE|Alu	581462	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071	"PCGEM1, prostate-specific transcript (non-protein coding)"	miscRNA
chr1.27595468.-	chr1	27595468	27595469	-	0	NA	"intron (NM_015023, intron 3 of 15)"	AluSx|SINE|Alu	-34461	NM_001276252	23038	Hs.469154	NM_001276252	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
chr14.104314346.-	chr14	104314346	104314347	-	0	NA	promoter-TSS (NM_015316)	promoter-TSS (NM_015316)	-288	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr21.46737228.+	chr21	46737228	46737229	+	0	NA	Intergenic	Intergenic	29261	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr14.33408055.+	chr14	33408055	33408056	+	0	NA	promoter-TSS (NM_001165893)	promoter-TSS (NM_001165893)	-404	NM_001164749	64067	Hs.675475	NM_001164749	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
chr2.240980342.+	chr2	240980342	240980343	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2057	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr20.39978513.+	chr20	39978513	39978514	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8953	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr19.31841649.-	chr19	31841649	31841650	-	0	NA	Intergenic	CpG-13437	1459	NM_020856	57616	Hs.278436	NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
chr17.25676751.-	chr17	25676751	25676752	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55645	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr20.42218542.+	chr20	42218542	42218543	+	0	NA	Intergenic	AluJb|SINE|Alu	-1037	NM_016004	51098	Hs.444332	NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1	intraflagellar transport 52 homolog (Chlamydomonas)	protein-coding
chr6.138984657.-	chr6	138984657	138984658	-	0	NA	Intergenic	AluSp|SINE|Alu	28148	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr5.2751873.+	chr5	2751873	2751874	+	0	NA	promoter-TSS (NM_178569)	promoter-TSS (NM_178569)	-104	NM_001134222	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr19.3220515.+	chr19	3220515	3220516	+	0	NA	Intergenic	AluSc|SINE|Alu	-4186	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr13.112597779.+	chr13	112597779	112597780	+	0	NA	Intergenic	MIRc|SINE|MIR	-124134	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr11.69957925.-	chr11	69957925	69957926	-	0	NA	"intron (NM_018043, intron 7 of 25)"	"intron (NM_018043, intron 7 of 25)"	-26409	NR_030691	55107	Hs.503074	NM_018043	ENSG00000131620	ANO1	DOG1|ORAOV2|TAOS2|TMEM16A	"anoctamin 1, calcium activated chloride channel"	protein-coding
chr3.102973889.-	chr3	102973889	102973890	-	0	NA	Intergenic	SVA_D|Other|Other	-820030	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr19.53979646.-	chr19	53979646	53979647	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8657	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr12.31226507.-	chr12	31226507	31226508	-	0	NA	promoter-TSS (NM_152438)	promoter-TSS (NM_152438)	272	NM_004399	1663	Hs.443960	NM_001257144	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding
chr6.333833.+	chr6	333833	333834	+	0	NA	"intron (NM_020185, intron 3 of 7)"	"intron (NM_020185, intron 3 of 7)"	41732	NM_020185	56940	Hs.29106	NM_020185		DUSP22	JKAP|JSP1|LMWDSP2|MKPX|VHX	dual specificity phosphatase 22	protein-coding
chr3.13876348.+	chr3	13876348	13876349	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45270	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr6.139853780.-	chr6	139853780	139853781	-	0	NA	Intergenic	AluY|SINE|Alu	58047	NR_033919	645434	Hs.666240	NR_033919		LOC645434	-	uncharacterized LOC645434	miscRNA
chr1.79749344.+	chr1	79749344	79749345	+	0	NA	Intergenic	AluSx|SINE|Alu	-276849	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr10.44870339.+	chr10	44870339	44870340	+	0	NA	TTS (NM_001033886)	TTS (NM_001033886)	10206	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr6.8388451.+	chr6	8388451	8388452	+	0	NA	Intergenic	LTR9|LTR|ERV1	47343	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr8.142011331.-	chr8	142011331	142011332	-	0	NA	promoter-TSS (NM_005607)	promoter-TSS (NM_005607)	-81	NM_153831	5747	Hs.395482	NM_001199649	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
chr5.91967072.-	chr5	91967072	91967073	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-939427	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr17.80050130.+	chr17	80050130	80050131	+	0	NA	"intron (NM_004104, intron 8 of 42)"	"intron (NM_004104, intron 8 of 42)"	5976	NM_004104	2194	Hs.83190	NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
chr5.176998679.+	chr5	176998679	176998680	+	0	NA	Intergenic	AluJo|SINE|Alu	-17131	NM_001190946	54540	Hs.484289	NM_019057	ENSG00000146067	FAM193B	IRIZIO	"family with sequence similarity 193, member B"	protein-coding
chr10.82345732.+	chr10	82345732	82345733	+	0	NA	"intron (NM_001145719, intron 3 of 6)"	LTR12C|LTR|ERV1	45157	NM_001145719	387694	Hs.147643	NM_001145719	ENSG00000178217	SH2D4B	-	SH2 domain containing 4B	protein-coding
chr10.120946058.+	chr10	120946058	120946059	+	0	NA	Intergenic	AluJb|SINE|Alu	-7713	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr21.46907003.-	chr21	46907003	46907004	-	0	NA	"intron (NM_030582, intron 15 of 41)"	"intron (NM_030582, intron 15 of 41)"	-31579	NM_030582	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr9.140918010.+	chr9	140918010	140918011	+	0	NA	"exon (NM_001243812, exon 19 of 46)"	"exon (NM_001243812, exon 19 of 46)"	-126555	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr11.638965.-	chr11	638965	638966	-	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	-1660	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr15.77590066.+	chr15	77590066	77590067	+	0	NA	"intron (NM_024776, intron 1 of 7)"	AluSc|SINE|Alu	-72320	NR_026813	81698	Hs.656938	NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	miscRNA
chr7.1542258.+	chr7	1542258	1542259	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1760	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr17.3792474.-	chr17	3792474	3792475	-	0	NA	"intron (NM_172207, intron 1 of 15)"	"intron (NM_172207, intron 1 of 15)"	-1563	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr11.66676645.+	chr11	66676645	66676646	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1305	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr16.634274.+	chr16	634274	634275	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-5083	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr1.97799054.-	chr1	97799054	97799055	-	0	NA	"intron (NM_000110, intron 16 of 22)"	"intron (NM_000110, intron 16 of 22)"	-237575	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr15.56465906.+	chr15	56465906	56465907	+	0	NA	"intron (NM_022841, intron 2 of 8)"	AluSq|SINE|Alu	69577	NM_022841	64864	Hs.282855	NM_022841	ENSG00000181827	RFX7	RFXDC2	"regulatory factor X, 7"	protein-coding
chr10.135075425.-	chr10	135075425	135075426	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14301	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr17.27896206.-	chr17	27896206	27896207	-	0	NA	"intron (NM_138349, intron 2 of 6)"	"intron (NM_138349, intron 2 of 6)"	-467	NM_138349	90313	Hs.514050	NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
chr7.33164255.-	chr7	33164255	33164256	-	0	NA	Intergenic	AluYf5|SINE|Alu	4897	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr4.85768679.-	chr4	85768679	85768680	-	0	NA	"intron (NM_014991, intron 5 of 67)"	AluSc8|SINE|Alu	-118865	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr7.64198984.+	chr7	64198984	64198985	+	0	NA	Intergenic	SVA_D|Other|Other	-55782	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr4.103422428.-	chr4	103422428	103422429	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	58	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr16.19394759.-	chr16	19394759	19394760	-	0	NA	Intergenic	Intergenic	27298	NM_001105249	79838	Hs.115838	NM_001105248	ENSG00000103534	TMC5	-	transmembrane channel-like 5	protein-coding
chr11.2213920.-	chr11	2213920	2213921	-	0	NA	Intergenic	Intergenic	-19627	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr22.46326767.+	chr22	46326767	46326768	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46241	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr3.49368439.+	chr3	49368439	49368440	+	0	NA	"intron (NM_001251877, intron 2 of 6)"	AluY|SINE|Alu	9097	NM_001251877	7375	Hs.403828	NM_001251877	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
chr4.103422419.+	chr4	103422419	103422420	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-67	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr2.131551989.-	chr2	131551989	131551990	-	0	NA	Intergenic	AluY|SINE|Alu	-38125	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr7.5595636.-	chr7	5595636	5595637	-	0	NA	Intergenic	CpG	25404	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr1.200904670.-	chr1	200904670	200904671	-	0	NA	Intergenic	AluSx|SINE|Alu	-40721	NM_001142569	55765	Hs.518997	NM_001142569	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
chr19.50033437.-	chr19	50033437	50033438	-	0	NA	"intron (NM_020650, intron 2 of 6)"	AluSx|SINE|Alu	-2562	NM_020650	57333	Hs.567550	NM_020650	ENSG00000142552	RCN3	RLP49	"reticulocalbin 3, EF-hand calcium binding domain"	protein-coding
chr13.31023956.-	chr13	31023956	31023957	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16125	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr17.6555227.+	chr17	6555227	6555228	+	0	NA	promoter-TSS (NM_016060)	promoter-TSS (NM_016060)	168	NM_001105520	388327	Hs.262480	NM_001105520		C17orf100	-	chromosome 17 open reading frame 100	protein-coding
chr1.218165410.+	chr1	218165410	218165411	+	0	NA	Intergenic	AluSq|SINE|Alu	99168	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr12.106606596.-	chr12	106606596	106606597	-	0	NA	Intergenic	L1PA7|LINE|L1	-35117	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr9.140024846.+	chr9	140024846	140024847	+	0	NA	Intergenic	CpG	-8763	NM_001185090	2902	Hs.558334	NM_000832	ENSG00000176884	GRIN1	GluN1|MRD8|NMDA1|NMDAR1|NR1	"glutamate receptor, ionotropic, N-methyl D-aspartate 1"	protein-coding
chr11.84019685.+	chr11	84019685	84019686	+	0	NA	"intron (NM_001142699, intron 7 of 27)"	LTR12C|LTR|ERV1	8697	NM_001206769	1740	Hs.367656	NM_001142699	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	"discs, large homolog 2 (Drosophila)"	protein-coding
chr11.68079806.+	chr11	68079806	68079807	+	0	NA	promoter-TSS (NM_002335)	promoter-TSS (NM_002335)	-302	NM_002335	4041	Hs.6347	NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
chr3.28951295.+	chr3	28951295	28951296	+	0	NA	Intergenic	AluY|SINE|Alu	334526	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr19.46987859.+	chr19	46987859	46987860	+	0	NA	"intron (NM_001205281, intron 3 of 3)"	AluSx|SINE|Alu	11310	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
chr5.86907793.+	chr5	86907793	86907794	+	0	NA	Intergenic	AluY|SINE|Alu	-198943	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr17.21825578.+	chr17	21825578	21825579	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	208	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr16.1228063.+	chr16	1228063	1228064	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24822	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chrX.29584330.-	chrX	29584330	29584331	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649345	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr19.3971088.+	chr19	3971088	3971089	+	0	NA	Intergenic	CpG	-1262	NM_001348	1613	Hs.631844	NM_001348	ENSG00000167657	DAPK3	ZIP|ZIPK	death-associated protein kinase 3	protein-coding
chr12.14679672.+	chr12	14679672	14679673	+	0	NA	"intron (NM_024829, intron 6 of 10)"	AluSp|SINE|Alu	41119	NM_024829	79887	Hs.131933	NM_024829		PLBD1	-	phospholipase B domain containing 1	protein-coding
chr10.129196000.+	chr10	129196000	129196001	+	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	-151613	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr12.120959438.+	chr12	120959438	120959439	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7526	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr4.26862245.-	chr4	26862245	26862246	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	68	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr3.57630951.-	chr3	57630951	57630952	-	0	NA	"intron (NM_152678, intron 11 of 19)"	AluSg|SINE|Alu	47736	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
chr10.122148863.-	chr10	122148863	122148864	-	0	NA	Intergenic	AluSx1|SINE|Alu	67603	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr3.88595880.-	chr3	88595880	88595881	-	0	NA	Intergenic	AluSc8|SINE|Alu	396864	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr13.66584773.+	chr13	66584773	66584774	+	0	NA	Intergenic	AluY|SINE|Alu	-814528	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr19.53979665.-	chr19	53979665	53979666	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8676	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr7.1798923.-	chr7	1798923	1798924	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50125	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr8.143695491.-	chr8	143695491	143695492	-	0	NA	"exon (NM_015193, exon 1 of 3)"	"exon (NM_015193, exon 1 of 3)"	-342	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr10.120937539.-	chr10	120937539	120937540	-	0	NA	"intron (NM_014098, intron 1 of 6)"	AluJb|SINE|Alu	-806	NM_014098	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr14.80915449.-	chr14	80915449	80915450	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218052	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr20.49473867.+	chr20	49473867	49473868	+	0	NA	"intron (NM_198799, intron 4 of 4)"	AluSp|SINE|Alu	62400	NM_001010974	55653	Hs.381178	NM_001010974	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
chr2.18277682.+	chr2	18277682	18277683	+	0	NA	Intergenic	AluY|SINE|Alu	217737	NM_002252	3790	Hs.414489	NM_002252	ENSG00000170745	KCNS3	KV9.3	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3"	protein-coding
chr15.93372481.-	chr15	93372481	93372482	-	0	NA	Intergenic	AluSg|SINE|Alu	-33767	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr5.24116785.-	chr5	24116785	24116786	-	0	NA	Intergenic	AluY|SINE|Alu	-528300	NM_006727	1008	Hs.92489	NM_006727	ENSG00000040731	CDH10	-	"cadherin 10, type 2 (T2-cadherin)"	protein-coding
chr20.4729618.-	chr20	4729618	4729619	-	0	NA	Intergenic	Intergenic	8304	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr5.128196982.+	chr5	128196982	128196983	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104228	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr7.961930.-	chr7	961930	961931	-	0	NA	"intron (NM_006869, intron 3 of 10)"	"intron (NM_006869, intron 3 of 10)"	-32359	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr13.115046856.+	chr13	115046856	115046857	+	0	NA	promoter-TSS (NM_080687)	promoter-TSS (NM_080687)	-203	NM_080687	65110	Hs.533855	NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding
chr2.27588399.-	chr2	27588399	27588400	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4520	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr15.37172804.-	chr15	37172804	37172805	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5930	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr12.52241373.-	chr12	52241373	52241374	-	0	NA	Intergenic	CpG	15672	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
chr7.12736920.+	chr7	12736920	12736921	+	0	NA	Intergenic	AluSg|SINE|Alu	10009	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr12.2384445.-	chr12	2384445	2384446	-	0	NA	"intron (NR_046769, intron 1 of 2)"	"intron (NR_046769, intron 1 of 2)"	-5503	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	miscRNA
chr16.88844364.+	chr16	88844364	88844365	+	0	NA	"intron (NM_001142864, intron 1 of 50)"	"intron (NM_001142864, intron 1 of 50)"	7008	NM_001142864	9780	Hs.592074	NM_001142864	ENSG00000103335	PIEZO1	FAM38A|Mib	piezo-type mechanosensitive ion channel component 1	protein-coding
chr7.1001916.-	chr7	1001916	1001917	-	0	NA	Intergenic	Intergenic	7627	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr17.80832355.+	chr17	80832355	80832356	+	0	NA	"intron (NM_005993, intron 14 of 38)"	"intron (NM_005993, intron 14 of 38)"	-34424	NM_024702	79755	Hs.653124	NM_024702	ENSG00000141579	ZNF750	ZFP750	zinc finger protein 750	protein-coding
chr19.14156280.-	chr19	14156280	14156281	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13691	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr12.92086121.+	chr12	92086121	92086122	+	0	NA	Intergenic	AluSx3|SINE|Alu	449368	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr9.83469.-	chr9	83469	83470	-	0	NA	Intergenic	SVA_E|Other|Other	-34948	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr20.34266479.-	chr20	34266479	34266480	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13601	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chrX.141491536.-	chrX	141491536	141491537	-	0	NA	Intergenic	AluY|SINE|Alu	198460	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr10.102153559.-	chr10	102153559	102153560	-	0	NA	Intergenic	AluSq2|SINE|Alu	-20226	NR_026762	90271	Hs.628088	NR_026762		LINC00263	C10orf75|NCRNA00263	long intergenic non-protein coding RNA 263	miscRNA
chr17.8625943.+	chr17	8625943	8625944	+	0	NA	Intergenic	AluY|SINE|Alu	22211	NM_144681	146849	Hs.121438	NM_001158261	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
chr11.61519956.+	chr11	61519956	61519957	+	0	NA	promoter-TSS (NM_001127392)	promoter-TSS (NM_001127392)	-165	NM_001127392	745	Hs.473109	NM_001127392	ENSG00000124920	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
chr8.23203397.+	chr8	23203397	23203398	+	0	NA	"intron (NM_002318, intron 3 of 13)"	AluY|SINE|Alu	9676	NR_038323	100507156	Hs.661130	NR_038323	ENSG00000253837	LOC100507156	-	uncharacterized LOC100507156	miscRNA
chr12.120554983.+	chr12	120554983	120554984	+	0	NA	promoter-TSS (NM_006861)	promoter-TSS (NM_006861)	-340	NM_006861	11021	Hs.524788	NM_001167606	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	"RAB35, member RAS oncogene family"	protein-coding
chr1.160239890.-	chr1	160239890	160239891	-	0	NA	Intergenic	AluJo|SINE|Alu	7540	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr12.123921368.-	chr12	123921368	123921369	-	0	NA	promoter-TSS (NM_145058)	promoter-TSS (NM_145058)	104	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr16.723840.+	chr16	723840	723841	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2235	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr6.121079721.-	chr6	121079721	121079722	-	0	NA	Intergenic	AluY|SINE|Alu	-575923	NM_152730	221322	Hs.121396	NM_152730	ENSG00000146350	C6orf170	BROMI|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	chromosome 6 open reading frame 170	protein-coding
chr6.170396273.+	chr6	170396273	170396274	+	0	NA	Intergenic	Intergenic	175384	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr7.158790520.-	chr7	158790520	158790521	-	0	NA	Intergenic	Intergenic	10525	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr12.56579284.-	chr12	56579284	56579285	-	0	NA	"intron (NM_003075, intron 3 of 27)"	AluSx1|SINE|Alu	-4067	NM_139067	6601	Hs.632717	NM_001130420		SMARCC2	BAF170|CRACC2|Rsc8	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2"	protein-coding
chr11.18211735.+	chr11	18211735	18211736	+	0	NA	Intergenic	AluSq2|SINE|Alu	17351	NM_054032	117196	Hs.632138	NM_054032	ENSG00000179817	MRGPRX4	GPCR|MRGX4|SNSR6	"MAS-related GPR, member X4"	protein-coding
chr9.138663345.-	chr9	138663345	138663346	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69314	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr18.72124188.+	chr18	72124188	72124189	+	0	NA	"intron (NM_001044369, intron 1 of 3)"	CpG	315	NM_001044369	125704	Hs.371690	NM_001044369	ENSG00000187773	FAM69C	C18orf51	"family with sequence similarity 69, member C"	protein-coding
chr2.10804199.+	chr2	10804199	10804200	+	0	NA	"intron (NM_001261392, intron 7 of 19)"	AluSx|SINE|Alu	25914	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr7.25057996.+	chr7	25057996	25057997	+	0	NA	Intergenic	SVA_F|Other|Other	-38236	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr17.78397564.-	chr17	78397564	78397565	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4346	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr7.532132.+	chr7	532132	532133	+	0	NA	Intergenic	Intergenic	27349	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr11.17756431.+	chr11	17756431	17756432	+	0	NA	Intergenic	CpG	-1064	NM_001112741	3746	Hs.552896	NM_001112741	ENSG00000129159	KCNC1	KV3.1|KV4|NGK2	"potassium voltage-gated channel, Shaw-related subfamily, member 1"	protein-coding
chr14.103801380.-	chr14	103801380	103801381	-	0	NA	"5' UTR (NM_183004, exon 1 of 11)"	"5' UTR (NM_183004, exon 1 of 11)"	-182	NM_183004	1983	Hs.741278	NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
chr2.217746780.+	chr2	217746780	217746781	+	0	NA	Intergenic	AluSz|SINE|Alu	-21998	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr1.158012611.-	chr1	158012611	158012612	-	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	-49548	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr2.120282021.-	chr2	120282021	120282022	-	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	-7	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chrX.63045994.-	chrX	63045994	63045995	-	0	NA	Intergenic	SVA_B|Other|Other	40027	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468	microRNA 1468	miscRNA
chr2.147734705.+	chr2	147734705	147734706	+	0	NA	Intergenic	AluSx3|SINE|Alu	390080	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	"poly(A) binding protein, cytoplasmic 1 pseudogene 2"	pseudo
chr22.42326104.+	chr22	42326104	42326105	+	0	NA	Intergenic	AluY|SINE|Alu	-3283	NM_052945	115650	Hs.344088	NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	"tumor necrosis factor receptor superfamily, member 13C"	protein-coding
chr2.92172362.+	chr2	92172362	92172363	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43203	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr11.86267754.-	chr11	86267754	86267755	-	0	NA	"intron (NM_001014811, intron 2 of 13)"	"intron (NM_001014811, intron 2 of 13)"	-115486	NM_001014811	10873	Hs.199743	NM_001014811	ENSG00000151376	ME3	NADP-ME	"malic enzyme 3, NADP(+)-dependent, mitochondrial"	protein-coding
chr2.175862720.+	chr2	175862720	175862721	+	0	NA	"intron (NR_038133, intron 1 of 11)"	AluSx3|SINE|Alu	7261	NM_001822	1123	Hs.380138	NM_001025201	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
chr7.13141842.-	chr7	13141842	13141843	-	0	NA	Intergenic	SVA_D|Other|Other	-414931	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr20.19955813.-	chr20	19955813	19955814	-	0	NA	"exon (NM_001242581, exon 8 of 12)"	"exon (NM_001242581, exon 8 of 12)"	42121	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr11.67759461.-	chr11	67759461	67759462	-	0	NA	"intron (NM_030930, intron 10 of 10)"	"intron (NM_030930, intron 10 of 10)"	-12132	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chr19.35418158.-	chr19	35418158	35418159	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-351	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr1.97029376.+	chr1	97029376	97029377	+	0	NA	Intergenic	AluSp|SINE|Alu	-157799	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr8.126398071.+	chr8	126398071	126398072	+	0	NA	Intergenic	Intergenic	-44492	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr12.94364475.-	chr12	94364475	94364476	-	0	NA	Intergenic	AluY|SINE|Alu	178024	NM_005761	10154	Hs.584845	NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
chr21.45243666.-	chr21	45243666	45243667	-	0	NA	Intergenic	Intergenic	11218	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr2.10916532.-	chr2	10916532	10916533	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36428	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr3.36494743.-	chr3	36494743	36494744	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72646	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr22.31732654.-	chr22	31732654	31732655	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9595	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr5.159429749.-	chr5	159429749	159429750	-	0	NA	Intergenic	AluSz|SINE|Alu	6431	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr13.28494177.+	chr13	28494177	28494178	+	0	NA	promoter-TSS (NM_000209)	promoter-TSS (NM_000209)	9	NM_000209	3651	Hs.32938	NM_000209	ENSG00000139515	PDX1	GSF|IDX-1|IPF1|IUF1|MODY4|PDX-1|STF-1	pancreatic and duodenal homeobox 1	protein-coding
chr8.43413630.+	chr8	43413630	43413631	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	266045	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr1.1374640.-	chr1	1374640	1374641	-	0	NA	"exon (NM_022834, exon 3 of 3)"	"exon (NM_022834, exon 3 of 3)"	-3737	NM_022834	64856	Hs.449009	NM_022834	ENSG00000179403	VWA1	WARP	von Willebrand factor A domain containing 1	protein-coding
chrX.53125833.+	chrX	53125833	53125834	+	0	NA	Intergenic	AluJb|SINE|Alu	14291	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chrY.8786237.-	chrY	8786237	8786238	-	0	NA	Intergenic	SVA_C|Other|Other	100814	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr14.102576998.+	chr14	102576998	102576999	+	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	-23486	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr3.25825166.+	chr3	25825166	25825167	+	0	NA	promoter-TSS (NM_001145295)	promoter-TSS (NM_001145295)	-177	NM_001145293	55768	Hs.743367	NM_001145293	ENSG00000151092	NGLY1	PNG1|PNGase	N-glycanase 1	protein-coding
chr11.33110451.+	chr11	33110451	33110452	+	0	NA	"intron (NM_001326, intron 17 of 20)"	AluJb|SINE|Alu	12755	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr1.248028218.+	chr1	248028218	248028219	+	0	NA	"exon (NM_015431, exon 3 of 6)"	"exon (NM_015431, exon 3 of 6)"	7717	NM_015431	25893	Hs.269151	NM_015431		TRIM58	BIA2	tripartite motif containing 58	protein-coding
chr19.49231786.-	chr19	49231786	49231787	-	0	NA	"intron (NM_017805, intron 5 of 11)"	AluSx3|SINE|Alu	8810	NM_001130915	284358	Hs.191815	NM_001130915	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
chr2.202092546.-	chr2	202092546	202092547	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5620	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chrX.152916366.-	chrX	152916366	152916367	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8469	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr20.4729565.+	chr20	4729565	4729566	+	0	NA	Intergenic	Intergenic	-8251	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr7.2060050.-	chr7	2060050	2060051	-	0	NA	"intron (NM_001013836, intron 12 of 18)"	CpG	176161	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr17.45078357.-	chr17	45078357	45078358	-	0	NA	Intergenic	AluSg4|SINE|Alu	21743	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr9.105365757.-	chr9	105365757	105365758	-	0	NA	Intergenic	SVA_B|Other|Other	391836	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr12.90939932.-	chr12	90939932	90939933	-	0	NA	Intergenic	AluY|SINE|Alu	371868	NR_038868	439916	Hs.350600	NM_001039384	ENSG00000196243	LINC00615	C12orf37	long intergenic non-protein coding RNA 615	miscRNA
chr14.102954949.-	chr14	102954949	102954950	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21179	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr21.46022610.-	chr21	46022610	46022611	-	0	NA	TTS (NM_198689)	TTS (NM_198689)	-2113	NM_198689	386675	Hs.473999	NM_198689	ENSG00000205441	KRTAP10-7	KAP10.7|KAP18.7|KRTAP18-7	keratin associated protein 10-7	protein-coding
chr15.63229244.+	chr15	63229244	63229245	+	0	NA	Intergenic	AluSp|SINE|Alu	-105594	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr6.138984621.+	chr6	138984621	138984622	+	0	NA	Intergenic	AluSp|SINE|Alu	-28184	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr6.2221714.-	chr6	2221714	2221715	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24154	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr11.16894119.-	chr11	16894119	16894120	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133971	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr20.52362427.-	chr20	52362427	52362428	-	0	NA	Intergenic	AluSx|SINE|Alu	-129821	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr22.49880390.+	chr22	49880390	49880391	+	0	NA	Intergenic	AluSx1|SINE|Alu	170800	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr14.105242477.+	chr14	105242477	105242478	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17461	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr6.100915169.-	chr6	100915169	100915170	-	0	NA	Intergenic	CpG	3618	NM_005068	6492	Hs.520293	NM_005068	ENSG00000112246	SIM1	bHLHe14	single-minded homolog 1 (Drosophila)	protein-coding
chr12.34501163.+	chr12	34501163	34501164	+	0	NA	Intergenic	GSATII|Satellite|centr	325947	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chrX.20694396.-	chrX	20694396	20694397	-	0	NA	Intergenic	AluY|SINE|Alu	409646	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr13.89907347.-	chr13	89907347	89907348	-	0	NA	Intergenic	AluSx1|SINE|Alu	-309320	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	miscRNA
chr19.267155.-	chr19	267155	267156	-	0	NA	Intergenic	CpG	-24014	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr1.3022486.+	chr1	3022486	3022487	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22053	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr8.7877777.-	chr8	7877777	7877778	-	0	NA	Intergenic	Intergenic	22734	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr8.120878178.-	chr8	120878178	120878179	-	0	NA	Intergenic	AluSx1|SINE|Alu	7722	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr6.149638270.-	chr6	149638270	149638271	-	0	NA	Intergenic	CpG	1166	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr14.31683136.+	chr14	31683136	31683137	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6447	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	-	HECT domain containing E3 ubiquitin protein ligase 1	protein-coding
chr4.2878498.+	chr4	2878498	2878499	+	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	32914	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr13.114932180.-	chr13	114932180	114932181	-	0	NA	Intergenic	Intergenic	34085	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.128430619.-	chr2	128430619	128430620	-	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	-2145	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr1.32679268.-	chr1	32679268	32679269	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4573	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr7.157072053.-	chr7	157072053	157072054	-	0	NA	Intergenic	CpG	57657	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr11.67815209.+	chr11	67815209	67815210	+	0	NA	"exon (NM_006053, exon 7 of 15)"	"exon (NM_006053, exon 7 of 15)"	4762	NM_006053	10312	Hs.495985	NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	"T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3"	protein-coding
chr13.114932187.-	chr13	114932187	114932188	-	0	NA	Intergenic	Intergenic	34092	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr11.69579998.+	chr11	69579998	69579999	+	0	NA	Intergenic	AluSp|SINE|Alu	10173	NM_002007	2249	Hs.1755	NM_002007	ENSG00000075388	FGF4	HBGF-4|HST|HST-1|HSTF1|K-FGF|KFGF	fibroblast growth factor 4	protein-coding
chrX.53930547.-	chrX	53930547	53930548	-	0	NA	Intergenic	AluSq2|SINE|Alu	-139080	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr19.3810443.+	chr19	3810443	3810444	+	0	NA	"intron (NM_015174, intron 16 of 18)"	"intron (NM_015174, intron 16 of 18)"	-8633	NM_002378	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chrX.39680381.-	chrX	39680381	39680382	-	0	NA	Intergenic	CpG	-276338	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr13.50177123.-	chr13	50177123	50177124	-	0	NA	Intergenic	AluY|SINE|Alu	17404	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr5.5953947.-	chr5	5953947	5953948	-	0	NA	Intergenic	Intergenic	-383458	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr14.23706411.+	chr14	23706411	23706412	+	0	NA	Intergenic	AluSz|SINE|Alu	48898	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr1.117244811.-	chr1	117244811	117244812	-	0	NA	Intergenic	AluY|SINE|Alu	-30440	NR_031564	100302117		NR_031564	ENSG00000211543	MIR320B1	MIR320B-1|MIRN320B1|hsa-mir-320b-1	microRNA 320b-1	miscRNA
chr6.33811437.+	chr6	33811437	33811438	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39644	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr5.89746537.+	chr5	89746537	89746538	+	0	NA	Intergenic	AluSz|SINE|Alu	24048	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr2.38191066.-	chr2	38191066	38191067	-	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	-13470	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr2.235844067.+	chr2	235844067	235844068	+	0	NA	Intergenic	Intergenic	-16561	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr8.7877750.-	chr8	7877750	7877751	-	0	NA	Intergenic	Intergenic	22707	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr3.50432969.+	chr3	50432969	50432970	+	0	NA	"intron (NM_001005505, intron 3 of 37)"	"intron (NM_001005505, intron 3 of 37)"	-36030	NM_007024	11070	Hs.91566	NM_007024	ENSG00000126062	TMEM115	PL6	transmembrane protein 115	protein-coding
chr2.242447235.-	chr2	242447235	242447236	-	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	-540	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr2.239047364.+	chr2	239047364	239047365	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	1	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr17.67192579.+	chr17	67192579	67192580	+	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	48377	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chr1.3022441.-	chr1	3022441	3022442	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	22098	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr20.3748532.+	chr20	3748532	3748533	+	0	NA	promoter-TSS (NM_001258429)	promoter-TSS (NM_001258429)	-80	NM_001258430	54976	Hs.274422	NM_017874	ENSG00000101220	C20orf27	-	chromosome 20 open reading frame 27	protein-coding
chr3.102974053.+	chr3	102974053	102974054	+	0	NA	Intergenic	SVA_D|Other|Other	820194	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr16.84754592.+	chr16	84754592	84754593	+	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	21037	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr19.11043327.-	chr19	11043327	11043328	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3903	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr15.60696615.+	chr15	60696615	60696616	+	0	NA	Intergenic	AluSp|SINE|Alu	-6430	NM_004039	302	Hs.511605	NM_001002857	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
chr12.77339562.-	chr12	77339562	77339563	-	0	NA	Intergenic	AluY|SINE|Alu	66763	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr14.105618931.-	chr14	105618931	105618932	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16230	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr16.89117857.-	chr16	89117857	89117858	-	0	NA	Intergenic	Intergenic	42360	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr5.22744266.-	chr5	22744266	22744267	-	0	NA	"intron (NM_004061, intron 1 of 14)"	AluY|SINE|Alu	-109465	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	"cadherin 12, type 2 (N-cadherin 2)"	protein-coding
chr3.32863311.+	chr3	32863311	32863312	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3801	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr2.207270719.-	chr2	207270719	207270720	-	0	NA	Intergenic	AluY|SINE|Alu	37649	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr21.33666565.+	chr21	33666565	33666566	+	0	NA	"intron (NM_178817, intron 2 of 4)"	AluY|SINE|Alu	2441	NM_206898	56246	Hs.584940	NM_178817	ENSG00000170262	MRAP	B27|C21orf61|FALP|FGD2|GCCD2	melanocortin 2 receptor accessory protein	protein-coding
chr1.115078599.-	chr1	115078599	115078600	-	0	NA	Intergenic	Intergenic	24818	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chrY.13489482.-	chrY	13489482	13489483	-	0	NA	Intergenic	LSAU|Satellite|Satellite	-1043907	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chrX.39795228.-	chrX	39795228	39795229	-	0	NA	Intergenic	Intergenic	-161491	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr7.55379439.+	chr7	55379439	55379440	+	0	NA	Intergenic	SVA_D|Other|Other	-53702	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr6.21206327.-	chr6	21206327	21206328	-	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	387645	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr4.100009976.-	chr4	100009976	100009977	-	0	NA	promoter-TSS (NM_000671)	promoter-TSS (NM_000671)	32	NR_037884	100507053	Hs.635084	NR_037884	ENSG00000246090	LOC100507053	-	uncharacterized LOC100507053	miscRNA
chr6.126111913.-	chr6	126111913	126111914	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-4	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.202092556.-	chr2	202092556	202092557	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5610	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr3.177129376.-	chr3	177129376	177129377	-	0	NA	Intergenic	AluSx1|SINE|Alu	30333	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	miscRNA
chr14.102954878.+	chr14	102954878	102954879	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21250	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr2.234762632.-	chr2	234762632	234762633	-	0	NA	"intron (NM_018410, intron 1 of 8)"	CpG	-580	NM_018410	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
chr12.53443952.+	chr12	53443952	53443953	+	0	NA	"5' UTR (NM_170754, exon 1 of 29)"	"5' UTR (NM_170754, exon 1 of 29)"	117	NM_170754	23371	Hs.343334	NM_015319	ENSG00000111077	TENC1	C1-TEN|C1TEN|TNS2	tensin like C1 domain containing phosphatase (tensin 2)	protein-coding
chr18.74505063.+	chr18	74505063	74505064	+	0	NA	Intergenic	Intergenic	29188	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr4.99696037.+	chr4	99696037	99696038	+	0	NA	Intergenic	AluY|SINE|Alu	-116225	NM_005723	10098	Hs.118118	NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
chr3.122695706.+	chr3	122695706	122695707	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-725	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr12.58001381.-	chr12	58001381	58001382	-	0	NA	"exon (NM_178502, exon 5 of 7)"	"exon (NM_178502, exon 5 of 7)"	2582	NM_001111270	115557	Hs.61581	NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding
chr1.170388423.+	chr1	170388423	170388424	+	0	NA	Intergenic	SVA_D|Other|Other	-112840	NR_027397	92344	Hs.183702	NM_001146039	ENSG00000120370	GORAB	GO|NTKLBP1|SCYL1BP1	"golgin, RAB6-interacting"	protein-coding
chr5.180018053.+	chr5	180018053	180018054	+	0	NA	"intron (NM_052863, intron 1 of 2)"	CpG-21562	434	NM_052863	92304	Hs.62492	NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	"secretoglobin, family 3A, member 1"	protein-coding
chr7.130526002.+	chr7	130526002	130526003	+	0	NA	Intergenic	AluY|SINE|Alu	35567	NR_029503	407021		NR_029503		MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A	microRNA 29a	miscRNA
chr3.127541992.-	chr3	127541992	127541993	-	0	NA	promoter-TSS (NM_007283)	promoter-TSS (NM_007283)	-101	NM_001003794	11343	Hs.277035	NM_001003794	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
chr20.62479222.+	chr20	62479222	62479223	+	0	NA	Intergenic	Intergenic	-13344	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr5.36855800.-	chr5	36855800	36855801	-	0	NA	Intergenic	AluSx|SINE|Alu	-20996	NR_046262	646719	Hs.355684	NR_046262		LOC646719	-	uncharacterized LOC646719	miscRNA
chr5.178812414.+	chr5	178812414	178812415	+	0	NA	Intergenic	AluY|SINE|Alu	-39983	NM_014244	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr2.158052713.+	chr2	158052713	158052714	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61627	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr2.42801296.+	chr2	42801296	42801297	+	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	5625	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr1.156575121.+	chr1	156575121	156575122	+	0	NA	Intergenic	AluSx|SINE|Alu	-3842	NM_015590	54865	Hs.193832	NM_017725	ENSG00000160818	GPATCH4	GPATC4	G patch domain containing 4	protein-coding
chrX.97253617.-	chrX	97253617	97253618	-	0	NA	Intergenic	AluY|SINE|Alu	-1114710	NM_013347	29935	Hs.659349	NM_013347	ENSG00000204086	RPA4	HSU24186	"replication protein A4, 30kDa"	protein-coding
chr12.123259455.+	chr12	123259455	123259456	+	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	399	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chr11.116922622.-	chr11	116922622	116922623	-	0	NA	"intron (NM_025164, intron 1 of 23)"	AluSq4|SINE|Alu	-46371	NM_025164	23387	Hs.167451	NM_025164	ENSG00000160584	SIK3	QSK|SIK-3	SIK family kinase 3	protein-coding
chr3.36494720.+	chr3	36494720	36494721	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72623	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr5.113698119.-	chr5	113698119	113698120	-	0	NA	"5' UTR (NM_021614, exon 1 of 8)"	"5' UTR (NM_021614, exon 1 of 8)"	-103	NM_021614	3781	Hs.98280	NM_021614	ENSG00000080709	KCNN2	KCa2.2|SK2|SKCA2|hSK2	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2"	protein-coding
chr4.174023270.-	chr4	174023270	174023271	-	0	NA	Intergenic	Harlequin-int|LTR|ERV1	66634	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
chr1.40052601.+	chr1	40052601	40052602	+	0	NA	Intergenic	AluSq|SINE|Alu	-10080	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr14.100705629.-	chr14	100705629	100705630	-	0	NA	"exon (NM_003403, exon 1 of 5)"	"exon (NM_003403, exon 1 of 5)"	-527	NM_003403	7528	Hs.603118	NM_003403		YY1	DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
chr13.112597796.+	chr13	112597796	112597797	+	0	NA	Intergenic	MIRc|SINE|MIR	-124117	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr7.83083498.+	chr7	83083498	83083499	+	0	NA	"intron (NM_001178129, intron 4 of 16)"	AluY|SINE|Alu	187249	NM_001178129	9723	Hs.528721	NM_001178129	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E"	protein-coding
chr4.185174123.+	chr4	185174123	185174124	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35009	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr1.171662958.+	chr1	171662958	171662959	+	0	NA	Intergenic	SVA_C|Other|Other	-41185	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr11.45810302.-	chr11	45810302	45810303	-	0	NA	Intergenic	AluSz6|SINE|Alu	15321	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr16.33966292.+	chr16	33966292	33966293	+	0	NA	Intergenic	CpG	-3789	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr7.1592371.+	chr7	1592371	1592372	+	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	3695	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr10.7626519.+	chr10	7626519	7626520	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35117	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr1.59938110.+	chr1	59938110	59938111	+	0	NA	"intron (NM_018291, intron 6 of 15)"	LTR12C|LTR|ERV1	162360	NM_001244714	55277	Hs.444301	NM_001113411	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
chr1.1077275.+	chr1	1077275	1077276	+	0	NA	"intron (NR_038869, intron 2 of 2)"	"intron (NR_038869, intron 2 of 2)"	4878	NR_038869	254099	Hs.680488	NR_038869	ENSG00000223823	LOC254099	-	uncharacterized LOC254099	miscRNA
chr2.32250700.-	chr2	32250700	32250701	-	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	-14144	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr2.36958579.-	chr2	36958579	36958580	-	0	NA	"intron (NM_053276, intron 3 of 15)"	AluSc|SINE|Alu	-34746	NM_001177969	5212	Hs.137415	NM_001177969	ENSG00000205221	VIT	-	vitrin	protein-coding
chr10.324352.-	chr10	324352	324353	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98418	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr7.139162628.+	chr7	139162628	139162629	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5829	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr7.155089788.-	chr7	155089788	155089789	-	0	NA	"intron (NM_198336, intron 1 of 5)"	CpG	-302	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr19.34394369.+	chr19	34394369	34394370	+	0	NA	Intergenic	AluSx1|SINE|Alu	106618	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr7.54614226.+	chr7	54614226	54614227	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4207	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr1.24513584.+	chr1	24513584	24513585	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	181	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chrM.16328.+	chrM	16328	16329	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr8.56889630.+	chr8	56889630	56889631	+	0	NA	"intron (NM_002350, intron 10 of 12)"	AluSq|SINE|Alu	96830	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr13.35082305.-	chr13	35082305	35082306	-	0	NA	"intron (NR_047036, intron 2 of 2)"	AluY|SINE|Alu	-132517	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr6.33811445.-	chr6	33811445	33811446	-	0	NA	Intergenic	LTR33|LTR|ERVL	39652	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr3.164119736.-	chr3	164119736	164119737	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676547	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr6.169648521.+	chr6	169648521	169648522	+	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	5616	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr3.44743401.-	chr3	44743401	44743402	-	0	NA	Intergenic	AluY|SINE|Alu	10734	NM_001134442	91392	Hs.224843	NM_001134440	ENSG00000196653	ZNF502	-	zinc finger protein 502	protein-coding
chr6.168149232.-	chr6	168149232	168149233	-	0	NA	Intergenic	Intergenic	-48307	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr10.17622249.-	chr10	17622249	17622250	-	0	NA	Intergenic	AluY|SINE|Alu	-37124	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr15.91599282.+	chr15	91599282	91599283	+	0	NA	Intergenic	Intergenic	-33449	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr3.46792308.-	chr3	46792308	46792309	-	0	NA	Intergenic	CpG	6063	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr22.51001319.+	chr22	51001319	51001320	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	9	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr2.178267546.-	chr2	178267546	178267547	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10075	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr10.73208014.-	chr10	73208014	73208015	-	0	NA	"intron (NM_022124, intron 3 of 67)"	"intron (NM_022124, intron 3 of 67)"	-51323	NM_001171932	64072	Hs.656032	NM_001171930	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
chr17.72103701.-	chr17	72103701	72103702	-	0	NA	Intergenic	AluJb|SINE|Alu	96094	NM_000999	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr6.18155585.-	chr6	18155585	18155586	-	0	NA	promoter-TSS (NM_000367)	promoter-TSS (NM_000367)	34	NM_153042	221656	Hs.709336	NM_153042	ENSG00000165097	KDM1B	AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2	lysine (K)-specific demethylase 1B	protein-coding
chr19.1291174.-	chr19	1291174	1291175	-	0	NA	"intron (NM_001405, intron 1 of 3)"	"intron (NM_001405, intron 1 of 3)"	-5021	NM_001405	1943	Hs.741510	NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin-A2	protein-coding
chr12.66636781.-	chr12	66636781	66636782	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53803	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr20.62680149.+	chr20	62680149	62680150	+	0	NA	"exon (NM_018419, exon 2 of 2)"	"exon (NM_018419, exon 2 of 2)"	830	NM_018419	54345	Hs.8619	NM_018419	ENSG00000203883	SOX18	HLTS	SRY (sex determining region Y)-box 18	protein-coding
chr13.88877255.-	chr13	88877255	88877256	-	0	NA	Intergenic	AluY|SINE|Alu	315829	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr17.1532204.-	chr17	1532204	1532205	-	0	NA	promoter-TSS (NM_152346)	promoter-TSS (NM_152346)	74	NM_152346	124935	Hs.160550	NM_152346	ENSG00000167703	SLC43A2	LAT4	"solute carrier family 43, member 2"	protein-coding
chr19.53979635.+	chr19	53979635	53979636	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8646	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr22.42307980.+	chr22	42307980	42307981	+	0	NA	"intron (NM_001207020, intron 1 of 3)"	AluSx1|SINE|Alu	2691	NM_001207020	440829	Hs.526704	NM_001207020		SHISA8	C22orf17|Orf26	shisa homolog 8 (Xenopus laevis)	protein-coding
chr9.129229389.+	chr9	129229389	129229390	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56606	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr22.51001357.-	chr22	51001357	51001358	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	29	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr10.88281887.+	chr10	88281887	88281888	+	0	NA	promoter-TSS (NM_015045)	promoter-TSS (NM_015045)	-346	NM_015045	23063	Hs.714876	NM_015045	ENSG00000062650	WAPAL	FOE|KIAA0261|WAPL	wings apart-like homolog (Drosophila)	protein-coding
chr6.13335669.-	chr6	13335669	13335670	-	0	NA	Intergenic	AluYa5|SINE|Alu	6882	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr8.141559342.-	chr8	141559342	141559343	-	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	-37261	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr10.71044919.+	chr10	71044919	71044920	+	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	15163	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr19.12036015.-	chr19	12036015	12036016	-	0	NA	"5' UTR (NM_144566, exon 1 of 4)"	"5' UTR (NM_144566, exon 1 of 4)"	-132	NM_144566	90592	Hs.528486	NM_001271847	ENSG00000196757	ZNF700	-	zinc finger protein 700	protein-coding
chr19.23474386.+	chr19	23474386	23474387	+	0	NA	Intergenic	AluSx|SINE|Alu	-41214	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr7.130418564.+	chr7	130418564	130418565	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	324	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr19.11463923.+	chr19	11463923	11463924	+	0	NA	"intron (NM_001080503, intron 7 of 10)"	AluSc8|SINE|Alu	-2139	NM_001170635	64748	Hs.6846	NM_001170635	ENSG00000105520	LPPR2	PRG4	lipid phosphate phosphatase-related protein type 2	protein-coding
chr1.235031035.-	chr1	235031035	235031036	-	0	NA	Intergenic	AluY|SINE|Alu	-171246	NR_038856	100506810	Hs.586634	NR_038856		LOC100506810	-	uncharacterized LOC100506810	miscRNA
chr19.2474798.+	chr19	2474798	2474799	+	0	NA	Intergenic	CpG	-1325	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr19.50614546.-	chr19	50614546	50614547	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1199	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr6.7878932.+	chr6	7878932	7878933	+	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	31378	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr20.33062713.+	chr20	33062713	33062714	+	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	8583	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr2.240371778.+	chr2	240371778	240371779	+	0	NA	Intergenic	SVA_D|Other|Other	-49135	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr6.55775042.-	chr6	55775042	55775043	-	0	NA	Intergenic	SVA_D|Other|Other	34667	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr20.62508361.+	chr20	62508361	62508362	+	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	11780	NM_001243892	7165	Hs.473296	NM_001243891	ENSG00000101150	TPD52L2	D54	tumor protein D52-like 2	protein-coding
chr10.104238481.-	chr10	104238481	104238482	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17311	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr2.38825108.+	chr2	38825108	38825109	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5070	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr12.129892267.+	chr12	129892267	129892268	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	495945	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr5.9328750.-	chr5	9328750	9328751	-	0	NA	"intron (NM_003966, intron 4 of 22)"	AluSq|SINE|Alu	-217483	NM_003966	9037	Hs.27621	NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A"	protein-coding
chr11.64120562.-	chr11	64120562	64120563	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6063	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr22.18532564.-	chr22	18532564	18532565	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20413	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr6.74427451.+	chr6	74427451	74427452	+	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	21937	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr8.143165014.+	chr8	143165014	143165015	+	0	NA	Intergenic	Intergenic	-92686	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr11.6651828.+	chr11	6651828	6651829	+	0	NA	"exon (NM_003737, exon 10 of 21)"	"exon (NM_003737, exon 10 of 21)"	-11136	NM_000391	1200	Hs.523454	NM_000391	ENSG00000166340	TPP1	CLN2|LPIC|TPP-1	tripeptidyl peptidase I	protein-coding
chr11.128107151.-	chr11	128107151	128107152	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-285054	NM_005238	2113	Hs.369438	NM_001143820	ENSG00000134954	ETS1	ETS-1|EWSR2	v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	protein-coding
chr3.20070863.-	chr3	20070863	20070864	-	0	NA	Intergenic	AluSx1|SINE|Alu	10661	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr7.5322922.+	chr7	5322922	5322923	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	361	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr5.165696008.-	chr5	165696008	165696009	-	0	NA	Intergenic	AluY|SINE|Alu	1015835	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr14.105618924.+	chr14	105618924	105618925	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16237	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr8.41583362.-	chr8	41583362	41583363	-	0	NA	"exon (NM_000037, exon 6 of 43)"	"exon (NM_000037, exon 6 of 43)"	60558	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr3.49047733.-	chr3	49047733	49047734	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3096	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr19.35532691.-	chr19	35532691	35532692	-	0	NA	"5' UTR (NM_182983, exon 2 of 13)"	"5' UTR (NM_182983, exon 2 of 13)"	-1281	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr16.89546204.-	chr16	89546204	89546205	-	0	NA	"intron (NM_001256182, intron 1 of 13)"	AluY|SINE|Alu	-10765	NR_045839	29123	Hs.740440	NM_001256182	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain 11	protein-coding
chr12.42632471.+	chr12	42632471	42632472	+	0	NA	promoter-TSS (NR_034000)	promoter-TSS (NR_034000)	-317	NM_005748	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr2.101214314.-	chr2	101214314	101214315	-	0	NA	Intergenic	AluY|SINE|Alu	-34896	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr5.65936248.+	chr5	65936248	65936249	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44072	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr12.6462882.+	chr12	6462882	6462883	+	0	NA	"intron (NM_001038, intron 8 of 12)"	AluYf5|SINE|Alu	-11599	NM_001065	7132	Hs.279594	NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60	"tumor necrosis factor receptor superfamily, member 1A"	protein-coding
chr2.126700574.-	chr2	126700574	126700575	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712937	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr3.52981400.-	chr3	52981400	52981401	-	0	NA	"intron (NM_016329, intron 3 of 20)"	AluY|SINE|Alu	49803	NM_198563	375346	Hs.744189	NM_198563	ENSG00000213533	TMEM110	-	transmembrane protein 110	protein-coding
chr2.168057490.+	chr2	168057490	168057491	+	0	NA	"intron (NM_001199144, intron 1 of 8)"	AluSx1|SINE|Alu	13697	NM_001199145	129446	Hs.73680	NM_001079810	ENSG00000163092	XIRP2	CMYA3	xin actin-binding repeat containing 2	protein-coding
chr1.36000226.+	chr1	36000226	36000227	+	0	NA	"intron (NM_024874, intron 2 of 20)"	AluY|SINE|Alu	22811	NM_024874	79932	Hs.683078	NM_024874	ENSG00000142687	KIAA0319L	-	KIAA0319-like	protein-coding
chr13.103088648.-	chr13	103088648	103088649	-	0	NA	Intergenic	AluY|SINE|Alu	34524	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr2.222841477.+	chr2	222841477	222841478	+	0	NA	Intergenic	AluSc8|SINE|Alu	-321389	NM_153038	151278	Hs.350729	NM_153038	ENSG00000163081	CCDC140	-	coiled-coil domain containing 140	protein-coding
chr19.4866164.-	chr19	4866164	4866165	-	0	NA	"intron (NM_005817, intron 1 of 7)"	AluSx1|SINE|Alu	-1616	NM_001164194	10226	Hs.140452	NM_001164189	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
chr15.75116002.-	chr15	75116002	75116003	-	0	NA	"exon (NM_021819, exon 12 of 14)"	"exon (NM_021819, exon 12 of 14)"	2949	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII	complexin 3	protein-coding
chr17.7561701.+	chr17	7561701	7561702	+	0	NA	TTS (NM_001678)	TTS (NM_001678)	7447	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr9.100615909.+	chr9	100615909	100615910	+	0	NA	"5' UTR (NM_004473, exon 1 of 1)"	"5' UTR (NM_004473, exon 1 of 1)"	372	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2	forkhead box E1 (thyroid transcription factor 2)	protein-coding
chr7.5574477.-	chr7	5574477	5574478	-	0	NA	Intergenic	AluJb|SINE|Alu	4245	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr4.110224043.+	chr4	110224043	110224044	+	0	NA	promoter-TSS (NM_198721)	promoter-TSS (NM_198721)	-244	NM_198721	84570	Hs.658842	NM_001256074	ENSG00000188517	COL25A1	AMY|CLAC|CLAC-P|CLACP	"collagen, type XXV, alpha 1"	protein-coding
chr19.5622762.+	chr19	5622762	5622763	+	0	NA	promoter-TSS (NM_001201339)	promoter-TSS (NM_001201339)	176	NM_014649	9667	Hs.655392	NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
chr1.32122157.-	chr1	32122157	32122158	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11319	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr11.1158824.+	chr11	1158824	1158825	+	0	NA	Intergenic	Intergenic	83949	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr5.178812423.+	chr5	178812423	178812424	+	0	NA	Intergenic	AluY|SINE|Alu	-39992	NM_014244	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr18.63211125.-	chr18	63211125	63211126	-	0	NA	Intergenic	AluY|SINE|Alu	206363	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr16.30810970.+	chr16	30810970	30810971	+	0	NA	Intergenic	AluSx|SINE|Alu	-12447	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr17.47363965.+	chr17	47363965	47363966	+	0	NA	Intergenic	AluSx|SINE|Alu	38360	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr1.41832167.+	chr1	41832167	41832168	+	0	NA	Intergenic	CpG	118177	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr12.75694209.-	chr12	75694209	75694210	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29627	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chrX.144902933.-	chrX	144902933	144902934	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-67	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr10.15210646.-	chr10	15210646	15210647	-	0	NA	promoter-TSS (NM_004808)	promoter-TSS (NM_004808)	-49	NM_004808	9397	Hs.60339	NM_004808		NMT2	-	N-myristoyltransferase 2	protein-coding
chr14.105618899.-	chr14	105618899	105618900	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16262	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr9.8858129.+	chr9	8858129	8858130	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124183	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr17.79427789.-	chr17	79427789	79427790	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9575	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr7.63864906.+	chr7	63864906	63864907	+	0	NA	Intergenic	AluY|SINE|Alu	-29165	NR_029404	649395	Hs.728871	NR_029404		LOC649395	-	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene"	pseudo
chr1.9517610.-	chr1	9517610	9517611	-	0	NA	Intergenic	AluJb|SINE|Alu	81918	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr13.83333812.-	chr13	83333812	83333813	-	0	NA	Intergenic	AluYb8|SINE|Alu	-1122716	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr10.125228160.-	chr10	125228160	125228161	-	0	NA	Intergenic	AluY|SINE|Alu	197711	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr16.67520115.+	chr16	67520115	67520116	+	0	NA	Intergenic	AluY|SINE|Alu	-2399	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr7.5558069.+	chr7	5558069	5558070	+	0	NA	Intergenic	AluYc|SINE|Alu	-4670	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr5.64597677.-	chr5	64597677	64597678	-	0	NA	"intron (NM_197941, intron 9 of 24)"	AluSx|SINE|Alu	-180027	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	"ADAM metallopeptidase with thrombospondin type 1 motif, 6"	protein-coding
chr9.128842636.-	chr9	128842636	128842637	-	0	NA	Intergenic	LTR7|LTR|ERV1	246487	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr7.25058036.+	chr7	25058036	25058037	+	0	NA	Intergenic	SVA_F|Other|Other	-38276	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr5.139027427.-	chr5	139027427	139027428	-	0	NA	promoter-TSS (NM_016463)	promoter-TSS (NM_016463)	874	NM_016463	51523	Hs.189119	NM_016463		CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
chr10.134216487.-	chr10	134216487	134216488	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5785	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr5.57859448.-	chr5	57859448	57859449	-	0	NA	Intergenic	SVA_A|Other|Other	19491	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chrX.53125835.-	chrX	53125835	53125836	-	0	NA	Intergenic	AluJb|SINE|Alu	-14293	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr8.120878175.+	chr8	120878175	120878176	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7725	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr9.96720938.-	chr9	96720938	96720939	-	0	NA	Intergenic	CpG	3330	NM_021570	56033	Hs.164960	NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
chr22.20137582.-	chr22	20137582	20137583	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	151	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr6.167600177.-	chr6	167600177	167600178	-	0	NA	Intergenic	Intergenic	-16096	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr9.140448360.+	chr9	140448360	140448361	+	0	NA	Intergenic	AluSx|SINE|Alu	2051	NM_032477	64975	Hs.44017	NM_032477		MRPL41	BMRP|MRP-L27|MRPL27|RPML27	mitochondrial ribosomal protein L41	protein-coding
chr9.6608165.+	chr9	6608165	6608166	+	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	37527	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr20.20433232.-	chr20	20433232	20433233	-	0	NA	"intron (NM_020343, intron 37 of 39)"	CpG	-84467	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	insulinoma-associated 1	protein-coding
chr14.102109496.-	chr14	102109496	102109497	-	0	NA	Intergenic	AluY|SINE|Alu	-81808	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr15.81071432.-	chr15	81071432	81071433	-	0	NA	promoter-TSS (NM_018689)	promoter-TSS (NM_018689)	280	NM_018689	57214	Hs.459088	NM_018689	ENSG00000103888	KIAA1199	CCSP1|TMEM2L	KIAA1199	protein-coding
chr12.46411957.-	chr12	46411957	46411958	-	0	NA	Intergenic	LTR12C|LTR|ERV1	27556	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr11.33132643.-	chr11	33132643	33132644	-	0	NA	"intron (NM_001326, intron 3 of 20)"	AluSx3|SINE|Alu	-34947	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr22.46326769.-	chr22	46326769	46326770	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46239	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr1.211688756.-	chr1	211688756	211688757	-	0	NA	Intergenic	CpG	22497	NM_183059	343035	Hs.632495	NM_001164688	ENSG00000198570	RD3	C1orf36|LCA12	retinal degeneration 3	protein-coding
chr7.64828122.+	chr7	64828122	64828123	+	0	NA	Intergenic	AluSg|SINE|Alu	-10646	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
chr4.138974457.+	chr4	138974457	138974458	+	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	-35711	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr5.127873831.-	chr5	127873831	127873832	-	0	NA	promoter-TSS (NM_001999)	promoter-TSS (NM_001999)	96	NM_001999	2201	Hs.519294	NM_001999	ENSG00000138829	FBN2	CCA|DA9	fibrillin 2	protein-coding
chr20.55220979.-	chr20	55220979	55220980	-	0	NA	Intergenic	AluY|SINE|Alu	-16621	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr4.8862980.+	chr4	8862980	8862981	+	0	NA	Intergenic	CpG	10563	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr20.57415042.-	chr20	57415042	57415043	-	0	NA	"5' UTR (NM_016592, exon 1 of 13)"	"5' UTR (NM_016592, exon 1 of 13)"	-247	NM_016592	2778	Hs.125898	NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH	GNAS complex locus	protein-coding
chrX.133639132.+	chrX	133639132	133639133	+	0	NA	Intergenic	AluSx|SINE|Alu	35160	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr12.122667593.-	chr12	122667593	122667594	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	74	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr11.2907449.+	chr11	2907449	2907450	+	0	NA	promoter-TSS (NM_001122630)	promoter-TSS (NM_001122630)	-454	NM_000076	1028	Hs.106070	NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	"cyclin-dependent kinase inhibitor 1C (p57, Kip2)"	protein-coding
chr6.159416816.-	chr6	159416816	159416817	-	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	-4382	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr2.16671126.-	chr2	16671126	16671127	-	0	NA	Intergenic	AluY|SINE|Alu	-176008	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	"family with sequence similarity 49, member A"	protein-coding
chr14.104339756.-	chr14	104339756	104339757	-	0	NA	Intergenic	AluSz|SINE|Alu	-25698	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr14.101693722.-	chr14	101693722	101693723	-	0	NA	Intergenic	Intergenic	-157474	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr5.31774694.+	chr5	31774694	31774695	+	0	NA	Intergenic	AluSq|SINE|Alu	-24337	NM_178140	23037	Hs.481819	NM_178140	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
chr19.2307933.-	chr19	2307933	2307934	-	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	-223	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr12.105389728.-	chr12	105389728	105389729	-	0	NA	Intergenic	AluY|SINE|Alu	-9630	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr2.10830014.+	chr2	10830014	10830015	+	0	NA	promoter-TSS (NM_001261394)	promoter-TSS (NM_001261394)	99	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr11.118479236.-	chr11	118479236	118479237	-	0	NA	"intron (NM_001144759, intron 1 of 20)"	CpG	-930	NM_001144758	23187	Hs.504062	NM_001144758	ENSG00000019144	PHLDB1	LL5A	"pleckstrin homology-like domain, family B, member 1"	protein-coding
chr19.5409933.-	chr19	5409933	5409934	-	0	NA	Intergenic	AluY|SINE|Alu	45493	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr11.77200942.+	chr11	77200942	77200943	+	0	NA	Intergenic	SVA_D|Other|Other	-15834	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chrX.70493586.-	chrX	70493586	70493587	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9456	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr15.56465895.-	chr15	56465895	56465896	-	0	NA	"intron (NM_022841, intron 2 of 8)"	AluSq|SINE|Alu	-69588	NM_022841	64864	Hs.282855	NM_022841	ENSG00000181827	RFX7	RFXDC2	"regulatory factor X, 7"	protein-coding
chr5.57859836.+	chr5	57859836	57859837	+	0	NA	Intergenic	SVA_A|Other|Other	-19103	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr16.23766307.+	chr16	23766307	23766308	+	0	NA	"5' UTR (NM_022097, exon 1 of 7)"	"5' UTR (NM_022097, exon 1 of 7)"	359	NM_022097	63928	Hs.178589	NM_022097	ENSG00000166869	CHP2	-	calcineurin-like EF-hand protein 2	protein-coding
chr11.44361780.-	chr11	44361780	44361781	-	0	NA	Intergenic	AluJb|SINE|Alu	30064	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr1.9658535.-	chr1	9658535	9658536	-	0	NA	"exon (NM_001130924, exon 4 of 11)"	"exon (NM_001130924, exon 4 of 11)"	-9603	NM_001010866	199953	Hs.706017	NM_001010866	ENSG00000188807	TMEM201	NET5	transmembrane protein 201	protein-coding
chr4.48016921.+	chr4	48016921	48016922	+	0	NA	Intergenic	AluY|SINE|Alu	-1870	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr12.118079884.+	chr12	118079884	118079885	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280277	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr16.3109382.+	chr16	3109382	3109383	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5931	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr2.207270710.-	chr2	207270710	207270711	-	0	NA	Intergenic	AluY|SINE|Alu	37658	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr12.133808119.+	chr12	133808119	133808120	+	0	NA	"exon (NM_001191054, exon 3 of 9)"	"exon (NM_001191054, exon 3 of 9)"	4303	NM_001191054	647589	Hs.703008	NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
chr13.19728183.-	chr13	19728183	19728184	-	0	NA	Intergenic	Intergenic	-11061	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chrX.69569467.-	chrX	69569467	69569468	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59588	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr12.117605431.-	chr12	117605431	117605432	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22869	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr7.151348439.+	chr7	151348439	151348440	+	0	NA	"intron (NM_001040633, intron 4 of 15)"	AluSz|SINE|Alu	-19095	NM_024429	51422	Hs.647072	NM_001040633	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	"protein kinase, AMP-activated, gamma 2 non-catalytic subunit"	protein-coding
chr16.32951976.+	chr16	32951976	32951977	+	0	NA	Intergenic	Intergenic	-55513	NR_003083	386757	Hs.433146	NR_003083	ENSG00000214617	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pB	"solute carrier family 6 (neurotransmitter transporter, creatine), member 10, pseudogene"	pseudo
chr9.137722679.-	chr9	137722679	137722680	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18536	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chrX.144902902.-	chrX	144902902	144902903	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-36	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr19.11006785.-	chr19	11006785	11006786	-	0	NA	"intron (NM_199141, intron 1 of 15)"	"intron (NM_199141, intron 1 of 15)"	-24532	NM_199141	10498	Hs.323213	NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator-associated arginine methyltransferase 1	protein-coding
chr4.77810440.+	chr4	77810440	77810441	+	0	NA	Intergenic	AluSq|SINE|Alu	8562	NM_001029870	345079	Hs.257292	NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
chr7.1798938.-	chr7	1798938	1798939	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50140	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr2.97063529.+	chr2	97063529	97063530	+	0	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	62045	NM_015341	23397	Hs.308045	NM_015341		NCAPH	BRRN1|CAP-H|HCAP-H	"non-SMC condensin I complex, subunit H"	protein-coding
chr14.105618929.+	chr14	105618929	105618930	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16232	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr22.46522740.-	chr22	46522740	46522741	-	0	NA	Intergenic	Intergenic	-13174	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr6.165205822.-	chr6	165205822	165205823	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517289	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr20.44897211.+	chr20	44897211	44897212	+	0	NA	"intron (NM_021248, intron 1 of 11)"	"intron (NM_021248, intron 1 of 11)"	39926	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	"cadherin 22, type 2"	protein-coding
chr2.9551710.+	chr2	9551710	9551711	+	0	NA	"intron (NM_022334, intron 4 of 5)"	AluSx3|SINE|Alu	11933	NM_004763	9270	Hs.467662	NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
chr19.11043320.-	chr19	11043320	11043321	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3896	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr1.62954852.-	chr1	62954852	62954853	-	0	NA	"intron (NM_001272000, intron 40 of 48)"	AluY|SINE|Alu	-52469	NM_003368	7398	Hs.35086	NM_001017415	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
chr3.49047697.+	chr3	49047697	49047698	+	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	3060	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr15.41674325.+	chr15	41674325	41674326	+	0	NA	Intergenic	SVA_F|Other|Other	20333	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr18.57061379.+	chr18	57061379	57061380	+	0	NA	Intergenic	AluY|SINE|Alu	-34871	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	"lectin, mannose-binding, 1"	protein-coding
chr9.135947006.+	chr9	135947006	135947007	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9641	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr9.8857445.-	chr9	8857445	8857446	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123499	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr9.11599645.-	chr9	11599645	11599646	-	0	NA	Intergenic	AluY|SINE|Alu	986922	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr4.185174250.-	chr4	185174250	185174251	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35136	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr11.68303181.+	chr11	68303181	68303182	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74995	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr14.80915391.-	chr14	80915391	80915392	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	217994	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr2.240402000.+	chr2	240402000	240402001	+	0	NA	Intergenic	Intergenic	-79357	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr20.48579888.+	chr20	48579888	48579889	+	0	NA	Intergenic	AluSx3|SINE|Alu	-19625	NM_005985	6615	Hs.48029	NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail homolog 1 (Drosophila)	protein-coding
chr14.100070059.+	chr14	100070059	100070060	+	0	NA	"exon (NM_001144995, exon 1 of 6)"	"exon (NM_001144995, exon 1 of 6)"	668	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
chr19.15037595.-	chr19	15037595	15037596	-	0	NA	Intergenic	AluSp|SINE|Alu	14706	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr2.208031285.+	chr2	208031285	208031286	+	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	295	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr2.32250722.-	chr2	32250722	32250723	-	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	-14122	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr5.675416.+	chr5	675416	675417	+	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	18094	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr9.138065712.-	chr9	138065712	138065713	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7743	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr6.12041576.-	chr6	12041576	12041577	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28852	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr3.577732.-	chr3	577732	577733	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-216366	NM_001253388	10752	Hs.731409	NM_001253387	ENSG00000134121	CHL1	CALL|L1CAM2	cell adhesion molecule with homology to L1CAM (close homolog of L1)	protein-coding
chr18.67868767.-	chr18	67868767	67868768	-	0	NA	"intron (NM_173630, intron 4 of 48)"	AluYa5|SINE|Alu	-4195	NM_173630	25914	Hs.654809	NM_173630	ENSG00000176225	RTTN	-	rotatin	protein-coding
chr15.41539501.-	chr15	41539501	41539502	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16064	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr16.66785760.-	chr16	66785760	66785761	-	0	NA	promoter-TSS (NM_006141)	promoter-TSS (NM_006141)	235	NM_006141	1783	Hs.369068	NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	"dynein, cytoplasmic 1, light intermediate chain 2"	protein-coding
chrX.3607787.-	chrX	3607787	3607788	-	0	NA	"intron (NM_005044, intron 1 of 8)"	AluY|SINE|Alu	-23888	NM_005044	5613	Hs.390788	NM_005044	ENSG00000183943	PRKX	PKX1	"protein kinase, X-linked"	protein-coding
chr9.29188728.-	chr9	29188728	29188729	-	0	NA	"intron (NM_001258282, intron 1 of 6)"	SVA_D|Other|Other	-24270	NM_001258282	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr2.47661287.-	chr2	47661287	47661288	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31081	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr5.131831942.-	chr5	131831942	131831943	-	0	NA	Intergenic	Intergenic	5477	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr11.342938.+	chr11	342938	342939	+	0	NA	Intergenic	AluSz|SINE|Alu	-22024	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr2.86777053.-	chr2	86777053	86777054	-	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	-13567	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr16.70148595.+	chr16	70148595	70148596	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1066	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr2.157973905.-	chr2	157973905	157973906	-	0	NA	Intergenic	AluY|SINE|Alu	140435	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr1.169305356.-	chr1	169305356	169305357	-	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	-31830	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr2.223468830.-	chr2	223468830	223468831	-	0	NA	"intron (NM_005687, intron 15 of 16)"	AluY|SINE|Alu	-51997	NM_005687	10056	Hs.471452	NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|PheHB|PheRS	"phenylalanyl-tRNA synthetase, beta subunit"	protein-coding
chr16.70148592.-	chr16	70148592	70148593	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1063	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr7.532193.-	chr7	532193	532194	-	0	NA	Intergenic	Intergenic	-27288	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr16.84670317.+	chr16	84670317	84670318	+	0	NA	Intergenic	AluY|SINE|Alu	-11814	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr7.157605505.-	chr7	157605505	157605506	-	0	NA	"intron (NM_130842, intron 11 of 21)"	"intron (NM_130842, intron 11 of 21)"	41772	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr12.43781888.+	chr12	43781888	43781889	+	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	163836	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr19.51005323.+	chr19	51005323	51005324	+	0	NA	Intergenic	Intergenic	9093	NM_138334	126119	Hs.737597	NM_001270639	ENSG00000161677	JOSD2	-	Josephin domain containing 2	protein-coding
chr6.8388522.-	chr6	8388522	8388523	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47272	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr8.23097368.-	chr8	23097368	23097369	-	0	NA	Intergenic	AluY|SINE|Alu	3782	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr8.56889743.+	chr8	56889743	56889744	+	0	NA	"intron (NM_002350, intron 10 of 12)"	AluSq|SINE|Alu	96717	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr4.8332094.-	chr4	8332094	8332095	-	0	NA	Intergenic	Intergenic	-60605	NM_053044	94031	Hs.479119	NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
chr7.53196239.-	chr7	53196239	53196240	-	0	NA	Intergenic	AluY|SINE|Alu	-92890	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr14.106358719.+	chr14	106358719	106358720	+	0	NA	Intergenic	Intergenic	-25119	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr13.24099545.-	chr13	24099545	24099546	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	44964	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr6.31211958.+	chr6	31211958	31211959	+	0	NA	Intergenic	SVA_F|Other|Other	27955	NM_001243042	3107	Hs.743218	NM_001243042	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLC-C|PSORS1	"major histocompatibility complex, class I, C"	protein-coding
chr20.20772515.-	chr20	20772515	20772516	-	0	NA	Intergenic	LTR16A2|LTR|ERVL	79249	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr20.3221317.-	chr20	3221317	3221318	-	0	NA	Intergenic	Intergenic	1430	NM_001174089	83959	Hs.105607	NM_001174089	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	"solute carrier family 4, sodium borate transporter, member 11"	protein-coding
chr5.31774706.+	chr5	31774706	31774707	+	0	NA	Intergenic	AluSq|SINE|Alu	-24325	NM_178140	23037	Hs.481819	NM_178140	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
chrX.53123411.-	chrX	53123411	53123412	-	0	NA	Intergenic	CpG	-11869	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.58300814.+	chr16	58300814	58300815	+	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	16974	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr5.86907811.+	chr5	86907811	86907812	+	0	NA	Intergenic	AluY|SINE|Alu	-198961	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr21.43699105.-	chr21	43699105	43699106	-	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	-36601	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr16.89034082.+	chr16	89034082	89034083	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9422	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr4.20342384.+	chr4	20342384	20342385	+	0	NA	"intron (NM_004787, intron 4 of 36)"	AluY|SINE|Alu	-51428	NR_037876	100505893	Hs.665305	NR_037876		SLIT2-IT1	-	SLIT2 intronic transcript 1 (non-protein coding)	miscRNA
chr5.133503213.-	chr5	133503213	133503214	-	0	NA	"intron (NM_170679, intron 2 of 5)"	MER2|DNA|TcMar-Tigger	-9511	NM_006930	6500	Hs.171626	NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
chr7.532169.-	chr7	532169	532170	-	0	NA	Intergenic	Intergenic	-27312	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr8.142126377.+	chr8	142126377	142126378	+	0	NA	Intergenic	Intergenic	-12343	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN/MADD domain containing 3	protein-coding
chr11.92637305.+	chr11	92637305	92637306	+	0	NA	Intergenic	AluY|SINE|Alu	-65484	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chrX.100603761.-	chrX	100603761	100603762	-	0	NA	promoter-TSS (NM_001145951)	promoter-TSS (NM_001145951)	53	NM_001145951	1678	Hs.447877	NM_001145951	ENSG00000126953	TIMM8A	DDP|DDP1|DFN1|MTS|TIM8	translocase of inner mitochondrial membrane 8 homolog A (yeast)	protein-coding
chr2.6835238.-	chr2	6835238	6835239	-	0	NA	Intergenic	AluSq|SINE|Alu	-75204	NR_038369	400941	Hs.446195	NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	miscRNA
chr10.74000626.+	chr10	74000626	74000627	+	0	NA	Intergenic	AluSx1|SINE|Alu	-23734	NR_045564	51008	Hs.500007	NM_001198798		ASCC1	ASC1p50|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
chr1.53858363.-	chr1	53858363	53858364	-	0	NA	Intergenic	Intergenic	-47330	NR_002314	163742	Hs.99394	NR_002314	ENSG00000236253	SLC25A3P1	-	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1"	pseudo
chr14.105158907.-	chr14	105158907	105158908	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2964	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr16.15237475.+	chr16	15237475	15237476	+	0	NA	Intergenic	Intergenic	11384	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	-	microRNA 3180-4	miscRNA
chr19.7929645.+	chr19	7929645	7929646	+	0	NA	"3' UTR (NM_001159944, exon 19 of 19)"	"3' UTR (NM_001159944, exon 19 of 19)"	9681	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr10.16271680.-	chr10	16271680	16271681	-	0	NA	Intergenic	AluSc|SINE|Alu	207262	NM_001261837	9317	Hs.743677	NM_001001484	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
chr1.54953555.+	chr1	54953555	54953556	+	0	NA	Intergenic	Intergenic	-60252	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr13.111268061.-	chr13	111268061	111268062	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-130	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr1.45266203.+	chr1	45266203	45266204	+	0	NA	"exon (NM_004073, exon 1 of 15)"	"exon (NM_004073, exon 1 of 15)"	167	NM_004073	1263	Hs.632415	NM_004073	ENSG00000173846	PLK3	CNK|FNK|PRK	polo-like kinase 3	protein-coding
chr7.74868112.+	chr7	74868112	74868113	+	0	NA	promoter-TSS (NM_001145064)	promoter-TSS (NM_001145064)	-771	NM_001145064	729438	Hs.647505	NM_001145064		GATSL2	-	GATS protein-like 2	protein-coding
chr17.18179037.+	chr17	18179037	18179038	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14613	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chrX.144902926.-	chrX	144902926	144902927	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-60	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr2.18277693.+	chr2	18277693	18277694	+	0	NA	Intergenic	AluY|SINE|Alu	217748	NM_002252	3790	Hs.414489	NM_002252	ENSG00000170745	KCNS3	KV9.3	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3"	protein-coding
chr20.57372781.-	chr20	57372781	57372782	-	0	NA	Intergenic	HAL1|LINE|L1	-19968	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr15.93372368.-	chr15	93372368	93372369	-	0	NA	Intergenic	AluSg|SINE|Alu	-33654	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr14.106359651.-	chr14	106359651	106359652	-	0	NA	Intergenic	Intergenic	24187	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr17.7246100.+	chr17	7246100	7246101	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6252	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr8.95668701.+	chr8	95668701	95668702	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15337	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr7.47487754.-	chr7	47487754	47487755	-	0	NA	"intron (NM_022748, intron 4 of 30)"	"intron (NM_022748, intron 4 of 30)"	-133988	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
chr2.98963800.-	chr2	98963800	98963801	-	0	NA	"intron (NM_001079878, intron 1 of 6)"	CpG	-1182	NM_001298	1261	Hs.234785	NM_001079878	ENSG00000144191	CNGA3	ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3	cyclic nucleotide gated channel alpha 3	protein-coding
chr3.31573991.-	chr3	31573991	31573992	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	500	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr13.114899235.+	chr13	114899235	114899236	+	0	NA	Intergenic	Intergenic	-1140	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr19.13976816.-	chr19	13976816	13976817	-	0	NA	Intergenic	CpG	8697	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	miscRNA
chr11.17160917.+	chr11	17160917	17160918	+	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	30437	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr1.150309647.-	chr1	150309647	150309648	-	0	NA	"intron (NM_004698, intron 7 of 15)"	AluY|SINE|Alu	-15719	NM_004698	9129	Hs.11776	NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18	PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)	protein-coding
chr20.45991149.+	chr20	45991149	45991150	+	0	NA	Intergenic	AluSz|SINE|Alu	-5675	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr15.41803645.-	chr15	41803645	41803646	-	0	NA	"exon (NM_002344, exon 6 of 20)"	"exon (NM_002344, exon 6 of 20)"	-2440	NM_001135685	4058	Hs.434481	NM_001135685	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
chr5.694019.+	chr5	694019	694020	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-509	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr16.78590749.-	chr16	78590749	78590750	-	0	NA	"intron (NM_016373, intron 8 of 8)"	AluSq|SINE|Alu	-457422	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr10.104238473.-	chr10	104238473	104238474	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17303	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr1.121484460.+	chr1	121484460	121484461	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	223550	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr11.68671232.-	chr11	68671232	68671233	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-71	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr6.21206226.+	chr6	21206226	21206227	+	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	-387746	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr5.31774697.+	chr5	31774697	31774698	+	0	NA	Intergenic	AluSq|SINE|Alu	-24334	NM_178140	23037	Hs.481819	NM_178140	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
chr5.3188269.+	chr5	3188269	3188270	+	0	NA	Intergenic	CpG	347939	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr4.77348108.-	chr4	77348108	77348109	-	0	NA	Intergenic	AluY|SINE|Alu	8145	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr6.126111977.-	chr6	126111977	126111978	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-68	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr5.133503211.-	chr5	133503211	133503212	-	0	NA	"intron (NM_170679, intron 2 of 5)"	MER2|DNA|TcMar-Tigger	-9513	NM_006930	6500	Hs.171626	NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
chr10.3594319.+	chr10	3594319	3594320	+	0	NA	Intergenic	Intergenic	233154	NM_001160125	1316	Hs.709396	NM_001160124	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
chr7.53586993.-	chr7	53586993	53586994	-	0	NA	Intergenic	AluY|SINE|Alu	-292631	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr19.45660354.-	chr19	45660354	45660355	-	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	-3054	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr1.120270220.-	chr1	120270220	120270221	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15801	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr5.176523590.+	chr5	176523590	176523591	+	0	NA	"intron (NM_022963, intron 13 of 15)"	"intron (NM_022963, intron 13 of 15)"	7039	NM_022963	2264	Hs.165950	NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
chr15.41613113.-	chr15	41613113	41613114	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11706	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr10.24081688.+	chr10	24081688	24081689	+	0	NA	"intron (NM_001098500, intron 1 of 18)"	AluY|SINE|Alu	98013	NM_001098500	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr7.810963.+	chr7	810963	810964	+	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	-43650	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr20.62611069.-	chr20	62611069	62611070	-	0	NA	promoter-TSS (NM_080621)	promoter-TSS (NM_080621)	74	NM_080621	140700	Hs.27189	NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
chr1.117244795.-	chr1	117244795	117244796	-	0	NA	Intergenic	AluY|SINE|Alu	-30424	NR_031564	100302117		NR_031564	ENSG00000211543	MIR320B1	MIR320B-1|MIRN320B1|hsa-mir-320b-1	microRNA 320b-1	miscRNA
chr1.153937181.-	chr1	153937181	153937182	-	0	NA	"intron (NM_001271960, intron 1 of 4)"	AluSq2|SINE|Alu	1064	NM_001271958	27173	Hs.743291	NM_001271957	ENSG00000143570	SLC39A1	ZIP1|ZIRTL	"solute carrier family 39 (zinc transporter), member 1"	protein-coding
chr9.10786968.+	chr9	10786968	10786969	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174245	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr3.196619087.+	chr3	196619087	196619088	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24360	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chrX.122993639.-	chrX	122993639	122993640	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	23	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr5.108146258.-	chr5	108146258	108146259	-	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	-62735	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chr9.11197046.-	chr9	11197046	11197047	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584323	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.3022487.+	chr1	3022487	3022488	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22052	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr4.183981835.-	chr4	183981835	183981836	-	0	NA	Intergenic	AluJb|SINE|Alu	-23017	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	"family with sequence similarity 92, member A3"	pseudo
chr19.11060457.-	chr19	11060457	11060458	-	0	NA	Intergenic	AluY|SINE|Alu	11141	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr11.47788901.-	chr11	47788901	47788902	-	0	NA	promoter-TSS (NM_015308)	promoter-TSS (NM_015308)	-92	NM_015308	23360	Hs.6834	NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
chr1.24513581.+	chr1	24513581	24513582	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	184	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr18.2377796.+	chr18	2377796	2377797	+	0	NA	Intergenic	AluSg7|SINE|Alu	193693	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr19.33770473.+	chr19	33770473	33770474	+	0	NA	Intergenic	AluSx3|SINE|Alu	22957	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr6.7878966.+	chr6	7878966	7878967	+	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	31344	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr9.8858152.-	chr9	8858152	8858153	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124206	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.57184588.-	chr8	57184588	57184589	-	0	NA	Intergenic	SVA_D|Other|Other	-48653	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr21.35774242.-	chr21	35774242	35774243	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26493	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr4.48016924.+	chr4	48016924	48016925	+	0	NA	Intergenic	AluY|SINE|Alu	-1867	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr2.92172359.-	chr2	92172359	92172360	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-43200	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr19.3220527.+	chr19	3220527	3220528	+	0	NA	Intergenic	AluSz|SINE|Alu	-4174	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr13.31735099.-	chr13	31735099	31735100	-	0	NA	"intron (NM_006644, intron 1 of 17)"	"intron (NM_006644, intron 1 of 17)"	-1018	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr11.69589275.-	chr11	69589275	69589276	-	0	NA	"intron (NM_002007, intron 1 of 2)"	CpG	-896	NM_002007	2249	Hs.1755	NM_002007	ENSG00000075388	FGF4	HBGF-4|HST|HST-1|HSTF1|K-FGF|KFGF	fibroblast growth factor 4	protein-coding
chr7.1542234.+	chr7	1542234	1542235	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1784	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr7.124427303.-	chr7	124427303	124427304	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3561	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr10.60272589.+	chr10	60272589	60272590	+	0	NA	promoter-TSS (NM_001080512)	promoter-TSS (NM_001080512)	-315	NM_001080512	80114	Hs.158745	NM_001080512		BICC1	BICC|CYSRD	bicaudal C homolog 1 (Drosophila)	protein-coding
chr5.1226946.-	chr5	1226946	1226947	-	0	NA	"intron (NM_182632, intron 1 of 11)"	"intron (NM_182632, intron 1 of 11)"	-1476	NM_182632	348932	Hs.213284	NM_182632	ENSG00000164363	SLC6A18	Xtrp2	"solute carrier family 6, member 18"	protein-coding
chr7.158462212.-	chr7	158462212	158462213	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35308	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr2.4156476.+	chr2	4156476	4156477	+	0	NA	Intergenic	Intergenic	-134854	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr13.72439278.-	chr13	72439278	72439279	-	0	NA	"intron (NM_080759, intron 1 of 10)"	"intron (NM_080759, intron 1 of 10)"	-2052	NM_080759	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr17.81186751.+	chr17	81186751	81186752	+	0	NA	"intron (NR_029406, intron 3 of 3)"	AluY|SINE|Alu	12085	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
chr4.148667067.-	chr4	148667067	148667068	-	0	NA	"intron (NM_024605, intron 1 of 22)"	AluSx3|SINE|Alu	-13614	NM_024605	79658	Hs.368631	NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
chr22.30938398.+	chr22	30938398	30938399	+	0	NA	"intron (NM_001193336, intron 1 of 11)"	CpG	4271	NM_001193336	730005	Hs.505605	NM_001193336		SEC14L6	-	SEC14-like 6 (S. cerevisiae)	protein-coding
chr19.4791940.-	chr19	4791940	4791941	-	0	NA	"exon (NM_018708, exon 1 of 1)"	"exon (NM_018708, exon 1 of 1)"	-212	NM_018708	55527	Hs.515082	NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog a (C. elegans)	protein-coding
chr17.7011294.-	chr17	7011294	7011295	-	0	NA	"intron (NM_001201352, intron 4 of 8)"	"intron (NM_001201352, intron 4 of 8)"	-6335	NM_080914	433	Hs.654440	NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
chr21.45566110.-	chr21	45566110	45566111	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12616	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr19.1045738.+	chr19	1045738	1045739	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5636	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chrX.54241876.-	chrX	54241876	54241877	-	0	NA	"intron (NM_001002838, intron 21 of 22)"	SVA_B|Other|Other	32162	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr16.2933720.+	chr16	2933720	2933721	+	0	NA	"intron (NM_138439, intron 1 of 3)"	CpG	524	NM_138439	114984	Hs.534525	NM_001142499	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
chr2.178267544.-	chr2	178267544	178267545	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10073	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr3.13876372.+	chr3	13876372	13876373	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45246	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr1.31248118.+	chr1	31248118	31248119	+	0	NA	Intergenic	Intergenic	-17435	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr20.33726556.-	chr20	33726556	33726557	-	0	NA	"intron (NM_001145025, intron 3 of 9)"	AluY|SINE|Alu	-8605	NR_026728	55741	Hs.720177	NM_001145025	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	"ER degradation enhancer, mannosidase alpha-like 2"	protein-coding
chr1.2062668.-	chr1	2062668	2062669	-	0	NA	"intron (NM_001033582, intron 1 of 14)"	"intron (NM_001033582, intron 1 of 14)"	-26513	NM_001033582	5590	Hs.496255	NM_001033581	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	"protein kinase C, zeta"	protein-coding
chr15.29132966.+	chr15	29132966	29132967	+	0	NA	Intergenic	Intergenic	-39145	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr1.236252207.+	chr1	236252207	236252208	+	0	NA	Intergenic	AluY|SINE|Alu	-23726	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr7.394783.+	chr7	394783	394784	+	0	NA	Intergenic	Intergenic	-24608	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr21.47420969.-	chr21	47420969	47420970	-	0	NA	"intron (NM_001848, intron 29 of 34)"	"intron (NM_001848, intron 29 of 34)"	-19306	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr2.29662830.+	chr2	29662830	29662831	+	0	NA	"intron (NM_004304, intron 4 of 28)"	AluSx1|SINE|Alu	324522	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr7.157261542.-	chr7	157261542	157261543	-	0	NA	Intergenic	Intergenic	-105572	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr4.93787852.+	chr4	93787852	93787853	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562302	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr2.239047362.-	chr2	239047362	239047363	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	1	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr11.68303169.-	chr11	68303169	68303170	-	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	-74983	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr5.115953527.-	chr5	115953527	115953528	-	0	NA	Intergenic	AluY|SINE|Alu	42976	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr17.65040347.-	chr17	65040347	65040348	-	0	NA	promoter-TSS (NM_000727)	promoter-TSS (NM_000727)	305	NM_000727	786	Hs.147989	NM_000727	ENSG00000108878	CACNG1	CACNLG	"calcium channel, voltage-dependent, gamma subunit 1"	protein-coding
chr21.47403506.+	chr21	47403506	47403507	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1843	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr5.57859401.-	chr5	57859401	57859402	-	0	NA	Intergenic	SVA_A|Other|Other	19538	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr19.7123260.+	chr19	7123260	7123261	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53789	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr12.30327119.+	chr12	30327119	30327120	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389427	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr7.56438022.+	chr7	56438022	56438023	+	0	NA	Intergenic	Intergenic	78046	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr20.62701343.-	chr20	62701343	62701344	-	0	NA	"intron (NM_003195, intron 6 of 9)"	"intron (NM_003195, intron 6 of 9)"	-7333	NM_003195	6919	Hs.736326	NM_003195	ENSG00000171703	TCEA2	TFIIS	"transcription elongation factor A (SII), 2"	protein-coding
chr1.101786794.+	chr1	101786794	101786795	+	0	NA	Intergenic	AluY|SINE|Alu	19657	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr17.18179015.+	chr17	18179015	18179016	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14591	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr3.102973963.-	chr3	102973963	102973964	-	0	NA	Intergenic	SVA_D|Other|Other	-820104	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr12.106477581.+	chr12	106477581	106477582	+	0	NA	"intron (NM_014840, intron 4 of 6)"	"intron (NM_014840, intron 4 of 6)"	56230	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr9.74827305.-	chr9	74827305	74827306	-	0	NA	"intron (NM_001242505, intron 4 of 15)"	AluY|SINE|Alu	-63038	NM_004293	9615	Hs.494163	NM_001242505	ENSG00000119125	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
chr8.56758266.-	chr8	56758266	56758267	-	0	NA	Intergenic	AluSx3|SINE|Alu	34120	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr10.131769842.-	chr10	131769842	131769843	-	0	NA	Intergenic	CpG-3433	7751	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr7.2943538.-	chr7	2943538	2943539	-	0	NA	Intergenic	Intergenic	59579	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr12.57639799.-	chr12	57639799	57639800	-	0	NA	"intron (NM_145064, intron 6 of 11)"	AluSp|SINE|Alu	-5170	NM_145064	246329	Hs.417595	NM_145064	ENSG00000185482	STAC3	-	SH3 and cysteine rich domain 3	protein-coding
chr6.167607739.-	chr6	167607739	167607740	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23658	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr8.91618532.-	chr8	91618532	91618533	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-39601	NM_001146273	169200	Hs.737401	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
chr16.8807571.+	chr16	8807571	8807572	+	0	NA	"5' UTR (NM_000663, exon 1 of 16)"	"5' UTR (NM_000663, exon 1 of 16)"	745	NM_000663	18	Hs.336768	NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
chr12.51681426.-	chr12	51681426	51681427	-	0	NA	"intron (NM_016293, intron 11 of 12)"	"intron (NM_016293, intron 11 of 12)"	17224	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr4.989228.-	chr4	989228	989229	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	2004	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr8.143581359.+	chr8	143581359	143581360	+	0	NA	"intron (NM_001702, intron 16 of 29)"	"intron (NM_001702, intron 16 of 29)"	35982	NM_001702	575	Hs.194654	NM_001702	ENSG00000181790	BAI1	GDAIF	brain-specific angiogenesis inhibitor 1	protein-coding
chr14.23844984.+	chr14	23844984	23844985	+	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	-1033	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr10.133016179.-	chr10	133016179	133016180	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93805	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr2.220430192.+	chr2	220430192	220430193	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6076	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr19.12595755.+	chr19	12595755	12595756	+	0	NA	promoter-TSS (NM_152601)	promoter-TSS (NM_152601)	-123	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr7.65575655.+	chr7	65575655	65575656	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4150	NM_001142414	27297	Hs.300684	NM_001040647	ENSG00000241258	CRCP	CGRP-RCP|CGRPRCP|RCP|RCP9	CGRP receptor component	protein-coding
chr6.122006956.-	chr6	122006956	122006957	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-250211	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr13.111856342.+	chr13	111856342	111856343	+	0	NA	"intron (NM_001113513, intron 1 of 19)"	L2b|LINE|L2	17169	NM_001113513	8874	Hs.508738	NM_001113511	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor (GEF) 7	protein-coding
chr9.6608160.+	chr9	6608160	6608161	+	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	37532	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr3.57630915.-	chr3	57630915	57630916	-	0	NA	"intron (NM_152678, intron 11 of 19)"	AluSg|SINE|Alu	47700	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
chr2.130902789.-	chr2	130902789	130902790	-	0	NA	promoter-TSS (NM_001258307)	promoter-TSS (NM_001258307)	82	NM_207310	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chr18.77627515.-	chr18	77627515	77627516	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3847	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr22.20137580.-	chr22	20137580	20137581	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	149	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr12.96314655.-	chr12	96314655	96314656	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21773	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chrX.153769410.+	chrX	153769410	153769411	+	0	NA	"intron (NM_000402, intron 2 of 12)"	"intron (NM_000402, intron 2 of 12)"	-1049	NM_001099856	8517	Hs.43505	NM_001099856	ENSG00000073009	IKBKG	AMCBX1|FIP-3|FIP3|Fip3p|IKK-gamma|IP|IP1|IP2|IPD2|NEMO|ZC2HC9	"inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma"	protein-coding
chr7.45164945.+	chr7	45164945	45164946	+	0	NA	Intergenic	Intergenic	-13599	NM_001261834	9238	Hs.741611	NM_001261834	ENSG00000136270	TBRG4	CPR2|FASTKD4	transforming growth factor beta regulator 4	protein-coding
chr3.128161138.+	chr3	128161138	128161139	+	0	NA	Intergenic	Intergenic	-21299	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr9.18314887.+	chr9	18314887	18314888	+	0	NA	Intergenic	AluY|SINE|Alu	-159192	NM_052866	92949	Hs.741483	NM_139238	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS-like 1	protein-coding
chr7.61969443.+	chr7	61969443	61969444	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	794991	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr15.37172808.+	chr15	37172808	37172809	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5926	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr5.170737068.+	chr5	170737068	170737069	+	0	NA	"intron (NM_021025, intron 1 of 2)"	CpG-21367	780	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr3.58342519.+	chr3	58342519	58342520	+	0	NA	"intron (NM_017771, intron 1 of 17)"	AluSg|SINE|Alu	23902	NM_017771	54899	Hs.190544	NM_017771	ENSG00000168297	PXK	MONaKA	PX domain containing serine/threonine kinase	protein-coding
chr8.139075528.+	chr8	139075528	139075529	+	0	NA	Intergenic	AluSx|SINE|Alu	433537	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	"family with sequence similarity 135, member B"	protein-coding
chr17.18575646.+	chr17	18575646	18575647	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	848	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr1.92206176.+	chr1	92206176	92206177	+	0	NA	"intron (NR_036634, intron 5 of 17)"	AluSx1|SINE|Alu	145660	NM_003243	7049	Hs.735919	NM_001195683	ENSG00000069702	TGFBR3	BGCAN|betaglycan	"transforming growth factor, beta receptor III"	protein-coding
chr6.33793315.+	chr6	33793315	33793316	+	0	NA	Intergenic	Intergenic	-21522	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr12.6734583.+	chr12	6734583	6734584	+	0	NA	"intron (NM_020400, intron 1 of 1)"	AluY|SINE|Alu	6232	NM_001142961	57121	Hs.155538	NM_001142961	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
chr2.202046046.-	chr2	202046046	202046047	-	0	NA	Intergenic	AluSz|SINE|Alu	1575	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr22.30659673.+	chr22	30659673	30659674	+	0	NA	"3' UTR (NM_020530, exon 3 of 3)"	"3' UTR (NM_020530, exon 3 of 3)"	3156	NM_020530	5008	Hs.248156	NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
chr16.68482191.-	chr16	68482191	68482192	-	0	NA	"intron (NM_018667, intron 1 of 8)"	CpG	-218	NM_018667	55512	Hs.368421	NM_018667	ENSG00000103056	SMPD3	NSMASE2	"sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)"	protein-coding
chr10.118501960.-	chr10	118501960	118501961	-	0	NA	"exon (NM_025015, exon 1 of 12)"	"exon (NM_025015, exon 1 of 12)"	-125	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr7.157261536.-	chr7	157261536	157261537	-	0	NA	Intergenic	Intergenic	-105578	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr1.10727912.+	chr1	10727912	10727913	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128821	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr9.137277777.+	chr9	137277777	137277778	+	0	NA	"intron (NM_002957, intron 1 of 9)"	"intron (NM_002957, intron 1 of 9)"	6520	NR_039816	100616236		NR_039816		MIR4669	-	microRNA 4669	miscRNA
chr18.34669431.+	chr18	34669431	34669432	+	0	NA	"intron (NM_020776, intron 7 of 9)"	AluSx|SINE|Alu	-260252	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr2.202046016.-	chr2	202046016	202046017	-	0	NA	Intergenic	AluSz|SINE|Alu	1605	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr18.34765027.+	chr18	34765027	34765028	+	0	NA	"intron (NM_020776, intron 9 of 9)"	AluY|SINE|Alu	-355848	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr8.38081639.+	chr8	38081639	38081640	+	0	NA	Intergenic	AluSg|SINE|Alu	-7370	NM_015214	23259	Hs.434966	NM_001164232	ENSG00000085788	DDHD2	SAMWD1|SPG54	DDHD domain containing 2	protein-coding
chr11.133763837.+	chr11	133763837	133763838	+	0	NA	Intergenic	AluY|SINE|Alu	4639	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr18.67270904.-	chr18	67270904	67270905	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202620	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr8.12476337.-	chr8	12476337	12476338	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46783	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr10.104209710.+	chr10	104209710	104209711	+	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	136	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr1.2284766.+	chr1	2284766	2284767	+	0	NA	promoter-TSS (NR_024489)	promoter-TSS (NR_024489)	-666	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr21.22013054.-	chr21	22013054	22013055	-	0	NA	Intergenic	AluY|SINE|Alu	-162372	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	miscRNA
chr5.501524.-	chr5	501524	501525	-	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	-23025	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr2.905560.+	chr2	905560	905561	+	0	NA	Intergenic	Intergenic	-40994	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr13.20387523.+	chr13	20387523	20387524	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30364	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr3.128194242.+	chr3	128194242	128194243	+	0	NA	Intergenic	Intergenic	-8151	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr7.627666.+	chr7	627666	627667	+	0	NA	"intron (NM_002735, intron 7 of 10)"	"intron (NM_002735, intron 7 of 10)"	67638	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr9.134699776.+	chr9	134699776	134699777	+	0	NA	Intergenic	Intergenic	-86851	NM_005312	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
chr19.18717339.-	chr19	18717339	18717340	-	0	NA	"intron (NM_004750, intron 1 of 8)"	CpG	-321	NM_004750	9244	Hs.114948	NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor-like factor 1	protein-coding
chr11.113666000.+	chr11	113666000	113666001	+	0	NA	Intergenic	AluSx|SINE|Alu	15482	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr6.46742401.-	chr6	46742401	46742402	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18693	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr15.93372507.+	chr15	93372507	93372508	+	0	NA	Intergenic	AluSg|SINE|Alu	33793	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr19.1952931.+	chr19	1952931	1952932	+	0	NA	"non-coding (NR_033400, exon 3 of 3)"	"non-coding (NR_033400, exon 3 of 3)"	1617	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	miscRNA
chr20.52741024.-	chr20	52741024	52741025	-	0	NA	Intergenic	ORSL-2a|DNA|hAT-Tip100	-49492	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr12.132157762.-	chr12	132157762	132157763	-	0	NA	Intergenic	Intergenic	37870	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr6.37047181.-	chr6	37047181	37047182	-	0	NA	Intergenic	AluSc|SINE|Alu	-73758	NM_173558	221472	Hs.509664	NM_173558	ENSG00000146192	FGD2	ZFYVE4	"FYVE, RhoGEF and PH domain containing 2"	protein-coding
chr13.68791137.-	chr13	68791137	68791138	-	0	NA	Intergenic	AluY|SINE|Alu	-668320	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr15.93372504.-	chr15	93372504	93372505	-	0	NA	Intergenic	AluSg|SINE|Alu	-33790	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr22.46522773.-	chr22	46522773	46522774	-	0	NA	Intergenic	Intergenic	-13207	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr2.74691970.+	chr2	74691970	74691971	+	0	NA	"intron (NM_006302, intron 1 of 3)"	CpG	567	NM_001146158	7841	Hs.516119	NM_001146158	ENSG00000115275	MOGS	CDG2B|CWH41|DER7|GCS1	mannosyl-oligosaccharide glucosidase	protein-coding
chr14.89029511.+	chr14	89029511	89029512	+	0	NA	promoter-TSS (NM_207661)	promoter-TSS (NM_207661)	-180	NM_207661	79882	Hs.686171	NM_001160103	ENSG00000100722	ZC3H14	MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
chr16.60255821.+	chr16	60255821	60255822	+	0	NA	Intergenic	AluSc8|SINE|Alu	-466726	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr16.1824182.-	chr16	1824182	1824183	-	0	NA	"intron (NM_001257370, intron 2 of 7)"	"intron (NM_001257370, intron 2 of 7)"	-953	NM_001257370	197342	Hs.7247	NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic endonuclease 1 homolog 2 (S. pombe)	protein-coding
chr9.16748441.-	chr9	16748441	16748442	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122345	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr18.74140089.+	chr18	74140089	74140090	+	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	67057	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr21.39289266.+	chr21	39289266	39289267	+	0	NA	promoter-TSS (NM_002240)	promoter-TSS (NM_002240)	-525	NM_002240	3763	Hs.741904	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	"potassium inwardly-rectifying channel, subfamily J, member 6"	protein-coding
chr7.97821183.-	chr7	97821183	97821184	-	0	NA	"exon (NM_014916, exon 11 of 14)"	"exon (NM_014916, exon 11 of 14)"	20383	NM_177455	168620	Hs.674510	NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	"basic helix-loop-helix family, member a15"	protein-coding
chr20.32914431.+	chr20	32914431	32914432	+	0	NA	Intergenic	AluSx|SINE|Alu	-14823	NM_001161766	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr2.237067800.-	chr2	237067800	237067801	-	0	NA	Intergenic	Intergenic	-8852	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chrX.152916359.+	chrX	152916359	152916360	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8462	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr16.1020697.+	chr16	1020697	1020698	+	0	NA	"intron (NR_033645, intron 1 of 11)"	CpG	287	NR_033646	64788	Hs.732776	NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
chr11.61044940.-	chr11	61044940	61044941	-	0	NA	"intron (NM_152718, intron 10 of 19)"	AluJo|SINE|Alu	-17848	NM_152718	220001	Hs.60640	NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
chr4.1721013.+	chr4	1721013	1721014	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	2071	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr1.108113220.-	chr1	108113220	108113221	-	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	-117906	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr2.25667159.-	chr2	25667159	25667160	-	0	NA	"intron (NM_001256303, intron 12 of 19)"	AluSx1|SINE|Alu	101700	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr11.67351046.-	chr11	67351046	67351047	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	20	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr10.131449492.-	chr10	131449492	131449493	-	0	NA	"intron (NM_002412, intron 2 of 4)"	"intron (NM_002412, intron 2 of 4)"	-184038	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
chr10.102495560.+	chr10	102495560	102495561	+	0	NA	Intergenic	CpG	-9908	NM_003988	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	PAPRS	paired box 2	protein-coding
chr1.161393123.+	chr1	161393123	161393124	+	0	NA	Intergenic	SVA_D|Other|Other	-55450	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chr14.87514433.+	chr14	87514433	87514434	+	0	NA	Intergenic	AluY|SINE|Alu	142311	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LOC283585	-	uncharacterized LOC283585	miscRNA
chr14.60604665.+	chr14	60604665	60604666	+	0	NA	Intergenic	AluSc8|SINE|Alu	27546	NM_016029	51635	Hs.59719	NM_016029	ENSG00000100612	DHRS7	SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase (SDR family) member 7	protein-coding
chr16.2333171.-	chr16	2333171	2333172	-	0	NA	"intron (NM_001089, intron 26 of 32)"	"intron (NM_001089, intron 26 of 32)"	-8550	NR_039868	100616241		NR_039868	ENSG00000264004	MIR4717	-	microRNA 4717	miscRNA
chr9.70648642.-	chr9	70648642	70648643	-	0	NA	Intergenic	TAR1|Satellite|telo	158465	NM_201453	445571	Hs.645337	NM_201453		CBWD3	bA561O23.1	COBW domain containing 3	protein-coding
chr1.40260008.+	chr1	40260008	40260009	+	0	NA	Intergenic	AluY|SINE|Alu	-5475	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr8.6644927.-	chr8	6644927	6644928	-	0	NA	Intergenic	AluY|SINE|Alu	42166	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr2.155617326.+	chr2	155617326	155617327	+	0	NA	"intron (NM_002239, intron 2 of 2)"	AluY|SINE|Alu	62233	NM_001260509	3760	Hs.591606	NM_001260508	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	"potassium inwardly-rectifying channel, subfamily J, member 3"	protein-coding
chr11.119749453.+	chr11	119749453	119749454	+	0	NA	Intergenic	AluSp|SINE|Alu	-150018	NM_203285	5818	Hs.334846	NM_002855	ENSG00000110400	PVRL1	CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
chr22.18532575.-	chr22	18532575	18532576	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20424	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr21.47838759.-	chr21	47838759	47838760	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40103	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr1.32731826.+	chr1	32731826	32731827	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7886	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr20.62127643.-	chr20	62127643	62127644	-	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	-3025	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr8.42217762.+	chr8	42217762	42217763	+	0	NA	"intron (NM_002690, intron 9 of 13)"	AluSz|SINE|Alu	16912	NM_014420	27121	Hs.159311	NM_014420	ENSG00000104371	DKK4	DKK-4	dickkopf homolog 4 (Xenopus laevis)	protein-coding
chr8.60674619.+	chr8	60674619	60674620	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519335	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr7.109212685.+	chr7	109212685	109212686	+	0	NA	Intergenic	AluSz|SINE|Alu	387585	NR_003024	442720	Hs.535194	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	"eukaryotic translation initiation factor 3, subunit I pseudogene 1"	pseudo
chr18.77244837.+	chr18	77244837	77244838	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84511	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr6.170266908.+	chr6	170266908	170266909	+	0	NA	Intergenic	Intergenic	-67987	NR_026781	401288	Hs.556095	NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	miscRNA
chr12.131191634.-	chr12	131191634	131191635	-	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	-132185	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr13.50701745.-	chr13	50701745	50701746	-	0	NA	Intergenic	CpG-6444	2068	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr15.91599292.+	chr15	91599292	91599293	+	0	NA	Intergenic	Intergenic	-33459	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr22.49791856.-	chr22	49791856	49791857	-	0	NA	Intergenic	Intergenic	-259334	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr8.60674609.-	chr8	60674609	60674610	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519345	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr2.29662844.+	chr2	29662844	29662845	+	0	NA	"intron (NM_004304, intron 4 of 28)"	AluSx1|SINE|Alu	324536	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr8.38758823.-	chr8	38758823	38758824	-	0	NA	promoter-TSS (NM_021623)	promoter-TSS (NM_021623)	-70	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	"pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2"	protein-coding
chr2.235666481.-	chr2	235666481	235666482	-	0	NA	Intergenic	AluSc8|SINE|Alu	194147	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr3.196619089.-	chr3	196619089	196619090	-	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	-24362	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr6.170055427.-	chr6	170055427	170055428	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46732	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr9.35846397.+	chr9	35846397	35846398	+	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	-13874	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr1.225619074.+	chr1	225619074	225619075	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2517	NM_194442	3930	Hs.735694	NM_002296	ENSG00000143815	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
chr9.39817606.+	chr9	39817606	39817607	+	0	NA	Intergenic	CpG	-67369	NM_001085452	647060	Hs.632654	NM_001085452	ENSG00000204849	SPATA31A1	C9orf36|C9orf36A|FAM75A1	"SPATA31 subfamily A, member 1"	protein-coding
chr1.217394796.-	chr1	217394796	217394797	-	0	NA	Intergenic	AluSq2|SINE|Alu	83699	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr2.47661314.+	chr2	47661314	47661315	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	31108	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr6.168449348.+	chr6	168449348	168449349	+	0	NA	Intergenic	CpG	27184	NM_001122841	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr12.92086037.+	chr12	92086037	92086038	+	0	NA	Intergenic	AluSx3|SINE|Alu	449452	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr22.38530987.+	chr22	38530987	38530988	+	0	NA	"intron (NM_001004426, intron 6 of 15)"	"intron (NM_001004426, intron 6 of 15)"	-24311	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr2.9376007.+	chr2	9376007	9376008	+	0	NA	"intron (NM_003887, intron 1 of 27)"	"intron (NM_003887, intron 1 of 27)"	29113	NM_003887	8853	Hs.555902	NM_001135191	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	"ArfGAP with SH3 domain, ankyrin repeat and PH domain 2"	protein-coding
chr10.4887121.-	chr10	4887121	4887122	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18752	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr7.72432621.-	chr7	72432621	72432622	-	0	NA	Intergenic	AluY|SINE|Alu	7319	NR_033323	260294	Hs.510927	NM_001039487	ENSG00000106133	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	"NOP2/Sun domain family, member 5 pseudogene 2"	pseudo
chr9.10974573.-	chr9	10974573	10974574	-	0	NA	Intergenic	L1PBa|LINE|L1	361850	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr9.86597306.+	chr9	86597306	86597307	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1669	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr17.40536631.-	chr17	40536631	40536632	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3774	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr2.230579963.+	chr2	230579963	230579964	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-677	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr4.68566919.-	chr4	68566919	68566920	-	0	NA	promoter-TSS (NR_015439)	promoter-TSS (NR_015439)	30	NM_018227	55236	Hs.212774	NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin-like modifier activating enzyme 6	protein-coding
chr11.342906.-	chr11	342906	342907	-	0	NA	Intergenic	AluSz|SINE|Alu	21992	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chrX.112187600.+	chrX	112187600	112187601	+	0	NA	Intergenic	AluY|SINE|Alu	-103557	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr19.45660352.+	chr19	45660352	45660353	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3056	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr8.26241047.-	chr8	26241047	26241048	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-524	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr1.90038714.-	chr1	90038714	90038715	-	0	NA	"intron (NM_001134476, intron 5 of 7)"	AluY|SINE|Alu	-14442	NM_015350	23507	Hs.741594	NM_001134476	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	"leucine rich repeat containing 8 family, member B"	protein-coding
chr10.116164486.+	chr10	116164486	116164487	+	0	NA	promoter-TSS (NM_032550)	promoter-TSS (NM_032550)	29	NM_001001936	84632	Hs.501106	NM_001001936	ENSG00000169129	AFAP1L2	KIAA1914|XB130	actin filament associated protein 1-like 2	protein-coding
chr8.47087564.-	chr8	47087564	47087565	-	0	NA	Intergenic	GSAT|Satellite|centr	664944	NR_027012	497634	Hs.406982	NR_027012	ENSG00000253314	LINC00293	BEYLA|NCRNA00293	long intergenic non-protein coding RNA 293	miscRNA
chr1.32122103.-	chr1	32122103	32122104	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11265	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr21.47838746.-	chr21	47838746	47838747	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40116	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chrX.122993642.-	chrX	122993642	122993643	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	20	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chrM.6565.+	chrM	6565	6566	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.70416478.+	chr2	70416478	70416479	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	1673	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr3.172180226.-	chr3	172180226	172180227	-	0	NA	Intergenic	AluY|SINE|Alu	13980	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr2.109985562.-	chr2	109985562	109985563	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55481	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr12.122709756.+	chr12	122709756	122709757	+	0	NA	"intron (NR_024600, intron 2 of 6)"	AluSz|SINE|Alu	2312	NR_024601	56616	Hs.169611	NM_019887	ENSG00000184047	DIABLO	DFNA64|DIABLO-S|SMAC|SMAC3	"diablo, IAP-binding mitochondrial protein"	protein-coding
chr7.532191.-	chr7	532191	532192	-	0	NA	Intergenic	Intergenic	-27290	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chrX.102023741.+	chrX	102023741	102023742	+	0	NA	promoter-TSS (NR_038988)	promoter-TSS (NR_038988)	-354	NR_038988	100287765	Hs.687084	NR_038988	ENSG00000223546	LINC00630	-	long intergenic non-protein coding RNA 630	miscRNA
chr16.209977.-	chr16	209977	209978	-	0	NA	Intergenic	Intergenic	5996	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr6.143227027.-	chr6	143227027	143227028	-	0	NA	"intron (NM_006734, intron 1 of 9)"	AluSz6|SINE|Alu	-39311	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chr20.48929607.-	chr20	48929607	48929608	-	0	NA	"intron (NR_034124, intron 4 of 4)"	"intron (NR_034124, intron 4 of 4)"	-20350	NR_034124	284751	Hs.282325	NR_034124	ENSG00000203999	LOC284751	-	uncharacterized LOC284751	miscRNA
chrM.6539.-	chrM	6539	6540	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.166934788.-	chr6	166934788	166934789	-	0	NA	"intron (NM_001006932, intron 4 of 21)"	"intron (NM_001006932, intron 4 of 21)"	11867	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	miscRNA
chr2.159651791.+	chr2	159651791	159651792	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-38	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chrX.152916374.-	chrX	152916374	152916375	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8477	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr17.78075296.+	chr17	78075296	78075297	+	0	NA	promoter-TSS (NM_000152)	promoter-TSS (NM_000152)	-59	NM_001079804	2548	Hs.1437	NM_000152	ENSG00000171298	GAA	LYAG	"glucosidase, alpha; acid"	protein-coding
chr1.3022449.+	chr1	3022449	3022450	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22090	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr14.105158921.-	chr14	105158921	105158922	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2978	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr9.137760868.+	chr9	137760868	137760869	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-11790	NM_015837	2220	Hs.54517	NM_004108	ENSG00000160339	FCN2	EBP-37|FCNL|P35|ficolin-2	ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)	protein-coding
chr2.52338188.+	chr2	52338188	52338189	+	0	NA	Intergenic	AluY|SINE|Alu	-1078514	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr18.41408399.+	chr18	41408399	41408400	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550784	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr2.32250862.-	chr2	32250862	32250863	-	0	NA	"intron (NM_032574, intron 4 of 4)"	"intron (NM_032574, intron 4 of 4)"	-13982	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr2.10424806.-	chr2	10424806	10424807	-	0	NA	Intergenic	Intergenic	18224	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr19.45999954.-	chr19	45999954	45999955	-	0	NA	"intron (NM_206900, intron 1 of 9)"	CpG	-359	NM_206900	6253	Hs.47517	NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
chr5.148651390.+	chr5	148651390	148651391	+	0	NA	promoter-TSS (NM_001146337)	promoter-TSS (NM_001146337)	-11	NM_001146337	134265	Hs.483793	NM_001146337	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1-like 1	protein-coding
chr22.20857002.-	chr22	20857002	20857003	-	0	NA	Intergenic	AluY|SINE|Alu	4884	NM_001003891	51586	Hs.517421	NM_001003891	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
chr22.44600934.+	chr22	44600934	44600935	+	0	NA	"intron (NM_022141, intron 12 of 13)"	"intron (NM_022141, intron 12 of 13)"	23677	NM_001137606	64098	Hs.666944	NM_001137606	ENSG00000138964	PARVG	-	"parvin, gamma"	protein-coding
chr2.143263205.-	chr2	143263205	143263206	-	0	NA	Intergenic	AluY|SINE|Alu	371990	NM_003937	8942	Hs.470126	NM_001032998	ENSG00000115919	KYNU	-	kynureninase	protein-coding
chr10.59080729.+	chr10	59080729	59080730	+	0	NA	Intergenic	AluY|SINE|Alu	-16410	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr20.60781418.-	chr20	60781418	60781419	-	0	NA	Intergenic	CpG	-13905	NM_007232	11255	Hs.251399	NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
chr2.47661272.-	chr2	47661272	47661273	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31066	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr6.11537791.-	chr6	11537791	11537792	-	0	NA	promoter-TSS (NM_001100829)	promoter-TSS (NM_001100829)	669	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
chr2.32250717.+	chr2	32250717	32250718	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14127	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr20.35167609.-	chr20	35167609	35167610	-	0	NA	Intergenic	AluY|SINE|Alu	2278	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr17.73615823.-	chr17	73615823	73615824	-	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	13691	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr12.51681512.+	chr12	51681512	51681513	+	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	-17310	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr6.170548027.+	chr6	170548027	170548028	+	0	NA	Intergenic	Intergenic	23630	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr2.232348638.-	chr2	232348638	232348639	-	0	NA	Intergenic	CpG	19433	NM_005381	4691	Hs.79110	NM_005381		NCL	C23	nucleolin	protein-coding
chr8.22480546.+	chr8	22480546	22480547	+	0	NA	"intron (NM_018688, intron 8 of 8)"	"intron (NM_018688, intron 8 of 8)"	18007	NM_021174	57805	Hs.433722	NM_199205	ENSG00000158941	KIAA1967	DBC-1|DBC1|NET35|p30 DBC|p30DBC	KIAA1967	protein-coding
chr10.12594929.+	chr10	12594929	12594930	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx|SINE|Alu	-25823	NR_039700	100616151		NR_039700		MIR4480	-	microRNA 4480	miscRNA
chr7.20445224.+	chr7	20445224	20445225	+	0	NA	"intron (NM_002214, intron 11 of 13)"	AluY|SINE|Alu	74499	NM_002214	3696	Hs.592171	NM_002214		ITGB8	-	"integrin, beta 8"	protein-coding
chrX.20694416.+	chrX	20694416	20694417	+	0	NA	Intergenic	AluY|SINE|Alu	-409666	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr16.29422161.+	chr16	29422161	29422162	+	0	NA	Intergenic	AluSx|SINE|Alu	-38505	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr12.53658241.-	chr12	53658241	53658242	-	0	NA	Intergenic	AluY|SINE|Alu	3842	NM_012291	9700	Hs.153479	NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies homolog 1 (S. cerevisiae)	protein-coding
chr6.150275511.+	chr6	150275511	150275512	+	0	NA	Intergenic	CpG	-9632	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr13.22176009.-	chr13	22176009	22176010	-	0	NA	"intron (NM_152726, intron 1 of 11)"	AluSc5|SINE|Alu	-2346	NM_152726	221154	Hs.412103	NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
chr3.134320478.+	chr3	134320478	134320479	+	0	NA	"3' UTR (NM_178554, exon 11 of 11)"	"3' UTR (NM_178554, exon 11 of 11)"	49386	NM_178554	339855	Hs.146730	NM_178554		KY	-	kyphoscoliosis peptidase	protein-coding
chr5.3764373.-	chr5	3764373	3764374	-	0	NA	Intergenic	Intergenic	-168205	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr8.56889617.+	chr8	56889617	56889618	+	0	NA	"intron (NM_002350, intron 10 of 12)"	AluSq|SINE|Alu	96843	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr22.51001367.+	chr22	51001367	51001368	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-39	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.160239906.-	chr1	160239906	160239907	-	0	NA	Intergenic	AluJo|SINE|Alu	7556	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr22.22259570.-	chr22	22259570	22259571	-	0	NA	Intergenic	AluSq2|SINE|Alu	37600	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr19.7929665.+	chr19	7929665	7929666	+	0	NA	"3' UTR (NM_001159944, exon 19 of 19)"	"3' UTR (NM_001159944, exon 19 of 19)"	9661	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr2.241363402.+	chr2	241363402	241363403	+	0	NA	Intergenic	Intergenic	-11713	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr7.104040210.-	chr7	104040210	104040211	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71106	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr15.78423585.-	chr15	78423585	78423586	-	0	NA	"5' UTR (NM_006383, exon 1 of 6)"	"5' UTR (NM_006383, exon 1 of 6)"	-292	NM_001271889	10518	Hs.129867	NM_001271888	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
chr6.25384352.+	chr6	25384352	25384353	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104696	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr18.70912403.-	chr18	70912403	70912404	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19330	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr1.21893042.-	chr1	21893042	21893043	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57184	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr16.3755328.-	chr16	3755328	3755329	-	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	-12270	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr3.44743391.-	chr3	44743391	44743392	-	0	NA	Intergenic	AluY|SINE|Alu	10744	NM_001134442	91392	Hs.224843	NM_001134440	ENSG00000196653	ZNF502	-	zinc finger protein 502	protein-coding
chr10.129196001.-	chr10	129196001	129196002	-	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	151612	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr10.28821807.-	chr10	28821807	28821808	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-385	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr20.13910563.-	chr20	13910563	13910564	-	0	NA	"intron (NR_073207, intron 3 of 18)"	AluSx|SINE|Alu	-60702	NR_073206	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding
chr1.7831800.-	chr1	7831800	7831801	-	0	NA	"intron (NM_004781, intron 1 of 4)"	CpG	-471	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr17.79427765.-	chr17	79427765	79427766	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9551	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr19.15718050.-	chr19	15718050	15718051	-	0	NA	Intergenic	AluY|SINE|Alu	7979	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr14.53133505.+	chr14	53133505	53133506	+	0	NA	"intron (NM_014584, intron 6 of 15)"	AluSz|SINE|Alu	28914	NM_014584	30001	Hs.592304	NM_014584		ERO1L	ERO1-alpha|ERO1A	ERO1-like (S. cerevisiae)	protein-coding
chr21.43198279.-	chr21	43198279	43198280	-	0	NA	Intergenic	Intergenic	11030	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr8.1455288.-	chr8	1455288	1455289	-	0	NA	"intron (NM_004745, intron 1 of 11)"	LTR12C|LTR|ERV1	-5756	NM_004745	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr6.42510167.-	chr6	42510167	42510168	-	0	NA	Intergenic	AluY|SINE|Alu	21593	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr16.70148600.-	chr16	70148600	70148601	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1071	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chrX.144903004.-	chrX	144903004	144903005	-	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	-138	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr11.92637346.-	chr11	92637346	92637347	-	0	NA	Intergenic	AluY|SINE|Alu	65443	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr2.239047377.-	chr2	239047377	239047378	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-14	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr12.133081800.-	chr12	133081800	133081801	-	0	NA	"intron (NM_001142641, intron 1 of 16)"	"intron (NM_001142641, intron 1 of 16)"	-14643	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr9.88491245.-	chr9	88491245	88491246	-	0	NA	Intergenic	AluYc|SINE|Alu	64812	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr9.29188729.-	chr9	29188729	29188730	-	0	NA	"intron (NM_001258282, intron 1 of 6)"	SVA_D|Other|Other	-24269	NM_001258282	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr3.60485399.+	chr3	60485399	60485400	+	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	751734	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr6.168443355.-	chr6	168443355	168443356	-	0	NA	"exon (NM_030615, exon 8 of 9)"	"exon (NM_030615, exon 8 of 9)"	-24802	NM_005355	3834	Hs.150013	NM_005355	ENSG00000125337	KIF25	KNSL3	kinesin family member 25	protein-coding
chr14.101679092.+	chr14	101679092	101679093	+	0	NA	Intergenic	AluSx1|SINE|Alu	142844	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr11.118481541.-	chr11	118481541	118481542	-	0	NA	"intron (NM_001144759, intron 1 of 20)"	CpG	-3235	NM_001144758	23187	Hs.504062	NM_001144758	ENSG00000019144	PHLDB1	LL5A	"pleckstrin homology-like domain, family B, member 1"	protein-coding
chr13.50138618.-	chr13	50138618	50138619	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21101	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr12.34492637.+	chr12	34492637	34492638	+	0	NA	Intergenic	GSATII|Satellite|centr	317421	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr6.33811467.-	chr6	33811467	33811468	-	0	NA	Intergenic	LTR33|LTR|ERVL	39674	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr7.1542305.-	chr7	1542305	1542306	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1713	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr5.14460468.-	chr5	14460468	14460469	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121423	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr15.76627308.-	chr15	76627308	76627309	-	0	NA	Intergenic	AluSg|SINE|Alu	1839	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr2.176947699.-	chr2	176947699	176947700	-	0	NA	"intron (NM_001080458, intron 1 of 2)"	CpG-15746	-991	NM_001080458	344191	Hs.452341	NM_001080458		EVX2	EVX-2	even-skipped homeobox 2	protein-coding
chrM.12255.-	chrM	12255	12256	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.12831717.+	chr19	12831717	12831718	+	0	NA	"exon (NM_013433, exon 2 of 25)"	"exon (NM_013433, exon 2 of 25)"	1388	NM_013433	30000	Hs.714402	NM_001136195	ENSG00000105576	TNPO2	IPO3|KPNB2B|TRN2	transportin 2	protein-coding
chr7.91257053.+	chr7	91257053	91257054	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252963	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr5.1137809.-	chr5	1137809	1137810	-	0	NA	Intergenic	Intergenic	25637	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr9.14963538.-	chr9	14963538	14963539	-	0	NA	Intergenic	LTR12_|LTR|ERV1	29787	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
chr12.129892182.-	chr12	129892182	129892183	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496030	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr2.64811864.-	chr2	64811864	64811865	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22582	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr2.241622534.-	chr2	241622534	241622535	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	217	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr20.33005295.-	chr20	33005295	33005296	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	48835	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr19.44119602.+	chr19	44119602	44119603	+	0	NA	TTS (NM_001145641)	TTS (NM_001145641)	3349	NM_001145641	100170229	Hs.722032	NM_001145641	ENSG00000226763	SRRM5	ZNF576	serine/arginine repetitive matrix 5	protein-coding
chr8.110510472.-	chr8	110510472	110510473	-	0	NA	"intron (NM_177531, intron 65 of 77)"	AluYb8|SINE|Alu	41457	NM_198120	9166	Hs.409368	NM_004215	ENSG00000147654	EBAG9	EB9|PDAF|RCAS1	"estrogen receptor binding site associated, antigen, 9"	protein-coding
chr5.171395321.-	chr5	171395321	171395322	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38556	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr1.77440751.-	chr1	77440751	77440752	-	0	NA	"intron (NM_030965, intron 2 of 4)"	AluSq|SINE|Alu	-107565	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5"	protein-coding
chr6.160985710.-	chr6	160985710	160985711	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53554	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr2.120282014.-	chr2	120282014	120282015	-	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	-14	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr4.151970191.-	chr4	151970191	151970192	-	0	NA	Intergenic	LTR1|LTR|ERV1	33542	NM_006726	987	Hs.480938	NM_001199282	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA	"LPS-responsive vesicle trafficking, beach and anchor containing"	protein-coding
chr17.45078373.+	chr17	45078373	45078374	+	0	NA	Intergenic	AluSg4|SINE|Alu	-21759	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr4.65343990.+	chr4	65343990	65343991	+	0	NA	Intergenic	AluY|SINE|Alu	-68812	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr22.18251494.-	chr22	18251494	18251495	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4469	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr16.30960882.-	chr16	30960882	30960883	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-477	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr17.18575666.+	chr17	18575666	18575667	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	828	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr10.81146789.-	chr10	81146789	81146790	-	0	NA	"intron (NM_153367, intron 3 of 3)"	"intron (NM_153367, intron 3 of 3)"	-39569	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr17.79918141.+	chr17	79918141	79918142	+	0	NA	"intron (NM_178493, intron 1 of 10)"	CpG-11382	916	NM_178493	147111	Hs.106137	NM_178493	ENSG00000185269	NOTUM	-	notum pectinacetylesterase homolog (Drosophila)	protein-coding
chr22.43044997.-	chr22	43044997	43044998	-	0	NA	"intron (NM_000398, intron 1 of 8)"	"intron (NM_000398, intron 1 of 8)"	-408	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chr16.12210387.+	chr16	12210387	12210388	+	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	139785	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr10.16780307.-	chr10	16780307	16780308	-	0	NA	"intron (NM_012425, intron 7 of 8)"	AluYk4|SINE|Alu	-79146	NM_152724	6251	Hs.524161	NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
chr16.70148608.-	chr16	70148608	70148609	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1079	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr20.4729612.-	chr20	4729612	4729613	-	0	NA	Intergenic	Intergenic	8298	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chrX.18849784.+	chrX	18849784	18849785	+	0	NA	Intergenic	AluY|SINE|Alu	-58630	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr12.118079871.+	chr12	118079871	118079872	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280264	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr3.128194245.-	chr3	128194245	128194246	-	0	NA	Intergenic	Intergenic	8154	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr22.31732652.-	chr22	31732652	31732653	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9597	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr21.43198238.+	chr21	43198238	43198239	+	0	NA	Intergenic	Intergenic	-10989	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chrX.48975598.+	chrX	48975598	48975599	+	0	NA	"intron (NM_015698, intron 4 of 10)"	AluY|SINE|Alu	4481	NM_015698	27238	Hs.503666	NM_015698		GPKOW	GPATC5|GPATCH5|Spp2|T54	G patch domain and KOW motifs	protein-coding
chr1.32122146.-	chr1	32122146	32122147	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11308	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr19.3220555.-	chr19	3220555	3220556	-	0	NA	Intergenic	AluSz|SINE|Alu	4146	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr17.37009798.-	chr17	37009798	37009799	-	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	-255	NM_000978	9349	Hs.406300	NM_000978		RPL23	L23|rpL17	ribosomal protein L23	protein-coding
chr7.1570451.-	chr7	1570451	1570452	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-83	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr5.103114748.-	chr5	103114748	103114749	-	0	NA	Intergenic	LTR12D|LTR|ERV1	216258	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr8.89875646.+	chr8	89875646	89875647	+	0	NA	Intergenic	AluY|SINE|Alu	-535929	NM_005941	4325	Hs.546267	NM_005941		MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16 (membrane-inserted)	protein-coding
chr15.41539531.+	chr15	41539531	41539532	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16094	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr13.19449406.+	chr13	19449406	19449407	+	0	NA	Intergenic	REP522|Satellite|telo	-3297	NR_027995	284232	Hs.742626	NR_027995		ANKRD20A9P	-	"ankyrin repeat domain 20 family, member A9, pseudogene"	pseudo
chr6.114067420.-	chr6	114067420	114067421	-	0	NA	Intergenic	AluY|SINE|Alu	111107	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chrX.81762793.+	chrX	81762793	81762794	+	0	NA	Intergenic	AluY|SINE|Alu	-1000476	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr14.103988597.-	chr14	103988597	103988598	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-599	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr21.35774213.-	chr21	35774213	35774214	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26464	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr17.8061097.-	chr17	8061097	8061098	-	0	NA	Intergenic	AluSx|SINE|Alu	-5196	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr7.45750442.-	chr7	45750442	45750443	-	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	-58175	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr11.113666006.+	chr11	113666006	113666007	+	0	NA	Intergenic	AluSx|SINE|Alu	15488	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr3.192348502.+	chr3	192348502	192348503	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96886	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr3.42642509.+	chr3	42642509	42642510	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	63	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr6.4780660.-	chr6	4780660	4780661	-	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	-3980	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr2.96149436.-	chr2	96149436	96149437	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1043	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr10.69822246.+	chr10	69822246	69822247	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12857	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr14.77227712.+	chr14	77227712	77227713	+	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	-523	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr4.1626801.-	chr4	1626801	1626802	-	0	NA	Intergenic	CpG	-58917	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr6.90529840.+	chr6	90529840	90529841	+	0	NA	promoter-TSS (NM_014611)	promoter-TSS (NM_014611)	-398	NM_014611	23195	Hs.529948	NM_014611	ENSG00000112159	MDN1	-	"MDN1, midasin homolog (yeast)"	protein-coding
chr21.43198266.-	chr21	43198266	43198267	-	0	NA	Intergenic	Intergenic	11017	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr17.37314173.+	chr17	37314173	37314174	+	0	NA	"intron (NM_001143968, intron 5 of 5)"	AluY|SINE|Alu	-6271	NM_020405	57125	Hs.125036	NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
chr5.171615306.+	chr5	171615306	171615307	+	0	NA	promoter-TSS (NM_005990)	promoter-TSS (NM_005990)	40	NM_005990	6793	Hs.744005	NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
chr7.158268197.-	chr7	158268197	158268198	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57308	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr5.176292821.+	chr5	176292821	176292822	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33512	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr3.37329884.+	chr3	37329884	37329885	+	0	NA	"intron (NM_002078, intron 4 of 23)"	AluSg|SINE|Alu	45202	NM_001172713	2803	Hs.344151	NM_001172713	ENSG00000144674	GOLGA4	GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
chr16.71647918.-	chr16	71647918	71647919	-	0	NA	Intergenic	AluSz|SINE|Alu	12138	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr1.12040439.+	chr1	12040439	12040440	+	0	NA	"5' UTR (NM_014874, exon 1 of 19)"	"5' UTR (NM_014874, exon 1 of 19)"	201	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr14.105242481.+	chr14	105242481	105242482	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17457	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr20.62172851.-	chr20	62172851	62172852	-	0	NA	"exon (NM_080823, exon 6 of 8)"	"exon (NM_080823, exon 6 of 8)"	4128	NM_001256358	5753	Hs.51133	NM_001256358	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
chr20.19620541.-	chr20	19620541	19620542	-	0	NA	"intron (NM_020689, intron 6 of 16)"	LTR12C|LTR|ERV1	246624	NM_001242581	54453	Hs.472270	NM_001242581	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
chr5.32209045.+	chr5	32209045	32209046	+	0	NA	Intergenic	SVA_F|Other|Other	-34620	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
chr5.176829683.+	chr5	176829683	176829684	+	0	NA	"exon (NM_000505, exon 13 of 14)"	"exon (NM_000505, exon 13 of 14)"	-2046	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
chr4.185174130.-	chr4	185174130	185174131	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35016	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr9.135947016.+	chr9	135947016	135947017	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9651	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr6.126100223.-	chr6	126100223	126100224	-	0	NA	Intergenic	AluY|SINE|Alu	2084	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr3.188566609.-	chr3	188566609	188566610	-	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	323154	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr19.48381908.-	chr19	48381908	48381909	-	0	NA	"intron (NM_003167, intron 4 of 5)"	AluSg4|SINE|Alu	-7746	NM_003167	6822	Hs.515835	NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa	"sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1"	protein-coding
chr19.18057758.+	chr19	18057758	18057759	+	0	NA	Intergenic	AluSx|SINE|Alu	-4353	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr2.47168670.+	chr2	47168670	47168671	+	0	NA	"5' UTR (NM_020458, exon 1 of 20)"	"5' UTR (NM_020458, exon 1 of 20)"	324	NM_001171508	90411	Hs.662152	NM_001171506	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
chr14.23706419.+	chr14	23706419	23706420	+	0	NA	Intergenic	AluSz|SINE|Alu	48890	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr8.86574489.+	chr8	86574489	86574490	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	253	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr7.157234745.-	chr7	157234745	157234746	-	0	NA	Intergenic	CpG	-105034	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chrX.133328813.+	chrX	133328813	133328814	+	0	NA	Intergenic	AluSg|SINE|Alu	-24505	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr12.120856950.-	chr12	120856950	120856951	-	0	NA	Intergenic	AluSz|SINE|Alu	18943	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr11.46919677.-	chr11	46919677	46919678	-	0	NA	"intron (NM_002334, intron 7 of 37)"	SVA_D|Other|Other	-20496	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
chrX.18849777.-	chrX	18849777	18849778	-	0	NA	Intergenic	AluY|SINE|Alu	58637	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr17.42148118.+	chr17	42148118	42148119	+	0	NA	promoter-TSS (NM_138387)	promoter-TSS (NM_138387)	20	NM_138387	92579	Hs.294005	NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	"glucose 6 phosphatase, catalytic, 3"	protein-coding
chr11.843837.+	chr11	843837	843838	+	0	NA	promoter-TSS (NM_001025237)	promoter-TSS (NM_001025237)	-244	NM_001025234	7106	Hs.654836	NM_001025234	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
chr15.66993587.+	chr15	66993587	66993588	+	0	NA	Intergenic	CpG	-1087	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr13.98891886.+	chr13	98891886	98891887	+	0	NA	"intron (NM_005766, intron 2 of 26)"	"intron (NM_005766, intron 2 of 26)"	31108	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	-	microRNA 3170	miscRNA
chr2.240401989.+	chr2	240401989	240401990	+	0	NA	Intergenic	Intergenic	-79346	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr22.46476321.+	chr22	46476321	46476322	+	0	NA	Intergenic	Intergenic	-5556	NR_027033	400931	Hs.235838	NR_027033	ENSG00000197182	MIRLET7BHG	RP4-695O20__B.10	MIRLET7B host gene (non-protein coding)	miscRNA
chrM.6553.+	chrM	6553	6554	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr7.139118458.+	chr7	139118458	139118459	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6186	NR_033999	100129148	Hs.744449	NR_033999		LOC100129148	-	uncharacterized LOC100129148	miscRNA
chr3.194483963.-	chr3	194483963	194483964	-	0	NA	"intron (NR_037891, intron 3 of 3)"	AluSx|SINE|Alu	-54813	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	miscRNA
chr18.77560860.-	chr18	77560860	77560861	-	0	NA	Intergenic	Intergenic	62808	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr11.134624861.-	chr11	134624861	134624862	-	0	NA	Intergenic	Intergenic	-318485	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr9.107727040.-	chr9	107727040	107727041	-	0	NA	Intergenic	AluYa5|SINE|Alu	36513	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr1.65991628.-	chr1	65991628	65991629	-	0	NA	"intron (NM_001198688, intron 1 of 18)"	CpG	-256	NM_001198689	3953	Hs.723178	NM_001003679	ENSG00000116678	LEPR	CD295|LEP-R|LEPRD|OB-R|OBR	leptin receptor	protein-coding
chr7.5610953.+	chr7	5610953	5610954	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21483	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr3.48541631.+	chr3	48541631	48541632	+	0	NA	promoter-TSS (NM_016479)	promoter-TSS (NM_016479)	51	NM_001272065	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr20.61443862.+	chr20	61443862	61443863	+	0	NA	"exon (NM_007346, exon 7 of 7)"	"exon (NM_007346, exon 7 of 7)"	-4552	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chr3.126260585.-	chr3	126260585	126260586	-	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	-17173	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr14.106358691.+	chr14	106358691	106358692	+	0	NA	Intergenic	Intergenic	-25147	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr4.26589742.-	chr4	26589742	26589743	-	0	NA	"intron (NM_018317, intron 1 of 20)"	AluY|SINE|Alu	-4196	NM_018317	55296	Hs.479403	NM_018317	ENSG00000109680	TBC1D19	-	"TBC1 domain family, member 19"	protein-coding
chr10.131146835.-	chr10	131146835	131146836	-	0	NA	Intergenic	Intergenic	118619	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
chr17.79503730.-	chr17	79503730	79503731	-	0	NA	"exon (NM_001077182, exon 4 of 5)"	"exon (NM_001077182, exon 4 of 5)"	-8313	NM_012418	25794	Hs.118555	NM_001077182	ENSG00000186765	FSCN2	RFSN|RP30	"fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)"	protein-coding
chr2.48811040.+	chr2	48811040	48811041	+	0	NA	"intron (NM_172311, intron 2 of 10)"	AluSg|SINE|Alu	3314	NM_001198594	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr2.128432631.-	chr2	128432631	128432632	-	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	-133	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr16.31103082.-	chr16	31103082	31103083	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	2952	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr15.41687842.-	chr15	41687842	41687843	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6816	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr10.121799471.+	chr10	121799471	121799472	+	0	NA	Intergenic	AluSz6|SINE|Alu	81446	NR_039830	100616322		NR_039830	ENSG00000265370	MIR4682	-	microRNA 4682	miscRNA
chr16.11747036.-	chr16	11747036	11747037	-	0	NA	Intergenic	AluSx1|SINE|Alu	15253	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr18.77627588.-	chr18	77627588	77627589	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3920	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr5.150603260.-	chr5	150603260	150603261	-	0	NA	"intron (NM_015621, intron 1 of 8)"	CpG	-394	NM_015621	26112	Hs.655336	NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
chr9.141038910.-	chr9	141038910	141038911	-	0	NA	Intergenic	Intergenic	5655	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr6.165205825.-	chr6	165205825	165205826	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517286	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr19.35418171.+	chr19	35418171	35418172	+	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	364	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr5.17207835.+	chr5	17207835	17207836	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9097	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr1.212962761.+	chr1	212962761	212962762	+	0	NA	"intron (NM_015471, intron 1 of 5)"	AluSq2|SINE|Alu	2378	NM_015471	25936	Hs.497692	NM_001042549		NSL1	C1orf48|MIS14	"NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr3.188708050.+	chr3	188708050	188708051	+	0	NA	Intergenic	Intergenic	-181713	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr5.55379910.-	chr5	55379910	55379911	-	0	NA	Intergenic	AluY|SINE|Alu	89089	NM_001190981	3572	Hs.706627	NM_001190981	ENSG00000134352	IL6ST	CD130|CDW130|GP130|IL-6RB	"interleukin 6 signal transducer (gp130, oncostatin M receptor)"	protein-coding
chr18.14147163.+	chr18	14147163	14147164	+	0	NA	Intergenic	Intergenic	-14674	NR_033354	162655	Hs.352635	NM_145287		ZNF519	HsT2362	zinc finger protein 519	protein-coding
chr20.52741101.+	chr20	52741101	52741102	+	0	NA	Intergenic	AluSx1|SINE|Alu	49415	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chrX.39680410.-	chrX	39680410	39680411	-	0	NA	Intergenic	CpG	-276309	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.34287519.+	chr19	34287519	34287520	+	0	NA	promoter-TSS (NM_001129995)	promoter-TSS (NM_001129995)	-232	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr5.92346156.+	chr5	92346156	92346157	+	0	NA	Intergenic	AluSq2|SINE|Alu	560343	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr3.132757867.+	chr3	132757867	132757868	+	0	NA	"intron (NM_023943, intron 1 of 5)"	CpG	696	NM_023943	66000	Hs.191616	NM_001136469	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
chr1.3037344.+	chr1	3037344	3037345	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-7195	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr6.127845914.-	chr6	127845914	127845915	-	0	NA	Intergenic	AluY|SINE|Alu	5414	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chrX.129231019.-	chrX	129231019	129231020	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13456	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chrX.53808319.-	chrX	53808319	53808320	-	0	NA	Intergenic	AluYb8|SINE|Alu	94622	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr10.20251645.-	chr10	20251645	20251646	-	0	NA	"intron (NM_032812, intron 1 of 13)"	AluY|SINE|Alu	-146273	NM_032812	84898	Hs.658134	NM_032812	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
chr6.150500569.-	chr6	150500569	150500570	-	0	NA	"intron (NM_030949, intron 1 of 3)"	G-rich|Low_complexity|Low_complexity	-36381	NM_030949	81706	Hs.486798	NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	"protein phosphatase 1, regulatory (inhibitor) subunit 14C"	protein-coding
chr17.43255862.-	chr17	43255862	43255863	-	0	NA	Intergenic	AluY|SINE|Alu	-17598	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr5.82729597.+	chr5	82729597	82729598	+	0	NA	Intergenic	AluSp|SINE|Alu	-37896	NM_001164097	1462	Hs.643801	NM_001126336	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
chr2.43254190.-	chr2	43254190	43254191	-	0	NA	Intergenic	Intergenic	-199555	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr1.247470016.-	chr1	247470016	247470017	-	0	NA	"intron (NM_032752, intron 8 of 8)"	AluSx1|SINE|Alu	-25029	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr7.13141827.+	chr7	13141827	13141828	+	0	NA	Intergenic	SVA_D|Other|Other	414916	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr12.26055505.-	chr12	26055505	26055506	-	0	NA	Intergenic	AluSc8|SINE|Alu	28493	NR_036188	100422897		NR_036188		MIR4302	-	microRNA 4302	miscRNA
chr9.137217351.-	chr9	137217351	137217352	-	0	NA	promoter-TSS (NM_002957)	promoter-TSS (NM_002957)	965	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr10.99019885.-	chr10	99019885	99019886	-	0	NA	"intron (NR_037909, intron 4 of 14)"	AluSc8|SINE|Alu	-10562	NM_001256423	84986	Hs.80305	NM_001204300	ENSG00000213390	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
chr16.1845057.+	chr16	1845057	1845058	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-148	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chrX.73788865.-	chrX	73788865	73788866	-	0	NA	Intergenic	SVA_D|Other|Other	-45596	NM_183353	51132	Hs.653288	NM_016120		RLIM	NY-REN-43|RNF12	"ring finger protein, LIM domain interacting"	protein-coding
chr19.5686508.-	chr19	5686508	5686509	-	0	NA	"exon (NM_001267868, exon 5 of 9)"	"exon (NM_001267868, exon 5 of 9)"	3764	NM_033643	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
chr9.14963531.-	chr9	14963531	14963532	-	0	NA	Intergenic	LTR12_|LTR|ERV1	29794	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
chr2.230579344.-	chr2	230579344	230579345	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	58	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr19.14508388.-	chr19	14508388	14508389	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16432	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr4.116121645.-	chr4	116121645	116121646	-	0	NA	Intergenic	LTR12C|LTR|ERV1	86613	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	NDST-4|NHSST4	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4	protein-coding
chr7.155246320.-	chr7	155246320	155246321	-	0	NA	Intergenic	Intergenic	4504	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr15.41539585.+	chr15	41539585	41539586	+	0	NA	"intron (NM_007236, intron 2 of 6)"	"intron (NM_007236, intron 2 of 6)"	16148	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr6.167788451.+	chr6	167788451	167788452	+	0	NA	"intron (NM_004610, intron 6 of 7)"	"intron (NM_004610, intron 6 of 7)"	9547	NM_004610	6953	Hs.351	NM_004610		TCP10	TCP10A	t-complex 10	protein-coding
chr12.8057402.-	chr12	8057402	8057403	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31490	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr17.8924893.-	chr17	8924893	8924894	-	0	NA	promoter-TSS (NM_004822)	promoter-TSS (NM_004822)	-34	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr15.56465894.-	chr15	56465894	56465895	-	0	NA	"intron (NM_022841, intron 2 of 8)"	AluSq|SINE|Alu	-69589	NM_022841	64864	Hs.282855	NM_022841	ENSG00000181827	RFX7	RFXDC2	"regulatory factor X, 7"	protein-coding
chr1.61398371.-	chr1	61398371	61398372	-	0	NA	Intergenic	AluY|SINE|Alu	144575	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr17.15122384.-	chr17	15122384	15122385	-	0	NA	Intergenic	AluY|SINE|Alu	-32629	NR_039884	100616125		NR_039884		MIR4731	-	microRNA 4731	miscRNA
chrX.15780404.-	chrX	15780404	15780405	-	0	NA	"intron (NM_007220, intron 2 of 7)"	AluSz|SINE|Alu	-23992	NM_007220	11238	Hs.744128	NM_007220	ENSG00000169239	CA5B	CA-VB	"carbonic anhydrase VB, mitochondrial"	protein-coding
chr12.121338281.-	chr12	121338281	121338282	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	-3874	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr12.131127781.+	chr12	131127781	131127782	+	0	NA	Intergenic	Intergenic	-125371	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr6.21897092.-	chr6	21897092	21897093	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230417	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr1.45937941.+	chr1	45937941	45937942	+	0	NA	"intron (NM_007170, intron 1 of 10)"	"intron (NM_007170, intron 1 of 10)"	18899	NM_007170	10420	Hs.591499	NM_007170	ENSG00000070759	TESK2	-	testis-specific kinase 2	protein-coding
chr20.37554773.-	chr20	37554773	37554774	-	0	NA	promoter-TSS (NM_030919)	promoter-TSS (NM_030919)	182	NM_030919	81610	Hs.726442	NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	"family with sequence similarity 83, member D"	protein-coding
chr12.56579389.-	chr12	56579389	56579390	-	0	NA	"intron (NM_003075, intron 3 of 27)"	AluSx1|SINE|Alu	-3962	NM_139067	6601	Hs.632717	NM_001130420		SMARCC2	BAF170|CRACC2|Rsc8	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2"	protein-coding
chr5.180070541.-	chr5	180070541	180070542	-	0	NA	"intron (NM_002020, intron 1 of 29)"	L2c|LINE|L2	-6083	NM_182925	2324	Hs.646917	NM_002020	ENSG00000037280	FLT4	FLT41|LMPH1A|PCL|VEGFR3	fms-related tyrosine kinase 4	protein-coding
chr1.2157791.-	chr1	2157791	2157792	-	0	NA	Intergenic	AluJb|SINE|Alu	2343	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr2.175183574.-	chr2	175183574	175183575	-	0	NA	Intergenic	AluSq2|SINE|Alu	7181	NR_038897	285084	Hs.275398	NR_038897	ENSG00000231453	LOC285084	-	uncharacterized LOC285084	miscRNA
chr22.18251637.-	chr22	18251637	18251638	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4612	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr8.22594692.-	chr8	22594692	22594693	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43877	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr13.26145069.+	chr13	26145069	26145070	+	0	NA	"intron (NM_016529, intron 17 of 36)"	"intron (NM_016529, intron 17 of 36)"	198860	NM_016529	51761	Hs.444957	NM_016529		ATP8A2	ATP|ATPIB|IB|ML-1	"ATPase, aminophospholipid transporter, class I, type 8A, member 2"	protein-coding
chr2.31691895.+	chr2	31691895	31691896	+	0	NA	Intergenic	AluY|SINE|Alu	-54284	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr1.32122135.+	chr1	32122135	32122136	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11297	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr3.93689362.-	chr3	93689362	93689363	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3572	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr3.42642384.-	chr3	42642384	42642385	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-188	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr16.619907.-	chr16	619907	619908	-	0	NA	promoter-TSS (NM_148920)	promoter-TSS (NM_148920)	61	NM_148920	9091	Hs.741878	NM_004204	ENSG00000007541	PIGQ	GPI1|c407A10.1	"phosphatidylinositol glycan anchor biosynthesis, class Q"	protein-coding
chr10.69628873.-	chr10	69628873	69628874	-	0	NA	Intergenic	AluSx|SINE|Alu	15554	NM_012238	23411	Hs.369779	NM_001142498	ENSG00000096717	SIRT1	SIR2L1	sirtuin 1	protein-coding
chrX.81762740.+	chrX	81762740	81762741	+	0	NA	Intergenic	AluY|SINE|Alu	-1000529	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr10.104209679.-	chr10	104209679	104209680	-	0	NA	TTS (NM_024886)	TTS (NM_024886)	-105	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr16.88257873.+	chr16	88257873	88257874	+	0	NA	Intergenic	Intergenic	-236006	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr3.184790715.+	chr3	184790715	184790716	+	0	NA	Intergenic	Intergenic	80087	NM_001025266	285382	Hs.380048	NM_001025266	ENSG00000187068	C3orf70	-	chromosome 3 open reading frame 70	protein-coding
chr17.46187025.+	chr17	46187025	46187026	+	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	2078	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr10.102153589.-	chr10	102153589	102153590	-	0	NA	Intergenic	AluSq2|SINE|Alu	-20256	NR_026762	90271	Hs.628088	NR_026762		LINC00263	C10orf75|NCRNA00263	long intergenic non-protein coding RNA 263	miscRNA
chr22.20860472.-	chr22	20860472	20860473	-	0	NA	Intergenic	AluSg4|SINE|Alu	1414	NM_001003891	51586	Hs.517421	NM_001003891	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
chr2.196316368.+	chr2	196316368	196316369	+	0	NA	Intergenic	AluSc|SINE|Alu	-205164	NM_001127257	57181	Hs.650158	NM_001127257	ENSG00000196950	SLC39A10	LZT-Hs2	"solute carrier family 39 (zinc transporter), member 10"	protein-coding
chr14.69620198.-	chr14	69620198	69620199	-	0	NA	promoter-TSS (NM_003861)	promoter-TSS (NM_003861)	284	NM_003861	8816	Hs.509780	NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
chr1.153574166.-	chr1	153574166	153574167	-	0	NA	Intergenic	AluY|SINE|Alu	-11348	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr19.5229515.-	chr19	5229515	5229516	-	0	NA	"exon (NM_002850, exon 15 of 38)"	"exon (NM_002850, exon 15 of 38)"	-111299	NM_002850	5802	Hs.644384	NM_002850	ENSG00000105426	PTPRS	PTPSIGMA	"protein tyrosine phosphatase, receptor type, S"	protein-coding
chr22.34378928.-	chr22	34378928	34378929	-	0	NA	Intergenic	AluSx1|SINE|Alu	62512	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr2.219738455.+	chr2	219738455	219738456	+	0	NA	"exon (NM_006522, exon 4 of 4)"	"exon (NM_006522, exon 4 of 4)"	-6800	NM_025216	80326	Hs.121540	NM_025216	ENSG00000135925	WNT10A	OODD|SSPS|STHAG4	"wingless-type MMTV integration site family, member 10A"	protein-coding
chr11.70729770.+	chr11	70729770	70729771	+	0	NA	"intron (NM_012309, intron 8 of 22)"	"intron (NM_012309, intron 8 of 22)"	-11297	NR_037437	100500844		NR_037437		MIR3664	-	microRNA 3664	miscRNA
chr7.2774632.-	chr7	2774632	2774633	-	0	NA	"intron (NM_007353, intron 2 of 3)"	CpG	-55469	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr2.210472319.+	chr2	210472319	210472320	+	0	NA	"intron (NM_031845, intron 2 of 11)"	AluSx1|SINE|Alu	27916	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr18.46969357.-	chr18	46969357	46969358	-	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	-17722	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chrM.2644.-	chrM	2644	2645	-	0	NA	NA	LSU-rRNA_Hsa|rRNA|rRNA	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr14.102109470.-	chr14	102109470	102109471	-	0	NA	Intergenic	AluY|SINE|Alu	-81782	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr12.129892172.-	chr12	129892172	129892173	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496040	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr4.3270621.-	chr4	3270621	3270622	-	0	NA	Intergenic	Intergenic	-19854	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
chr10.134684070.-	chr10	134684070	134684071	-	0	NA	"intron (NM_001200049, intron 32 of 57)"	Tigger1|DNA|TcMar-Tigger	-72019	NM_001200049	54777	Hs.719815	NM_001200049	ENSG00000171811	TTC40	C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	tetratricopeptide repeat domain 40	protein-coding
chr17.4843341.+	chr17	4843341	4843342	+	0	NA	promoter-TSS (NM_015528)	promoter-TSS (NM_015528)	121	NM_003562	8402	Hs.184877	NM_001165417	ENSG00000108528	SLC25A11	OGC|SLC20A4	"solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11"	protein-coding
chr5.68358814.-	chr5	68358814	68358815	-	0	NA	Intergenic	SVA_D|Other|Other	30962	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr22.47558673.+	chr22	47558673	47558674	+	0	NA	"intron (NM_014346, intron 12 of 12)"	"intron (NM_014346, intron 12 of 12)"	400155	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr5.28928037.+	chr5	28928037	28928038	+	0	NA	TTS (NR_033961)	TTS (NR_033961)	1060	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chrM.9306.+	chrM	9306	9307	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr13.111268077.+	chr13	111268077	111268078	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	146	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr4.38809148.-	chr4	38809148	38809149	-	0	NA	Intergenic	SVA_D|Other|Other	2736	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr1.78230581.-	chr1	78230581	78230582	-	0	NA	Intergenic	AluSz|SINE|Alu	5017	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr11.68303172.+	chr11	68303172	68303173	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74986	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr14.23706366.+	chr14	23706366	23706367	+	0	NA	Intergenic	AluSz|SINE|Alu	48943	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr16.88637070.+	chr16	88637070	88637071	+	0	NA	"intron (NM_144604, intron 1 of 17)"	CpG	281	NM_144604	124245	Hs.93670	NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
chr2.38825081.+	chr2	38825081	38825082	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5097	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr2.109409642.+	chr2	109409642	109409643	+	0	NA	"intron (NM_144978, intron 4 of 14)"	AluY|SINE|Alu	6423	NM_144978	165055	Hs.731709	NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
chr1.1522759.+	chr1	1522759	1522760	+	0	NA	Intergenic	AluSx|SINE|Alu	-12497	NM_014188	29101	Hs.549751	NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)	protein-coding
chr1.22213949.-	chr1	22213949	22213950	-	0	NA	"exon (NM_005529, exon 8 of 97)"	"exon (NM_005529, exon 8 of 97)"	-49801	NM_005529	3339	Hs.562227	NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
chr8.97190179.+	chr8	97190179	97190180	+	0	NA	Intergenic	AluY|SINE|Alu	-17159	NM_001001557	392255	Hs.492277	NM_001001557	ENSG00000156466	GDF6	BMP13|CDMP2|KFM|KFS|KFS1|KFSL|MCOP4|MCOPCB6|SCDO4|SGM1	growth differentiation factor 6	protein-coding
chr2.25390986.+	chr2	25390986	25390987	+	0	NA	"intron (NM_001035256, intron 1 of 3)"	AluSp|SINE|Alu	573	NM_000939	5443	Hs.1897	NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
chr12.27932722.-	chr12	27932722	27932723	-	0	NA	promoter-TSS (NM_020782)	promoter-TSS (NM_020782)	465	NM_020782	57542	Hs.505104	NM_020782	ENSG00000087448	KLHL42	Ctb9|KLHDC5	kelch-like family member 42	protein-coding
chr13.31023993.-	chr13	31023993	31023994	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16088	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr4.29715936.-	chr4	29715936	29715937	-	0	NA	Intergenic	AluY|SINE|Alu	-894732	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	miscRNA
chr17.2311346.+	chr17	2311346	2311347	+	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	-7088	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr20.33005296.-	chr20	33005296	33005297	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	48834	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr17.42869153.+	chr17	42869153	42869154	+	0	NA	Intergenic	AluY|SINE|Alu	32585	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr9.34329569.+	chr9	34329569	34329570	+	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	65	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr5.2515432.-	chr5	2515432	2515433	-	0	NA	Intergenic	Intergenic	-236337	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr9.16766079.-	chr9	16766079	16766080	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104707	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr11.99560009.-	chr11	99560009	99560010	-	0	NA	"intron (NM_175566, intron 1 of 21)"	AluY|SINE|Alu	-133133	NM_175566	53942	Hs.656783	NM_001243270	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
chr5.122861566.+	chr5	122861566	122861567	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13773	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr2.240129778.-	chr2	240129778	240129779	-	0	NA	"intron (NM_006037, intron 3 of 26)"	AluY|SINE|Alu	12625	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	miscRNA
chr10.6985586.+	chr10	6985586	6985587	+	0	NA	Intergenic	AluSx1|SINE|Alu	164026	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr16.13534742.+	chr16	13534742	13534743	+	0	NA	Intergenic	AluSc|SINE|Alu	-479272	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr10.101381178.+	chr10	101381178	101381179	+	0	NA	promoter-TSS (NM_031212)	promoter-TSS (NM_031212)	-957	NM_031212	81894	Hs.403790	NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L	"solute carrier family 25 (mitochondrial iron transporter), member 28"	protein-coding
chr13.112597811.-	chr13	112597811	112597812	-	0	NA	Intergenic	MIRc|SINE|MIR	124102	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr2.175827400.-	chr2	175827400	175827401	-	0	NA	"intron (NR_038133, intron 1 of 11)"	(G)n|Simple_repeat|Simple_repeat	-42581	NM_001822	1123	Hs.380138	NM_001025201	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
chr12.121338284.+	chr12	121338284	121338285	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3871	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr10.95605027.-	chr10	95605027	95605028	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48703	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr3.45704332.+	chr3	45704332	45704333	+	0	NA	"intron (NM_014240, intron 2 of 7)"	AluSx1|SINE|Alu	26042	NR_033947	644714	Hs.712889	NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	miscRNA
chr20.62657580.-	chr20	62657580	62657581	-	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	8117	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr18.66365984.-	chr18	66365984	66365985	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16369	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr19.49039245.-	chr19	49039245	49039246	-	0	NA	Intergenic	AluSc8|SINE|Alu	16184	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr17.80376635.-	chr17	80376635	80376636	-	0	NA	promoter-TSS (NM_024648)	promoter-TSS (NM_024648)	122	NM_175902	79701	Hs.187505	NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
chr14.94606696.+	chr14	94606696	94606697	+	0	NA	Intergenic	Intergenic	-10739	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chr4.1626661.+	chr4	1626661	1626662	+	0	NA	Intergenic	CpG	59057	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr16.57659288.-	chr16	57659288	57659289	-	0	NA	"intron (NM_001145770, intron 1 of 14)"	"intron (NM_001145770, intron 1 of 14)"	3131	NM_201525	9289	Hs.513633	NM_001145770	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
chrX.53123329.+	chrX	53123329	53123330	+	0	NA	Intergenic	CpG	11787	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.102327467.-	chr7	102327467	102327468	-	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	15291	NM_032959	246721	Hs.732239	NM_032959	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	polymerase (RNA) II (DNA directed) polypeptide J2	protein-coding
chr18.63211101.-	chr18	63211101	63211102	-	0	NA	Intergenic	AluY|SINE|Alu	206387	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr16.2176960.+	chr16	2176960	2176961	+	0	NA	"intron (NM_001009944, intron 1 of 45)"	"intron (NM_001009944, intron 1 of 45)"	-6160	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	-	microRNA 4516	miscRNA
chr21.43699096.+	chr21	43699096	43699097	+	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	36610	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr19.13497341.+	chr19	13497341	13497342	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119933	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr22.43045024.-	chr22	43045024	43045025	-	0	NA	"intron (NM_000398, intron 1 of 8)"	CpG	-381	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chr9.108210406.-	chr9	108210406	108210407	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-81	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr2.224810001.+	chr2	224810001	224810002	+	0	NA	promoter-TSS (NM_020830)	promoter-TSS (NM_020830)	51	NM_020830	57590	Hs.368359	NM_020830	ENSG00000085449	WDFY1	FENS-1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
chr7.6194289.+	chr7	6194289	6194290	+	0	NA	"exon (NM_032172, exon 15 of 18)"	"exon (NM_032172, exon 15 of 18)"	49739	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
chr2.210867458.+	chr2	210867458	210867459	+	0	NA	promoter-TSS (NM_199229)	promoter-TSS (NM_199229)	77	NM_199229	6120	Hs.282260	NM_006916	ENSG00000197713	RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
chr5.130605616.+	chr5	130605616	130605617	+	0	NA	"intron (NM_001038702, intron 1 of 4)"	AluSx|SINE|Alu	5914	NM_001038702	56990	Hs.713870	NM_001038702	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
chr17.7011312.-	chr17	7011312	7011313	-	0	NA	"intron (NM_001201352, intron 4 of 8)"	"intron (NM_001201352, intron 4 of 8)"	-6317	NM_080914	433	Hs.654440	NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
chr15.90792774.+	chr15	90792774	90792775	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	10	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr5.22326478.-	chr5	22326478	22326479	-	0	NA	"intron (NM_004061, intron 3 of 14)"	AluY|SINE|Alu	-184017	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr1.215227206.-	chr1	215227206	215227207	-	0	NA	"intron (NM_001017424, intron 1 of 6)"	AluSz6|SINE|Alu	29354	NM_001017425	3776	Hs.497745	NM_001017424	ENSG00000082482	KCNK2	K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e	"potassium channel, subfamily K, member 2"	protein-coding
chr9.36986667.+	chr9	36986667	36986668	+	0	NA	"intron (NM_016734, intron 5 of 9)"	CpG	47809	NM_016734	5079	Hs.654464	NM_016734		PAX5	BSAP	paired box 5	protein-coding
chr11.125936569.-	chr11	125936569	125936570	-	0	NA	Intergenic	AluY|SINE|Alu	3382	NM_001243597	50937	Hs.38034	NM_001243597	ENSG00000064309	CDON	CDO|CDON1|HPE11|ORCAM	"cell adhesion associated, oncogene regulated"	protein-coding
chr19.56578195.-	chr19	56578195	56578196	-	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-54454	NM_001002836	126208	Hs.397153	NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
chr9.141038907.-	chr9	141038907	141038908	-	0	NA	Intergenic	Intergenic	5658	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr22.18532541.+	chr22	18532541	18532542	+	0	NA	Intergenic	AluSx1|SINE|Alu	20390	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr13.25859717.-	chr13	25859717	25859718	-	0	NA	"intron (NM_004685, intron 1 of 13)"	AluSx1|SINE|Alu	-1987	NM_004685	9107	Hs.643702	NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
chr1.113336848.+	chr1	113336848	113336849	+	0	NA	Intergenic	MER70B|LTR|ERVL	73659	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr7.95181982.-	chr7	95181982	95181983	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-43943	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr6.114067428.+	chr6	114067428	114067429	+	0	NA	Intergenic	AluY|SINE|Alu	-111099	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr2.70133290.-	chr2	70133290	70133291	-	0	NA	TTS (NM_006857)	TTS (NM_006857)	8883	NM_001202514	4084	Hs.468908	NM_001202513	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
chr11.100596563.-	chr11	100596563	100596564	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38156	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr17.40536617.-	chr17	40536617	40536618	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3788	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr7.95178748.-	chr7	95178748	95178749	-	0	NA	Intergenic	AluY|SINE|Alu	-47177	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr18.66365976.-	chr18	66365976	66365977	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16377	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr17.76206900.+	chr17	76206900	76206901	+	0	NA	Intergenic	AluY|SINE|Alu	-3377	NM_001012271	332	Hs.514527	NM_001012270	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
chr19.9311327.+	chr19	9311327	9311328	+	0	NA	Intergenic	AluSc8|SINE|Alu	14220	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr7.100719586.-	chr7	100719586	100719587	-	0	NA	Intergenic	Intergenic	9200	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr14.102954934.+	chr14	102954934	102954935	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21194	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr11.617539.+	chr11	617539	617540	+	0	NA	"exon (NM_001171968, exon 15 of 15)"	"exon (NM_001171968, exon 15 of 15)"	-1540	NM_001572	3665	Hs.166120	NM_001572	ENSG00000185507	IRF7	IRF-7H|IRF7A	interferon regulatory factor 7	protein-coding
chr1.97029391.-	chr1	97029391	97029392	-	0	NA	Intergenic	AluSp|SINE|Alu	157784	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr21.47403568.-	chr21	47403568	47403569	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1905	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr1.200904648.+	chr1	200904648	200904649	+	0	NA	Intergenic	AluSx|SINE|Alu	40699	NM_001142569	55765	Hs.518997	NM_001142569	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
chr3.73614877.+	chr3	73614877	73614878	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59195	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr18.77560861.-	chr18	77560861	77560862	-	0	NA	Intergenic	Intergenic	62807	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr1.7952816.-	chr1	7952816	7952817	-	0	NA	Intergenic	AluSx1|SINE|Alu	39265	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr1.26761306.+	chr1	26761306	26761307	+	0	NA	"intron (NM_205861, intron 2 of 8)"	AluSx1|SINE|Alu	2533	NM_205861	79947	Hs.369385	NM_001243564	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase	protein-coding
chr2.71562005.+	chr2	71562005	71562006	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3120	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr7.1315911.-	chr7	1315911	1315912	-	0	NA	Intergenic	CpG	-43257	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr7.38566170.-	chr7	38566170	38566171	-	0	NA	"intron (NM_139316, intron 2 of 19)"	AluSz6|SINE|Alu	-104997	NM_139316	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
chr5.179373611.-	chr5	179373611	179373612	-	0	NA	Intergenic	AluY|SINE|Alu	38755	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr1.97799170.+	chr1	97799170	97799171	+	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	237691	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr13.21872274.-	chr13	21872274	21872275	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-10	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr11.17757357.-	chr11	17757357	17757358	-	0	NA	promoter-TSS (NM_001112741)	promoter-TSS (NM_001112741)	138	NM_001112741	3746	Hs.552896	NM_001112741	ENSG00000129159	KCNC1	KV3.1|KV4|NGK2	"potassium voltage-gated channel, Shaw-related subfamily, member 1"	protein-coding
chr16.69455167.-	chr16	69455167	69455168	-	0	NA	Intergenic	AluSq2|SINE|Alu	3331	NM_030579	80777	Hs.461131	NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B (outer mitochondrial membrane)	protein-coding
chr13.111268096.-	chr13	111268096	111268097	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-165	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr13.114069117.-	chr13	114069117	114069118	-	0	NA	Intergenic	AluSx1|SINE|Alu	-34340	NM_199162	113622	Hs.98669	NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
chr11.63976079.+	chr11	63976079	63976080	+	0	NA	"intron (NM_178443, intron 2 of 14)"	"intron (NM_178443, intron 2 of 14)"	1927	NM_031471	83706	Hs.180535	NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	fermitin family member 3	protein-coding
chr16.209959.-	chr16	209959	209960	-	0	NA	Intergenic	Intergenic	6014	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr7.64493649.+	chr7	64493649	64493650	+	0	NA	Intergenic	SVA_C|Other|Other	-5083	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr8.19626694.-	chr8	19626694	19626695	-	0	NA	Intergenic	AluSx1|SINE|Alu	48224	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr17.42869183.-	chr17	42869183	42869184	-	0	NA	Intergenic	AluY|SINE|Alu	-32615	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr2.96931859.+	chr2	96931859	96931860	+	0	NA	promoter-TSS (NM_001193304)	promoter-TSS (NM_001193304)	-25	NM_004804	9391	Hs.12109	NM_004804		CIAO1	CIA1|WDR39	cytosolic iron-sulfur protein assembly 1	protein-coding
chr20.62679734.+	chr20	62679734	62679735	+	0	NA	"exon (NM_018419, exon 2 of 2)"	"exon (NM_018419, exon 2 of 2)"	1245	NM_018419	54345	Hs.8619	NM_018419	ENSG00000203883	SOX18	HLTS	SRY (sex determining region Y)-box 18	protein-coding
chr20.62108075.+	chr20	62108075	62108076	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4082	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr20.62673853.+	chr20	62673853	62673854	+	0	NA	Intergenic	CpG	7126	NM_018419	54345	Hs.8619	NM_018419	ENSG00000203883	SOX18	HLTS	SRY (sex determining region Y)-box 18	protein-coding
chr21.35774118.-	chr21	35774118	35774119	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26369	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr22.42737066.-	chr22	42737066	42737067	-	0	NA	Intergenic	Intergenic	-71307	NR_036498	388906	Hs.730075	NR_036498	ENSG00000182057	LOC388906	-	opioid growth factor receptor pseudogene	pseudo
chr6.2221725.+	chr6	2221725	2221726	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24143	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr4.5892140.+	chr4	5892140	5892141	+	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	-1825	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr7.2544949.-	chr7	2544949	2544950	-	0	NA	Intergenic	Intergenic	7214	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr14.80915475.+	chr14	80915475	80915476	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-218078	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr19.55698634.-	chr19	55698634	55698635	-	0	NA	"intron (NM_002842, intron 14 of 19)"	AluY|SINE|Alu	6914	NM_003180	6861	Hs.631566	NM_003180		SYT5	-	synaptotagmin V	protein-coding
chr9.38705480.-	chr9	38705480	38705481	-	0	NA	Intergenic	AluY|SINE|Alu	-84395	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr18.68699015.-	chr18	68699015	68699016	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-547177	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr21.47838717.+	chr21	47838717	47838718	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40145	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr5.1770152.+	chr5	1770152	1770153	+	0	NA	Intergenic	L1MB5|LINE|L1	29804	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chrX.122910259.-	chrX	122910259	122910260	-	0	NA	Intergenic	AluJo|SINE|Alu	43355	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr17.73615836.-	chr17	73615836	73615837	-	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	13678	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr2.119939738.-	chr2	119939738	119939739	-	0	NA	Intergenic	Intergenic	23267	NM_182528	165257	Hs.433493	NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	"complement component 1, q subcomponent-like 2"	protein-coding
chr2.239129611.+	chr2	239129611	239129612	+	0	NA	Intergenic	MER52C|LTR|ERV1	10707	NR_026925	151174	Hs.424165	NR_026925	ENSG00000186235	LOC151174	-	uncharacterized LOC151174	miscRNA
chr13.80950515.-	chr13	80950515	80950516	-	0	NA	Intergenic	AluJb|SINE|Alu	35429	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr1.149646769.+	chr1	149646769	149646770	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70316	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr16.1123366.-	chr16	1123366	1123367	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-610	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr5.3188267.-	chr5	3188267	3188268	-	0	NA	Intergenic	CpG	-347941	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr1.227982955.+	chr1	227982955	227982956	+	0	NA	Intergenic	Intergenic	-20463	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr15.65670428.+	chr15	65670428	65670429	+	0	NA	promoter-TSS (NM_004884)	promoter-TSS (NM_004884)	-50	NM_004884	9543	Hs.128292	NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	"immunoglobulin superfamily, DCC subclass, member 3"	protein-coding
chr1.3803999.-	chr1	3803999	3804000	-	0	NA	Intergenic	AluY|SINE|Alu	-12858	NM_207356	339448	Hs.103939	NM_207356	ENSG00000198912	C1orf174	RP13-531C17.2	chromosome 1 open reading frame 174	protein-coding
chr7.45614877.+	chr7	45614877	45614878	+	0	NA	"intron (NM_021116, intron 1 of 19)"	CpG	752	NM_021116	107	Hs.192215	NM_021116	ENSG00000164742	ADCY1	AC1	adenylate cyclase 1 (brain)	protein-coding
chr4.185174125.+	chr4	185174125	185174126	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35011	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr20.24374761.-	chr20	24374761	24374762	-	0	NA	Intergenic	Intergenic	75074	NM_024893	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
chr4.187023545.-	chr4	187023545	187023546	-	0	NA	Intergenic	AluY|SINE|Alu	-33236	NM_003265	7098	Hs.657724	NM_003265	ENSG00000164342	TLR3	CD283|IIAE2	toll-like receptor 3	protein-coding
chr19.40696466.-	chr19	40696466	40696467	-	0	NA	Intergenic	AluSx|SINE|Alu	1185	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr10.102153622.-	chr10	102153622	102153623	-	0	NA	Intergenic	AluSq2|SINE|Alu	-20289	NR_026762	90271	Hs.628088	NR_026762		LINC00263	C10orf75|NCRNA00263	long intergenic non-protein coding RNA 263	miscRNA
chr22.30781365.+	chr22	30781365	30781366	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1937	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr8.107670050.-	chr8	107670050	107670051	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-14	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr8.41166065.+	chr8	41166065	41166066	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	925	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr10.7626426.-	chr10	7626426	7626427	-	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	-35210	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr6.55775071.-	chr6	55775071	55775072	-	0	NA	Intergenic	SVA_D|Other|Other	34696	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr9.135013574.-	chr9	135013574	135013575	-	0	NA	Intergenic	AluSz|SINE|Alu	23760	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr5.171395343.+	chr5	171395343	171395344	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38534	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr13.113764783.-	chr13	113764783	113764784	-	0	NA	"intron (NM_000131, intron 2 of 8)"	CpG	-4681	NM_019616	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII (serum prothrombin conversion accelerator)	protein-coding
chrX.53123330.+	chrX	53123330	53123331	+	0	NA	Intergenic	CpG	11788	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.131551539.+	chr12	131551539	131551540	+	0	NA	"intron (NM_198827, intron 13 of 24)"	"intron (NM_198827, intron 13 of 24)"	-98017	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr1.113336834.+	chr1	113336834	113336835	+	0	NA	Intergenic	MER70B|LTR|ERVL	73645	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr19.15718072.-	chr19	15718072	15718073	-	0	NA	Intergenic	AluY|SINE|Alu	7957	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr17.42602241.+	chr17	42602241	42602242	+	0	NA	Intergenic	SVA_D|Other|Other	-21284	NR_036474	23131	Hs.463129	NM_001002909		GPATCH8	GPATC8|KIAA0553	G patch domain containing 8	protein-coding
chr16.181433.-	chr16	181433	181434	-	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	-7264	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr22.51001386.-	chr22	51001386	51001387	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	58	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr22.51001369.+	chr22	51001369	51001370	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-41	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr3.196619084.+	chr3	196619084	196619085	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24357	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chrX.29933246.+	chrX	29933246	29933247	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300429	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr1.8021847.-	chr1	8021847	8021848	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-133	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr13.112666491.+	chr13	112666491	112666492	+	0	NA	Intergenic	Intergenic	-55422	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr1.97799194.+	chr1	97799194	97799195	+	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	237715	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr10.59080746.-	chr10	59080746	59080747	-	0	NA	Intergenic	AluY|SINE|Alu	16427	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chrX.48703102.-	chrX	48703102	48703103	-	0	NA	Intergenic	AluSx|SINE|Alu	9066	NM_013271	27344	Hs.522640	NM_013271	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
chr19.47777685.+	chr19	47777685	47777686	+	0	NA	promoter-TSS (NM_178511)	promoter-TSS (NM_178511)	26	NR_037675	255783	Hs.128690	NM_178511	ENSG00000257704	PRR24	-	proline rich 24	protein-coding
chr21.35774148.+	chr21	35774148	35774149	+	0	NA	Intergenic	AluSc8|SINE|Alu	26399	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr8.60674605.-	chr8	60674605	60674606	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519349	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr8.42722582.+	chr8	42722582	42722583	+	0	NA	"intron (NM_001160224, intron 4 of 5)"	AluSp|SINE|Alu	-24108	NM_199003	55145	Hs.7432	NM_018105	ENSG00000131931	THAP1	DYT6	"THAP domain containing, apoptosis associated protein 1"	protein-coding
chr17.79611153.-	chr17	79611153	79611154	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1804	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr9.35728491.-	chr9	35728491	35728492	-	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	3826	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chrX.87063931.-	chrX	87063931	87063932	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-291216	NM_057162	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr20.43378731.+	chr20	43378731	43378732	+	0	NA	"intron (NM_022358, intron 1 of 1)"	CpG	4243	NM_022358	60598	Hs.528664	NM_022358		KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	"potassium channel, subfamily K, member 15"	protein-coding
chr17.8534808.+	chr17	8534808	8534809	+	0	NA	promoter-TSS (NM_005964)	promoter-TSS (NM_005964)	-729	NM_001256012	4628	Hs.16355	NM_001256012	ENSG00000133026	MYH10	NMMHC-IIB|NMMHCB	"myosin, heavy chain 10, non-muscle"	protein-coding
chr20.62108047.+	chr20	62108047	62108048	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4054	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr16.432008.-	chr16	432008	432009	-	0	NA	promoter-TSS (NM_021259)	promoter-TSS (NM_021259)	58	NM_021259	58986	Hs.288940	NM_021259	ENSG00000129925	TMEM8A	M83|TMEM6|TMEM8	transmembrane protein 8A	protein-coding
chr7.129113698.+	chr7	129113698	129113699	+	0	NA	"intron (NM_020704, intron 18 of 20)"	AluSc8|SINE|Alu	-28622	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine-rich protein 1	protein-coding
chr1.567423.+	chr1	567423	567424	+	0	NA	Intergenic	Intergenic	54611	NM_001005224	26683	Hs.722724	NM_001005224	ENSG00000230178	OR4F3	-	"olfactory receptor, family 4, subfamily F, member 3"	protein-coding
chr8.101733346.+	chr8	101733346	101733347	+	0	NA	"intron (NM_002568, intron 1 of 14)"	CpG	969	NM_002568	26986	Hs.387804	NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	"poly(A) binding protein, cytoplasmic 1"	protein-coding
chr1.41736591.-	chr1	41736591	41736592	-	0	NA	Intergenic	AluY|SINE|Alu	28776	NM_001172219	22955	Hs.571874	NM_001031694	ENSG00000010803	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
chr4.27215135.-	chr4	27215135	27215136	-	0	NA	Intergenic	AluY|SINE|Alu	-352822	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr11.71702976.+	chr11	71702976	71702977	+	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	-6982	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr13.71053613.+	chr13	71053613	71053614	+	0	NA	Intergenic	AluSc|SINE|Alu	-370988	NM_020866	57626	Hs.508201	NM_020866	ENSG00000150361	KLHL1	MRP2	kelch-like family member 1	protein-coding
chr19.11463930.+	chr19	11463930	11463931	+	0	NA	"intron (NM_001080503, intron 7 of 10)"	AluSc8|SINE|Alu	-2132	NM_001170635	64748	Hs.6846	NM_001170635	ENSG00000105520	LPPR2	PRG4	lipid phosphate phosphatase-related protein type 2	protein-coding
chr19.4186720.-	chr19	4186720	4186721	-	0	NA	"intron (NM_133475, intron 2 of 21)"	"intron (NM_133475, intron 2 of 21)"	-3369	NM_133475	170961	Hs.197872	NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
chr8.99627104.-	chr8	99627104	99627105	-	0	NA	"intron (NM_001256313, intron 4 of 8)"	L1PA2|LINE|L1	-187854	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr5.92346212.+	chr5	92346212	92346213	+	0	NA	Intergenic	AluSq2|SINE|Alu	560287	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr9.127626615.+	chr9	127626615	127626616	+	0	NA	Intergenic	AluSx|SINE|Alu	-2375	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chrX.53111672.-	chrX	53111672	53111673	-	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	-130	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.240187910.+	chr2	240187910	240187911	+	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	-39247	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr15.41539492.-	chr15	41539492	41539493	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16055	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr19.2307938.-	chr19	2307938	2307939	-	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	-218	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr5.21528303.-	chr5	21528303	21528304	-	0	NA	"intron (NR_027026, intron 4 of 4)"	AluY|SINE|Alu	-68714	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr17.38400058.+	chr17	38400058	38400059	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24484	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr18.60740375.+	chr18	60740375	60740376	+	0	NA	Intergenic	AluYb8|SINE|Alu	246238	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr18.34669429.-	chr18	34669429	34669430	-	0	NA	"intron (NM_020776, intron 7 of 9)"	AluSx|SINE|Alu	260250	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr2.32250710.+	chr2	32250710	32250711	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14134	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr7.64349798.+	chr7	64349798	64349799	+	0	NA	Intergenic	CpG	-13822	NR_003099	10793	Hs.520889	NM_021148		ZNF273	HZF9	zinc finger protein 273	protein-coding
chr22.18131983.-	chr22	18131983	18131984	-	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	6445	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr15.91433035.+	chr15	91433035	91433036	+	0	NA	"intron (NM_001143785, intron 6 of 16)"	"intron (NM_001143785, intron 6 of 16)"	4759	NM_001143783	2242	Hs.7636	NM_001143783	ENSG00000182511	FES	FPS	feline sarcoma oncogene	protein-coding
chr16.87446540.-	chr16	87446540	87446541	-	0	NA	"exon (NM_015144, exon 12 of 13)"	"exon (NM_015144, exon 12 of 13)"	-20739	NM_022818	81631	Hs.356061	NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule-associated protein 1 light chain 3 beta	protein-coding
chr17.65843556.-	chr17	65843556	65843557	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21776	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr1.241050662.-	chr1	241050662	241050663	-	0	NA	"intron (NM_002924, intron 6 of 17)"	AluY|SINE|Alu	244910	NR_036069	100422856		NR_036069	ENSG00000265831	MIR3123	-	microRNA 3123	miscRNA
chr22.50871783.-	chr22	50871783	50871784	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41681	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr19.49964891.+	chr19	49964891	49964892	+	0	NA	"exon (NM_153329, exon 6 of 17)"	"exon (NM_153329, exon 6 of 17)"	8418	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr17.81153660.-	chr17	81153660	81153661	-	0	NA	Intergenic	Intergenic	21006	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
chr22.41715348.-	chr22	41715348	41715349	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17841	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr15.66993590.-	chr15	66993590	66993591	-	0	NA	Intergenic	CpG	1084	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr2.10916514.-	chr2	10916514	10916515	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36446	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr1.183670796.+	chr1	183670796	183670797	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48348	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr5.1494498.+	chr5	1494498	1494499	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29578	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr17.59482735.+	chr17	59482735	59482736	+	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	5478	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr6.64267972.+	chr6	64267972	64267973	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13948	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chrM.866.+	chrM	866	867	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr11.66512928.+	chr11	66512928	66512929	+	0	NA	"intron (NR_048553, intron 1 of 14)"	"intron (NR_048553, intron 1 of 14)"	721	NM_024650	79703	Hs.292088	NM_024650	ENSG00000173715	C11orf80	-	chromosome 11 open reading frame 80	protein-coding
chr22.21022159.-	chr22	21022159	21022160	-	0	NA	Intergenic	CpG	21684	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr12.125418018.+	chr12	125418018	125418019	+	0	NA	Intergenic	AluY|SINE|Alu	17925	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	-	microRNA 5188	miscRNA
chr17.4453821.+	chr17	4453821	4453822	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4860	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr5.149591753.-	chr5	149591753	149591754	-	0	NA	Intergenic	Intergenic	-22233	NM_014228	6534	Hs.241597	NM_014228	ENSG00000011083	SLC6A7	PROT	"solute carrier family 6 (neurotransmitter transporter, L-proline), member 7"	protein-coding
chr6.35310549.-	chr6	35310549	35310550	-	0	NA	"intron (NM_001171818, intron 1 of 8)"	CpG	-214	NM_177435	5467	Hs.696032	NM_001171818	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator-activated receptor delta	protein-coding
chr7.5570086.-	chr7	5570086	5570087	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-146	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr7.155246313.-	chr7	155246313	155246314	-	0	NA	Intergenic	Intergenic	4511	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr16.2033691.+	chr16	2033691	2033692	+	0	NA	promoter-TSS (NM_005262)	promoter-TSS (NM_005262)	-459	NM_005262	2671	Hs.744156	NM_005262	ENSG00000127554	GFER	ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS	"growth factor, augmenter of liver regeneration"	protein-coding
chr17.78978011.-	chr17	78978011	78978012	-	0	NA	Intergenic	CpG	-12370	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr2.234157325.-	chr2	234157325	234157326	-	0	NA	Intergenic	AluSx1|SINE|Alu	2892	NM_001190266	55054	Hs.529322	NM_001190266	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
chr2.32250863.-	chr2	32250863	32250864	-	0	NA	"intron (NM_032574, intron 4 of 4)"	"intron (NM_032574, intron 4 of 4)"	-13981	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr9.139734069.+	chr9	139734069	139734070	+	0	NA	"intron (NM_001173988, intron 12 of 14)"	"intron (NM_001173988, intron 12 of 14)"	-4798	NM_001080482	389813	Hs.495485	NM_001080482	ENSG00000232434	C9orf172	-	chromosome 9 open reading frame 172	protein-coding
chr3.139481323.-	chr3	139481323	139481324	-	0	NA	Intergenic	Intergenic	84438	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr9.10974561.-	chr9	10974561	10974562	-	0	NA	Intergenic	L1PBa|LINE|L1	361838	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.64493633.-	chr7	64493633	64493634	-	0	NA	Intergenic	SVA_C|Other|Other	5099	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr16.88000392.+	chr16	88000392	88000393	+	0	NA	"intron (NM_001173542, intron 1 of 12)"	"intron (NM_001173542, intron 1 of 12)"	-3232	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr7.66479987.-	chr7	66479987	66479988	-	0	NA	"intron (NM_018264, intron 5 of 15)"	"intron (NM_018264, intron 5 of 15)"	-18195	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr10.120946057.-	chr10	120946057	120946058	-	0	NA	Intergenic	AluJb|SINE|Alu	7712	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr17.40484833.+	chr17	40484833	40484834	+	0	NA	"intron (NM_003150, intron 10 of 23)"	AluSx|SINE|Alu	45268	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chrX.123125606.-	chrX	123125606	123125607	-	0	NA	"intron (NM_006603, intron 1 of 32)"	AluSp|SINE|Alu	-30050	NM_006603	10735	Hs.624663	NM_001042749	ENSG00000101972	STAG2	SA-2|SA2|SCC3B|bA517O1.1	stromal antigen 2	protein-coding
chr8.609250.-	chr8	609250	609251	-	0	NA	Intergenic	Intergenic	-71976	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr15.101457919.+	chr15	101457919	101457920	+	0	NA	Intergenic	Intergenic	-1541	NM_024652	79705	Hs.407918	NM_024652	ENSG00000154237	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
chr5.57859591.+	chr5	57859591	57859592	+	0	NA	Intergenic	SVA_A|Other|Other	-19348	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr17.1532199.-	chr17	1532199	1532200	-	0	NA	promoter-TSS (NM_152346)	promoter-TSS (NM_152346)	69	NM_152346	124935	Hs.160550	NM_152346	ENSG00000167703	SLC43A2	LAT4	"solute carrier family 43, member 2"	protein-coding
chr22.22006416.+	chr22	22006416	22006417	+	0	NA	promoter-TSS (NR_030622)	promoter-TSS (NR_030622)	-854	NR_030622	100126318		NR_030622	ENSG00000212102	MIR301B	MIRN301B	microRNA 301b	miscRNA
chr11.31555120.-	chr11	31555120	31555121	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluYk4|SINE|Alu	-23823	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr8.112843678.-	chr8	112843678	112843679	-	0	NA	Intergenic	AluY|SINE|Alu	812044	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	miscRNA
chrX.56406811.+	chrX	56406811	56406812	+	0	NA	Intergenic	SVA_C|Other|Other	147941	NM_001159296	11279	Hs.646614	NM_001159296	ENSG00000102349	KLF8	BKLF3|ZNF741	Kruppel-like factor 8	protein-coding
chr17.77198161.+	chr17	77198161	77198162	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	127142	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr20.5213471.-	chr20	5213471	5213472	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81544	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr12.122112241.-	chr12	122112241	122112242	-	0	NA	Intergenic	AluY|SINE|Alu	4681	NM_173855	283385	Hs.434154	NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
chr13.113443607.-	chr13	113443607	113443608	-	0	NA	"intron (NM_032189, intron 2 of 28)"	"intron (NM_032189, intron 2 of 28)"	-98964	NM_032189	23250	Hs.29189	NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS	"ATPase, class VI, type 11A"	protein-coding
chr5.18111549.+	chr5	18111549	18111550	+	0	NA	Intergenic	AluY|SINE|Alu	-724130	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr12.57177811.+	chr12	57177811	57177812	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20703	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr11.1853634.+	chr11	1853634	1853635	+	0	NA	Intergenic	Intergenic	-2040	NM_138567	90019	Hs.161031	NM_138567	ENSG00000149043	SYT8	-	synaptotagmin VIII	protein-coding
chr9.139028955.-	chr9	139028955	139028956	-	0	NA	Intergenic	MIRb|SINE|MIR	18224	NM_152833	90120	Hs.287411	NM_001256526	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
chr17.48195598.-	chr17	48195598	48195599	-	0	NA	"exon (NM_174920, exon 3 of 11)"	"exon (NM_174920, exon 3 of 11)"	-11648	NM_174920	201191	Hs.567769	NM_001257359	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
chr17.57884703.+	chr17	57884703	57884704	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33924	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr1.121484319.+	chr1	121484319	121484320	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	223409	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr7.519540.-	chr7	519540	519541	-	0	NA	Intergenic	Intergenic	-39941	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr7.100963604.-	chr7	100963604	100963605	-	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	-1489	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr16.632194.-	chr16	632194	632195	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7163	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr2.905552.-	chr2	905552	905553	-	0	NA	Intergenic	Intergenic	41002	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr5.106907915.+	chr5	106907915	106907916	+	0	NA	"intron (NM_001962, intron 1 of 4)"	"intron (NM_001962, intron 1 of 4)"	98681	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
chr2.101924986.-	chr2	101924986	101924987	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-192	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr16.12163816.+	chr16	12163816	12163817	+	0	NA	"intron (NM_032167, intron 10 of 20)"	AluYc|SINE|Alu	93214	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr13.113607823.+	chr13	113607823	113607824	+	0	NA	Intergenic	Intergenic	15129	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	miscRNA
chr5.28928041.+	chr5	28928041	28928042	+	0	NA	TTS (NR_033961)	TTS (NR_033961)	1064	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr15.91370801.-	chr15	91370801	91370802	-	0	NA	Intergenic	Intergenic	41084	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr3.102973969.+	chr3	102973969	102973970	+	0	NA	Intergenic	SVA_D|Other|Other	820110	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr20.48080614.+	chr20	48080614	48080615	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18567	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr2.86948188.-	chr2	86948188	86948189	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	-57	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr17.37760359.+	chr17	37760359	37760360	+	0	NA	"3' UTR (NM_006160, exon 2 of 2)"	"3' UTR (NM_006160, exon 2 of 2)"	3816	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr5.172159005.-	chr5	172159005	172159006	-	0	NA	Intergenic	Intergenic	-39198	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
chr1.110881073.-	chr1	110881073	110881074	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-720	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr11.1266598.-	chr11	1266598	1266599	-	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	-22303	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr17.53021550.+	chr17	53021550	53021551	+	0	NA	"intron (NM_005486, intron 11 of 15)"	AluSz6|SINE|Alu	24514	NM_001162861	1353	Hs.591171	NM_001162861	ENSG00000166260	COX11	COX11P	cytochrome c oxidase assembly homolog 11 (yeast)	protein-coding
chr7.1200515.+	chr7	1200515	1200516	+	0	NA	promoter-TSS (NM_182491)	promoter-TSS (NM_182491)	-660	NM_182491	90637	Hs.648111	NM_182491	ENSG00000178381	ZFAND2A	AIRAP	"zinc finger, AN1-type domain 2A"	protein-coding
chr5.178157714.-	chr5	178157714	178157715	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	11	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr5.25535464.+	chr5	25535464	25535465	+	0	NA	Intergenic	AluY|SINE|Alu	-694772	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr22.41521459.-	chr22	41521459	41521460	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32845	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr6.168397435.-	chr6	168397435	168397436	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	19816	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr19.16136972.-	chr19	16136972	16136973	-	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	7551	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr19.578648.+	chr19	578648	578649	+	0	NA	"intron (NM_001728, intron 2 of 8)"	"intron (NM_001728, intron 2 of 8)"	6194	NM_198589	682	Hs.501293	NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|M6|OK|TCSF	basigin (Ok blood group)	protein-coding
chr11.46411647.-	chr11	46411647	46411648	-	0	NA	Intergenic	CpG	3540	NM_000741	1132	Hs.248100	NM_000741	ENSG00000180720	CHRM4	HM4|M4R	"cholinergic receptor, muscarinic 4"	protein-coding
chr3.51033856.+	chr3	51033856	51033857	+	0	NA	"intron (NM_004947, intron 5 of 52)"	AluY|SINE|Alu	321184	NM_004947	1795	Hs.476284	NM_004947	ENSG00000088538	DOCK3	MOCA|PBP	dedicator of cytokinesis 3	protein-coding
chr11.72160499.+	chr11	72160499	72160500	+	0	NA	Intergenic	AluY|SINE|Alu	-14775	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr12.106606568.+	chr12	106606568	106606569	+	0	NA	Intergenic	L1PA7|LINE|L1	35145	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr14.44126230.-	chr14	44126230	44126231	-	0	NA	Intergenic	AluSc|SINE|Alu	-850269	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr22.22259637.-	chr22	22259637	22259638	-	0	NA	Intergenic	AluSq2|SINE|Alu	37667	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr19.4124235.+	chr19	4124235	4124236	+	0	NA	promoter-TSS (NM_030662)	promoter-TSS (NM_030662)	-109	NM_030662	5605	Hs.465627	NM_030662	ENSG00000126934	MAP2K2	MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
chr3.183034726.+	chr3	183034726	183034727	+	0	NA	"intron (NM_015078, intron 7 of 29)"	AluSx1|SINE|Alu	63694	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr1.197754605.-	chr1	197754605	197754606	-	0	NA	Intergenic	AluY|SINE|Alu	9982	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr19.47627938.+	chr19	47627938	47627939	+	0	NA	Intergenic	AluY|SINE|Alu	-6142	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr2.152760027.+	chr2	152760027	152760028	+	0	NA	"intron (NM_001005746, intron 2 of 13)"	AluSz6|SINE|Alu	70458	NM_001005747	785	Hs.120725	NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	"calcium channel, voltage-dependent, beta 4 subunit"	protein-coding
chr7.3169657.-	chr7	3169657	3169658	-	0	NA	Intergenic	AluSz6|SINE|Alu	86148	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr20.60981312.+	chr20	60981312	60981313	+	0	NA	"intron (NM_031215, intron 1 of 9)"	"intron (NM_031215, intron 1 of 9)"	1027	NM_031215	81928	Hs.301040	XM_003960792	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
chr12.67941945.-	chr12	67941945	67941946	-	0	NA	Intergenic	AluY|SINE|Alu	100567	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr3.22099210.-	chr3	22099210	22099211	-	0	NA	Intergenic	AluSx|SINE|Alu	306394	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr19.23474369.-	chr19	23474369	23474370	-	0	NA	Intergenic	AluSx|SINE|Alu	41197	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr13.81676524.-	chr13	81676524	81676525	-	0	NA	Intergenic	SVA_D|Other|Other	761438	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr17.28267923.-	chr17	28267923	28267924	-	0	NA	promoter-TSS (NR_026738)	promoter-TSS (NR_026738)	700	NM_198529	374786	Hs.662411	NM_001033562	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
chr17.79022755.+	chr17	79022755	79022756	+	0	NA	"intron (NM_017451, intron 1 of 14)"	"intron (NM_017451, intron 1 of 14)"	13808	NM_006340	10458	Hs.128316	NM_001144888	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1-associated protein 2	protein-coding
chr3.38106457.-	chr3	38106457	38106458	-	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	-25761	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr20.58244279.+	chr20	58244279	58244280	+	0	NA	"intron (NM_080672, intron 1 of 12)"	"intron (NM_080672, intron 1 of 12)"	-7437	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr7.532164.+	chr7	532164	532165	+	0	NA	Intergenic	Intergenic	27317	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr16.58288611.+	chr16	58288611	58288612	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4771	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr2.109985551.+	chr2	109985551	109985552	+	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	-55470	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr6.157342523.+	chr6	157342523	157342524	+	0	NA	"intron (NM_020732, intron 5 of 19)"	CpG	-241658	NR_039676	100616154		NR_039676	ENSG00000266623	MIR4466	-	microRNA 4466	miscRNA
chr7.53587099.-	chr7	53587099	53587100	-	0	NA	Intergenic	AluY|SINE|Alu	-292525	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr19.58125561.+	chr19	58125561	58125562	+	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	-269	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr10.99397985.-	chr10	99397985	99397986	-	0	NA	Intergenic	AluSq|SINE|Alu	2458	NM_018425	55361	Hs.25300	NM_018425	ENSG00000155252	PI4K2A	PI4KII|PIK42A|RP11-548K23.6	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
chr3.95669596.+	chr3	95669596	95669597	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267559	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr6.46742407.+	chr6	46742407	46742408	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18687	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr16.6394214.-	chr16	6394214	6394215	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluSq10|SINE|Alu	-325082	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr14.105560497.+	chr14	105560497	105560498	+	0	NA	Intergenic	L2c|LINE|L2	-28743	NM_013345	29933	Hs.532504	NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
chrX.86721025.+	chrX	86721025	86721026	+	0	NA	Intergenic	SVA_C|Other|Other	-51690	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr11.126081368.+	chr11	126081368	126081369	+	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	219	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr11.3224472.+	chr11	3224472	3224473	+	0	NA	Intergenic	Intergenic	-15090	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr3.182599174.+	chr3	182599174	182599175	+	0	NA	"intron (NM_014616, intron 21 of 29)"	AluSx|SINE|Alu	87883	NM_014616	23200	Hs.478429	NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	"ATPase, class VI, type 11B"	protein-coding
chr9.105365763.-	chr9	105365763	105365764	-	0	NA	Intergenic	SVA_B|Other|Other	391830	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr17.3847131.-	chr17	3847131	3847132	-	0	NA	"intron (NM_174955, intron 10 of 21)"	"intron (NM_174955, intron 10 of 21)"	-20627	NM_174957	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	"ATPase, Ca++ transporting, ubiquitous"	protein-coding
chr11.66887638.-	chr11	66887638	66887639	-	0	NA	"intron (NM_012308, intron 1 of 20)"	"intron (NM_012308, intron 1 of 20)"	-898	NR_027473	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr2.224599734.-	chr2	224599734	224599735	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102585	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr3.195498022.-	chr3	195498022	195498023	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40822	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr18.10581566.+	chr18	10581566	10581567	+	0	NA	Intergenic	AluSq2|SINE|Alu	55693	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr5.170687220.-	chr5	170687220	170687221	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49068	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr11.65597588.+	chr11	65597588	65597589	+	0	NA	Intergenic	AluSx|SINE|Alu	-3822	NM_152760	254122	Hs.591950	NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
chr2.20424075.+	chr2	20424075	20424076	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	852	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr16.78269435.+	chr16	78269435	78269436	+	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	136108	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr19.267128.+	chr19	267128	267129	+	0	NA	Intergenic	CpG	24041	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr12.53373519.-	chr12	53373519	53373520	-	0	NA	Intergenic	AluSx1|SINE|Alu	26543	NM_001417	1975	Hs.702041	NM_018507	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
chr15.65579398.-	chr15	65579398	65579399	-	0	NA	promoter-TSS (NM_017851)	promoter-TSS (NM_017851)	380	NM_017851	54956	Hs.30634	NM_017851	ENSG00000138617	PARP16	ARTD15|C15orf30|pART15	"poly (ADP-ribose) polymerase family, member 16"	protein-coding
chr11.4258897.+	chr11	4258897	4258898	+	0	NA	Intergenic	SVA_B|Other|Other	50515	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr6.164726221.-	chr6	164726221	164726222	-	0	NA	Intergenic	AluSq2|SINE|Alu	-890546	NM_006775	9444	Hs.510324	NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	"QKI, KH domain containing, RNA binding"	protein-coding
chr9.127626604.-	chr9	127626604	127626605	-	0	NA	Intergenic	AluSx|SINE|Alu	2364	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr12.2904540.+	chr12	2904540	2904541	+	0	NA	"intron (NM_002014, intron 1 of 9)"	CpG	432	NM_002014	2288	Hs.713721	NM_002014		FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	"FK506 binding protein 4, 59kDa"	protein-coding
chrX.39680331.-	chrX	39680331	39680332	-	0	NA	Intergenic	CpG	-276388	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr17.81047242.-	chr17	81047242	81047243	-	0	NA	"intron (NM_001004431, intron 2 of 3)"	"intron (NM_001004431, intron 2 of 3)"	-9675	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr3.15147888.-	chr3	15147888	15147889	-	0	NA	Intergenic	AluSz|SINE|Alu	7233	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr7.6548822.+	chr7	6548822	6548823	+	0	NA	"exon (NM_001145118, exon 12 of 22)"	"exon (NM_001145118, exon 12 of 22)"	-24973	NM_006854	11014	Hs.654552	NM_001100603	ENSG00000136240	KDELR2	ELP-1|ERD2.2	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding
chr1.197418616.+	chr1	197418616	197418617	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181282	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr19.18084702.-	chr19	18084702	18084703	-	0	NA	"exon (NM_002248, exon 3 of 11)"	"exon (NM_002248, exon 3 of 11)"	-22591	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr11.71702975.+	chr11	71702975	71702976	+	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	-6983	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr11.70371233.-	chr11	70371233	70371234	-	0	NA	"intron (NM_012309, intron 14 of 22)"	ERVL-E-int|LTR|ERVL	105966	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	miscRNA
chr13.113951732.+	chr13	113951732	113951733	+	0	NA	"5' UTR (NM_005561, exon 1 of 9)"	"5' UTR (NM_005561, exon 1 of 9)"	263	NM_005561	3916	Hs.494419	NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal-associated membrane protein 1	protein-coding
chr14.23107130.-	chr14	23107130	23107131	-	0	NA	Intergenic	SVA_E|Other|Other	-39983	NM_022060	63874	Hs.445665	NM_022060	ENSG00000100439	ABHD4	ABH4	abhydrolase domain containing 4	protein-coding
chr22.46929359.+	chr22	46929359	46929360	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3708	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr14.23517085.+	chr14	23517085	23517086	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5709	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr21.47813438.-	chr21	47813438	47813439	-	0	NA	"intron (NM_006031, intron 21 of 46)"	CpG	65424	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr19.7123233.-	chr19	7123233	7123234	-	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	-53762	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr3.95669680.+	chr3	95669680	95669681	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267643	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr9.89561563.-	chr9	89561563	89561564	-	0	NA	"exon (NM_002048, exon 1 of 1)"	"exon (NM_002048, exon 1 of 1)"	-541	NM_002048	2619	Hs.65029	NM_002048	ENSG00000180447	GAS1	-	growth arrest-specific 1	protein-coding
chr12.132353160.+	chr12	132353160	132353161	+	0	NA	Intergenic	Intergenic	-26119	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr1.9242778.+	chr1	9242778	9242779	+	0	NA	Intergenic	CpG	-30942	NR_029610	407040	Hs.730325	NR_029610	ENSG00000207865	MIR34A	MIRN34A|miRNA34A|mir-34	microRNA 34a	miscRNA
chr5.170687169.-	chr5	170687169	170687170	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49119	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr17.35266230.+	chr17	35266230	35266231	+	0	NA	Intergenic	AluSx3|SINE|Alu	-28542	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr15.92290003.+	chr15	92290003	92290004	+	0	NA	Intergenic	AluY|SINE|Alu	-106935	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr21.11107103.+	chr21	11107103	11107104	+	0	NA	Intergenic	CpG	-8166	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr19.48103775.+	chr19	48103775	48103776	+	0	NA	Intergenic	CpG	-7678	NM_015711	29998	Hs.97244	NM_015711	ENSG00000063169	GLTSCR1	-	glioma tumor suppressor candidate region gene 1	protein-coding
chr12.122181560.-	chr12	122181560	122181561	-	0	NA	"exon (NM_001080825, exon 2 of 12)"	"exon (NM_001080825, exon 2 of 12)"	-30902	NM_001080825	144404	Hs.644504	NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
chr1.7711005.+	chr1	7711005	7711006	+	0	NA	"intron (NM_015215, intron 7 of 22)"	"intron (NM_015215, intron 7 of 22)"	-120324	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr5.2751865.-	chr5	2751865	2751866	-	0	NA	promoter-TSS (NM_178569)	promoter-TSS (NM_178569)	96	NM_001134222	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr20.33734904.+	chr20	33734904	33734905	+	0	NA	"non-coding (NR_026728, exon 1 of 10)"	"non-coding (NR_026728, exon 1 of 10)"	257	NR_026728	55741	Hs.720177	NM_001145025	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	"ER degradation enhancer, mannosidase alpha-like 2"	protein-coding
chr10.44870338.+	chr10	44870338	44870339	+	0	NA	TTS (NM_001033886)	TTS (NM_001033886)	10207	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr19.46786023.+	chr19	46786023	46786024	+	0	NA	"intron (NR_046936, intron 3 of 3)"	AluSx1|SINE|Alu	-14280	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	"hypoxia inducible factor 3, alpha subunit"	protein-coding
chr5.14460494.+	chr5	14460494	14460495	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121397	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr10.24081579.+	chr10	24081579	24081580	+	0	NA	"intron (NM_001098500, intron 1 of 18)"	AluY|SINE|Alu	97904	NM_001098500	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr1.227982866.+	chr1	227982866	227982867	+	0	NA	Intergenic	Intergenic	-20552	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr15.89219694.-	chr15	89219694	89219695	-	0	NA	Intergenic	AluSx|SINE|Alu	-37655	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
chr3.42630496.-	chr3	42630496	42630497	-	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	1802	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr5.1144384.+	chr5	1144384	1144385	+	0	NA	Intergenic	Intergenic	-32212	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr6.159515329.+	chr6	159515329	159515330	+	0	NA	Intergenic	Intergenic	-49145	NM_054114	117289	Hs.529984	NM_054114	ENSG00000164691	TAGAP	ARHGAP47|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
chr8.26541493.-	chr8	26541493	26541494	-	0	NA	Intergenic	SVA_A|Other|Other	-105572	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr17.26336732.+	chr17	26336732	26336733	+	0	NA	Intergenic	AluSz|SINE|Alu	-32956	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr11.18743431.-	chr11	18743431	18743432	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4346	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr21.43198318.+	chr21	43198318	43198319	+	0	NA	Intergenic	Intergenic	-11069	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr7.4872066.+	chr7	4872066	4872067	+	0	NA	"intron (NM_018059, intron 4 of 14)"	"intron (NM_018059, intron 4 of 14)"	29559	NM_020144	56903	Hs.487409	NM_020144	ENSG00000218823	PAPOLB	PAPT|TPAP	poly(A) polymerase beta (testis specific)	protein-coding
chr12.52281486.+	chr12	52281486	52281487	+	0	NA	promoter-TSS (NM_001130015)	promoter-TSS (NM_001130015)	-307	NM_001130015	341405	Hs.433492	NM_001130015	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
chr11.66627643.+	chr11	66627643	66627644	+	0	NA	"exon (NM_024036, exon 2 of 2)"	"exon (NM_024036, exon 2 of 2)"	2767	NM_024036	78999	Hs.714189	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
chr9.34070273.+	chr9	34070273	34070274	+	0	NA	Intergenic	AluSz|SINE|Alu	-21326	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr16.209971.-	chr16	209971	209972	-	0	NA	Intergenic	Intergenic	6002	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr6.4780655.+	chr6	4780655	4780656	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3975	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr2.224599657.-	chr2	224599657	224599658	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102662	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr17.4697350.+	chr17	4697350	4697351	+	0	NA	Intergenic	AluY|SINE|Alu	-2089	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr19.12606219.-	chr19	12606219	12606220	-	0	NA	Intergenic	CpG	10587	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr1.151573448.-	chr1	151573448	151573449	-	0	NA	Intergenic	SVA_E|Other|Other	11214	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr9.127900826.+	chr9	127900826	127900827	+	0	NA	"intron (NM_173690, intron 2 of 18)"	AluY|SINE|Alu	5012	NM_173690	286205	Hs.59504	NM_001144877		SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
chr12.129892258.-	chr12	129892258	129892259	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-495954	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr14.101693640.-	chr14	101693640	101693641	-	0	NA	Intergenic	Intergenic	-157392	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr2.203100532.-	chr2	203100532	203100533	-	0	NA	"intron (NM_003352, intron 1 of 4)"	"intron (NM_003352, intron 1 of 4)"	-2790	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr16.4761009.-	chr16	4761009	4761010	-	0	NA	"intron (NM_001242929, intron 4 of 14)"	AluSz|SINE|Alu	-17315	NM_001193452	84309	Hs.513315	NM_001193452	ENSG00000168101	NUDT16L1	SDOS	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding
chr18.73357740.-	chr18	73357740	73357741	-	0	NA	Intergenic	L2|LINE|L2	218151	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr19.2400846.+	chr19	2400846	2400847	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11062	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr21.11130087.-	chr21	11130087	11130088	-	0	NA	Intergenic	AluSz6|SINE|Alu	31150	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr17.3317565.-	chr17	3317565	3317566	-	0	NA	Intergenic	AluSc8|SINE|Alu	6297	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr8.48100905.-	chr8	48100905	48100906	-	0	NA	promoter-TSS (NR_037168)	promoter-TSS (NR_037168)	25	NR_037168	100287846	Hs.21550	NR_037168		LOC100287846	-	patched 1 pseudogene	pseudo
chr5.34930151.-	chr5	34930151	34930152	-	0	NA	"intron (NM_001012339, intron 1 of 11)"	CpG	-453	NM_001012339	134218	Hs.131887	NM_001012339	ENSG00000168724	DNAJC21	DNAJA5|GS3|JJJ1	"DnaJ (Hsp40) homolog, subfamily C, member 21"	protein-coding
chr19.45406771.-	chr19	45406771	45406772	-	0	NA	"3' UTR (NM_001128916, exon 10 of 10)"	"3' UTR (NM_001128916, exon 10 of 10)"	2268	NM_000041	348	Hs.654439	NM_000041	ENSG00000130203	APOE	AD2|LDLCQ5|LPG	apolipoprotein E	protein-coding
chr17.46069047.+	chr17	46069047	46069048	+	0	NA	Intergenic	Intergenic	20618	NM_176096	80279	Hs.20157	NM_176096	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114	CDK5 regulatory subunit associated protein 3	protein-coding
chr12.11653776.+	chr12	11653776	11653777	+	0	NA	Intergenic	Intergenic	-47188	NR_033890	338817	Hs.733066	NR_033890	ENSG00000247157	LOC338817	-	uncharacterized LOC338817	miscRNA
chr22.50939835.-	chr22	50939835	50939836	-	0	NA	Intergenic	AluY|SINE|Alu	-6300	NM_033200	91289	Hs.150540	NM_033200	ENSG00000100258	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
chr9.121872000.-	chr9	121872000	121872001	-	0	NA	Intergenic	AluYk4|SINE|Alu	-259739	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr8.57184586.-	chr8	57184586	57184587	-	0	NA	Intergenic	SVA_D|Other|Other	-48655	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr14.21493793.-	chr14	21493793	21493794	-	0	NA	promoter-TSS (NM_201540)	promoter-TSS (NM_201540)	-142	NM_201535	57447	Hs.525205	NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
chr21.43109601.-	chr21	43109601	43109602	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10139	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr6.33811443.+	chr6	33811443	33811444	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39650	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr19.49186343.-	chr19	49186343	49186344	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10079	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr7.130332823.-	chr7	130332823	130332824	-	0	NA	"intron (NM_012133, intron 5 of 12)"	AluSc8|SINE|Alu	-20775	NM_012133	26958	Hs.6421	NM_012133		COPG2	2-COP	"coatomer protein complex, subunit gamma 2"	protein-coding
chr9.14830617.+	chr9	14830617	14830618	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51086	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr20.45991146.+	chr20	45991146	45991147	+	0	NA	Intergenic	AluSz|SINE|Alu	-5672	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chrX.20694415.-	chrX	20694415	20694416	-	0	NA	Intergenic	AluY|SINE|Alu	409665	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr14.35334234.-	chr14	35334234	35334235	-	0	NA	"intron (NM_013448, intron 2 of 26)"	AluSc8|SINE|Alu	-10619	NM_182648	11177	Hs.509140	NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	"bromodomain adjacent to zinc finger domain, 1A"	protein-coding
chr8.7414140.+	chr8	7414140	7414141	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2486	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr12.124197388.-	chr12	124197388	124197389	-	0	NA	"intron (NM_012463, intron 1 of 19)"	CpG	-523	NM_012463	23545	Hs.25786	NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS	"ATPase, H+ transporting, lysosomal V0 subunit a2"	protein-coding
chr2.174830153.-	chr2	174830153	174830154	-	0	NA	"5' UTR (NM_003111, exon 1 of 7)"	"5' UTR (NM_003111, exon 1 of 7)"	-277	NM_001172712	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr8.26241073.-	chr8	26241073	26241074	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-550	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr16.181440.+	chr16	181440	181441	+	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	7257	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr3.50347788.-	chr3	50347788	50347789	-	0	NA	"intron (NM_153281, intron 1 of 5)"	AluY|SINE|Alu	-2024	NM_153281	3373	Hs.75619	NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|NAT6	hyaluronoglucosaminidase 1	protein-coding
chr19.5046642.+	chr19	5046642	5046643	+	0	NA	"intron (NM_015015, intron 5 of 22)"	"intron (NM_015015, intron 5 of 22)"	77518	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr12.33592699.+	chr12	33592699	33592700	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	55	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr5.170737070.-	chr5	170737070	170737071	-	0	NA	"intron (NM_021025, intron 1 of 2)"	CpG-21367	-782	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr3.15431254.-	chr3	15431254	15431255	-	0	NA	Intergenic	AluSp|SINE|Alu	-37788	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr1.46956720.-	chr1	46956720	46956721	-	0	NA	Intergenic	CpG	15948	NM_147192	127343	Hs.375623	NM_147192	ENSG00000197587	DMBX1	MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
chr22.18251500.-	chr22	18251500	18251501	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4475	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr10.133203416.+	chr10	133203416	133203417	+	0	NA	Intergenic	Intergenic	-93432	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr3.71746087.+	chr3	71746087	71746088	+	0	NA	"intron (NM_001134650, intron 4 of 7)"	AluY|SINE|Alu	28439	NM_001134651	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr19.1758069.+	chr19	1758069	1758070	+	0	NA	"intron (NM_001080488, intron 1 of 1)"	CpG	4407	NM_001080488	390874	Hs.654347	NM_001080488		ONECUT3	OC3	one cut homeobox 3	protein-coding
chr14.107247429.-	chr14	107247429	107247430	-	0	NA	Intergenic	HERV3-int|LTR|ERV1	-308974	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	miscRNA
chr3.107940845.+	chr3	107940845	107940846	+	0	NA	"intron (NM_018010, intron 1 of 10)"	"intron (NM_018010, intron 1 of 10)"	572	NM_018010	55081	Hs.412196	NM_018010	ENSG00000114446	IFT57	ESRRBL1|HIPPI|MHS4R2	intraflagellar transport 57 homolog (Chlamydomonas)	protein-coding
chr11.44361720.-	chr11	44361720	44361721	-	0	NA	Intergenic	AluJb|SINE|Alu	30004	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr9.34329769.+	chr9	34329769	34329770	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	265	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr19.39475275.+	chr19	39475275	39475276	+	0	NA	Intergenic	AluSz|SINE|Alu	-8895	NM_024907	115290	Hs.531770	NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
chr22.49547465.+	chr22	49547465	49547466	+	0	NA	Intergenic	Intergenic	284883	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr3.52030318.-	chr3	52030318	52030319	-	0	NA	promoter-TSS (NM_000992)	promoter-TSS (NM_000992)	360	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
chr17.1226120.-	chr17	1226120	1226121	-	0	NA	Intergenic	AluSx|SINE|Alu	-43163	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr16.58288667.-	chr16	58288667	58288668	-	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	-4827	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr20.43378740.-	chr20	43378740	43378741	-	0	NA	"intron (NM_022358, intron 1 of 1)"	CpG	-4252	NM_022358	60598	Hs.528664	NM_022358		KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	"potassium channel, subfamily K, member 15"	protein-coding
chr12.132116767.+	chr12	132116767	132116768	+	0	NA	Intergenic	L1ME1|LINE|L1	-78865	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr13.33775006.-	chr13	33775006	33775007	-	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	-5181	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr19.34394404.-	chr19	34394404	34394405	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106653	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr14.104557793.-	chr14	104557793	104557794	-	0	NA	"intron (NM_001080464, intron 1 of 15)"	"intron (NM_001080464, intron 1 of 15)"	-5770	NM_001080464	374569	Hs.146239	NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT	asparaginase homolog (S. cerevisiae)	protein-coding
chrX.47441873.-	chrX	47441873	47441874	-	0	NA	"5' UTR (NM_003254, exon 1 of 6)"	"5' UTR (NM_003254, exon 1 of 6)"	-183	NM_003254	7076	Hs.522632	NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP	TIMP metallopeptidase inhibitor 1	protein-coding
chr7.5570064.+	chr7	5570064	5570065	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	168	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr16.29422146.+	chr16	29422146	29422147	+	0	NA	Intergenic	AluSx|SINE|Alu	-38520	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chrX.53111677.+	chrX	53111677	53111678	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	135	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.79439105.-	chr12	79439105	79439106	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	328	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr17.78559379.+	chr17	78559379	78559380	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40754	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr12.110518129.-	chr12	110518129	110518130	-	0	NA	Intergenic	AluSx1|SINE|Alu	12629	NM_207435	400073	Hs.44817	NM_207435	ENSG00000174456	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
chr14.106023754.+	chr14	106023754	106023755	+	0	NA	Intergenic	AluSx1|SINE|Alu	30801	NM_025268	80757	Hs.157527	NM_025268	ENSG00000184986	TMEM121	hole	transmembrane protein 121	protein-coding
chr17.79427770.+	chr17	79427770	79427771	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9556	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr2.122878826.-	chr2	122878826	122878827	-	0	NA	Intergenic	AluY|SINE|Alu	-365705	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr17.78559325.-	chr17	78559325	78559326	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40700	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr12.8057280.-	chr12	8057280	8057281	-	0	NA	Intergenic	AluSp|SINE|Alu	-31612	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr2.85659696.-	chr2	85659696	85659697	-	0	NA	Intergenic	AluYf4|SINE|Alu	2222	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr17.4435123.-	chr17	4435123	4435124	-	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	-23558	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr12.131704369.+	chr12	131704369	131704370	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	54813	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chrX.15337009.-	chrX	15337009	15337010	-	0	NA	TTS (NM_002641)	TTS (NM_002641)	3263	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr2.229496742.-	chr2	229496742	229496743	-	0	NA	Intergenic	AluYc|SINE|Alu	450381	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr16.1845121.-	chr16	1845121	1845122	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	212	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr16.29272938.-	chr16	29272938	29272939	-	0	NA	Intergenic	Intergenic	40670	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr13.21363800.+	chr13	21363800	21363801	+	0	NA	"intron (NM_022459, intron 19 of 22)"	AluY|SINE|Alu	-15743	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
chr6.57322554.+	chr6	57322554	57322555	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140132	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr1.79749342.-	chr1	79749342	79749343	-	0	NA	Intergenic	AluSx|SINE|Alu	276847	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr12.120566831.+	chr12	120566831	120566832	+	0	NA	"intron (NM_006836, intron 57 of 57)"	AluY|SINE|Alu	-12188	NM_006861	11021	Hs.524788	NM_001167606	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	"RAB35, member RAS oncogene family"	protein-coding
chr13.50297727.+	chr13	50297727	50297728	+	0	NA	"intron (NM_002267, intron 7 of 16)"	L1MB8|LINE|L1	-32104	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr11.342867.-	chr11	342867	342868	-	0	NA	Intergenic	AluSz|SINE|Alu	21953	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr15.90617407.+	chr15	90617407	90617408	+	0	NA	"exon (NM_198526, exon 4 of 5)"	"exon (NM_198526, exon 4 of 5)"	28301	NM_002168	3418	Hs.596461	NM_002168		IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	"isocitrate dehydrogenase 2 (NADP+), mitochondrial"	protein-coding
chr2.202092573.+	chr2	202092573	202092574	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5593	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr5.128196987.-	chr5	128196987	128196988	-	0	NA	Intergenic	AluYk4|SINE|Alu	104223	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr1.181058729.+	chr1	181058729	181058730	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1091	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr9.134449916.+	chr9	134449916	134449917	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43254	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr2.111250634.-	chr2	111250634	111250635	-	0	NA	Intergenic	AluY|SINE|Alu	19982	NM_033514	96626	Hs.535619	NM_033514	ENSG00000256977	LIMS3	PINCH-3	LIM and senescent cell antigen-like domains 3	protein-coding
chr7.66480034.-	chr7	66480034	66480035	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18242	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr1.21995653.-	chr1	21995653	21995654	-	0	NA	"intron (NM_001145657, intron 1 of 26)"	CpG	-203	NM_002885	5909	Hs.148178	NM_001145657	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
chr17.27070046.+	chr17	27070046	27070047	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-977	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr1.2341617.-	chr1	2341617	2341618	-	0	NA	"intron (NM_002617, intron 2 of 5)"	"intron (NM_002617, intron 2 of 5)"	-2393	NM_002617	5192	Hs.732228	NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
chrX.53930563.+	chrX	53930563	53930564	+	0	NA	Intergenic	AluSq2|SINE|Alu	139064	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr1.212371363.-	chr1	212371363	212371364	-	0	NA	Intergenic	AluY|SINE|Alu	87516	NM_006243	5525	Hs.744012	NM_001199756	ENSG00000066027	PPP2R5A	B56A|PR61A	"protein phosphatase 2, regulatory subunit B', alpha"	protein-coding
chr5.40801258.-	chr5	40801258	40801259	-	0	NA	Intergenic	SVA_E|Other|Other	2961	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr19.41316695.-	chr19	41316695	41316696	-	0	NA	Intergenic	CpG	-11361	NM_053046	112398	Hs.730737	NM_053046	ENSG00000269858	EGLN2	EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl nine homolog 2 (C. elegans)	protein-coding
chr9.108320639.+	chr9	108320639	108320640	+	0	NA	"intron (NM_006731, intron 1 of 9)"	CpG	228	NM_001198963	2218	Hs.55777	NM_001079802	ENSG00000106692	FKTN	CMD1X|FCMD|LGMD2M|MDDGA4|MDDGB4|MDDGC4	fukutin	protein-coding
chr10.26961167.+	chr10	26961167	26961168	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25428	NM_014317	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1	"prenyl (decaprenyl) diphosphate synthase, subunit 1"	protein-coding
chr9.140513664.-	chr9	140513664	140513665	-	0	NA	promoter-TSS (NM_032937)	promoter-TSS (NM_032937)	-220	NM_024757	79813	Hs.495511	NM_001145527	ENSG00000181090	EHMT1	EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KMT1D|bA188C12.1	euchromatic histone-lysine N-methyltransferase 1	protein-coding
chr19.39032695.-	chr19	39032695	39032696	-	0	NA	"intron (NM_001042723, intron 83 of 104)"	AluJr|SINE|Alu	-75948	NM_007181	11184	Hs.95424	NM_001042600	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
chr19.21652225.+	chr19	21652225	21652226	+	0	NA	Intergenic	AluY|SINE|Alu	-14292	NR_037194	400680	Hs.710554	NR_037194	ENSG00000268658	LOC400680	-	uncharacterized LOC400680	miscRNA
chr2.128430608.+	chr2	128430608	128430609	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2156	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr6.168352148.+	chr6	168352148	168352149	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25471	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr19.21789912.+	chr19	21789912	21789913	+	0	NA	Intergenic	SVA_D|Other|Other	101475	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr17.78397726.-	chr17	78397726	78397727	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4508	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr12.111714740.+	chr12	111714740	111714741	+	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	92185	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr6.71104377.+	chr6	71104377	71104378	+	0	NA	Intergenic	MER48|LTR|ERV1	-18730	NM_020819	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr13.23713107.-	chr13	23713107	23713108	-	0	NA	Intergenic	AluY|SINE|Alu	41953	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr2.48811038.+	chr2	48811038	48811039	+	0	NA	"intron (NM_172311, intron 2 of 10)"	AluSg|SINE|Alu	3312	NM_001198594	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr2.61307053.-	chr2	61307053	61307054	-	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx1|SINE|Alu	-13690	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chrX.42939917.+	chrX	42939917	42939918	+	0	NA	Intergenic	AluSx|SINE|Alu	-302431	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr6.166722243.+	chr6	166722243	166722244	+	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	-372	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr9.140400795.-	chr9	140400795	140400796	-	0	NA	"intron (NM_001098537, intron 12 of 34)"	LTR42|LTR|ERVL	-44191	NM_152286	375775	Hs.294147	NM_001098537	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin-like phospholipase domain containing 7	protein-coding
chr16.49892643.+	chr16	49892643	49892644	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-813	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chrX.132930082.-	chrX	132930082	132930083	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189591	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr12.25404241.-	chr12	25404241	25404242	-	0	NA	promoter-TSS (NM_033360)	promoter-TSS (NM_033360)	387	NM_033360	3845	Hs.505033	NM_004985	ENSG00000133703	KRAS	C-K-RAS|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RASK2	v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	protein-coding
chr5.176075377.-	chr5	176075377	176075378	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-989	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr1.27394511.-	chr1	27394511	27394512	-	0	NA	Intergenic	AluY|SINE|Alu	55178	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr7.53587089.+	chr7	53587089	53587090	+	0	NA	Intergenic	AluY|SINE|Alu	292535	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr2.24272604.+	chr2	24272604	24272605	+	0	NA	promoter-TSS (NM_004116)	promoter-TSS (NM_004116)	20	NM_004116	2281	Hs.709461	NM_004116	ENSG00000119782	FKBP1B	FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase	"FK506 binding protein 1B, 12.6 kDa"	protein-coding
chr22.18293044.-	chr22	18293044	18293045	-	0	NA	"intron (NM_015241, intron 28 of 31)"	AluY|SINE|Alu	35613	NM_001244567	637	Hs.591054	NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
chr5.68358796.-	chr5	68358796	68358797	-	0	NA	Intergenic	SVA_D|Other|Other	30980	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr14.101693703.-	chr14	101693703	101693704	-	0	NA	Intergenic	Intergenic	-157455	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr3.109059735.+	chr3	109059735	109059736	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3316	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr6.105414618.-	chr6	105414618	105414619	-	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	-9695	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr5.86907879.-	chr5	86907879	86907880	-	0	NA	Intergenic	AluY|SINE|Alu	199029	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr11.119986314.-	chr11	119986314	119986315	-	0	NA	"intron (NM_012101, intron 7 of 8)"	"intron (NM_012101, intron 7 of 8)"	-22549	NM_012101	23650	Hs.504115	NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
chr16.89034201.+	chr16	89034201	89034202	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9303	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr1.145400417.-	chr1	145400417	145400418	-	0	NA	Intergenic	AluSq2|SINE|Alu	12774	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr11.113666038.+	chr11	113666038	113666039	+	0	NA	Intergenic	AluSx|SINE|Alu	15520	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr7.1798904.-	chr7	1798904	1798905	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50106	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr3.73395046.-	chr3	73395046	73395047	-	0	NA	Intergenic	AluY|SINE|Alu	-279026	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr20.34266415.+	chr20	34266415	34266416	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13537	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr6.2084901.+	chr6	2084901	2084902	+	0	NA	"intron (NM_001253846, intron 4 of 10)"	AluY|SINE|Alu	91324	NM_001253846	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr2.10405988.-	chr2	10405988	10405989	-	0	NA	Intergenic	Intergenic	37042	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr20.62108067.-	chr20	62108067	62108068	-	0	NA	Intergenic	AluSq2|SINE|Alu	4074	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr2.27588378.+	chr2	27588378	27588379	+	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	4541	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr4.183981832.-	chr4	183981832	183981833	-	0	NA	Intergenic	AluJb|SINE|Alu	-23014	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	"family with sequence similarity 92, member A3"	pseudo
chr16.87910793.-	chr16	87910793	87910794	-	0	NA	Intergenic	AluY|SINE|Alu	7693	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr7.38566130.+	chr7	38566130	38566131	+	0	NA	"intron (NM_139316, intron 2 of 19)"	AluSz6|SINE|Alu	105037	NM_139316	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
chr11.2270828.+	chr11	2270828	2270829	+	0	NA	Intergenic	Intergenic	21354	NM_005170	430	Hs.152475	NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute complex homolog 2 (Drosophila)	protein-coding
chr7.5396369.+	chr7	5396369	5396370	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66808	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chrX.15337016.-	chrX	15337016	15337017	-	0	NA	TTS (NM_002641)	TTS (NM_002641)	3270	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr9.128918432.+	chr9	128918432	128918433	+	0	NA	Intergenic	Intergenic	-170691	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr15.42300392.-	chr15	42300392	42300393	-	0	NA	"intron (NM_001206670, intron 2 of 19)"	"intron (NM_001206670, intron 2 of 19)"	35637	NM_139265	30844	Hs.143703	NM_139265	ENSG00000103966	EHD4	PAST4	EH-domain containing 4	protein-coding
chr9.10786989.-	chr9	10786989	10786990	-	0	NA	Intergenic	AluYc3|SINE|Alu	174266	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.38829433.+	chr2	38829433	38829434	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	CpG	745	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr5.1067296.-	chr5	1067296	1067297	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4207	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr14.104097560.+	chr14	104097560	104097561	+	0	NA	"intron (NM_182923, intron 1 of 14)"	AluY|SINE|Alu	2035	NM_005552	3831	Hs.657678	NM_001130107	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
chr2.242143575.-	chr2	242143575	242143576	-	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	-15651	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr9.93923737.-	chr9	93923737	93923738	-	0	NA	Intergenic	Intergenic	86323	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	miscRNA
chr2.204615939.-	chr2	204615939	204615940	-	0	NA	Intergenic	AluY|SINE|Alu	-44741	NM_001243077	940	Hs.443123	NM_001243077		CD28	Tp44	CD28 molecule	protein-coding
chr17.4183953.-	chr17	4183953	4183954	-	0	NA	"intron (NM_003342, intron 5 of 5)"	AluSx3|SINE|Alu	16679	NM_016376	51479	Hs.696087	NM_001257999	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
chr19.6945090.-	chr19	6945090	6945091	-	0	NA	Intergenic	AluY|SINE|Alu	-45767	NR_024075	326342	Hs.688043	NR_024075	ENSG00000268758	EMR4P	EMR4|FIRE|GPR127|PGR16	"egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene"	pseudo
chr10.122148826.+	chr10	122148826	122148827	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67640	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr9.138437759.-	chr9	138437759	138437760	-	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	226	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr1.227982928.+	chr1	227982928	227982929	+	0	NA	Intergenic	Intergenic	-20490	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr19.42760786.-	chr19	42760786	42760787	-	0	NA	Intergenic	MIRb|SINE|MIR	1477	NM_006494	2077	Hs.655969	NM_006494	ENSG00000105722	ERF	PE-2|PE2	Ets2 repressor factor	protein-coding
chr14.55349959.-	chr14	55349959	55349960	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5048	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr14.97183863.-	chr14	97183863	97183864	-	0	NA	Intergenic	AluY|SINE|Alu	79821	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr9.15428378.+	chr9	15428378	15428379	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5596	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr19.2492327.-	chr19	2492327	2492328	-	0	NA	Intergenic	AluSz|SINE|Alu	-16204	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr16.81156368.+	chr16	81156368	81156369	+	0	NA	"intron (NM_052892, intron 37 of 42)"	AluSq2|SINE|Alu	-26388	NM_004483	2653	Hs.546256	NM_004483	ENSG00000140905	GCSH	GCE|NKH	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
chr7.56143787.-	chr7	56143787	56143788	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11870	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr21.47838730.-	chr21	47838730	47838731	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40132	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chrX.12171159.+	chrX	12171159	12171160	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14574	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chr22.46522750.+	chr22	46522750	46522751	+	0	NA	Intergenic	Intergenic	13184	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr10.81146769.-	chr10	81146769	81146770	-	0	NA	"intron (NM_153367, intron 3 of 3)"	"intron (NM_153367, intron 3 of 3)"	-39549	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr7.5570093.-	chr7	5570093	5570094	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-139	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr11.915978.+	chr11	915978	915979	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-920	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr10.7626525.+	chr10	7626525	7626526	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35111	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr19.10380370.+	chr19	10380370	10380371	+	0	NA	Intergenic	CpG	-1147	NM_000201	3383	Hs.643447	NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
chr18.43751037.-	chr18	43751037	43751038	-	0	NA	Intergenic	AluSx|SINE|Alu	2951	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr8.107670061.+	chr8	107670061	107670062	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	25	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr20.3349454.+	chr20	3349454	3349455	+	0	NA	"intron (NM_001009984, intron 6 of 36)"	AluY|SINE|Alu	38855	NM_001009984	25943	Hs.516853	NM_001009984	ENSG00000088854	C20orf194	-	chromosome 20 open reading frame 194	protein-coding
chr12.12518368.+	chr12	12518368	12518369	+	0	NA	"intron (NM_058169, intron 2 of 3)"	AluJb|SINE|Alu	8348	NM_058169	118426	Hs.720779	NM_058169	ENSG00000165714	LOH12CR1	LOH1CR12	"loss of heterozygosity, 12, chromosomal region 1"	protein-coding
chr1.163468384.-	chr1	163468384	163468385	-	0	NA	Intergenic	SVA_A|Other|Other	-176661	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr2.173941018.-	chr2	173941018	173941019	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-453	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr14.106359701.-	chr14	106359701	106359702	-	0	NA	Intergenic	Intergenic	24137	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr16.78269403.-	chr16	78269403	78269404	-	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	-136076	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr2.44294794.-	chr2	44294794	44294795	-	0	NA	Intergenic	SVA_D|Other|Other	71650	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr14.52633545.+	chr14	52633545	52633546	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-97599	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
chr6.110678954.+	chr6	110678954	110678955	+	0	NA	"intron (NM_001123364, intron 1 of 4)"	CpG	521	NM_001123364	728464	Hs.722171	NM_001123364	ENSG00000053328	METTL24	C6orf186|dJ71D21.2	methyltransferase like 24	protein-coding
chr11.85399131.+	chr11	85399131	85399132	+	0	NA	Intergenic	AluY|SINE|Alu	-1811	NM_152723	220388	Hs.376241	NM_152723	ENSG00000179071	CCDC89	-	coiled-coil domain containing 89	protein-coding
chr3.12525913.-	chr3	12525913	12525914	-	0	NA	promoter-TSS (NM_001145394)	promoter-TSS (NM_001145394)	18	NM_001145393	80746	Hs.335550	NM_001145392	ENSG00000154743	TSEN2	PCH2B|SEN2|SEN2L	tRNA splicing endonuclease 2 homolog (S. cerevisiae)	protein-coding
chr8.11421265.+	chr8	11421265	11421266	+	0	NA	"intron (NM_001715, intron 12 of 12)"	"intron (NM_001715, intron 12 of 12)"	-12779	NR_040035	83655	Hs.742430	NR_040035	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	miscRNA
chr11.66512925.+	chr11	66512925	66512926	+	0	NA	"intron (NR_048553, intron 1 of 14)"	"intron (NR_048553, intron 1 of 14)"	718	NM_024650	79703	Hs.292088	NM_024650	ENSG00000173715	C11orf80	-	chromosome 11 open reading frame 80	protein-coding
chr21.43198252.+	chr21	43198252	43198253	+	0	NA	Intergenic	Intergenic	-11003	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr12.133030130.-	chr12	133030130	133030131	-	0	NA	Intergenic	Intergenic	37027	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr7.158240681.-	chr7	158240681	158240682	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-84824	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr4.42658291.+	chr4	42658291	42658292	+	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	831	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr10.35336420.+	chr10	35336420	35336421	+	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	26838	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr18.76189799.+	chr18	76189799	76189800	+	0	NA	Intergenic	CpG	-550476	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr20.50461013.+	chr20	50461013	50461014	+	0	NA	Intergenic	AluSq10|SINE|Alu	-41965	NM_020436	57167	Hs.517113	NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|ZNF797|dJ1112F19.1	sal-like 4 (Drosophila)	protein-coding
chr17.29255158.-	chr17	29255158	29255159	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6404	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr7.100044636.+	chr7	100044636	100044637	+	0	NA	Intergenic	AluY|SINE|Alu	-10542	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr2.170666388.-	chr2	170666388	170666389	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11066	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr5.141451783.+	chr5	141451783	141451784	+	0	NA	Intergenic	AluSq|SINE|Alu	-36541	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr6.150663076.-	chr6	150663076	150663077	-	0	NA	Intergenic	AluSp|SINE|Alu	26952	NM_203395	389434	Hs.310225	NM_001164694	ENSG00000009765	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
chr21.27813195.-	chr21	27813195	27813196	-	0	NA	Intergenic	AluSc8|SINE|Alu	-132386	NM_052954	116159	Hs.743438	NM_052954	ENSG00000166265	CYYR1	C21orf95	cysteine/tyrosine-rich 1	protein-coding
chr5.177808350.+	chr5	177808350	177808351	+	0	NA	"intron (NM_173465, intron 2 of 28)"	"intron (NM_173465, intron 2 of 28)"	-148547	NM_153373	85007	Hs.248746	NM_032921	ENSG00000175309	AGXT2L2	PHLU	alanine-glyoxylate aminotransferase 2-like 2	protein-coding
chr17.74894596.-	chr17	74894596	74894597	-	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	-25867	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr2.62740979.-	chr2	62740979	62740980	-	0	NA	Intergenic	AluY|SINE|Alu	7375	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr16.28874242.+	chr16	28874242	28874243	+	0	NA	promoter-TSS (NM_001145796)	promoter-TSS (NM_001145796)	-836	NM_001145795	25970	Hs.15744	NM_001145795	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
chr10.30144996.-	chr10	30144996	30144997	-	0	NA	Intergenic	AluSx3|SINE|Alu	120266	NM_003174	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
chr11.46617697.-	chr11	46617697	46617698	-	0	NA	Intergenic	AluY|SINE|Alu	2078	NM_001267782	55626	Hs.654644	NM_001267782	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy/beclin-1 regulator 1	protein-coding
chr17.45078384.+	chr17	45078384	45078385	+	0	NA	Intergenic	AluSg4|SINE|Alu	-21770	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr10.104238480.-	chr10	104238480	104238481	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17310	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr1.6132033.+	chr1	6132033	6132034	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25859	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr19.7123161.+	chr19	7123161	7123162	+	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	53690	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr7.2297174.+	chr7	2297174	2297175	+	0	NA	"intron (NM_013321, intron 8 of 10)"	CpG-23885	14634	NM_198953	4521	Hs.534331	NM_002452	ENSG00000106268	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
chr1.61398370.-	chr1	61398370	61398371	-	0	NA	Intergenic	AluY|SINE|Alu	144576	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr19.3220541.+	chr19	3220541	3220542	+	0	NA	Intergenic	AluSz|SINE|Alu	-4160	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr2.85661960.+	chr2	85661960	85661961	+	0	NA	promoter-TSS (NM_198482)	promoter-TSS (NM_198482)	42	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr17.8625950.-	chr17	8625950	8625951	-	0	NA	Intergenic	AluY|SINE|Alu	-22204	NM_144681	146849	Hs.121438	NM_001158261	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
chr20.32072314.+	chr20	32072314	32072315	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5614	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr12.2692385.-	chr12	2692385	2692386	-	0	NA	"intron (NM_001129846, intron 15 of 45)"	"intron (NM_001129846, intron 15 of 45)"	-107938	NR_045725	100652846	Hs.683896	NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	miscRNA
chr19.1202674.+	chr19	1202674	1202675	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3124	NM_000455	6794	Hs.515005	NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
chr12.94945459.+	chr12	94945459	94945460	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10106	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr12.132116853.-	chr12	132116853	132116854	-	0	NA	Intergenic	L1ME1|LINE|L1	78779	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chrX.153736377.+	chrX	153736377	153736378	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8189	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr9.1042197.-	chr9	1042197	1042198	-	0	NA	Intergenic	Intergenic	8149	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr20.48080611.+	chr20	48080611	48080612	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18570	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr1.55483763.-	chr1	55483763	55483764	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19146	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr22.48851531.+	chr22	48851531	48851532	+	0	NA	Intergenic	AluSx3|SINE|Alu	-33757	NM_001082967	25817	Hs.436854	NM_001082967	ENSG00000219438	FAM19A5	QLLK5208|TAFA-5|TAFA5|UNQ5208	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A5"	protein-coding
chr14.92023754.-	chr14	92023754	92023755	-	0	NA	Intergenic	SVA_D|Other|Other	47110	NM_032560	55671	Hs.533887	NM_017936	ENSG00000100796	SMEK1	FLFL1|KIAA2010|PP4R3A|smk-1|smk1	"SMEK homolog 1, suppressor of mek1 (Dictyostelium)"	protein-coding
chr2.101245832.+	chr2	101245832	101245833	+	0	NA	Intergenic	Intergenic	66414	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chrX.149533830.-	chrX	149533830	149533831	-	0	NA	"intron (NM_001177465, intron 1 of 4)"	CpG-28393	-2279	NM_001177465	10046	Hs.20136	NM_001177465	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind-like domain containing 1	protein-coding
chr17.66332133.-	chr17	66332133	66332134	-	0	NA	"intron (NM_001267727, intron 2 of 11)"	AluSx1|SINE|Alu	-44497	NM_001267727	22901	Hs.437249	NM_001267727		ARSG	-	arylsulfatase G	protein-coding
chr20.62657596.-	chr20	62657596	62657597	-	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	8101	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr12.26964577.+	chr12	26964577	26964578	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21554	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr8.1321522.-	chr8	1321522	1321523	-	0	NA	Intergenic	CpG	70695	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr11.100596568.-	chr11	100596568	100596569	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38161	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr1.218165390.-	chr1	218165390	218165391	-	0	NA	Intergenic	AluSq|SINE|Alu	-99148	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr17.2652862.-	chr17	2652862	2652863	-	0	NA	Intergenic	CpG	1386	NR_031654	100302208		NR_031654	ENSG00000221200	MIR1253	MIRN1253|hsa-mir-1253	microRNA 1253	miscRNA
chr17.80373922.-	chr17	80373922	80373923	-	0	NA	"intron (NM_175902, intron 1 of 9)"	AluSq2|SINE|Alu	2330	NM_173620	284004	Hs.744207	NM_173620	ENSG00000169660	HEXDC	-	"hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing"	protein-coding
chr1.183670802.+	chr1	183670802	183670803	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48354	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr12.75694251.-	chr12	75694251	75694252	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29585	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr6.152928212.+	chr6	152928212	152928213	+	0	NA	"intron (NM_182961, intron 3 of 145)"	AluY|SINE|Alu	29774	NM_033071	23345	Hs.12967	NM_033071	ENSG00000131018	SYNE1	8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2	"spectrin repeat containing, nuclear envelope 1"	protein-coding
chr17.79427779.+	chr17	79427779	79427780	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9565	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr1.21893048.-	chr1	21893048	21893049	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57190	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr16.89117856.+	chr16	89117856	89117857	+	0	NA	Intergenic	Intergenic	-42361	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr16.29422158.+	chr16	29422158	29422159	+	0	NA	Intergenic	AluSx|SINE|Alu	-38508	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr7.91257051.-	chr7	91257051	91257052	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252965	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr16.1311234.+	chr16	1311234	1311235	+	0	NA	Intergenic	Intergenic	4961	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr5.178157377.-	chr5	178157377	178157378	-	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	-326	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr5.179233687.+	chr5	179233687	179233688	+	0	NA	promoter-TSS (NM_001142299)	promoter-TSS (NM_001142299)	265	NM_014275	11282	Hs.567419	NM_014275	ENSG00000161013	MGAT4B	GNT-IV|GNT-IVB	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B"	protein-coding
chr2.229496818.-	chr2	229496818	229496819	-	0	NA	Intergenic	AluYc|SINE|Alu	450457	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr17.4432437.+	chr17	4432437	4432438	+	0	NA	"intron (NM_001124758, intron 3 of 12)"	AluSg7|SINE|Alu	26244	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr5.25535473.-	chr5	25535473	25535474	-	0	NA	Intergenic	AluY|SINE|Alu	694781	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr7.1564759.-	chr7	1564759	1564760	-	0	NA	Intergenic	AluY|SINE|Alu	5609	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr20.4729589.-	chr20	4729589	4729590	-	0	NA	Intergenic	Intergenic	8275	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr2.90482960.-	chr2	90482960	90482961	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365015	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr17.8625912.+	chr17	8625912	8625913	+	0	NA	Intergenic	AluY|SINE|Alu	22242	NM_144681	146849	Hs.121438	NM_001158261	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
chr19.1792204.-	chr19	1792204	1792205	-	0	NA	"intron (NR_047593, intron 18 of 28)"	"intron (NR_047593, intron 18 of 28)"	-20032	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr1.21759035.+	chr1	21759035	21759036	+	0	NA	Intergenic	AluSx|SINE|Alu	-7548	NR_046176	84224	Hs.325422	NM_001256416	ENSG00000142794	NBPF3	AE2	"neuroblastoma breakpoint family, member 3"	protein-coding
chr11.66887522.-	chr11	66887522	66887523	-	0	NA	"intron (NM_012308, intron 1 of 20)"	"intron (NM_012308, intron 1 of 20)"	-782	NR_027473	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr18.5238538.+	chr18	5238538	5238539	+	0	NA	promoter-TSS (NR_026849)	promoter-TSS (NR_026849)	439	NR_015389	339290	Hs.727464	NR_015389	ENSG00000263753	LINC00667	-	long intergenic non-protein coding RNA 667	miscRNA
chr14.76577612.-	chr14	76577612	76577613	-	0	NA	Intergenic	AluSx1|SINE|Alu	40647	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr13.31023967.+	chr13	31023967	31023968	+	0	NA	Intergenic	AluSq2|SINE|Alu	16114	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr20.5213520.+	chr20	5213520	5213521	+	0	NA	Intergenic	AluJr4|SINE|Alu	81495	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr2.129072407.-	chr2	129072407	129072408	-	0	NA	"intron (NM_004807, intron 1 of 1)"	"intron (NM_004807, intron 1 of 1)"	-3764	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr7.156795086.+	chr7	156795086	156795087	+	0	NA	Intergenic	Intergenic	7043	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr1.240947771.+	chr1	240947771	240947772	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172309	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr2.38825083.+	chr2	38825083	38825084	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5095	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr5.176075309.-	chr5	176075309	176075310	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-921	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr6.126100190.-	chr6	126100190	126100191	-	0	NA	Intergenic	AluY|SINE|Alu	2117	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr1.197234036.-	chr1	197234036	197234037	-	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	3298	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr10.32239016.+	chr10	32239016	32239017	+	0	NA	Intergenic	AluY|SINE|Alu	-21212	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr22.50621646.-	chr22	50621646	50621647	-	0	NA	Intergenic	Intergenic	2714	NM_025204	80305	Hs.741417	NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
chr19.49462823.+	chr19	49462823	49462824	+	0	NA	"intron (NM_138761, intron 4 of 5)"	AluSq2|SINE|Alu	4706	NM_138764	581	Hs.624291	NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2-associated X protein	protein-coding
chr12.50222194.-	chr12	50222194	50222195	-	0	NA	promoter-TSS (NR_027500)	promoter-TSS (NR_027500)	-14	NM_001037806	57701	Hs.143067	NM_001037806	ENSG00000167566	NCKAP5L	KIAA1602	NCK-associated protein 5-like	protein-coding
chr18.33543837.+	chr18	33543837	33543838	+	0	NA	Intergenic	AluY|SINE|Alu	-8751	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr19.2492332.-	chr19	2492332	2492333	-	0	NA	Intergenic	AluSz|SINE|Alu	-16209	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr4.187811372.+	chr4	187811372	187811373	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-166385	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chr6.158439004.+	chr6	158439004	158439005	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	924	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr8.609806.+	chr8	609806	609807	+	0	NA	Intergenic	Intergenic	71420	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr7.148386465.+	chr7	148386465	148386466	+	0	NA	Intergenic	AluSx|SINE|Alu	-9468	NM_003592	8454	Hs.146806	NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
chr1.100493678.-	chr1	100493678	100493679	-	0	NA	Intergenic	AluSx|SINE|Alu	10111	NM_033055	64645	Hs.124156	NM_033055	ENSG00000156875	HIAT1	-	hippocampus abundant transcript 1	protein-coding
chr6.155577714.-	chr6	155577714	155577715	-	0	NA	"exon (NM_001010927, exon 13 of 13)"	"exon (NM_001010927, exon 13 of 13)"	7433	NM_001001346	49861	Hs.567491	NM_001001346	ENSG00000171217	CLDN20	-	claudin 20	protein-coding
chr1.3461452.-	chr1	3461452	3461453	-	0	NA	"intron (NM_001409, intron 4 of 36)"	"intron (NM_001409, intron 4 of 36)"	-15902	NR_030277	693135		NR_030277		MIR551A	MIRN551A	microRNA 551a	miscRNA
chr3.172358591.-	chr3	172358591	172358592	-	0	NA	"intron (NM_001146276, intron 3 of 4)"	AluY|SINE|Alu	-70417	NM_001146278	57552	Hs.444099	NM_001146276	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
chr6.165247268.+	chr6	165247268	165247269	+	0	NA	Intergenic	AluY|SINE|Alu	475843	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr3.14349513.-	chr3	14349513	14349514	-	0	NA	Intergenic	Intergenic	94593	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr11.134632878.-	chr11	134632878	134632879	-	0	NA	Intergenic	CpG	-326502	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr17.2721906.+	chr17	2721906	2721907	+	0	NA	"intron (NM_015085, intron 2 of 24)"	AluSz|SINE|Alu	22174	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr19.41641932.+	chr19	41641932	41641933	+	0	NA	Intergenic	CpG	21579	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr10.133869104.+	chr10	133869104	133869105	+	0	NA	Intergenic	Intergenic	-49209	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr11.17905664.-	chr11	17905664	17905665	-	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	-128973	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr9.14830637.+	chr9	14830637	14830638	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51106	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr6.3118666.-	chr6	3118666	3118667	-	0	NA	promoter-TSS (NR_026650)	promoter-TSS (NR_026650)	260	NR_026650	670	Hs.10136	NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase-like (serine hydrolase)	protein-coding
chr9.14963534.+	chr9	14963534	14963535	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-29791	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
chr2.10424823.+	chr2	10424823	10424824	+	0	NA	Intergenic	Intergenic	-18207	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr9.99114722.+	chr9	99114722	99114723	+	0	NA	"intron (NM_007001, intron 4 of 11)"	AluSx|SINE|Alu	31270	NM_007001	11046	Hs.731624	NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	"solute carrier family 35, member D2"	protein-coding
chr19.13976579.+	chr19	13976579	13976580	+	0	NA	Intergenic	CpG	-8934	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	miscRNA
chr6.21897053.-	chr6	21897053	21897054	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230378	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr16.78269410.-	chr16	78269410	78269411	-	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	-136083	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr19.7123158.+	chr19	7123158	7123159	+	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	53687	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr11.83150057.+	chr11	83150057	83150058	+	0	NA	Intergenic	AluSx|SINE|Alu	-152680	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr14.105618923.-	chr14	105618923	105618924	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16238	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr19.36759700.-	chr19	36759700	36759701	-	0	NA	Intergenic	SST1|Satellite|centr	42545	NR_029389	100134317	Hs.729610	NR_029389		LOC100134317	-	uncharacterized LOC100134317	miscRNA
chr11.101081713.+	chr11	101081713	101081714	+	0	NA	Intergenic	AluSc8|SINE|Alu	-81169	NM_000926	5241	Hs.742403	NM_000926	ENSG00000082175	PGR	NR3C3|PR	progesterone receptor	protein-coding
chr10.1995014.+	chr10	1995014	1995015	+	0	NA	Intergenic	Intergenic	61528	NR_040253	282980	Hs.576810	NR_040253	ENSG00000234962	LINC00700	-	long intergenic non-protein coding RNA 700	miscRNA
chr15.100080055.-	chr15	100080055	100080056	-	0	NA	Intergenic	AluSq2|SINE|Alu	26078	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr7.936480.+	chr7	936480	936481	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20289	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr14.60892213.+	chr14	60892213	60892214	+	0	NA	Intergenic	AluYa5|SINE|Alu	60551	NM_174978	317761	Hs.335754	NM_174978	ENSG00000179008	C14orf39	Six6os1	chromosome 14 open reading frame 39	protein-coding
chr16.78282865.+	chr16	78282865	78282866	+	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	149538	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr2.85639005.+	chr2	85639005	85639006	+	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	-1185	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr5.132165683.+	chr5	132165683	132165684	+	0	NA	"intron (NM_001172700, intron 1 of 9)"	CpG	907	NM_001172700	134549	Hs.519574	NM_001172700	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
chr20.46387695.-	chr20	46387695	46387696	-	0	NA	"intron (NM_198596, intron 1 of 20)"	"intron (NM_198596, intron 1 of 20)"	-27113	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr11.16894124.-	chr11	16894124	16894125	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133976	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr4.8629367.+	chr4	8629367	8629368	+	0	NA	Intergenic	AluSx1|SINE|Alu	34980	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr17.2636647.-	chr17	2636647	2636648	-	0	NA	Intergenic	AluSp|SINE|Alu	-14829	NR_031654	100302208		NR_031654	ENSG00000221200	MIR1253	MIRN1253|hsa-mir-1253	microRNA 1253	miscRNA
chr1.28703582.-	chr1	28703582	28703583	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7489	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr2.120775536.-	chr2	120775536	120775537	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4751	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr2.213546701.+	chr2	213546701	213546702	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143349	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr8.141030085.+	chr8	141030085	141030086	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314786	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr17.7184301.+	chr17	7184301	7184302	+	0	NA	promoter-TSS (NM_001042)	promoter-TSS (NM_001042)	-753	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr20.55220986.-	chr20	55220986	55220987	-	0	NA	Intergenic	AluY|SINE|Alu	-16628	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr17.40313149.-	chr17	40313149	40313150	-	0	NA	"intron (NM_012285, intron 15 of 16)"	AluSc8|SINE|Alu	6087	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr12.118663791.+	chr12	118663791	118663792	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89921	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr1.235537121.-	chr1	235537121	235537122	-	0	NA	"intron (NM_001079515, intron 1 of 16)"	AluY|SINE|Alu	-6393	NM_001079515	6905	Hs.498143	NM_001079515	ENSG00000116957	TBCE	HRD|KCS|KCS1|pac2	tubulin folding cofactor E	protein-coding
chr6.58778953.+	chr6	58778953	58778954	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-491229	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr2.239047381.+	chr2	239047381	239047382	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	18	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr1.161508241.-	chr1	161508241	161508242	-	0	NA	Intergenic	AluYf4|SINE|Alu	-11577	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chrX.118871991.-	chrX	118871991	118871992	-	0	NA	Intergenic	AluYc|SINE|Alu	20585	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr19.11043349.-	chr19	11043349	11043350	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3925	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr6.33806253.+	chr6	33806253	33806254	+	0	NA	Intergenic	Intergenic	-34460	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr2.75147155.-	chr2	75147155	75147156	-	0	NA	Intergenic	CpG	38620	NM_019896	56655	Hs.469060	NM_019896		POLE4	YHHQ1|p12	"polymerase (DNA-directed), epsilon 4, accessory subunit"	protein-coding
chr3.45348425.+	chr3	45348425	45348426	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80611	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr14.102101604.+	chr14	102101604	102101605	+	0	NA	Intergenic	Intergenic	73916	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr16.3109393.+	chr16	3109393	3109394	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5920	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr12.118282820.-	chr12	118282820	118282821	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123208	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr16.57234840.-	chr16	57234840	57234841	-	0	NA	"intron (NM_133368, intron 1 of 14)"	SVA_D|Other|Other	-14599	NM_133368	89970	Hs.460885	NM_133368		RSPRY1	-	ring finger and SPRY domain containing 1	protein-coding
chr5.87629172.-	chr5	87629172	87629173	-	0	NA	"intron (NR_039995, intron 2 of 2)"	AluY|SINE|Alu	-64331	NR_039994	100505894	Hs.559426	NR_039993	ENSG00000247828	TMEM161B-AS1	-	TMEM161B antisense RNA 1	miscRNA
chr17.48422578.+	chr17	48422578	48422579	+	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	-815	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr15.90789271.+	chr15	90789271	90789272	+	0	NA	Intergenic	AluSx|SINE|Alu	-3493	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chrX.119040404.+	chrX	119040404	119040405	+	0	NA	"intron (NM_001008534, intron 4 of 5)"	AluSc8|SINE|Alu	10468	NM_001008535	158798	Hs.592245	NM_001008534	ENSG00000186471	AKAP14	AKAP28|PRKA14	A kinase (PRKA) anchor protein 14	protein-coding
chr4.4145141.-	chr4	4145141	4145142	-	0	NA	Intergenic	CpG	-83480	NM_177998	133060	Hs.534544	NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
chr19.47628037.-	chr19	47628037	47628038	-	0	NA	Intergenic	AluY|SINE|Alu	6043	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chrX.53123345.+	chrX	53123345	53123346	+	0	NA	Intergenic	CpG	11803	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr18.54318538.+	chr18	54318538	54318539	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-78	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr22.24237209.+	chr22	24237209	24237210	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	644	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr2.163473813.+	chr2	163473813	163473814	+	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	221444	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chr17.4697349.+	chr17	4697349	4697350	+	0	NA	Intergenic	AluY|SINE|Alu	-2090	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr20.33283473.-	chr20	33283473	33283474	-	0	NA	Intergenic	AluY|SINE|Alu	8675	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr3.124468929.+	chr3	124468929	124468930	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19716	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chrX.78605618.-	chrX	78605618	78605619	-	0	NA	Intergenic	AluSx1|SINE|Alu	-17431	NM_004867	9452	Hs.17109	NM_001171581	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
chr8.99151274.+	chr8	99151274	99151275	+	0	NA	"intron (NM_001145860, intron 9 of 15)"	AluSx1|SINE|Alu	21206	NM_015029	10940	Hs.252828	NM_001145860	ENSG00000104356	POP1	-	"processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)"	protein-coding
chr5.126565044.-	chr5	126565044	126565045	-	0	NA	Intergenic	CpG	61412	NM_001256545	84466	Hs.438709	NM_001256545	ENSG00000145794	MEGF10	EMARDD	multiple EGF-like-domains 10	protein-coding
chr16.71647906.-	chr16	71647906	71647907	-	0	NA	Intergenic	AluSz|SINE|Alu	12150	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr16.31103063.-	chr16	31103063	31103064	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	2933	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr15.76627314.+	chr15	76627314	76627315	+	0	NA	Intergenic	AluSg|SINE|Alu	-1833	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr1.101786831.+	chr1	101786831	101786832	+	0	NA	Intergenic	AluY|SINE|Alu	19620	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr2.213546693.-	chr2	213546693	213546694	-	0	NA	Intergenic	AluSc8|SINE|Alu	143341	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr3.15147898.+	chr3	15147898	15147899	+	0	NA	Intergenic	AluSz|SINE|Alu	-7243	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr8.27141309.+	chr8	27141309	27141310	+	0	NA	Intergenic	Intergenic	-25406	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr4.85768643.-	chr4	85768643	85768644	-	0	NA	"intron (NM_014991, intron 5 of 67)"	AluSc8|SINE|Alu	-118901	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr19.17610132.-	chr19	17610132	17610133	-	0	NA	"intron (NM_198580, intron 7 of 11)"	LTR13|LTR|ERVK	12300	NM_012088	25796	Hs.466165	NM_012088	ENSG00000130313	PGLS	6PGL	6-phosphogluconolactonase	protein-coding
chr11.122933284.-	chr11	122933284	122933285	-	0	NA	promoter-TSS (NM_006597)	promoter-TSS (NM_006597)	383	NM_153201	3312	Hs.180414	NM_006597	ENSG00000109971	HSPA8	HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP1|NIP71	heat shock 70kDa protein 8	protein-coding
chr19.15718057.+	chr19	15718057	15718058	+	0	NA	Intergenic	AluY|SINE|Alu	-7972	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr7.29250893.+	chr7	29250893	29250894	+	0	NA	"intron (NM_004067, intron 1 of 12)"	AluY|SINE|Alu	16772	NM_004067	1124	Hs.710429	NM_001039936	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
chr17.40316777.+	chr17	40316777	40316778	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9715	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr5.177823283.-	chr5	177823283	177823284	-	0	NA	"intron (NM_173465, intron 2 of 28)"	CpG	163480	NM_153373	85007	Hs.248746	NM_032921	ENSG00000175309	AGXT2L2	PHLU	alanine-glyoxylate aminotransferase 2-like 2	protein-coding
chr4.1772623.+	chr4	1772623	1772624	+	0	NA	Intergenic	Intergenic	-22416	NM_000142	2261	Hs.1420	NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
chr3.43950009.+	chr3	43950009	43950010	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-205695	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1	microRNA 138-1	miscRNA
chr19.54151513.-	chr19	54151513	54151514	-	0	NA	Intergenic	CpG	-16203	NM_001012728	503834	Hs.579941	NM_001012728	ENSG00000204595	DPRX	-	divergent-paired related homeobox	protein-coding
chrX.99100654.-	chrX	99100654	99100655	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94187	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr20.30619217.-	chr20	30619217	30619218	-	0	NA	"3' UTR (NM_080625, exon 9 of 9)"	"3' UTR (NM_080625, exon 9 of 9)"	20774	NM_001172131	3055	Hs.655210	NM_001172129	ENSG00000101336	HCK	JTK9|p59Hck|p61Hck	hemopoietic cell kinase	protein-coding
chr11.34488061.+	chr11	34488061	34488062	+	0	NA	"intron (NM_001752, intron 10 of 12)"	AluY|SINE|Alu	27589	NM_001752	847	Hs.502302	NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
chr5.114712389.-	chr5	114712389	114712390	-	0	NA	Intergenic	AluYc3|SINE|Alu	79931	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr6.2221764.+	chr6	2221764	2221765	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24104	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr8.55038040.+	chr8	55038040	55038041	+	0	NA	Intergenic	SVA_F|Other|Other	-9741	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
chr7.2632856.+	chr7	2632856	2632857	+	0	NA	"intron (NM_152558, intron 15 of 21)"	"intron (NM_152558, intron 15 of 21)"	34224	NM_001100390	23288	Hs.520627	NM_001100390	ENSG00000106012	IQCE	1700028P05Rik	IQ motif containing E	protein-coding
chr17.18179038.+	chr17	18179038	18179039	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14614	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr1.8021819.-	chr1	8021819	8021820	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-105	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr21.42048866.-	chr21	42048866	42048867	-	0	NA	"intron (NM_001389, intron 3 of 32)"	"intron (NM_001389, intron 3 of 32)"	46173	NR_046774	100874326	Hs.679746	NR_046774		DSCAM-IT1	zag4	DSCAM intronic transcript 1 (non-protein coding)	miscRNA
chr22.51010954.+	chr22	51010954	51010955	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5552	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr17.73439490.+	chr17	73439490	73439491	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13174	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr1.145400445.-	chr1	145400445	145400446	-	0	NA	Intergenic	AluSq2|SINE|Alu	12746	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr19.33557619.-	chr19	33557619	33557620	-	0	NA	Intergenic	Intergenic	1795	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr10.104238449.+	chr10	104238449	104238450	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17279	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr19.17580143.+	chr19	17580143	17580144	+	0	NA	Intergenic	Intergenic	-1157	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr11.63286724.-	chr11	63286724	63286725	-	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	-11265	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr15.41539517.-	chr15	41539517	41539518	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16080	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr12.31229225.+	chr12	31229225	31229226	+	0	NA	"intron (NM_004399, intron 1 of 25)"	MLT1M|LTR|ERVL-MaLR	-2444	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	-	DDX11 antisense RNA 1	miscRNA
chr19.12606201.-	chr19	12606201	12606202	-	0	NA	Intergenic	CpG	10569	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr1.31586357.-	chr1	31586357	31586358	-	0	NA	Intergenic	AluY|SINE|Alu	47793	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr1.26670748.-	chr1	26670748	26670749	-	0	NA	"exon (NM_001039775, exon 2 of 20)"	"exon (NM_001039775, exon 2 of 20)"	-9873	NM_001039775	55057	Hs.128738	NM_017977		AIM1L	CRYBG2	absent in melanoma 1-like	protein-coding
chr19.16374072.+	chr19	16374072	16374073	+	0	NA	Intergenic	AluSx1|SINE|Alu	-61579	NM_016270	10365	Hs.744182	NM_016270	ENSG00000127528	KLF2	LKLF	Kruppel-like factor 2 (lung)	protein-coding
chr2.467471.+	chr2	467471	467472	+	0	NA	Intergenic	Intergenic	-179163	NM_001002919	285016	Hs.355207	NM_001002919	ENSG00000189292	FAM150B	PRO1097|RGPG542	"family with sequence similarity 150, member B"	protein-coding
chr19.48836557.-	chr19	48836557	48836558	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7928	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr16.15684177.-	chr16	15684177	15684178	-	0	NA	Intergenic	AluY|SINE|Alu	-52846	NM_001184998	9665	Hs.173524	NM_019081	ENSG00000166783	KIAA0430	LKAP|MARF1|PPP1R34	KIAA0430	protein-coding
chr19.1149414.-	chr19	1149414	1149415	-	0	NA	"exon (NM_014963, exon 3 of 32)"	"exon (NM_014963, exon 3 of 32)"	17141	NM_001100122	22904	Hs.408708	NM_001100122	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
chr19.58458745.+	chr19	58458745	58458746	+	0	NA	"intron (NM_005773, intron 1 of 2)"	CpG	332	NM_005773	10172	Hs.596242	NM_005773	ENSG00000152454	ZNF256	BMZF-3|BMZF3	zinc finger protein 256	protein-coding
chr2.242750641.+	chr2	242750641	242750642	+	0	NA	"intron (NM_001167600, intron 1 of 3)"	"intron (NM_001167600, intron 1 of 3)"	481	NM_001167601	129807	Hs.551747	NM_001167599	ENSG00000204099	NEU4	-	sialidase 4	protein-coding
chr17.48630998.-	chr17	48630998	48630999	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6548	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr20.45557341.+	chr20	45557341	45557342	+	0	NA	"intron (NM_005244, intron 1 of 15)"	"intron (NM_005244, intron 1 of 15)"	34078	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr4.26862252.-	chr4	26862252	26862253	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	61	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr19.1194639.+	chr19	1194639	1194640	+	0	NA	Intergenic	CpG	-11159	NM_000455	6794	Hs.515005	NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
chr5.76691227.+	chr5	76691227	76691228	+	0	NA	"intron (NM_001029853, intron 9 of 20)"	AluY|SINE|Alu	97105	NM_018268	55255	Hs.482573	NM_018268		WDR41	-	WD repeat domain 41	protein-coding
chr10.104255194.-	chr10	104255194	104255195	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7318	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr20.32042419.-	chr20	32042419	32042420	-	0	NA	Intergenic	AluY|SINE|Alu	10721	NM_003098	6640	Hs.31121	NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	"syntrophin, alpha 1"	protein-coding
chr13.46931925.+	chr13	46931925	46931926	+	0	NA	"intron (NM_025113, intron 9 of 14)"	AluSx|SINE|Alu	29710	NM_025113	80183	Hs.98117	NM_025113	ENSG00000102445	KIAA0226L	C13orf18	KIAA0226-like	protein-coding
chr2.173941037.-	chr2	173941037	173941038	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-472	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr19.5409953.-	chr19	5409953	5409954	-	0	NA	Intergenic	AluY|SINE|Alu	45473	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr5.70529204.+	chr5	70529204	70529205	+	0	NA	"intron (NR_033968, intron 1 of 3).2"	"intron (NR_033968, intron 1 of 3).2"	25918	NR_033968	100049076	Hs.665231	NR_033968		GUSBP9	-	"glucuronidase, beta pseudogene 9"	pseudo
chr10.122148843.-	chr10	122148843	122148844	-	0	NA	Intergenic	AluSx1|SINE|Alu	67623	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chrX.51075600.+	chrX	51075600	51075601	+	0	NA	"intron (NM_153183, intron 1 of 2)"	CpG	517	NM_153183	170685	Hs.375178	NM_153183	ENSG00000122824	NUDT10	APS2|DIPP3a|hDIPP3alpha	nudix (nucleoside diphosphate linked moiety X)-type motif 10	protein-coding
chr16.749410.-	chr16	749410	749411	-	0	NA	"intron (NM_153350, intron 1 of 5)"	"intron (NM_153350, intron 1 of 5)"	-6415	NM_153350	146330	Hs.513244	NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine-rich repeat protein 16	protein-coding
chr7.95234867.-	chr7	95234867	95234868	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8942	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr11.72310134.-	chr11	72310134	72310135	-	0	NA	"intron (NM_002599, intron 4 of 30)"	"intron (NM_002599, intron 4 of 30)"	-16040	NR_029603	406931		NR_029603		MIR139	MIR139-3p|MIRN139	microRNA 139	miscRNA
chr6.163113631.-	chr6	163113631	163113632	-	0	NA	"intron (NM_004562, intron 1 of 11)"	MER77|LTR|ERVL	34533	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr5.3324801.-	chr5	3324801	3324802	-	0	NA	Intergenic	CpG	-211407	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr2.19560991.+	chr2	19560991	19560992	+	0	NA	Intergenic	CpG	-2619	NM_145260	130497	Hs.123933	NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related 1 (Drosophila)	protein-coding
chr1.197418638.+	chr1	197418638	197418639	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181304	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr13.114446678.+	chr13	114446678	114446679	+	0	NA	Intergenic	Intergenic	7384	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr6.123144190.-	chr6	123144190	123144191	-	0	NA	Intergenic	AluY|SINE|Alu	-34219	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr9.44792260.-	chr9	44792260	44792261	-	0	NA	Intergenic	AluSq2|SINE|Alu	197976	NR_027421	100132948	Hs.645763	NR_027421	ENSG00000154537	FAM27C	FAM27A3|bA374M1.5	"family with sequence similarity 27, member C"	miscRNA
chrX.29584323.+	chrX	29584323	29584324	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-649352	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chrX.40029687.-	chrX	40029687	40029688	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6895	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.15560349.+	chr19	15560349	15560350	+	0	NA	promoter-TSS (NR_031716)	promoter-TSS (NR_031716)	-10	NR_031716	100302127		NR_031716	ENSG00000222417	MIR1470	MIRN1470|hsa-mir-1470	microRNA 1470	miscRNA
chr1.5005201.+	chr1	5005201	5005202	+	0	NA	Intergenic	Intergenic	290096	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chrX.82763724.-	chrX	82763724	82763725	-	0	NA	"exon (NM_000307, exon 1 of 1)"	"exon (NM_000307, exon 1 of 1)"	-455	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr17.42869191.+	chr17	42869191	42869192	+	0	NA	Intergenic	AluY|SINE|Alu	32623	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr10.7542197.-	chr10	7542197	7542198	-	0	NA	Intergenic	AluSc8|SINE|Alu	88749	NM_001029880	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
chr16.1332323.-	chr16	1332323	1332324	-	0	NA	Intergenic	AluSx|SINE|Alu	-26050	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr2.61701816.+	chr2	61701816	61701817	+	0	NA	Intergenic	AluSg|SINE|Alu	-3967	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr3.189144219.+	chr3	189144219	189144220	+	0	NA	Intergenic	AluSx|SINE|Alu	-185836	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	miscRNA
chr11.62551846.+	chr11	62551846	62551847	+	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	-3028	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr15.76553903.+	chr15	76553903	76553904	+	0	NA	"intron (NM_000126, intron 9 of 11)"	"intron (NM_000126, intron 9 of 11)"	-1410	NR_028510	7302	Hs.684881	NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
chr5.1200379.+	chr5	1200379	1200380	+	0	NA	Intergenic	Intergenic	-1331	NM_001003841	340024	Hs.481478	NM_001003841	ENSG00000174358	SLC6A19	B0AT1|HND	"solute carrier family 6 (neutral amino acid transporter), member 19"	protein-coding
chr17.44270211.+	chr17	44270211	44270212	+	0	NA	promoter-TSS (NM_015443)	promoter-TSS (NM_015443)	-45	NM_001193466	284058	Hs.648744	NM_001193465	ENSG00000120071	KANSL1	CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
chr7.99630237.-	chr7	99630237	99630238	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	-17018	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr16.11293935.+	chr16	11293935	11293936	+	0	NA	Intergenic	AluSg7|SINE|Alu	56104	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
chrX.48703064.-	chrX	48703064	48703065	-	0	NA	Intergenic	AluSx|SINE|Alu	9028	NM_013271	27344	Hs.522640	NM_013271	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
chr7.1156303.+	chr7	1156303	1156304	+	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	21590	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chr19.19174379.-	chr19	19174379	19174380	-	0	NA	promoter-TSS (NM_178526)	promoter-TSS (NM_178526)	424	NM_178526	284439	Hs.303669	NM_178526	ENSG00000181035	SLC25A42	-	"solute carrier family 25, member 42"	protein-coding
chr4.55034942.+	chr4	55034942	55034943	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60322	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr22.46303232.-	chr22	46303232	46303233	-	0	NA	Intergenic	Intergenic	-69776	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr4.138974427.-	chr4	138974427	138974428	-	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	35741	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr4.190662158.+	chr4	190662158	190662159	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199816	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr11.18743358.-	chr11	18743358	18743359	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4419	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr4.152027781.+	chr4	152027781	152027782	+	0	NA	Intergenic	AluSx3|SINE|Alu	2802	NR_000007	8944		NR_000007		SNORD73A	RNU73|RNU73A|U73|U73a	"small nucleolar RNA, C/D box 73A"	snoRNA
chr5.176482973.-	chr5	176482973	176482974	-	0	NA	"intron (NM_012279, intron 5 of 6)"	AluSx|SINE|Alu	30948	NM_213647	2264	Hs.165950	NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
chr7.2678205.+	chr7	2678205	2678206	+	0	NA	"intron (NM_025250, intron 1 of 13)"	"intron (NM_025250, intron 1 of 13)"	6602	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety homolog 3 (Drosophila)	protein-coding
chr7.33176768.-	chr7	33176768	33176769	-	0	NA	"intron (NM_014451, intron 1 of 20)"	MER52D|LTR|ERV1	-7616	NM_001033605	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr3.139489280.+	chr3	139489280	139489281	+	0	NA	Intergenic	AluY|SINE|Alu	-92395	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr20.11974565.+	chr20	11974565	11974566	+	0	NA	Intergenic	AluY|SINE|Alu	76000	NM_014962	22903	Hs.709366	NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
chr22.50834546.+	chr22	50834546	50834547	+	0	NA	"intron (NM_001242898, intron 3 of 23)"	AluSx|SINE|Alu	52800	NM_001242900	9701	Hs.740776	NM_001242898	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	"protein phosphatase 6, regulatory subunit 2"	protein-coding
chr13.114899257.-	chr13	114899257	114899258	-	0	NA	Intergenic	Intergenic	1162	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chrX.99617551.-	chrX	99617551	99617552	-	0	NA	"intron (NM_020766, intron 2 of 4)"	AluY|SINE|Alu	-47720	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr2.128430591.-	chr2	128430591	128430592	-	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	-2173	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr4.86391848.-	chr4	86391848	86391849	-	0	NA	Intergenic	AluY|SINE|Alu	4436	NM_001025616	83478	Hs.444229	NM_001025616	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
chr2.240750904.-	chr2	240750904	240750905	-	0	NA	Intergenic	Intergenic	-66350	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chr19.34248223.-	chr19	34248223	34248224	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39528	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr1.59938095.+	chr1	59938095	59938096	+	0	NA	"intron (NM_018291, intron 6 of 15)"	LTR12C|LTR|ERV1	162345	NM_001244714	55277	Hs.444301	NM_001113411	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
chr17.4926591.-	chr17	4926591	4926592	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12136	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr2.43254185.+	chr2	43254185	43254186	+	0	NA	Intergenic	Intergenic	199560	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr12.77459819.+	chr12	77459819	77459820	+	0	NA	promoter-TSS (NM_203394)	promoter-TSS (NM_203394)	-459	NM_203394	144455	Hs.416375	NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
chr2.227660834.-	chr2	227660834	227660835	-	0	NA	"exon (NM_005544, exon 1 of 2)"	"exon (NM_005544, exon 1 of 2)"	-2672	NM_005544	3667	Hs.471508	NM_005544		IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
chr1.42522879.-	chr1	42522879	42522880	-	0	NA	Intergenic	AluY|SINE|Alu	21283	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr4.114652853.+	chr4	114652853	114652854	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30230	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr8.43274645.+	chr8	43274645	43274646	+	0	NA	Intergenic	SVA_D|Other|Other	127060	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr21.46995424.-	chr21	46995424	46995425	-	0	NA	Intergenic	Intergenic	33039	NM_194255	6573	Hs.736903	NM_001205206	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	"solute carrier family 19 (folate transporter), member 1"	protein-coding
chr3.125802762.+	chr3	125802762	125802763	+	0	NA	"intron (NM_017836, intron 1 of 10)"	CpG	372	NM_017836	54946	Hs.573007	NM_001008485	ENSG00000114544	SLC41A3	SLC41A1-L2	"solute carrier family 41, member 3"	protein-coding
chr6.150275504.+	chr6	150275504	150275505	+	0	NA	Intergenic	CpG	-9639	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr19.53979669.-	chr19	53979669	53979670	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8680	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr10.69628872.-	chr10	69628872	69628873	-	0	NA	Intergenic	AluSx|SINE|Alu	15555	NM_012238	23411	Hs.369779	NM_001142498	ENSG00000096717	SIRT1	SIR2L1	sirtuin 1	protein-coding
chrX.153128969.-	chrX	153128969	153128970	-	0	NA	"exon (NM_000425, exon 26 of 28)"	"exon (NM_000425, exon 26 of 28)"	-12430	NM_000425	3897	Hs.522818	NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
chr2.25143575.+	chr2	25143575	25143576	+	0	NA	Intergenic	CpG	-1520	NM_004036	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC3	adenylate cyclase 3	protein-coding
chr2.240402005.-	chr2	240402005	240402006	-	0	NA	Intergenic	Intergenic	79362	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.138065695.-	chr9	138065695	138065696	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7760	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr1.109995557.+	chr1	109995557	109995558	+	0	NA	Intergenic	AluY|SINE|Alu	-13543	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr17.29255171.-	chr17	29255171	29255172	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6417	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr16.70356425.-	chr16	70356425	70356426	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23363	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr11.16894096.-	chr11	16894096	16894097	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133948	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chrX.135673765.+	chrX	135673765	135673766	+	0	NA	Intergenic	AluSq2|SINE|Alu	40728	NR_030631	100126324		NR_030631		MIR934	MIRN934|hsa-mir-934	microRNA 934	miscRNA
chr2.75937866.-	chr2	75937866	75937867	-	0	NA	promoter-TSS (NM_001201334)	promoter-TSS (NM_001201334)	134	NM_001201334	6936	Hs.710597	NM_001201334	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
chr20.60952047.-	chr20	60952047	60952048	-	0	NA	Intergenic	MER20|DNA|hAT-Charlie	9679	NM_005560	3911	Hs.473256	NM_005560	ENSG00000130702	LAMA5	-	"laminin, alpha 5"	protein-coding
chr19.11591433.-	chr19	11591433	11591434	-	0	NA	"5' UTR (NM_001420, exon 1 of 7)"	"5' UTR (NM_001420, exon 1 of 7)"	-370	NM_032281	1995	Hs.1701	NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	"ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)"	protein-coding
chrX.100277484.-	chrX	100277484	100277485	-	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	-29621	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr18.29434847.+	chr18	29434847	29434848	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88244	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr10.46833210.-	chr10	46833210	46833211	-	0	NA	Intergenic	AluY|SINE|Alu	64431	NR_027632	414241	Hs.594331	NR_027632	ENSG00000165874	FAM35BP	FAM35B|bA38L15.1	"family with sequence similarity 35, member A pseudogene"	pseudo
chr9.135947005.-	chr9	135947005	135947006	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9640	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr8.11739664.-	chr8	11739664	11739665	-	0	NA	Intergenic	AluSx1|SINE|Alu	14018	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr14.40071873.-	chr14	40071873	40071874	-	0	NA	Intergenic	AluY|SINE|Alu	170169	NM_203301	254170	Hs.146632	NM_203301		FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
chr5.74743625.-	chr5	74743625	74743626	-	0	NA	"intron (NM_031361, intron 3 of 16)"	AluJo|SINE|Alu	-63829	NM_005713	10087	Hs.270437	NM_001130105	ENSG00000113163	COL4A3BP	CERT|CERTL|GPBP|STARD11	"collagen, type IV, alpha 3 (Goodpasture antigen) binding protein"	protein-coding
chr5.176023484.+	chr5	176023484	176023485	+	0	NA	TTS (NM_017675)	TTS (NM_017675)	13647	NM_052899	114787	Hs.150549	NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
chr17.70637583.-	chr17	70637583	70637584	-	0	NA	promoter-TSS (NR_033876)	promoter-TSS (NR_033876)	972	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	miscRNA
chr8.90586393.-	chr8	90586393	90586394	-	0	NA	Intergenic	AluY|SINE|Alu	183582	NM_003821	8767	Hs.103755	NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor-interacting serine-threonine kinase 2	protein-coding
chr1.217314036.+	chr1	217314036	217314037	+	0	NA	Intergenic	Intergenic	-2939	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr11.2213967.+	chr11	2213967	2213968	+	0	NA	Intergenic	Intergenic	19674	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr9.15605540.-	chr9	15605540	15605541	-	0	NA	"intron (NM_173550, intron 6 of 25)"	AluSc8|SINE|Alu	-52443	NM_173550	203238	Hs.17267	NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
chr2.184300369.+	chr2	184300369	184300370	+	0	NA	Intergenic	AluY|SINE|Alu	311286	NM_138285	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP44|NP44|NUP53	nucleoporin 35kDa	protein-coding
chr21.25064117.-	chr21	25064117	25064118	-	0	NA	Intergenic	AluY|SINE|Alu	306961	NR_040254	266917	Hs.145622	NR_040254	ENSG00000228592	D21S2088E	-	D21S2088E	miscRNA
chr16.48657309.+	chr16	48657309	48657310	+	0	NA	Intergenic	Intergenic	-13189	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
chr3.96533172.-	chr3	96533172	96533173	-	0	NA	promoter-TSS (NM_001080448)	promoter-TSS (NM_001080448)	253	NM_001080448	285220	Hs.653244	NM_001080448	ENSG00000080224	EPHA6	EK12|EPA6|PRO57066	EPH receptor A6	protein-coding
chr12.6489582.+	chr12	6489582	6489583	+	0	NA	"intron (NM_001270987, intron 1 of 9)"	AluSz6|SINE|Alu	-3059	NM_001159575	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	"sodium channel, non-voltage-gated 1 alpha subunit"	protein-coding
chr5.179167560.+	chr5	179167560	179167561	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	7709	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr16.6070453.+	chr16	6070453	6070454	+	0	NA	"intron (NM_001142333, intron 1 of 14)"	"intron (NM_001142333, intron 1 of 14)"	1321	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr1.40073721.-	chr1	40073721	40073722	-	0	NA	Intergenic	AluY|SINE|Alu	31200	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr11.64774833.+	chr11	64774833	64774834	+	0	NA	Intergenic	AluSz|SINE|Alu	-6752	NM_001667	402	Hs.502836	NM_001199745	ENSG00000213465	ARL2	ARFL2	ADP-ribosylation factor-like 2	protein-coding
chr4.106031846.+	chr4	106031846	106031847	+	0	NA	Intergenic	SVA_E|Other|Other	-35186	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chr17.18755207.-	chr17	18755207	18755208	-	0	NA	Intergenic	AluSx|SINE|Alu	4405	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr16.4537731.-	chr16	4537731	4537732	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8128	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr2.158052720.+	chr2	158052720	158052721	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61620	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr18.20879342.+	chr18	20879342	20879343	+	0	NA	"intron (NM_032933, intron 14 of 14)"	L3|LINE|CR1	138583	NM_032933	85019	Hs.137562	NM_032933	ENSG00000134490	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
chr6.100983468.-	chr6	100983468	100983469	-	0	NA	"intron (NM_006828, intron 37 of 41)"	AluSg7|SINE|Alu	71917	NM_005068	6492	Hs.520293	NM_005068	ENSG00000112246	SIM1	bHLHe14	single-minded homolog 1 (Drosophila)	protein-coding
chr15.89714249.-	chr15	89714249	89714250	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50673	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chrX.69569456.-	chrX	69569456	69569457	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59577	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr3.172180216.+	chr3	172180216	172180217	+	0	NA	Intergenic	AluY|SINE|Alu	-13970	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr3.46792397.+	chr3	46792397	46792398	+	0	NA	Intergenic	CpG	-6152	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr12.34191962.+	chr12	34191962	34191963	+	0	NA	Intergenic	AluSp|SINE|Alu	16746	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr8.60674624.-	chr8	60674624	60674625	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519330	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chrX.153736338.+	chrX	153736338	153736339	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8228	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr6.26522012.-	chr6	26522012	26522013	-	0	NA	promoter-TSS (NR_026790)	promoter-TSS (NR_026790)	-78	NR_026790	493812	Hs.272939	NR_026790	ENSG00000228223	HCG11	bK14H9.3	HLA complex group 11 (non-protein coding)	miscRNA
chr16.68158311.+	chr16	68158311	68158312	+	0	NA	"intron (NM_004555, intron 2 of 10)"	AluJo|SINE|Alu	39042	NM_004555	4775	Hs.436585	NM_004555	ENSG00000072736	NFATC3	NFAT4|NFATX	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3"	protein-coding
chr7.74447123.+	chr7	74447123	74447124	+	0	NA	Intergenic	AluSx1|SINE|Alu	42576	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr15.91370879.+	chr15	91370879	91370880	+	0	NA	Intergenic	AluSz|SINE|Alu	-41006	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr17.78199820.-	chr17	78199820	78199821	-	0	NA	"intron (NM_173626, intron 6 of 17)"	MER5A1|DNA|hAT-Charlie	-5620	NM_001166347	284129	Hs.4866	NM_001166347	ENSG00000181045	SLC26A11	-	"solute carrier family 26, member 11"	protein-coding
chr12.70332601.-	chr12	70332601	70332602	-	0	NA	Intergenic	L1PA3|LINE|L1	-159847	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
chr2.240383724.-	chr2	240383724	240383725	-	0	NA	Intergenic	Intergenic	61081	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr22.50655068.-	chr22	50655068	50655069	-	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	-15660	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr1.25671677.-	chr1	25671677	25671678	-	0	NA	"intron (NM_014313, intron 3 of 6)"	AluSx|SINE|Alu	-6888	NM_014313	23585	Hs.705699	NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
chrX.46794137.+	chrX	46794137	46794138	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22269	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr6.57322624.-	chr6	57322624	57322625	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140202	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr4.177146946.+	chr4	177146946	177146947	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30124	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr10.59080721.-	chr10	59080721	59080722	-	0	NA	Intergenic	AluY|SINE|Alu	16402	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr9.842213.-	chr9	842213	842214	-	0	NA	"intron (NM_021951, intron 1 of 4)"	CpG	-523	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr8.143484562.+	chr8	143484562	143484563	+	0	NA	promoter-TSS (NM_145003)	promoter-TSS (NM_145003)	-19	NM_145003	203062	Hs.370931	NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
chr2.121425300.-	chr2	121425300	121425301	-	0	NA	Intergenic	AluY|SINE|Alu	129567	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr5.31921541.+	chr5	31921541	31921542	+	0	NA	"intron (NM_178140, intron 1 of 23)"	AluJb|SINE|Alu	14724	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	miscRNA
chr1.24007007.+	chr1	24007007	24007008	+	0	NA	Intergenic	AluY|SINE|Alu	-11262	NM_000975	6135	Hs.719951	NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11	ribosomal protein L11	protein-coding
chr3.128161126.-	chr3	128161126	128161127	-	0	NA	Intergenic	Intergenic	21311	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr7.5703156.+	chr7	5703156	5703157	+	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	16936	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr4.129528873.-	chr4	129528873	129528874	-	0	NA	Intergenic	AluSx3|SINE|Alu	201906	NM_199320	79960	Hs.12420	NM_024900	ENSG00000077684	PHF17	JADE1	PHD finger protein 17	protein-coding
chrX.53111642.-	chrX	53111642	53111643	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-100	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.150600859.+	chr7	150600859	150600860	+	0	NA	Intergenic	Intergenic	51294	NM_001091	26	Hs.647097	NM_001091	ENSG00000002726	ABP1	ABP|AOC1|DAO|DAO1|KAO	amiloride binding protein 1 (amine oxidase (copper-containing))	protein-coding
chr20.61425556.+	chr20	61425556	61425557	+	0	NA	Intergenic	MIRc|SINE|MIR	-2249	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr12.131551516.-	chr12	131551516	131551517	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98040	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr3.47744715.+	chr3	47744715	47744716	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78690	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr1.32122076.-	chr1	32122076	32122077	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11238	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr16.81282917.-	chr16	81282917	81282918	-	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	-10621	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr18.77627567.-	chr18	77627567	77627568	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3899	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chrX.70362627.+	chrX	70362627	70362628	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-2054	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr10.12405376.+	chr10	12405376	12405377	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13793	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr1.65532983.-	chr1	65532983	65532984	-	0	NA	Intergenic	CpG	8792	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr2.136760880.+	chr2	136760880	136760881	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17658	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr20.5213543.+	chr20	5213543	5213544	+	0	NA	Intergenic	AluJr4|SINE|Alu	81472	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr19.4612713.-	chr19	4612713	4612714	-	0	NA	Intergenic	AluY|SINE|Alu	26814	NM_152362	126282	Hs.465643	NM_001167942	ENSG00000185361	TNFAIP8L1	TIPE1	"tumor necrosis factor, alpha-induced protein 8-like 1"	protein-coding
chr14.97183961.+	chr14	97183961	97183962	+	0	NA	Intergenic	AluY|SINE|Alu	-79723	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr6.90587948.-	chr6	90587948	90587949	-	0	NA	Intergenic	AluY|SINE|Alu	16240	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62|RP11-63K6.6	"gap junction protein, alpha 10, 62kDa"	protein-coding
chr15.63229212.-	chr15	63229212	63229213	-	0	NA	Intergenic	AluSp|SINE|Alu	105626	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr9.425341.+	chr9	425341	425342	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44953	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr3.9429751.-	chr3	9429751	9429752	-	0	NA	TTS (NR_027007)	TTS (NR_027007)	-9423	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr2.204121228.-	chr2	204121228	204121229	-	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	-18064	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr9.88491234.-	chr9	88491234	88491235	-	0	NA	Intergenic	AluYc|SINE|Alu	64823	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr6.8000132.+	chr6	8000132	8000133	+	0	NA	"intron (NR_037616, intron 4 of 12)"	AluSc8|SINE|Alu	13797	NR_027712	206426	Hs.676966	NR_027712		PIP5K1P1	-	"phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1"	pseudo
chr15.37172806.+	chr15	37172806	37172807	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5928	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr6.34770170.+	chr6	34770170	34770171	+	0	NA	"intron (NM_017754, intron 1 of 20)"	AluSx1|SINE|Alu	10376	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr20.62657594.+	chr20	62657594	62657595	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8103	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr10.1212980.+	chr10	1212980	1212981	+	0	NA	Intergenic	Intergenic	7272	NR_015376	399706	Hs.721191	NR_015376	ENSG00000229205	LINC00200	C10orf139|NCRNA00200|RP11-529L18.1	long intergenic non-protein coding RNA 200	miscRNA
chr5.17207866.+	chr5	17207866	17207867	+	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	-9066	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr16.3755327.+	chr16	3755327	3755328	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12271	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr5.24116786.-	chr5	24116786	24116787	-	0	NA	Intergenic	AluY|SINE|Alu	-528299	NM_006727	1008	Hs.92489	NM_006727	ENSG00000040731	CDH10	-	"cadherin 10, type 2 (T2-cadherin)"	protein-coding
chr7.53196202.-	chr7	53196202	53196203	-	0	NA	Intergenic	AluY|SINE|Alu	-92853	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr18.34900237.-	chr18	34900237	34900238	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	AluY|SINE|Alu	-245763	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr2.106015653.+	chr2	106015653	106015654	+	0	NA	promoter-TSS (NM_001450)	promoter-TSS (NM_001450)	28	NM_201555	2274	Hs.443687	NM_001039492	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
chr1.54839951.-	chr1	54839951	54839952	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32028	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr21.20831259.+	chr21	20831259	20831260	+	0	NA	Intergenic	AluYf4|SINE|Alu	-1055289	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chr19.14508474.-	chr19	14508474	14508475	-	0	NA	"exon (NM_078481, exon 7 of 20)"	"exon (NM_078481, exon 7 of 20)"	-16518	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr2.38835400.+	chr2	38835400	38835401	+	0	NA	Intergenic	AluY|SINE|Alu	-5222	NM_001142650	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr3.164119712.-	chr3	164119712	164119713	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676571	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr17.74632750.-	chr17	74632750	74632751	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7144	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr9.131639087.+	chr9	131639087	131639088	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5267	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr16.1349285.+	chr16	1349285	1349286	+	0	NA	Intergenic	Intergenic	-9869	NM_194260	7329	Hs.302903	NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin-conjugating enzyme E2I	protein-coding
chrX.7012490.+	chrX	7012490	7012491	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53411	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr16.4944515.-	chr16	4944515	4944516	-	0	NA	"exon (NM_002705, exon 12 of 22)"	"exon (NM_002705, exon 12 of 22)"	-42438	NM_016936	29855	Hs.440219	NM_001079514	ENSG00000118900	UBN1	VT|VT4	ubinuclein 1	protein-coding
chr22.46504436.-	chr22	46504436	46504437	-	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	4193	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr3.13105250.+	chr3	13105250	13105251	+	0	NA	"intron (NM_001134382, intron 1 of 14)"	"intron (NM_001134382, intron 1 of 14)"	9367	NM_001134382	9922	Hs.475506	NM_001134382	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
chr17.37768986.-	chr17	37768986	37768987	-	0	NA	Intergenic	Intergenic	4811	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr11.68671242.+	chr11	68671242	68671243	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	61	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr3.188566640.+	chr3	188566640	188566641	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323123	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr15.90792653.-	chr15	90792653	90792654	-	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	111	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr17.26336738.+	chr17	26336738	26336739	+	0	NA	Intergenic	AluSz|SINE|Alu	-32950	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr18.33543827.+	chr18	33543827	33543828	+	0	NA	Intergenic	AluY|SINE|Alu	-8761	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr6.24720961.-	chr6	24720961	24720962	-	0	NA	Intergenic	CpG	1558	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr19.46380462.+	chr19	46380462	46380463	+	0	NA	Intergenic	Intergenic	8914	NM_015649	26145	Hs.515477	NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
chr19.3644467.-	chr19	3644467	3644468	-	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	17654	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr1.8021852.+	chr1	8021852	8021853	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	138	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr6.31211939.+	chr6	31211939	31211940	+	0	NA	Intergenic	SVA_F|Other|Other	27974	NM_001243042	3107	Hs.743218	NM_001243042	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLC-C|PSORS1	"major histocompatibility complex, class I, C"	protein-coding
chr5.145549245.-	chr5	145549245	145549246	-	0	NA	"intron (NM_020117, intron 4 of 31)"	AluSq2|SINE|Alu	-13049	NM_020117	51520	Hs.432674	NM_020117	ENSG00000133706	LARS	HSPC192|LARS1|LEURS|LEUS|LRS|PIG44|RNTLS|hr025Cl	leucyl-tRNA synthetase	protein-coding
chr9.77401565.-	chr9	77401565	77401566	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100698	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr16.1332175.-	chr16	1332175	1332176	-	0	NA	Intergenic	AluSx|SINE|Alu	-25902	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr15.89219696.-	chr15	89219696	89219697	-	0	NA	Intergenic	AluSx|SINE|Alu	-37657	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
chr21.43198236.-	chr21	43198236	43198237	-	0	NA	Intergenic	Intergenic	10987	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr16.68573290.-	chr16	68573290	68573291	-	0	NA	promoter-TSS (NM_133458)	promoter-TSS (NM_133458)	371	NM_133458	146198	Hs.709017	NM_133458	ENSG00000184939	ZFP90	NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
chr7.26216463.-	chr7	26216463	26216464	-	0	NA	"intron (NM_004289, intron 1 of 3)"	SVA_A|Other|Other	-23950	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
chr8.14459354.-	chr8	14459354	14459355	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251665	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr11.130063506.+	chr11	130063506	130063507	+	0	NA	"intron (NM_021978, intron 7 of 18)"	AluSx|SINE|Alu	33824	NM_021978	6768	Hs.504315	NM_021978	ENSG00000149418	ST14	HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding
chr2.32250712.+	chr2	32250712	32250713	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14132	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr7.53587036.+	chr7	53587036	53587037	+	0	NA	Intergenic	AluY|SINE|Alu	292588	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr16.70148615.+	chr16	70148615	70148616	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1086	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr8.21944478.-	chr8	21944478	21944479	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2236	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chr19.45678448.-	chr19	45678448	45678449	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3053	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr13.113676378.+	chr13	113676378	113676379	+	0	NA	"intron (NM_001112732, intron 2 of 29)"	"intron (NM_001112732, intron 2 of 29)"	20350	NM_024979	23263	Hs.170422	NM_001112732	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence-like	protein-coding
chr19.33557637.+	chr19	33557637	33557638	+	0	NA	Intergenic	Intergenic	-1813	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr6.163113510.-	chr6	163113510	163113511	-	0	NA	"intron (NM_004562, intron 1 of 11)"	MER77|LTR|ERVL	34654	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr9.136039478.+	chr9	136039478	136039479	+	0	NA	promoter-TSS (NM_021996)	promoter-TSS (NM_021996)	-177	NM_021996	26301	Hs.495419	NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	"globoside alpha-1,3-N-acetylgalactosaminyltransferase 1"	protein-coding
chr16.67519972.+	chr16	67519972	67519973	+	0	NA	Intergenic	AluY|SINE|Alu	-2256	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr8.68572724.-	chr8	68572724	68572725	-	0	NA	"intron (NM_020361, intron 1 of 10)"	AluJb|SINE|Alu	-85896	NM_020361	57094	Hs.658850	NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
chr18.34900224.-	chr18	34900224	34900225	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	AluY|SINE|Alu	-245776	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr16.49704628.+	chr16	49704628	49704629	+	0	NA	"intron (NM_001271620, intron 3 of 7)"	"intron (NM_001271620, intron 3 of 7)"	152021	NM_015069	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr9.8857464.-	chr9	8857464	8857465	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123518	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr19.58810621.+	chr19	58810621	58810622	+	0	NA	Intergenic	AluY|SINE|Alu	20303	NM_021089	7554	Hs.713519	NM_021089	ENSG00000083842	ZNF8	HF.18|Zfp128	zinc finger protein 8	protein-coding
chr9.92792315.+	chr9	92792315	92792316	+	0	NA	"intron (NR_038882, intron 2 of 3)"	MIR|SINE|MIR	-6498	NR_036253	100422963		NR_036253	ENSG00000263967	MIR4290	-	microRNA 4290	miscRNA
chr3.128194217.-	chr3	128194217	128194218	-	0	NA	Intergenic	Intergenic	8126	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr3.93689461.-	chr3	93689461	93689462	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3473	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr19.34394407.-	chr19	34394407	34394408	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106656	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr9.38829826.+	chr9	38829826	38829827	+	0	NA	Intergenic	AluY|SINE|Alu	208741	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr13.77954592.+	chr13	77954592	77954593	+	0	NA	Intergenic	AluSc|SINE|Alu	-53415	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr9.90559100.-	chr9	90559100	90559101	-	0	NA	Intergenic	Intergenic	-26223	NM_001145124	441452	Hs.652956	NM_001145124		SPATA31C1	FAM75C1|SPATA31C2	"SPATA31 subfamily C, member 1"	protein-coding
chr19.33557615.+	chr19	33557615	33557616	+	0	NA	Intergenic	Intergenic	-1791	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr1.151199114.+	chr1	151199114	151199115	+	0	NA	"intron (NM_001135638, intron 3 of 15)"	AluSq2|SINE|Alu	-28083	NM_002810	5710	Hs.505059	NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 4"	protein-coding
chr19.13354949.-	chr19	13354949	13354950	-	0	NA	"intron (NM_023035, intron 31 of 46)"	LTR33|LTR|ERVL	-93667	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr9.140165619.-	chr9	140165619	140165620	-	0	NA	"intron (NM_015456, intron 10 of 12)"	"intron (NM_015456, intron 10 of 12)"	6661	NM_017723	54863	Hs.495541	NM_017723	ENSG00000198113	TOR4A	C9orf167	"torsin family 4, member A"	protein-coding
chr22.38336362.+	chr22	38336362	38336363	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13292	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr15.62456150.+	chr15	62456150	62456151	+	0	NA	"exon (NM_001007595, exon 2 of 2)"	"exon (NM_001007595, exon 2 of 2)"	1332	NM_001007595	388125	Hs.144372	NM_001007595	ENSG00000205502	C2CD4B	FAM148B|NLF2	C2 calcium-dependent domain containing 4B	protein-coding
chr7.821276.+	chr7	821276	821277	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33918	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr2.113965287.+	chr2	113965287	113965288	+	0	NA	Intergenic	AluY|SINE|Alu	-27817	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr19.40938979.+	chr19	40938979	40938980	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7047	NM_013376	29950	Hs.269898	NM_013376		SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding
chr17.40536616.+	chr17	40536616	40536617	+	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	3789	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr20.60888692.+	chr20	60888692	60888693	+	0	NA	"intron (NM_005560, intron 63 of 79)"	"intron (NM_005560, intron 63 of 79)"	10665	NM_007002	11047	Hs.90107	NM_007002	ENSG00000130706	ADRM1	ARM1|GP110|Rpn13	adhesion regulating molecule 1	protein-coding
chr17.78559355.+	chr17	78559355	78559356	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40730	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr4.40654847.+	chr4	40654847	40654848	+	0	NA	Intergenic	AluSp|SINE|Alu	-22964	NM_001098634	54502	Hs.518727	NM_001098634	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
chr14.23517083.-	chr14	23517083	23517084	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5707	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr7.158218557.-	chr7	158218557	158218558	-	0	NA	"intron (NM_130842, intron 1 of 21)"	CpG	-106948	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr1.186364389.+	chr1	186364389	186364390	+	0	NA	"intron (NM_001164246, intron 8 of 12)"	AluY|SINE|Alu	-5315	NM_022375	10896	Hs.679230	NM_022375	ENSG00000262180	OCLM	TISR	oculomedin	protein-coding
chr5.157292448.-	chr5	157292448	157292449	-	0	NA	Intergenic	AluY|SINE|Alu	6265	NM_001195555	9685	Hs.644000	NM_001195555	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
chrY.9930607.-	chrY	9930607	9930608	-	0	NA	Intergenic	Intergenic	-182200	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr6.46742395.-	chr6	46742395	46742396	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18699	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr14.105736142.+	chr14	105736142	105736143	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20401	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr15.90776698.-	chr15	90776698	90776699	-	0	NA	promoter-TSS (NM_001013657)	promoter-TSS (NM_001013657)	-581	NM_006384	10519	Hs.715556	NM_006384		CIB1	CIB|KIP|KIP1|SIP2-28	calcium and integrin binding 1 (calmyrin)	protein-coding
chr3.178772607.-	chr3	178772607	178772608	-	0	NA	"intron (NM_152240, intron 3 of 6)"	LTR17|LTR|ERV1	-17049	NM_152240	64393	Hs.371609	NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	"zinc finger, matrin-type 3"	protein-coding
chr6.167607719.-	chr6	167607719	167607720	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23638	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr1.160239899.-	chr1	160239899	160239900	-	0	NA	Intergenic	AluJo|SINE|Alu	7549	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr10.7626522.+	chr10	7626522	7626523	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35114	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr21.47748701.-	chr21	47748701	47748702	-	0	NA	"intron (NM_006031, intron 2 of 46)"	AluSg|SINE|Alu	-4665	NM_006031	5116	Hs.474069	NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
chr16.17617293.-	chr16	17617293	17617294	-	0	NA	Intergenic	AluSz|SINE|Alu	52555	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr16.67682707.-	chr16	67682707	67682708	-	0	NA	"intron (NM_001013838, intron 16 of 37)"	CpG-9413	-3677	NM_001013838	146206	Hs.611432	NM_001013838	ENSG00000159753	RLTPR	CARMIL2|CARMIL2b|LRRC16C	"RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing"	protein-coding
chr19.44489480.+	chr19	44489480	44489481	+	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	1158	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr2.121994380.-	chr2	121994380	121994381	-	0	NA	"intron (NM_014553, intron 10 of 14)"	"intron (NM_014553, intron 10 of 14)"	-48398	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
chr1.32958192.+	chr1	32958192	32958193	+	0	NA	Intergenic	AluSq|SINE|Alu	27534	NM_001145720	728116	Hs.647658	NM_001145720	ENSG00000215897	ZBTB8B	RP1-27O5.1|ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
chr16.77246802.-	chr16	77246802	77246803	-	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	-13453	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr6.7910524.-	chr6	7910524	7910525	-	0	NA	promoter-TSS (NM_001145549)	promoter-TSS (NM_001145549)	214	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr1.153574070.-	chr1	153574070	153574071	-	0	NA	Intergenic	AluY|SINE|Alu	-11444	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr19.14508401.-	chr19	14508401	14508402	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16445	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr17.67639039.+	chr17	67639039	67639040	+	0	NA	Intergenic	AluY|SINE|Alu	228201	NM_002758	5608	Hs.463978	NM_002758		MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chr17.79611166.+	chr17	79611166	79611167	+	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	1817	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr6.33811457.+	chr6	33811457	33811458	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39664	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr19.37464080.+	chr19	37464080	37464081	+	0	NA	"intron (NM_001204838, intron 6 of 9)"	CpG	56849	NM_001204836	374900	Hs.733385	NM_001204835	ENSG00000198453	ZNF568	-	zinc finger protein 568	protein-coding
chr1.228733845.-	chr1	228733845	228733846	-	0	NA	Intergenic	HSAT4|Satellite|centr	46549	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr20.4100841.-	chr20	4100841	4100842	-	0	NA	Intergenic	AluSc|SINE|Alu	28585	NM_175840	54498	Hs.433337	NM_001270691	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAOH1|SMO	spermine oxidase	protein-coding
chr16.75395276.-	chr16	75395276	75395277	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluSz|SINE|Alu	-72111	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
chr6.42476454.-	chr6	42476454	42476455	-	0	NA	Intergenic	AluY|SINE|Alu	55306	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr7.61969344.+	chr7	61969344	61969345	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795090	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr16.1228084.+	chr16	1228084	1228085	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24843	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr7.1592406.-	chr7	1592406	1592407	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	-3660	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr2.128965903.+	chr2	128965903	128965904	+	0	NA	Intergenic	SVA_F|Other|Other	110268	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr7.45775950.-	chr7	45775950	45775951	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32667	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr11.107701193.+	chr11	107701193	107701194	+	0	NA	"intron (NM_017515, intron 1 of 7)"	AluY|SINE|Alu	28721	NM_017515	54733	Hs.524014	NM_017515	ENSG00000110660	SLC35F2	HSNOV1	"solute carrier family 35, member F2"	protein-coding
chr7.1474629.+	chr7	1474629	1474630	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24480	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr2.29662836.+	chr2	29662836	29662837	+	0	NA	"intron (NM_004304, intron 4 of 28)"	AluSx1|SINE|Alu	324528	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr3.195603741.-	chr3	195603741	195603742	-	0	NA	"intron (NM_001010938, intron 9 of 14)"	"intron (NM_001010938, intron 9 of 14)"	-18691	NM_001010938	10188	Hs.518513	NM_001010938	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	"tyrosine kinase, non-receptor, 2"	protein-coding
chr11.2213980.-	chr11	2213980	2213981	-	0	NA	Intergenic	Intergenic	-19687	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr2.227662425.+	chr2	227662425	227662426	+	0	NA	"exon (NM_005544, exon 1 of 2)"	"exon (NM_005544, exon 1 of 2)"	1081	NM_005544	3667	Hs.471508	NM_005544		IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
chr19.2340022.-	chr19	2340022	2340023	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11393	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr1.28967756.-	chr1	28967756	28967757	-	0	NA	"intron (NM_005644, intron 1 of 5)"	AluSz6|SINE|Alu	-1848	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chr12.124457692.-	chr12	124457692	124457693	-	0	NA	promoter-TSS (NM_152437)	promoter-TSS (NM_152437)	70	NM_001204298	144348	Hs.524828	NM_001204298	ENSG00000179195	ZNF664	ZFOC1|ZNF176	zinc finger protein 664	protein-coding
chr16.50875272.-	chr16	50875272	50875273	-	0	NA	Intergenic	CpG	-99243	NM_001042412	1540	Hs.578973	NM_001042355	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2	cylindromatosis (turban tumor syndrome)	protein-coding
chr22.20472033.-	chr22	20472033	20472034	-	0	NA	Intergenic	AluY|SINE|Alu	10247	NM_015672	85376	Hs.115429	NM_015672	ENSG00000196622	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
chr7.1474627.+	chr7	1474627	1474628	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24482	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr14.83280564.-	chr14	83280564	83280565	-	0	NA	Intergenic	SVA_D|Other|Other	1280359	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr6.45365114.-	chr6	45365114	45365115	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19326	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr19.16625532.-	chr19	16625532	16625533	-	0	NA	"intron (NM_032207, intron 7 of 8)"	"intron (NM_032207, intron 7 of 8)"	-18327	NM_032207	84167	Hs.631627	NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
chr1.11960062.+	chr1	11960062	11960063	+	0	NA	Intergenic	AluSc8|SINE|Alu	26423	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
chr2.68675736.-	chr2	68675736	68675737	-	0	NA	Intergenic	Intergenic	-18654	NM_001024680	554251	Hs.164117	NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
chr16.28874245.+	chr16	28874245	28874246	+	0	NA	promoter-TSS (NM_001145796)	promoter-TSS (NM_001145796)	-833	NM_001145795	25970	Hs.15744	NM_001145795	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
chr4.3435936.-	chr4	3435936	3435937	-	0	NA	"intron (NM_198227, intron 15 of 15)"	THE1D|LTR|ERVL-MaLR	7790	NM_001528	3083	Hs.104	NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
chr21.43198293.-	chr21	43198293	43198294	-	0	NA	Intergenic	Intergenic	11044	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr19.54256027.+	chr19	54256027	54256028	+	0	NA	TTS (NR_030218)	TTS (NR_030218)	376	NR_030218	574496		NR_030218	ENSG00000207992	MIR519A1	MIRN519A-1|MIRN519A1	microRNA 519a-1	miscRNA
chr11.93394827.+	chr11	93394827	93394828	+	0	NA	promoter-TSS (NM_033395)	promoter-TSS (NM_033395)	11	NM_033395	85459	Hs.458418	NM_033395	ENSG00000166004	KIAA1731	-	KIAA1731	protein-coding
chr6.114067516.-	chr6	114067516	114067517	-	0	NA	Intergenic	AluY|SINE|Alu	111011	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr5.179333998.+	chr5	179333998	179333999	+	0	NA	"intron (NM_198868, intron 1 of 21)"	"intron (NM_198868, intron 1 of 21)"	858	NM_198868	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr8.67454348.-	chr8	67454348	67454349	-	0	NA	Intergenic	Intergenic	-48857	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr16.53165444.-	chr16	53165444	53165445	-	0	NA	"intron (NM_025134, intron 1 of 38)"	CpG	-76499	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr3.50378611.+	chr3	50378611	50378612	+	0	NA	promoter-TSS (NM_001206957)	promoter-TSS (NM_001206957)	-244	NM_170714	11186	Hs.476270	NM_001206957	ENSG00000068028	RASSF1	123F2|NORE2A|RASSF1A|RDA32|REH3P21	Ras association (RalGDS/AF-6) domain family member 1	protein-coding
chr15.90327990.+	chr15	90327990	90327991	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8401	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr3.170641241.+	chr3	170641241	170641242	+	0	NA	Intergenic	SVA_C|Other|Other	-14815	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr9.139466669.-	chr9	139466669	139466670	-	0	NA	Intergenic	Intergenic	25958	NR_039821	100616301		NR_039821	ENSG00000265181	MIR4674	-	microRNA 4674	miscRNA
chr3.88595801.-	chr3	88595801	88595802	-	0	NA	Intergenic	AluSg|SINE|Alu	396785	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr4.134408767.-	chr4	134408767	134408768	-	0	NA	Intergenic	AluY|SINE|Alu	-338297	NM_020815	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr3.1144634.-	chr3	1144634	1144635	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-10005	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr22.50655079.+	chr22	50655079	50655080	+	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	15671	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr17.78447068.+	chr17	78447068	78447069	+	0	NA	"exon (NM_002522, exon 3 of 5)"	"exon (NM_002522, exon 3 of 5)"	3336	NM_002522	4884	Hs.715784	NM_002522	ENSG00000171246	NPTX1	NP1	neuronal pentraxin I	protein-coding
chr1.24513597.-	chr1	24513597	24513598	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-168	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr4.1995613.+	chr4	1995613	1995614	+	0	NA	"intron (NM_005663, intron 1 of 10)"	AluSq2|SINE|Alu	-7409	NR_030641	100126332		NR_030641		MIR943	MIRN943|hsa-mir-943	microRNA 943	miscRNA
chr4.5892161.-	chr4	5892161	5892162	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1846	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr22.46522755.-	chr22	46522755	46522756	-	0	NA	Intergenic	Intergenic	-13189	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr19.5948198.+	chr19	5948198	5948199	+	0	NA	"intron (NM_007320, intron 2 of 15)"	AluY|SINE|Alu	30122	NM_003624	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
chr8.26241070.-	chr8	26241070	26241071	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-547	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr16.723791.+	chr16	723791	723792	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2284	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr4.103422424.-	chr4	103422424	103422425	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	62	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr1.99544259.-	chr1	99544259	99544260	-	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	73810	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr3.15431338.+	chr3	15431338	15431339	+	0	NA	Intergenic	AluSp|SINE|Alu	37704	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr3.158905798.-	chr3	158905798	158905799	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	"intron (NM_001197114, intron 1 of 9)"	85238	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr14.23517047.+	chr14	23517047	23517048	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5671	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr2.219432885.+	chr2	219432885	219432886	+	0	NA	promoter-TSS (NM_005444)	promoter-TSS (NM_005444)	199	NM_020935	57695	Hs.166068	NM_020935	ENSG00000135913	USP37	-	ubiquitin specific peptidase 37	protein-coding
chr9.88491243.+	chr9	88491243	88491244	+	0	NA	Intergenic	AluYc|SINE|Alu	-64814	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr20.34266412.+	chr20	34266412	34266413	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13534	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chrX.12751745.+	chrX	12751745	12751746	+	0	NA	Intergenic	AluY|SINE|Alu	-57729	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr12.25348254.-	chr12	25348254	25348255	-	0	NA	promoter-TSS (NM_001082973)	promoter-TSS (NM_001082973)	-104	NM_001001660	144363	Hs.209151	NM_001001660	ENSG00000205707	LYRM5	-	LYR motif containing 5	protein-coding
chr1.3083919.+	chr1	3083919	3083920	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	39380	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr1.24513608.+	chr1	24513608	24513609	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	157	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr3.38106452.-	chr3	38106452	38106453	-	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	-25756	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr7.1570440.-	chr7	1570440	1570441	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-72	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr8.44697.-	chr8	44697	44698	-	0	NA	Intergenic	Intergenic	-72327	NM_001005504	441308	Hs.690459	NM_001005504		OR4F21	OR4F21P	"olfactory receptor, family 4, subfamily F, member 21"	protein-coding
chr18.10581559.+	chr18	10581559	10581560	+	0	NA	Intergenic	AluSq2|SINE|Alu	55686	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr18.11959852.+	chr18	11959852	11959853	+	0	NA	Intergenic	SVA_D|Other|Other	-21575	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr13.113548939.+	chr13	113548939	113548940	+	0	NA	Intergenic	CpG	74013	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	miscRNA
chr15.53079988.-	chr15	53079988	53079989	-	0	NA	"intron (NM_004498, intron 1 of 1)"	"intron (NM_004498, intron 1 of 1)"	-2221	NM_004498	3175	Hs.658573	NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
chr16.85512906.-	chr16	85512906	85512907	-	0	NA	Intergenic	AluY|SINE|Alu	132123	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr3.87832559.+	chr3	87832559	87832560	+	0	NA	Intergenic	AluYk4|SINE|Alu	-199167	NM_000866	3355	Hs.248136	NM_000866		HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	"5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled"	protein-coding
chr2.240383650.-	chr2	240383650	240383651	-	0	NA	Intergenic	Intergenic	61007	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.115819045.+	chr9	115819045	115819046	+	0	NA	promoter-TSS (NM_003408)	promoter-TSS (NM_003408)	-49	NM_003408	7539	Hs.150406	NM_003408	ENSG00000136866	ZFP37	ZNF906	ZFP37 zinc finger protein	protein-coding
chr10.103852109.+	chr10	103852109	103852110	+	0	NA	Intergenic	AluSc|SINE|Alu	22614	NM_003893	8861	Hs.454418	NM_001113407	ENSG00000198728	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
chr7.1542280.+	chr7	1542280	1542281	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1738	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr2.55647020.+	chr2	55647020	55647021	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	37	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr9.133430125.+	chr9	133430125	133430126	+	0	NA	Intergenic	Intergenic	24756	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr3.189635236.-	chr3	189635236	189635237	-	0	NA	Intergenic	AluSz6|SINE|Alu	-87525	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	miscRNA
chr1.55089178.-	chr1	55089178	55089179	-	0	NA	promoter-TSS (NM_176782)	promoter-TSS (NM_176782)	-22	NM_176782	338094	Hs.741434	NM_176782	ENSG00000162391	FAM151A	C1orf179	"family with sequence similarity 151, member A"	protein-coding
chr2.237068272.-	chr2	237068272	237068273	-	0	NA	Intergenic	CpG	-8380	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr1.55483736.-	chr1	55483736	55483737	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19119	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr1.115936713.+	chr1	115936713	115936714	+	0	NA	Intergenic	AluYc|SINE|Alu	-55856	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
chr4.76311994.-	chr4	76311994	76311995	-	0	NA	Intergenic	AluSq|SINE|Alu	-32708	NR_033964	441025	Hs.407667	NR_033964	ENSG00000251383	LOC441025	-	uncharacterized LOC441025	miscRNA
chr1.21671979.+	chr1	21671979	21671980	+	0	NA	promoter-TSS (NM_001113348)	promoter-TSS (NM_001113348)	55	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr8.14882363.+	chr8	14882363	14882364	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171344	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr3.46792423.-	chr3	46792423	46792424	-	0	NA	Intergenic	CpG	6178	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr11.1595020.+	chr11	1595020	1595021	+	0	NA	"intron (NR_021489, intron 1 of 1)"	"intron (NR_021489, intron 1 of 1)"	1049	NR_021489	338651	Hs.673618	NR_021489	ENSG00000233930	LOC338651	-	uncharacterized LOC338651	miscRNA
chr19.2269832.+	chr19	2269832	2269833	+	0	NA	"intron (NM_004152, intron 1 of 4)"	CpG	312	NM_004152	4946	Hs.446427	NM_004152	ENSG00000104904	OAZ1	AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
chr12.49479717.+	chr12	49479717	49479718	+	0	NA	Intergenic	AluSq|SINE|Alu	8885	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chr11.66887557.-	chr11	66887557	66887558	-	0	NA	"intron (NM_012308, intron 1 of 20)"	"intron (NM_012308, intron 1 of 20)"	-817	NR_027473	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chrX.117288391.+	chrX	117288391	117288392	+	0	NA	Intergenic	AluSc8|SINE|Alu	-37088	NM_001168301	90293	Hs.348262	NM_001168299	ENSG00000003096	KLHL13	BKLHD2	kelch-like family member 13	protein-coding
chr10.59080712.+	chr10	59080712	59080713	+	0	NA	Intergenic	AluY|SINE|Alu	-16393	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr19.22949538.-	chr19	22949538	22949539	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	-17435	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr6.149069037.-	chr6	149069037	149069038	-	0	NA	"intron (NM_005715, intron 1 of 7)"	CpG	-766	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl-2-sulfotransferase	protein-coding
chr9.8857459.+	chr9	8857459	8857460	+	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	-123513	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr3.53118170.-	chr3	53118170	53118171	-	0	NA	Intergenic	Intergenic	38081	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr15.30396187.+	chr15	30396187	30396188	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	252	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr22.18131965.+	chr22	18131965	18131966	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6463	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr2.1554632.+	chr2	1554632	1554633	+	0	NA	Intergenic	Intergenic	136452	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr17.1702420.+	chr17	1702420	1702421	+	0	NA	"intron (NM_052928, intron 5 of 10)"	AluYc|SINE|Alu	30755	NM_052928	114826	Hs.514602	NM_052928	ENSG00000186532	SMYD4	ZMYND21	SET and MYND domain containing 4	protein-coding
chr20.14910699.-	chr20	14910699	14910700	-	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	538	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr5.31855125.+	chr5	31855125	31855126	+	0	NA	"intron (NM_178140, intron 1 of 23)"	CpG	56094	NM_178140	23037	Hs.481819	NM_178140	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
chr5.2007698.-	chr5	2007698	2007699	-	0	NA	Intergenic	CpG	124818	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr2.170687913.+	chr2	170687913	170687914	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3895	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr13.48030569.-	chr13	48030569	48030570	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544893	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr18.67270909.-	chr18	67270909	67270910	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202625	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr5.55541992.+	chr5	55541992	55541993	+	0	NA	Intergenic	AluJr|SINE|Alu	-12806	NM_024669	79722	Hs.436214	NM_001039935	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
chr9.108210432.-	chr9	108210432	108210433	-	0	NA	"5' UTR (NM_001145313, exon 1 of 14)"	"5' UTR (NM_001145313, exon 1 of 14)"	-107	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr16.31996216.+	chr16	31996216	31996217	+	0	NA	Intergenic	AluY|SINE|Alu	111137	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr9.130734383.-	chr9	130734383	130734384	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8429	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr1.32583057.+	chr1	32583057	32583058	+	0	NA	"intron (NM_012316, intron 1 of 13)"	AluSg4|SINE|Alu	9413	NM_012316	23633	Hs.711019	NM_012316	ENSG00000025800	KPNA6	IPOA7|KPNA7	karyopherin alpha 6 (importin alpha 7)	protein-coding
chr13.114888645.+	chr13	114888645	114888646	+	0	NA	"intron (NM_007368, intron 1 of 23)"	"intron (NM_007368, intron 1 of 23)"	9450	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr14.19890140.-	chr14	19890140	19890141	-	0	NA	Intergenic	CpG	4229	NR_073460	101101776	Hs.617315	NR_073460		LOC101101776	-	ribosome biogenesis protein BMS1 homolog pseudogene	pseudo
chr17.79611156.-	chr17	79611156	79611157	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1807	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr4.123063388.+	chr4	123063388	123063389	+	0	NA	Intergenic	AluSg7|SINE|Alu	-28370	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr2.183903198.+	chr2	183903198	183903199	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	31	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr3.48533715.+	chr3	48533715	48533716	+	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	7768	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr22.20783660.-	chr22	20783660	20783661	-	0	NA	"intron (NM_153334, intron 8 of 10)"	CpG-17560	-8486	NM_182895	91179	Hs.474251	NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	"scavenger receptor class F, member 2"	protein-coding
chr21.46405203.+	chr21	46405203	46405204	+	0	NA	Intergenic	Intergenic	8798	NR_033840	727699	Hs.397403	NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	miscRNA
chr17.72262229.+	chr17	72262229	72262230	+	0	NA	Intergenic	AluJb|SINE|Alu	-8157	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr4.1626824.+	chr4	1626824	1626825	+	0	NA	Intergenic	CpG	58894	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr5.57859588.+	chr5	57859588	57859589	+	0	NA	Intergenic	SVA_A|Other|Other	-19351	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr7.104040207.-	chr7	104040207	104040208	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71103	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr2.182756837.+	chr2	182756837	182756838	+	0	NA	"exon (NM_006751, exon 1 of 17)"	"exon (NM_006751, exon 1 of 17)"	365	NM_001130445	6744	Hs.196983	NM_001130445	ENSG00000138434	SSFA2	CS-1|CS1|KRAP|SPAG13	sperm specific antigen 2	protein-coding
chr5.150027573.+	chr5	150027573	150027574	+	0	NA	"exon (NM_001166209, exon 3 of 3)"	"exon (NM_001166209, exon 3 of 3)"	7366	NM_007286	11346	Hs.435228	NM_001109974	ENSG00000171992	SYNPO	-	synaptopodin	protein-coding
chrX.42145004.-	chrX	42145004	42145005	-	0	NA	Intergenic	SVA_D|Other|Other	362717	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr15.91599284.+	chr15	91599284	91599285	+	0	NA	Intergenic	Intergenic	-33451	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr16.3203697.-	chr16	3203697	3203698	-	0	NA	Intergenic	AluSg|SINE|Alu	-18563	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr10.134216472.-	chr10	134216472	134216473	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5770	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr7.99109402.-	chr7	99109402	99109403	-	0	NA	"intron (NM_145102, intron 2 of 6)"	L2c|LINE|L2	-6829	NM_014569	23660	Hs.110839	NM_014569	ENSG00000196652	ZKSCAN5	ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
chr7.99765900.-	chr7	99765900	99765901	-	0	NA	"intron (NM_024637, intron 1 of 3)"	"intron (NM_024637, intron 1 of 3)"	-473	NM_024637	79690	Hs.44856	NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
chr1.197234024.-	chr1	197234024	197234025	-	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	3310	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr17.81083460.-	chr17	81083460	81083461	-	0	NA	Intergenic	CpG	-45893	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr7.70011621.+	chr7	70011621	70011622	+	0	NA	"intron (NM_015570, intron 5 of 18)"	AluY|SINE|Alu	-585902	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr17.65843608.-	chr17	65843608	65843609	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21828	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr7.5626531.+	chr7	5626531	5626532	+	0	NA	Intergenic	Intergenic	-5905	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chrX.69569701.-	chrX	69569701	69569702	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59822	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr16.3208992.+	chr16	3208992	3208993	+	0	NA	Intergenic	CpG	23858	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr14.103988996.-	chr14	103988996	103988997	-	0	NA	"intron (NM_001823, intron 1 of 7)"	CpG-7449	-200	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chrM.803.+	chrM	803	804	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.224545150.+	chr1	224545150	224545151	+	0	NA	"intron (NR_102347, intron 1 of 3)"	CpG	637	NM_001277197	29097	Hs.445890	NM_001277197		CNIH4	-	cornichon homolog 4 (Drosophila)	protein-coding
chr13.31307187.+	chr13	31307187	31307188	+	0	NA	"intron (NM_001204406, intron 1 of 5)"	AluY|SINE|Alu	-2458	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
chr17.8252979.+	chr17	8252979	8252980	+	0	NA	Intergenic	AluSq2|SINE|Alu	9791	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr16.181446.-	chr16	181446	181447	-	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	-7251	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr12.132116756.+	chr12	132116756	132116757	+	0	NA	Intergenic	L1ME1|LINE|L1	-78876	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr7.121013937.-	chr7	121013937	121013938	-	0	NA	"intron (NM_001040020, intron 3 of 9)"	AluY|SINE|Alu	-22485	NM_014888	10447	Hs.434053	NM_001040020	ENSG00000196937	FAM3C	ILEI	"family with sequence similarity 3, member C"	protein-coding
chr6.42928592.+	chr6	42928592	42928593	+	0	NA	promoter-TSS (NM_018960)	promoter-TSS (NM_018960)	92	NM_018960	27232	Hs.144914	NM_018960	ENSG00000124713	GNMT	-	glycine N-methyltransferase	protein-coding
chr8.76968567.+	chr8	76968567	76968568	+	0	NA	Intergenic	AluY|SINE|Alu	516364	NM_004133	3174	Hs.241529	NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	"hepatocyte nuclear factor 4, gamma"	protein-coding
chr2.182521311.+	chr2	182521311	182521312	+	0	NA	"intron (NM_001030313, intron 1 of 10)"	CpG	523	NM_001160277	375298	Hs.732358	NM_001030311	ENSG00000188452	CERKL	RP26	ceramide kinase-like	protein-coding
chr6.170055322.-	chr6	170055322	170055323	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46837	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr17.71251075.-	chr17	71251075	71251076	-	0	NA	"intron (NM_001129885, intron 3 of 5)"	AluSx3|SINE|Alu	-6944	NM_001129885	642843	Hs.534707	NM_001129885	ENSG00000187959	CPSF4L	-	cleavage and polyadenylation specific factor 4-like	protein-coding
chr19.45324446.+	chr19	45324446	45324447	+	0	NA	"3' UTR (NM_005581, exon 15 of 15)"	"3' UTR (NM_005581, exon 15 of 15)"	12130	NM_001013257	4059	Hs.625725	NM_001013257	ENSG00000187244	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
chr21.47838706.+	chr21	47838706	47838707	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40156	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr7.1798900.-	chr7	1798900	1798901	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50102	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr1.32122080.-	chr1	32122080	32122081	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11242	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr6.46742364.-	chr6	46742364	46742365	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18730	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr15.66993605.+	chr15	66993605	66993606	+	0	NA	Intergenic	CpG	-1069	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr1.101786804.-	chr1	101786804	101786805	-	0	NA	Intergenic	AluY|SINE|Alu	-19647	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr6.56972728.-	chr6	56972728	56972729	-	0	NA	"3' UTR (NM_001257273, exon 4 of 4)"	"3' UTR (NM_001257273, exon 4 of 4)"	-17900	NM_015555	26036	Hs.705485	NM_001031623	ENSG00000112200	ZNF451	COASTER|dJ417I1.1	zinc finger protein 451	protein-coding
chr20.32056492.+	chr20	32056492	32056493	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21436	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr15.69603128.-	chr15	69603128	69603129	-	0	NA	"intron (NM_017705, intron 1 of 8)"	AluY|SINE|Alu	3614	NM_001104554	54852	Hs.591096	NM_001104554	ENSG00000137819	PAQR5	MPRG	progestin and adipoQ receptor family member V	protein-coding
chr16.58521685.-	chr16	58521685	58521686	-	0	NA	"exon (NM_001130487, exon 2 of 16)"	"exon (NM_001130487, exon 2 of 16)"	12362	NM_001242835	65009	Hs.322430	NM_001130487	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
chr5.73978107.+	chr5	73978107	73978108	+	0	NA	Intergenic	AluY|SINE|Alu	-2862	NM_000521	3074	Hs.69293	NM_000521	ENSG00000049860	HEXB	ENC-1AS	hexosaminidase B (beta polypeptide)	protein-coding
chr16.4823705.-	chr16	4823705	4823706	-	0	NA	Intergenic	AluSq2|SINE|Alu	6539	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr3.14172404.+	chr3	14172404	14172405	+	0	NA	"exon (NM_024334, exon 3 of 12)"	"exon (NM_024334, exon 3 of 12)"	5964	NM_024334	79188	Hs.517817	NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|LUMA	transmembrane protein 43	protein-coding
chr6.168352174.+	chr6	168352174	168352175	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25445	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr2.184300365.+	chr2	184300365	184300366	+	0	NA	Intergenic	AluY|SINE|Alu	311282	NM_138285	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP44|NP44|NUP53	nucleoporin 35kDa	protein-coding
chrX.97253608.-	chrX	97253608	97253609	-	0	NA	Intergenic	AluY|SINE|Alu	-1114701	NM_013347	29935	Hs.659349	NM_013347	ENSG00000204086	RPA4	HSU24186	"replication protein A4, 30kDa"	protein-coding
chr19.37792649.-	chr19	37792649	37792650	-	0	NA	Intergenic	SST1|Satellite|centr	32737	NR_029390	284412	Hs.635932	NR_029390		LOC284412	-	uncharacterized LOC284412	miscRNA
chr5.142141675.+	chr5	142141675	142141676	+	0	NA	Intergenic	AluY|SINE|Alu	-8617	NM_015071	23092	Hs.654668	NM_001135608	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
chr14.101693618.+	chr14	101693618	101693619	+	0	NA	Intergenic	Intergenic	157370	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr12.122667599.-	chr12	122667599	122667600	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	68	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr17.46825084.-	chr17	46825084	46825085	-	0	NA	Intergenic	CpG	18973	NM_006361	10481	Hs.66731	NM_006361	ENSG00000159184	HOXB13	PSGD	homeobox B13	protein-coding
chr5.112263703.-	chr5	112263703	112263704	-	0	NA	Intergenic	AluY|SINE|Alu	5672	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr1.90038740.+	chr1	90038740	90038741	+	0	NA	"intron (NM_001134476, intron 5 of 7)"	AluY|SINE|Alu	14468	NM_015350	23507	Hs.741594	NM_001134476	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	"leucine rich repeat containing 8 family, member B"	protein-coding
chr21.43198291.-	chr21	43198291	43198292	-	0	NA	Intergenic	Intergenic	11042	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr12.51765007.+	chr12	51765007	51765008	+	0	NA	"intron (NM_007210, intron 4 of 11)"	AluSq2|SINE|Alu	-20094	NM_001267615	9498	Hs.4749	NM_001039960	ENSG00000050438	SLC4A8	NBC3|NDCBE	"solute carrier family 4, sodium bicarbonate cotransporter, member 8"	protein-coding
chr11.107701208.+	chr11	107701208	107701209	+	0	NA	"intron (NM_017515, intron 1 of 7)"	AluY|SINE|Alu	28706	NM_017515	54733	Hs.524014	NM_017515	ENSG00000110660	SLC35F2	HSNOV1	"solute carrier family 35, member F2"	protein-coding
chr9.719255.-	chr9	719255	719256	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12449	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr20.3422268.-	chr20	3422268	3422269	-	0	NA	Intergenic	SVA_D|Other|Other	29397	NM_139322	8455	Hs.276252	NM_001207047	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
chr1.92206216.-	chr1	92206216	92206217	-	0	NA	"intron (NR_036634, intron 5 of 17)"	AluSx1|SINE|Alu	-145620	NM_003243	7049	Hs.735919	NM_001195683	ENSG00000069702	TGFBR3	BGCAN|betaglycan	"transforming growth factor, beta receptor III"	protein-coding
chr2.10916536.-	chr2	10916536	10916537	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36424	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr19.58125546.+	chr19	58125546	58125547	+	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	-284	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr14.102954970.+	chr14	102954970	102954971	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21158	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr7.100044743.-	chr7	100044743	100044744	-	0	NA	Intergenic	Intergenic	10649	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr6.168479852.+	chr6	168479852	168479853	+	0	NA	promoter-TSS (NM_024919)	promoter-TSS (NM_024919)	-13	NM_024919	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr17.65335494.+	chr17	65335494	65335495	+	0	NA	Intergenic	AluSx|SINE|Alu	27227	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr22.31732688.-	chr22	31732688	31732689	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9561	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr4.83939810.-	chr4	83939810	83939811	-	0	NA	Intergenic	AluSq2|SINE|Alu	5770	NM_001115007	132660	Hs.96952	NM_001115007	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120	lin-54 homolog (C. elegans)	protein-coding
chr19.2427760.-	chr19	2427760	2427761	-	0	NA	TTS (NM_032737)	TTS (NM_032737)	-115	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr1.3022445.+	chr1	3022445	3022446	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22094	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr15.91599302.+	chr15	91599302	91599303	+	0	NA	Intergenic	Intergenic	-33469	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr10.120427068.-	chr10	120427068	120427069	-	0	NA	Intergenic	AluSp|SINE|Alu	71908	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr10.70337082.+	chr10	70337082	70337083	+	0	NA	"intron (NM_030625, intron 2 of 11)"	AluSx|SINE|Alu	16965	NM_030625	80312	Hs.708977	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
chr6.4776770.+	chr6	4776770	4776771	+	0	NA	promoter-TSS (NM_004824)	promoter-TSS (NM_004824)	90	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr11.46389264.+	chr11	46389264	46389265	+	0	NA	"exon (NM_201532, exon 3 of 31)"	"exon (NM_201532, exon 3 of 31)"	6119	NM_001105540	8525	Hs.502461	NM_001105540	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	"diacylglycerol kinase, zeta"	protein-coding
chr19.4065777.-	chr19	4065777	4065778	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1039	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr4.26862503.-	chr4	26862503	26862504	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-190	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr5.86116414.+	chr5	86116414	86116415	+	0	NA	Intergenic	AluSp|SINE|Alu	200100	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr13.50138579.-	chr13	50138579	50138580	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21140	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr17.38194716.-	chr17	38194716	38194717	-	0	NA	"intron (NM_014815, intron 3 of 25)"	AluSc|SINE|Alu	10818	NR_102369	101340251		NR_102369		SNORD124	-	"small nucleolar RNA, C/D box 124"	snoRNA
chr7.158240659.-	chr7	158240659	158240660	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-84846	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr4.8912177.-	chr4	8912177	8912178	-	0	NA	Intergenic	Intergenic	38634	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr3.31574010.+	chr3	31574010	31574011	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-481	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr19.13497507.-	chr19	13497507	13497508	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119767	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr3.36494786.-	chr3	36494786	36494787	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72689	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr7.127657.+	chr7	127657	127658	+	0	NA	Intergenic	Intergenic	-65312	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	"family with sequence similarity 20, member C"	protein-coding
chr14.23701964.-	chr14	23701964	23701965	-	0	NA	Intergenic	SVA_C|Other|Other	49095	NM_012244	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	"solute carrier family 7 (amino acid transporter light chain, L system), member 8"	protein-coding
chr2.91874346.+	chr2	91874346	91874347	+	0	NA	Intergenic	CpG	-26371	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr11.76862026.-	chr11	76862026	76862027	-	0	NA	"intron (NM_001127180, intron 4 of 48)"	"intron (NM_001127180, intron 4 of 48)"	-22710	NM_001127180	4647	Hs.370421	NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
chr19.8298150.-	chr19	8298150	8298151	-	0	NA	"intron (NM_024552, intron 2 of 11)"	AluSx|SINE|Alu	-23933	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
chr6.2221734.+	chr6	2221734	2221735	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24134	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chrX.153657113.-	chrX	153657113	153657114	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-135	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr19.7939178.-	chr19	7939178	7939179	-	0	NA	"5' UTR (NM_001190467, exon 1 of 6)"	"5' UTR (NM_001190467, exon 1 of 6)"	-148	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr7.72991458.-	chr7	72991458	72991459	-	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	-1555	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr19.17585868.+	chr19	17585868	17585869	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4568	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr19.489778.+	chr19	489778	489779	+	0	NA	Intergenic	CpG	-6712	NM_130760	8174	Hs.102598	NM_130760	ENSG00000099866	MADCAM1	MACAM1	mucosal vascular addressin cell adhesion molecule 1	protein-coding
chr15.100514145.-	chr15	100514145	100514146	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167013	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr19.16335225.+	chr19	16335225	16335226	+	0	NA	"intron (NM_001130524, intron 6 of 12)"	"intron (NM_001130524, intron 6 of 12)"	26560	NM_032493	8907	Hs.71040	NM_001130524	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A	"adaptor-related protein complex 1, mu 1 subunit"	protein-coding
chr4.55191904.-	chr4	55191904	55191905	-	0	NA	Intergenic	SVA_D|Other|Other	-96640	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr2.192374888.+	chr2	192374888	192374889	+	0	NA	Intergenic	AluY|SINE|Alu	-167910	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr10.135031503.-	chr10	135031503	135031504	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12275	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr11.64677338.-	chr11	64677338	64677339	-	0	NA	"exon (NM_015104, exon 14 of 41)"	"exon (NM_015104, exon 14 of 41)"	-7384	NM_015104	23130	Hs.370671	NM_015104	ENSG00000110046	ATG2A	-	autophagy related 2A	protein-coding
chr8.6022640.+	chr8	6022640	6022641	+	0	NA	Intergenic	AluY|SINE|Alu	241429	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	miscRNA
chr13.21363832.+	chr13	21363832	21363833	+	0	NA	"intron (NM_022459, intron 19 of 22)"	AluY|SINE|Alu	-15775	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
chr1.41960598.+	chr1	41960598	41960599	+	0	NA	Intergenic	Intergenic	-10254	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr7.6307989.+	chr7	6307989	6307990	+	0	NA	"intron (NM_004227, intron 1 of 12)"	AluSz|SINE|Alu	4253	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
chr1.121484137.-	chr1	121484137	121484138	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-223227	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr8.48985946.+	chr8	48985946	48985947	+	0	NA	Intergenic	AluSq2|SINE|Alu	64951	NM_003350	7336	Hs.491695	NM_003350		UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding
chr17.46187007.-	chr17	46187007	46187008	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2060	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr2.25758493.-	chr2	25758493	25758494	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114598	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr3.46792387.+	chr3	46792387	46792388	+	0	NA	Intergenic	CpG	-6142	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr17.57868975.+	chr17	57868975	57868976	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49652	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr16.3755361.+	chr16	3755361	3755362	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12237	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr19.44489494.-	chr19	44489494	44489495	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1172	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr7.30175059.+	chr7	30175059	30175060	+	0	NA	"intron (NM_152793, intron 1 of 2)"	CpG	507	NM_152793	222166	Hs.200100	NM_152793	ENSG00000180354	C7orf41	Ells1	chromosome 7 open reading frame 41	protein-coding
chr3.31841361.+	chr3	31841361	31841362	+	0	NA	"intron (NM_001174060, intron 3 of 10)"	AluSx4|SINE|Alu	95656	NR_049771	100874206	Hs.662428	NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	miscRNA
chr17.45349574.+	chr17	45349574	45349575	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18366	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr16.87787448.-	chr16	87787448	87787449	-	0	NA	"intron (NM_001184854, intron 2 of 9)"	AluSc8|SINE|Alu	-12150	NM_017566	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr9.135013581.+	chr9	135013581	135013582	+	0	NA	Intergenic	AluSz|SINE|Alu	-23753	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr2.20424088.+	chr2	20424088	20424089	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	839	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chrX.9366125.+	chrX	9366125	9366126	+	0	NA	Intergenic	AluY|SINE|Alu	-65210	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr2.241622528.-	chr2	241622528	241622529	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	211	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr19.53534620.-	chr19	53534620	53534621	-	0	NA	Intergenic	AluSq2|SINE|Alu	13371	NM_001191055	100271846	Hs.420445	NM_001191055	ENSG00000268964	ERVV-2	ENVV2|HERV-V2	"endogenous retrovirus group V, member 2"	protein-coding
chr6.64944897.-	chr6	64944897	64944898	-	0	NA	"intron (NM_001142800, intron 30 of 42)"	AluSx1|SINE|Alu	-588466	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
chr1.76284580.-	chr1	76284580	76284581	-	0	NA	"intron (NM_002440, intron 6 of 19)"	AluY|SINE|Alu	-22024	NM_002440	4438	Hs.216639	NM_002440	ENSG00000057468	MSH4	-	mutS homolog 4 (E. coli)	protein-coding
chr9.129229377.-	chr9	129229377	129229378	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56594	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr8.43413772.-	chr8	43413772	43413773	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266187	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr2.34289829.+	chr2	34289829	34289830	+	0	NA	Intergenic	AluSz|SINE|Alu	-336545	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chrY.15683492.-	chrY	15683492	15683493	-	0	NA	Intergenic	AluYb8|SINE|Alu	90942	NR_047601	7404	Hs.115277	NM_001258249	ENSG00000183878	UTY	UTY1	"ubiquitously transcribed tetratricopeptide repeat containing, Y-linked"	protein-coding
chr11.64120573.-	chr11	64120573	64120574	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6052	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr16.4823715.+	chr16	4823715	4823716	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6549	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr1.181058700.+	chr1	181058700	181058701	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1062	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr17.79220934.+	chr17	79220934	79220935	+	0	NA	"intron (NM_001037984, intron 14 of 15)"	"intron (NM_001037984, intron 14 of 15)"	7823	NM_001086521	284184	Hs.356545	NM_001086521	ENSG00000224877	C17orf89	-	chromosome 17 open reading frame 89	protein-coding
chr16.71926468.+	chr16	71926468	71926469	+	0	NA	Intergenic	AluY|SINE|Alu	-1843	NM_001270976	9798	Hs.232194	NM_001270975		IST1	OLC1	increased sodium tolerance 1 homolog (yeast)	protein-coding
chr3.46709804.-	chr3	46709804	46709805	-	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	-9095	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr17.73615812.+	chr17	73615812	73615813	+	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	-13702	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr10.12405351.+	chr10	12405351	12405352	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13768	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr7.158284936.+	chr7	158284936	158284937	+	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	40569	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr19.2251187.+	chr19	2251187	2251188	+	0	NA	TTS (NR_036207)	TTS (NR_036207)	549	NR_036207	100423031		NR_036207		MIR4321	-	microRNA 4321	miscRNA
chr6.13860470.+	chr6	13860470	13860471	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-45678	NM_001031713	63933	Hs.214043	NM_022102		MCUR1	C6orf79|CCDC90A	mitochondrial calcium uniporter regulator 1	protein-coding
chr3.172180156.-	chr3	172180156	172180157	-	0	NA	Intergenic	AluY|SINE|Alu	13910	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr8.142397036.-	chr8	142397036	142397037	-	0	NA	Intergenic	Intergenic	19671	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr10.6985559.+	chr10	6985559	6985560	+	0	NA	Intergenic	AluSx1|SINE|Alu	163999	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr5.171395318.+	chr5	171395318	171395319	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38559	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr17.3317653.-	chr17	3317653	3317654	-	0	NA	Intergenic	AluSc8|SINE|Alu	6209	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr20.1317816.+	chr20	1317816	1317817	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-7937	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr19.10587518.+	chr19	10587518	10587519	+	0	NA	Intergenic	AluSq2|SINE|Alu	23885	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr21.34914895.-	chr21	34914895	34914896	-	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	-300	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr10.21183602.-	chr10	21183602	21183603	-	0	NA	"intron (NM_006393, intron 2 of 27)"	AluY|SINE|Alu	-2929	NM_006393	10529	Hs.5025	NM_001173484	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding
chr16.18984704.+	chr16	18984704	18984705	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10552	NM_024847	79905	Hs.531661	NM_001160364	ENSG00000170537	TMC7	-	transmembrane channel-like 7	protein-coding
chr22.22550482.-	chr22	22550482	22550483	-	0	NA	Intergenic	Intergenic	48718	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr1.245525695.-	chr1	245525695	245525696	-	0	NA	"intron (NM_018012, intron 2 of 14)"	AluSc|SINE|Alu	-207408	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
chr9.100617235.+	chr9	100617235	100617236	+	0	NA	"exon (NM_004473, exon 1 of 1)"	"exon (NM_004473, exon 1 of 1)"	1698	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2	forkhead box E1 (thyroid transcription factor 2)	protein-coding
chr7.1286206.-	chr7	1286206	1286207	-	0	NA	Intergenic	CpG	-13552	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chrX.16786184.-	chrX	16786184	16786185	-	0	NA	Intergenic	AluY|SINE|Alu	18371	NM_001168683	55787	Hs.555961	NM_001168683	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5	taxilin gamma	protein-coding
chr16.4537765.-	chr16	4537765	4537766	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8094	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr12.14396227.+	chr12	14396227	14396228	+	0	NA	Intergenic	AluSc|SINE|Alu	-122384	NM_018179	55729	Hs.591151	NM_018179	ENSG00000171681	ATF7IP	AM|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
chr9.36036936.-	chr9	36036936	36036937	-	0	NA	promoter-TSS (NM_021111)	promoter-TSS (NM_021111)	-26	NM_021111	8434	Hs.744121	NM_021111	ENSG00000122707	RECK	ST15	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding
chr13.96681153.-	chr13	96681153	96681154	-	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	-24583	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr13.111268318.-	chr13	111268318	111268319	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-387	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr4.5892145.-	chr4	5892145	5892146	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1830	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr22.21405403.+	chr22	21405403	21405404	+	0	NA	"intron (NR_027006, intron 4 of 10)"	AluJr|SINE|Alu	5154	NR_027006	400891	Hs.291198	NM_001013675	ENSG00000187905	LOC400891	-	chromosome 14 open reading frame 166B pseudogene	pseudo
chr6.168352106.+	chr6	168352106	168352107	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25513	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr15.29089026.-	chr15	29089026	29089027	-	0	NA	"intron (NR_037599, intron 12 of 13)"	"intron (NR_037599, intron 12 of 13)"	-4795	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr1.54953527.+	chr1	54953527	54953528	+	0	NA	Intergenic	Intergenic	-60280	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr11.19881571.-	chr11	19881571	19881572	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99942	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr3.45187025.-	chr3	45187025	45187026	-	0	NA	"intron (NM_022842, intron 1 of 8)"	"intron (NM_022842, intron 1 of 8)"	-889	NM_022842	64866	Hs.476093	NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
chrX.69654661.+	chrX	69654661	69654662	+	0	NA	Intergenic	CpG	-10044	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr10.14719537.-	chr10	14719537	14719538	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97359	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr3.52030310.-	chr3	52030310	52030311	-	0	NA	promoter-TSS (NM_000992)	promoter-TSS (NM_000992)	352	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
chr16.28435240.+	chr16	28435240	28435241	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2535	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr7.5396292.-	chr7	5396292	5396293	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	-66885	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr16.49498967.+	chr16	49498967	49498968	+	0	NA	Intergenic	CpG	91159	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr1.40330226.+	chr1	40330226	40330227	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18951	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr12.132628232.-	chr12	132628232	132628233	-	0	NA	promoter-TSS (NM_024078)	promoter-TSS (NM_024078)	-648	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr7.70011638.-	chr7	70011638	70011639	-	0	NA	"intron (NM_015570, intron 5 of 18)"	AluY|SINE|Alu	585885	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr8.126398077.+	chr8	126398077	126398078	+	0	NA	Intergenic	Intergenic	-44486	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr1.163468382.+	chr1	163468382	163468383	+	0	NA	Intergenic	SVA_A|Other|Other	176659	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr13.66584782.+	chr13	66584782	66584783	+	0	NA	Intergenic	AluY|SINE|Alu	-814519	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr9.10974533.+	chr9	10974533	10974534	+	0	NA	Intergenic	L1PBa|LINE|L1	-361810	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr16.3019613.+	chr16	3019613	3019614	+	0	NA	"5' UTR (NM_152341, exon 1 of 3)"	"5' UTR (NM_152341, exon 1 of 3)"	271	NM_152341	124222	Hs.351474	NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member IV	protein-coding
chr1.40330216.-	chr1	40330216	40330217	-	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	-18961	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr7.36192814.-	chr7	36192814	36192815	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	22	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr22.38336401.-	chr22	38336401	38336402	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13253	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr1.171640691.-	chr1	171640691	171640692	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	18918	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr9.102581973.-	chr9	102581973	102581974	-	0	NA	Intergenic	CpG	2164	NM_173199	8013	Hs.279522	NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1|TEC	"nuclear receptor subfamily 4, group A, member 3"	protein-coding
chr7.1704157.-	chr7	1704157	1704158	-	0	NA	Intergenic	CpG	44641	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr2.133015900.-	chr2	133015900	133015901	-	0	NA	promoter-TSS (NR_027020)	promoter-TSS (NR_027020)	358	NR_027020	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B-like	pseudo
chr10.126293265.-	chr10	126293265	126293266	-	0	NA	"intron (NM_022126, intron 6 of 6)"	"intron (NM_022126, intron 6 of 6)"	-139665	NM_014661	9679	Hs.129195	NM_014661	ENSG00000189319	FAM53B	KIAA0140|RP11-12J10.2|bA12J10.2	"family with sequence similarity 53, member B"	protein-coding
chr14.20670504.+	chr14	20670504	20670505	+	0	NA	Intergenic	AluSq2|SINE|Alu	5009	NM_001005503	390439	Hs.554582	NM_001005503	ENSG00000196832	OR11G2	OR14-34	"olfactory receptor, family 11, subfamily G, member 2"	protein-coding
chr1.23931930.-	chr1	23931930	23931931	-	0	NA	Intergenic	AluY|SINE|Alu	21894	NR_027042	259283	Hs.523369	NR_027042	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	miscRNA
chr8.67618026.-	chr8	67618026	67618027	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6627	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chrX.99100687.-	chrX	99100687	99100688	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94154	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr11.41260619.-	chr11	41260619	41260620	-	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	-220567	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr20.32757611.-	chr20	32757611	32757612	-	0	NA	Intergenic	AluSc8|SINE|Alu	57526	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr15.91370856.-	chr15	91370856	91370857	-	0	NA	Intergenic	AluSz|SINE|Alu	41029	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr4.185656750.+	chr4	185656750	185656751	+	0	NA	Intergenic	AluY|SINE|Alu	-1464	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr6.88118044.+	chr6	88118044	88118045	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	354	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr2.241363414.-	chr2	241363414	241363415	-	0	NA	Intergenic	Intergenic	11701	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr10.112860890.+	chr10	112860890	112860891	+	0	NA	Intergenic	MIRc|SINE|MIR	24100	NM_000681	150	Hs.249159	NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
chr14.104097547.-	chr14	104097547	104097548	-	0	NA	"intron (NM_182923, intron 1 of 14)"	AluY|SINE|Alu	-2022	NM_005552	3831	Hs.657678	NM_001130107	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
chr10.30995811.+	chr10	30995811	30995812	+	0	NA	Intergenic	Intergenic	-77164	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
chr9.141038871.-	chr9	141038871	141038872	-	0	NA	Intergenic	Intergenic	5694	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr10.59080719.-	chr10	59080719	59080720	-	0	NA	Intergenic	AluY|SINE|Alu	16400	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr13.111285569.-	chr13	111285569	111285570	-	0	NA	"intron (NR_040103, intron 5 of 9)"	LTR12C|LTR|ERV1	-17638	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chrX.132930097.+	chrX	132930097	132930098	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189576	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr22.49593752.+	chr22	49593752	49593753	+	0	NA	Intergenic	Intergenic	331170	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr4.81796733.+	chr4	81796733	81796734	+	0	NA	"intron (NM_001206997, intron 5 of 6)"	AluSq2|SINE|Alu	-155386	NM_001201	651	Hs.387411	NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
chr6.88118054.+	chr6	88118054	88118055	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	364	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chrM.10682.-	chrM	10682	10683	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr14.105158948.-	chr14	105158948	105158949	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-3005	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr2.241373404.+	chr2	241373404	241373405	+	0	NA	Intergenic	Intergenic	-1711	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr15.63229249.-	chr15	63229249	63229250	-	0	NA	Intergenic	AluSp|SINE|Alu	105589	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr7.150812751.+	chr7	150812751	150812752	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28925	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr7.821281.-	chr7	821281	821282	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33913	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr10.131769827.-	chr10	131769827	131769828	-	0	NA	Intergenic	CpG-3433	7736	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr17.79790883.+	chr17	79790883	79790884	+	0	NA	TTS (NM_001007533)	TTS (NM_001007533)	284	NM_001093767	348262	Hs.514632	NM_001093767	ENSG00000225663	FAM195B	-	"family with sequence similarity 195, member B"	protein-coding
chr5.114712459.-	chr5	114712459	114712460	-	0	NA	Intergenic	AluYc3|SINE|Alu	80001	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr18.77493499.+	chr18	77493499	77493500	+	0	NA	"intron (NM_001202504, intron 11 of 12)"	CpG	52069	NM_001202504	9150	Hs.734021	NM_001202504	ENSG00000060069	CTDP1	CCFDN|FCP1	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1"	protein-coding
chr16.33293949.+	chr16	33293949	33293950	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4753	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr10.133869283.-	chr10	133869283	133869284	-	0	NA	Intergenic	Intergenic	49030	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr5.86907868.+	chr5	86907868	86907869	+	0	NA	Intergenic	AluY|SINE|Alu	-199018	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr1.202108598.-	chr1	202108598	202108599	-	0	NA	"intron (NM_001256129, intron 1 of 5)"	AluSx3|SINE|Alu	-5273	NM_138795	127829	Hs.604697	NM_001256129	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP-ribosylation factor-like 8A	protein-coding
chr20.57070913.-	chr20	57070913	57070914	-	0	NA	"intron (NM_153360, intron 1 of 3)"	"intron (NM_153360, intron 1 of 3)"	-19036	NM_153360	164284	Hs.119286	NM_153360	ENSG00000198768	APCDD1L	-	adenomatosis polyposis coli down-regulated 1-like	protein-coding
chr19.46786021.+	chr19	46786021	46786022	+	0	NA	"intron (NR_046936, intron 3 of 3)"	AluSx1|SINE|Alu	-14282	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	"hypoxia inducible factor 3, alpha subunit"	protein-coding
chr8.22929676.+	chr8	22929676	22929677	+	0	NA	"intron (NR_038873, intron 1 of 2)"	"intron (NR_038873, intron 1 of 2)"	-2976	NM_003842	8795	Hs.521456	NM_003842	ENSG00000120889	TNFRSF10B	CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9	"tumor necrosis factor receptor superfamily, member 10b"	protein-coding
chr7.100044630.+	chr7	100044630	100044631	+	0	NA	Intergenic	AluY|SINE|Alu	-10536	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr1.41828005.-	chr1	41828005	41828006	-	0	NA	Intergenic	CpG	120190	NM_001172219	22955	Hs.571874	NM_001031694	ENSG00000010803	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
chr11.1122319.-	chr11	1122319	1122320	-	0	NA	Intergenic	Intergenic	-47444	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr12.3601391.+	chr12	3601391	3601392	+	0	NA	"intron (NM_019854, intron 1 of 9)"	CpG	1027	NM_019854	56341	Hs.504530	NM_001256537	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
chr2.70133294.-	chr2	70133294	70133295	-	0	NA	TTS (NM_006857)	TTS (NM_006857)	8879	NM_001202514	4084	Hs.468908	NM_001202513	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
chr14.23233402.-	chr14	23233402	23233403	-	0	NA	Intergenic	FLAM_C|SINE|Alu	2329	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr4.1006061.-	chr4	1006061	1006062	-	0	NA	promoter-TSS (NM_021923)	promoter-TSS (NM_021923)	191	NM_021923	53834	Hs.193326	NM_001004356	ENSG00000127418	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
chr10.131769836.-	chr10	131769836	131769837	-	0	NA	Intergenic	CpG-3433	7745	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr20.44451698.+	chr20	44451698	44451699	+	0	NA	TTS (NM_003279)	TTS (NM_003279)	4255	NM_003279	7125	Hs.182421	NM_003279	ENSG00000101470	TNNC2	-	troponin C type 2 (fast)	protein-coding
chr9.138959057.+	chr9	138959057	138959058	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28074	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr10.70337069.+	chr10	70337069	70337070	+	0	NA	"intron (NM_030625, intron 2 of 11)"	AluSx|SINE|Alu	16952	NM_030625	80312	Hs.708977	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
chr2.202092471.-	chr2	202092471	202092472	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5695	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr4.8913697.+	chr4	8913697	8913698	+	0	NA	Intergenic	Intergenic	-37780	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr2.136633781.+	chr2	136633781	136633782	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	266	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr14.68143277.+	chr14	68143277	68143278	+	0	NA	TTS (NM_016026)	TTS (NM_016026)	-1675	NM_006370	10490	Hs.741177	NM_006370		VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
chr1.39540453.+	chr1	39540453	39540454	+	0	NA	Intergenic	AluSp|SINE|Alu	-6636	NM_012090	23499	Hs.692278	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
chr6.46742381.-	chr6	46742381	46742382	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18713	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chrX.122993630.-	chrX	122993630	122993631	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	32	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr18.20879345.+	chr18	20879345	20879346	+	0	NA	"intron (NM_032933, intron 14 of 14)"	L3|LINE|CR1	138580	NM_032933	85019	Hs.137562	NM_032933	ENSG00000134490	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
chr7.64493625.-	chr7	64493625	64493626	-	0	NA	Intergenic	SVA_C|Other|Other	5107	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr6.126100198.+	chr6	126100198	126100199	+	0	NA	Intergenic	AluY|SINE|Alu	-2109	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr1.54966382.-	chr1	54966382	54966383	-	0	NA	Intergenic	AluSq|SINE|Alu	47425	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr1.53770286.-	chr1	53770286	53770287	-	0	NA	"intron (NM_033300, intron 2 of 16)"	"intron (NM_033300, intron 2 of 16)"	-23535	NM_004631	7804	Hs.280387	NM_001018054		LRP8	APOER2|HSZ75190|LRP-8|MCI1	"low density lipoprotein receptor-related protein 8, apolipoprotein e receptor"	protein-coding
chr1.53792617.+	chr1	53792617	53792618	+	0	NA	"exon (NM_017522, exon 2 of 16)"	"exon (NM_017522, exon 2 of 16)"	1204	NM_004631	7804	Hs.280387	NM_001018054		LRP8	APOER2|HSZ75190|LRP-8|MCI1	"low density lipoprotein receptor-related protein 8, apolipoprotein e receptor"	protein-coding
chr5.1137820.-	chr5	1137820	1137821	-	0	NA	Intergenic	Intergenic	25648	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr20.62194061.-	chr20	62194061	62194062	-	0	NA	"exon (NM_001037335, exon 9 of 20)"	"exon (NM_001037335, exon 9 of 20)"	-5046	NM_033405	85441	Hs.517180	NM_001037335	ENSG00000130589	HELZ2	PDIP-1|PRIC285	"helicase with zinc finger 2, transcriptional coactivator"	protein-coding
chr20.61471743.+	chr20	61471743	61471744	+	0	NA	TTS (NM_006602)	TTS (NM_006602)	-4733	NM_080750	100132911	Hs.126248	NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1|dJ885L7.5	"DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1"	protein-coding
chr14.97183886.+	chr14	97183886	97183887	+	0	NA	Intergenic	AluY|SINE|Alu	-79798	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr22.46326765.+	chr22	46326765	46326766	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46243	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chrX.9477150.-	chrX	9477150	9477151	-	0	NA	"intron (NM_005647, intron 2 of 17)"	AluY|SINE|Alu	-43949	NM_005647	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr1.161508239.+	chr1	161508239	161508240	+	0	NA	Intergenic	AluYf4|SINE|Alu	11579	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr7.5703244.-	chr7	5703244	5703245	-	0	NA	"intron (NR_046834, intron 2 of 2)"	"intron (NR_046834, intron 2 of 2)"	-16848	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr12.110867913.+	chr12	110867913	110867914	+	0	NA	Intergenic	Intergenic	20245	NM_005719	10094	Hs.524741	NM_005719	ENSG00000111229	ARPC3	ARC21|p21-Arc	"actin related protein 2/3 complex, subunit 3, 21kDa"	protein-coding
chr17.35241111.+	chr17	35241111	35241112	+	0	NA	Intergenic	AluSx1|SINE|Alu	-53661	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr19.10542772.+	chr19	10542772	10542773	+	0	NA	promoter-TSS (NM_001111309)	promoter-TSS (NM_001111309)	-339	NM_001111309	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr3.38106445.+	chr3	38106445	38106446	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25749	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr2.70133295.-	chr2	70133295	70133296	-	0	NA	TTS (NM_006857)	TTS (NM_006857)	8878	NM_001202514	4084	Hs.468908	NM_001202513	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
chr22.20137579.-	chr22	20137579	20137580	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	148	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr4.1332029.+	chr4	1332029	1332030	+	0	NA	"intron (NM_001017405, intron 7 of 8)"	"intron (NM_001017405, intron 7 of 8)"	-9075	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr5.7850332.-	chr5	7850332	7850333	-	0	NA	"intron (NM_001089584, intron 1 of 2)"	CpG	-1271	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
chr9.27541457.+	chr9	27541457	27541458	+	0	NA	Intergenic	AluY|SINE|Alu	-11607	NM_024761	79817	Hs.733701	NM_024761	ENSG00000120162	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
chr16.28435288.+	chr16	28435288	28435289	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2487	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr17.57868941.-	chr17	57868941	57868942	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49686	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr5.6583484.-	chr5	6583484	6583485	-	0	NA	promoter-TSS (NR_024424)	promoter-TSS (NR_024424)	-74	NR_024424	255167	Hs.435515	NR_024423	ENSG00000250056	LOC255167	-	uncharacterized LOC255167	miscRNA
chr6.70692584.-	chr6	70692584	70692585	-	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	-116136	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr9.140123364.-	chr9	140123364	140123365	-	0	NA	"exon (NM_001190228, exon 3 of 3)"	"exon (NM_001190228, exon 3 of 3)"	-1346	NM_001190228	643596	Hs.730186	NM_001190228	ENSG00000233198	RNF224	-	ring finger protein 224	protein-coding
chr6.8388546.-	chr6	8388546	8388547	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47248	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr17.74632754.-	chr17	74632754	74632755	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7140	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr1.145400434.+	chr1	145400434	145400435	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12757	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr6.165953168.+	chr6	165953168	165953169	+	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	122420	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr7.43929931.+	chr7	43929931	43929932	+	0	NA	"intron (NM_001077664, intron 1 of 5)"	AluY|SINE|Alu	16300	NM_001204871	100534592	Hs.663312	NM_001204871		URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
chr2.74351395.+	chr2	74351395	74351396	+	0	NA	Intergenic	SVA_B|Other|Other	23644	NM_212552	388962	Hs.61472	NM_001035505	ENSG00000163170	BOLA3	MMDS2	bolA homolog 3 (E. coli)	protein-coding
chr2.136403835.-	chr2	136403835	136403836	-	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	19132	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr14.101693633.-	chr14	101693633	101693634	-	0	NA	Intergenic	Intergenic	-157385	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr1.183670800.-	chr1	183670800	183670801	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48352	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr1.32731821.+	chr1	32731821	32731822	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7891	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr15.66993584.+	chr15	66993584	66993585	+	0	NA	Intergenic	CpG	-1090	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr21.20831240.+	chr21	20831240	20831241	+	0	NA	Intergenic	AluYf4|SINE|Alu	-1055270	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chr16.19729843.-	chr16	19729843	19729844	-	0	NA	promoter-TSS (NM_001012991)	promoter-TSS (NM_001012991)	351	NM_001012991	400506	Hs.585209	NM_001012991		KNOP1	101F10.1|C16orf88|FAM191A|TSG118	lysine-rich nucleolar protein 1	protein-coding
chr13.82029589.-	chr13	82029589	82029590	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114503	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr1.149646814.-	chr1	149646814	149646815	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70361	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr12.111821224.+	chr12	111821224	111821225	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14299	NM_144671	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr16.84670306.-	chr16	84670306	84670307	-	0	NA	Intergenic	AluY|SINE|Alu	11825	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr2.87642256.+	chr2	87642256	87642257	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-112718	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr5.14460455.-	chr5	14460455	14460456	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121436	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr9.1044864.+	chr9	1044864	1044865	+	0	NA	Intergenic	Intergenic	-5482	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr17.48350761.+	chr17	48350761	48350762	+	0	NA	"intron (NM_001168215, intron 1 of 5)"	CpG	-1027	NM_153229	162461	Hs.224630	NM_001168215	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
chr1.21078475.-	chr1	21078475	21078476	-	0	NA	"intron (NM_016287, intron 9 of 12)"	AluSx|SINE|Alu	19342	NM_001103160	400745	Hs.591522	NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
chr8.141030025.+	chr8	141030025	141030026	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314726	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr9.107407974.+	chr9	107407974	107407975	+	0	NA	Intergenic	AluSx|SINE|Alu	-27489	NM_001001956	286362	Hs.553682	NM_001001956	ENSG00000136839	OR13C9	OR37L|OR9-13	"olfactory receptor, family 13, subfamily C, member 9"	protein-coding
chr4.8873840.-	chr4	8873840	8873841	-	0	NA	promoter-TSS (NM_018942)	promoter-TSS (NM_018942)	297	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr2.9934273.-	chr2	9934273	9934274	-	0	NA	Intergenic	Intergenic	49298	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr1.227224322.-	chr1	227224322	227224323	-	0	NA	"intron (NM_014826, intron 22 of 34)"	AluYf4|SINE|Alu	-96384	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	ADCK3	ARCA2|CABC1|COQ10D4|COQ8|SCAR9	aarF domain containing kinase 3	protein-coding
chr20.33283442.-	chr20	33283442	33283443	-	0	NA	Intergenic	AluY|SINE|Alu	8706	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr13.77954566.-	chr13	77954566	77954567	-	0	NA	Intergenic	AluSc|SINE|Alu	53389	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr2.240402001.+	chr2	240402001	240402002	+	0	NA	Intergenic	Intergenic	-79358	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr6.88090575.+	chr6	88090575	88090576	+	0	NA	Intergenic	AluJb|SINE|Alu	-16267	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr13.83333803.-	chr13	83333803	83333804	-	0	NA	Intergenic	AluYb8|SINE|Alu	-1122725	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr20.5213462.+	chr20	5213462	5213463	+	0	NA	Intergenic	AluJr4|SINE|Alu	81553	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr3.129048082.-	chr3	129048082	129048083	-	0	NA	Intergenic	AluY|SINE|Alu	12962	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr19.47627940.+	chr19	47627940	47627941	+	0	NA	Intergenic	AluY|SINE|Alu	-6140	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr4.190662144.+	chr4	190662144	190662145	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199830	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr4.55034958.+	chr4	55034958	55034959	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60306	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr8.60674604.-	chr8	60674604	60674605	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519350	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr1.217314039.+	chr1	217314039	217314040	+	0	NA	Intergenic	Intergenic	-2942	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr6.27196005.-	chr6	27196005	27196006	-	0	NA	Intergenic	AluY|SINE|Alu	19497	NM_005865	10279	Hs.274407	NM_005865	ENSG00000112812	PRSS16	TSSP	"protease, serine, 16 (thymus)"	protein-coding
chr16.49892636.+	chr16	49892636	49892637	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-806	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr12.133020967.+	chr12	133020967	133020968	+	0	NA	Intergenic	Intergenic	-46190	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr6.167607667.-	chr6	167607667	167607668	-	0	NA	Intergenic	Intergenic	-23586	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr15.57209804.-	chr15	57209804	57209805	-	0	NA	"non-coding (NR_015419, exon 1 of 4)"	"non-coding (NR_015419, exon 1 of 4)"	-893	NR_015419	145783	Hs.620525	NR_015419	ENSG00000259484	LOC145783	-	uncharacterized LOC145783	miscRNA
chr2.38703674.+	chr2	38703674	38703675	+	0	NA	Intergenic	Intergenic	-99242	NR_024191	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr4.114652839.-	chr4	114652839	114652840	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30244	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr11.66884113.+	chr11	66884113	66884114	+	0	NA	Intergenic	AluSx|SINE|Alu	-2627	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr1.55180394.-	chr1	55180394	55180395	-	0	NA	"intron (NR_037640, intron 23 of 32)"	AluSc8|SINE|Alu	1101	NM_004623	7268	Hs.729029	NM_004623	ENSG00000243725	TTC4	-	tetratricopeptide repeat domain 4	protein-coding
chr12.51681432.+	chr12	51681432	51681433	+	0	NA	"intron (NM_016293, intron 11 of 12)"	"intron (NM_016293, intron 11 of 12)"	-17230	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr5.179680173.+	chr5	179680173	179680174	+	0	NA	"intron (NM_139068, intron 5 of 11)"	LTR16B2|LTR|ERVL	38898	NM_139070	5601	Hs.484371	NM_001135044	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
chr8.67454335.-	chr8	67454335	67454336	-	0	NA	Intergenic	Intergenic	-48844	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr9.80376627.-	chr9	80376627	80376628	-	0	NA	"intron (NM_002072, intron 5 of 6)"	SVA_F|Other|Other	113395	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	"guanine nucleotide binding protein (G protein), alpha 14"	protein-coding
chr22.50422257.+	chr22	50422257	50422258	+	0	NA	Intergenic	CpG	28798	NM_001001694	400935	Hs.526712	NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E-like	protein-coding
chr6.5085632.+	chr6	5085632	5085633	+	0	NA	promoter-TSS (NM_001145115)	promoter-TSS (NM_001145115)	-88	NM_001145115	648791	Hs.653089	NM_001145115	ENSG00000219607	PPP1R3G	-	"protein phosphatase 1, regulatory subunit 3G"	protein-coding
chr22.43670641.-	chr22	43670641	43670642	-	0	NA	"intron (NM_173050, intron 4 of 21)"	"intron (NM_173050, intron 4 of 21)"	-68753	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr5.141451792.+	chr5	141451792	141451793	+	0	NA	Intergenic	AluSq|SINE|Alu	-36532	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr19.9311197.-	chr19	9311197	9311198	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14350	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr5.28928047.+	chr5	28928047	28928048	+	0	NA	TTS (NR_033961)	TTS (NR_033961)	1070	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr1.54953503.-	chr1	54953503	54953504	-	0	NA	Intergenic	Intergenic	60304	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr12.70060055.+	chr12	70060055	70060056	+	0	NA	"intron (NM_032735, intron 9 of 9)"	AluSz|SINE|Alu	23001	NM_152439	144453	Hs.280782	NM_032735	ENSG00000127325	BEST3	VMD2L3	bestrophin 3	protein-coding
chr6.130135999.+	chr6	130135999	130136000	+	0	NA	Intergenic	AluSc|SINE|Alu	46417	NM_001010876	253582	Hs.448372	NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
chr17.73615790.-	chr17	73615790	73615791	-	0	NA	"non-coding (NR_003587, exon 44 of 61)"	"non-coding (NR_003587, exon 44 of 61)"	13724	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr12.132623195.+	chr12	132623195	132623196	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5685	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr11.67351059.-	chr11	67351059	67351060	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	7	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr13.20343673.-	chr13	20343673	20343674	-	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	-13486	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr8.86574407.+	chr8	86574407	86574408	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	335	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr1.149646776.+	chr1	149646776	149646777	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70323	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr11.3167011.-	chr11	3167011	3167012	-	0	NA	"intron (NM_145638, intron 1 of 20)"	"intron (NM_145638, intron 1 of 20)"	-19571	NM_020896	114879	Hs.436166	NM_001144063	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein-like 5	protein-coding
chr6.15189317.-	chr6	15189317	15189318	-	0	NA	Intergenic	SVA_F|Other|Other	56889	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr5.43229296.-	chr5	43229296	43229297	-	0	NA	"intron (NR_072980, intron 1 of 3)"	AluSq2|SINE|Alu	-36342	NR_072980	167359	Hs.25845	NM_153361	ENSG00000177453	NIM1	-	serine/threonine-protein kinase NIM1	protein-coding
chr5.178032031.-	chr5	178032031	178032032	-	0	NA	"intron (NM_020666, intron 11 of 12)"	AluSx1|SINE|Alu	14475	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr11.915960.-	chr11	915960	915961	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	902	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chrX.53111683.+	chrX	53111683	53111684	+	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	141	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr17.1532203.-	chr17	1532203	1532204	-	0	NA	promoter-TSS (NM_152346)	promoter-TSS (NM_152346)	73	NM_152346	124935	Hs.160550	NM_152346	ENSG00000167703	SLC43A2	LAT4	"solute carrier family 43, member 2"	protein-coding
chr19.54099166.-	chr19	54099166	54099167	-	0	NA	Intergenic	AluSq2|SINE|Alu	-7585	NR_002938	284379	Hs.631571	NR_002938	ENSG00000268864	LOC284379	-	"solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene"	pseudo
chr9.10974549.+	chr9	10974549	10974550	+	0	NA	Intergenic	L1PBa|LINE|L1	-361826	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr16.11746955.-	chr16	11746955	11746956	-	0	NA	Intergenic	AluSx1|SINE|Alu	15334	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr19.18180436.-	chr19	18180436	18180437	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17261	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr9.36596669.+	chr9	36596669	36596670	+	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	23810	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr13.112726517.+	chr13	112726517	112726518	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4604	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr3.49047708.+	chr3	49047708	49047709	+	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	3071	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr22.30781335.+	chr22	30781335	30781336	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1967	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr1.92206206.+	chr1	92206206	92206207	+	0	NA	"intron (NR_036634, intron 5 of 17)"	AluSx1|SINE|Alu	145630	NM_003243	7049	Hs.735919	NM_001195683	ENSG00000069702	TGFBR3	BGCAN|betaglycan	"transforming growth factor, beta receptor III"	protein-coding
chr1.217314045.+	chr1	217314045	217314046	+	0	NA	Intergenic	Intergenic	-2948	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr4.17513784.+	chr4	17513784	17513785	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	73	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr2.38825103.-	chr2	38825103	38825104	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5075	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr9.140149785.-	chr9	140149785	140149786	-	0	NA	promoter-TSS (NM_015456)	promoter-TSS (NM_015456)	-26	NM_015456	25920	Hs.521809	NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
chr1.90038745.+	chr1	90038745	90038746	+	0	NA	"intron (NM_001134476, intron 5 of 7)"	AluY|SINE|Alu	14473	NM_015350	23507	Hs.741594	NM_001134476	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	"leucine rich repeat containing 8 family, member B"	protein-coding
chr17.19786174.-	chr17	19786174	19786175	-	0	NA	Intergenic	AluY|SINE|Alu	14935	NM_001142610	9706	Hs.168762	NM_001142610	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51-like kinase 2 (C. elegans)	protein-coding
chr7.5557985.+	chr7	5557985	5557986	+	0	NA	Intergenic	AluYc|SINE|Alu	-4586	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr4.134408519.+	chr4	134408519	134408520	+	0	NA	Intergenic	AluY|SINE|Alu	338049	NM_020815	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr1.54966456.-	chr1	54966456	54966457	-	0	NA	Intergenic	AluSq|SINE|Alu	47351	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chrX.152723213.-	chrX	152723213	152723214	-	0	NA	"intron (NM_017518, intron 4 of 9)"	"intron (NM_017518, intron 4 of 9)"	11268	NM_080701	11219	Hs.644635	NM_080701	ENSG00000183479	TREX2	-	three prime repair exonuclease 2	protein-coding
chr6.12012494.+	chr6	12012494	12012495	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-230	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr18.19630086.+	chr18	19630086	19630087	+	0	NA	Intergenic	AluY|SINE|Alu	-119318	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr4.801290.+	chr4	801290	801291	+	0	NA	"intron (NM_006651, intron 2 of 3)"	AluSq|SINE|Alu	18655	NM_006651	10815	Hs.478930	NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1	complexin 1	protein-coding
chr21.14527096.-	chr21	14527096	14527097	-	0	NA	Intergenic	AluSc8|SINE|Alu	-116609	NR_026916	149992	Hs.579474	NR_026916		ANKRD30BP2	C21orf99|CT85|CTSP-1|CTSP1	ankyrin repeat domain 30B pseudogene 2	pseudo
chr7.5322957.+	chr7	5322957	5322958	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	396	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr14.106285445.-	chr14	106285445	106285446	-	0	NA	Intergenic	Intergenic	98393	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr13.77954519.-	chr13	77954519	77954520	-	0	NA	Intergenic	AluSc|SINE|Alu	53342	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr17.7561711.+	chr17	7561711	7561712	+	0	NA	TTS (NM_001678)	TTS (NM_001678)	7457	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chrX.93693252.+	chrX	93693252	93693253	+	0	NA	Intergenic	AluY|SINE|Alu	764240	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chr18.24748327.-	chr18	24748327	24748328	-	0	NA	"intron (NM_001256316, intron 1 of 4)"	AluY|SINE|Alu	-16975	NM_001256316	83539	Hs.706552	NM_001256316	ENSG00000154080	CHST9	GALNAC4ST-2	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chr3.140660477.+	chr3	140660477	140660478	+	0	NA	promoter-TSS (NM_001104647)	promoter-TSS (NM_001104647)	-185	NM_018155	55186	Hs.144130	NM_001104647	ENSG00000114120	SLC25A36	PNC2	"solute carrier family 25 (pyrimidine nucleotide carrier ), member 36"	protein-coding
chr20.13660599.+	chr20	13660599	13660600	+	0	NA	Intergenic	AluY|SINE|Alu	-41016	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr3.124468910.+	chr3	124468910	124468911	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19697	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr17.65335504.+	chr17	65335504	65335505	+	0	NA	Intergenic	AluSx|SINE|Alu	27217	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr5.138243828.+	chr5	138243828	138243829	+	0	NA	"intron (NM_001903, intron 10 of 17)"	AluSx1|SINE|Alu	-32771	NM_015564	26045	Hs.656653	NM_015564	ENSG00000146006	LRRTM2	-	leucine rich repeat transmembrane neuronal 2	protein-coding
chr18.34900225.-	chr18	34900225	34900226	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	AluY|SINE|Alu	-245775	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr12.131551505.+	chr12	131551505	131551506	+	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	-98051	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chrX.53123348.+	chrX	53123348	53123349	+	0	NA	Intergenic	CpG	11806	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr21.33280000.-	chr21	33280000	33280001	-	0	NA	"intron (NM_014586, intron 1 of 10)"	L1MB2|LINE|L1	-34372	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr1.6009861.+	chr1	6009861	6009862	+	0	NA	"intron (NM_015102, intron 7 of 29)"	"intron (NM_015102, intron 7 of 29)"	-42497	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr22.41715331.-	chr22	41715331	41715332	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17824	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chrM.127.-	chrM	127	128	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr7.1071474.-	chr7	1071474	1071475	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	8812	NR_029898	442907		NR_029898		MIR339	MIRN339|hsa-mir-339	microRNA 339	miscRNA
chr7.38566132.+	chr7	38566132	38566133	+	0	NA	"intron (NM_139316, intron 2 of 19)"	AluSz6|SINE|Alu	105035	NM_139316	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
chr10.76198275.-	chr10	76198275	76198276	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262028	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr5.25535451.+	chr5	25535451	25535452	+	0	NA	Intergenic	AluY|SINE|Alu	-694759	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr7.139162660.-	chr7	139162660	139162661	-	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	-5797	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr3.86427486.-	chr3	86427486	86427487	-	0	NA	Intergenic	AluY|SINE|Alu	-62875	NR_046939	100873773		NR_046939	ENSG00000252055	RNU6-69	-	"RNA, U6 small nuclear 69"	snRNA
chr14.56047469.-	chr14	56047469	56047470	-	0	NA	promoter-TSS (NR_027123)	promoter-TSS (NR_027123)	-544	NR_073128	3895	Hs.509414	NM_001271014	ENSG00000126777	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1 (kinesin receptor)	protein-coding
chr20.50261063.+	chr20	50261063	50261064	+	0	NA	"intron (NM_006045, intron 14 of 27)"	AluY|SINE|Alu	-81693	NM_001258294	4773	Hs.744148	NM_001136021	ENSG00000101096	NFATC2	NFAT1|NFATP	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2"	protein-coding
chr13.114001068.-	chr13	114001068	114001069	-	0	NA	"intron (NM_024719, intron 4 of 7)"	"intron (NM_024719, intron 4 of 7)"	-17395	NM_024719	79774	Hs.170904	NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
chr5.122861590.+	chr5	122861590	122861591	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13797	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr16.31932495.+	chr16	31932495	31932496	+	0	NA	Intergenic	AluY|SINE|Alu	47416	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr16.790714.-	chr16	790714	790715	-	0	NA	"intron (NM_022493, intron 1 of 10)"	CpG	-283	NM_022493	64428	Hs.513247	NM_022493	ENSG00000103245	NARFL	HPRN|IOP1|LET1L|PRN	nuclear prelamin A recognition factor-like	protein-coding
chr13.28528579.-	chr13	28528579	28528580	-	0	NA	Intergenic	CpG	-9236	NR_002162	432369	Hs.574118	NR_002162	ENSG00000180389	ATP5EP2	-	"ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2"	pseudo
chr19.18057760.+	chr19	18057760	18057761	+	0	NA	Intergenic	AluSx|SINE|Alu	-4351	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr20.57575072.+	chr20	57575072	57575073	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7237	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr13.21766677.-	chr13	21766677	21766678	-	0	NA	Intergenic	AluY|SINE|Alu	15936	NM_145061	221150	Hs.88523	NM_001166017	ENSG00000165480	SKA3	C13orf3|RAMA1	spindle and kinetochore associated complex subunit 3	protein-coding
chr6.167607734.-	chr6	167607734	167607735	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23653	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr19.34538913.+	chr19	34538913	34538914	+	0	NA	Intergenic	AluYc|SINE|Alu	-124439	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr18.29434833.-	chr18	29434833	29434834	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88258	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr15.100514143.+	chr15	100514143	100514144	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-167011	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr1.212371357.-	chr1	212371357	212371358	-	0	NA	Intergenic	AluY|SINE|Alu	87522	NM_006243	5525	Hs.744012	NM_001199756	ENSG00000066027	PPP2R5A	B56A|PR61A	"protein phosphatase 2, regulatory subunit B', alpha"	protein-coding
chr1.224671294.+	chr1	224671294	224671295	+	0	NA	Intergenic	AluSz|SINE|Alu	-49293	NM_001115113	80232	Hs.729289	NM_001115113	ENSG00000162923	WDR26	CDW2|GID7|MIP2	WD repeat domain 26	protein-coding
chr13.31023961.-	chr13	31023961	31023962	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16120	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr8.249087.-	chr8	249087	249088	-	0	NA	Intergenic	Intergenic	-66703	NM_001042416	169270	Hs.591388	NM_001042415	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
chr16.88237105.-	chr16	88237105	88237106	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-233481	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr1.239693298.-	chr1	239693298	239693299	-	0	NA	Intergenic	AluY|SINE|Alu	99075	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	"cholinergic receptor, muscarinic 3"	protein-coding
chrX.40029652.-	chrX	40029652	40029653	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6930	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr6.170580912.-	chr6	170580912	170580913	-	0	NA	Intergenic	CpG	9255	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chrX.100277469.-	chrX	100277469	100277470	-	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	-29636	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr2.1554807.-	chr2	1554807	1554808	-	0	NA	Intergenic	Intergenic	-136627	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr4.28187428.-	chr4	28187428	28187429	-	0	NA	Intergenic	AluY|SINE|Alu	633776	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	miscRNA
chr4.40571721.+	chr4	40571721	40571722	+	0	NA	"intron (NM_001098634, intron 1 of 6)"	AluY|SINE|Alu	-53731	NM_019027	54502	Hs.518727	NM_001098634	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
chr3.189635263.-	chr3	189635263	189635264	-	0	NA	Intergenic	AluSz6|SINE|Alu	-87552	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	miscRNA
chr6.170055429.+	chr6	170055429	170055430	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46730	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr10.81319175.+	chr10	81319175	81319176	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	988	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr3.37052332.+	chr3	37052332	37052333	+	0	NA	"intron (NM_001258271, intron 6 of 16)"	AluSx|SINE|Alu	17064	NM_001167618	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	"mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)"	protein-coding
chr17.3317550.-	chr17	3317550	3317551	-	0	NA	Intergenic	AluSc8|SINE|Alu	6312	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr2.92028137.-	chr2	92028137	92028138	-	0	NA	Intergenic	CpG	-64769	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
chr19.23432233.-	chr19	23432233	23432234	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-939	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr8.137106577.+	chr8	137106577	137106578	+	0	NA	Intergenic	AluY|SINE|Alu	636861	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	"KH domain containing, RNA binding, signal transduction associated 3"	protein-coding
chrX.88129122.+	chrX	88129122	88129123	+	0	NA	Intergenic	AluY|SINE|Alu	126896	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr16.22987681.-	chr16	22987681	22987682	-	0	NA	Intergenic	AluSc8|SINE|Alu	-161821	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr7.1474524.+	chr7	1474524	1474525	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24585	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr2.233477430.+	chr2	233477430	233477431	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	L1M4|LINE|L1	6663	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr1.32122143.+	chr1	32122143	32122144	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11305	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr20.39788792.+	chr20	39788792	39788793	+	0	NA	"exon (NM_182811, exon 4 of 32)"	"exon (NM_182811, exon 4 of 32)"	22631	NM_002660	5335	Hs.268177	NM_002660	ENSG00000124181	PLCG1	NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	"phospholipase C, gamma 1"	protein-coding
chr1.21671983.-	chr1	21671983	21671984	-	0	NA	promoter-TSS (NM_001113348)	promoter-TSS (NM_001113348)	-51	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr4.83939816.-	chr4	83939816	83939817	-	0	NA	Intergenic	AluSq2|SINE|Alu	5776	NM_001115007	132660	Hs.96952	NM_001115007	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120	lin-54 homolog (C. elegans)	protein-coding
chr16.73461749.-	chr16	73461749	73461750	-	0	NA	Intergenic	AluSg|SINE|Alu	-41045	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr9.88491181.+	chr9	88491181	88491182	+	0	NA	Intergenic	AluYc|SINE|Alu	-64876	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr17.12315411.-	chr17	12315411	12315412	-	0	NA	Intergenic	AluSx3|SINE|Alu	137874	NR_034145	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr12.51819084.+	chr12	51819084	51819085	+	0	NA	"5' UTR (NM_001258403, exon 1 of 17)"	"5' UTR (NM_001258403, exon 1 of 17)"	183	NM_001258403	9498	Hs.4749	NM_001039960	ENSG00000050438	SLC4A8	NBC3|NDCBE	"solute carrier family 4, sodium bicarbonate cotransporter, member 8"	protein-coding
chr1.175385907.+	chr1	175385907	175385908	+	0	NA	"intron (NM_003285, intron 2 of 22)"	AluY|SINE|Alu	-223678	NM_001162894	9674	Hs.518138	NM_001162893	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
chr17.78559334.+	chr17	78559334	78559335	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40709	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr3.102974046.-	chr3	102974046	102974047	-	0	NA	Intergenic	SVA_D|Other|Other	-820187	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr7.118277728.+	chr7	118277728	118277729	+	0	NA	Intergenic	AluY|SINE|Alu	413016	NM_019644	56311	Hs.729340	NM_001077708	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
chr20.19888886.-	chr20	19888886	19888887	-	0	NA	"intron (NM_018993, intron 1 of 10)"	AluY|SINE|Alu	-18676	NM_018993	54453	Hs.472270	NM_001242581	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
chr8.104645098.-	chr8	104645098	104645099	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132122	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr19.59046123.+	chr19	59046123	59046124	+	0	NA	Intergenic	AluY|SINE|Alu	-9713	NM_005762	10155	Hs.467408	NM_005762	ENSG00000130726	TRIM28	KAP1|RNF96|TF1B|TIF1B	tripartite motif containing 28	protein-coding
chr16.632074.+	chr16	632074	632075	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7283	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr10.32358180.+	chr10	32358180	32358181	+	0	NA	Intergenic	AluSg7|SINE|Alu	-12809	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr14.23706423.-	chr14	23706423	23706424	-	0	NA	Intergenic	AluSz|SINE|Alu	-48886	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr12.112620063.-	chr12	112620063	112620064	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56714	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr1.21893027.-	chr1	21893027	21893028	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57169	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr16.1807905.+	chr16	1807905	1807906	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13805	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr7.450622.-	chr7	450622	450623	-	0	NA	Intergenic	Intergenic	-31231	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr14.21609973.-	chr14	21609973	21609974	-	0	NA	Intergenic	AluY|SINE|Alu	-14211	NM_001004731	390445	Hs.553768	NM_001004731	ENSG00000169327	OR5AU1	OR14-38	"olfactory receptor, family 5, subfamily AU, member 1"	protein-coding
chr3.172180206.-	chr3	172180206	172180207	-	0	NA	Intergenic	AluY|SINE|Alu	13960	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr5.1466234.-	chr5	1466234	1466235	-	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	20691	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr11.3224531.+	chr11	3224531	3224532	+	0	NA	Intergenic	CpG	-15031	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr17.1389858.-	chr17	1389858	1389859	-	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	807	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr3.138668662.+	chr3	138668662	138668663	+	0	NA	"intron (NM_001040061, intron 2 of 2)"	CpG	2586	NM_001040061	401089	Hs.591303	NM_001040061	ENSG00000206262	C3orf72	-	chromosome 3 open reading frame 72	protein-coding
chr19.5237901.+	chr19	5237901	5237902	+	0	NA	"intron (NM_130854, intron 10 of 32)"	"intron (NM_130854, intron 10 of 32)"	102913	NM_002850	5802	Hs.644384	NM_002850	ENSG00000105426	PTPRS	PTPSIGMA	"protein tyrosine phosphatase, receptor type, S"	protein-coding
chr12.7317114.-	chr12	7317114	7317115	-	0	NA	Intergenic	AluSx1|SINE|Alu	24645	NM_001131026	5830	Hs.567327	NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1	peroxisomal biogenesis factor 5	protein-coding
chr20.6103534.+	chr20	6103534	6103535	+	0	NA	"5' UTR (NM_017671, exon 1 of 15)"	"5' UTR (NM_017671, exon 1 of 15)"	657	NM_017671	55612	Hs.472054	NM_017671	ENSG00000101311	FERMT1	C20orf42|DTGCU2|KIND1|UNC112A|URP1	fermitin family member 1	protein-coding
chr13.50177141.-	chr13	50177141	50177142	-	0	NA	Intergenic	AluY|SINE|Alu	17422	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr16.31449029.-	chr16	31449029	31449030	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5319	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr7.40164646.-	chr7	40164646	40164647	-	0	NA	Intergenic	AluY|SINE|Alu	-9605	NM_138701	136647	Hs.654989	NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20	M-phase specific PLK1 interacting protein	protein-coding
chr2.43707915.+	chr2	43707915	43707916	+	0	NA	"intron (NM_022065, intron 26 of 37)"	AluSx3|SINE|Alu	115198	NM_001083953	63892	Hs.369592	NM_001083953	ENSG00000115970	THADA	GITA	thyroid adenoma associated	protein-coding
chr5.118604623.+	chr5	118604623	118604624	+	0	NA	"intron (NM_001077654, intron 1 of 1)"	CpG	205	NM_001077654	25816	Hs.656274	NM_001077654		TNFAIP8	GG2-1|MDC-3.13|SCC-S2|SCCS2	"tumor necrosis factor, alpha-induced protein 8"	protein-coding
chr3.54149347.-	chr3	54149347	54149348	-	0	NA	Intergenic	AluSg|SINE|Alu	7346	NM_018398	55799	Hs.656687	NM_018398	ENSG00000157445	CACNA2D3	HSA272268	"calcium channel, voltage-dependent, alpha 2/delta subunit 3"	protein-coding
chr12.49035858.+	chr12	49035858	49035859	+	0	NA	Intergenic	SVA_A|Other|Other	12443	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr21.34914923.+	chr21	34914923	34914924	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	272	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr10.75069575.-	chr10	75069575	75069576	-	0	NA	"intron (NM_145170, intron 13 of 27)"	AluSx|SINE|Alu	-49042	NM_145170	118491	Hs.720588	NM_145170	ENSG00000156042	TTC18	-	tetratricopeptide repeat domain 18	protein-coding
chr19.58250072.+	chr19	58250072	58250073	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8092	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr17.4708739.-	chr17	4708739	4708740	-	0	NA	Intergenic	AluSx|SINE|Alu	1657	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr16.31996252.+	chr16	31996252	31996253	+	0	NA	Intergenic	AluY|SINE|Alu	111173	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr6.170055418.+	chr6	170055418	170055419	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46741	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr17.43255874.-	chr17	43255874	43255875	-	0	NA	Intergenic	AluY|SINE|Alu	-17610	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr1.101786724.-	chr1	101786724	101786725	-	0	NA	Intergenic	AluY|SINE|Alu	-19727	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr10.43563324.+	chr10	43563324	43563325	+	0	NA	Intergenic	Intergenic	-9193	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr2.233791848.+	chr2	233791848	233791849	+	0	NA	"exon (NM_001114090, exon 2 of 13)"	"exon (NM_001114090, exon 2 of 13)"	1013	NM_001114090	25791	Hs.97316	NM_001114090	ENSG00000066248	NGEF	ARHGEF27|EPHEXIN	neuronal guanine nucleotide exchange factor	protein-coding
chr14.87514409.+	chr14	87514409	87514410	+	0	NA	Intergenic	AluY|SINE|Alu	142287	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LOC283585	-	uncharacterized LOC283585	miscRNA
chrX.9366122.-	chrX	9366122	9366123	-	0	NA	Intergenic	AluY|SINE|Alu	65213	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr15.78913549.-	chr15	78913549	78913550	-	0	NA	promoter-TSS (NM_000743)	promoter-TSS (NM_000743)	-88	NM_001166694	1136	Hs.89605	NM_000743	ENSG00000080644	CHRNA3	LNCR2|NACHRA3|PAOD2	"cholinergic receptor, nicotinic, alpha 3 (neuronal)"	protein-coding
chr9.140083596.+	chr9	140083596	140083597	+	0	NA	promoter-TSS (NM_013366)	promoter-TSS (NM_013366)	-539	NM_013366	29882	Hs.533262	NM_013366	ENSG00000176248	ANAPC2	APC2|RP11-350O14.5	anaphase promoting complex subunit 2	protein-coding
chr5.22207061.+	chr5	22207061	22207062	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64600	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr20.61021250.-	chr20	61021250	61021251	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18621	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr15.100710023.+	chr15	100710023	100710024	+	0	NA	"intron (NM_139057, intron 8 of 21)"	"intron (NM_139057, intron 8 of 21)"	172160	NM_139057	170691	Hs.513200	NM_139057	ENSG00000140470	ADAMTS17	-	"ADAM metallopeptidase with thrombospondin type 1 motif, 17"	protein-coding
chr11.3224479.+	chr11	3224479	3224480	+	0	NA	Intergenic	Intergenic	-15083	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr1.154218112.-	chr1	154218112	154218113	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	"intron (NM_001127320, intron 10 of 24)"	-24787	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr18.2377789.+	chr18	2377789	2377790	+	0	NA	Intergenic	AluSg7|SINE|Alu	193700	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr17.66332142.+	chr17	66332142	66332143	+	0	NA	"intron (NM_001267727, intron 2 of 11)"	AluSx1|SINE|Alu	44506	NM_001267727	22901	Hs.437249	NM_001267727		ARSG	-	arylsulfatase G	protein-coding
chr20.19431512.+	chr20	19431512	19431513	+	0	NA	"intron (NM_020689, intron 2 of 16)"	AluSz|SINE|Alu	-166272	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	miscRNA
chr4.55034928.-	chr4	55034928	55034929	-	0	NA	Intergenic	AluSx3|SINE|Alu	60336	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr21.32687769.-	chr21	32687769	32687770	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243521	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chrX.144903000.+	chrX	144903000	144903001	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	134	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr9.21968309.+	chr9	21968309	21968310	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1171	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr2.208031309.-	chr2	208031309	208031310	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-271	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr14.102101586.+	chr14	102101586	102101587	+	0	NA	Intergenic	CpG	73898	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr8.1205520.+	chr8	1205520	1205521	+	0	NA	Intergenic	Intergenic	45307	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr12.100804197.+	chr12	100804197	100804198	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53340	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr17.4926506.-	chr17	4926506	4926507	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12221	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr9.139417554.+	chr9	139417554	139417555	+	0	NA	"exon (NM_017617, exon 4 of 34)"	"exon (NM_017617, exon 4 of 34)"	-3476	NR_039820	100616242		NR_039820		MIR4673	-	microRNA 4673	miscRNA
chr9.138663316.+	chr9	138663316	138663317	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69285	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr16.88387010.+	chr16	88387010	88387011	+	0	NA	Intergenic	L2b|LINE|L2	-106869	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chrX.23801557.-	chrX	23801557	23801558	-	0	NA	"intron (NR_027783, intron 1 of 6)"	CpG	-282	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr10.134216465.+	chr10	134216465	134216466	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5763	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr20.57575059.-	chr20	57575059	57575060	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7250	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr17.26336779.-	chr17	26336779	26336780	-	0	NA	Intergenic	AluSz|SINE|Alu	32909	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr11.2213947.-	chr11	2213947	2213948	-	0	NA	Intergenic	Intergenic	-19654	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr1.55505942.-	chr1	55505942	55505943	-	0	NA	"intron (NM_174936, intron 1 of 11)"	CpG	-793	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr16.6394239.-	chr16	6394239	6394240	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluSq10|SINE|Alu	-325107	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr20.33283447.+	chr20	33283447	33283448	+	0	NA	Intergenic	AluY|SINE|Alu	-8701	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr14.105255202.-	chr14	105255202	105255203	-	0	NA	"intron (NM_001014432, intron 3 of 14)"	"intron (NM_001014432, intron 3 of 14)"	-4736	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chrX.118871976.+	chrX	118871976	118871977	+	0	NA	Intergenic	AluYc|SINE|Alu	-20600	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr5.2751864.-	chr5	2751864	2751865	-	0	NA	promoter-TSS (NM_178569)	promoter-TSS (NM_178569)	95	NM_001134222	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr14.105242465.-	chr14	105242465	105242466	-	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	-17473	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr13.50138585.-	chr13	50138585	50138586	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21134	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr22.43238143.+	chr22	43238143	43238144	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15265	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr2.43253970.+	chr2	43253970	43253971	+	0	NA	Intergenic	Intergenic	199775	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr1.121485081.-	chr1	121485081	121485082	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-224171	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr2.60924324.-	chr2	60924324	60924325	-	0	NA	Intergenic	AluSg|SINE|Alu	59041	NM_022894	64895	Hs.387471	NM_022894		PAPOLG	-	poly(A) polymerase gamma	protein-coding
chr10.8079433.+	chr10	8079433	8079434	+	0	NA	Intergenic	Intergenic	16014	NR_024255	399717	Hs.669736	NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	miscRNA
chr3.78390292.-	chr3	78390292	78390293	-	0	NA	Intergenic	AluY|SINE|Alu	-678317	NM_001145845	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr2.47660682.-	chr2	47660682	47660683	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-30476	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr16.85681561.-	chr16	85681561	85681562	-	0	NA	"intron (NM_014615, intron 2 of 15)"	"intron (NM_014615, intron 2 of 15)"	-34637	NM_014615	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr20.5616788.+	chr20	5616788	5616789	+	0	NA	Intergenic	MER41A|LTR|ERV1	-25116	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	protein-coding
chr2.34289871.+	chr2	34289871	34289872	+	0	NA	Intergenic	AluSz|SINE|Alu	-336587	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr17.36083185.-	chr17	36083185	36083186	-	0	NA	"intron (NM_001165923, intron 4 of 8)"	AluY|SINE|Alu	-21911	NM_000458	6928	Hs.191144	NM_000458	ENSG00000108753	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
chr1.33938036.+	chr1	33938036	33938037	+	0	NA	promoter-TSS (NM_145238)	promoter-TSS (NM_145238)	-196	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
chr17.65843573.-	chr17	65843573	65843574	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21793	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr1.32122079.+	chr1	32122079	32122080	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11241	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr7.5334591.-	chr7	5334591	5334592	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12030	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr13.21363801.+	chr13	21363801	21363802	+	0	NA	"intron (NM_022459, intron 19 of 22)"	AluY|SINE|Alu	-15744	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
chr1.32731830.-	chr1	32731830	32731831	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7882	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr13.111339779.-	chr13	111339779	111339780	-	0	NA	"intron (NM_024537, intron 5 of 14)"	AluSx3|SINE|Alu	-18701	NM_024537	79587	Hs.508725	NM_024537	ENSG00000134905	CARS2	-	"cysteinyl-tRNA synthetase 2, mitochondrial (putative)"	protein-coding
chr3.99923767.-	chr3	99923767	99923768	-	0	NA	Intergenic	AluSq|SINE|Alu	-19099	NR_028358	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30C	CDC50C	transmembrane protein 30C	pseudo
chr19.1252676.-	chr19	1252676	1252677	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4124	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chrX.19498768.-	chrX	19498768	19498769	-	0	NA	"intron (NM_001001671, intron 3 of 28)"	AluSx1|SINE|Alu	-34611	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr14.61123712.-	chr14	61123712	61123713	-	0	NA	Intergenic	CpG	7557	NM_005982	6495	Hs.633506	NM_005982		SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
chrX.70493508.-	chrX	70493508	70493509	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9534	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr12.132353172.-	chr12	132353172	132353173	-	0	NA	Intergenic	Intergenic	26107	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr12.117737203.-	chr12	117737203	117737204	-	0	NA	"intron (NM_000620, intron 3 of 28)"	AluY|SINE|Alu	-5654	NM_001204213	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr16.74075838.-	chr16	74075838	74075839	-	0	NA	Intergenic	AluY|SINE|Alu	254835	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 7"	protein-coding
chr16.88545399.+	chr16	88545399	88545400	+	0	NA	"intron (NM_153813, intron 1 of 9)"	"intron (NM_153813, intron 1 of 9)"	10073	NR_049821	100847057		NR_049821		MIR5189	-	microRNA 5189	miscRNA
chr19.42361820.+	chr19	42361820	42361821	+	0	NA	Intergenic	AluY|SINE|Alu	-2168	NM_001022	6223	Hs.438429	NM_001022		RPS19	DBA|DBA1|S19	ribosomal protein S19	protein-coding
chr11.64323305.-	chr11	64323305	64323306	-	0	NA	"5' UTR (NM_018484, exon 1 of 10)"	"5' UTR (NM_018484, exon 1 of 10)"	-207	NM_018484	55867	Hs.220844	NM_018484	ENSG00000168065	SLC22A11	OAT4|hOAT4	"solute carrier family 22 (organic anion/urate transporter), member 11"	protein-coding
chr9.16766037.+	chr9	16766037	16766038	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	104749	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr16.12163792.+	chr16	12163792	12163793	+	0	NA	"intron (NM_032167, intron 10 of 20)"	AluYc|SINE|Alu	93190	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr3.84566233.+	chr3	84566233	84566234	+	0	NA	Intergenic	AluY|SINE|Alu	352493	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr18.70534381.+	chr18	70534381	70534382	+	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	429	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr1.65532957.-	chr1	65532957	65532958	-	0	NA	Intergenic	CpG	8766	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr7.150109308.+	chr7	150109308	150109309	+	0	NA	"non-coding (NR_027237, exon 3 of 3)"	"non-coding (NR_027237, exon 3 of 3)"	6468	NR_027237	728743	Hs.650365	NR_027237		LOC728743	-	zinc finger protein pseudogene	pseudo
chr2.66940721.+	chr2	66940721	66940722	+	0	NA	Intergenic	AluY|SINE|Alu	278189	NM_002398	4211	Hs.603755	NM_002398	ENSG00000143995	MEIS1	-	Meis homeobox 1	protein-coding
chr11.68723010.+	chr11	68723010	68723011	+	0	NA	Intergenic	MIRb|SINE|MIR	25445	NM_198923	116512	Hs.527802	NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	"MAS-related GPR, member D"	protein-coding
chr6.1614658.+	chr6	1614658	1614659	+	0	NA	TTS (NM_001453)	TTS (NM_001453)	3977	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr6.160985713.-	chr6	160985713	160985714	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53557	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr11.130241838.+	chr11	130241838	130241839	+	0	NA	Intergenic	AluSc8|SINE|Alu	56701	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr22.43238144.-	chr22	43238144	43238145	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15264	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr12.105389722.+	chr12	105389722	105389723	+	0	NA	Intergenic	AluY|SINE|Alu	9624	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr16.341060.+	chr16	341060	341061	+	0	NA	"intron (NM_181050, intron 8 of 9)"	"intron (NM_181050, intron 8 of 9)"	7942	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr1.10711062.+	chr1	10711062	10711063	+	0	NA	"exon (NM_017766, exon 12 of 16)"	"exon (NM_017766, exon 12 of 16)"	145671	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr10.17179595.-	chr10	17179595	17179596	-	0	NA	Intergenic	AluSz|SINE|Alu	7779	NM_001081	8029	Hs.166206	NM_001081	ENSG00000107611	CUBN	IFCR|MGA1|gp280	cubilin (intrinsic factor-cobalamin receptor)	protein-coding
chr1.121484134.+	chr1	121484134	121484135	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	223224	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr3.8721264.-	chr3	8721264	8721265	-	0	NA	Intergenic	Intergenic	27500	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr17.1226119.+	chr17	1226119	1226120	+	0	NA	Intergenic	AluSx|SINE|Alu	43162	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr12.96826020.-	chr12	96826020	96826021	-	0	NA	Intergenic	AluSg|SINE|Alu	31654	NM_001170464	5128	Hs.506415	NM_001170464	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
chr10.123872389.+	chr10	123872389	123872390	+	0	NA	"intron (NM_206862, intron 5 of 22)"	CpG	-50716	NM_206860	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr6.18371806.-	chr6	18371806	18371807	-	0	NA	Intergenic	AluSx1|SINE|Alu	15775	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
chr3.101395178.-	chr3	101395178	101395179	-	0	NA	promoter-TSS (NR_024407)	promoter-TSS (NR_024407)	96	NR_024407	100009676	Hs.743292	NR_024407		LOC100009676	-	uncharacterized LOC100009676	miscRNA
chr13.88877226.+	chr13	88877226	88877227	+	0	NA	Intergenic	AluY|SINE|Alu	-315858	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr22.39040980.+	chr22	39040980	39040981	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11654	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr11.130318608.+	chr11	130318608	130318609	+	0	NA	promoter-TSS (NM_139055)	promoter-TSS (NM_139055)	-261	NM_139055	170689	Hs.534221	NM_139055	ENSG00000166106	ADAMTS15	-	"ADAM metallopeptidase with thrombospondin type 1 motif, 15"	protein-coding
chr17.7951739.-	chr17	7951739	7951740	-	0	NA	"exon (NM_001039131, exon 12 of 12)"	"exon (NM_001039131, exon 12 of 12)"	-9381	NM_001141	247	Hs.111256	NM_001039130	ENSG00000179593	ALOX15B	15-LOX-2	"arachidonate 15-lipoxygenase, type B"	protein-coding
chr2.74273530.+	chr2	74273530	74273531	+	0	NA	promoter-TSS (NM_144993)	promoter-TSS (NM_144993)	80	NM_144993	200424	Hs.516107	NM_144993		TET3	-	tet methylcytosine dioxygenase 3	protein-coding
chr16.85267973.-	chr16	85267973	85267974	-	0	NA	Intergenic	MIR|SINE|MIR	48591	NR_038859	197196	Hs.679002	NR_038859	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	miscRNA
chr9.120507375.-	chr9	120507375	120507376	-	0	NA	Intergenic	CpG	-40922	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr7.5558068.+	chr7	5558068	5558069	+	0	NA	Intergenic	AluYc|SINE|Alu	-4669	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr19.18075318.-	chr19	18075318	18075319	-	0	NA	"intron (NM_002248, intron 2 of 10)"	"intron (NM_002248, intron 2 of 10)"	-13207	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr11.64120585.-	chr11	64120585	64120586	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6040	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr9.33511015.+	chr9	33511015	33511016	+	0	NA	"non-coding (NR_003667, exon 1 of 5)"	"non-coding (NR_003667, exon 1 of 5)"	149	NR_003667	441394	Hs.521441	NR_003667		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1	pseudo
chr19.35418169.-	chr19	35418169	35418170	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-362	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr1.40953652.-	chr1	40953652	40953653	-	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	-10350	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr17.77198163.+	chr17	77198163	77198164	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	127144	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr14.23706394.-	chr14	23706394	23706395	-	0	NA	Intergenic	AluSz|SINE|Alu	-48915	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr3.107646769.-	chr3	107646769	107646770	-	0	NA	"non-coding (NR_015394, exon 3 of 3)"	"non-coding (NR_015394, exon 3 of 3)"	-44717	NR_015394	285205	Hs.737218	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	miscRNA
chr3.179526631.+	chr3	179526631	179526632	+	0	NA	"intron (NM_001256751, intron 11 of 13)"	AluY|SINE|Alu	155698	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
chr10.131739679.+	chr10	131739679	131739680	+	0	NA	"intron (NM_001005463, intron 6 of 15)"	"intron (NM_001005463, intron 6 of 15)"	22412	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr16.3778320.-	chr16	3778320	3778321	-	0	NA	"exon (NM_004380, exon 31 of 31)"	"exon (NM_004380, exon 31 of 31)"	10722	NM_001272049	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr9.98638361.-	chr9	98638361	98638362	-	0	NA	promoter-TSS (NR_023389)	promoter-TSS (NR_023389)	102	NR_023390	100128782	Hs.494549	NR_023389	ENSG00000175611	LINC00476	C9orf130|NAG11	long intergenic non-protein coding RNA 476	miscRNA
chr16.4051450.-	chr16	4051450	4051451	-	0	NA	"intron (NM_001116, intron 3 of 10)"	L1MD3|LINE|L1	-114736	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr16.58810878.-	chr16	58810878	58810879	-	0	NA	Intergenic	AluSq4|SINE|Alu	42632	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr18.33543834.+	chr18	33543834	33543835	+	0	NA	Intergenic	AluY|SINE|Alu	-8754	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr1.109995551.+	chr1	109995551	109995552	+	0	NA	Intergenic	AluY|SINE|Alu	-13549	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chrX.129231004.-	chrX	129231004	129231005	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13471	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr21.47838734.-	chr21	47838734	47838735	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40128	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr4.989217.+	chr4	989217	989218	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-1993	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr19.267140.+	chr19	267140	267141	+	0	NA	Intergenic	CpG	24029	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr14.102954940.+	chr14	102954940	102954941	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21188	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr15.37172902.+	chr15	37172902	37172903	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5832	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr3.164119677.+	chr3	164119677	164119678	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676606	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr2.106682181.+	chr2	106682181	106682182	+	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	68	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr9.8857467.-	chr9	8857467	8857468	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123521	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr6.53212883.+	chr6	53212883	53212884	+	0	NA	"intron (NM_001242831, intron 1 of 2)"	CpG	1094	NM_021814	60481	Hs.743970	NM_001242828	ENSG00000012660	ELOVL5	HELO1|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
chr17.30284420.-	chr17	30284420	30284421	-	0	NA	"intron (NM_015355, intron 4 of 15)"	AluSx|SINE|Alu	-20376	NM_015355	23512	Hs.744174	NM_015355	ENSG00000178691	SUZ12	CHET9|JJAZ1	suppressor of zeste 12 homolog (Drosophila)	protein-coding
chr11.41260613.+	chr11	41260613	41260614	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220573	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr5.78890151.-	chr5	78890151	78890152	-	0	NA	Intergenic	AluY|SINE|Alu	18092	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr8.6875633.-	chr8	6875633	6875634	-	0	NA	"intron (NM_004084, intron 1 of 2).3"	"intron (NM_004084, intron 1 of 2).3"	-183	NM_005217	1668	Hs.654448	NM_005217	ENSG00000239839	DEFA3	DEF3|HNP-3|HNP3|HP-3|HP3	"defensin, alpha 3, neutrophil-specific"	protein-coding
chr5.685097.-	chr5	685097	685098	-	0	NA	"intron (NM_007030, intron 1 of 3)"	"intron (NM_007030, intron 1 of 3)"	-8413	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr2.47660350.+	chr2	47660350	47660351	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30144	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr19.35418156.+	chr19	35418156	35418157	+	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	349	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr10.324402.-	chr10	324402	324403	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98468	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr22.50958976.-	chr22	50958976	50958977	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-5057	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr19.10846350.+	chr19	10846350	10846351	+	0	NA	"intron (NM_001005360, intron 1 of 20)"	AluSx1|SINE|Alu	17270	NR_030368	693223		NR_030368		MIR638	MIRN638|hsa-mir-638	microRNA 638	miscRNA
chrX.110926719.+	chrX	110926719	110926720	+	0	NA	"intron (NM_001257239, intron 2 of 3)"	AluSx|SINE|Alu	1834	NM_001257239	79868	Hs.443061	NM_001039210	ENSG00000101901	ALG13	CDG1S|CXorf45|GLT28D1|MDS031|TDRD13|YGL047W	"ALG13, UDP-N-acetylglucosaminyltransferase subunit"	protein-coding
chr3.13876381.-	chr3	13876381	13876382	-	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	-45237	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr7.25173833.-	chr7	25173833	25173834	-	0	NA	TTS (NM_138811)	TTS (NM_138811)	8853	NM_018947	54205	Hs.617193	NM_018947		CYCS	CYC|HCS|THC4	"cytochrome c, somatic"	protein-coding
chr3.3842616.+	chr3	3842616	3842617	+	0	NA	"intron (NM_020873, intron 1 of 1)"	CpG	1495	NM_020873	57633	Hs.163244	NM_020873	ENSG00000175928	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
chr8.122841344.+	chr8	122841344	122841345	+	0	NA	Intergenic	AluY|SINE|Alu	-187714	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
chrX.7012499.+	chrX	7012499	7012500	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53402	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr11.125035311.+	chr11	125035311	125035312	+	0	NA	"intron (NM_022062, intron 1 of 12)"	CpG	752	NM_022062	63876	Hs.278564	NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
chr20.60953266.+	chr20	60953266	60953267	+	0	NA	Intergenic	Intergenic	-8855	NM_001024	6227	Hs.190968	NM_001024	ENSG00000171858	RPS21	S21	ribosomal protein S21	protein-coding
chr21.38150555.+	chr21	38150555	38150556	+	0	NA	"intron (NM_000411, intron 7 of 11)"	AluY|SINE|Alu	78564	NM_009586	6493	Hs.146186	NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	single-minded homolog 2 (Drosophila)	protein-coding
chr10.125273634.+	chr10	125273634	125273635	+	0	NA	Intergenic	Intergenic	-152237	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr1.227982877.+	chr1	227982877	227982878	+	0	NA	Intergenic	Intergenic	-20541	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr2.237433272.-	chr2	237433272	237433273	-	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	17094	NR_073043	79781	Hs.711488	NM_001270584	ENSG00000132321	IQCA1	4930465P12Rik|IQCA	IQ motif containing with AAA domain 1	protein-coding
chr19.36843583.+	chr19	36843583	36843584	+	0	NA	"intron (NM_020917, intron 4 of 4)"	AluY|SINE|Alu	-20963	NR_038278	100506930	Hs.595153	NR_038278	ENSG00000232677	LINC00665	-	long intergenic non-protein coding RNA 665	miscRNA
chr17.78069262.+	chr17	78069262	78069263	+	0	NA	"intron (NM_017950, intron 18 of 19)"	"intron (NM_017950, intron 18 of 19)"	-6093	NM_001079804	2548	Hs.1437	NM_000152	ENSG00000171298	GAA	LYAG	"glucosidase, alpha; acid"	protein-coding
chr6.2221724.+	chr6	2221724	2221725	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24144	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chrX.152909510.-	chrX	152909510	152909511	-	0	NA	"intron (NM_001395, intron 1 of 3)"	CpG	-1613	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr8.105645471.-	chr8	105645471	105645472	-	0	NA	Intergenic	LTR12C|LTR|ERV1	44219	NM_001135703	29967	Hs.715867	NM_001135703	ENSG00000147650	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
chr22.24237320.-	chr22	24237320	24237321	-	0	NA	TTS (NM_002415)	TTS (NM_002415)	-755	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr20.43102709.+	chr20	43102709	43102710	+	0	NA	Intergenic	AluSz|SINE|Alu	-1817	NM_001261839	79183	Hs.283869	NM_001039199	ENSG00000124120	TTPAL	C20orf121	tocopherol (alpha) transfer protein-like	protein-coding
chr22.43539390.-	chr22	43539390	43539391	-	0	NA	promoter-TSS (NM_173467)	promoter-TSS (NM_173467)	-13	NR_046423	27349	Hs.349111	NM_014507		MCAT	FASN2C|MCT|MT|NET62|fabD	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding
chrX.142413212.-	chrX	142413212	142413213	-	0	NA	Intergenic	AluSg|SINE|Alu	-192095	NM_001009609	139067	Hs.447320	NM_001009609	ENSG00000189252	SPANXN3	CT11.8|SPANX-N3	"SPANX family, member N3"	protein-coding
chr2.95885008.+	chr2	95885008	95885009	+	0	NA	Intergenic	AluY|SINE|Alu	53825	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr19.15543324.-	chr19	15543324	15543325	-	0	NA	"intron (NM_021241, intron 3 of 7)"	CpG	13491	NM_014371	26993	Hs.399800	NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A kinase (PRKA) anchor protein 8-like	protein-coding
chrX.12751721.-	chrX	12751721	12751722	-	0	NA	Intergenic	AluY|SINE|Alu	57753	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr19.5148582.-	chr19	5148582	5148583	-	0	NA	"intron (NM_015015, intron 21 of 22)"	"intron (NM_015015, intron 21 of 22)"	-179458	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr22.22550496.+	chr22	22550496	22550497	+	0	NA	Intergenic	Intergenic	-48704	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr2.210525408.+	chr2	210525408	210525409	+	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	81005	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr19.1252689.+	chr19	1252689	1252690	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4137	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr10.75491522.-	chr10	75491522	75491523	-	0	NA	"non-coding (NR_048575, exon 1 of 1)"	"non-coding (NR_048575, exon 1 of 1)"	-223	NR_048575	2749	Hs.737939	NR_048575		GLUD1P3	C10orf102|Em:AC022400.11|GLUDP3|RP11-574K11.12	glutamate dehydrogenase 1 pseudogene 3	pseudo
chr5.128196989.+	chr5	128196989	128196990	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104221	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr19.464084.+	chr19	464084	464085	+	0	NA	"exon (NM_182577, exon 4 of 4)"	"exon (NM_182577, exon 4 of 4)"	-3088	NM_012435	25759	Hs.30965	NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC (Src homology 2 domain containing) transforming protein 2	protein-coding
chrX.39680355.+	chrX	39680355	39680356	+	0	NA	Intergenic	CpG	276364	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr4.39399558.-	chr4	39399558	39399559	-	0	NA	Intergenic	AluSx|SINE|Alu	8915	NM_175737	152831	Hs.90756	NM_175737	ENSG00000134962	KLB	BKL	klotho beta	protein-coding
chr16.341091.+	chr16	341091	341092	+	0	NA	"intron (NM_181050, intron 8 of 9)"	CpG	7973	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr17.5148708.-	chr17	5148708	5148709	-	0	NA	Intergenic	AluSq|SINE|Alu	10553	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr7.83302716.+	chr7	83302716	83302717	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-24237	NM_012431	9723	Hs.528721	NM_001178129	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E"	protein-coding
chr19.36571216.-	chr19	36571216	36571217	-	0	NA	"intron (NM_173636, intron 9 of 31)"	AluY|SINE|Alu	-25433	NM_001083961	284403	Hs.116244	NM_001083961	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
chrX.133565056.+	chrX	133565056	133565057	+	0	NA	Intergenic	AluSp|SINE|Alu	-29119	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr9.114342844.-	chr9	114342844	114342845	-	0	NA	"intron (NM_001146108, intron 6 of 9)"	AluSp|SINE|Alu	-18867	NM_012212	22949	Hs.584864	NM_001146108	ENSG00000106853	PTGR1	LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
chr16.28435292.+	chr16	28435292	28435293	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2483	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr7.936455.-	chr7	936455	936456	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20264	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr9.117180337.+	chr9	117180337	117180338	+	0	NA	"intron (NM_001173425, intron 7 of 11)"	MIR3|SINE|MIR	-23652	NM_030767	80709	Hs.494895	NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
chr13.112597812.-	chr13	112597812	112597813	-	0	NA	Intergenic	MIRc|SINE|MIR	124101	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr6.108395905.-	chr6	108395905	108395906	-	0	NA	promoter-TSS (NM_014028)	promoter-TSS (NM_014028)	-36	NM_014028	28962	Hs.741218	NM_014028	ENSG00000081087	OSTM1	GIPN|GL|OPTB5	osteopetrosis associated transmembrane protein 1	protein-coding
chr4.103422436.-	chr4	103422436	103422437	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	50	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr2.241622530.-	chr2	241622530	241622531	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	213	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr20.13660627.+	chr20	13660627	13660628	+	0	NA	Intergenic	AluY|SINE|Alu	-41044	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr2.10198568.+	chr2	10198568	10198569	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14196	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr19.10543056.+	chr19	10543056	10543057	+	0	NA	promoter-TSS (NM_001111309)	promoter-TSS (NM_001111309)	-55	NM_001111309	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr5.69056927.-	chr5	69056927	69056928	-	0	NA	Intergenic	AluYa5|SINE|Alu	50655	NR_027386	653188	Hs.654588	NR_027386	ENSG00000253203	GUSBP3	-	"glucuronidase, beta pseudogene 3"	pseudo
chr16.4537749.+	chr16	4537749	4537750	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8110	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr4.166248516.-	chr4	166248516	166248517	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	302	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr2.10302128.+	chr2	10302128	10302129	+	0	NA	"intron (NM_182626, intron 2 of 2)"	"intron (NM_182626, intron 2 of 2)"	20147	NM_182626	348738	Hs.454981	NM_182626		C2orf48	-	chromosome 2 open reading frame 48	protein-coding
chr2.173941050.-	chr2	173941050	173941051	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-485	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr17.7183166.-	chr17	7183166	7183167	-	0	NA	Intergenic	AluSx|SINE|Alu	1888	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr2.38825113.+	chr2	38825113	38825114	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5065	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr2.241622522.-	chr2	241622522	241622523	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	205	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr11.113666032.+	chr11	113666032	113666033	+	0	NA	Intergenic	AluSx|SINE|Alu	15514	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr20.3079559.+	chr20	3079559	3079560	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7998	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	miscRNA
chr4.29104955.-	chr4	29104955	29104956	-	0	NA	Intergenic	AluSz|SINE|Alu	-283751	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	miscRNA
chr2.240383509.-	chr2	240383509	240383510	-	0	NA	Intergenic	Intergenic	60866	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr19.2492363.-	chr19	2492363	2492364	-	0	NA	Intergenic	AluSz|SINE|Alu	-16240	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr12.56579282.-	chr12	56579282	56579283	-	0	NA	"intron (NM_003075, intron 3 of 27)"	AluSx1|SINE|Alu	-4069	NM_139067	6601	Hs.632717	NM_001130420		SMARCC2	BAF170|CRACC2|Rsc8	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2"	protein-coding
chr22.24563088.+	chr22	24563088	24563089	+	0	NA	"exon (NM_001201429, exon 31 of 36)"	"exon (NM_001201429, exon 31 of 36)"	-14356	NM_019601	56241	Hs.131819	NM_019601	ENSG00000099994	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
chr19.4141924.+	chr19	4141924	4141925	+	0	NA	Intergenic	AluY|SINE|Alu	-11674	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr9.6608175.-	chr9	6608175	6608176	-	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	-37517	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr4.158143743.-	chr4	158143743	158143744	-	0	NA	"intron (NM_001083620, intron 2 of 15)"	CpG	-1923	NM_001083620	2891	Hs.32763	NM_000826	ENSG00000120251	GRIA2	GLUR2|GLURB|GluA2|GluR-K2|HBGR2	"glutamate receptor, ionotropic, AMPA 2"	protein-coding
chr19.35329816.-	chr19	35329816	35329817	-	0	NA	Intergenic	CpG	6043	NR_033982	400685	Hs.730118	NR_033982	ENSG00000267767	LOC400685	-	uncharacterized LOC400685	miscRNA
chr17.4269068.-	chr17	4269068	4269069	-	0	NA	"intron (NM_003342, intron 1 of 5)"	CpG	-901	NM_003342	7326	Hs.741319	NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin-conjugating enzyme E2G 1	protein-coding
chr9.107043738.-	chr9	107043738	107043739	-	0	NA	Intergenic	AluY|SINE|Alu	-186907	NM_001042550	10592	Hs.119023	NM_001042550	ENSG00000136824	SMC2	CAP-E|CAPE|SMC-2|SMC2L1	structural maintenance of chromosomes 2	protein-coding
chr18.70534382.+	chr18	70534382	70534383	+	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	428	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr11.73347279.+	chr11	73347279	73347280	+	0	NA	Intergenic	AluSq|SINE|Alu	-9944	NM_001130033	58473	Hs.445489	NM_001130033	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	"pleckstrin homology domain containing, family B (evectins) member 1"	protein-coding
chr9.93000201.-	chr9	93000201	93000202	-	0	NA	Intergenic	AluY|SINE|Alu	196420	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr20.18040028.-	chr20	18040028	18040029	-	0	NA	Intergenic	Intergenic	1507	NM_021220	58495	Hs.710157	NM_021220	ENSG00000125850	OVOL2	EUROIMAGE566589|ZNF339	ovo-like 2 (Drosophila)	protein-coding
chr12.112161137.+	chr12	112161137	112161138	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37280	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr16.22173718.+	chr16	22173718	22173719	+	0	NA	Intergenic	CpG	-43874	NM_013302	29904	Hs.498892	NM_013302		EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding
chr11.125936547.-	chr11	125936547	125936548	-	0	NA	Intergenic	AluY|SINE|Alu	3360	NM_001243597	50937	Hs.38034	NM_001243597	ENSG00000064309	CDON	CDO|CDON1|HPE11|ORCAM	"cell adhesion associated, oncogene regulated"	protein-coding
chr12.126371124.+	chr12	126371124	126371125	+	0	NA	Intergenic	AluY|SINE|Alu	96796	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chr2.132203189.-	chr2	132203189	132203190	-	0	NA	promoter-TSS (NR_002826)	promoter-TSS (NR_002826)	-393	NR_046946	100873780		NR_046946	ENSG00000202478	RNU6-81	-	"RNA, U6 small nuclear 81"	snRNA
chr4.26862273.+	chr4	26862273	26862274	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-40	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr17.4926592.-	chr17	4926592	4926593	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12135	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chrX.90204208.-	chrX	90204208	90204209	-	0	NA	Intergenic	AluY|SINE|Alu	485389	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr6.170547852.-	chr6	170547852	170547853	-	0	NA	Intergenic	L2b|LINE|L2	-23805	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr10.134216425.-	chr10	134216425	134216426	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5723	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr14.24785823.-	chr14	24785823	24785824	-	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	-3510	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr13.96343932.+	chr13	96343932	96343933	+	0	NA	"intron (NM_006260, intron 1 of 11)"	SVA_D|Other|Other	14539	NM_006260	5611	Hs.59214	NM_006260		DNAJC3	ERdj6|HP58|P58|P58IPK|PRKRI	"DnaJ (Hsp40) homolog, subfamily C, member 3"	protein-coding
chr6.88090466.+	chr6	88090466	88090467	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16376	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr2.69337788.-	chr2	69337788	69337789	-	0	NA	"intron (NM_018153, intron 10 of 12)"	AluY|SINE|Alu	-6974	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	miscRNA
chrX.49682927.+	chrX	49682927	49682928	+	0	NA	Intergenic	AluSz|SINE|Alu	-4298	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr7.158854780.-	chr7	158854780	158854781	-	0	NA	"intron (NM_003382, intron 4 of 12)"	CpG	-53735	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr16.3109371.-	chr16	3109371	3109372	-	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	5942	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chrX.19905633.+	chrX	19905633	19905634	+	0	NA	"5' UTR (NM_031892, exon 1 of 18)"	"5' UTR (NM_031892, exon 1 of 18)"	111	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr21.46936716.+	chr21	46936716	46936717	+	0	NA	"intron (NM_001205207, intron 4 of 4)"	"intron (NM_001205207, intron 4 of 4)"	17826	NM_001205207	6573	Hs.736903	NM_001205206	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	"solute carrier family 19 (folate transporter), member 1"	protein-coding
chr10.124895541.-	chr10	124895541	124895542	-	0	NA	promoter-TSS (NM_001105574)	promoter-TSS (NM_001105574)	26	NM_001105574	340784	Hs.531194	NM_001105574		HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
chr16.58059915.+	chr16	58059915	58059916	+	0	NA	"5' UTR (NM_002428, exon 1 of 10)"	"5' UTR (NM_002428, exon 1 of 10)"	633	NM_002428	4324	Hs.80343	NM_002428	ENSG00000102996	MMP15	MT2-MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15 (membrane-inserted)	protein-coding
chr18.11959808.+	chr18	11959808	11959809	+	0	NA	Intergenic	SVA_D|Other|Other	-21619	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr7.40164638.-	chr7	40164638	40164639	-	0	NA	Intergenic	AluY|SINE|Alu	-9613	NM_138701	136647	Hs.654989	NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20	M-phase specific PLK1 interacting protein	protein-coding
chrX.20694443.-	chrX	20694443	20694444	-	0	NA	Intergenic	AluY|SINE|Alu	409693	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr12.53373489.-	chr12	53373489	53373490	-	0	NA	Intergenic	AluSx1|SINE|Alu	26573	NM_001417	1975	Hs.702041	NM_018507	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
chr14.77227734.-	chr14	77227734	77227735	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	501	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr15.41532099.-	chr15	41532099	41532100	-	0	NA	"intron (NM_007236, intron 1 of 6)"	AluY|SINE|Alu	-8662	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr3.42642502.-	chr3	42642502	42642503	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-70	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr4.8629336.+	chr4	8629336	8629337	+	0	NA	Intergenic	AluSx1|SINE|Alu	34949	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr8.144504256.+	chr8	144504256	144504257	+	0	NA	Intergenic	Intergenic	8346	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr10.125611156.+	chr10	125611156	125611157	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40344	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr12.96314742.-	chr12	96314742	96314743	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21686	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr2.48811041.+	chr2	48811041	48811042	+	0	NA	"intron (NM_172311, intron 2 of 10)"	AluSg|SINE|Alu	3315	NM_001198594	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr18.73357737.-	chr18	73357737	73357738	-	0	NA	Intergenic	L2|LINE|L2	218148	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr20.62127618.+	chr20	62127618	62127619	+	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	3050	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chrX.29933253.+	chrX	29933253	29933254	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300422	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr11.18743324.+	chr11	18743324	18743325	+	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	4453	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr15.91370804.+	chr15	91370804	91370805	+	0	NA	Intergenic	Intergenic	-41081	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr17.21825584.+	chr17	21825584	21825585	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	214	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr16.78269408.-	chr16	78269408	78269409	-	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	-136081	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr9.138397721.+	chr9	138397721	138397722	+	0	NA	Intergenic	Intergenic	5244	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr5.2740111.+	chr5	2740111	2740112	+	0	NA	Intergenic	CpG	11658	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr22.46303184.-	chr22	46303184	46303185	-	0	NA	Intergenic	Intergenic	-69824	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr20.55204218.+	chr20	55204218	55204219	+	0	NA	promoter-TSS (NM_003222)	promoter-TSS (NM_003222)	-140	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr4.132663916.-	chr4	132663916	132663917	-	0	NA	Intergenic	SST1|Satellite|centr	1406554	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr14.32466622.+	chr14	32466622	32466623	+	0	NA	Intergenic	AluY|SINE|Alu	79283	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	miscRNA
chr16.71647800.-	chr16	71647800	71647801	-	0	NA	Intergenic	AluSz|SINE|Alu	12256	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr2.120775585.+	chr2	120775585	120775586	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4800	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr20.61394275.+	chr20	61394275	61394276	+	0	NA	TTS (NM_002531)	TTS (NM_002531)	13933	NR_046224	100652730	Hs.254951	NR_046224		LINC00659	-	long intergenic non-protein coding RNA 659	miscRNA
chrX.53125852.-	chrX	53125852	53125853	-	0	NA	Intergenic	AluJb|SINE|Alu	-14310	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr14.105242458.+	chr14	105242458	105242459	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17480	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr14.88199458.-	chr14	88199458	88199459	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260157	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr8.14882330.+	chr8	14882330	14882331	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171311	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr9.83940616.-	chr9	83940616	83940617	-	0	NA	Intergenic	AluY|SINE|Alu	-362980	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr10.7626535.+	chr10	7626535	7626536	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35101	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr7.56888269.+	chr7	56888269	56888270	+	0	NA	Intergenic	Intergenic	61570	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr2.213546700.-	chr2	213546700	213546701	-	0	NA	Intergenic	AluSc8|SINE|Alu	143348	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr8.86574392.+	chr8	86574392	86574393	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	350	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr17.11144178.-	chr17	11144178	11144179	-	0	NA	promoter-TSS (NM_001173462)	promoter-TSS (NM_001173462)	562	NM_207386	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr2.62116030.+	chr2	62116030	62116031	+	0	NA	promoter-TSS (NM_001256721)	promoter-TSS (NM_001256721)	-224	NM_001256721	10575	Hs.421509	NM_001256721	ENSG00000115484	CCT4	CCT-DELTA|Cctd|SRB	"chaperonin containing TCP1, subunit 4 (delta)"	protein-coding
chr5.178491463.-	chr5	178491463	178491464	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3856	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr1.113336807.+	chr1	113336807	113336808	+	0	NA	Intergenic	MER70B|LTR|ERVL	73618	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr11.119091828.-	chr11	119091828	119091829	-	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	-14842	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr9.19088685.+	chr9	19088685	19088686	+	0	NA	"intron (NM_001270890, intron 5 of 16)"	AluSx1|SINE|Alu	14255	NM_017645	54801	Hs.533468	NM_001270890	ENSG00000147874	HAUS6	Dgt6|FAM29A	"HAUS augmin-like complex, subunit 6"	protein-coding
chr14.36549617.-	chr14	36549617	36549618	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9984	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr4.183675846.+	chr4	183675846	183675847	+	0	NA	"exon (NM_001080477, exon 21 of 27)"	"exon (NM_001080477, exon 21 of 27)"	162784	NM_001921	1635	Hs.183850	NM_001012732	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
chr17.26926487.+	chr17	26926487	26926488	+	0	NA	promoter-TSS (NM_006461)	promoter-TSS (NM_006461)	336	NR_040012	100506436	Hs.743630	NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	miscRNA
chr19.267119.-	chr19	267119	267120	-	0	NA	Intergenic	CpG	-24050	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr17.27717854.+	chr17	27717854	27717855	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-89	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr2.190650602.+	chr2	190650602	190650603	+	0	NA	"intron (NM_001128144, intron 1 of 11)"	AluSx|SINE|Alu	-1505	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr6.158399236.-	chr6	158399236	158399237	-	0	NA	Intergenic	Intergenic	3652	NM_003898	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr18.66379596.+	chr18	66379596	66379597	+	0	NA	"intron (NM_019022, intron 2 of 15)"	MER76-int|LTR|ERVL	2757	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr9.15428396.+	chr9	15428396	15428397	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5614	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr22.32868743.+	chr22	32868743	32868744	+	0	NA	Intergenic	AluY|SINE|Alu	-1964	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr6.168397411.-	chr6	168397411	168397412	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	19792	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr8.7877759.+	chr8	7877759	7877760	+	0	NA	Intergenic	Intergenic	-22716	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr18.29434812.-	chr18	29434812	29434813	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88279	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr8.8559269.+	chr8	8559269	8559270	+	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	-397	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr14.23517163.-	chr14	23517163	23517164	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5787	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr17.45078383.+	chr17	45078383	45078384	+	0	NA	Intergenic	AluSg4|SINE|Alu	-21769	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr2.207036842.+	chr2	207036842	207036843	+	0	NA	Intergenic	SVA_D|Other|Other	9890	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr6.141000375.+	chr6	141000375	141000376	+	0	NA	Intergenic	AluY|SINE|Alu	-4576	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr16.33293954.-	chr16	33293954	33293955	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4748	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr19.18057803.-	chr19	18057803	18057804	-	0	NA	Intergenic	AluSx|SINE|Alu	4308	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr1.32731842.-	chr1	32731842	32731843	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7870	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr4.42658256.+	chr4	42658256	42658257	+	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	866	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr4.185174112.-	chr4	185174112	185174113	-	0	NA	Intergenic	LTR12C|LTR|ERV1	34998	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr2.45395921.-	chr2	45395921	45395922	-	0	NA	Intergenic	CpG	-86159	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	UNQ6975	-	putative uncharacterized protein UNQ6975/PRO21958	miscRNA
chr16.4761004.-	chr16	4761004	4761005	-	0	NA	"intron (NM_001242929, intron 4 of 14)"	AluSz|SINE|Alu	-17310	NM_001193452	84309	Hs.513315	NM_001193452	ENSG00000168101	NUDT16L1	SDOS	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding
chr4.42659043.+	chr4	42659043	42659044	+	0	NA	promoter-TSS (NM_001105529)	promoter-TSS (NM_001105529)	79	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr21.32930272.+	chr21	32930272	32930273	+	0	NA	"intron (NM_003253, intron 1 of 28)"	CpG	1018	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr1.10727898.+	chr1	10727898	10727899	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128835	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chrM.6365.+	chrM	6365	6366	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr18.21213765.+	chr18	21213765	21213766	+	0	NA	"intron (NM_173505, intron 5 of 9)"	AluSg|SINE|Alu	29084	NM_173505	147463	Hs.374774	NM_173505	ENSG00000154065	ANKRD29	-	ankyrin repeat domain 29	protein-coding
chr3.11959389.+	chr3	11959389	11959390	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-71037	NM_138807	132001	Hs.475472	NM_138807	ENSG00000144559	TAMM41	C3orf31|RAM41|TAM41	"TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)"	protein-coding
chr2.241363384.-	chr2	241363384	241363385	-	0	NA	Intergenic	Intergenic	11731	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr7.821254.+	chr7	821254	821255	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33940	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr10.129924327.-	chr10	129924327	129924328	-	0	NA	"intron (NM_002417, intron 1 of 14)"	CpG-3415	-141	NM_002417	4288	Hs.689823	NM_001145966	ENSG00000148773	MKI67	KIA	antigen identified by monoclonal antibody Ki-67	protein-coding
chr2.91874339.+	chr2	91874339	91874340	+	0	NA	Intergenic	CpG	-26364	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr13.96681120.+	chr13	96681120	96681121	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24616	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chrY.13464380.+	chrY	13464380	13464381	+	0	NA	Intergenic	LSAU|Satellite|Satellite	1069009	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr6.168209550.+	chr6	168209550	168209551	+	0	NA	Intergenic	AluSq|SINE|Alu	-12011	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr4.148075840.-	chr4	148075840	148075841	-	0	NA	Intergenic	AluY|SINE|Alu	208806	NM_031956	83894	Hs.378893	NM_031956	ENSG00000137473	TTC29	NYD-SP14|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
chr15.66993599.+	chr15	66993599	66993600	+	0	NA	Intergenic	CpG	-1075	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr20.33062681.+	chr20	33062681	33062682	+	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	8551	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr7.100963600.-	chr7	100963600	100963601	-	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	-1493	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chrX.117828375.-	chrX	117828375	117828376	-	0	NA	Intergenic	AluSx|SINE|Alu	33184	NM_001560	3597	Hs.496646	NM_001560	ENSG00000131724	IL13RA1	CD213A1|IL-13Ra|NR4	"interleukin 13 receptor, alpha 1"	protein-coding
chr12.9892348.-	chr12	9892348	9892349	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6453	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr12.129892198.+	chr12	129892198	129892199	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496014	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr9.139529219.+	chr9	139529219	139529220	+	0	NA	Intergenic	AluSg|SINE|Alu	-24089	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr17.29421869.-	chr17	29421869	29421870	-	0	NA	promoter-TSS (NM_001128147)	promoter-TSS (NM_001128147)	76	NM_000267	4763	Hs.113577	NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
chr15.90792667.-	chr15	90792667	90792668	-	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	97	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr15.66993586.+	chr15	66993586	66993587	+	0	NA	Intergenic	CpG	-1088	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr3.46792396.+	chr3	46792396	46792397	+	0	NA	Intergenic	CpG	-6151	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr3.29288134.-	chr3	29288134	29288135	-	0	NA	Intergenic	AluY|SINE|Alu	34669	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr6.21404906.+	chr6	21404906	21404907	+	0	NA	Intergenic	AluSz|SINE|Alu	-189066	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr9.134449866.+	chr9	134449866	134449867	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43204	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr8.141030049.+	chr8	141030049	141030050	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314750	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr17.40536647.-	chr17	40536647	40536648	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3758	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr20.13654618.-	chr20	13654618	13654619	-	0	NA	Intergenic	AluY|SINE|Alu	35035	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr22.39040976.+	chr22	39040976	39040977	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11658	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr2.136403821.-	chr2	136403821	136403822	-	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	19146	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr12.121330514.-	chr12	121330514	121330515	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluY|SINE|Alu	-11641	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr12.131551528.+	chr12	131551528	131551529	+	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	-98028	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr8.73448772.-	chr8	73448772	73448773	-	0	NA	promoter-TSS (NM_004770)	promoter-TSS (NM_004770)	854	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	"potassium voltage-gated channel, Shab-related subfamily, member 2"	protein-coding
chr2.9894275.+	chr2	9894275	9894276	+	0	NA	Intergenic	Intergenic	-89296	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr9.80898928.+	chr9	80898928	80898929	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13131	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr6.4780636.+	chr6	4780636	4780637	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3956	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr14.51297531.-	chr14	51297531	51297532	-	0	NA	"intron (NM_016350, intron 1 of 28)"	CpG-7011	-308	NM_016350	51199	Hs.569387	NM_016350	ENSG00000100503	NIN	SCKL7	ninein (GSK3B interacting protein)	protein-coding
chr17.37738758.-	chr17	37738758	37738759	-	0	NA	Intergenic	AluY|SINE|Alu	-25417	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr16.11746976.-	chr16	11746976	11746977	-	0	NA	Intergenic	AluSx1|SINE|Alu	15313	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr1.200589602.-	chr1	200589602	200589603	-	0	NA	"5' UTR (NM_014875, exon 1 of 30)"	"5' UTR (NM_014875, exon 1 of 30)"	-260	NM_014875	9928	Hs.3104	NM_014875	ENSG00000118193	KIF14	-	kinesin family member 14	protein-coding
chr12.108297640.-	chr12	108297640	108297641	-	0	NA	promoter-TSS (NR_037629)	promoter-TSS (NR_037629)	92	NR_037629	728739	Hs.741995	NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
chr7.5396340.+	chr7	5396340	5396341	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66837	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr17.9163728.-	chr17	9163728	9163729	-	0	NA	"intron (NM_004853, intron 7 of 7)"	AluSx|SINE|Alu	-238869	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr13.66584752.-	chr13	66584752	66584753	-	0	NA	Intergenic	AluY|SINE|Alu	814549	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr14.102109518.+	chr14	102109518	102109519	+	0	NA	Intergenic	AluY|SINE|Alu	81830	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr7.22396735.+	chr7	22396735	22396736	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-202	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr19.18180385.-	chr19	18180385	18180386	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17312	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr4.86391857.+	chr4	86391857	86391858	+	0	NA	Intergenic	AluY|SINE|Alu	-4427	NM_001025616	83478	Hs.444229	NM_001025616	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
chr6.3157970.+	chr6	3157970	3157971	+	0	NA	promoter-TSS (NM_001069)	promoter-TSS (NM_001069)	-187	NM_001069	7280	Hs.654543	NM_001069	ENSG00000137267	TUBB2A	TUBB|TUBB2|dJ40E16.7	"tubulin, beta 2A class IIa"	protein-coding
chr14.34667850.+	chr14	34667850	34667851	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247566	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr7.95234849.+	chr7	95234849	95234850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8924	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr2.185463387.-	chr2	185463387	185463388	-	0	NA	"5' UTR (NM_194250, exon 1 of 4)"	"5' UTR (NM_194250, exon 1 of 4)"	-294	NM_194250	91752	Hs.159528	NM_194250	ENSG00000170396	ZNF804A	C2orf10	zinc finger protein 804A	protein-coding
chr21.37627701.+	chr21	37627701	37627702	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64786	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr5.27619304.-	chr5	27619304	27619305	-	0	NA	Intergenic	AluY|SINE|Alu	-146905	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr22.39994945.-	chr22	39994945	39994946	-	0	NA	"intron (NM_001003406, intron 2 of 35)"	"intron (NM_001003406, intron 2 of 35)"	-28187	NM_001003406	8911	Hs.125116	NM_001003406	ENSG00000100346	CACNA1I	Cav3.3|ca(v)3.3	"calcium channel, voltage-dependent, T type, alpha 1I subunit"	protein-coding
chr17.79427758.+	chr17	79427758	79427759	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9544	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr6.25384345.-	chr6	25384345	25384346	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104689	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr12.121168068.+	chr12	121168068	121168069	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSg|SINE|Alu	4497	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr3.41409698.-	chr3	41409698	41409699	-	0	NA	"intron (NM_017886, intron 35 of 36)"	AluY|SINE|Alu	-168756	NM_001098209	1499	Hs.476018	NM_001098209	ENSG00000168036	CTNNB1	CTNNB|MRD19|armadillo	"catenin (cadherin-associated protein), beta 1, 88kDa"	protein-coding
chr13.21872302.-	chr13	21872302	21872303	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-38	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr4.40196252.+	chr4	40196252	40196253	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2275	NM_004310	399	Hs.654594	NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
chr9.133788047.-	chr9	133788047	133788048	-	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	18822	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr13.31023994.-	chr13	31023994	31023995	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16087	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr2.131551985.-	chr2	131551985	131551986	-	0	NA	Intergenic	AluY|SINE|Alu	-38121	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr1.6297042.+	chr1	6297042	6297043	+	0	NA	promoter-TSS (NM_012405)	promoter-TSS (NM_012405)	-998	NM_012405	23463	Hs.515688	NM_012405	ENSG00000116237	ICMT	HSTE14|MST098|MSTP098|PCCMT|PCMT|PPMT	isoprenylcysteine carboxyl methyltransferase	protein-coding
chr1.62169589.+	chr1	62169589	62169590	+	0	NA	"intron (NM_032027, intron 3 of 6)"	AluSq2|SINE|Alu	21506	NM_032027	83941	Hs.656790	NM_032027	ENSG00000162604	TM2D1	BBP	TM2 domain containing 1	protein-coding
chr16.2450395.-	chr16	2450395	2450396	-	0	NA	"intron (NR_003574, intron 9 of 16)"	SVA_D|Other|Other	29000	NM_001761	899	Hs.1973	NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1	cyclin F	protein-coding
chr17.78711246.-	chr17	78711246	78711247	-	0	NA	"intron (NM_020761, intron 5 of 33)"	"intron (NM_020761, intron 5 of 33)"	-192621	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chrX.42145000.-	chrX	42145000	42145001	-	0	NA	Intergenic	SVA_D|Other|Other	362713	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr11.101908822.+	chr11	101908822	101908823	+	0	NA	Intergenic	AluYa5|SINE|Alu	-9347	NM_001195005	85016	Hs.98328	NM_001195005	ENSG00000137691	C11orf70	-	chromosome 11 open reading frame 70	protein-coding
chr20.55204205.-	chr20	55204205	55204206	-	0	NA	promoter-TSS (NM_003222)	promoter-TSS (NM_003222)	153	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr14.75875510.+	chr14	75875510	75875511	+	0	NA	Intergenic	AluY|SINE|Alu	-18999	NM_001135047	122953	Hs.196482	NM_001135047	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
chr6.111303154.+	chr6	111303154	111303155	+	0	NA	promoter-TSS (NM_032194)	promoter-TSS (NM_032194)	-137	NM_032194	84154	Hs.372265	NM_032194		RPF2	BXDC1|bA397G5.4	ribosome production factor 2 homolog (S. cerevisiae)	protein-coding
chr14.53476781.+	chr14	53476781	53476782	+	0	NA	Intergenic	AluSx|SINE|Alu	-58966	NM_006832	10979	Hs.509343	NM_001134999	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
chr12.101954442.+	chr12	101954442	101954443	+	0	NA	Intergenic	AluSx|SINE|Alu	-34267	NM_001254721	4604	Hs.654589	NM_001254718	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	"myosin binding protein C, slow type"	protein-coding
chr21.47343949.+	chr21	47343949	47343950	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-57714	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr7.727463.-	chr7	727463	727464	-	0	NA	"intron (NM_002735, intron 2 of 10)"	AluSx1|SINE|Alu	-24698	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr2.207270707.-	chr2	207270707	207270708	-	0	NA	Intergenic	AluY|SINE|Alu	37661	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr3.173023506.-	chr3	173023506	173023507	-	0	NA	Intergenic	AluYc|SINE|Alu	92738	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr19.45852822.+	chr19	45852822	45852823	+	0	NA	"exon (NM_177417, exon 8 of 13)"	"exon (NM_177417, exon 8 of 13)"	8824	NM_177417	147700	Hs.298079	NM_177417	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
chr11.578869.-	chr11	578869	578870	-	0	NA	"intron (NM_020901, intron 1 of 17)"	AluSx|SINE|Alu	-2386	NM_020901	57661	Hs.325838	NM_020901	ENSG00000070047	PHRF1	RNF221	PHD and ring finger domains 1	protein-coding
chr18.54318536.+	chr18	54318536	54318537	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-80	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr8.22480547.-	chr8	22480547	22480548	-	0	NA	"intron (NM_018688, intron 8 of 8)"	"intron (NM_018688, intron 8 of 8)"	-18008	NM_021174	57805	Hs.433722	NM_199205	ENSG00000158941	KIAA1967	DBC-1|DBC1|NET35|p30 DBC|p30DBC	KIAA1967	protein-coding
chr11.119091840.+	chr11	119091840	119091841	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14854	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr9.138663347.-	chr9	138663347	138663348	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69316	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr19.35418190.+	chr19	35418190	35418191	+	0	NA	"intron (NM_001099438, intron 1 of 4)"	CpG	383	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr19.42759138.-	chr19	42759138	42759139	-	0	NA	"exon (NM_006494, exon 1 of 4)"	"exon (NM_006494, exon 1 of 4)"	-171	NM_006494	2077	Hs.655969	NM_006494	ENSG00000105722	ERF	PE-2|PE2	Ets2 repressor factor	protein-coding
chr9.35658589.+	chr9	35658589	35658590	+	0	NA	promoter-TSS (NR_003051)	promoter-TSS (NR_003051)	302	NM_174923	203260	Hs.534579	NM_001195200	ENSG00000159884	CCDC107	PSEC0222	coiled-coil domain containing 107	protein-coding
chr13.82029620.-	chr13	82029620	82029621	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114534	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr7.130332841.-	chr7	130332841	130332842	-	0	NA	"intron (NM_012133, intron 5 of 12)"	AluSc8|SINE|Alu	-20757	NM_012133	26958	Hs.6421	NM_012133		COPG2	2-COP	"coatomer protein complex, subunit gamma 2"	protein-coding
chr19.16612704.-	chr19	16612704	16612705	-	0	NA	"intron (NM_032207, intron 2 of 8)"	"intron (NM_032207, intron 2 of 8)"	-5499	NM_032207	84167	Hs.631627	NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
chr7.99630246.+	chr7	99630246	99630247	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17027	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chrX.68786588.+	chrX	68786588	68786589	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49323	NM_001005610	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr1.37941298.+	chr1	37941298	37941299	+	0	NA	"exon (NM_025079, exon 2 of 6)"	"exon (NM_025079, exon 2 of 6)"	1179	NM_025079	80149	Hs.656294	NM_025079	ENSG00000163874	ZC3H12A	MCPIP|MCPIP1|RP3-423B22.1|dJ423B22.1	zinc finger CCCH-type containing 12A	protein-coding
chr19.7123245.+	chr19	7123245	7123246	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53774	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr8.14882349.-	chr8	14882349	14882350	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171330	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr2.80427867.+	chr2	80427867	80427868	+	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluSx1|SINE|Alu	103620	NM_178839	347730	Hs.591580	NM_178839	ENSG00000162951	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
chrX.112142834.+	chrX	112142834	112142835	+	0	NA	Intergenic	AluY|SINE|Alu	-58791	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr16.887493.+	chr16	887493	887494	+	0	NA	Intergenic	AluSc8|SINE|Alu	32050	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr12.106477570.-	chr12	106477570	106477571	-	0	NA	"intron (NM_014840, intron 4 of 6)"	"intron (NM_014840, intron 4 of 6)"	-56241	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr2.174828945.-	chr2	174828945	174828946	-	0	NA	promoter-TSS (NM_001017371)	promoter-TSS (NM_001017371)	-2	NM_001017371	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr22.18839303.+	chr22	18839303	18839304	+	0	NA	Intergenic	Intergenic	-54433	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr2.198058475.+	chr2	198058475	198058476	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117046	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr19.9311324.-	chr19	9311324	9311325	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14223	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr5.5953943.-	chr5	5953943	5953944	-	0	NA	Intergenic	Intergenic	-383462	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr6.89378016.-	chr6	89378016	89378017	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295332	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr5.116980868.-	chr5	116980868	116980869	-	0	NA	Intergenic	AluY|SINE|Alu	-229660	NR_046089	728342	Hs.434420	NR_046089		LOC728342	-	uncharacterized LOC728342	miscRNA
chr4.1165840.-	chr4	1165840	1165841	-	0	NA	"exon (NM_001128325, exon 3 of 7)"	"exon (NM_001128325, exon 3 of 7)"	-817	NM_012445	10417	Hs.736956	NM_001128325	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	"spondin 2, extracellular matrix protein"	protein-coding
chr2.70416467.-	chr2	70416467	70416468	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1684	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chrX.153736342.+	chrX	153736342	153736343	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8224	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr6.64268028.+	chr6	64268028	64268029	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13892	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr1.114299606.+	chr1	114299606	114299607	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2171	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr16.12210388.-	chr16	12210388	12210389	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139786	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr22.51010965.+	chr22	51010965	51010966	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5541	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr20.43342007.-	chr20	43342007	43342008	-	0	NA	Intergenic	AluSx|SINE|Alu	1878	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr9.14830604.-	chr9	14830604	14830605	-	0	NA	"intron (NM_144966, intron 11 of 37)"	"intron (NM_144966, intron 11 of 37)"	51073	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr5.176738855.+	chr5	176738855	176738856	+	0	NA	"5' UTR (NM_031300, exon 1 of 6)"	"5' UTR (NM_031300, exon 1 of 6)"	437	NM_031300	83463	Hs.743332	NM_001142935	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
chr16.70148618.+	chr16	70148618	70148619	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1089	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr20.46019525.-	chr20	46019525	46019526	-	0	NA	Intergenic	AluY|SINE|Alu	34051	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr5.693683.-	chr5	693683	693684	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	173	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr13.50177143.+	chr13	50177143	50177144	+	0	NA	Intergenic	AluY|SINE|Alu	-17424	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr4.48016912.+	chr4	48016912	48016913	+	0	NA	Intergenic	AluY|SINE|Alu	-1879	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr10.120946145.+	chr10	120946145	120946146	+	0	NA	Intergenic	AluY|SINE|Alu	-7800	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr4.1004844.+	chr4	1004844	1004845	+	0	NA	promoter-TSS (NM_001004358)	promoter-TSS (NM_001004358)	-766	NM_001004356	53834	Hs.193326	NM_001004356	ENSG00000127418	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
chr5.25101120.+	chr5	25101120	25101121	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-260428	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr11.1158826.+	chr11	1158826	1158827	+	0	NA	Intergenic	Intergenic	83951	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr9.128842657.-	chr9	128842657	128842658	-	0	NA	Intergenic	LTR7|LTR|ERV1	246466	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr6.108315404.+	chr6	108315404	108315405	+	0	NA	Intergenic	AluSz|SINE|Alu	-35922	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr2.90482959.+	chr2	90482959	90482960	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365016	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr20.14910693.+	chr20	14910693	14910694	+	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	-532	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr13.51484250.-	chr13	51484250	51484251	-	0	NA	"exon (NM_024570, exon 1 of 11)"	"exon (NM_024570, exon 1 of 11)"	-436	NM_001142279	79621	Hs.306291	NM_001142279	ENSG00000136104	RNASEH2B	AGS2|DLEU8	"ribonuclease H2, subunit B"	protein-coding
chr22.20453285.-	chr22	20453285	20453286	-	0	NA	Intergenic	AluY|SINE|Alu	-8501	NM_015672	85376	Hs.115429	NM_015672	ENSG00000196622	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
chr9.140854397.+	chr9	140854397	140854398	+	0	NA	"intron (NM_000718, intron 10 of 45)"	L2a|LINE|L2	82156	NM_001243812	774	Hs.495522	NM_000718	ENSG00000148408	CACNA1B	BIII|CACNL1A5|CACNN|Cav2.2	"calcium channel, voltage-dependent, N type, alpha 1B subunit"	protein-coding
chr2.210525397.-	chr2	210525397	210525398	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80994	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr19.21789911.+	chr19	21789911	21789912	+	0	NA	Intergenic	SVA_D|Other|Other	101474	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr9.137588848.+	chr9	137588848	137588849	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55196	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr1.227498649.+	chr1	227498649	227498650	+	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	7177	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chrX.103014799.-	chrX	103014799	103014800	-	0	NA	Intergenic	AluY|SINE|Alu	16640	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr16.87091783.+	chr16	87091783	87091784	+	0	NA	Intergenic	Intergenic	259243	NM_001256917	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr3.42630504.+	chr3	42630504	42630505	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1794	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr19.21734820.-	chr19	21734820	21734821	-	0	NA	Intergenic	SVA_D|Other|Other	-46383	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr18.54318537.+	chr18	54318537	54318538	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-79	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr2.242500469.+	chr2	242500469	242500470	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1911	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr2.16671128.-	chr2	16671128	16671129	-	0	NA	Intergenic	AluY|SINE|Alu	-176006	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	"family with sequence similarity 49, member A"	protein-coding
chr22.22550463.-	chr22	22550463	22550464	-	0	NA	Intergenic	Intergenic	48737	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr19.7929636.-	chr19	7929636	7929637	-	0	NA	"3' UTR (NM_001159944, exon 19 of 19)"	"3' UTR (NM_001159944, exon 19 of 19)"	-9690	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr8.43274651.-	chr8	43274651	43274652	-	0	NA	Intergenic	SVA_D|Other|Other	-127066	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr8.57359145.-	chr8	57359145	57359146	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-137	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr17.71390393.+	chr17	71390393	71390394	+	0	NA	"exon (NM_001144952, exon 26 of 45)"	"exon (NM_001144952, exon 26 of 45)"	-82250	NM_012121	23580	Hs.3903	NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
chrX.103014803.+	chrX	103014803	103014804	+	0	NA	Intergenic	AluY|SINE|Alu	-16636	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr9.121440492.-	chr9	121440492	121440493	-	0	NA	Intergenic	SVA_B|Other|Other	-691247	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr14.68143279.-	chr14	68143279	68143280	-	0	NA	TTS (NM_016026)	TTS (NM_016026)	1677	NM_006370	10490	Hs.741177	NM_006370		VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
chr1.3672669.-	chr1	3672669	3672670	-	0	NA	"intron (NM_152492, intron 3 of 11)"	AluSg7|SINE|Alu	-3704	NM_152492	148870	Hs.348700	NM_152492	ENSG00000162592	CCDC27	-	coiled-coil domain containing 27	protein-coding
chr9.141111307.-	chr9	141111307	141111308	-	0	NA	"intron (NM_001145249, intron 3 of 6)"	AluSc8|SINE|Alu	-4670	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	"family with sequence similarity 157, member B"	protein-coding
chr2.121244086.-	chr2	121244086	121244087	-	0	NA	Intergenic	Intergenic	20161	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr9.6758619.+	chr9	6758619	6758620	+	0	NA	"intron (NM_001146694, intron 1 of 20)"	CpG	978	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr20.45991179.+	chr20	45991179	45991180	+	0	NA	Intergenic	AluSz|SINE|Alu	-5705	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr20.61942940.+	chr20	61942940	61942941	+	0	NA	"intron (NM_020882, intron 12 of 35)"	"intron (NM_020882, intron 12 of 35)"	18402	NM_020882	57642	Hs.271285	NM_020882	ENSG00000101203	COL20A1	bA261N11.4	"collagen, type XX, alpha 1"	protein-coding
chr9.135753798.-	chr9	135753798	135753799	-	0	NA	promoter-TSS (NM_018956)	promoter-TSS (NM_018956)	-400	NM_152572	158067	Hs.421340	NM_152572	ENSG00000165695	AK8	C9orf98|DDX31|RP11-143F18.1	adenylate kinase 8	protein-coding
chr7.158238818.+	chr7	158238818	158238819	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	86687	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr10.104238493.-	chr10	104238493	104238494	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17323	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr14.75536334.+	chr14	75536334	75536335	+	0	NA	promoter-TSS (NM_001042430)	promoter-TSS (NM_001042430)	35	NM_001042430	79696	Hs.48642	NM_001042430	ENSG00000119703	ZC2HC1C	C14orf140|FAM164C	"zinc finger, C2HC-type containing 1C"	protein-coding
chr13.45945048.-	chr13	45945048	45945049	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29568	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr19.50670085.+	chr19	50670085	50670086	+	0	NA	Intergenic	AluSg|SINE|Alu	-3547	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr20.30192959.+	chr20	30192959	30192960	+	0	NA	promoter-TSS (NM_002165)	promoter-TSS (NM_002165)	-127	NM_181353	3397	Hs.504609	NM_002165	ENSG00000125968	ID1	ID|bHLHb24	"inhibitor of DNA binding 1, dominant negative helix-loop-helix protein"	protein-coding
chr1.171662925.+	chr1	171662925	171662926	+	0	NA	Intergenic	SVA_C|Other|Other	-41152	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr9.36596628.-	chr9	36596628	36596629	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23769	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr1.80177678.+	chr1	80177678	80177679	+	0	NA	Intergenic	AluSx|SINE|Alu	-705183	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr22.50348562.+	chr22	50348562	50348563	+	0	NA	Intergenic	Intergenic	-5581	NM_001001852	415116	Hs.530381	NM_001001852	ENSG00000198355	PIM3	pim-3	pim-3 oncogene	protein-coding
chr8.100115818.-	chr8	100115818	100115819	-	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	-90324	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr4.1626791.+	chr4	1626791	1626792	+	0	NA	Intergenic	CpG	58927	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr7.21370298.-	chr7	21370298	21370299	-	0	NA	Intergenic	MER52D|LTR|ERV1	97391	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr3.14349494.+	chr3	14349494	14349495	+	0	NA	Intergenic	Intergenic	-94612	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chrX.51075602.+	chrX	51075602	51075603	+	0	NA	"intron (NM_153183, intron 1 of 2)"	CpG	519	NM_153183	170685	Hs.375178	NM_153183	ENSG00000122824	NUDT10	APS2|DIPP3a|hDIPP3alpha	nudix (nucleoside diphosphate linked moiety X)-type motif 10	protein-coding
chr1.226303126.-	chr1	226303126	226303127	-	0	NA	Intergenic	SVA_D|Other|Other	-52698	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	"H3 histone, family 3A, pseudogene 4"	pseudo
chr2.232202244.+	chr2	232202244	232202245	+	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	-25175	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr20.61425576.-	chr20	61425576	61425577	-	0	NA	Intergenic	Intergenic	2229	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr15.64013599.+	chr15	64013599	64013600	+	0	NA	"intron (NM_003922, intron 19 of 77)"	AluSx|SINE|Alu	112548	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
chrX.152916379.+	chrX	152916379	152916380	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8482	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr16.71814168.+	chr16	71814168	71814169	+	0	NA	"intron (NM_001030007, intron 2 of 23)"	AluSz|SINE|Alu	-21778	NR_003059	692111		NR_003059		SNORD71	HBII-239|MIRN768|hsa-mir-768	"small nucleolar RNA, C/D box 71"	snoRNA
chr19.22949523.+	chr19	22949523	22949524	+	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	17450	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr5.1494536.-	chr5	1494536	1494537	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29540	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr6.149772746.-	chr6	149772746	149772747	-	0	NA	"intron (NM_207360, intron 5 of 5)"	CpG	-33402	NM_207360	340152	Hs.632618	NM_207360		ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
chr2.241363389.+	chr2	241363389	241363390	+	0	NA	Intergenic	Intergenic	-11726	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr21.35774247.+	chr21	35774247	35774248	+	0	NA	Intergenic	AluSc8|SINE|Alu	26498	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr6.26709668.-	chr6	26709668	26709669	-	0	NA	Intergenic	AluY|SINE|Alu	49688	NM_001242799	79692	Hs.530271	NM_001242797		ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
chr2.43253959.+	chr2	43253959	43253960	+	0	NA	Intergenic	Intergenic	199786	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr19.18057782.+	chr19	18057782	18057783	+	0	NA	Intergenic	AluSx|SINE|Alu	-4329	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr6.38607911.+	chr6	38607911	38607912	+	0	NA	promoter-TSS (NM_001099272)	promoter-TSS (NM_001099272)	13	NM_052893	114781	Hs.603858	NM_001099272	ENSG00000183826	BTBD9	dJ322I12.1	BTB (POZ) domain containing 9	protein-coding
chr21.22013061.-	chr21	22013061	22013062	-	0	NA	Intergenic	AluY|SINE|Alu	-162365	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	miscRNA
chr2.106682216.-	chr2	106682216	106682217	-	0	NA	"5' UTR (NM_032411, exon 1 of 4)"	"5' UTR (NM_032411, exon 1 of 4)"	-103	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr6.149638280.-	chr6	149638280	149638281	-	0	NA	Intergenic	CpG	1156	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr8.22441961.-	chr8	22441961	22441962	-	0	NA	"intron (NM_198042, intron 2 of 7)"	AluJb|SINE|Alu	-3974	NM_176871	64236	Hs.632034	NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2 (mystique)	protein-coding
chr2.224724701.-	chr2	224724701	224724702	-	0	NA	Intergenic	AluSp|SINE|Alu	22382	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr2.43253932.+	chr2	43253932	43253933	+	0	NA	Intergenic	Intergenic	199813	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr6.167600302.-	chr6	167600302	167600303	-	0	NA	Intergenic	Intergenic	-16221	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr20.62512956.-	chr20	62512956	62512957	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13499	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr22.46286091.-	chr22	46286091	46286092	-	0	NA	Intergenic	MIRb|SINE|MIR	-86917	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr15.68096913.-	chr15	68096913	68096914	-	0	NA	"intron (NM_001206804, intron 21 of 21)"	"intron (NM_001206804, intron 21 of 21)"	15129	NM_001258024	390598	Hs.451224	NM_001031807		SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
chr3.183052337.-	chr3	183052337	183052338	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81305	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr1.164961913.-	chr1	164961913	164961914	-	0	NA	Intergenic	AluY|SINE|Alu	218035	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	miscRNA
chr16.87360538.-	chr16	87360538	87360539	-	0	NA	Intergenic	Intergenic	9512	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr5.114712451.+	chr5	114712451	114712452	+	0	NA	Intergenic	AluYc3|SINE|Alu	-79993	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr14.102983053.-	chr14	102983053	102983054	-	0	NA	Intergenic	CpG	6925	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr22.51001391.+	chr22	51001391	51001392	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-63	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr17.29030288.+	chr17	29030288	29030289	+	0	NA	Intergenic	Intergenic	-6338	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
chr5.141558681.-	chr5	141558681	141558682	-	0	NA	Intergenic	AluSg|SINE|Alu	-70357	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr19.1252666.-	chr19	1252666	1252667	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4114	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr4.185174146.+	chr4	185174146	185174147	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35032	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr16.58288628.+	chr16	58288628	58288629	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4788	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr15.93372495.+	chr15	93372495	93372496	+	0	NA	Intergenic	AluSg|SINE|Alu	33781	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr5.114712439.+	chr5	114712439	114712440	+	0	NA	Intergenic	AluYc3|SINE|Alu	-79981	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr7.2718559.-	chr7	2718559	2718560	-	0	NA	promoter-TSS (NM_133463)	promoter-TSS (NM_133463)	604	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr6.162998494.-	chr6	162998494	162998495	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149670	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr19.7123171.+	chr19	7123171	7123172	+	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	53700	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr22.21070537.+	chr22	21070537	21070538	+	0	NA	"intron (NM_002650, intron 13 of 22)"	AluY|SINE|Alu	15135	NR_026815	84222	Hs.546454	NR_026815	ENSG00000226287	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
chr14.84437077.+	chr14	84437077	84437078	+	0	NA	Intergenic	AluY|SINE|Alu	-1559411	NM_013231	23768	Hs.744139	NM_013231	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chr16.75369581.-	chr16	75369581	75369582	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluY|SINE|Alu	67630	NM_001170715	9564	Hs.479747	NM_001170714	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
chr1.153574067.+	chr1	153574067	153574068	+	0	NA	Intergenic	AluY|SINE|Alu	11447	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr2.71562045.+	chr2	71562045	71562046	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3160	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr12.105389719.+	chr12	105389719	105389720	+	0	NA	Intergenic	AluY|SINE|Alu	9621	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr8.144504248.+	chr8	144504248	144504249	+	0	NA	Intergenic	Intergenic	8354	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr3.122695711.-	chr3	122695711	122695712	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	730	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr20.34314907.+	chr20	34314907	34314908	+	0	NA	"intron (NR_040723, intron 7 of 17)"	AluSx|SINE|Alu	15351	NM_001242599	9584	Hs.282901	NM_001242599	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
chr6.170055426.+	chr6	170055426	170055427	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46733	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr19.3093850.+	chr19	3093850	3093851	+	0	NA	promoter-TSS (NM_002067)	promoter-TSS (NM_002067)	-558	NM_002067	2767	Hs.654784	NM_002067		GNA11	GNA-11	"guanine nucleotide binding protein (G protein), alpha 11 (Gq class)"	protein-coding
chr2.236999631.+	chr2	236999631	236999632	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	77021	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr13.19518220.-	chr13	19518220	19518221	-	0	NA	Intergenic	GSATX|Satellite|centr	64179	NR_026852	348021	Hs.314114	NR_026852	ENSG00000232685	LINC00442	-	long intergenic non-protein coding RNA 442	miscRNA
chr1.9832303.+	chr1	9832303	9832304	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52247	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr7.157746211.-	chr7	157746211	157746212	-	0	NA	"intron (NM_130842, intron 10 of 21)"	"intron (NM_130842, intron 10 of 21)"	-98934	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr10.45240357.+	chr10	45240357	45240358	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166407	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr11.2571787.-	chr11	2571787	2571788	-	0	NA	"intron (NR_040711, intron 2 of 15)"	"intron (NR_040711, intron 2 of 15)"	-89121	NR_040711	3784	Hs.95162	NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	"potassium voltage-gated channel, KQT-like subfamily, member 1"	protein-coding
chr1.32679302.+	chr1	32679302	32679303	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4607	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr11.128775074.-	chr11	128775074	128775075	-	0	NA	"intron (NR_045767, intron 1 of 3)"	"intron (NR_045767, intron 1 of 3)"	-518	NM_145013	219833	Hs.689860	NM_001256088	ENSG00000174370	C11orf45	-	chromosome 11 open reading frame 45	protein-coding
chr1.195321155.-	chr1	195321155	195321156	-	0	NA	Intergenic	AluY|SINE|Alu	-1230456	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr16.88509910.+	chr16	88509910	88509911	+	0	NA	Intergenic	Intergenic	-10104	NM_153813	161882	Hs.632218	NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	"zinc finger protein, FOG family member 1"	protein-coding
chr2.90482951.-	chr2	90482951	90482952	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365024	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr13.33774988.+	chr13	33774988	33774989	+	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	5199	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr16.632115.-	chr16	632115	632116	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7242	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr5.28928055.+	chr5	28928055	28928056	+	0	NA	TTS (NR_033961)	TTS (NR_033961)	1078	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr17.18575678.+	chr17	18575678	18575679	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	816	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr2.242500488.+	chr2	242500488	242500489	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1930	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr8.144161280.-	chr8	144161280	144161281	-	0	NA	Intergenic	Intergenic	-40601	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr8.86507910.+	chr8	86507910	86507911	+	0	NA	Intergenic	AluSc|SINE|Alu	59995	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr14.105134525.-	chr14	105134525	105134526	-	0	NA	Intergenic	AluSz|SINE|Alu	-9561	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr1.178011492.+	chr1	178011492	178011493	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4350	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr20.62457904.+	chr20	62457904	62457905	+	0	NA	Intergenic	AluY|SINE|Alu	-21048	NM_025224	140685	Hs.585028	NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
chr17.1226060.+	chr17	1226060	1226061	+	0	NA	Intergenic	Intergenic	43103	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr5.31774721.+	chr5	31774721	31774722	+	0	NA	Intergenic	AluSq|SINE|Alu	-24310	NM_178140	23037	Hs.481819	NM_178140	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
chr17.18575668.-	chr17	18575668	18575669	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-826	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr9.107727033.-	chr9	107727033	107727034	-	0	NA	Intergenic	AluYa5|SINE|Alu	36506	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr14.101679089.+	chr14	101679089	101679090	+	0	NA	Intergenic	AluSx1|SINE|Alu	142841	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr14.23438219.-	chr14	23438219	23438220	-	0	NA	Intergenic	AluSx1|SINE|Alu	-8213	NM_198086	84962	Hs.655832	NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
chr6.70692618.-	chr6	70692618	70692619	-	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	-116170	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr2.25758488.-	chr2	25758488	25758489	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114603	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr12.120959425.+	chr12	120959425	120959426	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7539	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr4.3450262.-	chr4	3450262	3450263	-	0	NA	"intron (NM_001528, intron 13 of 13)"	"intron (NM_001528, intron 13 of 13)"	-6536	NM_001528	3083	Hs.104	NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
chr5.141451784.+	chr5	141451784	141451785	+	0	NA	Intergenic	AluSq|SINE|Alu	-36540	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr20.5213539.+	chr20	5213539	5213540	+	0	NA	Intergenic	AluJr4|SINE|Alu	81476	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr16.1120049.+	chr16	1120049	1120050	+	0	NA	"intron (NR_027242, intron 2 of 3)"	"intron (NR_027242, intron 2 of 3)"	-2707	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr12.113573503.-	chr12	113573503	113573504	-	0	NA	promoter-TSS (NM_001193521)	promoter-TSS (NM_001193521)	-56	NM_001193521	8437	Hs.528693	NM_001193520	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1 (GAP1 like)	protein-coding
chr1.217697528.+	chr1	217697528	217697529	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106881	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr5.172159013.-	chr5	172159013	172159014	-	0	NA	Intergenic	Intergenic	-39190	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
chr7.95234897.-	chr7	95234897	95234898	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8972	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr19.52640530.-	chr19	52640530	52640531	-	0	NA	"intron (NM_178523, intron 1 of 3)"	AluY|SINE|Alu	-2661	NM_178523	90317	Hs.731969	NM_178523		ZNF616	-	zinc finger protein 616	protein-coding
chr17.7246254.-	chr17	7246254	7246255	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluJb|SINE|Alu	-6406	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr10.133869279.+	chr10	133869279	133869280	+	0	NA	Intergenic	Intergenic	-49034	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr20.14910691.-	chr20	14910691	14910692	-	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	530	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr12.111751757.-	chr12	111751757	111751758	-	0	NA	"intron (NM_015267, intron 16 of 21)"	"intron (NM_015267, intron 16 of 21)"	-55168	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr1.5005209.+	chr1	5005209	5005210	+	0	NA	Intergenic	Intergenic	290104	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr2.131551984.+	chr2	131551984	131551985	+	0	NA	Intergenic	AluY|SINE|Alu	38120	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr1.151573458.-	chr1	151573458	151573459	-	0	NA	Intergenic	SVA_E|Other|Other	11204	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr19.13497337.+	chr19	13497337	13497338	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119937	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr21.43109595.-	chr21	43109595	43109596	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10133	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr8.28449380.-	chr8	28449380	28449381	-	0	NA	Intergenic	AluSg4|SINE|Alu	86681	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	miscRNA
chrX.54269616.-	chrX	54269616	54269617	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59902	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr12.33592865.+	chr12	33592865	33592866	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-111	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr15.91471055.-	chr15	91471055	91471056	-	0	NA	Intergenic	AluSc8|SINE|Alu	2355	NM_001039675	55898	Hs.389461	NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|SMAP-1|SMAP1	unc-45 homolog A (C. elegans)	protein-coding
chr14.75377553.+	chr14	75377553	75377554	+	0	NA	"intron (NM_031464, intron 6 of 10)"	"intron (NM_031464, intron 6 of 10)"	11592	NM_031464	83694	Hs.414481	NM_031464		RPS6KL1	-	ribosomal protein S6 kinase-like 1	protein-coding
chr4.138974459.-	chr4	138974459	138974460	-	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	35709	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr6.43016686.-	chr6	43016686	43016687	-	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	-4997	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr16.89034066.-	chr16	89034066	89034067	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9438	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr19.35418167.-	chr19	35418167	35418168	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-360	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr7.1155002.-	chr7	1155002	1155003	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	-22891	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chr7.50673337.-	chr7	50673337	50673338	-	0	NA	"intron (NM_001001549, intron 10 of 14)"	"intron (NM_001001549, intron 10 of 14)"	40183	NM_001082971	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
chr11.18582279.+	chr11	18582279	18582280	+	0	NA	"intron (NM_001261386, intron 4 of 6)"	AluSx|SINE|Alu	18786	NM_001261385	55293	Hs.407991	NM_001040698	ENSG00000151116	UEVLD	ATTP|UEV3	UEV and lactate/malate dehyrogenase domains	protein-coding
chr14.88199433.-	chr14	88199433	88199434	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260182	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr9.127265719.+	chr9	127265719	127265720	+	0	NA	"intron (NM_004959, intron 1 of 6)"	CpG-27011	3980	NM_004959	2516	Hs.495108	NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3	"nuclear receptor subfamily 5, group A, member 1"	protein-coding
chr7.5205934.+	chr7	5205934	5205935	+	0	NA	Intergenic	AluSq2|SINE|Alu	-21757	NR_034163	645700	Hs.690815	NR_034163	ENSG00000159904	ZNF890P	-	"zinc finger protein 890, pseudogene"	pseudo
chr4.185655164.+	chr4	185655164	185655165	+	0	NA	"intron (NM_024629, intron 1 of 12)"	CpG	122	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr9.141038919.-	chr9	141038919	141038920	-	0	NA	Intergenic	Intergenic	5646	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr7.1798870.+	chr7	1798870	1798871	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50072	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr2.237068266.+	chr2	237068266	237068267	+	0	NA	Intergenic	CpG	8386	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr11.722128.+	chr11	722128	722129	+	0	NA	"exon (NM_022772, exon 12 of 21)"	"exon (NM_022772, exon 12 of 21)"	16008	NM_022772	64787	Hs.55016	NM_022772	ENSG00000177106	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
chr19.2276474.-	chr19	2276474	2276475	-	0	NA	"exon (NM_198532, exon 4 of 4)"	"exon (NM_198532, exon 4 of 4)"	-5707	NM_198532	374872	Hs.511803	NM_198532	ENSG00000188305	C19orf35	-	chromosome 19 open reading frame 35	protein-coding
chr16.30960900.-	chr16	30960900	30960901	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-495	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr3.45348420.+	chr3	45348420	45348421	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80606	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr20.47588420.+	chr20	47588420	47588421	+	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	50145	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chrX.153594383.+	chrX	153594383	153594384	+	0	NA	"intron (NM_001456, intron 9 of 46)"	"intron (NM_001456, intron 9 of 46)"	8623	NM_001110556	2316	Hs.195464	NM_001110556	ENSG00000196924	FLNA	ABP-280|ABPX|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	"filamin A, alpha"	protein-coding
chr2.159693840.+	chr2	159693840	159693841	+	0	NA	Intergenic	AluSp|SINE|Alu	42011	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr3.31574014.+	chr3	31574014	31574015	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-477	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr2.113965322.+	chr2	113965322	113965323	+	0	NA	Intergenic	AluY|SINE|Alu	-27782	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr6.157468602.-	chr6	157468602	157468603	-	0	NA	"intron (NM_020732, intron 8 of 19)"	C-rich|Low_complexity|Low_complexity	-276651	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr2.198058502.-	chr2	198058502	198058503	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117019	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr15.83922904.-	chr15	83922904	83922905	-	0	NA	Intergenic	AluY|SINE|Alu	-30564	NM_001717	646	Hs.459153	NM_001717	ENSG00000169594	BNC1	BNC|BSN1|HsT19447	basonuclin 1	protein-coding
chr15.93372489.-	chr15	93372489	93372490	-	0	NA	Intergenic	AluSg|SINE|Alu	-33775	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr7.16632880.+	chr7	16632880	16632881	+	0	NA	Intergenic	AluJb|SINE|Alu	52562	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr17.49244315.+	chr17	49244315	49244316	+	0	NA	"exon (NM_002512, exon 2 of 5)"	"exon (NM_002512, exon 2 of 5)"	232	NM_001018138	4831	Hs.463456	NM_001018137	ENSG00000011052	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
chr9.128986044.-	chr9	128986044	128986045	-	0	NA	Intergenic	Intergenic	103079	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr3.196669406.+	chr3	196669406	196669407	+	0	NA	promoter-TSS (NR_024388)	promoter-TSS (NR_024388)	58	NM_007362	22916	Hs.591671	NM_001042540	ENSG00000114503	NCBP2	CBC2|CBP20|NIP1	"nuclear cap binding protein subunit 2, 20kDa"	protein-coding
chr11.71702909.-	chr11	71702909	71702910	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7049	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr19.47117080.-	chr19	47117080	47117081	-	0	NA	Intergenic	MIRb|SINE|MIR	-11274	NM_000960	5739	Hs.458324	NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 (prostacyclin) receptor (IP)	protein-coding
chr2.47660361.-	chr2	47660361	47660362	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-30155	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr3.43949893.-	chr3	43949893	43949894	-	0	NA	Intergenic	LTR16E1|LTR|ERVL	205811	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1	microRNA 138-1	miscRNA
chr4.134726970.-	chr4	134726970	134726971	-	0	NA	Intergenic	AluY|SINE|Alu	-395933	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	"poly(A) binding protein, cytoplasmic 4-like"	protein-coding
chr10.30144990.-	chr10	30144990	30144991	-	0	NA	Intergenic	AluSx3|SINE|Alu	120260	NM_003174	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
chr11.74875056.-	chr11	74875056	74875057	-	0	NA	"exon (NM_007256, exon 3 of 14)"	"exon (NM_007256, exon 3 of 14)"	-4212	NM_001145211	11309	Hs.7884	NM_001145211	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	"solute carrier organic anion transporter family, member 2B1"	protein-coding
chr17.29255143.+	chr17	29255143	29255144	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6389	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr12.57417326.-	chr12	57417326	57417327	-	0	NA	Intergenic	AluSx3|SINE|Alu	6982	NR_033654	6866	Hs.9730	NM_001178054	ENSG00000166863	TAC3	HH10|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin 3	protein-coding
chr22.43670604.-	chr22	43670604	43670605	-	0	NA	"intron (NM_173050, intron 4 of 21)"	"intron (NM_173050, intron 4 of 21)"	-68790	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr10.81002373.-	chr10	81002373	81002374	-	0	NA	"intron (NM_020338, intron 7 of 24)"	CpG	104847	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr7.1283974.-	chr7	1283974	1283975	-	0	NA	Intergenic	CpG	-11320	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr13.28494346.+	chr13	28494346	28494347	+	0	NA	"exon (NM_000209, exon 1 of 2)"	"exon (NM_000209, exon 1 of 2)"	178	NM_000209	3651	Hs.32938	NM_000209	ENSG00000139515	PDX1	GSF|IDX-1|IPF1|IUF1|MODY4|PDX-1|STF-1	pancreatic and duodenal homeobox 1	protein-coding
chr11.119091825.-	chr11	119091825	119091826	-	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	-14839	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr12.58176627.-	chr12	58176627	58176628	-	0	NA	promoter-TSS (NM_001172697)	promoter-TSS (NM_001172697)	-99	NM_001172697	10102	Hs.632704	NM_001172695	ENSG00000123297	TSFM	EFTS|EFTSMT	"Ts translation elongation factor, mitochondrial"	protein-coding
chr3.190580827.+	chr3	190580827	190580828	+	0	NA	promoter-TSS (NM_001146686)	promoter-TSS (NM_001146686)	-362	NM_001146686	647309	Hs.518490	NM_001146686	ENSG00000205835	GMNC	GEMC1	geminin coiled-coil domain containing	protein-coding
chr19.19410447.+	chr19	19410447	19410448	+	0	NA	"intron (NM_172231, intron 7 of 13)"	AluY|SINE|Alu	20874	NM_172231	57794	Hs.515274	NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G patch domain containing 1	protein-coding
chr6.168395137.+	chr6	168395137	168395138	+	0	NA	Intergenic	AluSx|SINE|Alu	-17518	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr1.16366236.+	chr1	16366236	16366237	+	0	NA	Intergenic	Intergenic	-3995	NM_000085	1188	Hs.352243	XM_003960900	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	"chloride channel, voltage-sensitive Kb"	protein-coding
chr2.202092570.-	chr2	202092570	202092571	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5596	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr1.40657227.-	chr1	40657227	40657228	-	0	NA	"intron (NM_012421, intron 3 of 7)"	"intron (NM_012421, intron 3 of 7)"	-30186	NM_012421	6018	Hs.205627	NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	rearranged L-myc fusion	protein-coding
chr3.160822886.-	chr3	160822886	160822887	-	0	NA	promoter-TSS (NM_033169)	promoter-TSS (NM_033169)	203	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr5.95297263.+	chr5	95297263	95297264	+	0	NA	"intron (NM_012081, intron 1 of 11)"	CpG	512	NM_012081	22936	Hs.708710	NM_012081	ENSG00000118985	ELL2	-	"elongation factor, RNA polymerase II, 2"	protein-coding
chr4.26862255.-	chr4	26862255	26862256	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	58	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr9.137588856.-	chr9	137588856	137588857	-	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	-55204	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr7.54614212.+	chr7	54614212	54614213	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4193	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr16.1228068.+	chr16	1228068	1228069	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24827	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr9.140446482.-	chr9	140446482	140446483	-	0	NA	"intron (NM_032477, intron 1 of 1)"	CpG	-173	NM_032477	64975	Hs.44017	NM_032477		MRPL41	BMRP|MRP-L27|MRPL27|RPML27	mitochondrial ribosomal protein L41	protein-coding
chr1.240947671.+	chr1	240947671	240947672	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172209	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr4.49636360.+	chr4	49636360	49636361	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	648095	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr16.68573268.+	chr16	68573268	68573269	+	0	NA	promoter-TSS (NM_133458)	promoter-TSS (NM_133458)	-393	NM_133458	146198	Hs.709017	NM_133458	ENSG00000184939	ZFP90	NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
chr9.1044872.+	chr9	1044872	1044873	+	0	NA	Intergenic	Intergenic	-5474	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr17.12456635.-	chr17	12456635	12456636	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3350	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr16.25711699.-	chr16	25711699	25711700	-	0	NA	"intron (NM_006040, intron 1 of 1)"	"intron (NM_006040, intron 1 of 1)"	-8352	NM_006040	9951	Hs.655275	NM_006040	ENSG00000182601	HS3ST4	3-OST-4|30ST4|3OST4|h3-OST-4	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding
chr16.77246828.+	chr16	77246828	77246829	+	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	13479	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr19.1871353.+	chr19	1871353	1871354	+	0	NA	Intergenic	Intergenic	-7789	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr6.89377975.-	chr6	89377975	89377976	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295373	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr17.18575693.-	chr17	18575693	18575694	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-801	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr4.1721027.+	chr4	1721027	1721028	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	2057	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr21.45684279.+	chr21	45684279	45684280	+	0	NA	Intergenic	AluY|SINE|Alu	-2180	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr1.39450190.+	chr1	39450190	39450191	+	0	NA	Intergenic	AluY|SINE|Alu	-6726	NM_024595	79647	Hs.293563	NM_001136275	ENSG00000174574	AKIRIN1	C1orf108|RP11-781D11.2|STRF2	akirin 1	protein-coding
chr20.57575081.+	chr20	57575081	57575082	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7228	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr17.18575701.+	chr17	18575701	18575702	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	793	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr2.9934252.+	chr2	9934252	9934253	+	0	NA	Intergenic	Intergenic	-49319	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr19.35418182.-	chr19	35418182	35418183	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-375	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr10.6244988.-	chr10	6244988	6244989	-	0	NA	"5' UTR (NM_004566, exon 1 of 15)"	"5' UTR (NM_004566, exon 1 of 15)"	-148	NM_004566	5209	Hs.195471	NM_001145443	ENSG00000170525	PFKFB3	IPFK2|PFK2	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3"	protein-coding
chr11.3224484.+	chr11	3224484	3224485	+	0	NA	Intergenic	Intergenic	-15078	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr8.78788188.-	chr8	78788188	78788189	-	0	NA	Intergenic	AluY|SINE|Alu	640148	NM_181839	5569	Hs.732129	NM_006823	ENSG00000171033	PKIA	PRKACN1	"protein kinase (cAMP-dependent, catalytic) inhibitor alpha"	protein-coding
chr19.1252707.-	chr19	1252707	1252708	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4155	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr5.78495525.-	chr5	78495525	78495526	-	0	NA	Intergenic	AluY|SINE|Alu	36400	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHDC1L3	"junction mediating and regulatory protein, p53 cofactor"	protein-coding
chr6.123144185.-	chr6	123144185	123144186	-	0	NA	Intergenic	AluY|SINE|Alu	-34214	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr2.42782477.+	chr2	42782477	42782478	+	0	NA	Intergenic	AluSp|SINE|Alu	-13194	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr8.144503714.-	chr8	144503714	144503715	-	0	NA	Intergenic	CpG	-8888	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr6.34857472.-	chr6	34857472	34857473	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-434	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr11.67034383.+	chr11	67034383	67034384	+	0	NA	"intron (NM_001619, intron 1 of 20)"	CpG	478	NM_001619	156	Hs.83636	NM_001619	ENSG00000173020	ADRBK1	BARK1|BETA-ARK1|GRK2	"adrenergic, beta, receptor kinase 1"	protein-coding
chr20.61736920.+	chr20	61736920	61736921	+	0	NA	Intergenic	Intergenic	-3249	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr9.137588875.+	chr9	137588875	137588876	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55223	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr2.1563033.-	chr2	1563033	1563034	-	0	NA	Intergenic	Intergenic	-144853	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr5.30269944.-	chr5	30269944	30269945	-	0	NA	Intergenic	AluY|SINE|Alu	923818	NM_004932	1004	Hs.171054	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	"cadherin 6, type 2, K-cadherin (fetal kidney)"	protein-coding
chr19.18831466.-	chr19	18831466	18831467	-	0	NA	"intron (NM_015321, intron 1 of 13)"	AluY|SINE|Alu	-37041	NM_001098482	23373	Hs.371096	NM_025021	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
chr13.96681119.-	chr13	96681119	96681120	-	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	-24617	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr19.53979676.+	chr19	53979676	53979677	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8687	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr22.47058679.+	chr22	47058679	47058680	+	0	NA	"intron (NM_015124, intron 4 of 17)"	"intron (NM_015124, intron 4 of 17)"	36021	NM_015124	23151	Hs.475150	NM_015124	ENSG00000075240	GRAMD4	DIP|dA59H18.1|dJ439F8.1	GRAM domain containing 4	protein-coding
chr6.166074004.+	chr6	166074004	166074005	+	0	NA	"intron (NR_045597, intron 1 of 22)"	CpG	1584	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chrY.8786258.-	chrY	8786258	8786259	-	0	NA	Intergenic	SVA_C|Other|Other	100835	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr10.135031519.-	chr10	135031519	135031520	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12259	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr1.54953498.-	chr1	54953498	54953499	-	0	NA	Intergenic	Intergenic	60309	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr1.28450671.+	chr1	28450671	28450672	+	0	NA	Intergenic	AluSc8|SINE|Alu	-35523	NM_001990	2140	Hs.185774	NM_001990	ENSG00000158161	EYA3	-	eyes absent homolog 3 (Drosophila)	protein-coding
chr1.113544064.+	chr1	113544064	113544065	+	0	NA	Intergenic	AluY|SINE|Alu	-45089	NM_003051	6566	Hs.75231	NM_001166496	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1	"solute carrier family 16, member 1 (monocarboxylic acid transporter 1)"	protein-coding
chr5.14460490.+	chr5	14460490	14460491	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121401	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr19.3644497.+	chr19	3644497	3644498	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17684	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chrX.53123426.+	chrX	53123426	53123427	+	0	NA	Intergenic	CpG	11884	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr13.112597814.+	chr13	112597814	112597815	+	0	NA	Intergenic	MIRc|SINE|MIR	-124099	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr1.40708660.-	chr1	40708660	40708661	-	0	NA	Intergenic	AluSc8|SINE|Alu	4913	NM_001008740	127391	Hs.406265	NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
chr8.123899510.-	chr8	123899510	123899511	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105609	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr15.37172810.-	chr15	37172810	37172811	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5924	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr3.49368443.+	chr3	49368443	49368444	+	0	NA	"intron (NM_001251877, intron 2 of 6)"	AluY|SINE|Alu	9093	NM_001251877	7375	Hs.403828	NM_001251877	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
chr10.35559769.-	chr10	35559769	35559770	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	-23816	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr1.2038586.+	chr1	2038586	2038587	+	0	NA	"intron (NM_001033582, intron 1 of 14)"	CpG	2431	NM_001033582	5590	Hs.496255	NM_001033581	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	"protein kinase C, zeta"	protein-coding
chr9.88969533.-	chr9	88969533	88969534	-	0	NA	promoter-TSS (NM_024617)	promoter-TSS (NM_024617)	131	NM_001185059	79670	Hs.597057	NM_001185059	ENSG00000083223	ZCCHC6	PAPD6	"zinc finger, CCHC domain containing 6"	protein-coding
chr10.118500977.-	chr10	118500977	118500978	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1108	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr6.90432378.-	chr6	90432378	90432379	-	0	NA	"intron (NM_014611, intron 40 of 101)"	AluSq2|SINE|Alu	83904	NM_020466	57226	Hs.177275	NM_020466	ENSG00000083099	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
chr18.30896357.+	chr18	30896357	30896358	+	0	NA	"intron (NM_198995, intron 11 of 21)"	LTR12C|LTR|ERV1	123688	NM_001105528	374864	Hs.115461	NM_001105528	ENSG00000166960	CCDC178	C18orf34	coiled-coil domain containing 178	protein-coding
chr11.45810284.-	chr11	45810284	45810285	-	0	NA	Intergenic	AluSz6|SINE|Alu	15339	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr19.50803068.-	chr19	50803068	50803069	-	0	NA	"intron (NM_001145809, intron 39 of 42)"	AluSz|SINE|Alu	-29566	NM_004977	3748	Hs.467146	NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	"potassium voltage-gated channel, Shaw-related subfamily, member 3"	protein-coding
chr1.173533916.+	chr1	173533916	173533917	+	0	NA	"intron (NM_178527, intron 9 of 27)"	AluY|SINE|Alu	38317	NM_178527	284525	Hs.494981	NM_178527	ENSG00000162753	SLC9C2	RP3-436N22.2|SLC9A11	"solute carrier family 9, member C2 (putative)"	protein-coding
chr20.61885493.+	chr20	61885493	61885494	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	163	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr1.218165421.-	chr1	218165421	218165422	-	0	NA	Intergenic	AluSq|SINE|Alu	-99179	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr4.4878345.-	chr4	4878345	4878346	-	0	NA	Intergenic	AluSx1|SINE|Alu	-16953	NM_002448	4487	Hs.424414	NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
chr7.16632902.-	chr7	16632902	16632903	-	0	NA	Intergenic	AluJb|SINE|Alu	-52540	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr16.25268956.-	chr16	25268956	25268957	-	0	NA	promoter-TSS (NM_001012981)	promoter-TSS (NM_001012981)	101	NM_001012981	342357	Hs.513451	NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
chr20.1317815.-	chr20	1317815	1317816	-	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	7936	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr3.170641490.-	chr3	170641490	170641491	-	0	NA	Intergenic	SVA_C|Other|Other	15064	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr19.19410476.+	chr19	19410476	19410477	+	0	NA	"intron (NM_172231, intron 7 of 13)"	AluY|SINE|Alu	20845	NM_172231	57794	Hs.515274	NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G patch domain containing 1	protein-coding
chr4.124363980.+	chr4	124363980	124363981	+	0	NA	Intergenic	AluSx3|SINE|Alu	43335	NM_005841	10252	Hs.436944	NM_001258038	ENSG00000164056	SPRY1	hSPRY1	"sprouty homolog 1, antagonist of FGF signaling (Drosophila)"	protein-coding
chrX.23801554.+	chrX	23801554	23801555	+	0	NA	"intron (NR_027783, intron 1 of 6)"	CpG	279	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr6.8388459.-	chr6	8388459	8388460	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47335	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr3.112807949.+	chr3	112807949	112807950	+	0	NA	Intergenic	AluYc|SINE|Alu	-69394	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr13.76648476.-	chr13	76648476	76648477	-	0	NA	Intergenic	AluY|SINE|Alu	-203302	NM_001257995	729420	Hs.586820	NM_001257995	ENSG00000178734	C13orf45	-	chromosome 13 open reading frame 45	protein-coding
chr2.240371695.-	chr2	240371695	240371696	-	0	NA	Intergenic	SVA_D|Other|Other	49052	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr2.121010398.-	chr2	121010398	121010399	-	0	NA	promoter-TSS (NM_002881)	promoter-TSS (NM_002881)	16	NM_002881	5899	Hs.469820	NM_002881	ENSG00000144118	RALB	-	v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein)	protein-coding
chr7.64198964.+	chr7	64198964	64198965	+	0	NA	Intergenic	SVA_D|Other|Other	-55802	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr12.133115603.-	chr12	133115603	133115604	-	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	-48446	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr2.27665359.+	chr2	27665359	27665360	+	0	NA	TTS (NM_013392)	TTS (NM_013392)	126	NM_173853	200634	Hs.59509	NM_001168364	ENSG00000157992	KRTCAP3	KCP3|MRV222|PRO9898	keratinocyte associated protein 3	protein-coding
chr1.179051076.+	chr1	179051076	179051077	+	0	NA	promoter-TSS (NM_022371)	promoter-TSS (NM_022371)	-36	NM_022371	64222	Hs.584957	NM_022371		TOR3A	ADIR|ADIR2	"torsin family 3, member A"	protein-coding
chr9.134152261.+	chr9	134152261	134152262	+	0	NA	promoter-TSS (NM_033387)	promoter-TSS (NM_033387)	-355	NM_033387	286336	Hs.704076	NM_033387	ENSG00000126882	FAM78A	C9orf59	"family with sequence similarity 78, member A"	protein-coding
chr12.133115266.+	chr12	133115266	133115267	+	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	48109	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr2.119939753.+	chr2	119939753	119939754	+	0	NA	Intergenic	Intergenic	-23282	NM_182528	165257	Hs.433493	NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	"complement component 1, q subcomponent-like 2"	protein-coding
chr14.21741114.+	chr14	21741114	21741115	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3476	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr12.8057410.-	chr12	8057410	8057411	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31482	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr1.32679300.-	chr1	32679300	32679301	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4605	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr9.138678358.-	chr9	138678358	138678359	-	0	NA	"exon (NM_020822, exon 29 of 31)"	"exon (NM_020822, exon 29 of 31)"	-84327	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr8.27509104.+	chr8	27509104	27509105	+	0	NA	"exon (NM_182826, exon 3 of 6)"	"exon (NM_182826, exon 3 of 6)"	17527	NM_016240	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	"scavenger receptor class A, member 3"	protein-coding
chr8.30590283.+	chr8	30590283	30590284	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4797	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr10.135270889.-	chr10	135270889	135270890	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3457	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr1.146991631.+	chr1	146991631	146991632	+	0	NA	Intergenic	AluSp|SINE|Alu	-1932	NR_038423	100289211	Hs.323484	NR_038423		LINC00624	-	long intergenic non-protein coding RNA 624	miscRNA
chr2.239047366.+	chr2	239047366	239047367	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	3	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr19.1953240.-	chr19	1953240	1953241	-	0	NA	"intron (NR_033400, intron 2 of 2)"	"intron (NR_033400, intron 2 of 2)"	-1308	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	miscRNA
chr20.62479310.+	chr20	62479310	62479311	+	0	NA	Intergenic	Intergenic	-13256	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr11.77751911.+	chr11	77751911	77751912	+	0	NA	"intron (NM_001203262, intron 1 of 2)"	AluSq2|SINE|Alu	-17591	NM_023930	65987	Hs.709780	NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerisation domain containing 14	protein-coding
chr7.150812767.-	chr7	150812767	150812768	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28941	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr7.73149748.-	chr7	73149748	73149749	-	0	NA	TTS (NR_026910)	TTS (NR_026910)	-349	NR_026690	171022	Hs.650513	NR_026690	ENSG00000225969	LINC00035	ABHD11-AS1|NCRNA00035|WBSCR26	long intergenic non-protein coding RNA 35	miscRNA
chr14.23790735.+	chr14	23790735	23790736	+	0	NA	"exon (NM_004643, exon 1 of 7)"	"exon (NM_004643, exon 1 of 7)"	1338	NM_004643	8106	Hs.707712	NM_004643		PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	"poly(A) binding protein, nuclear 1"	protein-coding
chr9.38705446.-	chr9	38705446	38705447	-	0	NA	Intergenic	AluY|SINE|Alu	-84361	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chrM.3667.-	chrM	3667	3668	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.127626598.-	chr9	127626598	127626599	-	0	NA	Intergenic	AluSx|SINE|Alu	2358	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr8.6644904.-	chr8	6644904	6644905	-	0	NA	Intergenic	AluY|SINE|Alu	42143	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr3.49047696.-	chr3	49047696	49047697	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3059	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr2.202092544.-	chr2	202092544	202092545	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5622	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr2.80531654.-	chr2	80531654	80531655	-	0	NA	promoter-TSS (NM_178839)	promoter-TSS (NM_178839)	167	NM_178839	347730	Hs.591580	NM_178839	ENSG00000162951	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
chr16.53227221.+	chr16	53227221	53227222	+	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	138276	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr19.45678469.+	chr19	45678469	45678470	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3032	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr4.78003225.+	chr4	78003225	78003226	+	0	NA	Intergenic	AluSp|SINE|Alu	-6100	NM_006835	10983	Hs.518827	NM_006835	ENSG00000118816	CCNI	CYC1|CYI	cyclin I	protein-coding
chr9.138663330.+	chr9	138663330	138663331	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69299	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr1.236252171.-	chr1	236252171	236252172	-	0	NA	Intergenic	AluY|SINE|Alu	23690	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr14.34269000.+	chr14	34269000	34269001	+	0	NA	"exon (NM_001165893, exon 11 of 11)"	"exon (NM_001165893, exon 11 of 11)"	151284	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr19.7123252.+	chr19	7123252	7123253	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53781	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr19.34958622.-	chr19	34958622	34958623	-	0	NA	"intron (NM_005499, intron 16 of 16)"	AluSx3|SINE|Alu	14258	NM_001080436	126374	Hs.585010	NM_001080436		WTIP	-	Wilms tumor 1 interacting protein	protein-coding
chr17.7077501.-	chr17	7077501	7077502	-	0	NA	"exon (NM_001197216, exon 6 of 8)"	"exon (NM_001197216, exon 6 of 8)"	-5382	NM_001671	432	Hs.731669	NM_001197216	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
chr20.57575071.-	chr20	57575071	57575072	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7238	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr2.238536283.+	chr2	238536283	238536284	+	0	NA	promoter-TSS (NM_001137550)	promoter-TSS (NM_001137550)	59	NM_001137550	9208	Hs.471779	NM_001137550	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
chr19.14202028.-	chr19	14202028	14202029	-	0	NA	promoter-TSS (NM_138352)	promoter-TSS (NM_138352)	796	NM_138352	90378	Hs.140309	NM_138352		SAMD1	-	sterile alpha motif domain containing 1	protein-coding
chr19.3068357.+	chr19	3068357	3068358	+	0	NA	Intergenic	Intergenic	-5393	NM_198969	166	Hs.515053	NM_001130	ENSG00000104964	AES	AES-1|AES-2|ESP1|GRG|GRG5|TLE5	amino-terminal enhancer of split	protein-coding
chrX.39680376.-	chrX	39680376	39680377	-	0	NA	Intergenic	CpG	-276343	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr9.120507381.-	chr9	120507381	120507382	-	0	NA	Intergenic	CpG	-40928	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr8.143206475.+	chr8	143206475	143206476	+	0	NA	Intergenic	Intergenic	-51225	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr17.35829305.-	chr17	35829305	35829306	-	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	20646	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chr1.26591556.+	chr1	26591556	26591557	+	0	NA	"intron (NM_022778, intron 7 of 13)"	AluSx1|SINE|Alu	-14657	NM_031286	83442	Hs.109051	NM_031286		SH3BGRL3	SH3BP-1|TIP-B1	SH3 domain binding glutamic acid-rich protein like 3	protein-coding
chr19.2340031.-	chr19	2340031	2340032	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11402	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr16.58288617.+	chr16	58288617	58288618	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4777	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr20.20772494.+	chr20	20772494	20772495	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79228	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr5.31018927.-	chr5	31018927	31018928	-	0	NA	Intergenic	AluY|SINE|Alu	174835	NM_004932	1004	Hs.171054	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	"cadherin 6, type 2, K-cadherin (fetal kidney)"	protein-coding
chr7.6304937.+	chr7	6304937	6304938	+	0	NA	"intron (NM_004227, intron 1 of 12)"	MER58C|DNA|hAT-Charlie	7305	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
chr1.246995866.-	chr1	246995866	246995867	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42947	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr16.12210397.-	chr16	12210397	12210398	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139795	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr17.40464875.+	chr17	40464875	40464876	+	0	NA	TTS (NM_213662)	TTS (NM_213662)	25310	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr1.151573450.-	chr1	151573450	151573451	-	0	NA	Intergenic	SVA_E|Other|Other	11212	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr2.64811861.-	chr2	64811861	64811862	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22585	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr19.11437327.+	chr19	11437327	11437328	+	0	NA	"intron (NM_004283, intron 4 of 4)"	AluJr|SINE|Alu	13017	NM_004283	9545	Hs.655274	NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	"RAB3D, member RAS oncogene family"	protein-coding
chr14.105736160.+	chr14	105736160	105736161	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20419	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr17.34257208.-	chr17	34257208	34257209	-	0	NA	promoter-TSS (NM_001163124)	promoter-TSS (NM_001163124)	-95	NR_028000	201299	Hs.194411	NM_001034836	ENSG00000187456	RDM1	RAD52B	RAD52 motif 1	protein-coding
chr19.34248500.-	chr19	34248500	34248501	-	0	NA	"intron (NM_022467, intron 2 of 3)"	(GAAA)n|Simple_repeat|Simple_repeat	39251	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr21.35774208.+	chr21	35774208	35774209	+	0	NA	Intergenic	AluSc8|SINE|Alu	26459	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr1.53324317.-	chr1	53324317	53324318	-	0	NA	"intron (NM_001004339, intron 3 of 13)"	AluSp|SINE|Alu	-16134	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr3.53225157.-	chr3	53225157	53225158	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29934	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr2.101925000.+	chr2	101925000	101925001	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	178	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr18.59561340.-	chr18	59561340	59561341	-	0	NA	Intergenic	CpG	1036	NM_173557	220441	Hs.667457	NM_173557		RNF152	-	ring finger protein 152	protein-coding
chr19.33554670.-	chr19	33554670	33554671	-	0	NA	"intron (NM_033103, intron 1 of 14)"	"intron (NM_033103, intron 1 of 14)"	-1154	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr6.123144128.-	chr6	123144128	123144129	-	0	NA	Intergenic	AluY|SINE|Alu	-34157	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr4.989207.-	chr4	989207	989208	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1983	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr5.2740821.+	chr5	2740821	2740822	+	0	NA	Intergenic	CpG	10948	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr4.190662145.+	chr4	190662145	190662146	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199829	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr2.81982191.+	chr2	81982191	81982192	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101736	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr9.26387245.+	chr9	26387245	26387246	+	0	NA	Intergenic	AluY|SINE|Alu	320572	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr5.25535448.-	chr5	25535448	25535449	-	0	NA	Intergenic	AluY|SINE|Alu	694756	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr21.46737204.+	chr21	46737204	46737205	+	0	NA	Intergenic	Intergenic	29237	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr8.22449334.-	chr8	22449334	22449335	-	0	NA	"intron (NM_176871, intron 8 of 9)"	"intron (NM_176871, intron 8 of 9)"	7780	NM_173686	541565	Hs.743508	NM_001013842	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
chr1.10727930.+	chr1	10727930	10727931	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128803	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr15.90327988.-	chr15	90327988	90327989	-	0	NA	TTS (NM_001150)	TTS (NM_001150)	-8399	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr4.39561496.-	chr4	39561496	39561497	-	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	-32037	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr19.48825124.+	chr19	48825124	48825125	+	0	NA	Intergenic	CpG	-1792	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr6.36254595.+	chr6	36254595	36254596	+	0	NA	"intron (NM_001145717, intron 1 of 7)"	AluJo|SINE|Alu	16358	NM_001145717	285848	Hs.407002	NM_001145716	ENSG00000180316	PNPLA1	ARCI10|dJ50J22.1	patatin-like phospholipase domain containing 1	protein-coding
chr1.26591558.+	chr1	26591558	26591559	+	0	NA	"intron (NM_022778, intron 7 of 13)"	AluSx1|SINE|Alu	-14655	NM_031286	83442	Hs.109051	NM_031286		SH3BGRL3	SH3BP-1|TIP-B1	SH3 domain binding glutamic acid-rich protein like 3	protein-coding
chr8.143694245.+	chr8	143694245	143694246	+	0	NA	"3' UTR (NM_015193, exon 1 of 3)"	"3' UTR (NM_015193, exon 1 of 3)"	1588	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr19.42242075.-	chr19	42242075	42242076	-	0	NA	Intergenic	AluY|SINE|Alu	17323	NM_002483	4680	Hs.466814	NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)	protein-coding
chr17.22012686.-	chr17	22012686	22012687	-	0	NA	Intergenic	Intergenic	9751	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr2.71559430.-	chr2	71559430	71559431	-	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	-545	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr8.10482248.+	chr8	10482248	10482249	+	0	NA	"intron (NM_178857, intron 1 of 3)"	"intron (NM_178857, intron 1 of 3)"	30369	NM_178857	94137	Hs.33538	NM_178857	ENSG00000183638	RP1L1	DCDC4B	retinitis pigmentosa 1-like 1	protein-coding
chr19.4455363.-	chr19	4455363	4455364	-	0	NA	promoter-TSS (NM_001171091)	promoter-TSS (NM_001171091)	68	NM_001171091	80700	Hs.435255	NM_001171091	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
chr8.128328727.-	chr8	128328727	128328728	-	0	NA	Intergenic	Intergenic	99130	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr14.23517160.-	chr14	23517160	23517161	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5784	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr19.42242088.-	chr19	42242088	42242089	-	0	NA	Intergenic	AluY|SINE|Alu	17310	NM_002483	4680	Hs.466814	NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)	protein-coding
chr7.100044633.-	chr7	100044633	100044634	-	0	NA	Intergenic	AluY|SINE|Alu	10539	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr2.128432639.+	chr2	128432639	128432640	+	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	125	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr19.4245383.-	chr19	4245383	4245384	-	0	NA	Intergenic	AluSx1|SINE|Alu	1728	NM_018074	55702	Hs.21811	NM_018074	ENSG00000105248	CCDC94	-	coiled-coil domain containing 94	protein-coding
chr9.128842638.-	chr9	128842638	128842639	-	0	NA	Intergenic	LTR7|LTR|ERV1	246485	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr5.172159012.-	chr5	172159012	172159013	-	0	NA	Intergenic	Intergenic	-39191	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
chr2.242530315.+	chr2	242530315	242530316	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	26601	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr1.108113223.-	chr1	108113223	108113224	-	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	-117903	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr1.37546482.+	chr1	37546482	37546483	+	0	NA	Intergenic	SVA_D|Other|Other	-46638	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr1.110881113.-	chr1	110881113	110881114	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-680	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr2.134028794.+	chr2	134028794	134028795	+	0	NA	"intron (NM_207363, intron 4 of 19)"	AluY|SINE|Alu	297237	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
chr6.160985686.-	chr6	160985686	160985687	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53530	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr18.29434852.-	chr18	29434852	29434853	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88239	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr7.3124557.+	chr7	3124557	3124558	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41048	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr3.188566612.+	chr3	188566612	188566613	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323151	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr17.40316780.+	chr17	40316780	40316781	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9718	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr3.164119741.+	chr3	164119741	164119742	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676542	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr12.56523211.-	chr12	56523211	56523212	-	0	NA	"intron (NM_001184796, intron 1 of 30)"	CpG	-1225	NM_001184796	23344	Hs.632729	NM_001184796	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin-like protein 1	protein-coding
chr16.89034083.-	chr16	89034083	89034084	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9421	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.239058238.-	chr2	239058238	239058239	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10875	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr19.14474443.+	chr19	14474443	14474444	+	0	NA	Intergenic	Intergenic	-17513	NM_078481	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr16.29245026.+	chr16	29245026	29245027	+	0	NA	Intergenic	Intergenic	-68582	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr7.2933070.+	chr7	2933070	2933071	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49111	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr5.641282.-	chr5	641282	641283	-	0	NA	"intron (NM_018140, intron 9 of 11)"	"intron (NM_018140, intron 9 of 11)"	-28877	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72kDa	protein-coding
chr12.121148562.-	chr12	121148562	121148563	-	0	NA	"intron (NM_001080533, intron 1 of 4)"	CpG	-324	NM_001080533	84747	Hs.127610	NM_032661	ENSG00000175970	UNC119B	POC7B	unc-119 homolog B (C. elegans)	protein-coding
chr3.164119711.+	chr3	164119711	164119712	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676572	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chrX.88129125.+	chrX	88129125	88129126	+	0	NA	Intergenic	AluY|SINE|Alu	126899	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr6.41339360.-	chr6	41339360	41339361	-	0	NA	Intergenic	CpG	-35832	NM_001199510	9436	Hs.194721	NM_001199509	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
chr1.145400450.+	chr1	145400450	145400451	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12741	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr1.154218122.-	chr1	154218122	154218123	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	AluY|SINE|Alu	-24797	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr3.112280184.+	chr3	112280184	112280185	+	0	NA	promoter-TSS (NM_017945)	promoter-TSS (NM_017945)	301	NM_022488	64422	Hs.477126	NM_022488		ATG3	APG3|APG3-LIKE|APG3L|PC3-96	autophagy related 3	protein-coding
chr19.33554702.-	chr19	33554702	33554703	-	0	NA	"intron (NM_033103, intron 1 of 14)"	GC_rich|Low_complexity|Low_complexity	-1122	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr19.1809848.-	chr19	1809848	1809849	-	0	NA	"intron (NR_047593, intron 3 of 28)"	"intron (NR_047593, intron 3 of 28)"	-2388	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr4.41386509.+	chr4	41386509	41386510	+	0	NA	"intron (NM_001112717, intron 1 of 25)"	AluY|SINE|Alu	23705	NM_001112718	22998	Hs.335163	NM_001112717	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
chr5.17207782.+	chr5	17207782	17207783	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9150	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr9.47260203.-	chr9	47260203	47260204	-	0	NA	Intergenic	AluY|SINE|Alu	-430913	NR_046203	643648	Hs.742595	NR_046203		LOC643648	-	uncharacterized LOC643648	miscRNA
chr18.44499440.+	chr18	44499440	44499441	+	0	NA	Intergenic	AluSp|SINE|Alu	-1945	NM_004671	9063	Hs.657844	NM_004671		PIAS2	ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4	"protein inhibitor of activated STAT, 2"	protein-coding
chr17.57868953.+	chr17	57868953	57868954	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49674	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr20.61425563.-	chr20	61425563	61425564	-	0	NA	Intergenic	Intergenic	2242	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr1.147533454.+	chr1	147533454	147533455	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-49123	NR_003377	728939	Hs.696575	NR_003377	ENSG00000215860	PDZK1P1	-	PDZ domain containing 1 pseudogene 1	pseudo
chr6.149638275.+	chr6	149638275	149638276	+	0	NA	Intergenic	CpG	-1161	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr19.36744762.-	chr19	36744762	36744763	-	0	NA	Intergenic	AluY|SINE|Alu	38776	NM_001042474	147929	Hs.596338	NM_001042474	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
chr1.161393131.+	chr1	161393131	161393132	+	0	NA	Intergenic	SVA_D|Other|Other	-55458	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chrX.122993640.-	chrX	122993640	122993641	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	22	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr11.119091839.+	chr11	119091839	119091840	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14853	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr5.1494495.-	chr5	1494495	1494496	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29581	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr16.723815.+	chr16	723815	723816	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2260	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr1.171662961.+	chr1	171662961	171662962	+	0	NA	Intergenic	SVA_C|Other|Other	-41188	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr19.5148583.-	chr19	5148583	5148584	-	0	NA	"intron (NM_015015, intron 21 of 22)"	"intron (NM_015015, intron 21 of 22)"	-179459	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr2.170666393.+	chr2	170666393	170666394	+	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	11071	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr10.104255183.+	chr10	104255183	104255184	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7329	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr16.70356405.+	chr16	70356405	70356406	+	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	23343	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr17.18284778.+	chr17	18284778	18284779	+	0	NA	"exon (NM_001145127, exon 3 of 11)"	"exon (NM_001145127, exon 3 of 11)"	3699	NM_001145127	645027	Hs.462400	NM_001145127	ENSG00000214860	EVPLL	-	envoplakin-like	protein-coding
chrX.39680400.-	chrX	39680400	39680401	-	0	NA	Intergenic	CpG	-276319	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr14.23706368.+	chr14	23706368	23706369	+	0	NA	Intergenic	AluSz|SINE|Alu	48941	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr10.17622283.-	chr10	17622283	17622284	-	0	NA	Intergenic	AluY|SINE|Alu	-37090	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr15.31566360.+	chr15	31566360	31566361	+	0	NA	Intergenic	AluY|SINE|Alu	-43310	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chr19.609216.+	chr19	609216	609217	+	0	NA	"intron (NM_001194, intron 4 of 7)"	"intron (NM_001194, intron 4 of 7)"	19323	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr8.6644917.-	chr8	6644917	6644918	-	0	NA	Intergenic	AluY|SINE|Alu	42156	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr8.101661658.+	chr8	101661658	101661659	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	235	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr19.10408182.+	chr19	10408182	10408183	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7527	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr7.5583891.-	chr7	5583891	5583892	-	0	NA	Intergenic	AluY|SINE|Alu	13659	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr16.1815024.+	chr16	1815024	1815025	+	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	6686	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr22.49948722.-	chr22	49948722	49948723	-	0	NA	Intergenic	Intergenic	-102468	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr6.2233013.-	chr6	2233013	2233014	-	0	NA	"intron (NM_001500, intron 1 of 10)"	"intron (NM_001500, intron 1 of 10)"	-12855	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chrX.48871411.-	chrX	48871411	48871412	-	0	NA	Intergenic	AluY|SINE|Alu	12736	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chrM.16392.+	chrM	16392	16393	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.42642497.+	chr3	42642497	42642498	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	75	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chrX.48871404.+	chrX	48871404	48871405	+	0	NA	Intergenic	AluY|SINE|Alu	-12729	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr6.150413242.-	chr6	150413242	150413243	-	0	NA	Intergenic	AluY|SINE|Alu	23040	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr9.13278346.-	chr9	13278346	13278347	-	0	NA	"intron (NM_001261406, intron 1 of 45)"	CpG	-1217	NM_001261406	8777	Hs.169378	NM_001261406	ENSG00000107186	MPDZ	MUPP1	multiple PDZ domain protein	protein-coding
chr10.120515392.+	chr10	120515392	120515393	+	0	NA	promoter-TSS (NM_153810)	promoter-TSS (NM_153810)	-634	NM_153810	143384	Hs.420024	NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	"CDK2-associated, cullin domain 1"	protein-coding
chr2.119611335.-	chr2	119611335	119611336	-	0	NA	Intergenic	CpG	5576	NM_001426	2019	Hs.271977	NM_001426	ENSG00000163064	EN1	-	engrailed homeobox 1	protein-coding
chr5.78890164.+	chr5	78890164	78890165	+	0	NA	Intergenic	AluY|SINE|Alu	-18079	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr12.50919162.+	chr12	50919162	50919163	+	0	NA	"intron (NM_173602, intron 1 of 37)"	L2a|LINE|L2	20394	NM_173602	57609	Hs.505516	NM_173602	ENSG00000066084	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
chr3.104745280.+	chr3	104745280	104745281	+	0	NA	Intergenic	AluY|SINE|Alu	-340277	NM_001243283	214	Hs.740441	NM_001243280	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
chr17.48631006.+	chr17	48631006	48631007	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6556	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr19.13497335.+	chr19	13497335	13497336	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119939	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr10.35223735.-	chr10	35223735	35223736	-	0	NA	Intergenic	AluSx4|SINE|Alu	119482	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr7.5396370.+	chr7	5396370	5396371	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66807	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr3.47744676.+	chr3	47744676	47744677	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78729	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chrX.53808218.+	chrX	53808218	53808219	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94521	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr17.60781343.-	chr17	60781343	60781344	-	0	NA	"intron (NM_001100875, intron 10 of 10)"	CpG	17515	NR_036146	100422923		NR_036146		MIR548W	-	microRNA 548w	miscRNA
chr22.46326791.-	chr22	46326791	46326792	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46217	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr9.131293113.-	chr9	131293113	131293114	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21724	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr17.40316743.-	chr17	40316743	40316744	-	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	9681	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr9.72101703.-	chr9	72101703	72101704	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157462	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr2.236490306.+	chr2	236490306	236490307	+	0	NA	"intron (NM_001037131, intron 1 of 17)"	AluSx|SINE|Alu	87573	NM_001244888	116987	Hs.435039	NM_001037131	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1"	protein-coding
chrX.144902938.-	chrX	144902938	144902939	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-72	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr16.21611374.+	chr16	21611374	21611375	+	0	NA	"intron (NM_001077180, intron 1 of 4)"	CpG	518	NM_016025	51108	Hs.279583	NM_001077180	ENSG00000197006	METTL9	DREV|DREV1|PAP1	methyltransferase like 9	protein-coding
chr17.10170476.+	chr17	10170476	10170477	+	0	NA	Intergenic	AluY|SINE|Alu	-68608	NM_201433	8522	Hs.462214	NM_001130831	ENSG00000007237	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
chr19.7752404.+	chr19	7752404	7752405	+	0	NA	Intergenic	MIR|SINE|MIR	6697	NM_001042462	126003	Hs.432413	NM_001042461	ENSG00000181029	TRAPPC5	TRS31	trafficking protein particle complex 5	protein-coding
chr12.109745044.+	chr12	109745044	109745045	+	0	NA	"intron (NM_213596, intron 2 of 9)"	"intron (NM_213596, intron 2 of 9)"	1981	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
chr16.84879527.+	chr16	84879527	84879528	+	0	NA	"intron (NM_031476, intron 3 of 14)"	"intron (NM_031476, intron 3 of 14)"	25940	NM_031476	83716	Hs.617091	NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
chr1.15927955.-	chr1	15927955	15927956	-	0	NA	Intergenic	AluSg4|SINE|Alu	15998	NM_032341	84301	Hs.718857	NM_032341		DDI2	RP4-680D5.5	DNA-damage inducible 1 homolog 2 (S. cerevisiae)	protein-coding
chr7.5062039.+	chr7	5062039	5062040	+	0	NA	Intergenic	AluY|SINE|Alu	-23413	NM_001204513	100533952	Hs.396178	NM_001204513	ENSG00000146587	RBAK-LOC389458	-	RBAK-LOC389458 readthrough	protein-coding
chr3.98624709.+	chr3	98624709	98624710	+	0	NA	Intergenic	AluY|SINE|Alu	-4176	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr3.13696868.-	chr3	13696868	13696869	-	0	NA	"intron (NR_027103, intron 1 of 5)"	CpG	-4647	NR_027103	285375	Hs.319969	NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	miscRNA
chr18.21826673.+	chr18	21826673	21826674	+	0	NA	"intron (NM_001242508, intron 3 of 15)"	AluSx|SINE|Alu	25523	NM_018030	114876	Hs.370725	NM_001242508	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
chr11.5315867.-	chr11	5315867	5315868	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7309	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chrM.6447.+	chrM	6447	6448	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.178267547.-	chr2	178267547	178267548	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10076	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr7.2352690.-	chr7	2352690	2352691	-	0	NA	"intron (NM_013321, intron 1 of 10)"	AluY|SINE|Alu	-1409	NM_013321	29886	Hs.584900	NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
chr2.61307002.+	chr2	61307002	61307003	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13639	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr2.97168914.-	chr2	97168914	97168915	-	0	NA	"intron (NR_026875, intron 1 of 3)"	"intron (NR_026875, intron 1 of 3)"	-4932	NR_026875	93082	Hs.149219	NR_026875	ENSG00000163121	NEURL3	LINCR	neuralized homolog 3 (Drosophila) pseudogene	pseudo
chrX.153657109.+	chrX	153657109	153657110	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	131	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr19.45454656.+	chr19	45454656	45454657	+	0	NA	Intergenic	Intergenic	-3186	NR_040007	1209	Hs.444441	NM_001199468	ENSG00000104853	CLPTM1	-	cleft lip and palate associated transmembrane protein 1	protein-coding
chr9.92020710.-	chr9	92020710	92020711	-	0	NA	"intron (NM_001142287, intron 4 of 20)"	"intron (NM_001142287, intron 4 of 20)"	-73901	NM_006378	10507	Hs.494406	NM_182635	ENSG00000187764	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D"	protein-coding
chr7.13141832.-	chr7	13141832	13141833	-	0	NA	Intergenic	SVA_D|Other|Other	-414921	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chrX.18849769.-	chrX	18849769	18849770	-	0	NA	Intergenic	AluY|SINE|Alu	58645	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr8.26532446.-	chr8	26532446	26532447	-	0	NA	Intergenic	AluSp|SINE|Alu	-96525	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr7.73832134.-	chr7	73832134	73832135	-	0	NA	Intergenic	Intergenic	35986	NM_016328	9569	Hs.647056	NM_001199207	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
chrX.23801556.-	chrX	23801556	23801557	-	0	NA	"intron (NR_027783, intron 1 of 6)"	CpG	-281	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr21.43198294.-	chr21	43198294	43198295	-	0	NA	Intergenic	Intergenic	11045	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr10.12344450.-	chr10	12344450	12344451	-	0	NA	Intergenic	AluSc8|SINE|Alu	47133	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr9.34070410.-	chr9	34070410	34070411	-	0	NA	Intergenic	Intergenic	21463	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr21.14392463.+	chr21	14392463	14392464	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18024	NR_026916	149992	Hs.579474	NR_026916		ANKRD30BP2	C21orf99|CT85|CTSP-1|CTSP1	ankyrin repeat domain 30B pseudogene 2	pseudo
chr12.43781886.+	chr12	43781886	43781887	+	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	163838	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr19.7023121.-	chr19	7023121	7023122	-	0	NA	Intergenic	Intergenic	7473	NM_001136507	284428	Hs.717312	NM_001136507	ENSG00000237247	MBD3L5	-	methyl-CpG binding domain protein 3-like 5	protein-coding
chr2.86948249.-	chr2	86948249	86948250	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	4	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr19.4969374.-	chr19	4969374	4969375	-	0	NA	"intron (NM_015015, intron 1 of 22)"	CpG	-250	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr12.132389098.+	chr12	132389098	132389099	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9819	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr7.73456640.+	chr7	73456640	73456641	+	0	NA	"intron (NM_001081753, intron 5 of 30)"	AluJb|SINE|Alu	14213	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr12.8777861.-	chr12	8777861	8777862	-	0	NA	Intergenic	Intergenic	12419	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr6.19648255.-	chr6	19648255	19648256	-	0	NA	Intergenic	AluY|SINE|Alu	189346	NM_001546	3400	Hs.731649	NM_001546		ID4	IDB4|bHLHb27	"inhibitor of DNA binding 4, dominant negative helix-loop-helix protein"	protein-coding
chr6.31211959.+	chr6	31211959	31211960	+	0	NA	Intergenic	SVA_F|Other|Other	27954	NM_001243042	3107	Hs.743218	NM_001243042	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLC-C|PSORS1	"major histocompatibility complex, class I, C"	protein-coding
chr6.105414619.-	chr6	105414619	105414620	-	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	-9696	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr4.38809158.-	chr4	38809158	38809159	-	0	NA	Intergenic	SVA_D|Other|Other	2746	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr16.33966289.-	chr16	33966289	33966290	-	0	NA	Intergenic	CpG	3786	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr8.144503747.-	chr8	144503747	144503748	-	0	NA	Intergenic	CpG	-8855	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.31932489.-	chr16	31932489	31932490	-	0	NA	Intergenic	AluY|SINE|Alu	-47410	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr3.188566610.+	chr3	188566610	188566611	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323153	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr20.5213463.+	chr20	5213463	5213464	+	0	NA	Intergenic	AluJr4|SINE|Alu	81552	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr1.59041976.+	chr1	59041976	59041977	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1190	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr12.133081829.-	chr12	133081829	133081830	-	0	NA	"intron (NM_001142641, intron 1 of 16)"	"intron (NM_001142641, intron 1 of 16)"	-14672	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr2.58008313.+	chr2	58008313	58008314	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265464	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr19.23432265.+	chr19	23432265	23432266	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	907	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr11.62418863.+	chr11	62418863	62418864	+	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	1911	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr2.21484725.+	chr2	21484725	21484726	+	0	NA	Intergenic	Intergenic	-217780	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr8.95654273.-	chr8	95654273	95654274	-	0	NA	"exon (NM_017697, exon 2 of 16)"	"exon (NM_017697, exon 2 of 16)"	-909	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr6.158244970.+	chr6	158244970	158244971	+	0	NA	"intron (NM_016224, intron 1 of 17)"	CpG	676	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	MST155|MSTP155|SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
chr13.78272342.+	chr13	78272342	78272343	+	0	NA	promoter-TSS (NM_001040153)	promoter-TSS (NM_001040153)	-91	NR_037438	100500861		NR_037438	ENSG00000266325	MIR3665	-	microRNA 3665	miscRNA
chr7.23478930.-	chr7	23478930	23478931	-	0	NA	"intron (NM_006547, intron 2 of 14)"	AluYf4|SINE|Alu	-31065	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
chr15.75701816.-	chr15	75701816	75701817	-	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	40848	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr2.191771952.-	chr2	191771952	191771953	-	0	NA	"intron (NM_001256310, intron 6 of 14)"	"intron (NM_001256310, intron 6 of 14)"	-26405	NM_014905	2744	Hs.737608	NM_001256310	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
chr17.46186987.+	chr17	46186987	46186988	+	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	2040	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr8.6644933.-	chr8	6644933	6644934	-	0	NA	Intergenic	AluY|SINE|Alu	42172	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr15.75840697.-	chr15	75840697	75840698	-	0	NA	"intron (NM_002833, intron 1 of 12)"	AluSq2|SINE|Alu	-30928	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	"protein tyrosine phosphatase, non-receptor type 9"	protein-coding
chrX.15337013.-	chrX	15337013	15337014	-	0	NA	TTS (NM_002641)	TTS (NM_002641)	3267	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr19.2400845.+	chr19	2400845	2400846	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11061	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr9.37378526.-	chr9	37378526	37378527	-	0	NA	Intergenic	Intergenic	44181	NM_012203	9380	Hs.155742	NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate reductase/hydroxypyruvate reductase	protein-coding
chr12.112407458.+	chr12	112407458	112407459	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43565	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr18.67270872.-	chr18	67270872	67270873	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202588	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr19.58310325.-	chr19	58310325	58310326	-	0	NA	Intergenic	AluY|SINE|Alu	-15956	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr22.40126818.-	chr22	40126818	40126819	-	0	NA	Intergenic	AluY|SINE|Alu	-160060	NM_001003406	8911	Hs.125116	NM_001003406	ENSG00000100346	CACNA1I	Cav3.3|ca(v)3.3	"calcium channel, voltage-dependent, T type, alpha 1I subunit"	protein-coding
chr10.14719524.-	chr10	14719524	14719525	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97372	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr16.4835195.-	chr16	4835195	4835196	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3203	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr16.3203772.+	chr16	3203772	3203773	+	0	NA	Intergenic	AluSg|SINE|Alu	18638	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr7.33164257.-	chr7	33164257	33164258	-	0	NA	Intergenic	AluYf5|SINE|Alu	4895	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr2.213546620.-	chr2	213546620	213546621	-	0	NA	Intergenic	AluSc8|SINE|Alu	143268	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr16.29422133.+	chr16	29422133	29422134	+	0	NA	Intergenic	AluSx|SINE|Alu	-38533	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr11.2891028.+	chr11	2891028	2891029	+	0	NA	promoter-TSS (NR_024627)	promoter-TSS (NR_024627)	-235	NR_024627	55539	Hs.127821	NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor (non-protein coding)	miscRNA
chr15.76627286.+	chr15	76627286	76627287	+	0	NA	Intergenic	AluSg|SINE|Alu	-1861	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr10.324354.-	chr10	324354	324355	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98420	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr8.12476336.-	chr8	12476336	12476337	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46784	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr3.42642388.-	chr3	42642388	42642389	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-184	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr19.4054437.-	chr19	4054437	4054438	-	0	NA	"exon (NM_015898, exon 2 of 3)"	"exon (NM_015898, exon 2 of 3)"	-12379	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr11.41260589.+	chr11	41260589	41260590	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220597	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr9.11197020.-	chr9	11197020	11197021	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584297	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr13.21644834.-	chr13	21644834	21644835	-	0	NA	Intergenic	AluSx|SINE|Alu	9112	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr2.240675400.-	chr2	240675400	240675401	-	0	NA	Intergenic	Intergenic	9154	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chr7.1798889.+	chr7	1798889	1798890	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50091	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr19.35790646.-	chr19	35790646	35790647	-	0	NA	"exon (NM_001199216, exon 5 of 11)"	"exon (NM_001199216, exon 5 of 11)"	-7657	NM_001199216	4099	Hs.643440	NM_001199216	ENSG00000105695	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4A	myelin associated glycoprotein	protein-coding
chr11.118479235.-	chr11	118479235	118479236	-	0	NA	"intron (NM_001144759, intron 1 of 20)"	CpG	-929	NM_001144758	23187	Hs.504062	NM_001144758	ENSG00000019144	PHLDB1	LL5A	"pleckstrin homology-like domain, family B, member 1"	protein-coding
chr17.583138.-	chr17	583138	583139	-	0	NA	"intron (NM_001128159, intron 4 of 21)"	AluSx|SINE|Alu	-34958	NM_001128159	55275	Hs.461819	NM_001128159	ENSG00000141252	VPS53	HCCS1|hVps53L|pp13624	vacuolar protein sorting 53 homolog (S. cerevisiae)	protein-coding
chr12.1044024.+	chr12	1044024	1044025	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14839	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr14.96857612.+	chr14	96857612	96857613	+	0	NA	promoter-TSS (NM_152327)	promoter-TSS (NM_152327)	-836	NM_152327	122481	Hs.667462	NM_152327	ENSG00000140057	AK7	-	adenylate kinase 7	protein-coding
chr2.21484717.+	chr2	21484717	21484718	+	0	NA	Intergenic	Intergenic	-217772	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr16.3733098.-	chr16	3733098	3733099	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30158	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr18.12559349.-	chr18	12559349	12559350	-	0	NA	"intron (NM_001128627, intron 2 of 15)"	LTR12C|LTR|ERV1	-97382	NM_001128627	56907	Hs.515283	NM_001128626	ENSG00000134278	SPIRE1	Spir-1	spire homolog 1 (Drosophila)	protein-coding
chr10.120841967.+	chr10	120841967	120841968	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1633	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr10.120946153.-	chr10	120946153	120946154	-	0	NA	Intergenic	AluY|SINE|Alu	7808	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr15.92290012.-	chr15	92290012	92290013	-	0	NA	Intergenic	AluY|SINE|Alu	106926	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr12.92086128.+	chr12	92086128	92086129	+	0	NA	Intergenic	AluSx3|SINE|Alu	449361	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr12.113494344.+	chr12	113494344	113494345	+	0	NA	Intergenic	Intergenic	-1318	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chrX.30907058.+	chrX	30907058	30907059	+	0	NA	"intron (NM_152787, intron 1 of 10)"	CpG	453	NM_152787	257397	Hs.188256	NM_152787	ENSG00000157625	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding
chr5.180198329.+	chr5	180198329	180198330	+	0	NA	Intergenic	SVA_D|Other|Other	-31271	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr14.75098120.+	chr14	75098120	75098121	+	0	NA	Intergenic	Intergenic	-19086	NM_000428	4053	Hs.597522	NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
chr19.18075073.+	chr19	18075073	18075074	+	0	NA	"intron (NM_002248, intron 2 of 10)"	"intron (NM_002248, intron 2 of 10)"	12962	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr16.70715365.-	chr16	70715365	70715366	-	0	NA	"intron (NM_138383, intron 1 of 14)"	"intron (NM_138383, intron 1 of 14)"	-4589	NM_138383	92154	Hs.432387	NM_138383	ENSG00000132613	MTSS1L	ABBA-1	metastasis suppressor 1-like	protein-coding
chr1.181058712.-	chr1	181058712	181058713	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1074	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr2.233274541.-	chr2	233274541	233274542	-	0	NA	"exon (NM_031313, exon 11 of 11)"	"exon (NM_031313, exon 11 of 11)"	-2989	NM_031313	251	Hs.333509	NM_031313	ENSG00000163286	ALPPL2	ALPG|ALPPL|GCAP	"alkaline phosphatase, placental-like 2"	protein-coding
chr6.24720983.+	chr6	24720983	24720984	+	0	NA	Intergenic	CpG	-1580	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr15.41613155.+	chr15	41613155	41613156	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11664	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr2.43254212.+	chr2	43254212	43254213	+	0	NA	Intergenic	Intergenic	199533	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr22.17719112.-	chr22	17719112	17719113	-	0	NA	Intergenic	AluSg|SINE|Alu	28333	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr2.27526275.+	chr2	27526275	27526276	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4855	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr14.105560403.-	chr14	105560403	105560404	-	0	NA	Intergenic	CpG	28649	NM_013345	29933	Hs.532504	NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
chr17.40688161.-	chr17	40688161	40688162	-	0	NA	"5' UTR (NM_000263, exon 1 of 6)"	"5' UTR (NM_000263, exon 1 of 6)"	-210	NM_000263	4669	Hs.50727	NM_000263	ENSG00000108784	NAGLU	MPS-IIIB|MPS3B|NAG|UFHSD	"N-acetylglucosaminidase, alpha"	protein-coding
chr17.2721916.-	chr17	2721916	2721917	-	0	NA	"intron (NM_015085, intron 2 of 24)"	AluSz|SINE|Alu	-22184	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr2.232078213.-	chr2	232078213	232078214	-	0	NA	"intron (NM_025139, intron 3 of 20)"	AluSg|SINE|Alu	-14919	NM_001271466	80210	Hs.471610	NM_001271466	ENSG00000135931	ARMC9	ARM|KU-MEL-1	armadillo repeat containing 9	protein-coding
chr12.66636820.+	chr12	66636820	66636821	+	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	53842	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr12.58059255.+	chr12	58059255	58059256	+	0	NA	Intergenic	SVA_A|Other|Other	-28483	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr5.29531052.-	chr5	29531052	29531053	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604075	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr15.65145645.+	chr15	65145645	65145646	+	0	NA	"intron (NM_025201, intron 2 of 5)"	AluY|SINE|Alu	11563	NM_025201	80301	Hs.709337	NM_001195059	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	"pleckstrin homology domain containing, family O member 2"	protein-coding
chr9.38829850.-	chr9	38829850	38829851	-	0	NA	Intergenic	AluY|SINE|Alu	-208765	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr18.12734559.-	chr18	12734559	12734560	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31572	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr1.54269522.+	chr1	54269522	54269523	+	0	NA	"intron (NR_033142, intron 9 of 16)"	AluY|SINE|Alu	34703	NM_018087	55706	Hs.476525	NM_001168551	ENSG00000058804	TMEM48	NDC1|NET3	transmembrane protein 48	protein-coding
chr15.41539527.-	chr15	41539527	41539528	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16090	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr5.179167556.-	chr5	179167556	179167557	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7705	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr16.3203701.+	chr16	3203701	3203702	+	0	NA	Intergenic	AluSg|SINE|Alu	18567	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr2.10424792.+	chr2	10424792	10424793	+	0	NA	Intergenic	Intergenic	-18238	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr17.45349570.+	chr17	45349570	45349571	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18362	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr12.130340706.+	chr12	130340706	130340707	+	0	NA	"intron (NM_133448, intron 1 of 8)"	CpG	47506	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr12.118812044.+	chr12	118812044	118812045	+	0	NA	Intergenic	AluSx|SINE|Alu	-1294	NM_016281	51347	Hs.644420	NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
chr6.170605161.-	chr6	170605161	170605162	-	0	NA	Intergenic	CpG	5464	NM_005618	28514	Hs.379912	NM_005618	ENSG00000198719	DLL1	DELTA1|DL1|Delta	delta-like 1 (Drosophila)	protein-coding
chr5.69056936.-	chr5	69056936	69056937	-	0	NA	Intergenic	AluYa5|SINE|Alu	50664	NR_027386	653188	Hs.654588	NR_027386	ENSG00000253203	GUSBP3	-	"glucuronidase, beta pseudogene 3"	pseudo
chr12.121942787.+	chr12	121942787	121942788	+	0	NA	"intron (NM_032590, intron 11 of 22)"	AluY|SINE|Alu	75577	NM_001005366	84678	Hs.524800	NM_001005366	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine (K)-specific demethylase 2B	protein-coding
chr12.114123416.-	chr12	114123416	114123417	-	0	NA	Intergenic	Intergenic	213539	NM_022363	64211	Hs.302029	NM_022363		LHX5	-	LIM homeobox 5	protein-coding
chr17.3857920.-	chr17	3857920	3857921	-	0	NA	"intron (NM_174955, intron 1 of 21)"	AluSg|SINE|Alu	-9838	NM_174957	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	"ATPase, Ca++ transporting, ubiquitous"	protein-coding
chr19.14156336.-	chr19	14156336	14156337	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13635	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr19.41641948.-	chr19	41641948	41641949	-	0	NA	Intergenic	CpG	-21595	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr15.55728149.+	chr15	55728149	55728150	+	0	NA	"intron (NR_037923, intron 6 of 15)"	AluSp|SINE|Alu	27426	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr5.139145018.-	chr5	139145018	139145019	-	0	NA	Intergenic	Intergenic	30388	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
chr7.727461.-	chr7	727461	727462	-	0	NA	"intron (NM_002735, intron 2 of 10)"	AluSx1|SINE|Alu	-24700	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr2.192542794.+	chr2	192542794	192542795	+	0	NA	promoter-TSS (NM_001254736)	promoter-TSS (NM_001254736)	-4	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr1.5762929.+	chr1	5762929	5762930	+	0	NA	Intergenic	AluSp|SINE|Alu	138798	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	miscRNA
chr9.1044863.+	chr9	1044863	1044864	+	0	NA	Intergenic	Intergenic	-5483	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr10.134000487.+	chr10	134000487	134000488	+	0	NA	promoter-TSS (NM_006426)	promoter-TSS (NM_006426)	73	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr8.144512837.-	chr8	144512837	144512838	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	235	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr6.11933336.+	chr6	11933336	11933337	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-79388	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr9.7934836.+	chr9	7934836	7934837	+	0	NA	Intergenic	AluY|SINE|Alu	-135037	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr11.3224485.+	chr11	3224485	3224486	+	0	NA	Intergenic	Intergenic	-15077	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr18.43787449.-	chr18	43787449	43787450	-	0	NA	"intron (NM_001008239, intron 1 of 3)"	AluSg|SINE|Alu	-33461	NM_145055	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr3.197463432.-	chr3	197463432	197463433	-	0	NA	"intron (NM_001145642, intron 1 of 20)"	CpG	-341	NM_014687	9711	Hs.478868	NM_014687	ENSG00000145016	KIAA0226	RUBICON	KIAA0226	protein-coding
chr19.1809857.+	chr19	1809857	1809858	+	0	NA	"intron (NR_047593, intron 3 of 28)"	"intron (NR_047593, intron 3 of 28)"	2379	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr3.122695699.-	chr3	122695699	122695700	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	718	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr7.13901784.-	chr7	13901784	13901785	-	0	NA	Intergenic	AluY|SINE|Alu	-124355	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr5.133831535.-	chr5	133831535	133831536	-	0	NA	Intergenic	AluY|SINE|Alu	30263	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr19.6945115.-	chr19	6945115	6945116	-	0	NA	Intergenic	AluY|SINE|Alu	-45742	NR_024075	326342	Hs.688043	NR_024075	ENSG00000268758	EMR4P	EMR4|FIRE|GPR127|PGR16	"egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene"	pseudo
chr14.93399003.-	chr14	93399003	93399004	-	0	NA	"exon (NM_001275, exon 7 of 8)"	"exon (NM_001275, exon 7 of 8)"	-9558	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
chr9.425366.+	chr9	425366	425367	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44928	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr19.35418170.-	chr19	35418170	35418171	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-363	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr10.126538767.-	chr10	126538767	126538768	-	0	NA	Intergenic	AluSx|SINE|Alu	-48413	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr10.120427011.-	chr10	120427011	120427012	-	0	NA	Intergenic	AluSp|SINE|Alu	71851	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr10.135031532.-	chr10	135031532	135031533	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12246	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr16.12223895.-	chr16	12223895	12223896	-	0	NA	"intron (NM_032167, intron 13 of 20)"	AluSc8|SINE|Alu	-153293	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr19.267138.+	chr19	267138	267139	+	0	NA	Intergenic	CpG	24031	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr6.141000302.+	chr6	141000302	141000303	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4649	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr16.81174925.+	chr16	81174925	81174926	+	0	NA	"exon (NM_052892, exon 31 of 43)"	"exon (NM_052892, exon 31 of 43)"	-44945	NM_004483	2653	Hs.546256	NM_004483	ENSG00000140905	GCSH	GCE|NKH	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
chr17.74894573.-	chr17	74894573	74894574	-	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	-25844	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr16.1542165.+	chr16	1542165	1542166	+	0	NA	Intergenic	L2a|LINE|L2	-1187	NM_016111	9894	Hs.271044	NM_016111	ENSG00000100726	TELO2	CLK2|TEL2	"TEL2, telomere maintenance 2, homolog (S. cerevisiae)"	protein-coding
chr5.3324795.+	chr5	3324795	3324796	+	0	NA	Intergenic	CpG	211413	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr14.104015078.+	chr14	104015078	104015079	+	0	NA	Intergenic	Intergenic	13577	NM_001015049	9529	Hs.5443	NM_001015048	ENSG00000166170	BAG5	BAG-5	BCL2-associated athanogene 5	protein-coding
chr9.4490554.-	chr9	4490554	4490555	-	0	NA	"5' UTR (NM_004170, exon 1 of 12)"	"5' UTR (NM_004170, exon 1 of 12)"	-127	NM_004170	6505	Hs.444915	NM_004170	ENSG00000106688	SLC1A1	EAAC1|EAAT3	"solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1"	protein-coding
chr9.130966272.+	chr9	130966272	130966273	+	0	NA	"intron (NM_001005336, intron 1 of 21)"	CpG	390	NM_012127	25792	Hs.212395	NM_001131015	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
chr3.111578350.-	chr3	111578350	111578351	-	0	NA	promoter-TSS (NM_001134439)	promoter-TSS (NM_001134439)	218	NM_001134439	90102	Hs.679140	NM_001134437	ENSG00000144824	PHLDB2	LL5b|LL5beta	"pleckstrin homology-like domain, family B, member 2"	protein-coding
chr20.44897209.+	chr20	44897209	44897210	+	0	NA	"intron (NM_021248, intron 1 of 11)"	"intron (NM_021248, intron 1 of 11)"	39928	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	"cadherin 22, type 2"	protein-coding
chr5.40798333.-	chr5	40798333	40798334	-	0	NA	promoter-TSS (NM_006251)	promoter-TSS (NM_006251)	36	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr16.31448992.-	chr16	31448992	31448993	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5356	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chrX.54834954.+	chrX	54834954	54834955	+	0	NA	promoter-TSS (NM_201222)	promoter-TSS (NM_201222)	157	NM_014599	10916	Hs.522665	NM_014599	ENSG00000102316	MAGED2	11B6|BCG1|HCA10|JCL-1|MAGE-D2|MAGED	"melanoma antigen family D, 2"	protein-coding
chrX.41372118.+	chrX	41372118	41372119	+	0	NA	Intergenic	AluSq2|SINE|Alu	65405	NM_022567	60506	Hs.302019	NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
chr8.86544441.-	chr8	86544441	86544442	-	0	NA	Intergenic	AluSp|SINE|Alu	-23464	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chrX.81762751.+	chrX	81762751	81762752	+	0	NA	Intergenic	AluY|SINE|Alu	-1000518	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr14.23517074.-	chr14	23517074	23517075	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5698	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr15.24084665.-	chr15	24084665	24084666	-	0	NA	Intergenic	AluY|SINE|Alu	152215	NM_002487	4692	Hs.50130	NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	"necdin, melanoma antigen (MAGE) family member"	protein-coding
chr8.144512829.-	chr8	144512829	144512830	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	227	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr13.112726525.+	chr13	112726525	112726526	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4612	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr6.126111895.-	chr6	126111895	126111896	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	14	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr22.50311886.-	chr22	50311886	50311887	-	0	NA	promoter-TSS (NM_024324)	promoter-TSS (NM_024324)	-220	NM_024105	79087	Hs.526711	NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	"ALG12, alpha-1,6-mannosyltransferase"	protein-coding
chr19.22037720.-	chr19	22037720	22037721	-	0	NA	Intergenic	AluSc8|SINE|Alu	2850	NM_001256653	7594	Hs.534365	NM_001256648	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
chr16.2839394.+	chr16	2839394	2839395	+	0	NA	Intergenic	AluSc|SINE|Alu	-2686	NM_152891	260429	Hs.280658	NM_152891	ENSG00000103355	PRSS33	EOS	"protease, serine, 33"	protein-coding
chr4.185174140.+	chr4	185174140	185174141	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35026	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr20.14910706.-	chr20	14910706	14910707	-	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	545	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr17.72203106.-	chr17	72203106	72203107	-	0	NA	"intron (NM_001035258, intron 3 of 4)"	AluY|SINE|Alu	-3311	NM_001035258	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr9.16914699.+	chr9	16914699	16914700	+	0	NA	Intergenic	AluY|SINE|Alu	-43913	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr2.55496460.+	chr2	55496460	55496461	+	0	NA	promoter-TSS (NM_002453)	promoter-TSS (NM_002453)	-76	NM_002453	4528	Hs.149894	NM_001005369	ENSG00000085760	MTIF2	-	mitochondrial translational initiation factor 2	protein-coding
chr6.158438959.+	chr6	158438959	158438960	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	879	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr8.1321532.-	chr8	1321532	1321533	-	0	NA	Intergenic	CpG	70705	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr12.123921355.-	chr12	123921355	123921356	-	0	NA	promoter-TSS (NM_145058)	promoter-TSS (NM_145058)	91	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr19.1045830.+	chr19	1045830	1045831	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5728	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr14.21741095.-	chr14	21741095	21741096	-	0	NA	Intergenic	AluSx1|SINE|Alu	3457	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr2.237068244.+	chr2	237068244	237068245	+	0	NA	Intergenic	CpG	8408	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr7.64486041.+	chr7	64486041	64486042	+	0	NA	Intergenic	AluY|SINE|Alu	-12691	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr12.34191982.-	chr12	34191982	34191983	-	0	NA	Intergenic	AluSp|SINE|Alu	-16766	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr12.132116820.+	chr12	132116820	132116821	+	0	NA	Intergenic	L1ME1|LINE|L1	-78812	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr14.23844993.-	chr14	23844993	23844994	-	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	1024	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr14.102109471.-	chr14	102109471	102109472	-	0	NA	Intergenic	AluY|SINE|Alu	-81783	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr20.46019520.+	chr20	46019520	46019521	+	0	NA	Intergenic	AluY|SINE|Alu	-34046	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr7.66480061.+	chr7	66480061	66480062	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18269	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr10.104210716.-	chr10	104210716	104210717	-	0	NA	"exon (NM_024886, exon 2 of 2)"	"exon (NM_024886, exon 2 of 2)"	-584	NM_024886	79946	Hs.225084	NM_024886	ENSG00000120055	C10orf95	-	chromosome 10 open reading frame 95	protein-coding
chr1.40378903.-	chr1	40378903	40378904	-	0	NA	Intergenic	SVA_D|Other|Other	11216	NM_001033082	4610	Hs.437922	NM_001033081	ENSG00000116990	MYCL1	LMYC|MYCL|bHLHe38	"v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)"	protein-coding
chr3.68753629.+	chr3	68753629	68753630	+	0	NA	Intergenic	AluSx3|SINE|Alu	228132	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr6.158438925.-	chr6	158438925	158438926	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-845	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr5.693690.-	chr5	693690	693691	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	180	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr15.83621291.+	chr15	83621291	83621292	+	0	NA	"5' UTR (NM_199330, exon 1 of 9)"	"5' UTR (NM_199330, exon 1 of 9)"	185	NM_004839	9455	Hs.578443	NM_004839	ENSG00000103942	HOMER2	ACPD|CPD|HOMER-2|VESL-2	homer homolog 2 (Drosophila)	protein-coding
chr9.129659355.-	chr9	129659355	129659356	-	0	NA	Intergenic	AluY|SINE|Alu	17698	NM_014636	9649	Hs.721343	NM_001190728	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
chr19.17758217.+	chr19	17758217	17758218	+	0	NA	"exon (NM_001080421, exon 16 of 42)"	"exon (NM_001080421, exon 16 of 42)"	40791	NM_001080421	23025	Hs.164502	NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A (C. elegans)	protein-coding
chr18.49731979.+	chr18	49731979	49731980	+	0	NA	Intergenic	AluY|SINE|Alu	-134563	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr10.43563318.+	chr10	43563318	43563319	+	0	NA	Intergenic	Intergenic	-9199	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr17.2311339.+	chr17	2311339	2311340	+	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	-7081	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr8.43274646.-	chr8	43274646	43274647	-	0	NA	Intergenic	SVA_D|Other|Other	-127061	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr10.135075420.-	chr10	135075420	135075421	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14296	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr10.134785454.+	chr10	134785454	134785455	+	0	NA	"non-coding (NR_046231, exon 2 of 3)"	"non-coding (NR_046231, exon 2 of 3)"	6416	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LOC399829	-	uncharacterized LOC399829	miscRNA
chr9.135048731.+	chr9	135048731	135048732	+	0	NA	"intron (NM_032536, intron 2 of 7)"	"intron (NM_032536, intron 2 of 7)"	11397	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr8.86574374.+	chr8	86574374	86574375	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	368	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr9.139071867.-	chr9	139071867	139071868	-	0	NA	Intergenic	Intergenic	-23137	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr2.48811036.+	chr2	48811036	48811037	+	0	NA	"intron (NM_172311, intron 2 of 10)"	AluSg|SINE|Alu	3310	NM_001198594	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr17.18785239.+	chr17	18785239	18785240	+	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	16457	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr22.38336405.-	chr22	38336405	38336406	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13249	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr17.18232055.+	chr17	18232055	18232056	+	0	NA	TTS (NM_144775)	TTS (NM_144775)	13461	NM_144775	140775	Hs.707728	NM_144775		SMCR8	-	"Smith-Magenis syndrome chromosome region, candidate 8"	protein-coding
chr8.98907193.+	chr8	98907193	98907194	+	0	NA	"intron (NM_002380, intron 2 of 18)"	AluSx1|SINE|Alu	25882	NM_002380	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
chr20.62126136.+	chr20	62126136	62126137	+	0	NA	"intron (NM_001958, intron 4 of 7)"	CpG	4532	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr10.125611158.+	chr10	125611158	125611159	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40342	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr1.212898480.-	chr1	212898480	212898481	-	0	NA	Intergenic	SVA_B|Other|Other	25153	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr11.41260600.+	chr11	41260600	41260601	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220586	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr3.49297109.+	chr3	49297109	49297110	+	0	NA	Intergenic	AluY|SINE|Alu	-14444	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	miscRNA
chr10.11970472.-	chr10	11970472	11970473	-	0	NA	"intron (NM_015542, intron 21 of 21)"	AluY|SINE|Alu	33763	NR_038222	219731	Hs.576787	NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	miscRNA
chr1.53335615.-	chr1	53335615	53335616	-	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	-27432	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr2.27588365.-	chr2	27588365	27588366	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4554	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr4.84864627.+	chr4	84864627	84864628	+	0	NA	Intergenic	SVA_D|Other|Other	407157	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr14.44126152.-	chr14	44126152	44126153	-	0	NA	Intergenic	AluSc|SINE|Alu	-850347	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr5.10354073.+	chr5	10354073	10354074	+	0	NA	"intron (NM_001270661, intron 1 of 22)"	CpG	322	NM_005885	10299	Hs.432862	NM_001270660		Mar-06	DOA10|MARCH-VI|RNF176|TEB4	"membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase"	protein-coding
chr8.67454339.-	chr8	67454339	67454340	-	0	NA	Intergenic	Intergenic	-48848	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr7.158671016.-	chr7	158671016	158671017	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21747	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr9.1433511.-	chr9	1433511	1433512	-	0	NA	Intergenic	AluSc|SINE|Alu	-382891	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr17.18179042.-	chr17	18179042	18179043	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14618	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr12.38493575.+	chr12	38493575	38493576	+	0	NA	Intergenic	Intergenic	-216982	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr6.126111983.-	chr6	126111983	126111984	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-74	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.198058506.+	chr2	198058506	198058507	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117015	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr19.36211767.-	chr19	36211767	36211768	-	0	NA	"exon (NM_014727, exon 3 of 37)"	"exon (NM_014727, exon 3 of 37)"	-2846	NM_014727	9757	Hs.676457	NM_014727	ENSG00000105663	MLL4	HRX2|KMT2B|MLL2|TRX2|WBP7	myeloid/lymphoid or mixed-lineage leukemia 4	protein-coding
chr9.138437762.-	chr9	138437762	138437763	-	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	223	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr8.52263054.-	chr8	52263054	52263055	-	0	NA	"intron (NM_144651, intron 19 of 22)"	AluSq2|SINE|Alu	-458951	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr5.1137789.+	chr5	1137789	1137790	+	0	NA	Intergenic	Intergenic	-25617	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr14.50379327.-	chr14	50379327	50379328	-	0	NA	Intergenic	AluYk4|SINE|Alu	-19591	NM_001663	382	Hs.719973	NM_001663		ARF6	-	ADP-ribosylation factor 6	protein-coding
chr21.45566078.+	chr21	45566078	45566079	+	0	NA	TTS (NM_198155)	TTS (NM_198155)	12584	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chrX.191426.-	chrX	191426	191427	-	0	NA	Intergenic	Intergenic	1565	NR_028057	55344	Hs.522568	NM_018390	ENSG00000182378	PLCXD1	-	"phosphatidylinositol-specific phospholipase C, X domain containing 1"	protein-coding
chr11.71702977.+	chr11	71702977	71702978	+	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	-6981	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr14.54988004.+	chr14	54988004	54988005	+	0	NA	"intron (NM_006568, intron 1 of 5)"	AluSq2|SINE|Alu	11417	NM_006568	10668	Hs.59106	NM_006568	ENSG00000100532	CGRRF1	CGR19|RNF197	cell growth regulator with ring finger domain 1	protein-coding
chr7.3828927.-	chr7	3828927	3828928	-	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	340390	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr1.226350682.-	chr1	226350682	226350683	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23741	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr19.45660349.+	chr19	45660349	45660350	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3059	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr18.10796179.+	chr18	10796179	10796180	+	0	NA	"intron (NM_022068, intron 12 of 51)"	AluY|SINE|Alu	270306	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr8.27695266.+	chr8	27695266	27695267	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	83	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr19.42760784.-	chr19	42760784	42760785	-	0	NA	Intergenic	MIRb|SINE|MIR	1475	NM_006494	2077	Hs.655969	NM_006494	ENSG00000105722	ERF	PE-2|PE2	Ets2 repressor factor	protein-coding
chr9.92166187.+	chr9	92166187	92166188	+	0	NA	Intergenic	AluY|SINE|Alu	-53740	NM_006705	10912	Hs.9701	NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	"growth arrest and DNA-damage-inducible, gamma"	protein-coding
chr18.69660699.+	chr18	69660699	69660700	+	0	NA	Intergenic	AluY|SINE|Alu	-414507	NR_038326	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr12.75694239.-	chr12	75694239	75694240	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29597	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr12.118079888.-	chr12	118079888	118079889	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280281	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr10.120946060.-	chr10	120946060	120946061	-	0	NA	Intergenic	Intergenic	7715	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr9.72433089.+	chr9	72433089	72433090	+	0	NA	Intergenic	AluY|SINE|Alu	2566	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr19.23391316.-	chr19	23391316	23391317	-	0	NA	Intergenic	AluYb8|SINE|Alu	-41856	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr6.89378023.-	chr6	89378023	89378024	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295325	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chrX.70493499.-	chrX	70493499	70493500	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9543	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr20.60624016.+	chr20	60624016	60624017	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16850	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr19.58250077.+	chr19	58250077	58250078	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8087	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr2.202898594.-	chr2	202898594	202898595	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	716	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr9.123743132.+	chr9	123743132	123743133	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51681	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr2.905916.+	chr2	905916	905917	+	0	NA	Intergenic	Intergenic	-40638	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr19.23474454.-	chr19	23474454	23474455	-	0	NA	Intergenic	Intergenic	41282	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr12.66768121.+	chr12	66768121	66768122	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71786	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr9.133788019.+	chr9	133788019	133788020	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18794	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr16.33293894.-	chr16	33293894	33293895	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4808	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr15.85248939.-	chr15	85248939	85248940	-	0	NA	"intron (NR_073518, intron 1 of 6)"	AluSx|SINE|Alu	-10752	NM_001271918	23478	Hs.9534	NM_001271918	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A (S. cerevisiae)	protein-coding
chr4.58090204.-	chr4	58090204	58090205	-	0	NA	Intergenic	SVA_D|Other|Other	113653	NM_001253835	3490	Hs.691061	NM_001253835	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
chr7.150812716.+	chr7	150812716	150812717	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28890	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr5.3324761.-	chr5	3324761	3324762	-	0	NA	Intergenic	CpG	-211447	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr2.90482981.+	chr2	90482981	90482982	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1364994	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr7.1798937.+	chr7	1798937	1798938	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50139	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr7.130728487.+	chr7	130728487	130728488	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63302	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr11.7603252.-	chr11	7603252	7603253	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15165	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr13.50177133.-	chr13	50177133	50177134	-	0	NA	Intergenic	AluY|SINE|Alu	17414	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chrX.129231007.+	chrX	129231007	129231008	+	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	13468	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr9.129229279.-	chr9	129229279	129229280	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56496	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr2.192374871.-	chr2	192374871	192374872	-	0	NA	Intergenic	AluY|SINE|Alu	167927	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr15.90327997.+	chr15	90327997	90327998	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8408	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr2.230579968.+	chr2	230579968	230579969	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-682	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chrX.689429.-	chrX	689429	689430	-	0	NA	Intergenic	Intergenic	-104350	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr16.632114.+	chr16	632114	632115	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7243	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr9.113404477.+	chr9	113404477	113404478	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26574	NM_001166281	4593	Hs.521653	NM_001166280	ENSG00000030304	MUSK	-	"muscle, skeletal, receptor tyrosine kinase"	protein-coding
chr9.38705452.-	chr9	38705452	38705453	-	0	NA	Intergenic	AluY|SINE|Alu	-84367	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr1.937252.+	chr1	937252	937253	+	0	NA	Intergenic	CpG-24	-1700	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr20.62204092.-	chr20	62204092	62204093	-	0	NA	"5' UTR (NM_001037335, exon 2 of 20)"	"5' UTR (NM_001037335, exon 2 of 20)"	-1500	NM_001037335	85441	Hs.517180	NM_001037335	ENSG00000130589	HELZ2	PDIP-1|PRIC285	"helicase with zinc finger 2, transcriptional coactivator"	protein-coding
chr6.142795200.-	chr6	142795200	142795201	-	0	NA	Intergenic	AluSc|SINE|Alu	-163773	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr2.110631832.+	chr2	110631832	110631833	+	0	NA	Intergenic	AluY|SINE|Alu	-24177	NR_027467	96626	Hs.535619	NM_033514	ENSG00000256977	LIMS3	PINCH-3	LIM and senescent cell antigen-like domains 3	protein-coding
chr18.59992434.-	chr18	59992434	59992435	-	0	NA	promoter-TSS (NM_003839)	promoter-TSS (NM_003839)	86	NM_001270951	8792	Hs.621477	NM_001270949	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER	"tumor necrosis factor receptor superfamily, member 11a, NFKB activator"	protein-coding
chr17.57258027.+	chr17	57258027	57258028	+	0	NA	"intron (NM_018304, intron 2 of 9)"	AluSx|SINE|Alu	25167	NM_018304	55771	Hs.631750	NM_018304		PRR11	-	proline rich 11	protein-coding
chr4.166248542.+	chr4	166248542	166248543	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-276	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr3.22843186.+	chr3	22843186	22843187	+	0	NA	Intergenic	L1PA2|LINE|L1	-401598	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr12.2858369.-	chr12	2858369	2858370	-	0	NA	Intergenic	L1P3|LINE|L1	-22466	NR_033958	283440	Hs.658536	NR_033958	ENSG00000255669	LOC283440	-	uncharacterized LOC283440	miscRNA
chr2.129439026.-	chr2	129439026	129439027	-	0	NA	Intergenic	LTR10C|LTR|ERV1	362855	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr7.73149765.-	chr7	73149765	73149766	-	0	NA	TTS (NR_026910)	TTS (NR_026910)	-366	NR_026690	171022	Hs.650513	NR_026690	ENSG00000225969	LINC00035	ABHD11-AS1|NCRNA00035|WBSCR26	long intergenic non-protein coding RNA 35	miscRNA
chr2.48079394.+	chr2	48079394	48079395	+	0	NA	"intron (NM_001190274, intron 1 of 22)"	AluSx1|SINE|Alu	36464	NM_025133	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chr18.68794276.+	chr18	68794276	68794277	+	0	NA	Intergenic	AluSx1|SINE|Alu	451916	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr12.49163963.+	chr12	49163963	49163964	+	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	1857	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr20.62282065.+	chr20	62282065	62282066	+	0	NA	"intron (NM_015894, intron 1 of 4)"	"intron (NM_015894, intron 1 of 4)"	2054	NM_001276310	50861	Hs.639609	NM_001276310	ENSG00000197457	STMN3	SCLIP	stathmin-like 3	protein-coding
chr7.80622738.+	chr7	80622738	80622739	+	0	NA	Intergenic	AluY|SINE|Alu	-74071	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C"	protein-coding
chr7.5339977.-	chr7	5339977	5339978	-	0	NA	"intron (NM_001040661, intron 9 of 10)"	"intron (NM_001040661, intron 9 of 10)"	-17416	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr17.74707069.-	chr17	74707069	74707070	-	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	13	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr7.158671014.+	chr7	158671014	158671015	+	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	21745	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr11.68303179.-	chr11	68303179	68303180	-	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	-74993	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr19.18416263.-	chr19	18416263	18416264	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17738	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr6.88932910.+	chr6	88932910	88932911	+	0	NA	Intergenic	AluY|SINE|Alu	-57143	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chrX.53125740.+	chrX	53125740	53125741	+	0	NA	Intergenic	AluJb|SINE|Alu	14198	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.133294165.+	chr9	133294165	133294166	+	0	NA	Intergenic	Intergenic	-25929	NM_054012	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
chr6.144507774.+	chr6	144507774	144507775	+	0	NA	"exon (NM_003764, exon 2 of 2)"	"exon (NM_003764, exon 2 of 2)"	36120	NM_003764	8676	Hs.118958	NM_003764		STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
chr16.58034858.+	chr16	58034858	58034859	+	0	NA	promoter-TSS (NM_001204911)	promoter-TSS (NM_001204911)	-419	NM_001204911	79650	Hs.408702	NM_001195302	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hUsb1	U6 snRNA biogenesis 1	protein-coding
chr22.38166121.+	chr22	38166121	38166122	+	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	23880	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr16.3030373.-	chr16	3030373	3030374	-	0	NA	"5' UTR (NM_004203, exon 1 of 9)"	"5' UTR (NM_004203, exon 1 of 9)"	-167	NM_004203	9088	Hs.732385	NM_001258450	ENSG00000127564	PKMYT1	MYT1	"protein kinase, membrane associated tyrosine/threonine 1"	protein-coding
chr19.18075299.-	chr19	18075299	18075300	-	0	NA	"intron (NM_002248, intron 2 of 10)"	"intron (NM_002248, intron 2 of 10)"	-13188	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr5.1858764.-	chr5	1858764	1858765	-	0	NA	Intergenic	Intergenic	-24116	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr9.66486341.+	chr9	66486341	66486342	+	0	NA	Intergenic	Intergenic	-7928	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr14.51521357.-	chr14	51521357	51521358	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41065	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr5.114712428.+	chr5	114712428	114712429	+	0	NA	Intergenic	AluYc3|SINE|Alu	-79970	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr4.190662170.+	chr4	190662170	190662171	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199804	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr13.21363691.+	chr13	21363691	21363692	+	0	NA	"intron (NM_022459, intron 19 of 22)"	AluY|SINE|Alu	-15634	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
chr17.78559360.-	chr17	78559360	78559361	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40735	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr17.8061023.+	chr17	8061023	8061024	+	0	NA	Intergenic	AluY|SINE|Alu	-5270	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr1.25736535.+	chr1	25736535	25736536	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10828	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr17.4926583.+	chr17	4926583	4926584	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12144	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr12.79439098.-	chr12	79439098	79439099	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	335	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr19.2840939.+	chr19	2840939	2840940	+	0	NA	promoter-TSS (NM_152791)	promoter-TSS (NM_152791)	-494	NM_152791	148254	Hs.47712	NM_001172775	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
chr11.72160515.-	chr11	72160515	72160516	-	0	NA	Intergenic	AluY|SINE|Alu	14791	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr17.57645271.-	chr17	57645271	57645272	-	0	NA	"intron (NM_024612, intron 2 of 17)"	AluY|SINE|Alu	-2385	NM_024612	79665	Hs.29403	XM_003846599	ENSG00000108406	DHX40	DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding
chr11.48446914.+	chr11	48446914	48446915	+	0	NA	Intergenic	AluYc|SINE|Alu	-63431	NM_001005512	403253	Hs.554532	NM_001005512	ENSG00000237388	OR4A47	OR11-113	"olfactory receptor, family 4, subfamily A, member 47"	protein-coding
chr5.178884995.+	chr5	178884995	178884996	+	0	NA	Intergenic	AluY|SINE|Alu	-92567	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chrX.106914054.+	chrX	106914054	106914055	+	0	NA	Intergenic	AluSz|SINE|Alu	42400	NM_002764	5631	Hs.56	NM_001204402	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
chr9.8858143.-	chr9	8858143	8858144	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124197	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.157129489.+	chr7	157129489	157129490	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-221	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr2.52338167.-	chr2	52338167	52338168	-	0	NA	Intergenic	AluY|SINE|Alu	1078493	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr9.113026203.+	chr9	113026203	113026204	+	0	NA	Intergenic	AluSx3|SINE|Alu	-7283	NM_001244938	7295	Hs.435136	NM_001244938	ENSG00000136810	TXN	TRDX|TRX|TRX1	thioredoxin	protein-coding
chr1.27876459.-	chr1	27876459	27876460	-	0	NA	"exon (NM_001029882, exon 6 of 7)"	"exon (NM_001029882, exon 6 of 7)"	-53684	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	CL23945|DJ159A19.3|RP1-159A19.1	"AT hook, DNA binding motif, containing 1"	protein-coding
chr19.34248214.-	chr19	34248214	34248215	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39537	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr7.91257061.-	chr7	91257061	91257062	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252955	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr6.33519031.-	chr6	33519031	33519032	-	0	NA	Intergenic	AluSg|SINE|Alu	-29039	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr17.30132501.+	chr17	30132501	30132502	+	0	NA	Intergenic	AluY|SINE|Alu	53825	NM_018405	55352	Hs.462729	NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	"coordinator of PRMT5, differentiation stimulator"	protein-coding
chr20.33283585.-	chr20	33283585	33283586	-	0	NA	Intergenic	AluY|SINE|Alu	8563	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr2.240371687.+	chr2	240371687	240371688	+	0	NA	Intergenic	SVA_D|Other|Other	-49044	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr22.32012814.-	chr22	32012814	32012815	-	0	NA	"exon (NM_001258325, exon 28 of 31)"	"exon (NM_001258325, exon 28 of 31)"	-13996	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
chr2.173941021.-	chr2	173941021	173941022	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-456	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chrX.7055269.+	chrX	7055269	7055270	+	0	NA	"intron (NM_001135565, intron 1 of 4)"	AluSq2|SINE|Alu	-10632	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr8.22864983.-	chr8	22864983	22864984	-	0	NA	"exon (NM_001160036, exon 7 of 12)"	"exon (NM_001160036, exon 7 of 12)"	-7891	NM_015178	23221	Hs.372688	NM_001160036	ENSG00000008853	RHOBTB2	DBC2	Rho-related BTB domain containing 2	protein-coding
chr2.172777070.+	chr2	172777070	172777071	+	0	NA	Intergenic	AluY|SINE|Alu	-1865	NM_003642	8520	Hs.632532	NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
chr3.188708052.+	chr3	188708052	188708053	+	0	NA	Intergenic	Intergenic	-181711	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr17.79995474.-	chr17	79995474	79995475	-	0	NA	promoter-TSS (NM_016286)	promoter-TSS (NM_016286)	-99	NM_016286	51181	Hs.9857	NM_001195218	ENSG00000169738	DCXR	DCR|HCR2|HCRII|KIDCR|P34H|SDR20C1|XR	dicarbonyl/L-xylulose reductase	protein-coding
chr9.85673190.+	chr9	85673190	85673191	+	0	NA	"intron (NM_152573, intron 1 of 16)"	AluY|SINE|Alu	4853	NM_152573	158158	Hs.129136	NM_152573		RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
chr17.59564766.-	chr17	59564766	59564767	-	0	NA	Intergenic	Intergenic	-30959	NM_018488	9496	Hs.143907	NM_018488	ENSG00000121075	TBX4	SPS	T-box 4	protein-coding
chr12.1605397.+	chr12	1605397	1605398	+	0	NA	TTS (NR_027946)	TTS (NR_027946)	-4260	NR_028415	100292680	Hs.391695	NR_028415		LOC100292680	-	uncharacterized LOC100292680	miscRNA
chr11.62438132.-	chr11	62438132	62438133	-	0	NA	promoter-TSS (NM_001085372)	promoter-TSS (NM_001085372)	994	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chrX.144902976.+	chrX	144902976	144902977	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	110	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr6.74427455.+	chr6	74427455	74427456	+	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	21941	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr14.102101596.+	chr14	102101596	102101597	+	0	NA	Intergenic	CpG	73908	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr18.9051722.-	chr18	9051722	9051723	-	0	NA	Intergenic	AluY|SINE|Alu	50906	NM_021074	4729	Hs.464572	NM_021074	ENSG00000178127	NDUFV2	CI-24k	"NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa"	protein-coding
chr12.133158732.-	chr12	133158732	133158733	-	0	NA	"exon (NM_001142641, exon 16 of 17)"	"exon (NM_001142641, exon 16 of 17)"	-28305	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr19.41641941.+	chr19	41641941	41641942	+	0	NA	Intergenic	CpG	21588	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr3.46792407.-	chr3	46792407	46792408	-	0	NA	Intergenic	CpG	6162	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr19.2995061.+	chr19	2995061	2995062	+	0	NA	"3' UTR (NM_001143986, exon 17 of 17)"	"3' UTR (NM_001143986, exon 17 of 17)"	17525	NM_001143986	79816	Hs.334507	NM_001143986	ENSG00000104953	TLE6	GRG6	"transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)"	protein-coding
chr2.38191073.+	chr2	38191073	38191074	+	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	13477	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr17.744666.+	chr17	744666	744667	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22685	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr19.18180389.-	chr19	18180389	18180390	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17308	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr6.33500258.+	chr6	33500258	33500259	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47812	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr15.63229220.-	chr15	63229220	63229221	-	0	NA	Intergenic	AluSp|SINE|Alu	105618	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr12.76859082.-	chr12	76859082	76859083	-	0	NA	"intron (NM_020841, intron 2 of 23)"	AluY|SINE|Alu	-94507	NM_020841	114882	Hs.430849	NM_001003712	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein-like 8	protein-coding
chr1.54839926.-	chr1	54839926	54839927	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32053	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr17.35266215.-	chr17	35266215	35266216	-	0	NA	Intergenic	AluSx3|SINE|Alu	28557	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr8.143373437.+	chr8	143373437	143373438	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93720	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chrY.9930622.+	chrY	9930622	9930623	+	0	NA	Intergenic	CpG	182215	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr1.6471025.+	chr1	6471025	6471026	+	0	NA	Intergenic	AluSz|SINE|Alu	8954	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr9.131496171.-	chr9	131496171	131496172	-	0	NA	TTS (NR_046240)	TTS (NR_046240)	-9430	NR_046240	100506100	Hs.62946	NR_046240	ENSG00000223478	LOC100506100	-	uncharacterized LOC100506100	miscRNA
chr13.47509452.+	chr13	47509452	47509453	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-38241	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr16.723819.-	chr16	723819	723820	-	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	2256	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr21.45684280.+	chr21	45684280	45684281	+	0	NA	Intergenic	AluY|SINE|Alu	-2181	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr17.7246116.-	chr17	7246116	7246117	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6268	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chrX.20694411.+	chrX	20694411	20694412	+	0	NA	Intergenic	AluY|SINE|Alu	-409661	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr1.179713036.-	chr1	179713036	179713037	-	0	NA	"intron (NM_173509, intron 1 of 4)"	CpG	-738	NM_173509	148753	Hs.729631	NM_173509	ENSG00000143340	FAM163A	C1orf76|NDSP|RP11-12M5.2	"family with sequence similarity 163, member A"	protein-coding
chr14.100705628.-	chr14	100705628	100705629	-	0	NA	"exon (NM_003403, exon 1 of 5)"	"exon (NM_003403, exon 1 of 5)"	-526	NM_003403	7528	Hs.603118	NM_003403		YY1	DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
chr16.58288622.+	chr16	58288622	58288623	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4782	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr17.7183170.-	chr17	7183170	7183171	-	0	NA	Intergenic	AluSx|SINE|Alu	1884	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr8.14882345.+	chr8	14882345	14882346	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171326	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chrX.53808254.+	chrX	53808254	53808255	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94557	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr16.12163710.+	chr16	12163710	12163711	+	0	NA	"intron (NM_032167, intron 10 of 20)"	AluYc|SINE|Alu	93108	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr11.5315862.-	chr11	5315862	5315863	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7314	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr17.4488397.+	chr17	4488397	4488398	+	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	563	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr12.131551490.-	chr12	131551490	131551491	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98066	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr3.186441577.-	chr3	186441577	186441578	-	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	-6479	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr19.18180459.+	chr19	18180459	18180460	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17238	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr14.37124371.+	chr14	37124371	37124372	+	0	NA	Intergenic	Intergenic	-2402	NM_006194	5083	Hs.609574	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
chr15.68871020.-	chr15	68871020	68871021	-	0	NA	promoter-TSS (NM_006091)	promoter-TSS (NM_006091)	288	NM_006091	10391	Hs.551213	NM_001190456	ENSG00000103647	CORO2B	CLIPINC	"coronin, actin binding protein, 2B"	protein-coding
chr18.57516965.-	chr18	57516965	57516966	-	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	50227	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
chr9.34070290.+	chr9	34070290	34070291	+	0	NA	Intergenic	AluSz|SINE|Alu	-21343	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr19.11463922.+	chr19	11463922	11463923	+	0	NA	"intron (NM_001080503, intron 7 of 10)"	AluSc8|SINE|Alu	-2140	NM_001170635	64748	Hs.6846	NM_001170635	ENSG00000105520	LPPR2	PRG4	lipid phosphate phosphatase-related protein type 2	protein-coding
chr10.104238491.+	chr10	104238491	104238492	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17321	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr12.53235086.+	chr12	53235086	53235087	+	0	NA	"intron (NM_173352, intron 6 of 8)"	AluSc8|SINE|Alu	-7009	NM_175834	338785	Hs.711471	NM_175834	ENSG00000185640	KRT79	K6L|KRT6L	keratin 79	protein-coding
chr2.239960688.-	chr2	239960688	239960689	-	0	NA	Intergenic	Intergenic	-29922	NR_039642	100616397		NR_039642		MIR4440	-	microRNA 4440	miscRNA
chrX.98999288.+	chrX	98999288	98999289	+	0	NA	"intron (NR_024608, intron 4 of 10)"	AluSp|SINE|Alu	195553	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr15.73344625.+	chr15	73344625	73344626	+	0	NA	promoter-TSS (NM_001172624)	promoter-TSS (NM_001172624)	-200	NM_002499	4756	Hs.388613	NM_001172623	ENSG00000067141	NEO1	IGDCC2|NGN	neogenin 1	protein-coding
chr11.44361810.-	chr11	44361810	44361811	-	0	NA	Intergenic	AluJb|SINE|Alu	30094	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr1.45937944.-	chr1	45937944	45937945	-	0	NA	"intron (NM_007170, intron 1 of 10)"	"intron (NM_007170, intron 1 of 10)"	-18896	NM_007170	10420	Hs.591499	NM_007170	ENSG00000070759	TESK2	-	testis-specific kinase 2	protein-coding
chr4.2878519.-	chr4	2878519	2878520	-	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	-32935	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr1.197418641.+	chr1	197418641	197418642	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181307	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr2.211170517.+	chr2	211170517	211170518	+	0	NA	"intron (NM_079420, intron 1 of 6)"	AluSp|SINE|Alu	-2178	NM_079422	4632	Hs.187338	NM_079420	ENSG00000168530	MYL1	MLC1F|MLC3F	"myosin, light chain 1, alkali; skeletal, fast"	protein-coding
chr7.73470106.+	chr7	73470106	73470107	+	0	NA	"intron (NM_001081753, intron 19 of 30)"	AluSz6|SINE|Alu	27679	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr19.58125555.-	chr19	58125555	58125556	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	275	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr7.6388355.+	chr7	6388355	6388356	+	0	NA	"5' UTR (NM_001037163, exon 1 of 2)"	"5' UTR (NM_001037163, exon 1 of 2)"	235	NM_001037163	84792	Hs.696146	NM_001037163	ENSG00000178397	FAM220A	C7orf70|SIPAR	"family with sequence similarity 220, member A"	protein-coding
chr3.158450084.+	chr3	158450084	158450085	+	0	NA	"exon (NM_206963, exon 1 of 6)"	"exon (NM_206963, exon 1 of 6)"	191	NM_002888	5918	Hs.131269	NM_002888	ENSG00000118849	RARRES1	TIG1	retinoic acid receptor responder (tazarotene induced) 1	protein-coding
chr2.61619583.+	chr2	61619583	61619584	+	0	NA	"intron (NM_014709, intron 5 of 79)"	AluSx|SINE|Alu	24929	NR_003707	100124537	Hs.675825	NR_003707		SNORA70B	-	"small nucleolar RNA, H/ACA box 70B"	snoRNA
chr20.48080585.-	chr20	48080585	48080586	-	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	-18596	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr21.45684306.-	chr21	45684306	45684307	-	0	NA	Intergenic	AluY|SINE|Alu	2207	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr7.69745566.+	chr7	69745566	69745567	+	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	681660	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr18.2377842.-	chr18	2377842	2377843	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193647	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr1.243422526.+	chr1	243422526	243422527	+	0	NA	"intron (NM_006642, intron 1 of 17)"	AluY|SINE|Alu	3219	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
chr11.107701201.+	chr11	107701201	107701202	+	0	NA	"intron (NM_017515, intron 1 of 7)"	AluY|SINE|Alu	28713	NM_017515	54733	Hs.524014	NM_017515	ENSG00000110660	SLC35F2	HSNOV1	"solute carrier family 35, member F2"	protein-coding
chr6.99820587.+	chr6	99820587	99820588	+	0	NA	"intron (NM_017421, intron 5 of 6)"	AluSg4|SINE|Alu	21495	NM_017421	51805	Hs.713623	NM_017421	ENSG00000132423	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	"coenzyme Q3 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr19.267151.-	chr19	267151	267152	-	0	NA	Intergenic	CpG	-24018	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr7.139162649.+	chr7	139162649	139162650	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5808	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr5.176559011.+	chr5	176559011	176559012	+	0	NA	Intergenic	CpG	-1069	NM_172349	64324	Hs.106861	NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
chr2.242143602.+	chr2	242143602	242143603	+	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	15678	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr5.133831533.-	chr5	133831533	133831534	-	0	NA	Intergenic	AluY|SINE|Alu	30265	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr1.156259137.+	chr1	156259137	156259138	+	0	NA	"intron (NM_032323, intron 3 of 3)"	AluY|SINE|Alu	5067	NM_032323	84283	Hs.347408	NM_032323	ENSG00000163472	TMEM79	-	transmembrane protein 79	protein-coding
chr2.241780295.+	chr2	241780295	241780296	+	0	NA	Intergenic	Intergenic	-20570	NM_001244008	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr3.102973882.-	chr3	102973882	102973883	-	0	NA	Intergenic	SVA_D|Other|Other	-820023	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr5.2007693.-	chr5	2007693	2007694	-	0	NA	Intergenic	CpG	124813	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr12.49857051.-	chr12	49857051	49857052	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-74094	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr5.39649170.-	chr5	39649170	39649171	-	0	NA	Intergenic	AluSx3|SINE|Alu	223835	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr2.20424082.+	chr2	20424082	20424083	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	845	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chrX.39680412.+	chrX	39680412	39680413	+	0	NA	Intergenic	CpG	276307	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr20.43040161.-	chr20	43040161	43040162	-	0	NA	"intron (NM_178850, intron 3 of 7)"	"intron (NM_178850, intron 3 of 7)"	-3401	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	miscRNA
chr9.87285555.+	chr9	87285555	87285556	+	0	NA	"5' UTR (NM_006180, exon 4 of 21)"	"5' UTR (NM_006180, exon 4 of 21)"	929	NM_001007097	4915	Hs.712776	NM_001007097	ENSG00000148053	NTRK2	GP145-TrkB|TRKB|trk-B	"neurotrophic tyrosine kinase, receptor, type 2"	protein-coding
chr19.3644501.+	chr19	3644501	3644502	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17688	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr9.28773105.+	chr9	28773105	28773106	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53802	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr6.114067452.+	chr6	114067452	114067453	+	0	NA	Intergenic	AluY|SINE|Alu	-111075	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr7.61969451.-	chr7	61969451	61969452	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-794983	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr14.80915464.-	chr14	80915464	80915465	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218067	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr6.24721000.+	chr6	24721000	24721001	+	0	NA	Intergenic	CpG	-1597	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr6.168219480.-	chr6	168219480	168219481	-	0	NA	Intergenic	AluSp|SINE|Alu	-7996	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr2.223289080.-	chr2	223289080	223289081	-	0	NA	promoter-TSS (NM_152386)	promoter-TSS (NM_152386)	242	NM_152386	130367	Hs.591604	NM_152386		SGPP2	SPP2	sphingosine-1-phosphate phosphatase 2	protein-coding
chr19.13106870.-	chr19	13106870	13106871	-	0	NA	"intron (NM_002501, intron 1 of 9)"	CpG	-286	NM_002501	4784	Hs.257970	NM_001271043	ENSG00000008441	NFIX	MRSHSS|NF1A|SOTOS2	nuclear factor I/X (CCAAT-binding transcription factor)	protein-coding
chr16.12210394.-	chr16	12210394	12210395	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139792	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr11.7603336.-	chr11	7603336	7603337	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15081	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr2.133015885.+	chr2	133015885	133015886	+	0	NA	promoter-TSS (NR_027020)	promoter-TSS (NR_027020)	-343	NR_027020	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B-like	pseudo
chr2.905807.-	chr2	905807	905808	-	0	NA	Intergenic	Intergenic	40747	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr1.161494333.+	chr1	161494333	161494334	+	0	NA	"5' UTR (NM_002155, exon 1 of 1)"	"5' UTR (NM_002155, exon 1 of 1)"	297	NM_002155	3310	Hs.654614	NM_002155	ENSG00000173110	HSPA6	-	heat shock 70kDa protein 6 (HSP70B')	protein-coding
chr2.38825036.+	chr2	38825036	38825037	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5142	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chrX.118871992.+	chrX	118871992	118871993	+	0	NA	Intergenic	AluYc|SINE|Alu	-20584	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr15.65484925.-	chr15	65484925	65484926	-	0	NA	Intergenic	AluSc8|SINE|Alu	7362	NM_006660	10845	Hs.113823	NM_006660		CLPX	-	ClpX caseinolytic peptidase X homolog (E. coli)	protein-coding
chr9.35846372.+	chr9	35846372	35846373	+	0	NA	"exon (NM_001042590, exon 8 of 13)"	"exon (NM_001042590, exon 8 of 13)"	-13899	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr3.196325429.+	chr3	196325429	196325430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29704	NM_001105573	200933	Hs.169815	NM_001105573	ENSG00000174013	FBXO45	Fbx45	F-box protein 45	protein-coding
chr20.56274950.-	chr20	56274950	56274951	-	0	NA	"intron (NM_199171, intron 1 of 3)"	"intron (NM_199171, intron 1 of 3)"	9270	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	"prostate transmembrane protein, androgen induced 1"	protein-coding
chr10.4887132.-	chr10	4887132	4887133	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18763	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr1.69778189.-	chr1	69778189	69778190	-	0	NA	Intergenic	L1PA8A|LINE|L1	447669	NM_020794	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
chr20.20749451.+	chr20	20749451	20749452	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-56185	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr3.36421967.-	chr3	36421967	36421968	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	130	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr12.58059378.-	chr12	58059378	58059379	-	0	NA	Intergenic	SVA_A|Other|Other	28360	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr6.14976610.-	chr6	14976610	14976611	-	0	NA	Intergenic	LTR2|LTR|ERV1	269596	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr8.11030667.+	chr8	11030667	11030668	+	0	NA	"intron (NM_173683, intron 1 of 2)"	AluY|SINE|Alu	28208	NM_173683	286046	Hs.666146	NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	"XK, Kell blood group complex subunit-related family, member 6"	protein-coding
chr2.132978688.+	chr2	132978688	132978689	+	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	35965	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr1.228561779.+	chr1	228561779	228561780	+	0	NA	"intron (NM_001271223, intron 106 of 115)"	"intron (NM_001271223, intron 106 of 115)"	32738	NM_145214	81559	Hs.13543	NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
chr6.24720939.-	chr6	24720939	24720940	-	0	NA	Intergenic	CpG	1536	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr17.10492708.+	chr17	10492708	10492709	+	0	NA	Intergenic	AluSc8|SINE|Alu	-39691	NM_017534	4620	Hs.667534	NM_001100112	ENSG00000125414	MYH2	MYH2A|MYHSA2|MYHas8|MyHC-2A|MyHC-IIa	"myosin, heavy chain 2, skeletal muscle, adult"	protein-coding
chr4.1541951.-	chr4	1541951	1541952	-	0	NA	Intergenic	Intergenic	-143767	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr6.39798321.-	chr6	39798321	39798322	-	0	NA	"intron (NM_015345, intron 1 of 24)"	"intron (NM_015345, intron 1 of 24)"	-37548	NM_015345	23500	Hs.357128	NM_001201427	ENSG00000146122	DAAM2	dJ90A20A.1	dishevelled associated activator of morphogenesis 2	protein-coding
chr11.100596532.-	chr11	100596532	100596533	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38125	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr9.108210387.-	chr9	108210387	108210388	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-62	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr19.38755128.+	chr19	38755128	38755129	+	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	30	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr13.113009036.+	chr13	113009036	113009037	+	0	NA	Intergenic	Intergenic	-21615	NM_145248	122258	Hs.97592	NM_145248	ENSG00000153498	SPACA7	C13orf28	sperm acrosome associated 7	protein-coding
chr1.209280857.+	chr1	209280857	209280858	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-321311	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
chr7.132124030.-	chr7	132124030	132124031	-	0	NA	"intron (NM_001105543, intron 3 of 3)"	"intron (NM_001105543, intron 3 of 3)"	-137293	NM_020911	91584	Hs.511454	NM_001105543	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
chr11.638958.+	chr11	638958	638959	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1653	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr19.23457707.+	chr19	23457707	23457708	+	0	NA	Intergenic	AluY|SINE|Alu	-24535	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr4.186162029.-	chr4	186162029	186162030	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30745	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr6.89454127.+	chr6	89454127	89454128	+	0	NA	"intron (NM_003800, intron 13 of 15)"	AluSc|SINE|Alu	219221	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr6.13335753.+	chr6	13335753	13335754	+	0	NA	Intergenic	AluYa5|SINE|Alu	-6966	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr9.6858646.+	chr9	6858646	6858647	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101005	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr9.128170614.-	chr9	128170614	128170615	-	0	NA	Intergenic	CpG	-146503	NM_015635	26130	Hs.495134	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
chr6.168352156.+	chr6	168352156	168352157	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25463	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr8.23379466.+	chr8	23379466	23379467	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6897	NM_016612	51312	Hs.726050	NM_016612		SLC25A37	MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	"solute carrier family 25 (mitochondrial iron transporter), member 37"	protein-coding
chr4.2878501.-	chr4	2878501	2878502	-	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	-32917	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr6.57322576.+	chr6	57322576	57322577	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140154	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr1.2157682.-	chr1	2157682	2157683	-	0	NA	Intergenic	AluJb|SINE|Alu	2452	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr19.10041284.+	chr19	10041284	10041285	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5786	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr14.101044114.-	chr14	101044114	101044115	-	0	NA	Intergenic	Intergenic	7983	NM_020836	57596	Hs.211751	NM_001159531	ENSG00000183092	BEGAIN	-	brain-enriched guanylate kinase-associated	protein-coding
chr9.27283869.+	chr9	27283869	27283870	+	0	NA	TTS (NM_001161585)	TTS (NM_001161585)	-1078	NR_026679	158035	Hs.201554	NR_026679	ENSG00000231459	LINC00032	C9orf14|NCRNA00032	long intergenic non-protein coding RNA 32	miscRNA
chr16.88772897.-	chr16	88772897	88772898	-	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	-6	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr2.126700654.-	chr2	126700654	126700655	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712857	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr16.70207330.+	chr16	70207330	70207331	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-598	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr14.97183982.-	chr14	97183982	97183983	-	0	NA	Intergenic	AluY|SINE|Alu	79702	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr7.73149764.-	chr7	73149764	73149765	-	0	NA	TTS (NR_026910)	TTS (NR_026910)	-365	NR_026690	171022	Hs.650513	NR_026690	ENSG00000225969	LINC00035	ABHD11-AS1|NCRNA00035|WBSCR26	long intergenic non-protein coding RNA 35	miscRNA
chr6.88118006.-	chr6	88118006	88118007	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-316	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr16.48516954.-	chr16	48516954	48516955	-	0	NA	Intergenic	SVA_B|Other|Other	97725	NM_003031	6477	Hs.706828	NM_001006610	ENSG00000196470	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
chr9.105850365.-	chr9	105850365	105850366	-	0	NA	Intergenic	AluYc|SINE|Alu	-92772	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr16.49577410.+	chr16	49577410	49577411	+	0	NA	"intron (NM_001271620, intron 5 of 7)"	"intron (NM_001271620, intron 5 of 7)"	169602	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr5.95998306.+	chr5	95998306	95998307	+	0	NA	"intron (NM_001042440, intron 1 of 29)"	CpG	399	NM_001042440	831	Hs.436186	NM_001042440	ENSG00000153113	CAST	BS-17	calpastatin	protein-coding
chr13.114446697.+	chr13	114446697	114446698	+	0	NA	Intergenic	Intergenic	7365	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr2.241363419.+	chr2	241363419	241363420	+	0	NA	Intergenic	Intergenic	-11696	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr17.57868966.-	chr17	57868966	57868967	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49661	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr1.27259615.+	chr1	27259615	27259616	+	0	NA	"intron (NM_006600, intron 2 of 8)"	AluSg|SINE|Alu	11402	NM_006600	10726	Hs.263812	NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C homolog (A. nidulans)	protein-coding
chr14.64299510.-	chr14	64299510	64299511	-	0	NA	Intergenic	AluJb|SINE|Alu	20173	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr18.11867669.+	chr18	11867669	11867670	+	0	NA	"intron (NM_182978, intron 8 of 11)"	AluYk4|SINE|Alu	10232	NM_001261444	2774	Hs.741448	NM_002071	ENSG00000141404	GNAL	-	"guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type"	protein-coding
chr19.34248228.-	chr19	34248228	34248229	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39523	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr10.64708093.-	chr10	64708093	64708094	-	0	NA	Intergenic	SVA_E|Other|Other	129166	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr1.78230458.-	chr1	78230458	78230459	-	0	NA	Intergenic	AluSz|SINE|Alu	4894	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr18.77627552.-	chr18	77627552	77627553	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3884	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr7.55379514.+	chr7	55379514	55379515	+	0	NA	Intergenic	SVA_D|Other|Other	-53627	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr11.119091843.-	chr11	119091843	119091844	-	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	-14857	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr10.135192238.+	chr10	135192238	135192239	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-503	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr18.63211160.+	chr18	63211160	63211161	+	0	NA	Intergenic	AluY|SINE|Alu	-206328	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr7.100210406.+	chr7	100210406	100210407	+	0	NA	"5' UTR (NM_023948, exon 1 of 5)"	"5' UTR (NM_023948, exon 1 of 5)"	292	NM_023948	64598	Hs.521086	NM_001040097	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
chr16.70133260.-	chr16	70133260	70133261	-	0	NA	Intergenic	AluY|SINE|Alu	14269	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr7.118277720.+	chr7	118277720	118277721	+	0	NA	Intergenic	AluY|SINE|Alu	413008	NM_019644	56311	Hs.729340	NM_001077708	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
chr3.195498038.+	chr3	195498038	195498039	+	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	40806	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr10.28821791.+	chr10	28821791	28821792	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	369	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr10.88526554.+	chr10	88526554	88526555	+	0	NA	"intron (NM_004329, intron 1 of 12)"	AluYk4|SINE|Alu	10158	NM_004329	657	Hs.524477	NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK3|CD292|SKR5	"bone morphogenetic protein receptor, type IA"	protein-coding
chr12.112407373.+	chr12	112407373	112407374	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSx3|SINE|Alu	43650	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr9.10974542.-	chr9	10974542	10974543	-	0	NA	Intergenic	L1PBa|LINE|L1	361819	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr12.6890935.+	chr12	6890935	6890936	+	0	NA	Intergenic	AluY|SINE|Alu	-7703	NM_001195015	920	Hs.631659	NM_000616	ENSG00000010610	CD4	CD4mut	CD4 molecule	protein-coding
chr11.777240.+	chr11	777240	777241	+	0	NA	"intron (NM_182612, intron 1 of 7)"	CpG	247	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr10.80830048.-	chr10	80830048	80830049	-	0	NA	"intron (NM_020338, intron 1 of 24)"	CpG-2984	-1256	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	"zinc finger, MIZ-type containing 1"	protein-coding
chr2.136633748.+	chr2	136633748	136633749	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	299	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr18.23534228.+	chr18	23534228	23534229	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	136383	NM_001007559	6760	Hs.129261	NM_001007559	ENSG00000141380	SS18	SSXT|SYT	"synovial sarcoma translocation, chromosome 18"	protein-coding
chr8.57184594.-	chr8	57184594	57184595	-	0	NA	Intergenic	SVA_D|Other|Other	-48647	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr17.74632787.+	chr17	74632787	74632788	+	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	7107	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chrX.42145003.-	chrX	42145003	42145004	-	0	NA	Intergenic	SVA_D|Other|Other	362716	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr2.76117595.-	chr2	76117595	76117596	-	0	NA	Intergenic	AluY|SINE|Alu	179484	NM_001201335	6936	Hs.710597	NM_001201334	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
chr12.117605455.-	chr12	117605455	117605456	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22845	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr10.131769816.-	chr10	131769816	131769817	-	0	NA	Intergenic	CpG-3433	7725	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr20.33062686.+	chr20	33062686	33062687	+	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	8556	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chrX.53111612.+	chrX	53111612	53111613	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	70	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr3.9398148.-	chr3	9398148	9398149	-	0	NA	Intergenic	AluY|SINE|Alu	6569	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr15.29132972.-	chr15	29132972	29132973	-	0	NA	Intergenic	Intergenic	39151	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr12.31509288.-	chr12	31509288	31509289	-	0	NA	Intergenic	AluSp|SINE|Alu	30129	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr8.1321552.+	chr8	1321552	1321553	+	0	NA	Intergenic	CpG	-70725	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr8.143356713.-	chr8	143356713	143356714	-	0	NA	"intron (NM_145003, intron 11 of 13)"	"intron (NM_145003, intron 11 of 13)"	-76996	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr13.44947817.-	chr13	44947817	44947818	-	0	NA	promoter-TSS (NM_001010897)	promoter-TSS (NM_001010897)	161	NM_001010897	387923	Hs.377972	NM_001010897	ENSG00000151778	SERP2	C13orf21|RP11-269C23.1|bA269C23.1	stress-associated endoplasmic reticulum protein family member 2	protein-coding
chr12.8961492.-	chr12	8961492	8961493	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	13658	NM_144670	144568	Hs.620532	NM_144670	ENSG00000166535	A2ML1	CPAMD9	alpha-2-macroglobulin-like 1	protein-coding
chr19.58883655.-	chr19	58883655	58883656	-	0	NA	"intron (NM_138466, intron 1 of 2)"	AluSq|SINE|Alu	-8734	NR_049780	116412	Hs.222236	NM_001129730	ENSG00000152475	ZNF837	-	zinc finger protein 837	protein-coding
chr3.88595863.-	chr3	88595863	88595864	-	0	NA	Intergenic	AluSc8|SINE|Alu	396847	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr9.10974532.+	chr9	10974532	10974533	+	0	NA	Intergenic	L1PBa|LINE|L1	-361809	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.71357866.+	chr2	71357866	71357867	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	422	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr11.69189597.-	chr11	69189597	69189598	-	0	NA	Intergenic	Intergenic	-127975	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr13.96681127.+	chr13	96681127	96681128	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24609	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr16.4537764.-	chr16	4537764	4537765	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8095	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr9.138663325.+	chr9	138663325	138663326	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69294	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr17.48631027.-	chr17	48631027	48631028	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6577	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr2.26396731.-	chr2	26396731	26396732	-	0	NA	"intron (NM_001168241, intron 1 of 5)"	CpG	-771	NM_001168241	150946	Hs.187912	NM_001168241	ENSG00000157833	GAREML	FAM59B	"GRB2 associated, regulator of MAPK1-like"	protein-coding
chr11.9503843.+	chr11	9503843	9503844	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21331	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr22.24237324.+	chr22	24237324	24237325	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	759	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr8.21101029.-	chr8	21101029	21101030	-	0	NA	Intergenic	AluYb8|SINE|Alu	-269532	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr1.161879478.+	chr1	161879478	161879479	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114166	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr2.43254180.-	chr2	43254180	43254181	-	0	NA	Intergenic	Intergenic	-199565	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr3.73614842.+	chr3	73614842	73614843	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59230	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr7.1071473.-	chr7	1071473	1071474	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	8811	NR_029898	442907		NR_029898		MIR339	MIRN339|hsa-mir-339	microRNA 339	miscRNA
chr17.3317554.-	chr17	3317554	3317555	-	0	NA	Intergenic	AluSc8|SINE|Alu	6308	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr7.156795111.+	chr7	156795111	156795112	+	0	NA	Intergenic	Intergenic	7018	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr1.22469132.-	chr1	22469132	22469133	-	0	NA	"intron (NM_030761, intron 1 of 4)"	CpG	-387	NM_030761	54361	Hs.25766	NM_030761		WNT4	SERKAL|WNT-4	"wingless-type MMTV integration site family, member 4"	protein-coding
chr16.89740571.+	chr16	89740571	89740572	+	0	NA	Intergenic	Intergenic	-12505	NM_001098533	8558	Hs.699177	NM_001098533	ENSG00000185324	CDK10	PISSLRE	cyclin-dependent kinase 10	protein-coding
chr16.31103065.+	chr16	31103065	31103066	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2935	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr3.136117018.-	chr3	136117018	136117019	-	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	-147851	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr5.1887188.+	chr5	1887188	1887189	+	0	NA	Intergenic	CpG-20520	-4308	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr16.1228052.+	chr16	1228052	1228053	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24811	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr6.45365140.-	chr6	45365140	45365141	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19352	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr5.175831755.-	chr5	175831755	175831756	-	0	NA	"intron (NM_007097, intron 2 of 5)"	"intron (NM_007097, intron 2 of 5)"	-11815	NM_001834	1212	Hs.484241	NM_001834	ENSG00000175416	CLTB	LCB	"clathrin, light chain B"	protein-coding
chr2.60946440.-	chr2	60946440	60946441	-	0	NA	Intergenic	AluY|SINE|Alu	36925	NM_022894	64895	Hs.387471	NM_022894		PAPOLG	-	poly(A) polymerase gamma	protein-coding
chr2.15359957.-	chr2	15359957	15359958	-	0	NA	"intron (NM_015909, intron 47 of 51)"	SVA_E|Other|Other	-341515	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
chr20.46019382.+	chr20	46019382	46019383	+	0	NA	Intergenic	AluYb8|SINE|Alu	-33908	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr6.126111966.-	chr6	126111966	126111967	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-57	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr19.45678441.-	chr19	45678441	45678442	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3060	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr2.61306974.-	chr2	61306974	61306975	-	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	-13611	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr7.73149766.-	chr7	73149766	73149767	-	0	NA	TTS (NR_026910)	TTS (NR_026910)	-367	NR_026690	171022	Hs.650513	NR_026690	ENSG00000225969	LINC00035	ABHD11-AS1|NCRNA00035|WBSCR26	long intergenic non-protein coding RNA 35	miscRNA
chr15.80696587.-	chr15	80696587	80696588	-	0	NA	promoter-TSS (NM_014862)	promoter-TSS (NM_014862)	105	NM_014862	9915	Hs.459070	NM_014862	ENSG00000172379	ARNT2	bHLHe1	aryl-hydrocarbon receptor nuclear translocator 2	protein-coding
chr17.72262232.+	chr17	72262232	72262233	+	0	NA	Intergenic	AluJb|SINE|Alu	-8154	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr12.34191972.-	chr12	34191972	34191973	-	0	NA	Intergenic	AluSp|SINE|Alu	-16756	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.80188697.-	chr2	80188697	80188698	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	312212	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr5.162886985.-	chr5	162886985	162886986	-	0	NA	promoter-TSS (NM_012484)	promoter-TSS (NM_012484)	-158	NM_145266	134492	Hs.140443	NM_145266	ENSG00000170584	NUDCD2	-	NudC domain containing 2	protein-coding
chr13.21872288.-	chr13	21872288	21872289	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-24	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chrX.145491229.+	chrX	145491229	145491230	+	0	NA	Intergenic	AluSx|SINE|Alu	-381839	NR_030581	100126341		NR_030581	ENSG00000216056	MIR891A	MIRN891A	microRNA 891a	miscRNA
chr2.191771947.-	chr2	191771947	191771948	-	0	NA	"intron (NM_001256310, intron 6 of 14)"	AluY|SINE|Alu	-26400	NM_014905	2744	Hs.737608	NM_001256310	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
chr22.38213288.+	chr22	38213288	38213289	+	0	NA	TTS (NM_014291)	TTS (NM_014291)	-6101	NM_003614	8484	Hs.158353	NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
chr22.43238166.-	chr22	43238166	43238167	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15242	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr16.4823701.-	chr16	4823701	4823702	-	0	NA	Intergenic	AluSq2|SINE|Alu	6535	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr20.62108037.+	chr20	62108037	62108038	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4044	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr15.30396189.+	chr15	30396189	30396190	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	254	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr2.20424098.-	chr2	20424098	20424099	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-829	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr18.29729797.-	chr18	29729797	29729798	-	0	NA	Intergenic	AluSp|SINE|Alu	40190	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr9.68414088.-	chr9	68414088	68414089	-	0	NA	Intergenic	Intergenic	-40287	NR_033907	642236	Hs.650100	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
chr12.64883641.+	chr12	64883641	64883642	+	0	NA	"intron (NM_013254, intron 12 of 20)"	AluSc8|SINE|Alu	37801	NM_013254	29110	Hs.505874	NM_013254	ENSG00000183735	TBK1	NAK|T2K	TANK-binding kinase 1	protein-coding
chr8.6644924.+	chr8	6644924	6644925	+	0	NA	Intergenic	AluY|SINE|Alu	-42163	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr2.101747950.-	chr2	101747950	101747951	-	0	NA	"intron (NM_001102426, intron 1 of 19)"	AluSp|SINE|Alu	-19896	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	"TBC1 domain family, member 8 (with GRAM domain)"	protein-coding
chr17.79427781.-	chr17	79427781	79427782	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9567	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr13.108435251.+	chr13	108435251	108435252	+	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	84209	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr3.8721184.-	chr3	8721184	8721185	-	0	NA	Intergenic	Intergenic	27420	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr3.36494716.-	chr3	36494716	36494717	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72619	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr9.90472375.-	chr9	90472375	90472376	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1596	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chr14.102109516.+	chr14	102109516	102109517	+	0	NA	Intergenic	AluY|SINE|Alu	81828	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr18.63211133.-	chr18	63211133	63211134	-	0	NA	Intergenic	AluY|SINE|Alu	206355	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr9.37378520.-	chr9	37378520	37378521	-	0	NA	Intergenic	Intergenic	44187	NM_012203	9380	Hs.155742	NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate reductase/hydroxypyruvate reductase	protein-coding
chr5.89746530.+	chr5	89746530	89746531	+	0	NA	Intergenic	AluSz|SINE|Alu	24055	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr17.30920852.-	chr17	30920852	30920853	-	0	NA	"intron (NM_015194, intron 21 of 21)"	AluSx3|SINE|Alu	-106747	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	"cyclin-dependent kinase 5, regulatory subunit 1 (p35)"	protein-coding
chr21.47343989.+	chr21	47343989	47343990	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-57674	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr19.9311202.-	chr19	9311202	9311203	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14345	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr17.45078492.+	chr17	45078492	45078493	+	0	NA	Intergenic	Intergenic	-21878	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr18.19630096.+	chr18	19630096	19630097	+	0	NA	Intergenic	AluY|SINE|Alu	-119308	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr6.56708368.-	chr6	56708368	56708369	-	0	NA	promoter-TSS (NM_183380)	promoter-TSS (NM_183380)	-95	NM_183380	667	Hs.735651	XM_003403438	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|HSAN6|MACF2	dystonin	protein-coding
chr18.2377802.+	chr18	2377802	2377803	+	0	NA	Intergenic	AluSg7|SINE|Alu	193687	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr12.117605460.-	chr12	117605460	117605461	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22840	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr16.56642541.+	chr16	56642541	56642542	+	0	NA	promoter-TSS (NM_005953)	promoter-TSS (NM_005953)	63	NM_005953	4502	Hs.647371	NM_005953		MT2A	MT2	metallothionein 2A	protein-coding
chr12.96314634.-	chr12	96314634	96314635	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21794	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr5.612619.-	chr5	612619	612620	-	0	NA	"intron (NM_018140, intron 1 of 11)"	CpG	-214	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72kDa	protein-coding
chr15.57662565.+	chr15	57662565	57662566	+	0	NA	Intergenic	AluSx|SINE|Alu	-6138	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr4.166248570.+	chr4	166248570	166248571	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-248	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr5.176075318.-	chr5	176075318	176075319	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-930	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr10.97383347.-	chr10	97383347	97383348	-	0	NA	"intron (NM_001017423, intron 11 of 17)"	AluSp|SINE|Alu	-33220	NM_001017423	5832	Hs.500645	NM_001017423	ENSG00000059573	ALDH18A1	ARCL3A|GSAS|P5CS|PYCS	"aldehyde dehydrogenase 18 family, member A1"	protein-coding
chr1.28908609.+	chr1	28908609	28908610	+	0	NA	promoter-TSS (NR_024127)	promoter-TSS (NR_024127)	-243	NR_024127	85028	Hs.632377	NR_024127	ENSG00000197989	SNHG12	C1orf79|LINC00100|NCRNA00100|RP4-669K10.5	small nucleolar RNA host gene 12 (non-protein coding)	miscRNA
chr20.62127639.+	chr20	62127639	62127640	+	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	3029	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr5.159429720.+	chr5	159429720	159429721	+	0	NA	Intergenic	AluSz|SINE|Alu	-6460	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr13.100353724.-	chr13	100353724	100353725	-	0	NA	"intron (NM_206808, intron 1 of 8)"	AluY|SINE|Alu	-58411	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr16.89323968.-	chr16	89323968	89323969	-	0	NA	Intergenic	LTR1|LTR|ERV1	-39857	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chr10.13344432.-	chr10	13344432	13344433	-	0	NA	Intergenic	CpG	2302	NM_006214	5264	Hs.498732	NM_001037537	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
chr6.43502792.-	chr6	43502792	43502793	-	0	NA	"intron (NM_020750, intron 20 of 31)"	AluY|SINE|Alu	-18015	NM_203290	9533	Hs.743509	NM_203290	ENSG00000171453	POLR1C	RPA39|RPA40|RPA5|RPAC1|TCS3	"polymerase (RNA) I polypeptide C, 30kDa"	protein-coding
chr14.101693733.+	chr14	101693733	101693734	+	0	NA	Intergenic	Intergenic	157485	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr12.107215607.-	chr12	107215607	107215608	-	0	NA	"intron (NM_018157, intron 3 of 8)"	AluY|SINE|Alu	46998	NR_040246	100287944	Hs.742087	NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	miscRNA
chr13.41635401.+	chr13	41635401	41635402	+	0	NA	promoter-TSS (NM_007187)	promoter-TSS (NM_007187)	-296	NM_007187	11193	Hs.411300	NM_007187	ENSG00000120688	WBP4	FBP21	WW domain binding protein 4	protein-coding
chr4.8913716.-	chr4	8913716	8913717	-	0	NA	Intergenic	Intergenic	37761	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr10.99146578.+	chr10	99146578	99146579	+	0	NA	"intron (NM_015179, intron 8 of 33)"	AluY|SINE|Alu	14549	NM_015179	23223	Hs.434251	NM_001145114	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding
chr9.43582530.+	chr9	43582530	43582531	+	0	NA	Intergenic	AluY|SINE|Alu	48200	NM_001145196	389730	Hs.455299	NM_001145196	ENSG00000185775	SPATA31A6	FAM75A6	"SPATA31 subfamily A, member 6"	protein-coding
chr18.77627527.-	chr18	77627527	77627528	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3859	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr10.129705934.+	chr10	129705934	129705935	+	0	NA	"intron (NM_006504, intron 1 of 20)"	CpG	609	NM_006504	5791	Hs.127022	NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	"protein tyrosine phosphatase, receptor type, E"	protein-coding
chr10.6985568.-	chr10	6985568	6985569	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164008	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr22.18251503.-	chr22	18251503	18251504	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4478	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr17.78888147.-	chr17	78888147	78888148	-	0	NA	"intron (NM_020761, intron 21 of 33)"	MER52A|LTR|ERV1	77494	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr7.66480051.+	chr7	66480051	66480052	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18259	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr8.7877742.+	chr8	7877742	7877743	+	0	NA	Intergenic	Intergenic	-22699	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr8.8559298.+	chr8	8559298	8559299	+	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	-368	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr1.32122154.+	chr1	32122154	32122155	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11316	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr5.39649163.+	chr5	39649163	39649164	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223828	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr9.12352926.+	chr9	12352926	12352927	+	0	NA	Intergenic	Intergenic	-340460	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr22.44475824.+	chr22	44475824	44475825	+	0	NA	"intron (NM_001243385, intron 1 of 12)"	"intron (NM_001243385, intron 1 of 12)"	10827	NM_001243385	29780	Hs.475074	NM_001003828	ENSG00000188677	PARVB	CGI-56	"parvin, beta"	protein-coding
chr12.6167263.-	chr12	6167263	6167264	-	0	NA	"intron (NM_000552, intron 13 of 51)"	"intron (NM_000552, intron 13 of 51)"	-66573	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
chr19.49186312.-	chr19	49186312	49186313	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10048	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chrX.19862937.-	chrX	19862937	19862938	-	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	-42807	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr16.74363419.-	chr16	74363419	74363420	-	0	NA	Intergenic	Intergenic	-32746	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 7"	protein-coding
chr12.101802412.-	chr12	101802412	101802413	-	0	NA	promoter-TSS (NM_001177)	promoter-TSS (NM_001177)	840	NM_001177	400	Hs.732900	NM_001177	ENSG00000120805	ARL1	ARFL1	ADP-ribosylation factor-like 1	protein-coding
chr15.76627278.+	chr15	76627278	76627279	+	0	NA	Intergenic	AluSg|SINE|Alu	-1869	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr1.145075925.-	chr1	145075925	145075926	-	0	NA	"5' UTR (NM_022359, exon 1 of 7)"	"5' UTR (NM_022359, exon 1 of 7)"	-261	NM_022359	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr3.42642400.-	chr3	42642400	42642401	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-172	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr16.78590776.+	chr16	78590776	78590777	+	0	NA	"intron (NM_016373, intron 8 of 8)"	AluSq|SINE|Alu	457449	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr12.30327132.+	chr12	30327132	30327133	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389440	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr10.28933539.+	chr10	28933539	28933540	+	0	NA	Intergenic	AluSz|SINE|Alu	-32885	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	protein-coding
chr14.64299473.+	chr14	64299473	64299474	+	0	NA	Intergenic	AluJb|SINE|Alu	-20210	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr17.79848959.+	chr17	79848959	79848960	+	0	NA	promoter-TSS (NM_016476)	promoter-TSS (NM_016476)	503	NM_005782	10189	Hs.534385	NM_005782	ENSG00000183684	ALYREF	ALY|ALY/REF|BEF|REF|THOC4	Aly/REF export factor	protein-coding
chr10.79670491.-	chr10	79670491	79670492	-	0	NA	"intron (NM_004747, intron 1 of 31)"	AluSz6|SINE|Alu	-15857	NM_004747	9231	Hs.652690	NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG	"discs, large homolog 5 (Drosophila)"	protein-coding
chr16.30960868.-	chr16	30960868	30960869	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-463	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr2.27588388.+	chr2	27588388	27588389	+	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	4531	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr21.38150557.+	chr21	38150557	38150558	+	0	NA	"intron (NM_000411, intron 7 of 11)"	AluY|SINE|Alu	78566	NM_009586	6493	Hs.146186	NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	single-minded homolog 2 (Drosophila)	protein-coding
chr14.77227769.-	chr14	77227769	77227770	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	466	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr9.127626582.+	chr9	127626582	127626583	+	0	NA	Intergenic	AluSx|SINE|Alu	-2342	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chrX.153881580.-	chrX	153881580	153881581	-	0	NA	"exon (NM_020994, exon 1 of 2)"	"exon (NM_020994, exon 1 of 2)"	-273	NM_172377	30848	Hs.87225	NM_020994	ENSG00000126890	CTAG2	CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B	cancer/testis antigen 2	protein-coding
chr10.43563316.+	chr10	43563316	43563317	+	0	NA	Intergenic	Intergenic	-9201	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr2.202898656.-	chr2	202898656	202898657	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	654	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr8.146017403.+	chr8	146017403	146017404	+	0	NA	"exon (NM_000973, exon 2 of 6)"	"exon (NM_000973, exon 2 of 6)"	326	NM_033301	6132	Hs.178551	NM_000973	ENSG00000161016	RPL8	L8	ribosomal protein L8	protein-coding
chr22.34378892.-	chr22	34378892	34378893	-	0	NA	Intergenic	AluSx1|SINE|Alu	62476	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr14.32736855.-	chr14	32736855	32736856	-	0	NA	Intergenic	AluY|SINE|Alu	61624	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
chr7.62940002.-	chr7	62940002	62940003	-	0	NA	Intergenic	AluYf4|SINE|Alu	80583	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr22.18839318.+	chr22	18839318	18839319	+	0	NA	Intergenic	Intergenic	-54418	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr3.85742646.+	chr3	85742646	85742647	+	0	NA	"intron (NM_001256503, intron 2 of 9)"	AluYk4|SINE|Alu	-32986	NM_153184	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr15.62739853.+	chr15	62739853	62739854	+	0	NA	Intergenic	AluY|SINE|Alu	197527	NR_026897	197003	Hs.352253	NR_026897	ENSG00000259458	MGC15885	-	uncharacterized protein MGC15885	miscRNA
chr8.26532427.+	chr8	26532427	26532428	+	0	NA	Intergenic	AluSp|SINE|Alu	96506	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr6.97372262.-	chr6	97372262	97372263	-	0	NA	promoter-TSS (NM_052904)	promoter-TSS (NM_052904)	234	NM_052904	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch-like family member 32	protein-coding
chr1.36675721.-	chr1	36675721	36675722	-	0	NA	Intergenic	AluSc8|SINE|Alu	14296	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
chrX.20094549.-	chrX	20094549	20094550	-	0	NA	"intron (NM_152780, intron 1 of 15)"	AluSq|SINE|Alu	-40207	NM_001168467	256714	Hs.127951	NM_001168465	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
chr4.113704349.+	chr4	113704349	113704350	+	0	NA	Intergenic	AluSg|SINE|Alu	-34890	NM_001127493	287	Hs.620557	NM_001127493	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	"ankyrin 2, neuronal"	protein-coding
chr19.34538941.+	chr19	34538941	34538942	+	0	NA	Intergenic	AluYc|SINE|Alu	-124411	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr2.102558944.+	chr2	102558944	102558945	+	0	NA	Intergenic	AluY|SINE|Alu	-49362	NM_004633	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	"interleukin 1 receptor, type II"	protein-coding
chr3.47744677.+	chr3	47744677	47744678	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78728	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr1.10727954.+	chr1	10727954	10727955	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128779	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr13.103088654.-	chr13	103088654	103088655	-	0	NA	Intergenic	AluY|SINE|Alu	34530	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr17.57409160.-	chr17	57409160	57409161	-	0	NA	"5' UTR (NM_001005404, exon 1 of 5)"	"5' UTR (NM_001005404, exon 1 of 5)"	-107	NM_001005404	388403	Hs.463613	NM_001005404	ENSG00000175155	YPEL2	-	yippee-like 2 (Drosophila)	protein-coding
chr19.33557617.-	chr19	33557617	33557618	-	0	NA	Intergenic	Intergenic	1793	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr2.232557218.+	chr2	232557218	232557219	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16017	NM_002823	5757	Hs.459927	NM_001099285	ENSG00000187514	PTMA	TMSA	"prothymosin, alpha"	protein-coding
chr22.38213296.+	chr22	38213296	38213297	+	0	NA	TTS (NM_014291)	TTS (NM_014291)	-6093	NM_003614	8484	Hs.158353	NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
chr10.13354497.-	chr10	13354497	13354498	-	0	NA	Intergenic	AluSp|SINE|Alu	12367	NM_006214	5264	Hs.498732	NM_001037537	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
chr9.105365734.-	chr9	105365734	105365735	-	0	NA	Intergenic	SVA_B|Other|Other	391859	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr20.5213476.-	chr20	5213476	5213477	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81539	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr13.111268083.+	chr13	111268083	111268084	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	152	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr11.30606093.-	chr11	30606093	30606094	-	0	NA	"intron (NM_001145399, intron 1 of 6)"	CpG	-1837	NM_001145399	744	Hs.289795	NM_001145399	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
chr9.26820721.+	chr9	26820721	26820722	+	0	NA	Intergenic	AluY|SINE|Alu	72105	NM_024828	79886	Hs.178357	NM_001167575	ENSG00000120159	CAAP1	C9orf82|CAAP|RP11-337A23.1	caspase activity and apoptosis inhibitor 1	protein-coding
chr11.110016912.+	chr11	110016912	110016913	+	0	NA	"intron (NM_033390, intron 2 of 5)"	AluY|SINE|Alu	52825	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
chr19.10587525.-	chr19	10587525	10587526	-	0	NA	Intergenic	AluSq2|SINE|Alu	-23892	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr9.134666230.+	chr9	134666230	134666231	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-53305	NM_005312	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
chr19.6945168.-	chr19	6945168	6945169	-	0	NA	Intergenic	AluY|SINE|Alu	-45689	NR_024075	326342	Hs.688043	NR_024075	ENSG00000268758	EMR4P	EMR4|FIRE|GPR127|PGR16	"egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene"	pseudo
chr20.4699498.+	chr20	4699498	4699499	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3058	NM_012409	23627	Hs.406696	NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion protein 2 (dublet)	protein-coding
chr9.26219150.-	chr9	26219150	26219151	-	0	NA	Intergenic	AluY|SINE|Alu	-152477	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr5.17207868.-	chr5	17207868	17207869	-	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	9064	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr10.133203403.+	chr10	133203403	133203404	+	0	NA	Intergenic	Intergenic	-93419	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr2.192374848.+	chr2	192374848	192374849	+	0	NA	Intergenic	AluY|SINE|Alu	-167950	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr10.131991878.-	chr10	131991878	131991879	-	0	NA	Intergenic	Intergenic	-57239	NM_001199868	10539	Hs.42644	NM_001199868	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
chr2.137180761.-	chr2	137180761	137180762	-	0	NA	Intergenic	AluSq2|SINE|Alu	305036	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr8.67618052.-	chr8	67618052	67618053	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6601	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr2.208475935.+	chr2	208475935	208475936	+	0	NA	"3' UTR (NM_145280, exon 4 of 4)"	"3' UTR (NM_145280, exon 4 of 4)"	13761	NM_145280	151194	Hs.664764	NM_001127395	ENSG00000144401	METTL21A	FAM119A|HCA557b	methyltransferase like 21A	protein-coding
chr6.167607724.-	chr6	167607724	167607725	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23643	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr7.102113006.+	chr7	102113006	102113007	+	0	NA	TTS (NM_006234)	TTS (NM_006234)	1090	NR_039677	100616367		NR_039677		MIR4467	-	microRNA 4467	miscRNA
chr20.55247410.+	chr20	55247410	55247411	+	0	NA	Intergenic	AluSz6|SINE|Alu	43052	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr15.91370840.+	chr15	91370840	91370841	+	0	NA	Intergenic	AluSz|SINE|Alu	-41045	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr2.1554722.+	chr2	1554722	1554723	+	0	NA	Intergenic	Intergenic	136542	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr11.45810282.+	chr11	45810282	45810283	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15341	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr9.130734282.+	chr9	130734282	130734283	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8530	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr2.19132831.-	chr2	19132831	19132832	-	0	NA	Intergenic	AluYk4|SINE|Alu	361985	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr19.47980134.+	chr19	47980134	47980135	+	0	NA	"exon (NM_007059, exon 10 of 12)"	"exon (NM_007059, exon 10 of 12)"	-4827	NM_015063	6543	Hs.172884	NM_015063	ENSG00000118160	SLC8A2	NCX2	"solute carrier family 8 (sodium/calcium exchanger), member 2"	protein-coding
chr19.4124232.+	chr19	4124232	4124233	+	0	NA	promoter-TSS (NM_030662)	promoter-TSS (NM_030662)	-106	NM_030662	5605	Hs.465627	NM_030662	ENSG00000126934	MAP2K2	MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
chr14.101693708.-	chr14	101693708	101693709	-	0	NA	Intergenic	Intergenic	-157460	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr10.6985548.-	chr10	6985548	6985549	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163988	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chrX.68956261.+	chrX	68956261	68956262	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120350	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr2.20424099.+	chr2	20424099	20424100	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	828	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr9.121872007.-	chr9	121872007	121872008	-	0	NA	Intergenic	AluYk4|SINE|Alu	-259732	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr19.58125590.+	chr19	58125590	58125591	+	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	-240	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr1.17298983.-	chr1	17298983	17298984	-	0	NA	"3' UTR (NM_014675, exon 37 of 37)"	"3' UTR (NM_014675, exon 37 of 37)"	-8190	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr20.45936055.-	chr20	45936055	45936056	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11191	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr13.47509483.+	chr13	47509483	47509484	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-38272	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr10.12344475.+	chr10	12344475	12344476	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47108	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr1.228134608.+	chr1	228134608	228134609	+	0	NA	"intron (NM_003395, intron 1 of 3)"	CpG	1068	NM_003395	7483	Hs.149504	NM_003395		WNT9A	WNT14	"wingless-type MMTV integration site family, member 9A"	protein-coding
chr6.143858225.+	chr6	143858225	143858226	+	0	NA	Intergenic	CpG	24960	NR_027114	285740	Hs.432656	NR_027113		LOC285740	-	uncharacterized LOC285740	miscRNA
chr11.725953.-	chr11	725953	725954	-	0	NA	"intron (NM_022772, intron 17 of 20)"	CpG-3663	-19833	NM_022772	64787	Hs.55016	NM_022772	ENSG00000177106	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
chrX.9366103.+	chrX	9366103	9366104	+	0	NA	Intergenic	AluY|SINE|Alu	-65232	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr7.993304.-	chr7	993304	993305	-	0	NA	"intron (NM_006869, intron 1 of 10)"	"intron (NM_006869, intron 1 of 10)"	-985	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr8.7414113.+	chr8	7414113	7414114	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2513	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr19.2187830.-	chr19	2187830	2187831	-	0	NA	"intron (NM_032482, intron 3 of 27)"	AluY|SINE|Alu	-23682	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr9.38829840.+	chr9	38829840	38829841	+	0	NA	Intergenic	AluY|SINE|Alu	208755	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr5.172640591.+	chr5	172640591	172640592	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21724	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr5.115953563.-	chr5	115953563	115953564	-	0	NA	Intergenic	AluY|SINE|Alu	43012	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr1.211752524.-	chr1	211752524	211752525	-	0	NA	promoter-TSS (NM_021194)	promoter-TSS (NM_021194)	425	NM_021194	7779	Hs.744253	NM_021194		SLC30A1	ZNT1|ZRC1	"solute carrier family 30 (zinc transporter), member 1"	protein-coding
chr16.85203572.-	chr16	85203572	85203573	-	0	NA	Intergenic	CpG	-32816	NR_033984	400548	Hs.592054	NR_033984		LOC400548	-	uncharacterized LOC400548	miscRNA
chr7.107220406.-	chr7	107220406	107220407	-	0	NA	promoter-TSS (NR_027830)	promoter-TSS (NR_027830)	16	NM_018844	55973	Hs.303787	NM_001008406	ENSG00000075790	BCAP29	BAP29	B-cell receptor-associated protein 29	protein-coding
chrX.100277483.+	chrX	100277483	100277484	+	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	29622	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr11.2213917.+	chr11	2213917	2213918	+	0	NA	Intergenic	Intergenic	19624	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr12.9892354.-	chr12	9892354	9892355	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6459	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr19.34623422.+	chr19	34623422	34623423	+	0	NA	Intergenic	SVA_D|Other|Other	-39930	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr17.73584039.-	chr17	73584039	73584040	-	0	NA	promoter-TSS (NR_003587)	promoter-TSS (NR_003587)	100	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000188126	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
chr8.22594701.-	chr8	22594701	22594702	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43886	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr18.14856554.+	chr18	14856554	14856555	+	0	NA	Intergenic	SVA_F|Other|Other	26389	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	miscRNA
chr1.62231210.-	chr1	62231210	62231211	-	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	-23061	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chrX.112142816.-	chrX	112142816	112142817	-	0	NA	Intergenic	AluY|SINE|Alu	58773	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr2.10405923.+	chr2	10405923	10405924	+	0	NA	Intergenic	Intergenic	-37107	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr3.80581466.+	chr3	80581466	80581467	+	0	NA	Intergenic	AluSg|SINE|Alu	-764407	NM_002941	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr18.63211148.+	chr18	63211148	63211149	+	0	NA	Intergenic	AluY|SINE|Alu	-206340	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr12.46411954.+	chr12	46411954	46411955	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-27553	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr4.186887721.-	chr4	186887721	186887722	-	0	NA	Intergenic	AluSx1|SINE|Alu	9851	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr2.240401994.+	chr2	240401994	240401995	+	0	NA	Intergenic	Intergenic	-79351	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr19.51005304.-	chr19	51005304	51005305	-	0	NA	Intergenic	Intergenic	-9112	NM_138334	126119	Hs.737597	NM_001270639	ENSG00000161677	JOSD2	-	Josephin domain containing 2	protein-coding
chr9.32897669.+	chr9	32897669	32897670	+	0	NA	Intergenic	AluY|SINE|Alu	103905	NR_036579	54840	Hs.20158	NM_001195248	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
chr19.46914701.+	chr19	46914701	46914702	+	0	NA	"exon (NM_032040, exon 1 of 1)"	"exon (NM_032040, exon 1 of 1)"	2218	NM_032040	83987	Hs.744359	NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
chr14.88199423.-	chr14	88199423	88199424	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260192	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr12.3383082.-	chr12	3383082	3383083	-	0	NA	"intron (NM_006675, intron 3 of 8)"	"intron (NM_006675, intron 3 of 8)"	107433	NM_001256536	56341	Hs.504530	NM_001256537	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
chr17.17894807.+	chr17	17894807	17894808	+	0	NA	"intron (NM_031294, intron 5 of 13)"	AluSc8|SINE|Alu	18680	NM_001130092	83450	Hs.579264	NM_001130090	ENSG00000171962	LRRC48	-	leucine rich repeat containing 48	protein-coding
chr15.41613495.-	chr15	41613495	41613496	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11324	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr2.25667226.+	chr2	25667226	25667227	+	0	NA	"intron (NM_001256303, intron 12 of 19)"	AluSx1|SINE|Alu	-101767	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr17.4896924.+	chr17	4896924	4896925	+	0	NA	"intron (NM_001167985, intron 3 of 7)"	AluY|SINE|Alu	3981	NM_213726	388324	Hs.658926	NM_001167985	ENSG00000196388	INCA1	-	"inhibitor of CDK, cyclin A1 interacting protein 1"	protein-coding
chr1.90240199.+	chr1	90240199	90240200	+	0	NA	Intergenic	AluSx3|SINE|Alu	-46374	NM_001134479	55144	Hs.482087	NM_001134479	ENSG00000171492	LRRC8D	LRRC5	"leucine rich repeat containing 8 family, member D"	protein-coding
chr12.132116786.-	chr12	132116786	132116787	-	0	NA	Intergenic	L1ME1|LINE|L1	78846	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr3.49479573.+	chr3	49479573	49479574	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12816	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr19.868066.+	chr19	868066	868067	+	0	NA	"3' UTR (NM_005481, exon 16 of 16)"	"3' UTR (NM_005481, exon 16 of 16)"	8401	NM_001928	1675	Hs.155597	NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D (adipsin)	protein-coding
chr4.96098066.+	chr4	96098066	96098067	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85424	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr4.129835333.+	chr4	129835333	129835334	+	0	NA	"intron (NM_144643, intron 18 of 20)"	AluY|SINE|Alu	104554	NM_024900	79960	Hs.12420	NM_024900	ENSG00000077684	PHF17	JADE1	PHD finger protein 17	protein-coding
chr1.9832312.-	chr1	9832312	9832313	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52238	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr7.5583888.-	chr7	5583888	5583889	-	0	NA	Intergenic	AluY|SINE|Alu	13656	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr17.27717845.+	chr17	27717845	27717846	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-98	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr11.31555086.-	chr11	31555086	31555087	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluYk4|SINE|Alu	-23789	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr10.45240298.+	chr10	45240298	45240299	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166466	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chrX.19894333.-	chrX	19894333	19894334	-	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSx1|SINE|Alu	-11411	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr8.51361357.-	chr8	51361357	51361358	-	0	NA	"intron (NM_018967, intron 5 of 18)"	AluY|SINE|Alu	-536760	NM_018967	54212	Hs.584914	NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	"syntrophin, gamma 1"	protein-coding
chr10.64708104.-	chr10	64708104	64708105	-	0	NA	Intergenic	SVA_E|Other|Other	129177	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr15.50450645.+	chr15	50450645	50450646	+	0	NA	Intergenic	SVA_D|Other|Other	-23748	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	"solute carrier family 27 (fatty acid transporter), member 2"	protein-coding
chr12.11974594.+	chr12	11974594	11974595	+	0	NA	"intron (NR_046487, intron 1 of 3)"	AluJr|SINE|Alu	104513	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19	-	"RNA, U6 small nuclear 19"	snRNA
chr9.77401535.+	chr9	77401535	77401536	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100728	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr7.2803012.+	chr7	2803012	2803013	+	0	NA	"intron (NM_007353, intron 2 of 3)"	"intron (NM_007353, intron 2 of 3)"	80947	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr11.94771071.+	chr11	94771071	94771072	+	0	NA	Intergenic	CpG	12649	NM_001161630	390245	Hs.714692	NM_001161630	ENSG00000235268	KDM4E	JMJD2E|KDM4DL	lysine (K)-specific demethylase 4E	protein-coding
chr13.50297725.-	chr13	50297725	50297726	-	0	NA	"intron (NM_002267, intron 7 of 16)"	L1MB8|LINE|L1	32102	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr5.74566605.+	chr5	74566605	74566606	+	0	NA	Intergenic	SVA_F|Other|Other	-33902	NM_001164443	256006	Hs.482533	NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
chr3.22843192.-	chr3	22843192	22843193	-	0	NA	Intergenic	L1PA2|LINE|L1	401592	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr13.50177036.+	chr13	50177036	50177037	+	0	NA	Intergenic	AluY|SINE|Alu	-17317	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr4.148516405.-	chr4	148516405	148516406	-	0	NA	Intergenic	AluY|SINE|Alu	22134	NM_018241	55751	Hs.203896	NM_018241		TMEM184C	TMEM34	transmembrane protein 184C	protein-coding
chr2.207270716.-	chr2	207270716	207270717	-	0	NA	Intergenic	AluY|SINE|Alu	37652	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr2.242529423.+	chr2	242529423	242529424	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	27493	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr4.38809149.+	chr4	38809149	38809150	+	0	NA	Intergenic	SVA_D|Other|Other	-2737	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr11.62551853.+	chr11	62551853	62551854	+	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	-3021	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr2.137180655.-	chr2	137180655	137180656	-	0	NA	Intergenic	AluSq2|SINE|Alu	304930	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr14.64299474.-	chr14	64299474	64299475	-	0	NA	Intergenic	AluJb|SINE|Alu	20209	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr8.94702755.-	chr8	94702755	94702756	-	0	NA	"intron (NR_033858, intron 1 of 10)"	AluSq2|SINE|Alu	-9906	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	miscRNA
chr10.35559809.+	chr10	35559809	35559810	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23856	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr3.88595898.+	chr3	88595898	88595899	+	0	NA	Intergenic	AluSc8|SINE|Alu	-396882	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr17.18285951.+	chr17	18285951	18285952	+	0	NA	"exon (NM_001145127, exon 5 of 11)"	"exon (NM_001145127, exon 5 of 11)"	4872	NM_001145127	645027	Hs.462400	NM_001145127	ENSG00000214860	EVPLL	-	envoplakin-like	protein-coding
chr1.32731828.+	chr1	32731828	32731829	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7884	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr16.89034180.-	chr16	89034180	89034181	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9324	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr6.149638371.-	chr6	149638371	149638372	-	0	NA	Intergenic	CpG	1065	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr16.13983424.+	chr16	13983424	13983425	+	0	NA	Intergenic	SVA_B|Other|Other	-30590	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr19.19410475.+	chr19	19410475	19410476	+	0	NA	"intron (NM_172231, intron 7 of 13)"	AluY|SINE|Alu	20846	NM_172231	57794	Hs.515274	NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G patch domain containing 1	protein-coding
chr14.60336421.-	chr14	60336421	60336422	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1136	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr7.50673346.-	chr7	50673346	50673347	-	0	NA	"intron (NM_001001549, intron 10 of 14)"	"intron (NM_001001549, intron 10 of 14)"	40192	NM_001082971	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
chr12.50621255.+	chr12	50621255	50621256	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4767	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr13.45945073.+	chr13	45945073	45945074	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29593	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr2.220430153.+	chr2	220430153	220430154	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6115	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr17.10812871.-	chr17	10812871	10812872	-	0	NA	Intergenic	AluY|SINE|Alu	71453	NM_001101387	644139	Hs.553909	NM_001101387		PIRT	-	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding
chr9.77401552.-	chr9	77401552	77401553	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100711	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr8.52446940.+	chr8	52446940	52446941	+	0	NA	"intron (NM_144651, intron 4 of 22)"	SVA_F|Other|Other	275065	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr7.1147521.+	chr7	1147521	1147522	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19798	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr2.10205122.+	chr2	10205122	10205123	+	0	NA	"intron (NM_001037160, intron 2 of 2)"	AluSz|SINE|Alu	15416	NM_001037160	192668	Hs.720471	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
chrX.91037181.+	chrX	91037181	91037182	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2921	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr19.3810430.-	chr19	3810430	3810431	-	0	NA	"intron (NM_015174, intron 16 of 18)"	"intron (NM_015174, intron 16 of 18)"	8620	NM_002378	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chr21.47343965.-	chr21	47343965	47343966	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57698	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr12.106533451.+	chr12	106533451	106533452	+	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	360	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr5.141558676.+	chr5	141558676	141558677	+	0	NA	Intergenic	AluSg|SINE|Alu	70352	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr4.148782390.-	chr4	148782390	148782391	-	0	NA	"intron (NM_024605, intron 5 of 22)"	MER52A|LTR|ERV1	-78644	NR_039962	100616246		NR_039962		MIR4799	-	microRNA 4799	miscRNA
chr5.694001.+	chr5	694001	694002	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-491	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr11.41644655.+	chr11	41644655	41644656	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-163469	NM_020929	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr21.43198289.+	chr21	43198289	43198290	+	0	NA	Intergenic	Intergenic	-11040	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr5.501534.+	chr5	501534	501535	+	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	23015	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr14.93129947.-	chr14	93129947	93129948	-	0	NA	"intron (NM_024832, intron 7 of 9)"	"intron (NM_024832, intron 7 of 9)"	-85100	NM_001008530	5641	Hs.18069	NM_001008530	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
chr1.51984039.-	chr1	51984039	51984040	-	0	NA	"intron (NM_001981, intron 1 of 24)"	"intron (NM_001981, intron 1 of 24)"	-956	NM_001981	2060	Hs.83722	NM_001159969	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
chr14.101371246.-	chr14	101371246	101371247	-	0	NA	"intron (NR_024149, intron 2 of 3)"	"intron (NR_024149, intron 2 of 3)"	-10139	NR_024149	79104	Hs.655789	NR_024149	ENSG00000258399	MEG8	Bsr|Irm|LINC00024|NCRNA00024|Rian	maternally expressed 8 (non-protein coding)	miscRNA
chr2.242810433.+	chr2	242810433	242810434	+	0	NA	Intergenic	Intergenic	-1453	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr17.4697278.-	chr17	4697278	4697279	-	0	NA	Intergenic	AluY|SINE|Alu	2161	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr5.99267188.+	chr5	99267188	99267189	+	0	NA	Intergenic	AluY|SINE|Alu	456770	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	"glucuronidase, beta pseudogene"	pseudo
chr16.68233566.+	chr16	68233566	68233567	+	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	36570	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chrX.153657086.+	chrX	153657086	153657087	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	108	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr22.46303257.+	chr22	46303257	46303258	+	0	NA	Intergenic	Intergenic	69751	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr1.40254814.-	chr1	40254814	40254815	-	0	NA	promoter-TSS (NM_001720)	promoter-TSS (NM_001720)	281	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr5.3188309.+	chr5	3188309	3188310	+	0	NA	Intergenic	CpG	347899	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr6.1610250.+	chr6	1610250	1610251	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-431	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr6.41395552.+	chr6	41395552	41395553	+	0	NA	Intergenic	CpG	92024	NM_001199510	9436	Hs.194721	NM_001199509	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
chr1.10727931.+	chr1	10727931	10727932	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128802	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr20.62029545.-	chr20	62029545	62029546	-	0	NA	Intergenic	Intergenic	36797	NM_001256573	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr17.25676749.-	chr17	25676749	25676750	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55643	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr6.35656619.-	chr6	35656619	35656620	-	0	NA	promoter-TSS (NM_001145777)	promoter-TSS (NM_001145777)	-73	NM_001145776	2289	Hs.407190	NM_001145775	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FK506 binding protein 5	protein-coding
chr2.62733294.-	chr2	62733294	62733295	-	0	NA	"5' UTR (NM_198276, exon 1 of 4)"	"5' UTR (NM_198276, exon 1 of 4)"	-310	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr13.77954547.-	chr13	77954547	77954548	-	0	NA	Intergenic	AluSc|SINE|Alu	53370	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr21.27382883.-	chr21	27382883	27382884	-	0	NA	"intron (NM_001136016, intron 6 of 16)"	AluSx1|SINE|Alu	-129825	NM_001136016	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
chr3.72397145.+	chr3	72397145	72397146	+	0	NA	Intergenic	Intergenic	98629	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
chr1.108113225.-	chr1	108113225	108113226	-	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	-117901	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr9.127626458.-	chr9	127626458	127626459	-	0	NA	Intergenic	Intergenic	2218	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr3.195498017.+	chr3	195498017	195498018	+	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	40827	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr13.21894218.-	chr13	21894218	21894219	-	0	NA	"intron (NR_046461, intron 2 of 4)"	CpG	-21954	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr7.56143794.-	chr7	56143794	56143795	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11877	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr6.132823924.+	chr6	132823924	132823925	+	0	NA	"intron (NM_003569, intron 2 of 9)"	AluY|SINE|Alu	10413	NM_003569	8417	Hs.605992	NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
chr2.237068277.-	chr2	237068277	237068278	-	0	NA	Intergenic	CpG	-8375	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr3.122695694.+	chr3	122695694	122695695	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-713	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr2.38824992.-	chr2	38824992	38824993	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5186	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr3.77641900.+	chr3	77641900	77641901	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494737	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chrX.37894867.+	chrX	37894867	37894868	+	0	NA	"intron (NM_138780, intron 2 of 16)"	"intron (NM_138780, intron 2 of 16)"	2080	NM_001163334	94122	Hs.662334	NM_001163334	ENSG00000147041	SYTL5	slp5	synaptotagmin-like 5	protein-coding
chr1.62231186.-	chr1	62231186	62231187	-	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	-23037	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr10.28821774.-	chr10	28821774	28821775	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-352	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr10.12223739.-	chr10	12223739	12223740	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14222	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr20.33005275.+	chr20	33005275	33005276	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48855	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr1.40953643.+	chr1	40953643	40953644	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10341	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr1.97228916.+	chr1	97228916	97228917	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41741	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr14.90254568.+	chr14	90254568	90254569	+	0	NA	Intergenic	AluSx|SINE|Alu	166521	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr11.2213900.+	chr11	2213900	2213901	+	0	NA	Intergenic	Intergenic	19607	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr7.811048.-	chr7	811048	811049	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43735	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr14.104622906.+	chr14	104622906	104622907	+	0	NA	"intron (NM_015656, intron 3 of 14)"	"intron (NM_015656, intron 3 of 14)"	17846	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
chr1.16166953.+	chr1	16166953	16166954	+	0	NA	"intron (NR_024279, intron 1 of 1)"	AluSc8|SINE|Alu	-7406	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chr4.186887786.-	chr4	186887786	186887787	-	0	NA	Intergenic	AluSx1|SINE|Alu	9916	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr20.62127649.+	chr20	62127649	62127650	+	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	3019	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr18.55790697.+	chr18	55790697	55790698	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25868	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr4.135249700.+	chr4	135249700	135249701	+	0	NA	Intergenic	Intergenic	-126797	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	"poly(A) binding protein, cytoplasmic 4-like"	protein-coding
chr12.96314718.-	chr12	96314718	96314719	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21710	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr1.145400454.+	chr1	145400454	145400455	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12737	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr9.20614274.+	chr9	20614274	20614275	+	0	NA	"intron (NM_004529, intron 2 of 10)"	AluSq2|SINE|Alu	8240	NM_004529	4300	Hs.591085	NM_004529		MLLT3	AF9|YEATS3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3"	protein-coding
chr2.79863147.-	chr2	79863147	79863148	-	0	NA	"intron (NM_001164883, intron 1 of 16)"	AluY|SINE|Alu	-13338	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr19.44489501.-	chr19	44489501	44489502	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1179	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr11.9243392.+	chr11	9243392	9243393	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43481	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr5.178491407.+	chr5	178491407	178491408	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluJo|SINE|Alu	3800	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr19.1237380.+	chr19	1237380	1237381	+	0	NA	"intron (NM_152769, intron 1 of 8)"	CpG	610	NM_152769	255057	Hs.346575	NM_152769	ENSG00000099625	C19orf26	DOS	chromosome 19 open reading frame 26	protein-coding
chr10.24081685.+	chr10	24081685	24081686	+	0	NA	"intron (NM_001098500, intron 1 of 18)"	AluY|SINE|Alu	98010	NM_001098500	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chrX.19862935.+	chrX	19862935	19862936	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42809	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr3.102973908.+	chr3	102973908	102973909	+	0	NA	Intergenic	SVA_D|Other|Other	820049	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr1.201857798.-	chr1	201857798	201857799	-	0	NA	promoter-TSS (NR_030775)	promoter-TSS (NR_030775)	-1	NR_030775	149345	Hs.632471	NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa homolog 4 (Xenopus laevis)	protein-coding
chr9.130734353.+	chr9	130734353	130734354	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8459	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr19.8599182.+	chr19	8599182	8599183	+	0	NA	"intron (NM_012335, intron 19 of 27)"	"intron (NM_012335, intron 19 of 27)"	-20134	NM_001146175	84330	Hs.515114	NM_001146175	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
chr2.87655683.+	chr2	87655683	87655684	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-99291	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr1.16481197.+	chr1	16481197	16481198	+	0	NA	"intron (NM_004431, intron 1 of 16)"	AluSq2|SINE|Alu	1385	NM_004431	1969	Hs.171596	NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|ECK	EPH receptor A2	protein-coding
chr2.237068289.-	chr2	237068289	237068290	-	0	NA	Intergenic	CpG	-8363	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr5.178157704.+	chr5	178157704	178157705	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-1	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr17.74707128.+	chr17	74707128	74707129	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-72	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr6.74964953.+	chr6	74964953	74964954	+	0	NA	Intergenic	SVA_C|Other|Other	559439	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr22.27947643.+	chr22	27947643	27947644	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	249843	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
chr5.1494497.+	chr5	1494497	1494498	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29579	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chrX.145183602.+	chrX	145183602	145183603	+	0	NA	Intergenic	AluJb|SINE|Alu	-74212	NR_030581	100126341		NR_030581	ENSG00000216056	MIR891A	MIRN891A	microRNA 891a	miscRNA
chr2.204453287.-	chr2	204453287	204453288	-	0	NA	Intergenic	AluSc8|SINE|Alu	53229	NM_203365	65059	Hs.471162	NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
chr5.39649194.-	chr5	39649194	39649195	-	0	NA	Intergenic	AluSx3|SINE|Alu	223859	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr1.79749327.-	chr1	79749327	79749328	-	0	NA	Intergenic	AluSx|SINE|Alu	276832	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr16.70148605.+	chr16	70148605	70148606	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1076	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr21.32687760.-	chr21	32687760	32687761	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243530	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr10.12405362.+	chr10	12405362	12405363	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13779	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr1.31248138.-	chr1	31248138	31248139	-	0	NA	Intergenic	Intergenic	17455	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr12.45135208.+	chr12	45135208	45135209	+	0	NA	"intron (NM_001145108, intron 9 of 19)"	L1PA4|LINE|L1	134236	NM_001145109	4753	Hs.505326	NM_001145107	ENSG00000184613	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
chr10.38249291.-	chr10	38249291	38249292	-	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	-16162	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chr19.45347424.-	chr19	45347424	45347425	-	0	NA	Intergenic	AluSg|SINE|Alu	1969	NM_002856	5819	Hs.655455	NM_001042724	ENSG00000130202	PVRL2	CD112|HVEB|PRR2|PVRR2	poliovirus receptor-related 2 (herpesvirus entry mediator B)	protein-coding
chr12.133141215.-	chr12	133141215	133141216	-	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	-45822	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr7.56109500.-	chr7	56109500	56109501	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9768	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr19.7123163.-	chr19	7123163	7123164	-	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	-53692	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr1.43189326.-	chr1	43189326	43189327	-	0	NA	Intergenic	AluJr|SINE|Alu	-16599	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr16.1123331.+	chr16	1123331	1123332	+	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	575	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr2.79329549.-	chr2	79329549	79329550	-	0	NA	Intergenic	AluY|SINE|Alu	14399	NM_006507	5968	Hs.708865	NM_006507	ENSG00000172023	REG1B	PSPS2|REGH|REGI-BETA|REGL	regenerating islet-derived 1 beta	protein-coding
chr21.47222404.+	chr21	47222404	47222405	+	0	NA	Intergenic	Intergenic	33929	NR_038876	100129027	Hs.689591	NR_038876	ENSG00000205424	LOC100129027	-	uncharacterized LOC100129027	miscRNA
chr3.104745275.+	chr3	104745275	104745276	+	0	NA	Intergenic	AluY|SINE|Alu	-340282	NM_001243283	214	Hs.740441	NM_001243280	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
chr3.40498953.+	chr3	40498953	40498954	+	0	NA	"5' UTR (NM_001034996, exon 1 of 6)"	"5' UTR (NM_001034996, exon 1 of 6)"	123	NM_001034996	9045	Hs.446522	NM_001034996	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|hRL14	ribosomal protein L14	protein-coding
chr9.34969446.-	chr9	34969446	34969447	-	0	NA	"intron (NM_015297, intron 1 of 7)"	AluSc8|SINE|Alu	-11254	NM_015297	23349	Hs.7989	NM_015297	ENSG00000122733	KIAA1045	RP11-392A14.4	KIAA1045	protein-coding
chr8.140776805.-	chr8	140776805	140776806	-	0	NA	"intron (NM_031466, intron 21 of 22)"	"intron (NM_031466, intron 21 of 22)"	61506	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr16.1228062.+	chr16	1228062	1228063	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24821	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr6.33500274.-	chr6	33500274	33500275	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47796	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr3.31533135.+	chr3	31533135	31533136	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41356	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chrX.53125771.+	chrX	53125771	53125772	+	0	NA	Intergenic	AluJb|SINE|Alu	14229	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.40801257.-	chr5	40801257	40801258	-	0	NA	Intergenic	SVA_E|Other|Other	2960	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr9.140343840.+	chr9	140343840	140343841	+	0	NA	"3' UTR (NM_001130969, exon 16 of 16)"	"3' UTR (NM_001130969, exon 16 of 16)"	-7939	NM_001033113	377841	Hs.512562	NM_001033113	ENSG00000188833	ENTPD8	GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
chr5.138488041.-	chr5	138488041	138488042	-	0	NA	"intron (NM_022464, intron 1 of 9)"	AluSx1|SINE|Alu	-46024	NM_022464	64374	Hs.483521	NM_001037633	ENSG00000120725	SIL1	BAP|MSS|ULG5	"SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)"	protein-coding
chr2.242710934.+	chr2	242710934	242710935	+	0	NA	Intergenic	CpG	-5306	NM_022134	64090	Hs.632556	NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
chr1.27503609.-	chr1	27503609	27503610	-	0	NA	Intergenic	Intergenic	21988	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr19.23432204.+	chr19	23432204	23432205	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx|SINE|Alu	968	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chrM.3664.-	chrM	3664	3665	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.41868011.-	chr19	41868011	41868012	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1860	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr8.107670102.+	chr8	107670102	107670103	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	66	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr22.32012815.-	chr22	32012815	32012816	-	0	NA	"exon (NM_001258325, exon 28 of 31)"	"exon (NM_001258325, exon 28 of 31)"	-13995	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
chr2.242500533.-	chr2	242500533	242500534	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1975	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr8.62051821.-	chr8	62051821	62051822	-	0	NA	Intergenic	CpG	148704	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
chr9.21968290.-	chr9	21968290	21968291	-	0	NA	TTS (NR_024274)	TTS (NR_024274)	-1152	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr2.109745683.-	chr2	109745683	109745684	-	0	NA	promoter-TSS (NM_001099289)	promoter-TSS (NM_001099289)	314	NM_001099289	344558	Hs.535157	NM_001099289		SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
chr22.43238170.-	chr22	43238170	43238171	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15238	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr13.112722086.-	chr13	112722086	112722087	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-173	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr17.36083197.-	chr17	36083197	36083198	-	0	NA	"intron (NM_001165923, intron 4 of 8)"	AluY|SINE|Alu	-21899	NM_000458	6928	Hs.191144	NM_000458	ENSG00000108753	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
chr10.103518224.-	chr10	103518224	103518225	-	0	NA	Intergenic	Intergenic	-17535	NM_033163	2253	Hs.57710	NM_001206389		FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8 (androgen-induced)	protein-coding
chr1.154218153.-	chr1	154218153	154218154	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	AluY|SINE|Alu	-24828	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr20.46019528.+	chr20	46019528	46019529	+	0	NA	Intergenic	AluY|SINE|Alu	-34054	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr20.33136233.-	chr20	33136233	33136234	-	0	NA	"intron (NM_181509, intron 1 of 4)"	"intron (NM_181509, intron 1 of 4)"	-1545	NM_181509	84557	Hs.632273	NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule-associated protein 1 light chain 3 alpha	protein-coding
chr13.112722099.-	chr13	112722099	112722100	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-186	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr12.8830910.-	chr12	8830910	8830911	-	0	NA	Intergenic	FLAM_C|SINE|Alu	15477	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr6.33806256.+	chr6	33806256	33806257	+	0	NA	Intergenic	Intergenic	-34463	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr5.118406951.+	chr5	118406951	118406952	+	0	NA	promoter-TSS (NM_005509)	promoter-TSS (NM_005509)	-133	NM_005509	1657	Hs.181042	NM_005509	ENSG00000172869	DMXL1	-	Dmx-like 1	protein-coding
chr19.20713427.+	chr19	20713427	20713428	+	0	NA	Intergenic	SVA_D|Other|Other	35199	NM_001159293	100129842	Hs.515696	NM_001159293		ZNF737	ZNF102	zinc finger protein 737	protein-coding
chr19.53979666.+	chr19	53979666	53979667	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8677	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr4.100907295.+	chr4	100907295	100907296	+	0	NA	Intergenic	AluY|SINE|Alu	35659	NR_002799	256880	Hs.448554	NR_002799		LOC256880	-	uncharacterized LOC256880	miscRNA
chr8.37698947.+	chr8	37698947	37698948	+	0	NA	"exon (NM_032777, exon 19 of 19)"	"exon (NM_032777, exon 19 of 19)"	8484	NM_018310	55290	Hs.709301	NM_018310		BRF2	BRFU|TFIIIB50	"BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like"	protein-coding
chr2.198058495.-	chr2	198058495	198058496	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117026	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr1.2586419.-	chr1	2586419	2586420	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	21938	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr1.39107572.+	chr1	39107572	39107573	+	0	NA	Intergenic	LTR1B|LTR|ERV1	217923	NM_022157	64121	Hs.532461	NM_001271851		RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
chr14.30397296.+	chr14	30397296	30397297	+	0	NA	promoter-TSS (NM_002742)	promoter-TSS (NM_002742)	-397	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
chr9.6858659.+	chr9	6858659	6858660	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101018	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr1.16972910.+	chr1	16972910	16972911	+	0	NA	"non-coding (NR_027504, exon 2 of 14)"	"non-coding (NR_027504, exon 2 of 14)"	841	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr18.12710231.+	chr18	12710231	12710232	+	0	NA	"intron (NM_147163, intron 2 of 6)"	AluY|SINE|Alu	7244	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr9.35846393.-	chr9	35846393	35846394	-	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	13878	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr20.33296665.+	chr20	33296665	33296666	+	0	NA	"exon (NM_021202, exon 3 of 5)"	"exon (NM_021202, exon 3 of 5)"	4517	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr16.71814175.+	chr16	71814175	71814176	+	0	NA	"intron (NM_001030007, intron 2 of 23)"	AluSz|SINE|Alu	-21785	NR_003059	692111		NR_003059		SNORD71	HBII-239|MIRN768|hsa-mir-768	"small nucleolar RNA, C/D box 71"	snoRNA
chr17.26336774.-	chr17	26336774	26336775	-	0	NA	Intergenic	AluSz|SINE|Alu	32914	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr14.101892587.+	chr14	101892587	101892588	+	0	NA	Intergenic	AluY|SINE|Alu	129426	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr15.75494209.+	chr15	75494209	75494210	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-12	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr2.38870489.-	chr2	38870489	38870490	-	0	NA	Intergenic	LTR12C|LTR|ERV1	22563	NM_138801	130589	Hs.435012	NM_138801	ENSG00000143891	GALM	IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
chr8.110510479.-	chr8	110510479	110510480	-	0	NA	"intron (NM_177531, intron 65 of 77)"	AluYb8|SINE|Alu	41450	NM_198120	9166	Hs.409368	NM_004215	ENSG00000147654	EBAG9	EB9|PDAF|RCAS1	"estrogen receptor binding site associated, antigen, 9"	protein-coding
chr3.84566264.+	chr3	84566264	84566265	+	0	NA	Intergenic	AluY|SINE|Alu	352462	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr7.5583936.-	chr7	5583936	5583937	-	0	NA	Intergenic	AluY|SINE|Alu	13704	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr22.20051185.-	chr22	20051185	20051186	-	0	NA	"intron (NM_152906, intron 8 of 8)"	"intron (NM_152906, intron 8 of 8)"	16570	NM_001190326	54487	Hs.713579	NM_001190326	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DiGeorge syndrome critical region gene 8	protein-coding
chr1.94375260.+	chr1	94375260	94375261	+	0	NA	promoter-TSS (NM_002061)	promoter-TSS (NM_002061)	-248	NM_002061	2730	Hs.315562	NM_002061		GCLM	GLCLR	"glutamate-cysteine ligase, modifier subunit"	protein-coding
chrX.53808334.+	chrX	53808334	53808335	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94637	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr4.39561460.-	chr4	39561460	39561461	-	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	-32001	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr12.132157775.-	chr12	132157775	132157776	-	0	NA	Intergenic	Intergenic	37857	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr16.632090.-	chr16	632090	632091	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7267	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr20.61885474.-	chr20	61885474	61885475	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-144	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr1.937270.+	chr1	937270	937271	+	0	NA	Intergenic	CpG-24	-1718	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr18.10581571.+	chr18	10581571	10581572	+	0	NA	Intergenic	AluSq2|SINE|Alu	55698	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr1.248020514.-	chr1	248020514	248020515	-	0	NA	promoter-TSS (NM_015431)	promoter-TSS (NM_015431)	-13	NM_015431	25893	Hs.269151	NM_015431		TRIM58	BIA2	tripartite motif containing 58	protein-coding
chr5.170737069.+	chr5	170737069	170737070	+	0	NA	"intron (NM_021025, intron 1 of 2)"	CpG-21367	781	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr9.37650826.+	chr9	37650826	37650827	+	0	NA	promoter-TSS (NM_014907)	promoter-TSS (NM_014907)	-226	NM_014907	22844	Hs.163990	NM_014907	ENSG00000070601	FRMPD1	FRMD2	FERM and PDZ domain containing 1	protein-coding
chr12.116724230.-	chr12	116724230	116724231	-	0	NA	Intergenic	AluY|SINE|Alu	9239	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr16.4835178.-	chr16	4835178	4835179	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3220	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr5.179167539.-	chr5	179167539	179167540	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7688	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chrX.81762785.-	chrX	81762785	81762786	-	0	NA	Intergenic	AluY|SINE|Alu	1000484	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr10.28821814.+	chr10	28821814	28821815	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	392	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr14.55349976.-	chr14	55349976	55349977	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5065	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr5.178287367.+	chr5	178287367	178287368	+	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	413	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr9.131639013.-	chr9	131639013	131639014	-	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	-5341	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr11.47059758.+	chr11	47059758	47059759	+	0	NA	"intron (NM_024113, intron 2 of 8)"	SVA_D|Other|Other	101507	NM_001003676	79096	Hs.368296	NM_001003676	ENSG00000149179	C11orf49	-	chromosome 11 open reading frame 49	protein-coding
chr1.227982881.+	chr1	227982881	227982882	+	0	NA	Intergenic	Intergenic	-20537	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr8.101322596.+	chr8	101322596	101322597	+	0	NA	promoter-TSS (NM_183419)	promoter-TSS (NM_183419)	-217	NM_183419	25897	Hs.292882	NM_015435	ENSG00000034677	RNF19A	DORFIN|RNF19	"ring finger protein 19A, E3 ubiquitin protein ligase"	protein-coding
chr10.97321127.-	chr10	97321127	97321128	-	0	NA	promoter-TSS (NM_015385)	promoter-TSS (NM_015385)	-44	NM_015385	10580	Hs.38621	NM_001034954	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
chr12.13293670.-	chr12	13293670	13293671	-	0	NA	Intergenic	Intergenic	37040	NM_001206842	83445	Hs.240053	NM_001080554	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
chr7.99699476.+	chr7	99699476	99699477	+	0	NA	promoter-TSS (NM_005916)	promoter-TSS (NM_005916)	-49	NM_005916	4176	Hs.438720	NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146	minichromosome maintenance complex component 7	protein-coding
chr18.46969361.-	chr18	46969361	46969362	-	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	-17718	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr14.102109506.-	chr14	102109506	102109507	-	0	NA	Intergenic	AluY|SINE|Alu	-81818	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chrX.141491561.-	chrX	141491561	141491562	-	0	NA	Intergenic	AluY|SINE|Alu	198485	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr1.178011421.+	chr1	178011421	178011422	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4279	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr5.36143000.-	chr5	36143000	36143001	-	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	-5090	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr4.185174157.+	chr4	185174157	185174158	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35043	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr10.11898815.-	chr10	11898815	11898816	-	0	NA	"intron (NM_153256, intron 2 of 3)"	"intron (NM_153256, intron 2 of 3)"	-33418	NM_153256	254427	Hs.435775	NM_153256	ENSG00000148426	PROSER2	C10orf47	proline and serine-rich protein 2	protein-coding
chr21.44846610.+	chr21	44846610	44846611	+	0	NA	"intron (NM_173354, intron 1 of 13)"	"intron (NM_173354, intron 1 of 13)"	392	NM_173354	150094	Hs.700423	NM_173354	ENSG00000142178	SIK1	MSK|SIK|SNF1LK	salt-inducible kinase 1	protein-coding
chr1.1574884.+	chr1	1574884	1574885	+	0	NA	"intron (NM_033486, intron 11 of 19)"	"intron (NM_033486, intron 11 of 19)"	6725	NR_002946	8511	Hs.671760	NR_002946	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
chr15.100514132.-	chr15	100514132	100514133	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167000	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr9.35605809.-	chr9	35605809	35605810	-	0	NA	"exon (NM_006285, exon 1 of 10)"	"exon (NM_006285, exon 1 of 10)"	-528	NM_006285	7016	Hs.708096	NM_006285	ENSG00000107140	TESK1	-	testis-specific kinase 1	protein-coding
chr8.27695257.-	chr8	27695257	27695258	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-92	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr6.88118047.+	chr6	88118047	88118048	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	357	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr16.1838766.+	chr16	1838766	1838767	+	0	NA	"3' UTR (NM_012225, exon 7 of 7)"	"3' UTR (NM_012225, exon 7 of 7)"	4968	NM_004970	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr21.45243643.-	chr21	45243643	45243644	-	0	NA	Intergenic	Intergenic	11195	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr15.75494067.+	chr15	75494067	75494068	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-154	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr3.50273631.+	chr3	50273631	50273632	+	0	NA	promoter-TSS (NM_002070)	promoter-TSS (NM_002070)	-16	NM_002070	2771	Hs.77269	NM_001166425	ENSG00000114353	GNAI2	GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1	"guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2"	protein-coding
chr11.24427778.-	chr11	24427778	24427779	-	0	NA	Intergenic	LTR1|LTR|ERV1	90738	NM_001009909	338645	Hs.655032	NM_001009909	ENSG00000187398	LUZP2	KFSP2566|PRO6246	leucine zipper protein 2	protein-coding
chr12.10362511.+	chr12	10362511	10362512	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2978	NM_031412	23710	Hs.524250	NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA(A) receptor-associated protein like 1	protein-coding
chr2.32250851.+	chr2	32250851	32250852	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	13993	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr2.103322633.-	chr2	103322633	103322634	-	0	NA	"intron (NM_003048, intron 11 of 11)"	AluYb8|SINE|Alu	-30704	NM_032718	84804	Hs.720914	NM_032718		MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
chr1.40260015.+	chr1	40260015	40260016	+	0	NA	Intergenic	AluY|SINE|Alu	-5482	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr19.36744749.-	chr19	36744749	36744750	-	0	NA	Intergenic	AluY|SINE|Alu	38763	NM_001042474	147929	Hs.596338	NM_001042474	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
chr17.65335495.-	chr17	65335495	65335496	-	0	NA	Intergenic	AluSx|SINE|Alu	-27226	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr10.131449510.-	chr10	131449510	131449511	-	0	NA	"intron (NM_002412, intron 2 of 4)"	"intron (NM_002412, intron 2 of 4)"	-184056	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
chr2.10916529.-	chr2	10916529	10916530	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36431	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr8.1323018.+	chr8	1323018	1323019	+	0	NA	Intergenic	Intergenic	-72191	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr12.125122416.+	chr12	125122416	125122417	+	0	NA	Intergenic	Intergenic	-70406	NM_001206654	9612	Hs.137510	NM_001077261	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
chr12.49076096.+	chr12	49076096	49076097	+	0	NA	promoter-TSS (NM_017822)	promoter-TSS (NM_017822)	-61	NM_017822	54934	Hs.505412	NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
chr20.54205909.+	chr20	54205909	54205910	+	0	NA	Intergenic	AluYk4|SINE|Alu	374619	NM_080617	140689	Hs.741877	NM_080617	ENSG00000054803	CBLN4	CBLNL1	cerebellin 4 precursor	protein-coding
chr20.2804839.-	chr20	2804839	2804840	-	0	NA	Intergenic	SVA_E|Other|Other	-7863	NM_001167670	100288797	Hs.664180	NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
chr20.19739693.-	chr20	19739693	19739694	-	0	NA	Intergenic	CpG	127472	NM_001242581	54453	Hs.472270	NM_001242581	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
chr22.38530991.+	chr22	38530991	38530992	+	0	NA	"intron (NM_001004426, intron 6 of 15)"	"intron (NM_001004426, intron 6 of 15)"	-24315	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr14.71374349.-	chr14	71374349	71374350	-	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	-227	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr20.60814217.-	chr20	60814217	60814218	-	0	NA	"intron (NM_014835, intron 1 of 13)"	CpG	-637	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr11.130241836.-	chr11	130241836	130241837	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56703	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr10.125228154.+	chr10	125228154	125228155	+	0	NA	Intergenic	AluY|SINE|Alu	-197717	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr9.95526672.+	chr9	95526672	95526673	+	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	411	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr15.100080081.+	chr15	100080081	100080082	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26052	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr16.87799881.+	chr16	87799881	87799882	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-283	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr7.33176795.+	chr7	33176795	33176796	+	0	NA	"intron (NM_014451, intron 1 of 20)"	MER52D|LTR|ERV1	7643	NM_001033605	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr20.33283578.-	chr20	33283578	33283579	-	0	NA	Intergenic	AluY|SINE|Alu	8570	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr13.77954567.+	chr13	77954567	77954568	+	0	NA	Intergenic	AluSc|SINE|Alu	-53390	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr1.101786734.-	chr1	101786734	101786735	-	0	NA	Intergenic	AluY|SINE|Alu	-19717	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chrX.48703100.-	chrX	48703100	48703101	-	0	NA	Intergenic	AluSx|SINE|Alu	9064	NM_013271	27344	Hs.522640	NM_013271	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
chr4.1400161.-	chr4	1400161	1400162	-	0	NA	Intergenic	CpG	-14821	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr17.79066966.+	chr17	79066966	79066967	+	0	NA	"intron (NM_017451, intron 6 of 14)"	"intron (NM_017451, intron 6 of 14)"	32207	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr17.80687686.+	chr17	80687686	80687687	+	0	NA	Intergenic	CpG	-5766	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr9.137588880.+	chr9	137588880	137588881	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55228	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr19.1132467.-	chr19	1132467	1132468	-	0	NA	promoter-TSS (NM_001100122)	promoter-TSS (NM_001100122)	194	NM_001100122	22904	Hs.408708	NM_001100122	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
chr19.5948210.+	chr19	5948210	5948211	+	0	NA	"intron (NM_007320, intron 2 of 15)"	AluY|SINE|Alu	30110	NM_003624	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
chr21.31598694.-	chr21	31598694	31598695	-	0	NA	Intergenic	AluSx4|SINE|Alu	10225	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr15.91370860.-	chr15	91370860	91370861	-	0	NA	Intergenic	AluSz|SINE|Alu	41025	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr8.56758532.-	chr8	56758532	56758533	-	0	NA	Intergenic	AluSx|SINE|Alu	33854	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr5.172640601.+	chr5	172640601	172640602	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21714	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr19.12606190.-	chr19	12606190	12606191	-	0	NA	Intergenic	CpG	10558	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr17.35829164.-	chr17	35829164	35829165	-	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	20787	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chr1.144932064.+	chr1	144932064	144932065	+	0	NA	promoter-TSS (NM_001002811)	promoter-TSS (NM_001002811)	-32	NM_001002811	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr2.159693875.+	chr2	159693875	159693876	+	0	NA	Intergenic	AluSp|SINE|Alu	42046	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr2.97426744.+	chr2	97426744	97426745	+	0	NA	"exon (NM_020184, exon 1 of 7)"	"exon (NM_020184, exon 1 of 7)"	105	NM_020184	26504	Hs.175043	NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin M4	protein-coding
chr3.122695621.-	chr3	122695621	122695622	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	640	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr17.74707127.+	chr17	74707127	74707128	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-71	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr7.2290237.-	chr7	2290237	2290238	-	0	NA	"intron (NM_198949, intron 4 of 4)"	AluY|SINE|Alu	-7697	NM_198953	4521	Hs.534331	NM_002452	ENSG00000106268	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
chr15.97879806.-	chr15	97879806	97879807	-	0	NA	Intergenic	AluSp|SINE|Alu	-537853	NR_024172	91948	Hs.130423	NR_024172	ENSG00000251209	LOC91948	-	uncharacterized LOC91948	miscRNA
chr8.249090.-	chr8	249090	249091	-	0	NA	Intergenic	Intergenic	-66706	NM_001042416	169270	Hs.591388	NM_001042415	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
chr16.375214.+	chr16	375214	375215	+	0	NA	"intron (NM_003502, intron 2 of 10)"	CpG	27462	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr18.11759072.-	chr18	11759072	11759073	-	0	NA	"intron (NM_182978, intron 4 of 11)"	AluSx1|SINE|Alu	-7601	NM_001142339	2774	Hs.741448	NM_002071	ENSG00000141404	GNAL	-	"guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type"	protein-coding
chr6.160985725.+	chr6	160985725	160985726	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53569	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr19.3219064.+	chr19	3219064	3219065	+	0	NA	Intergenic	AluY|SINE|Alu	-5637	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr12.31575319.-	chr12	31575319	31575320	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96160	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr6.21897080.+	chr6	21897080	21897081	+	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	230405	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr1.36611566.-	chr1	36611566	36611567	-	0	NA	"intron (NM_001270895, intron 1 of 4)"	AluY|SINE|Alu	-3549	NR_073098	27095	Hs.523131	NM_001270894	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
chr7.1474611.+	chr7	1474611	1474612	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24498	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr2.183903202.-	chr2	183903202	183903203	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-27	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr11.67346423.+	chr11	67346423	67346424	+	0	NA	Intergenic	AluY|SINE|Alu	-4643	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr11.119091979.-	chr11	119091979	119091980	-	0	NA	"intron (NM_005188, intron 1 of 15)"	"intron (NM_005188, intron 1 of 15)"	-14993	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chrM.16352.+	chrM	16352	16353	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr20.62127644.-	chr20	62127644	62127645	-	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	-3024	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr22.39437249.-	chr22	39437249	39437250	-	0	NA	"intron (NM_145298, intron 1 of 6)"	"intron (NM_145298, intron 1 of 6)"	-576	NM_001006666	200316	Hs.659809	NM_001006666		APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F"	protein-coding
chr4.4878314.+	chr4	4878314	4878315	+	0	NA	Intergenic	AluSx1|SINE|Alu	16922	NM_002448	4487	Hs.424414	NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
chr20.62479312.-	chr20	62479312	62479313	-	0	NA	Intergenic	Intergenic	13254	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr9.8858124.+	chr9	8858124	8858125	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124178	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr5.78890154.+	chr5	78890154	78890155	+	0	NA	Intergenic	AluY|SINE|Alu	-18089	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr11.68671230.-	chr11	68671230	68671231	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-73	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr19.13497349.+	chr19	13497349	13497350	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119925	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr16.88813183.-	chr16	88813183	88813184	-	0	NA	"intron (NM_001142864, intron 2 of 50)"	"intron (NM_001142864, intron 2 of 50)"	30438	NR_039873	100616167		NR_039873		MIR4722	-	microRNA 4722	miscRNA
chr10.64708124.+	chr10	64708124	64708125	+	0	NA	Intergenic	SVA_E|Other|Other	-129197	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chrX.153990965.+	chrX	153990965	153990966	+	0	NA	promoter-TSS (NM_001363)	promoter-TSS (NM_001363)	-66	NM_001142463	1736	Hs.4747	NM_001142463	ENSG00000130826	DKC1	CBF5|DKC|DKCX|NAP57|NOLA4|XAP101	"dyskeratosis congenita 1, dyskerin"	protein-coding
chr9.133788018.+	chr9	133788018	133788019	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18793	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr7.150069760.-	chr7	150069760	150069761	-	0	NA	"exon (NM_014374, exon 1 of 1)"	"exon (NM_014374, exon 1 of 1)"	-1502	NM_014374	29803	Hs.647086	NM_001099695	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
chr5.172640602.-	chr5	172640602	172640603	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-21713	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr12.2384434.-	chr12	2384434	2384435	-	0	NA	"intron (NR_046769, intron 1 of 2)"	"intron (NR_046769, intron 1 of 2)"	-5492	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	miscRNA
chr1.9832295.+	chr1	9832295	9832296	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52255	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr1.40052632.+	chr1	40052632	40052633	+	0	NA	Intergenic	AluSq|SINE|Alu	-10111	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr9.6559769.+	chr9	6559769	6559770	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85923	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr8.107670099.+	chr8	107670099	107670100	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	63	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr7.91257048.-	chr7	91257048	91257049	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252968	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr12.101802413.-	chr12	101802413	101802414	-	0	NA	promoter-TSS (NM_001177)	promoter-TSS (NM_001177)	841	NM_001177	400	Hs.732900	NM_001177	ENSG00000120805	ARL1	ARFL1	ADP-ribosylation factor-like 1	protein-coding
chr8.33580506.+	chr8	33580506	33580507	+	0	NA	Intergenic	CpG	-123067	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
chr1.8021837.-	chr1	8021837	8021838	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-123	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr10.99531879.+	chr10	99531879	99531880	+	0	NA	promoter-TSS (NM_003015)	promoter-TSS (NM_003015)	-123	NM_003015	6425	Hs.279565	NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled-related protein 5	protein-coding
chr7.6304962.-	chr7	6304962	6304963	-	0	NA	"intron (NM_004227, intron 1 of 12)"	AluSx3|SINE|Alu	-7280	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
chr9.124100222.-	chr9	124100222	124100223	-	0	NA	Intergenic	AluSq2|SINE|Alu	-32360	NR_073037	2040	Hs.253903	NM_001270526	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
chr1.62231203.+	chr1	62231203	62231204	+	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	23054	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr5.16561378.-	chr5	16561378	16561379	-	0	NA	"intron (NM_001034850, intron 3 of 8)"	AluY|SINE|Alu	52271	NM_019000	54463	Hs.744032	NM_001034850	ENSG00000154153	FAM134B	JK-1|JK1	"family with sequence similarity 134, member B"	protein-coding
chr10.135436362.+	chr10	135436362	135436363	+	0	NA	Intergenic	CpG	3937	NM_001080998	441581	Hs.690471	NM_001080998	ENSG00000225899	FRG2B	-	"FSHD region gene 2 family, member B"	protein-coding
chr14.24785812.+	chr14	24785812	24785813	+	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	3499	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr2.27592992.+	chr2	27592992	27592993	+	0	NA	promoter-TSS (NM_172195)	promoter-TSS (NM_172195)	-73	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr13.111268059.-	chr13	111268059	111268060	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-128	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chrX.70493574.-	chrX	70493574	70493575	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9468	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr16.22675459.-	chr16	22675459	22675460	-	0	NA	Intergenic	AluJr|SINE|Alu	54144	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr16.79553691.+	chr16	79553691	79553692	+	0	NA	Intergenic	Intergenic	80931	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	protein-coding
chr1.40137331.+	chr1	40137331	40137332	+	0	NA	"intron (NM_032526, intron 1 of 5)"	CpG	379	NM_032526	84618	Hs.307006	NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A	"5'-nucleotidase, cytosolic IA"	protein-coding
chr2.240402003.+	chr2	240402003	240402004	+	0	NA	Intergenic	Intergenic	-79360	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr16.49892632.+	chr16	49892632	49892633	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-802	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr8.145823452.+	chr8	145823452	145823453	+	0	NA	"intron (NM_025251, intron 3 of 12)"	"intron (NM_025251, intron 3 of 12)"	15436	NM_025251	80728	Hs.148988	NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
chr10.101292632.+	chr10	101292632	101292633	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-58	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr2.135476495.-	chr2	135476495	135476496	-	0	NA	promoter-TSS (NM_030923)	promoter-TSS (NM_030923)	-76	NM_030923	81615	Hs.595089	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding
chr7.5526752.+	chr7	5526752	5526753	+	0	NA	"intron (NM_024963, intron 4 of 4)"	"intron (NM_024963, intron 4 of 4)"	8796	NR_030318	693174		NR_030318		MIR589	MIRN589|hsa-mir-589	microRNA 589	miscRNA
chr19.9311326.-	chr19	9311326	9311327	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14221	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr12.112407451.+	chr12	112407451	112407452	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43572	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr21.45243635.-	chr21	45243635	45243636	-	0	NA	Intergenic	Intergenic	11187	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr9.131644303.-	chr9	131644303	131644304	-	0	NA	promoter-TSS (NM_019594)	promoter-TSS (NM_019594)	-51	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr1.6132060.+	chr1	6132060	6132061	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25886	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr6.24720999.-	chr6	24720999	24721000	-	0	NA	Intergenic	CpG	1596	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr19.589014.-	chr19	589014	589015	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	879	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr8.101661661.-	chr8	101661661	101661662	-	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	-232	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr19.14156321.-	chr19	14156321	14156322	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13650	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr4.1723288.+	chr4	1723288	1723289	+	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	71	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chrX.100277477.-	chrX	100277477	100277478	-	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	-29628	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr19.50670077.-	chr19	50670077	50670078	-	0	NA	Intergenic	AluSg|SINE|Alu	3539	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr19.23474398.-	chr19	23474398	23474399	-	0	NA	Intergenic	AluSx|SINE|Alu	41226	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr11.2015900.-	chr11	2015900	2015901	-	0	NA	TTS (NR_002196)	TTS (NR_002196)	-2161	NR_030533	100033819		NR_030533		MIR675	MIRN675|hsa-mir-675	microRNA 675	miscRNA
chrX.81762783.+	chrX	81762783	81762784	+	0	NA	Intergenic	AluY|SINE|Alu	-1000486	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr10.6264839.+	chr10	6264839	6264840	+	0	NA	"exon (NM_004566, exon 11 of 15)"	"exon (NM_004566, exon 11 of 15)"	19999	NM_004566	5209	Hs.195471	NM_001145443	ENSG00000170525	PFKFB3	IPFK2|PFK2	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3"	protein-coding
chr11.113114061.-	chr11	113114061	113114062	-	0	NA	"intron (NM_001076682, intron 17 of 19)"	"intron (NM_001076682, intron 17 of 19)"	-30562	NR_034101	100288346	Hs.661826	NR_034101	ENSG00000227487	LOC100288346	-	uncharacterized LOC100288346	miscRNA
chr7.45776041.-	chr7	45776041	45776042	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32576	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr7.66480050.+	chr7	66480050	66480051	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18258	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr17.36844055.+	chr17	36844055	36844056	+	0	NA	Intergenic	AluSx|SINE|Alu	-12868	NM_001130677	100170841	Hs.445574	NM_001130677	ENSG00000179294	C17orf96	-	chromosome 17 open reading frame 96	protein-coding
chr16.48126443.+	chr16	48126443	48126444	+	0	NA	"intron (NM_033226, intron 22 of 28)"	"intron (NM_033226, intron 22 of 28)"	54238	NM_033226	94160	Hs.410111	NM_033226	ENSG00000140798	ABCC12	MRP9	"ATP-binding cassette, sub-family C (CFTR/MRP), member 12"	protein-coding
chr9.87981533.-	chr9	87981533	87981534	-	0	NA	Intergenic	AluYc|SINE|Alu	-375411	NM_015239	23287	Hs.719980	NM_015239	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
chrX.53111558.-	chrX	53111558	53111559	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-16	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.242447250.-	chr2	242447250	242447251	-	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	-525	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr1.4282116.+	chr1	4282116	4282117	+	0	NA	Intergenic	AluSg7|SINE|Alu	-189995	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	miscRNA
chr22.29760750.-	chr22	29760750	29760751	-	0	NA	"intron (NM_001127, intron 2 of 22)"	AluSx|SINE|Alu	-23822	NM_001127	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	"adaptor-related protein complex 1, beta 1 subunit"	protein-coding
chr3.102974059.-	chr3	102974059	102974060	-	0	NA	Intergenic	SVA_D|Other|Other	-820200	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr21.47343990.-	chr21	47343990	47343991	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57673	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr13.59108601.-	chr13	59108601	59108602	-	0	NA	Intergenic	AluY|SINE|Alu	-902812	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr20.47538415.+	chr20	47538415	47538416	+	0	NA	"5' UTR (NM_006420, exon 1 of 39)"	"5' UTR (NM_006420, exon 1 of 39)"	140	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr1.242178352.+	chr1	242178352	242178353	+	0	NA	Intergenic	AluY|SINE|Alu	-15967	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr21.32710138.-	chr21	32710138	32710139	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluSz|SINE|Alu	-221152	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr4.41386481.+	chr4	41386481	41386482	+	0	NA	"intron (NM_001112717, intron 1 of 25)"	AluY|SINE|Alu	23677	NM_001112718	22998	Hs.335163	NM_001112717	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
chr8.48100919.-	chr8	48100919	48100920	-	0	NA	promoter-TSS (NR_037168)	promoter-TSS (NR_037168)	11	NR_037168	100287846	Hs.21550	NR_037168		LOC100287846	-	patched 1 pseudogene	pseudo
chr7.61969338.+	chr7	61969338	61969339	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795096	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr9.11184.-	chr9	11184	11185	-	0	NA	promoter-TSS (NR_051986)	promoter-TSS (NR_051986)	803	NR_051986	100287596	Hs.719844	NR_051986		DDX11L5	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5	pseudo
chr1.167424979.-	chr1	167424979	167424980	-	0	NA	"intron (NM_000734, intron 1 of 7)"	CpG	-62868	NM_198053	919	Hs.156445	NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|T3Z|TCRZ	CD247 molecule	protein-coding
chr12.38493558.+	chr12	38493558	38493559	+	0	NA	Intergenic	Intergenic	-216999	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr2.71357890.+	chr2	71357890	71357891	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	446	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr19.2492336.-	chr19	2492336	2492337	-	0	NA	Intergenic	AluSz|SINE|Alu	-16213	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr2.106682226.+	chr2	106682226	106682227	+	0	NA	"exon (NM_032411, exon 1 of 4)"	"exon (NM_032411, exon 1 of 4)"	113	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr12.57177828.-	chr12	57177828	57177829	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20720	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr2.202092540.-	chr2	202092540	202092541	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5626	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr1.212371354.-	chr1	212371354	212371355	-	0	NA	Intergenic	AluY|SINE|Alu	87525	NM_006243	5525	Hs.744012	NM_001199756	ENSG00000066027	PPP2R5A	B56A|PR61A	"protein phosphatase 2, regulatory subunit B', alpha"	protein-coding
chr5.128197007.+	chr5	128197007	128197008	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104203	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr1.113336812.+	chr1	113336812	113336813	+	0	NA	Intergenic	MER70B|LTR|ERVL	73623	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr3.149374847.-	chr3	149374847	149374848	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-965	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr12.124873579.-	chr12	124873579	124873580	-	0	NA	"intron (NM_001206654, intron 18 of 47)"	CpG	-99869	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	FAM101A	-	"family with sequence similarity 101, member A"	protein-coding
chr4.955039.+	chr4	955039	955040	+	0	NA	"intron (NM_001347, intron 21 of 22)"	"intron (NM_001347, intron 21 of 22)"	12309	NM_001347	1609	Hs.584858	NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	"diacylglycerol kinase, theta 110kDa"	protein-coding
chr19.45678474.-	chr19	45678474	45678475	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3027	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr9.21968307.+	chr9	21968307	21968308	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1169	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr2.129076108.+	chr2	129076108	129076109	+	0	NA	promoter-TSS (NM_004807)	promoter-TSS (NM_004807)	63	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr6.159416823.-	chr6	159416823	159416824	-	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	-4375	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr3.88595860.+	chr3	88595860	88595861	+	0	NA	Intergenic	AluSc8|SINE|Alu	-396844	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr8.26486361.+	chr8	26486361	26486362	+	0	NA	"intron (NM_001244604, intron 7 of 13)"	"intron (NM_001244604, intron 7 of 13)"	50440	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr16.77246835.+	chr16	77246835	77246836	+	0	NA	"3' UTR (NM_001129979, exon 11 of 11)"	"3' UTR (NM_001129979, exon 11 of 11)"	13486	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr1.161879467.-	chr1	161879467	161879468	-	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	-114177	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr16.89707693.+	chr16	89707693	89707694	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-16459	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr3.129048077.+	chr3	129048077	129048078	+	0	NA	Intergenic	AluY|SINE|Alu	-12957	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr22.19525200.+	chr22	19525200	19525201	+	0	NA	Intergenic	AluY|SINE|Alu	-12340	NM_003277	7122	Hs.505337	NM_001130861	ENSG00000184113	CLDN5	AWAL|BEC1|CPETRL1|TMVCF	claudin 5	protein-coding
chr11.65495539.-	chr11	65495539	65495540	-	0	NA	Intergenic	Intergenic	7130	NM_032193	84153	Hs.718438	NM_032193	ENSG00000172922	RNASEH2C	AGS3|AYP1	"ribonuclease H2, subunit C"	protein-coding
chr5.86907799.-	chr5	86907799	86907800	-	0	NA	Intergenic	AluY|SINE|Alu	198949	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr17.21825571.-	chr17	21825571	21825572	-	0	NA	"non-coding (NR_028336, exon 1 of 2)"	"non-coding (NR_028336, exon 1 of 2)"	-201	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr10.101292631.+	chr10	101292631	101292632	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-59	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr12.57177866.+	chr12	57177866	57177867	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20758	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr11.6429157.+	chr11	6429157	6429158	+	0	NA	"intron (NM_001257324, intron 1 of 7)"	AluYb8|SINE|Alu	-2266	NM_001257320	322	Hs.372840	NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	protein-coding
chr22.18764011.+	chr22	18764011	18764012	+	0	NA	"intron (NR_003267, intron 8 of 12)"	AluY|SINE|Alu	15463	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
chr2.208031302.+	chr2	208031302	208031303	+	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	278	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chrX.130461471.+	chrX	130461471	130461472	+	0	NA	Intergenic	SVA_D|Other|Other	-38068	NM_001555	3547	Hs.22111	NM_001170961	ENSG00000147255	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	"immunoglobulin superfamily, member 1"	protein-coding
chr15.37172825.+	chr15	37172825	37172826	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5909	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr10.122148823.+	chr10	122148823	122148824	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67643	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr20.5213540.+	chr20	5213540	5213541	+	0	NA	Intergenic	AluJr4|SINE|Alu	81475	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr14.83280574.+	chr14	83280574	83280575	+	0	NA	Intergenic	SVA_D|Other|Other	-1280369	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr2.241780284.+	chr2	241780284	241780285	+	0	NA	Intergenic	Intergenic	-20559	NM_001244008	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr20.62295558.+	chr20	62295558	62295559	+	0	NA	"intron (NR_037882, intron 6 of 37)"	"intron (NR_037882, intron 6 of 37)"	6395	NM_032957	51750	Hs.434878	NM_016434	ENSG00000258366	RTEL1	C20orf41|NHL|RTEL|bK3184A7.3	regulator of telomere elongation helicase 1	protein-coding
chr17.2726588.+	chr17	2726588	2726589	+	0	NA	"intron (NM_015085, intron 2 of 24)"	"intron (NM_015085, intron 2 of 24)"	26856	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr2.240361469.+	chr2	240361469	240361470	+	0	NA	Intergenic	Intergenic	-38826	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr16.1228087.+	chr16	1228087	1228088	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24846	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr1.239683255.-	chr1	239683255	239683256	-	0	NA	Intergenic	AluY|SINE|Alu	109118	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	"cholinergic receptor, muscarinic 3"	protein-coding
chr1.156527499.-	chr1	156527499	156527500	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14897	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr6.21206310.-	chr6	21206310	21206311	-	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	387662	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr12.106606570.+	chr12	106606570	106606571	+	0	NA	Intergenic	L1PA7|LINE|L1	35143	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr18.44780958.-	chr18	44780958	44780959	-	0	NA	Intergenic	Intergenic	78213	NM_016097	51124	Hs.130917	NM_016097	ENSG00000134049	IER3IP1	MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
chr1.65532959.-	chr1	65532959	65532960	-	0	NA	Intergenic	CpG	8768	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr2.111367753.+	chr2	111367753	111367754	+	0	NA	Intergenic	Intergenic	-31444	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr2.85788581.-	chr2	85788581	85788582	-	0	NA	promoter-TSS (NM_001142269)	promoter-TSS (NM_001142269)	-76	NM_001142269	2677	Hs.77719	NM_000821		GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
chr7.104040184.-	chr7	104040184	104040185	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71080	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr16.67596875.+	chr16	67596875	67596876	+	0	NA	"intron (NM_006565, intron 1 of 11)"	CpG	565	NM_001191022	10664	Hs.368367	NM_001191022	ENSG00000102974	CTCF	-	CCCTC-binding factor (zinc finger protein)	protein-coding
chr1.178011489.+	chr1	178011489	178011490	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4347	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr11.70068428.+	chr11	70068428	70068429	+	0	NA	Intergenic	AluSc8|SINE|Alu	19159	NM_003824	8772	Hs.86131	NM_003824	ENSG00000168040	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
chr20.49308006.+	chr20	49308006	49308007	+	0	NA	Intergenic	Intergenic	-40075	NM_032521	84612	Hs.589848	NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 partitioning defective 6 homolog beta (C. elegans)	protein-coding
chr9.136006400.+	chr9	136006400	136006401	+	0	NA	"exon (NM_001271774, exon 1 of 18)"	"exon (NM_001271774, exon 1 of 18)"	144	NM_001271774	5900	Hs.106185	NM_001042368	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
chr11.129149431.+	chr11	129149431	129149432	+	0	NA	Intergenic	CpG	-87338	NM_001142685	9743	Hs.440379	NM_001142685	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
chr1.109995554.+	chr1	109995554	109995555	+	0	NA	Intergenic	AluY|SINE|Alu	-13546	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr7.1542228.+	chr7	1542228	1542229	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1790	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chrX.122993611.-	chrX	122993611	122993612	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	51	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr2.121244118.+	chr2	121244118	121244119	+	0	NA	Intergenic	Intergenic	-20193	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr16.53232341.+	chr16	53232341	53232342	+	0	NA	"intron (NM_025134, intron 2 of 38)"	AluSc8|SINE|Alu	143396	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr13.20387525.+	chr13	20387525	20387526	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30366	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr19.835079.+	chr19	835079	835080	+	0	NA	Intergenic	Intergenic	-5906	NM_002777	5657	Hs.928	NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
chr4.188471128.-	chr4	188471128	188471129	-	0	NA	Intergenic	AluSg|SINE|Alu	44361	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr1.178011438.+	chr1	178011438	178011439	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4296	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr14.101892658.+	chr14	101892658	101892659	+	0	NA	Intergenic	AluY|SINE|Alu	129355	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr16.70432268.+	chr16	70432268	70432269	+	0	NA	"exon (NM_006927, exon 2 of 7)"	"exon (NM_006927, exon 2 of 7)"	40723	NM_006927	6483	Hs.368611	NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	"ST3 beta-galactoside alpha-2,3-sialyltransferase 2"	protein-coding
chr1.230524322.+	chr1	230524322	230524323	+	0	NA	"intron (NM_001258311, intron 1 of 6)"	AluY|SINE|Alu	37352	NM_001258311	79605	Hs.520463	NM_001258311		PGBD5	-	piggyBac transposable element derived 5	protein-coding
chr5.179681956.-	chr5	179681956	179681957	-	0	NA	"intron (NM_139068, intron 5 of 11)"	AluY|SINE|Alu	-37115	NM_139070	5601	Hs.484371	NM_001135044	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
chr19.36762814.+	chr19	36762814	36762815	+	0	NA	Intergenic	SST1|Satellite|centr	-39431	NR_029389	100134317	Hs.729610	NR_029389		LOC100134317	-	uncharacterized LOC100134317	miscRNA
chr1.9517603.+	chr1	9517603	9517604	+	0	NA	Intergenic	AluJb|SINE|Alu	-81925	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr1.17298985.-	chr1	17298985	17298986	-	0	NA	"3' UTR (NM_014675, exon 37 of 37)"	"3' UTR (NM_014675, exon 37 of 37)"	-8188	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr14.61123695.-	chr14	61123695	61123696	-	0	NA	Intergenic	CpG	7540	NM_005982	6495	Hs.633506	NM_005982		SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
chr19.56904750.+	chr19	56904750	56904751	+	0	NA	promoter-TSS (NR_037161)	promoter-TSS (NR_037161)	139	NM_144690	147948	Hs.244391	NM_144690	ENSG00000018869	ZNF582	-	zinc finger protein 582	protein-coding
chr2.70780780.-	chr2	70780780	70780781	-	0	NA	"intron (NM_001099691, intron 1 of 5)"	CpG	-367	NM_003236	7039	Hs.628298	NM_001099691	ENSG00000163235	TGFA	TFGA	"transforming growth factor, alpha"	protein-coding
chr19.3219071.-	chr19	3219071	3219072	-	0	NA	Intergenic	AluY|SINE|Alu	5630	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr1.121484737.-	chr1	121484737	121484738	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-223827	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chrX.152890823.+	chrX	152890823	152890824	+	0	NA	Intergenic	Intergenic	-17074	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr15.86379252.+	chr15	86379252	86379253	+	0	NA	Intergenic	AluSx4|SINE|Alu	-41063	NM_022480	64410	Hs.498371	NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch-like family member 25	protein-coding
chr13.31914217.+	chr13	31914217	31914218	+	0	NA	Intergenic	LTR12C|LTR|ERV1	140105	NM_194318	145173	Hs.13205	NM_194318	ENSG00000187676	B3GALTL	B3GLCT|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	"beta 1,3-galactosyltransferase-like"	protein-coding
chr7.936483.+	chr7	936483	936484	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20292	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr10.43563213.-	chr10	43563213	43563214	-	0	NA	Intergenic	Intergenic	9304	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chrM.16407.-	chrM	16407	16408	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.74820371.-	chr17	74820371	74820372	-	0	NA	Intergenic	Intergenic	44427	NM_001199172	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr8.27127630.+	chr8	27127630	27127631	+	0	NA	Intergenic	AluY|SINE|Alu	-11727	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr5.175676706.+	chr5	175676706	175676707	+	0	NA	"intron (NM_198567, intron 1 of 8)"	AluY|SINE|Alu	11336	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr12.133141208.-	chr12	133141208	133141209	-	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	-45829	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr6.55775402.+	chr6	55775402	55775403	+	0	NA	Intergenic	SVA_D|Other|Other	-35027	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr17.7246097.-	chr17	7246097	7246098	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6249	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr11.64034559.-	chr11	64034559	64034560	-	0	NA	"intron (NM_001184883, intron 27 of 28)"	AluSx1|SINE|Alu	-15564	NM_001184883	5331	Hs.523761	NM_000932		PLCB3	-	"phospholipase C, beta 3 (phosphatidylinositol-specific)"	protein-coding
chr19.39827637.+	chr19	39827637	39827638	+	0	NA	promoter-TSS (NM_004877)	promoter-TSS (NM_004877)	-911	NM_004877	9535	Hs.5210	NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	"glia maturation factor, gamma"	protein-coding
chr1.32679298.-	chr1	32679298	32679299	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4603	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr2.213402703.+	chr2	213402703	213402704	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	649	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr9.137722667.-	chr9	137722667	137722668	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18548	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr19.41641930.+	chr19	41641930	41641931	+	0	NA	Intergenic	CpG	21577	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr21.47343959.+	chr21	47343959	47343960	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-57704	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr7.36192832.-	chr7	36192832	36192833	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	4	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr13.48030592.-	chr13	48030592	48030593	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544870	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr6.46742388.-	chr6	46742388	46742389	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18706	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr12.104506922.+	chr12	104506922	104506923	+	0	NA	Intergenic	AluY|SINE|Alu	25118	NM_006166	4801	Hs.84928	NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	"nuclear transcription factor Y, beta"	protein-coding
chr12.105375637.-	chr12	105375637	105375638	-	0	NA	Intergenic	AluSx3|SINE|Alu	4461	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr18.70912373.+	chr18	70912373	70912374	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19360	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr11.113666046.+	chr11	113666046	113666047	+	0	NA	Intergenic	AluSx|SINE|Alu	15528	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr2.55960184.+	chr2	55960184	55960185	+	0	NA	Intergenic	Intergenic	-39139	NM_033109	87178	Hs.388733	NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
chr19.58963031.-	chr19	58963031	58963032	-	0	NA	promoter-TSS (NM_207395)	promoter-TSS (NM_207395)	-60	NM_207395	388569	Hs.186970	NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
chr3.36494733.-	chr3	36494733	36494734	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72636	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr14.68162520.+	chr14	68162520	68162521	+	0	NA	promoter-TSS (NM_016026)	promoter-TSS (NM_016026)	-10	NM_001252650	51109	Hs.719925	NM_001252650	ENSG00000072042	RDH11	ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|SCALD|SDR7C1	retinol dehydrogenase 11 (all-trans/9-cis/11-cis)	protein-coding
chr6.119182181.+	chr6	119182181	119182182	+	0	NA	"intron (NM_017696, intron 6 of 11)"	MER52A|LTR|ERV1	-33060	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	protein-coding
chr18.77806699.+	chr18	77806699	77806700	+	0	NA	"3' UTR (NM_001171967, exon 6 of 6)"	"3' UTR (NM_001171967, exon 6 of 6)"	12353	NM_024805	79863	Hs.744581	NM_001171967		RBFA	C18orf22|HsT169	ribosome binding factor A (putative)	protein-coding
chr20.29612130.-	chr20	29612130	29612131	-	0	NA	"intron (NR_003579, intron 1 of 7)"	CpG	-251	NR_003579	284802	Hs.653099	NR_003579	ENSG00000149531	FRG1B	C20orf80|bA348I14.2	"FSHD region gene 1 family, member B"	pseudo
chrX.133328809.+	chrX	133328809	133328810	+	0	NA	Intergenic	AluSg|SINE|Alu	-24501	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr10.134411414.-	chr10	134411414	134411415	-	0	NA	"intron (NM_005539, intron 1 of 15)"	CpG	-60061	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr7.2933104.+	chr7	2933104	2933105	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49145	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr21.34662342.-	chr21	34662342	34662343	-	0	NA	"intron (NM_000628, intron 6 of 6)"	AluY|SINE|Alu	-23677	NM_000628	3588	Hs.654593	NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2	"interleukin 10 receptor, beta"	protein-coding
chr22.24563079.+	chr22	24563079	24563080	+	0	NA	"exon (NM_001201429, exon 31 of 36)"	"exon (NM_001201429, exon 31 of 36)"	-14365	NM_019601	56241	Hs.131819	NM_019601	ENSG00000099994	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
chr22.38166163.+	chr22	38166163	38166164	+	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	23922	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr11.114967419.+	chr11	114967419	114967420	+	0	NA	Intergenic	AluSz|SINE|Alu	407822	NM_014333	23705	Hs.370510	NM_001098517	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
chr1.899317.-	chr1	899317	899318	-	0	NA	"exon (NM_198317, exon 9 of 12)"	"exon (NM_198317, exon 9 of 12)"	2560	NM_001160184	84069	Hs.528691	NM_001160184	ENSG00000187583	PLEKHN1	RP11-54O7.7	"pleckstrin homology domain containing, family N member 1"	protein-coding
chr7.936460.-	chr7	936460	936461	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20269	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr11.92637207.+	chr11	92637207	92637208	+	0	NA	Intergenic	AluY|SINE|Alu	-65582	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr16.22943706.+	chr16	22943706	22943707	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	117846	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chrX.69654682.+	chrX	69654682	69654683	+	0	NA	Intergenic	Intergenic	-10023	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr20.44044791.-	chr20	44044791	44044792	-	0	NA	promoter-TSS (NM_015937)	promoter-TSS (NM_015937)	-84	NR_047695	51604	Hs.437388	NM_001184728	ENSG00000124155	PIGT	NDAP	"phosphatidylinositol glycan anchor biosynthesis, class T"	protein-coding
chr17.7561697.-	chr17	7561697	7561698	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7443	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr12.133115602.-	chr12	133115602	133115603	-	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	-48445	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr3.29051406.+	chr3	29051406	29051407	+	0	NA	Intergenic	AluSc8|SINE|Alu	-271397	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr15.90792637.+	chr15	90792637	90792638	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-127	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr17.7011289.-	chr17	7011289	7011290	-	0	NA	"intron (NM_001201352, intron 4 of 8)"	"intron (NM_001201352, intron 4 of 8)"	-6340	NM_080914	433	Hs.654440	NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
chr15.90327999.-	chr15	90327999	90328000	-	0	NA	TTS (NM_001150)	TTS (NM_001150)	-8410	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr2.232277196.-	chr2	232277196	232277197	-	0	NA	Intergenic	Intergenic	-16861	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr1.9517580.+	chr1	9517580	9517581	+	0	NA	Intergenic	AluJb|SINE|Alu	-81948	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr7.1116555.-	chr7	1116555	1116556	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	9888	NM_001505	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr1.46326313.-	chr1	46326313	46326314	-	0	NA	"intron (NM_015112, intron 3 of 28)"	AluSq2|SINE|Alu	-57028	NM_015112	23139	Hs.319481	NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
chr20.60803737.-	chr20	60803737	60803738	-	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	8414	NM_007232	11255	Hs.251399	NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
chr7.158790522.-	chr7	158790522	158790523	-	0	NA	Intergenic	Intergenic	10523	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr2.198028893.-	chr2	198028893	198028894	-	0	NA	"intron (NM_153697, intron 2 of 9)"	"intron (NM_153697, intron 2 of 9)"	-146628	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr15.41539495.-	chr15	41539495	41539496	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16058	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr16.1661274.-	chr16	1661274	1661275	-	0	NA	"intron (NM_014714, intron 1 of 30)"	CpG-8601	-835	NM_014714	9742	Hs.389438	NM_014714	ENSG00000187535	IFT140	MZSDS|WDTC2|c305C8.4|c380F5.1|gs114	intraflagellar transport 140 homolog (Chlamydomonas)	protein-coding
chr16.15528772.-	chr16	15528772	15528773	-	0	NA	"intron (NM_033201, intron 1 of 5)"	CpG	-447	NM_033201	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
chr7.158299506.+	chr7	158299506	158299507	+	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	25999	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr1.2887348.-	chr1	2887348	2887349	-	0	NA	Intergenic	Intergenic	50698	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr2.230579943.+	chr2	230579943	230579944	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-657	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr19.34538942.+	chr19	34538942	34538943	+	0	NA	Intergenic	AluYc|SINE|Alu	-124410	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr13.113443575.-	chr13	113443575	113443576	-	0	NA	"intron (NM_032189, intron 2 of 28)"	"intron (NM_032189, intron 2 of 28)"	-98932	NM_032189	23250	Hs.29189	NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS	"ATPase, class VI, type 11A"	protein-coding
chr1.179051069.-	chr1	179051069	179051070	-	0	NA	promoter-TSS (NM_022371)	promoter-TSS (NM_022371)	43	NM_022371	64222	Hs.584957	NM_022371		TOR3A	ADIR|ADIR2	"torsin family 3, member A"	protein-coding
chr1.54966479.+	chr1	54966479	54966480	+	0	NA	Intergenic	AluSq|SINE|Alu	-47328	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr15.41613118.+	chr15	41613118	41613119	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11701	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr17.27717835.+	chr17	27717835	27717836	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-108	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr6.159416876.+	chr6	159416876	159416877	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4322	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr12.58059371.+	chr12	58059371	58059372	+	0	NA	Intergenic	SVA_A|Other|Other	-28367	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr19.2307937.-	chr19	2307937	2307938	-	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	-219	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr9.139698994.-	chr9	139698994	139698995	-	0	NA	"non-coding (NR_024580, exon 5 of 5)"	"non-coding (NR_024580, exon 5 of 5)"	3380	NM_001173988	55684	Hs.370555	NM_001173988	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	"RAB, member RAS oncogene family-like 6"	protein-coding
chr13.31024080.-	chr13	31024080	31024081	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16001	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr2.68031699.-	chr2	68031699	68031700	-	0	NA	Intergenic	AluY|SINE|Alu	-258460	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr9.8857427.-	chr9	8857427	8857428	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123481	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr14.101693723.+	chr14	101693723	101693724	+	0	NA	Intergenic	Intergenic	157475	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr12.52680062.+	chr12	52680062	52680063	+	0	NA	"exon (NM_002281, exon 9 of 9)"	"exon (NM_002281, exon 9 of 9)"	5237	NM_002281	3887	Hs.658118	NM_002281	ENSG00000205426	KRT81	HB1|Hb-1|KRTHB1|MLN137|ghHkb1|hHAKB2-1	keratin 81	protein-coding
chr6.168397428.-	chr6	168397428	168397429	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	19809	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr18.13095717.-	chr18	13095717	13095718	-	0	NA	"intron (NM_032142, intron 35 of 44)"	"intron (NM_032142, intron 35 of 44)"	-104356	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr12.133328252.-	chr12	133328252	133328253	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10199	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr13.99083517.-	chr13	99083517	99083518	-	0	NA	"exon (NM_005766, exon 18 of 27)"	"exon (NM_005766, exon 18 of 27)"	-90824	NM_003576	8428	Hs.508514	NM_001032296	ENSG00000102572	STK24	MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
chrX.53123340.+	chrX	53123340	53123341	+	0	NA	Intergenic	CpG	11798	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr8.144512825.-	chr8	144512825	144512826	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	223	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chrX.118871973.+	chrX	118871973	118871974	+	0	NA	Intergenic	AluYc|SINE|Alu	-20603	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr1.151573464.-	chr1	151573464	151573465	-	0	NA	Intergenic	SVA_E|Other|Other	11198	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr17.78978002.+	chr17	78978002	78978003	+	0	NA	Intergenic	CpG	12361	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr18.41408433.-	chr18	41408433	41408434	-	0	NA	Intergenic	AluSx3|SINE|Alu	550818	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr1.207669635.-	chr1	207669635	207669636	-	0	NA	"exon (NM_000573, exon 1 of 39)"	"exon (NM_000573, exon 1 of 39)"	-162	NM_000573	1378	Hs.334019	NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement component (3b/4b) receptor 1 (Knops blood group)	protein-coding
chr1.68692883.-	chr1	68692883	68692884	-	0	NA	"intron (NM_024911, intron 1 of 11)"	AluSx1|SINE|Alu	-5346	NM_001002292	79971	Hs.647659	NM_001002292	ENSG00000116729	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless homolog (Drosophila)	protein-coding
chr11.1122306.+	chr11	1122306	1122307	+	0	NA	Intergenic	Intergenic	47431	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chrX.46794159.+	chrX	46794159	46794160	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22291	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr19.267148.+	chr19	267148	267149	+	0	NA	Intergenic	CpG	24021	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr2.4156363.+	chr2	4156363	4156364	+	0	NA	Intergenic	CpG	-134741	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr8.99151364.+	chr8	99151364	99151365	+	0	NA	"intron (NM_001145860, intron 9 of 15)"	AluSx1|SINE|Alu	21296	NM_015029	10940	Hs.252828	NM_001145860	ENSG00000104356	POP1	-	"processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)"	protein-coding
chr19.39094212.+	chr19	39094212	39094213	+	0	NA	"intron (NM_001042600, intron 19 of 30)"	AluJb|SINE|Alu	14431	NM_007181	11184	Hs.95424	NM_001042600	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
chr2.71559437.+	chr2	71559437	71559438	+	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	552	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr14.22030002.+	chr14	22030002	22030003	+	0	NA	Intergenic	AluSx3|SINE|Alu	8873	NM_001005465	26533	Hs.554581	NM_001005465	ENSG00000169208	OR10G3	OR14-40	"olfactory receptor, family 10, subfamily G, member 3"	protein-coding
chr9.25678018.+	chr9	25678018	25678019	+	0	NA	"exon (NM_001004125, exon 1 of 1)"	"exon (NM_001004125, exon 1 of 1)"	838	NM_001004125	286319	Hs.606014	NM_001004125	ENSG00000198680	TUSC1	TSG-9|TSG9	tumor suppressor candidate 1	protein-coding
chr1.32122097.-	chr1	32122097	32122098	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11259	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr16.77768260.+	chr16	77768260	77768261	+	0	NA	"intron (NM_001243661, intron 2 of 2)"	AluY|SINE|Alu	11871	NM_001243657	283927	Hs.282665	NM_001105663	ENSG00000140876	NUDT7	-	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding
chr19.56154402.-	chr19	56154402	56154403	-	0	NA	promoter-TSS (NM_016535)	promoter-TSS (NM_016535)	584	NM_016535	51545	Hs.20768	NM_016535	ENSG00000171425	ZNF581	-	zinc finger protein 581	protein-coding
chr14.78062653.-	chr14	78062653	78062654	-	0	NA	"intron (NM_004863, intron 2 of 11)"	AluY|SINE|Alu	-20457	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	"serine palmitoyltransferase, long chain base subunit 2"	protein-coding
chr19.3068355.-	chr19	3068355	3068356	-	0	NA	Intergenic	Intergenic	5391	NM_198969	166	Hs.515053	NM_001130	ENSG00000104964	AES	AES-1|AES-2|ESP1|GRG|GRG5|TLE5	amino-terminal enhancer of split	protein-coding
chr5.112257255.+	chr5	112257255	112257256	+	0	NA	"intron (NM_005669, intron 1 of 4)"	CpG	776	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr6.170055361.+	chr6	170055361	170055362	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46798	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr4.114652861.+	chr4	114652861	114652862	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30222	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr15.83365845.-	chr15	83365845	83365846	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12790	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr6.21897094.-	chr6	21897094	21897095	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230419	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr7.1001908.-	chr7	1001908	1001909	-	0	NA	Intergenic	Intergenic	7619	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr10.133869280.+	chr10	133869280	133869281	+	0	NA	Intergenic	Intergenic	-49033	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chrX.132399709.+	chrX	132399709	132399710	+	0	NA	Intergenic	Intergenic	-47333	NM_016521	51270	Hs.142908	NM_016521	ENSG00000183434	TFDP3	CT30|DP4|HCA661	"transcription factor Dp family, member 3"	protein-coding
chr19.50670109.+	chr19	50670109	50670110	+	0	NA	Intergenic	AluSg|SINE|Alu	-3571	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chrX.58310213.-	chrX	58310213	58310214	-	0	NA	Intergenic	GSATX|Satellite|centr	373146	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	"zinc finger, X-linked, duplicated A"	protein-coding
chr17.67639024.+	chr17	67639024	67639025	+	0	NA	Intergenic	AluY|SINE|Alu	228186	NM_002758	5608	Hs.463978	NM_002758		MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chr7.139162662.+	chr7	139162662	139162663	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5795	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr10.76993941.+	chr10	76993941	76993942	+	0	NA	"exon (NM_144589, exon 7 of 7)"	"exon (NM_144589, exon 7 of 7)"	1829	NM_144589	118881	Hs.355333	NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
chr6.114067425.-	chr6	114067425	114067426	-	0	NA	Intergenic	AluY|SINE|Alu	111102	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr7.102089913.-	chr7	102089913	102089914	-	0	NA	"3' UTR (NM_001271818, exon 4 of 4)"	"3' UTR (NM_001271818, exon 4 of 4)"	-15408	NM_017621	54784	Hs.658598	NM_017621	ENSG00000160993	ALKBH4	ABH4	"alkB, alkylation repair homolog 4 (E. coli)"	protein-coding
chr14.65007388.-	chr14	65007388	65007389	-	0	NA	"5' UTR (NM_021979, exon 1 of 1)"	"5' UTR (NM_021979, exon 1 of 1)"	-202	NM_021979	3306	Hs.432648	NM_021979	ENSG00000126803	HSPA2	HSP70-2|HSP70-3	heat shock 70kDa protein 2	protein-coding
chr5.14460430.-	chr5	14460430	14460431	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121461	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr8.143808713.-	chr8	143808713	143808714	-	0	NA	promoter-TSS (NM_016647)	promoter-TSS (NM_016647)	-92	NM_016647	51337	Hs.368402	NM_016647	ENSG00000130193	THEM6	C8orf55|DSCD75	thioesterase superfamily member 6	protein-coding
chr2.83587591.+	chr2	83587591	83587592	+	0	NA	Intergenic	AluY|SINE|Alu	503664	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr14.23517056.-	chr14	23517056	23517057	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5680	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr1.113437426.-	chr1	113437426	113437427	-	0	NA	Intergenic	LTR12C|LTR|ERV1	28546	NR_002796	246182	Hs.647691	NR_002796		AKR7A2P1	AFARP1	"aldo-keto reductase family 7, member A2 pseudogene 1"	pseudo
chr19.19594702.-	chr19	19594702	19594703	-	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	-31767	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr15.76627345.-	chr15	76627345	76627346	-	0	NA	Intergenic	AluSg|SINE|Alu	1802	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr1.65532967.+	chr1	65532967	65532968	+	0	NA	Intergenic	CpG	-8776	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr3.121553763.-	chr3	121553763	121553764	-	0	NA	promoter-TSS (NM_018456)	promoter-TSS (NM_018456)	-163	NM_001023570	9657	Hs.604110	NM_001023570	ENSG00000173226	IQCB1	NPHP5|PIQ|SLSN5	IQ motif containing B1	protein-coding
chr3.188708053.+	chr3	188708053	188708054	+	0	NA	Intergenic	Intergenic	-181710	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr2.48010420.-	chr2	48010420	48010421	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-199	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr15.100080040.+	chr15	100080040	100080041	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26093	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr6.35497044.-	chr6	35497044	35497045	-	0	NA	Intergenic	AluSp|SINE|Alu	16397	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
chr3.1900256.-	chr3	1900256	1900257	-	0	NA	Intergenic	AluSp|SINE|Alu	240294	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr19.18075336.-	chr19	18075336	18075337	-	0	NA	"intron (NM_002248, intron 2 of 10)"	"intron (NM_002248, intron 2 of 10)"	-13225	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr6.57322600.-	chr6	57322600	57322601	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140178	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr14.36549601.-	chr14	36549601	36549602	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9968	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr17.78234139.-	chr17	78234139	78234140	-	0	NA	promoter-TSS (NM_020954)	promoter-TSS (NM_020954)	521	NM_001256071	57674	Hs.743310	NM_001256071	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
chr12.79439108.-	chr12	79439108	79439109	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	325	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr2.92028181.-	chr2	92028181	92028182	-	0	NA	Intergenic	CpG	-64813	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
chr19.50614634.-	chr19	50614634	50614635	-	0	NA	TTS (NR_024214).7	TTS (NR_024214).7	-1111	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr11.92637317.-	chr11	92637317	92637318	-	0	NA	Intergenic	AluY|SINE|Alu	65472	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr9.77401548.+	chr9	77401548	77401549	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100715	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr14.101679059.-	chr14	101679059	101679060	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142811	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr11.31560733.+	chr11	31560733	31560734	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29436	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chrX.68956260.+	chrX	68956260	68956261	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120349	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr11.5623432.-	chr11	5623432	5623433	-	0	NA	"intron (NM_001198645, intron 1 of 5)"	AluY|SINE|Alu	-5567	NM_001003818	117854	Hs.729048	NM_001003818	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
chr12.100804241.-	chr12	100804241	100804242	-	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	-53384	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr11.47284134.-	chr11	47284134	47284135	-	0	NA	"intron (NM_001130102, intron 6 of 8)"	AluSz|SINE|Alu	-4666	NM_005693	10062	Hs.438863	NM_001130101	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	"nuclear receptor subfamily 1, group H, member 3"	protein-coding
chrX.47215640.-	chrX	47215640	47215641	-	0	NA	Intergenic	AluY|SINE|Alu	14359	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr10.120946152.+	chr10	120946152	120946153	+	0	NA	Intergenic	AluY|SINE|Alu	-7807	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr7.158671009.-	chr7	158671009	158671010	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21740	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr14.104852690.+	chr14	104852690	104852691	+	0	NA	Intergenic	Intergenic	-193366	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chr13.96343468.+	chr13	96343468	96343469	+	0	NA	"intron (NM_006260, intron 1 of 11)"	SVA_D|Other|Other	14075	NM_006260	5611	Hs.59214	NM_006260		DNAJC3	ERdj6|HP58|P58|P58IPK|PRKRI	"DnaJ (Hsp40) homolog, subfamily C, member 3"	protein-coding
chr2.36958605.-	chr2	36958605	36958606	-	0	NA	"intron (NM_053276, intron 3 of 15)"	AluSc|SINE|Alu	-34772	NM_001177969	5212	Hs.137415	NM_001177969	ENSG00000205221	VIT	-	vitrin	protein-coding
chr22.30636969.-	chr22	30636969	30636970	-	0	NA	"3' UTR (NM_001257135, exon 2 of 2)"	"3' UTR (NM_001257135, exon 2 of 2)"	-5871	NM_001257135	3976	Hs.2250	NM_001257135	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
chr14.31676480.-	chr14	31676480	31676481	-	0	NA	"5' UTR (NM_015382, exon 1 of 43)"	"5' UTR (NM_015382, exon 1 of 43)"	-209	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	-	HECT domain containing E3 ubiquitin protein ligase 1	protein-coding
chr9.133788057.+	chr9	133788057	133788058	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18832	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr3.20070760.-	chr3	20070760	20070761	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10764	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr4.42659042.+	chr4	42659042	42659043	+	0	NA	promoter-TSS (NM_001105529)	promoter-TSS (NM_001105529)	80	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr22.51010995.+	chr22	51010995	51010996	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5511	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr7.1570467.+	chr7	1570467	1570468	+	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	99	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr13.69098186.+	chr13	69098186	69098187	+	0	NA	Intergenic	LTR12C|LTR|ERV1	361271	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr7.1286171.-	chr7	1286171	1286172	-	0	NA	Intergenic	CpG	-13517	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr7.627667.+	chr7	627667	627668	+	0	NA	"intron (NM_002735, intron 7 of 10)"	"intron (NM_002735, intron 7 of 10)"	67639	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr19.11060483.+	chr19	11060483	11060484	+	0	NA	Intergenic	AluY|SINE|Alu	-11115	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr9.10786994.+	chr9	10786994	10786995	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174271	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.150812718.+	chr7	150812718	150812719	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28892	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr13.25618832.+	chr13	25618832	25618833	+	0	NA	Intergenic	AluY|SINE|Alu	-51444	NM_030979	5042	Hs.458280	NM_030979		PABPC3	PABP3|PABPL3|tPABP	"poly(A) binding protein, cytoplasmic 3"	protein-coding
chr15.83365899.-	chr15	83365899	83365900	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12736	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr2.44294814.-	chr2	44294814	44294815	-	0	NA	Intergenic	SVA_D|Other|Other	71670	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr2.10916506.-	chr2	10916506	10916507	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36454	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr8.133680830.+	chr8	133680830	133680831	+	0	NA	"intron (NR_073525, intron 1 of 12)"	AluY|SINE|Alu	7033	NR_073525	23639	Hs.591865	NM_012472	ENSG00000129295	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
chr2.217746804.+	chr2	217746804	217746805	+	0	NA	Intergenic	AluSz|SINE|Alu	-22022	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr16.537693.-	chr16	537693	537694	-	0	NA	"intron (NM_001142272, intron 2 of 11)"	"intron (NM_001142272, intron 2 of 11)"	-12843	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr17.1226128.-	chr17	1226128	1226129	-	0	NA	Intergenic	AluSx|SINE|Alu	-43171	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr5.65272929.-	chr5	65272929	65272930	-	0	NA	"intron (NM_001253699, intron 1 of 25)"	SVA_D|Other|Other	31528	NR_028474	100303749	Hs.608060	NR_028474		LOC100303749	-	"LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene"	pseudo
chr17.61934454.+	chr17	61934454	61934455	+	0	NA	promoter-TSS (NR_002947)	promoter-TSS (NR_002947)	78	NR_002947	146771	Hs.629177	NR_002947	ENSG00000240280	TCAM1P	TCAM1	"testicular cell adhesion molecule 1, pseudogene"	pseudo
chr9.139555583.+	chr9	139555583	139555584	+	0	NA	"intron (NR_046367, intron 1 of 9)"	"intron (NR_046367, intron 1 of 9)"	-1796	NM_016215	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chrX.133976876.+	chrX	133976876	133976877	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35653	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr2.68031679.+	chr2	68031679	68031680	+	0	NA	Intergenic	AluY|SINE|Alu	258480	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr2.87642260.+	chr2	87642260	87642261	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-112714	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr1.17298919.+	chr1	17298919	17298920	+	0	NA	"exon (NM_014675, exon 37 of 37)"	"exon (NM_014675, exon 37 of 37)"	8254	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr18.5524258.+	chr18	5524258	5524259	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19728	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr7.12595816.-	chr7	12595816	12595817	-	0	NA	Intergenic	LTR12C|LTR|ERV1	14387	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr5.178157368.-	chr5	178157368	178157369	-	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	-335	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr19.45406770.+	chr19	45406770	45406771	+	0	NA	"3' UTR (NM_001128916, exon 10 of 10)"	"3' UTR (NM_001128916, exon 10 of 10)"	-2269	NM_000041	348	Hs.654439	NM_000041	ENSG00000130203	APOE	AD2|LDLCQ5|LPG	apolipoprotein E	protein-coding
chr12.34492678.+	chr12	34492678	34492679	+	0	NA	Intergenic	GSATII|Satellite|centr	317462	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.204121227.+	chr2	204121227	204121228	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18063	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr18.55445715.+	chr18	55445715	55445716	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24612	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr11.3224478.+	chr11	3224478	3224479	+	0	NA	Intergenic	Intergenic	-15084	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr14.105618919.-	chr14	105618919	105618920	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16242	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr2.83587594.+	chr2	83587594	83587595	+	0	NA	Intergenic	AluY|SINE|Alu	503667	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr5.137550351.+	chr5	137550351	137550352	+	0	NA	Intergenic	AluY|SINE|Alu	-1319	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr4.190520764.+	chr4	190520764	190520765	+	0	NA	Intergenic	Intergenic	-341210	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chrY.59004224.-	chrY	59004224	59004225	-	0	NA	Intergenic	AluSq2|SINE|Alu	96233	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
chr2.101214321.-	chr2	101214321	101214322	-	0	NA	Intergenic	AluY|SINE|Alu	-34903	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.1896139.-	chr2	1896139	1896140	-	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	147848	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr8.141523804.-	chr8	141523804	141523805	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1723	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr7.156237771.-	chr7	156237771	156237772	-	0	NA	"non-coding (NR_038232, exon 1 of 3)"	"non-coding (NR_038232, exon 1 of 3)"	-511	NR_038232	285889	Hs.407095	NR_038232	ENSG00000233878	LOC285889	-	uncharacterized LOC285889	miscRNA
chr2.172951828.+	chr2	172951828	172951829	+	0	NA	"intron (NM_178120, intron 2 of 2)"	CpG-15712	1620	NM_001038493	1745	Hs.407015	NM_001038493	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
chr10.28821897.-	chr10	28821897	28821898	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-475	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr13.51885860.-	chr13	51885860	51885861	-	0	NA	Intergenic	AluSx|SINE|Alu	29308	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr2.109985531.-	chr2	109985531	109985532	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55450	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr2.106682184.-	chr2	106682184	106682185	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-71	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr16.3109387.-	chr16	3109387	3109388	-	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	5926	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr9.12352812.-	chr9	12352812	12352813	-	0	NA	Intergenic	AluY|SINE|Alu	340574	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr4.138974455.-	chr4	138974455	138974456	-	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	35713	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr3.32863313.+	chr3	32863313	32863314	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3803	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr8.142440407.-	chr8	142440407	142440408	-	0	NA	"intron (NM_032611, intron 4 of 4)"	CpG	-8400	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr7.5334593.-	chr7	5334593	5334594	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12032	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr8.57359109.-	chr8	57359109	57359110	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-173	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr12.118079865.-	chr12	118079865	118079866	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280258	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr15.75701809.+	chr15	75701809	75701810	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	"intron (NM_001145357, intron 8 of 20)"	-40841	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chrM.135.+	chrM	135	136	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.34070255.+	chr9	34070255	34070256	+	0	NA	Intergenic	AluSz|SINE|Alu	-21308	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr22.38008305.+	chr22	38008305	38008306	+	0	NA	"intron (NM_001172688, intron 1 of 17)"	AluY|SINE|Alu	3258	NM_001172688	26088	Hs.499158	NM_001001560	ENSG00000100083	GGA1	-	"golgi-associated, gamma adaptin ear containing, ARF binding protein 1"	protein-coding
chr2.239058268.-	chr2	239058268	239058269	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10905	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr15.63892533.-	chr15	63892533	63892534	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-493	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr9.28865664.+	chr9	28865664	28865665	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluSc8|SINE|Alu	-1960	NR_030597	100126310		NR_030597	ENSG00000215966	MIR876	MIRN876|hsa-mir-876	microRNA 876	miscRNA
chr19.796153.+	chr19	796153	796154	+	0	NA	Intergenic	Intergenic	-1239	NM_031991	5725	Hs.172550	NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
chr20.19431523.+	chr20	19431523	19431524	+	0	NA	"intron (NM_020689, intron 2 of 16)"	AluSz|SINE|Alu	-166283	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	miscRNA
chr1.54953550.-	chr1	54953550	54953551	-	0	NA	Intergenic	Intergenic	60257	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr20.13660601.-	chr20	13660601	13660602	-	0	NA	Intergenic	AluY|SINE|Alu	41018	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr16.28435262.+	chr16	28435262	28435263	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2513	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr18.13095652.+	chr18	13095652	13095653	+	0	NA	"exon (NM_032142, exon 35 of 45)"	"exon (NM_032142, exon 35 of 45)"	104291	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr9.8858123.+	chr9	8858123	8858124	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124177	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.98771762.-	chr8	98771762	98771763	-	0	NA	Intergenic	AluSq10|SINE|Alu	16047	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr12.3120263.+	chr12	3120263	3120264	+	0	NA	"intron (NM_201443, intron 2 of 10)"	"intron (NM_201443, intron 2 of 10)"	51515	NM_201443	7004	Hs.94865	NM_003213	ENSG00000197905	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain family member 4	protein-coding
chr13.50508419.+	chr13	50508419	50508420	+	0	NA	"intron (NM_020456, intron 1 of 4)"	AluSq|SINE|Alu	2206	NR_023351	57213	Hs.44235	NM_001127482	ENSG00000123178	SPRYD7	C13orf1|CLLD6	SPRY domain containing 7	protein-coding
chr15.76627372.+	chr15	76627372	76627373	+	0	NA	Intergenic	AluSg|SINE|Alu	-1775	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr1.102295533.+	chr1	102295533	102295534	+	0	NA	"intron (NM_058170, intron 3 of 5)"	AluY|SINE|Alu	-42034	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	"DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5"	pseudo
chr1.24513575.-	chr1	24513575	24513576	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-190	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr16.13534736.+	chr16	13534736	13534737	+	0	NA	Intergenic	AluSc|SINE|Alu	-479278	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr1.97799168.-	chr1	97799168	97799169	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237689	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr20.33726569.-	chr20	33726569	33726570	-	0	NA	"intron (NM_001145025, intron 3 of 9)"	AluY|SINE|Alu	-8592	NR_026728	55741	Hs.720177	NM_001145025	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	"ER degradation enhancer, mannosidase alpha-like 2"	protein-coding
chr1.7739293.+	chr1	7739293	7739294	+	0	NA	"intron (NM_015215, intron 11 of 22)"	"intron (NM_015215, intron 11 of 22)"	-92036	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr20.55206490.+	chr20	55206490	55206491	+	0	NA	"exon (NM_003222, exon 2 of 7)"	"exon (NM_003222, exon 2 of 7)"	2132	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr6.170055436.-	chr6	170055436	170055437	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46723	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr15.90327992.-	chr15	90327992	90327993	-	0	NA	TTS (NM_001150)	TTS (NM_001150)	-8403	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr3.9429731.+	chr3	9429731	9429732	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9443	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr11.82271666.+	chr11	82271666	82271667	+	0	NA	Intergenic	AluY|SINE|Alu	173240	NM_175885	220382	Hs.448218	NM_175885	ENSG00000182103	FAM181B	-	"family with sequence similarity 181, member B"	protein-coding
chr4.55034890.-	chr4	55034890	55034891	-	0	NA	Intergenic	AluSx3|SINE|Alu	60374	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr7.5396304.+	chr7	5396304	5396305	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66873	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr14.65007476.+	chr14	65007476	65007477	+	0	NA	"5' UTR (NM_021979, exon 1 of 1)"	"5' UTR (NM_021979, exon 1 of 1)"	290	NM_021979	3306	Hs.432648	NM_021979	ENSG00000126803	HSPA2	HSP70-2|HSP70-3	heat shock 70kDa protein 2	protein-coding
chr14.71276309.+	chr14	71276309	71276310	+	0	NA	promoter-TSS (NM_033141)	promoter-TSS (NM_033141)	-421	NM_033141	4293	Hs.593542	NM_033141		MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
chr5.159429734.-	chr5	159429734	159429735	-	0	NA	Intergenic	AluSz|SINE|Alu	6446	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chrX.145183512.+	chrX	145183512	145183513	+	0	NA	Intergenic	AluJb|SINE|Alu	-74122	NR_030581	100126341		NR_030581	ENSG00000216056	MIR891A	MIRN891A	microRNA 891a	miscRNA
chr17.48630986.+	chr17	48630986	48630987	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6536	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr2.133015902.+	chr2	133015902	133015903	+	0	NA	promoter-TSS (NR_027020)	promoter-TSS (NR_027020)	-360	NR_027020	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B-like	pseudo
chr17.17894903.-	chr17	17894903	17894904	-	0	NA	"intron (NM_031294, intron 5 of 13)"	AluSc8|SINE|Alu	-18776	NM_001130092	83450	Hs.579264	NM_001130090	ENSG00000171962	LRRC48	-	leucine rich repeat containing 48	protein-coding
chr19.35368132.+	chr19	35368132	35368133	+	0	NA	Intergenic	AluY|SINE|Alu	21715	NR_046222	100652909	Hs.374015	NR_046222		LOC100652909	-	uncharacterized LOC100652909	miscRNA
chr22.46929361.+	chr22	46929361	46929362	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3706	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr7.100362779.-	chr7	100362779	100362780	-	0	NA	"intron (NM_173059, intron 22 of 45)"	"intron (NM_173059, intron 22 of 45)"	-31530	NM_003386	7455	Hs.307004	NM_003386	ENSG00000146839	ZAN	-	zonadhesin	protein-coding
chr16.6394212.+	chr16	6394212	6394213	+	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluSq10|SINE|Alu	325080	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr9.86597332.-	chr9	86597332	86597333	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1695	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr6.33811476.-	chr6	33811476	33811477	-	0	NA	Intergenic	LTR33|LTR|ERVL	39683	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr16.443659.+	chr16	443659	443660	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3533	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr18.49731954.+	chr18	49731954	49731955	+	0	NA	Intergenic	AluY|SINE|Alu	-134588	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr20.57575091.+	chr20	57575091	57575092	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7218	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr1.228270599.+	chr1	228270599	228270600	+	0	NA	promoter-TSS (NM_001024228)	promoter-TSS (NM_001024228)	238	NM_001024226	375	Hs.286221	NM_001024226	ENSG00000143761	ARF1	-	ADP-ribosylation factor 1	protein-coding
chr2.91777710.+	chr2	91777710	91777711	+	0	NA	Intergenic	CpG	70265	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr10.11719968.-	chr10	11719968	11719969	-	0	NA	Intergenic	AluSz|SINE|Alu	64388	NM_024693	79746	Hs.22242	NM_024693	ENSG00000134463	ECHDC3	-	enoyl CoA hydratase domain containing 3	protein-coding
chr16.71414334.+	chr16	71414334	71414335	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21718	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr1.121484508.-	chr1	121484508	121484509	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-223598	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr18.33709938.+	chr18	33709938	33709939	+	0	NA	promoter-TSS (NM_012319)	promoter-TSS (NM_012319)	101	NR_040110	55250	Hs.8739	NM_001242875	ENSG00000134759	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
chr22.50959109.-	chr22	50959109	50959110	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4924	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr17.54911892.+	chr17	54911892	54911893	+	0	NA	promoter-TSS (NM_001085430)	promoter-TSS (NM_001085430)	432	NM_003647	8526	Hs.239514	NM_003647	ENSG00000153933	DGKE	DAGK5|DAGK6|DGK|NPHS7	"diacylglycerol kinase, epsilon 64kDa"	protein-coding
chr20.62104534.-	chr20	62104534	62104535	-	0	NA	promoter-TSS (NM_172107)	promoter-TSS (NM_172107)	541	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr2.136403842.-	chr2	136403842	136403843	-	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	19125	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr11.134201835.-	chr11	134201835	134201836	-	0	NA	promoter-TSS (NM_138342)	promoter-TSS (NM_138342)	-67	NM_138342	89944	Hs.436178	NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	"galactosidase, beta 1-like 2"	protein-coding
chr22.18892186.+	chr22	18892186	18892187	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1550	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr12.100804203.-	chr12	100804203	100804204	-	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	-53346	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr3.80581467.+	chr3	80581467	80581468	+	0	NA	Intergenic	AluSg|SINE|Alu	-764408	NM_002941	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr9.138437862.+	chr9	138437862	138437863	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-123	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr7.130728480.+	chr7	130728480	130728481	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63309	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr17.3820301.+	chr17	3820301	3820302	+	0	NA	promoter-TSS (NM_002558)	promoter-TSS (NM_002558)	-341	NM_002558	5023	Hs.41735	NM_002558	ENSG00000108405	P2RX1	P2X1	"purinergic receptor P2X, ligand-gated ion channel, 1"	protein-coding
chr3.48742534.-	chr3	48742534	48742535	-	0	NA	"intron (NM_001005910, intron 1 of 2)"	AluY|SINE|Alu	-12177	NM_001146179	51447	Hs.595983	NM_001005909	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
chr3.183052394.-	chr3	183052394	183052395	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81362	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr10.125611173.+	chr10	125611173	125611174	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40327	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr14.104989681.-	chr14	104989681	104989682	-	0	NA	Intergenic	Intergenic	56375	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chr1.154218117.-	chr1	154218117	154218118	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	AluY|SINE|Alu	-24792	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr2.43254046.+	chr2	43254046	43254047	+	0	NA	Intergenic	Intergenic	199699	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr1.197754584.-	chr1	197754584	197754585	-	0	NA	Intergenic	AluY|SINE|Alu	9961	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr2.86850360.+	chr2	86850360	86850361	+	0	NA	"5' UTR (NM_001198952, exon 1 of 3)"	"5' UTR (NM_001198952, exon 1 of 3)"	640	NM_001198952	7844	Hs.733319	NM_001198951	ENSG00000239305	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
chr13.50222177.-	chr13	50222177	50222178	-	0	NA	Intergenic	AluY|SINE|Alu	-19742	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr22.29760748.-	chr22	29760748	29760749	-	0	NA	"intron (NM_001127, intron 2 of 22)"	AluSx|SINE|Alu	-23824	NM_001127	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	"adaptor-related protein complex 1, beta 1 subunit"	protein-coding
chr7.138005720.-	chr7	138005720	138005721	-	0	NA	Intergenic	MER61A|LTR|ERV1	139359	NM_015905	8805	Hs.490287	NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
chr17.77657001.+	chr17	77657001	77657002	+	0	NA	Intergenic	AluY|SINE|Alu	24057	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	-	microRNA 4739	miscRNA
chr2.1896143.+	chr2	1896143	1896144	+	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	-147852	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr1.29459424.-	chr1	29459424	29459425	-	0	NA	Intergenic	AluSx|SINE|Alu	9003	NM_001003682	399474	Hs.712722	NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
chr12.89754115.+	chr12	89754115	89754116	+	0	NA	Intergenic	AluY|SINE|Alu	-7819	NM_022652	1848	Hs.718640	NM_001946	ENSG00000139318	DUSP6	MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chr10.47621258.-	chr10	47621258	47621259	-	0	NA	Intergenic	Intergenic	125662	NM_001630	244	Hs.705389	NM_001630	ENSG00000186807	ANXA8L2	ANXA8|bA145E20.2	annexin A8-like 2	protein-coding
chr4.69917116.+	chr4	69917116	69917117	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-31003	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr2.136760843.-	chr2	136760843	136760844	-	0	NA	Intergenic	AluSq2|SINE|Alu	17621	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr1.78230571.-	chr1	78230571	78230572	-	0	NA	Intergenic	AluSz|SINE|Alu	5007	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr8.86574468.+	chr8	86574468	86574469	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	274	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr10.120427067.-	chr10	120427067	120427068	-	0	NA	Intergenic	AluSp|SINE|Alu	71907	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr21.34758264.-	chr21	34758264	34758265	-	0	NA	Intergenic	AluSp|SINE|Alu	16938	NM_005534	3460	Hs.634632	NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
chrM.6376.-	chrM	6376	6377	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.121168076.+	chr12	121168076	121168077	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSg|SINE|Alu	4505	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr13.19518221.-	chr13	19518221	19518222	-	0	NA	Intergenic	GSATX|Satellite|centr	64178	NR_026852	348021	Hs.314114	NR_026852	ENSG00000232685	LINC00442	-	long intergenic non-protein coding RNA 442	miscRNA
chr20.5616787.+	chr20	5616787	5616788	+	0	NA	Intergenic	MER41A|LTR|ERV1	-25115	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	protein-coding
chr9.10787000.+	chr9	10787000	10787001	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174277	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.43253967.+	chr2	43253967	43253968	+	0	NA	Intergenic	Intergenic	199778	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr4.188471106.-	chr4	188471106	188471107	-	0	NA	Intergenic	AluSg|SINE|Alu	44339	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr6.165122652.+	chr6	165122652	165122653	+	0	NA	Intergenic	Intergenic	600459	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr5.133819936.+	chr5	133819936	133819937	+	0	NA	Intergenic	AluY|SINE|Alu	-41862	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr19.2984342.+	chr19	2984342	2984343	+	0	NA	"intron (NM_024760, intron 4 of 15)"	"intron (NM_024760, intron 4 of 15)"	6806	NM_001143986	79816	Hs.334507	NM_001143986	ENSG00000104953	TLE6	GRG6	"transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)"	protein-coding
chr2.124726143.-	chr2	124726143	124726144	-	0	NA	Intergenic	AluSc8|SINE|Alu	56721	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr2.213546633.+	chr2	213546633	213546634	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143281	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr4.183675892.+	chr4	183675892	183675893	+	0	NA	"exon (NM_001080477, exon 21 of 27)"	"exon (NM_001080477, exon 21 of 27)"	162738	NM_001921	1635	Hs.183850	NM_001012732	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
chr6.34004257.-	chr6	34004257	34004258	-	0	NA	"exon (NM_000841, exon 9 of 11)"	"exon (NM_000841, exon 9 of 11)"	36429	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr14.23438204.-	chr14	23438204	23438205	-	0	NA	Intergenic	AluSx1|SINE|Alu	-8228	NM_198086	84962	Hs.655832	NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
chr17.18785237.-	chr17	18785237	18785238	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16455	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr4.8859970.+	chr4	8859970	8859971	+	0	NA	Intergenic	CpG	13573	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr9.76965963.+	chr9	76965963	76965964	+	0	NA	Intergenic	AluSp|SINE|Alu	-146289	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr1.40260012.+	chr1	40260012	40260013	+	0	NA	Intergenic	AluY|SINE|Alu	-5479	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chrX.41169475.+	chrX	41169475	41169476	+	0	NA	Intergenic	AluY|SINE|Alu	-23176	NM_001356	1654	Hs.743263	NM_001193416	ENSG00000215301	DDX3X	DBX|DDX14|DDX3|HLP2	"DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked"	protein-coding
chr18.77627589.+	chr18	77627589	77627590	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3921	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr6.46742359.-	chr6	46742359	46742360	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18735	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr15.75701808.+	chr15	75701808	75701809	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	"intron (NM_001145357, intron 8 of 20)"	-40840	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr4.262516.-	chr4	262516	262517	-	0	NA	Intergenic	AluY|SINE|Alu	-27428	NM_001137608	654254	Hs.698668	NM_001137608		ZNF732	-	zinc finger protein 732	protein-coding
chr5.176075368.-	chr5	176075368	176075369	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-980	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr10.50948727.-	chr10	50948727	50948728	-	0	NA	"intron (NM_018245, intron 16 of 22)"	"intron (NM_018245, intron 16 of 22)"	-21698	NM_001143997	55753	Hs.17860	NM_001143996	ENSG00000197444	OGDHL	-	oxoglutarate dehydrogenase-like	protein-coding
chr5.39334767.+	chr5	39334767	39334768	+	0	NA	"intron (NM_001737, intron 4 of 10)"	SVA_D|Other|Other	29888	NM_001737	735	Hs.654443	NM_001737	ENSG00000113600	C9	-	complement component 9	protein-coding
chr2.108084956.+	chr2	108084956	108084957	+	0	NA	Intergenic	LTR12C|LTR|ERV1	357627	NR_024439	729121	Hs.386155	XR_159390	ENSG00000230651	LOC729121	-	uncharacterized LOC729121	miscRNA
chr6.123144193.-	chr6	123144193	123144194	-	0	NA	Intergenic	AluY|SINE|Alu	-34222	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr12.122667621.-	chr12	122667621	122667622	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	46	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr8.82599901.+	chr8	82599901	82599902	+	0	NA	Intergenic	AluY|SINE|Alu	-1312	NM_001144879	3612	Hs.656694	NM_001144878		IMPA1	IMP|IMPA	inositol(myo)-1(or 4)-monophosphatase 1	protein-coding
chr16.632076.-	chr16	632076	632077	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7281	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr19.47249352.-	chr19	47249352	47249353	-	0	NA	promoter-TSS (NM_024301)	promoter-TSS (NM_024301)	-49	NM_024301	79147	Hs.515493	NM_001039885	ENSG00000181027	FKRP	LGMD2I|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
chr5.57859843.+	chr5	57859843	57859844	+	0	NA	Intergenic	SVA_A|Other|Other	-19096	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr4.989216.-	chr4	989216	989217	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1992	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr12.121338277.+	chr12	121338277	121338278	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3878	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr7.70646759.-	chr7	70646759	70646760	-	0	NA	"intron (NM_022479, intron 1 of 10)"	AluJr|SINE|Alu	-49236	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr3.81337962.-	chr3	81337962	81337963	-	0	NA	Intergenic	AluY|SINE|Alu	-472988	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr5.10184579.-	chr5	10184579	10184580	-	0	NA	Intergenic	AluSq|SINE|Alu	-65442	NR_047669	134145	Hs.481569	NM_001258388		FAM173B	JS-2	"family with sequence similarity 173, member B"	protein-coding
chr15.93634902.+	chr15	93634902	93634903	+	0	NA	Intergenic	Intergenic	-2459	NM_020211	56963	Hs.271277	NM_001166283	ENSG00000182175	RGMA	RGM	"RGM domain family, member A"	protein-coding
chr8.123636938.+	chr8	123636938	123636939	+	0	NA	Intergenic	AluSx|SINE|Alu	-156963	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr4.95697007.+	chr4	95697007	95697008	+	0	NA	"intron (NM_001203, intron 1 of 12)"	AluY|SINE|Alu	17879	NM_001203	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr9.6807798.-	chr9	6807798	6807799	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50157	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr17.72262259.+	chr17	72262259	72262260	+	0	NA	Intergenic	AluJb|SINE|Alu	-8127	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr19.34248216.-	chr19	34248216	34248217	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39535	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr1.6132109.+	chr1	6132109	6132110	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25935	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr3.49479494.+	chr3	49479494	49479495	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12737	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr3.32544043.-	chr3	32544043	32544044	-	0	NA	"intron (NM_017801, intron 1 of 3)"	CpG	-360	NM_017801	54918	Hs.731820	NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF-like MARVEL transmembrane domain containing 6	protein-coding
chr2.207270715.+	chr2	207270715	207270716	+	0	NA	Intergenic	AluY|SINE|Alu	-37653	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chrX.25544578.-	chrX	25544578	25544579	-	0	NA	Intergenic	AluSc5|SINE|Alu	510513	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
chr16.87648683.+	chr16	87648683	87648684	+	0	NA	"intron (NM_020655, intron 1 of 4)"	CpG	12190	NM_001271605	57338	Hs.733790	NM_001271604	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
chr20.4729643.-	chr20	4729643	4729644	-	0	NA	Intergenic	Intergenic	8329	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr3.158905917.-	chr3	158905917	158905918	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	"intron (NM_001197114, intron 1 of 9)"	85119	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr8.1321523.+	chr8	1321523	1321524	+	0	NA	Intergenic	CpG	-70696	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr5.141233783.+	chr5	141233783	141233784	+	0	NA	"exon (NM_032420, exon 5 of 5)"	"exon (NM_032420, exon 5 of 5)"	24161	NM_002587	5097	Hs.79769	NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
chr12.34492671.+	chr12	34492671	34492672	+	0	NA	Intergenic	GSATII|Satellite|centr	317455	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.39267436.-	chr2	39267436	39267437	-	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	79951	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr12.70060082.+	chr12	70060082	70060083	+	0	NA	"intron (NM_032735, intron 9 of 9)"	AluSz|SINE|Alu	22974	NM_152439	144453	Hs.280782	NM_032735	ENSG00000127325	BEST3	VMD2L3	bestrophin 3	protein-coding
chr18.70912374.+	chr18	70912374	70912375	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19359	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr16.4537723.-	chr16	4537723	4537724	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8136	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr20.13660609.+	chr20	13660609	13660610	+	0	NA	Intergenic	AluY|SINE|Alu	-41026	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr5.54539381.+	chr5	54539381	54539382	+	0	NA	Intergenic	AluSc|SINE|Alu	-9873	NM_021147	10309	Hs.3041	NM_001024592	ENSG00000152669	CCNO	CCNU|UDG2	cyclin O	protein-coding
chr13.25859703.+	chr13	25859703	25859704	+	0	NA	"intron (NM_004685, intron 1 of 13)"	AluSx1|SINE|Alu	2001	NM_004685	9107	Hs.643702	NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
chr8.143698153.-	chr8	143698153	143698154	-	0	NA	Intergenic	Intergenic	2320	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr21.43198297.+	chr21	43198297	43198298	+	0	NA	Intergenic	Intergenic	-11048	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr9.14830745.+	chr9	14830745	14830746	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51214	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr2.237068217.+	chr2	237068217	237068218	+	0	NA	Intergenic	CpG	8435	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr1.24513585.-	chr1	24513585	24513586	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-180	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr1.210574709.-	chr1	210574709	210574710	-	0	NA	"intron (NM_001170587, intron 4 of 10)"	AluSx1|SINE|Alu	-72069	NM_001170580	55733	Hs.58650	NM_001122834	ENSG00000054392	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
chr10.7626552.+	chr10	7626552	7626553	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35084	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr8.100115786.+	chr8	100115786	100115787	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90292	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr9.138397722.+	chr9	138397722	138397723	+	0	NA	Intergenic	Intergenic	5245	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr5.3188310.-	chr5	3188310	3188311	-	0	NA	Intergenic	CpG	-347898	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr10.76198244.+	chr10	76198244	76198245	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	261997	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr13.28528581.+	chr13	28528581	28528582	+	0	NA	Intergenic	CpG	9238	NR_002162	432369	Hs.574118	NR_002162	ENSG00000180389	ATP5EP2	-	"ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2"	pseudo
chr12.92086127.+	chr12	92086127	92086128	+	0	NA	Intergenic	AluSx3|SINE|Alu	449362	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr12.121330513.-	chr12	121330513	121330514	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluY|SINE|Alu	-11642	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr13.31735109.-	chr13	31735109	31735110	-	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	-1008	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr19.4141922.-	chr19	4141922	4141923	-	0	NA	Intergenic	AluY|SINE|Alu	11676	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr12.119418789.+	chr12	119418789	119418790	+	0	NA	promoter-TSS (NM_194286)	promoter-TSS (NM_194286)	-511	NM_194286	84530	Hs.112577	NM_194286	ENSG00000139767	SRRM4	KIAA1853|MU-MB-2.76|nSR100	serine/arginine repetitive matrix 4	protein-coding
chr17.48630997.-	chr17	48630997	48630998	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6547	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr1.181382551.-	chr1	181382551	181382552	-	0	NA	Intergenic	CpG	70135	NM_001205293	777	Hs.437444	NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	"calcium channel, voltage-dependent, R type, alpha 1E subunit"	protein-coding
chrX.153095525.-	chrX	153095525	153095526	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-478	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr4.133021285.+	chr4	133021285	133021286	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1049185	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr9.130635707.-	chr9	130635707	130635708	-	0	NA	"intron (NM_000476, intron 2 of 6)"	"intron (NM_000476, intron 2 of 6)"	3933	NR_039819	100616429		NR_039819		MIR4672	-	microRNA 4672	miscRNA
chr1.183892720.-	chr1	183892720	183892721	-	0	NA	"intron (NM_015149, intron 18 of 18)"	MIRc|SINE|MIR	-114143	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr3.102973907.-	chr3	102973907	102973908	-	0	NA	Intergenic	SVA_D|Other|Other	-820048	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr8.23097394.-	chr8	23097394	23097395	-	0	NA	Intergenic	AluY|SINE|Alu	3756	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr20.46019531.+	chr20	46019531	46019532	+	0	NA	Intergenic	AluY|SINE|Alu	-34057	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr19.14156299.-	chr19	14156299	14156300	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13672	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr3.196045130.-	chr3	196045130	196045131	-	0	NA	promoter-TSS (NM_152773)	promoter-TSS (NM_152773)	-35	NM_152773	255758	Hs.733180	NM_152773	ENSG00000213123	TCTEX1D2	-	Tctex1 domain containing 2	protein-coding
chr13.88877263.-	chr13	88877263	88877264	-	0	NA	Intergenic	AluY|SINE|Alu	315821	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr17.15122385.-	chr17	15122385	15122386	-	0	NA	Intergenic	AluY|SINE|Alu	-32628	NR_039884	100616125		NR_039884		MIR4731	-	microRNA 4731	miscRNA
chr11.19881566.-	chr11	19881566	19881567	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99937	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr3.192224882.+	chr3	192224882	192224883	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	-98044	NM_021032	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr2.240371776.+	chr2	240371776	240371777	+	0	NA	Intergenic	SVA_D|Other|Other	-49133	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr8.60674693.+	chr8	60674693	60674694	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519261	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr17.80004575.+	chr17	80004575	80004576	+	0	NA	Intergenic	Intergenic	5075	NM_002917	5986	Hs.569700	NM_002917	ENSG00000169733	RFNG	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chrX.53369429.+	chrX	53369429	53369430	+	0	NA	Intergenic	AluSx|SINE|Alu	-18907	NM_001111125	23096	Hs.496138	NM_001111125	ENSG00000124313	IQSEC2	BRAG1|MRX1	IQ motif and Sec7 domain 2	protein-coding
chr2.58077689.+	chr2	58077689	58077690	+	0	NA	Intergenic	Intergenic	-196088	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr10.103852112.+	chr10	103852112	103852113	+	0	NA	Intergenic	AluSc|SINE|Alu	22611	NM_003893	8861	Hs.454418	NM_001113407	ENSG00000198728	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
chr10.44870343.+	chr10	44870343	44870344	+	0	NA	TTS (NM_001033886)	TTS (NM_001033886)	10202	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr1.110881141.+	chr1	110881141	110881142	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	652	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr20.61885476.+	chr20	61885476	61885477	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	146	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr1.183670804.-	chr1	183670804	183670805	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48356	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr22.41521450.-	chr22	41521450	41521451	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32836	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr13.20387509.+	chr13	20387509	20387510	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30350	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr1.62231190.+	chr1	62231190	62231191	+	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	23041	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr7.66480037.-	chr7	66480037	66480038	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18245	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr11.9243423.+	chr11	9243423	9243424	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43450	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr3.60261977.-	chr3	60261977	60261978	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluY|SINE|Alu	-975156	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chrX.30619875.+	chrX	30619875	30619876	+	0	NA	Intergenic	SVA_F|Other|Other	-23842	NM_025159	80231	Hs.665009	NM_025159	ENSG00000120280	CXorf21	-	chromosome X open reading frame 21	protein-coding
chr5.171395348.+	chr5	171395348	171395349	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38529	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr17.48631030.+	chr17	48631030	48631031	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6580	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr2.29554968.-	chr2	29554968	29554969	-	0	NA	"intron (NM_004304, intron 5 of 28)"	AluSc8|SINE|Alu	-216660	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr11.384744.+	chr11	384744	384745	+	0	NA	Intergenic	Intergenic	-9473	NM_007183	11187	Hs.534395	NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
chr20.13910456.-	chr20	13910456	13910457	-	0	NA	"intron (NR_073207, intron 3 of 18)"	AluSx|SINE|Alu	-60809	NR_073206	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding
chr11.67351049.-	chr11	67351049	67351050	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	17	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr2.202092551.-	chr2	202092551	202092552	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5615	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr17.29255181.+	chr17	29255181	29255182	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6427	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr21.34775813.+	chr21	34775813	34775814	+	0	NA	"5' UTR (NM_005534, exon 1 of 7)"	"5' UTR (NM_005534, exon 1 of 7)"	611	NM_005534	3460	Hs.634632	NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
chrY.9930601.-	chrY	9930601	9930602	-	0	NA	Intergenic	5S|rRNA|rRNA	-182194	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr1.40953732.+	chr1	40953732	40953733	+	0	NA	"intron (NM_198494, intron 3 of 5)"	"intron (NM_198494, intron 3 of 5)"	10430	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr1.156030233.-	chr1	156030233	156030234	-	0	NA	promoter-TSS (NM_020387)	promoter-TSS (NM_020387)	733	NM_020387	57111	Hs.632469	NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	"RAB25, member RAS oncogene family"	protein-coding
chr16.70356400.+	chr16	70356400	70356401	+	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	23338	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr3.129868000.-	chr3	129868000	129868001	-	0	NA	Intergenic	HERVE-int|LTR|ERV1	37724	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr1.113217678.-	chr1	113217678	113217679	-	0	NA	"intron (NM_020963, intron 2 of 20)"	CpG-1443	-630	NM_001130079	4343	Hs.514941	NM_001130079	ENSG00000155363	MOV10	fSAP113|gb110	"Mov10, Moloney leukemia virus 10, homolog (mouse)"	protein-coding
chr1.17267878.+	chr1	17267878	17267879	+	0	NA	"intron (NM_014675, intron 13 of 36)"	AluSx|SINE|Alu	19433	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr19.52161162.+	chr19	52161162	52161163	+	0	NA	Intergenic	AluSz6|SINE|Alu	-11030	NM_001098612	100049587	Hs.741865	NM_001098612	ENSG00000254415	SIGLEC14	-	sialic acid binding Ig-like lectin 14	protein-coding
chr15.89358725.-	chr15	89358725	89358726	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12051	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr4.3573877.+	chr4	3573877	3573878	+	0	NA	Intergenic	Intergenic	-4719	NR_040045	285492	Hs.145563	NM_173661		FLJ35424	-	uncharacterized FLJ35424	miscRNA
chrX.100277340.+	chrX	100277340	100277341	+	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	29765	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr19.5658844.+	chr19	5658844	5658845	+	0	NA	"intron (NR_037699, intron 12 of 18)"	AluY|SINE|Alu	-21932	NM_198533	374875	Hs.739286	NM_001267868	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid (11-beta) dehydrogenase 1-like	protein-coding
chr5.138488060.-	chr5	138488060	138488061	-	0	NA	"intron (NM_022464, intron 1 of 9)"	AluSx1|SINE|Alu	-46005	NM_022464	64374	Hs.483521	NM_001037633	ENSG00000120725	SIL1	BAP|MSS|ULG5	"SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)"	protein-coding
chrX.72063703.+	chrX	72063703	72063704	+	0	NA	Intergenic	AluSx|SINE|Alu	-1173	NM_001080851	728656	Hs.712728	NM_001080851	ENSG00000184911	DMRTC1B	-	DMRT-like family C1B	protein-coding
chr15.91599280.-	chr15	91599280	91599281	-	0	NA	Intergenic	Intergenic	33447	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr9.80898915.+	chr9	80898915	80898916	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13144	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr15.29130802.+	chr15	29130802	29130803	+	0	NA	Intergenic	CpG	-36981	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr10.71562416.+	chr10	71562416	71562417	+	0	NA	"exon (NM_080800, exon 1 of 38)"	"exon (NM_080800, exon 1 of 38)"	772	NM_080805	1305	Hs.695934	NM_001130103	ENSG00000197467	COL13A1	COLXIIIA1	"collagen, type XIII, alpha 1"	protein-coding
chr11.915955.+	chr11	915955	915956	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-897	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr2.159651790.+	chr2	159651790	159651791	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-39	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr5.178491478.+	chr5	178491478	178491479	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	3871	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr7.121013900.+	chr7	121013900	121013901	+	0	NA	"intron (NM_001040020, intron 3 of 9)"	AluY|SINE|Alu	22522	NM_014888	10447	Hs.434053	NM_001040020	ENSG00000196937	FAM3C	ILEI	"family with sequence similarity 3, member C"	protein-coding
chr10.75806272.+	chr10	75806272	75806273	+	0	NA	"intron (NM_014000, intron 2 of 21)"	AluJb|SINE|Alu	48400	NM_014000	7414	Hs.643896	NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|MVCL	vinculin	protein-coding
chr5.106923359.+	chr5	106923359	106923360	+	0	NA	"intron (NM_001962, intron 1 of 4)"	AluY|SINE|Alu	83237	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
chr14.97183967.+	chr14	97183967	97183968	+	0	NA	Intergenic	AluY|SINE|Alu	-79717	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr14.44126146.-	chr14	44126146	44126147	-	0	NA	Intergenic	AluSc|SINE|Alu	-850353	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr18.67270901.-	chr18	67270901	67270902	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202617	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr17.80385757.-	chr17	80385757	80385758	-	0	NA	"intron (NM_173620, intron 3 of 11)"	"intron (NM_173620, intron 3 of 11)"	9244	NM_175902	79701	Hs.187505	NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
chr8.1562661.+	chr8	1562661	1562662	+	0	NA	"intron (NM_004745, intron 3 of 11)"	"intron (NM_004745, intron 3 of 11)"	113129	NM_004745	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr1.153574178.-	chr1	153574178	153574179	-	0	NA	Intergenic	AluY|SINE|Alu	-11336	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr18.11959890.+	chr18	11959890	11959891	+	0	NA	Intergenic	SVA_D|Other|Other	-21537	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr19.34538914.+	chr19	34538914	34538915	+	0	NA	Intergenic	AluYc|SINE|Alu	-124438	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr6.168149234.-	chr6	168149234	168149235	-	0	NA	Intergenic	Intergenic	-48305	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr8.7212491.-	chr8	7212491	7212492	-	0	NA	"non-coding (NR_027423, exon 1 of 7)"	"non-coding (NR_027423, exon 1 of 7)"	-385	NR_027423	100128890	Hs.694680	NR_027423	ENSG00000215374	FAM66B	FAM66E	"family with sequence similarity 66, member B"	miscRNA
chr2.10666557.-	chr2	10666557	10666558	-	0	NA	Intergenic	CpG	78104	NM_002539	4953	Hs.467701	NM_002539		ODC1	ODC	ornithine decarboxylase 1	protein-coding
chr16.89034081.+	chr16	89034081	89034082	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9423	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr11.72160508.-	chr11	72160508	72160509	-	0	NA	Intergenic	AluY|SINE|Alu	14784	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr10.45240276.-	chr10	45240276	45240277	-	0	NA	Intergenic	AluSx1|SINE|Alu	166488	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr6.24720949.-	chr6	24720949	24720950	-	0	NA	Intergenic	CpG	1546	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr15.63892633.-	chr15	63892633	63892634	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-393	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr13.24105725.-	chr13	24105725	24105726	-	0	NA	Intergenic	LTR12C|LTR|ERV1	38784	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr6.33500239.-	chr6	33500239	33500240	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47831	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr8.107670085.-	chr8	107670085	107670086	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-49	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr20.62679735.+	chr20	62679735	62679736	+	0	NA	"exon (NM_018419, exon 2 of 2)"	"exon (NM_018419, exon 2 of 2)"	1244	NM_018419	54345	Hs.8619	NM_018419	ENSG00000203883	SOX18	HLTS	SRY (sex determining region Y)-box 18	protein-coding
chr17.74894603.+	chr17	74894603	74894604	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25874	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr10.117842702.-	chr10	117842702	117842703	-	0	NA	"intron (NM_001145453, intron 8 of 9)"	"intron (NM_001145453, intron 8 of 9)"	-189117	NM_145793	2674	Hs.388347	NM_001145453	ENSG00000151892	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
chr8.85063583.+	chr8	85063583	85063584	+	0	NA	Intergenic	AluY|SINE|Alu	-31870	NM_001100393	138046	Hs.121663	NM_001100391	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
chrX.79552098.-	chrX	79552098	79552099	-	0	NA	Intergenic	AluSp|SINE|Alu	38905	NM_001170574	169966	Hs.367959	NM_001170574	ENSG00000174016	FAM46D	CT1.26|CT112	"family with sequence similarity 46, member D"	protein-coding
chr8.41583358.-	chr8	41583358	41583359	-	0	NA	"exon (NM_000037, exon 6 of 43)"	"exon (NM_000037, exon 6 of 43)"	60554	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr17.3792510.-	chr17	3792510	3792511	-	0	NA	"intron (NM_172207, intron 1 of 15)"	"intron (NM_172207, intron 1 of 15)"	-1527	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr16.89707656.+	chr16	89707656	89707657	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-16496	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr6.168476209.-	chr6	168476209	168476210	-	0	NA	"intron (NM_024919, intron 1 of 10)"	"intron (NM_024919, intron 1 of 10)"	-323	NM_001122841	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr16.1523850.-	chr16	1523850	1523851	-	0	NA	"intron (NM_001287, intron 1 of 24)"	AluSp|SINE|Alu	-1235	NM_001287	1186	Hs.459649	NM_001114331	ENSG00000103249	CLCN7	CLC-7|CLC7|OPTA2|OPTB4|PPP1R63	"chloride channel, voltage-sensitive 7"	protein-coding
chr9.34070286.-	chr9	34070286	34070287	-	0	NA	Intergenic	AluSz|SINE|Alu	21339	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr12.53535534.+	chr12	53535534	53535535	+	0	NA	Intergenic	AluY|SINE|Alu	22743	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr22.18532520.-	chr22	18532520	18532521	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20369	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr17.47171223.+	chr17	47171223	47171224	+	0	NA	Intergenic	AluSx|SINE|Alu	-38599	NM_001159388	124872	Hs.374679	NM_001159387	ENSG00000167080	B4GALNT2	B4GALT|GALGT2	"beta-1,4-N-acetyl-galactosaminyl transferase 2"	protein-coding
chr22.49447899.+	chr22	49447899	49447900	+	0	NA	Intergenic	CpG	185317	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr2.1817415.-	chr2	1817415	1817416	-	0	NA	"intron (NM_015025, intron 21 of 24)"	MER1B|DNA|hAT-Charlie	69124	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr1.62169588.-	chr1	62169588	62169589	-	0	NA	"intron (NM_032027, intron 3 of 6)"	AluSq2|SINE|Alu	-21507	NM_032027	83941	Hs.656790	NM_032027	ENSG00000162604	TM2D1	BBP	TM2 domain containing 1	protein-coding
chr13.50138607.-	chr13	50138607	50138608	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21112	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr17.79599633.-	chr17	79599633	79599634	-	0	NA	"intron (NM_017921, intron 1 of 16)"	AluSq2|SINE|Alu	-4505	NM_017921	55666	Hs.464333	NM_017921	ENSG00000182446	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
chr14.45101569.+	chr14	45101569	45101570	+	0	NA	Intergenic	AluSx|SINE|Alu	-125070	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr17.18755422.+	chr17	18755422	18755423	+	0	NA	Intergenic	AluSp|SINE|Alu	-4190	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr2.131085558.-	chr2	131085558	131085559	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-14364	NM_032357	84317	Hs.104203	NM_032357	ENSG00000136710	CCDC115	ccp1	coiled-coil domain containing 115	protein-coding
chr11.18743348.+	chr11	18743348	18743349	+	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	4429	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr10.71044944.-	chr10	71044944	71044945	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15188	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr14.102954931.-	chr14	102954931	102954932	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21197	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr13.31024075.+	chr13	31024075	31024076	+	0	NA	Intergenic	AluSq2|SINE|Alu	16006	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr20.5213525.+	chr20	5213525	5213526	+	0	NA	Intergenic	AluJr4|SINE|Alu	81490	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr22.38336359.-	chr22	38336359	38336360	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13295	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr12.112051663.+	chr12	112051663	112051664	+	0	NA	Intergenic	AluY|SINE|Alu	-14183	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chr14.23706407.+	chr14	23706407	23706408	+	0	NA	Intergenic	AluSz|SINE|Alu	48902	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr8.19626658.-	chr8	19626658	19626659	-	0	NA	Intergenic	AluSx1|SINE|Alu	48260	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr1.8021844.+	chr1	8021844	8021845	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	130	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr12.42621971.+	chr12	42621971	42621972	+	0	NA	"intron (NM_001190979, intron 2 of 4)"	SVA_F|Other|Other	10118	NM_001190977	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr16.84987834.+	chr16	84987834	84987835	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	57307	NM_017740	55625	Hs.723447	NM_001145548	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	"zinc finger, DHHC-type containing 7"	protein-coding
chr16.3203726.-	chr16	3203726	3203727	-	0	NA	Intergenic	AluSg|SINE|Alu	-18592	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr5.43563214.+	chr5	43563214	43563215	+	0	NA	Intergenic	AluSg|SINE|Alu	-5693	NM_183323	10605	Hs.482038	NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding
chr2.38191065.+	chr2	38191065	38191066	+	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	13469	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr1.97799188.+	chr1	97799188	97799189	+	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	237709	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chrX.40029595.-	chrX	40029595	40029596	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6987	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr2.70199624.-	chr2	70199624	70199625	-	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	10227	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr2.48776769.-	chr2	48776769	48776770	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	19390	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr5.17207807.+	chr5	17207807	17207808	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9125	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr13.114239633.-	chr13	114239633	114239634	-	0	NA	"intron (NM_007111, intron 1 of 11)"	"intron (NM_007111, intron 1 of 11)"	-577	NM_007111	7027	Hs.79353	NM_007111	ENSG00000198176	TFDP1	DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
chrX.689446.-	chrX	689446	689447	-	0	NA	Intergenic	Intergenic	-104367	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr7.95178702.+	chr7	95178702	95178703	+	0	NA	Intergenic	AluY|SINE|Alu	47223	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr9.34070278.+	chr9	34070278	34070279	+	0	NA	Intergenic	AluSz|SINE|Alu	-21331	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr18.59919509.-	chr18	59919509	59919510	-	0	NA	"intron (NM_020854, intron 11 of 28)"	AluSc|SINE|Alu	-64985	NM_020854	57614	Hs.465323	NM_020854	ENSG00000134444	KIAA1468	HsT3308|HsT885	KIAA1468	protein-coding
chr7.1542785.+	chr7	1542785	1542786	+	0	NA	"exon (NM_001080453, exon 3 of 48)"	"exon (NM_001080453, exon 3 of 48)"	1233	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr6.127738588.+	chr6	127738588	127738589	+	0	NA	Intergenic	AluY|SINE|Alu	41947	NM_014702	9729	Hs.319247	NM_014702		KIAA0408	RP3-403A15.2	KIAA0408	protein-coding
chr18.23534240.-	chr18	23534240	23534241	-	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-136371	NM_001007559	6760	Hs.129261	NM_001007559	ENSG00000141380	SS18	SSXT|SYT	"synovial sarcoma translocation, chromosome 18"	protein-coding
chrX.27921074.+	chrX	27921074	27921075	+	0	NA	Intergenic	AluY|SINE|Alu	78492	NM_001017930	139425	Hs.447365	NM_001017930	ENSG00000226372	DCAF8L1	WDR42B	DDB1 and CUL4 associated factor 8-like 1	protein-coding
chr10.13411694.+	chr10	13411694	13411695	+	0	NA	Intergenic	AluSp|SINE|Alu	-21396	NM_012247	22929	Hs.124027	NM_001195602	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
chr1.183308372.+	chr1	183308372	183308373	+	0	NA	"intron (NM_015039, intron 1 of 10)"	AluY|SINE|Alu	-34363	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr17.7561727.-	chr17	7561727	7561728	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7473	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr10.118500969.-	chr10	118500969	118500970	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1116	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr14.105134412.-	chr14	105134412	105134413	-	0	NA	Intergenic	AluSz|SINE|Alu	-9674	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr7.2186910.-	chr7	2186910	2186911	-	0	NA	"intron (NM_001013836, intron 11 of 18)"	"intron (NM_001013836, intron 11 of 18)"	-85673	NM_001013836	8379	Hs.654838	NM_001013836	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
chr7.124427309.-	chr7	124427309	124427310	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3555	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chrX.39680333.+	chrX	39680333	39680334	+	0	NA	Intergenic	CpG	276386	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr6.168352109.+	chr6	168352109	168352110	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25510	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr16.656883.+	chr16	656883	656884	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16710	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr19.57683690.+	chr19	57683690	57683691	+	0	NA	Intergenic	CpG	-4834	NM_001012729	503835	Hs.585857	NM_001012729		DUXA	-	double homeobox A	protein-coding
chr12.133328272.+	chr12	133328272	133328273	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10179	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr3.50701805.+	chr3	50701805	50701806	+	0	NA	Intergenic	AluY|SINE|Alu	-10706	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr11.83229511.-	chr11	83229511	83229512	-	0	NA	"intron (NM_001206769, intron 15 of 21)"	L1PA4|LINE|L1	-163957	NM_001142702	1740	Hs.367656	NM_001142699	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	"discs, large homolog 2 (Drosophila)"	protein-coding
chr20.62657608.-	chr20	62657608	62657609	-	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	8089	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr22.26565181.+	chr22	26565181	26565182	+	0	NA	promoter-TSS (NM_001184774)	promoter-TSS (NM_001184774)	-259	NM_001184773	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr8.42888212.-	chr8	42888212	42888213	-	0	NA	Intergenic	SVA_D|Other|Other	23230	NR_033698	2339	Hs.370312	NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	"farnesyltransferase, CAAX box, alpha"	protein-coding
chr4.42658266.+	chr4	42658266	42658267	+	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	856	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr18.21826572.-	chr18	21826572	21826573	-	0	NA	"intron (NM_001242508, intron 3 of 15)"	AluSx|SINE|Alu	-25624	NM_018030	114876	Hs.370725	NM_001242508	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
chr1.65532784.+	chr1	65532784	65532785	+	0	NA	Intergenic	CpG	-8593	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr4.143992664.-	chr4	143992664	143992665	-	0	NA	Intergenic	L1PA10|LINE|L1	113406	NM_032557	84640	Hs.480848	NM_032557		USP38	HP43.8KD	ubiquitin specific peptidase 38	protein-coding
chr12.33592638.-	chr12	33592638	33592639	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-116	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr10.94857364.+	chr10	94857364	94857365	+	0	NA	Intergenic	Intergenic	23717	NM_000783	1592	Hs.150595	NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	"cytochrome P450, family 26, subfamily A, polypeptide 1"	protein-coding
chr2.69870906.+	chr2	69870906	69870907	+	0	NA	promoter-TSS (NM_014911)	promoter-TSS (NM_014911)	71	NM_014911	22848	Hs.468878	NM_014911		AAK1	-	AP2 associated kinase 1	protein-coding
chr11.113666003.+	chr11	113666003	113666004	+	0	NA	Intergenic	AluSx|SINE|Alu	15485	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr21.37627687.+	chr21	37627687	37627688	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64800	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr10.105293317.-	chr10	105293317	105293318	-	0	NA	"intron (NM_004210, intron 1 of 5)"	AluY|SINE|Alu	-39582	NM_004210	9148	Hs.594708	NM_004210	ENSG00000107954	NEURL	NEURL1|RNF67|bA416N2.1|neu|neu-1	neuralized homolog (Drosophila)	protein-coding
chr2.239058211.+	chr2	239058211	239058212	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10848	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr15.102030209.+	chr15	102030209	102030210	+	0	NA	promoter-TSS (NM_002570)	promoter-TSS (NM_002570)	-22	NM_138322	5046	Hs.665989	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
chr22.49428521.-	chr22	49428521	49428522	-	0	NA	Intergenic	Intergenic	-165939	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr13.31307211.-	chr13	31307211	31307212	-	0	NA	"intron (NM_001204406, intron 1 of 5)"	AluY|SINE|Alu	2434	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
chr7.128141957.-	chr7	128141957	128141958	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25174	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr2.235355148.+	chr2	235355148	235355149	+	0	NA	Intergenic	Intergenic	50545	NM_005737	10123	Hs.730678	NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
chr22.29760742.-	chr22	29760742	29760743	-	0	NA	"intron (NM_001127, intron 2 of 22)"	AluSx|SINE|Alu	-23830	NM_001127	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	"adaptor-related protein complex 1, beta 1 subunit"	protein-coding
chr18.63211157.-	chr18	63211157	63211158	-	0	NA	Intergenic	AluY|SINE|Alu	206331	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chrM.6472.+	chrM	6472	6473	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.51444010.-	chr1	51444010	51444011	-	0	NA	Intergenic	CpG	-8368	NM_078626	1031	Hs.525324	NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	"cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)"	protein-coding
chr17.42774541.-	chr17	42774541	42774542	-	0	NA	Intergenic	AluY|SINE|Alu	7376	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chrX.49682924.+	chrX	49682924	49682925	+	0	NA	Intergenic	AluSz|SINE|Alu	-4301	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr8.122841347.+	chr8	122841347	122841348	+	0	NA	Intergenic	AluY|SINE|Alu	-187717	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
chr19.56485974.+	chr19	56485974	56485975	+	0	NA	"intron (NM_176811, intron 7 of 9)"	AluYc|SINE|Alu	-25118	NM_153447	126206	Hs.356872	NM_153447	ENSG00000171487	NLRP5	CLR19.8|MATER|NALP5|PAN11|PYPAF8	"NLR family, pyrin domain containing 5"	protein-coding
chr16.82671327.+	chr16	82671327	82671328	+	0	NA	"intron (NM_001220491, intron 1 of 4)"	AluY|SINE|Alu	10928	NM_001220488	1012	Hs.661776	NM_001220488	ENSG00000140945	CDH13	CDHH|P105	"cadherin 13, H-cadherin (heart)"	protein-coding
chr12.26964543.-	chr12	26964543	26964544	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21588	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr12.120959436.+	chr12	120959436	120959437	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7528	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr7.54839981.+	chr7	54839981	54839982	+	0	NA	Intergenic	AluY|SINE|Alu	-13042	NM_001012456	23480	Hs.488282	NM_001012456	ENSG00000132432	SEC61G	SSS1	Sec61 gamma subunit	protein-coding
chr11.133763845.+	chr11	133763845	133763846	+	0	NA	Intergenic	AluY|SINE|Alu	4631	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr17.16215529.+	chr17	16215529	16215530	+	0	NA	"intron (NM_004278, intron 3 of 6)"	SVA_C|Other|Other	30201	NR_031698	100302124		NR_031698		MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	miscRNA
chr3.173023508.-	chr3	173023508	173023509	-	0	NA	Intergenic	AluYc|SINE|Alu	92736	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr22.49428561.-	chr22	49428561	49428562	-	0	NA	Intergenic	Intergenic	-165979	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr5.176778892.+	chr5	176778892	176778893	+	0	NA	promoter-TSS (NM_006816)	promoter-TSS (NM_006816)	-7	NM_006816	10960	Hs.75864	NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	"lectin, mannose-binding 2"	protein-coding
chr22.31988903.+	chr22	31988903	31988904	+	0	NA	"intron (NM_001258326, intron 13 of 30)"	SVA_F|Other|Other	37907	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
chr6.24720952.+	chr6	24720952	24720953	+	0	NA	Intergenic	CpG	-1549	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr5.1386115.+	chr5	1386115	1386116	+	0	NA	Intergenic	CpG	-41113	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1-like	protein-coding
chr14.102101603.+	chr14	102101603	102101604	+	0	NA	Intergenic	Intergenic	73915	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr20.62657613.-	chr20	62657613	62657614	-	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	8084	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr1.27595485.-	chr1	27595485	27595486	-	0	NA	"intron (NM_015023, intron 3 of 15)"	AluSx|SINE|Alu	-34478	NM_001276252	23038	Hs.469154	NM_001276252	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
chr9.127921622.-	chr9	127921622	127921623	-	0	NA	"intron (NM_001123369, intron 2 of 5)"	AluSp|SINE|Alu	15784	NM_001144877	286205	Hs.59504	NM_001144877		SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
chr14.100614372.-	chr14	100614372	100614373	-	0	NA	"intron (NM_206918, intron 2 of 2)"	"intron (NM_206918, intron 2 of 2)"	-11640	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	"delta(4)-desaturase, sphingolipid 2"	protein-coding
chr16.699560.-	chr16	699560	699561	-	0	NA	"intron (NM_145294, intron 1 of 40)"	CpG	-197	NM_145294	197335	Hs.511903	NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19	WD repeat domain 90	protein-coding
chrX.25544603.+	chrX	25544603	25544604	+	0	NA	Intergenic	AluSc5|SINE|Alu	-510538	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
chr17.47363944.+	chr17	47363944	47363945	+	0	NA	Intergenic	AluSx|SINE|Alu	38339	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr12.133366780.+	chr12	133366780	133366781	+	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	-28329	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr7.103012287.-	chr7	103012287	103012288	-	0	NA	"intron (NM_206885, intron 9 of 9)"	AluSg|SINE|Alu	-24316	NM_001204453	5701	Hs.437366	NM_001204453	ENSG00000161057	PSMC2	MSS1|Nbla10058|S7	"proteasome (prosome, macropain) 26S subunit, ATPase, 2"	protein-coding
chr7.1286200.+	chr7	1286200	1286201	+	0	NA	Intergenic	CpG	13546	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr17.57645153.+	chr17	57645153	57645154	+	0	NA	"intron (NM_024612, intron 2 of 17)"	AluY|SINE|Alu	2267	NM_024612	79665	Hs.29403	XM_003846599	ENSG00000108406	DHX40	DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding
chr1.243422559.-	chr1	243422559	243422560	-	0	NA	"intron (NM_006642, intron 1 of 17)"	AluY|SINE|Alu	-3252	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
chr2.31149479.+	chr2	31149479	31149480	+	0	NA	"intron (NR_045602, intron 12 of 15)"	L2a|LINE|L2	-119168	NM_144575	92291	Hs.660911	NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
chr6.21206340.-	chr6	21206340	21206341	-	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	387632	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr19.48946244.-	chr19	48946244	48946245	-	0	NA	"exon (NM_000836, exon 13 of 13)"	"exon (NM_000836, exon 13 of 13)"	2786	NM_031485	83743	Hs.400625	NM_031485		GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate-rich WD repeat containing 1	protein-coding
chr6.166722182.+	chr6	166722182	166722183	+	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	-311	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr13.114026817.-	chr13	114026817	114026818	-	0	NA	Intergenic	AluSg|SINE|Alu	8354	NM_024719	79774	Hs.170904	NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
chr14.88199424.-	chr14	88199424	88199425	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260191	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr1.153961816.-	chr1	153961816	153961817	-	0	NA	Intergenic	AluY|SINE|Alu	1423	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr1.186364434.+	chr1	186364434	186364435	+	0	NA	"intron (NM_001164246, intron 8 of 12)"	AluY|SINE|Alu	-5270	NM_022375	10896	Hs.679230	NM_022375	ENSG00000262180	OCLM	TISR	oculomedin	protein-coding
chrM.6578.-	chrM	6578	6579	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.29030323.+	chr17	29030323	29030324	+	0	NA	Intergenic	AluSx|SINE|Alu	-6303	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
chr2.232202243.-	chr2	232202243	232202244	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25176	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr3.8635219.+	chr3	8635219	8635220	+	0	NA	Intergenic	Intergenic	21751	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr15.22938738.+	chr15	22938738	22938739	+	0	NA	"intron (NM_014608, intron 9 of 30)"	AluY|SINE|Alu	-17017	NM_001033028	23191	Hs.26704	NM_001033028	ENSG00000068793	CYFIP1	P140SRA-1|SHYC|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
chr3.174240475.+	chr3	174240475	174240476	+	0	NA	Intergenic	AluY|SINE|Alu	-336636	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr16.87826494.-	chr16	87826494	87826495	-	0	NA	Intergenic	AluJo|SINE|Alu	26896	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr2.88751673.-	chr2	88751673	88751674	-	0	NA	"exon (NM_001135649, exon 1 of 2)"	"exon (NM_001135649, exon 1 of 2)"	-380	NM_001135649	344167	Hs.716722	NM_001135649		FOXI3	-	forkhead box I3	protein-coding
chr12.33592849.+	chr12	33592849	33592850	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-95	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr7.330370.+	chr7	330370	330371	+	0	NA	"intron (NM_001195127, intron 1 of 2)"	CpG	234	NM_001195127	100288524	Hs.702860	NM_001195127		LOC100288524	-	forkhead box L1-like	protein-coding
chr16.70207334.+	chr16	70207334	70207335	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-594	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr2.10405947.-	chr2	10405947	10405948	-	0	NA	Intergenic	Intergenic	37083	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr10.11865375.-	chr10	11865375	11865376	-	0	NA	promoter-TSS (NM_153256)	promoter-TSS (NM_153256)	22	NM_153256	254427	Hs.435775	NM_153256	ENSG00000148426	PROSER2	C10orf47	proline and serine-rich protein 2	protein-coding
chr11.1158806.+	chr11	1158806	1158807	+	0	NA	Intergenic	Intergenic	83931	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr19.7198475.-	chr19	7198475	7198476	-	0	NA	"intron (NM_000208, intron 2 of 21)"	CpG	-95536	NM_001079817	3643	Hs.465744	NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
chr9.120507283.-	chr9	120507283	120507284	-	0	NA	Intergenic	CpG	-40830	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr7.2716284.-	chr7	2716284	2716285	-	0	NA	Intergenic	Intergenic	2879	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr2.43254211.-	chr2	43254211	43254212	-	0	NA	Intergenic	Intergenic	-199534	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr3.47744689.-	chr3	47744689	47744690	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78716	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr20.62108078.+	chr20	62108078	62108079	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4085	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr9.36859985.+	chr9	36859985	36859986	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4320	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr17.4708716.-	chr17	4708716	4708717	-	0	NA	Intergenic	AluSp|SINE|Alu	1680	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr10.4887147.-	chr10	4887147	4887148	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18778	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr5.2706252.+	chr5	2706252	2706253	+	0	NA	Intergenic	Intergenic	45517	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr17.74707084.+	chr17	74707084	74707085	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-28	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr1.46277304.-	chr1	46277304	46277305	-	0	NA	"intron (NM_015112, intron 1 of 28)"	AluY|SINE|Alu	-8019	NM_015112	23139	Hs.319481	NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
chr5.43563184.+	chr5	43563184	43563185	+	0	NA	Intergenic	AluSg|SINE|Alu	-5663	NM_183323	10605	Hs.482038	NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding
chr11.68704221.+	chr11	68704221	68704222	+	0	NA	"exon (NM_002180, exon 13 of 15)"	"exon (NM_002180, exon 13 of 15)"	32902	NM_002180	3508	Hs.503048	NM_002180	ENSG00000132740	IGHMBP2	CATF1|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7	immunoglobulin mu binding protein 2	protein-coding
chr5.36142985.-	chr5	36142985	36142986	-	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	-5105	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr7.45775956.-	chr7	45775956	45775957	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32661	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr8.144512843.+	chr8	144512843	144512844	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-241	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.4537739.-	chr16	4537739	4537740	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8120	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr10.59351286.+	chr10	59351286	59351287	+	0	NA	Intergenic	AluY|SINE|Alu	-286967	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr7.130418545.+	chr7	130418545	130418546	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	343	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr19.57585502.-	chr19	57585502	57585503	-	0	NA	Intergenic	Intergenic	46007	NM_020903	57663	Hs.515632	NM_020903	ENSG00000131864	USP29	HOM-TES-84/86	ubiquitin specific peptidase 29	protein-coding
chr1.156593689.+	chr1	156593689	156593690	+	0	NA	"exon (NM_021817, exon 4 of 7)"	"exon (NM_021817, exon 4 of 7)"	4603	NM_021817	60484	Hs.410719	NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
chr1.8021824.+	chr1	8021824	8021825	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	110	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr17.73636533.+	chr17	73636533	73636534	+	0	NA	"intron (NR_028439, intron 1 of 1)"	"intron (NR_028439, intron 1 of 1)"	3858	NR_028439	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr15.77590059.+	chr15	77590059	77590060	+	0	NA	"intron (NM_024776, intron 1 of 7)"	AluSc|SINE|Alu	-72313	NR_026813	81698	Hs.656938	NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	miscRNA
chr8.123636958.+	chr8	123636958	123636959	+	0	NA	Intergenic	AluSx|SINE|Alu	-156943	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr1.95195891.-	chr1	95195891	95195892	-	0	NA	Intergenic	AluY|SINE|Alu	90007	NM_001258343	126969	Hs.483423	NM_001114106	ENSG00000143036	SLC44A3	CTL3	"solute carrier family 44, member 3"	protein-coding
chr10.45240279.-	chr10	45240279	45240280	-	0	NA	Intergenic	AluSx1|SINE|Alu	166485	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr7.12751317.+	chr7	12751317	12751318	+	0	NA	Intergenic	AluY|SINE|Alu	24406	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr1.156527505.-	chr1	156527505	156527506	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14891	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr7.936432.-	chr7	936432	936433	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20241	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chrM.2987.-	chrM	2987	2988	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.38829879.+	chr9	38829879	38829880	+	0	NA	Intergenic	AluY|SINE|Alu	208794	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr2.109090604.+	chr2	109090604	109090605	+	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	25027	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr16.46387517.-	chr16	46387517	46387518	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215492	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr19.589053.-	chr19	589053	589054	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	840	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr21.43198262.-	chr21	43198262	43198263	-	0	NA	Intergenic	Intergenic	11013	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr13.21872281.+	chr13	21872281	21872282	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	17	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr19.48814071.+	chr19	48814071	48814072	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9261	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr15.74266289.-	chr15	74266289	74266290	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-18400	NM_001256675	9399	Hs.194816	NM_001256672	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
chr6.70692593.+	chr6	70692593	70692594	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116145	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr5.18111530.+	chr5	18111530	18111531	+	0	NA	Intergenic	AluY|SINE|Alu	-724111	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr8.104851149.+	chr8	104851149	104851150	+	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	19733	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr1.6320617.-	chr1	6320617	6320618	-	0	NA	"intron (NM_207370, intron 1 of 5)"	CpG	-418	NM_207370	387509	Hs.531581	NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
chr7.32427442.-	chr7	32427442	32427443	-	0	NA	Intergenic	SVA_E|Other|Other	-70664	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
chr16.10077563.-	chr16	10077563	10077564	-	0	NA	"intron (NM_001134408, intron 2 of 13)"	AluY|SINE|Alu	-198361	NM_001134408	2903	Hs.411472	NM_000833	ENSG00000183454	GRIN2A	EPND|GluN2A|NMDAR2A|NR2A	"glutamate receptor, ionotropic, N-methyl D-aspartate 2A"	protein-coding
chr18.60509754.+	chr18	60509754	60509755	+	0	NA	"intron (NM_194449, intron 3 of 16)"	AluSx|SINE|Alu	127082	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
chr3.36494715.-	chr3	36494715	36494716	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72618	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr16.87903507.+	chr16	87903507	87903508	+	0	NA	promoter-TSS (NM_003486)	promoter-TSS (NM_003486)	-407	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr21.46877807.+	chr21	46877807	46877808	+	0	NA	"intron (NM_030582, intron 1 of 41)"	"intron (NM_030582, intron 1 of 41)"	2383	NM_030582	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr18.34669430.+	chr18	34669430	34669431	+	0	NA	"intron (NM_020776, intron 7 of 9)"	AluSx|SINE|Alu	-260251	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr18.41408426.-	chr18	41408426	41408427	-	0	NA	Intergenic	AluSx3|SINE|Alu	550811	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr21.32930271.-	chr21	32930271	32930272	-	0	NA	"intron (NM_003253, intron 1 of 28)"	CpG	-1019	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr1.236252114.-	chr1	236252114	236252115	-	0	NA	Intergenic	Intergenic	23633	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr17.78977991.+	chr17	78977991	78977992	+	0	NA	Intergenic	CpG	12350	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr2.32250688.+	chr2	32250688	32250689	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14156	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr4.177146928.-	chr4	177146928	177146929	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30106	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr19.58276943.-	chr19	58276943	58276944	-	0	NA	Intergenic	AluSg|SINE|Alu	4077	NM_001204814	54807	Hs.625133	NM_001077426	ENSG00000083828	ZNF586	-	zinc finger protein 586	protein-coding
chr10.60208190.+	chr10	60208190	60208191	+	0	NA	Intergenic	LTR12C|LTR|ERV1	63287	NM_001270782	7019	Hs.594250	NM_001270782	ENSG00000108064	TFAM	MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	"transcription factor A, mitochondrial"	protein-coding
chr4.4873862.+	chr4	4873862	4873863	+	0	NA	Intergenic	MER96|DNA|hAT	12470	NM_002448	4487	Hs.424414	NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
chr1.145400433.-	chr1	145400433	145400434	-	0	NA	Intergenic	AluSq2|SINE|Alu	12758	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr4.3175587.+	chr4	3175587	3175588	+	0	NA	"intron (NM_002111, intron 31 of 66)"	AluY|SINE|Alu	-75180	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
chr12.90939933.-	chr12	90939933	90939934	-	0	NA	Intergenic	AluY|SINE|Alu	371867	NR_038868	439916	Hs.350600	NM_001039384	ENSG00000196243	LINC00615	C12orf37	long intergenic non-protein coding RNA 615	miscRNA
chr5.172522324.-	chr5	172522324	172522325	-	0	NA	"intron (NM_153607, intron 4 of 8)"	AluY|SINE|Alu	-38969	NM_153607	153222	Hs.484195	NM_001168393	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
chr8.143253375.-	chr8	143253375	143253376	-	0	NA	Intergenic	Intergenic	4325	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr7.36845265.+	chr7	36845265	36845266	+	0	NA	Intergenic	AluJb|SINE|Alu	-81111	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chrX.133564965.+	chrX	133564965	133564966	+	0	NA	Intergenic	AluSp|SINE|Alu	-29210	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chrX.112142842.+	chrX	112142842	112142843	+	0	NA	Intergenic	AluY|SINE|Alu	-58799	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr7.64199168.-	chr7	64199168	64199169	-	0	NA	Intergenic	SVA_D|Other|Other	55598	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chrX.32910799.+	chrX	32910799	32910800	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127518	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr6.142795167.+	chr6	142795167	142795168	+	0	NA	Intergenic	AluSc|SINE|Alu	163806	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr21.45243661.+	chr21	45243661	45243662	+	0	NA	Intergenic	Intergenic	-11213	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr22.51126240.-	chr22	51126240	51126241	-	0	NA	"intron (NM_033517, intron 9 of 21)"	AluY|SINE|Alu	-13170	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr12.120856939.-	chr12	120856939	120856940	-	0	NA	Intergenic	AluSz|SINE|Alu	18954	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr19.20713422.+	chr19	20713422	20713423	+	0	NA	Intergenic	SVA_D|Other|Other	35204	NM_001159293	100129842	Hs.515696	NM_001159293		ZNF737	ZNF102	zinc finger protein 737	protein-coding
chr12.109745214.-	chr12	109745214	109745215	-	0	NA	"intron (NM_213596, intron 2 of 9)"	"intron (NM_213596, intron 2 of 9)"	-1811	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
chr7.157253546.-	chr7	157253546	157253547	-	0	NA	Intergenic	AluSz|SINE|Alu	-113568	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr6.33806266.-	chr6	33806266	33806267	-	0	NA	Intergenic	Intergenic	34473	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr2.101214339.-	chr2	101214339	101214340	-	0	NA	Intergenic	AluY|SINE|Alu	-34921	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chrX.152916349.+	chrX	152916349	152916350	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8452	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr19.2716447.-	chr19	2716447	2716448	-	0	NA	"3' UTR (NM_145173, exon 2 of 2)"	"3' UTR (NM_145173, exon 2 of 2)"	-4943	NM_145173	148252	Hs.172753	NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	"DIRAS family, GTP-binding RAS-like 1"	protein-coding
chr2.128430614.+	chr2	128430614	128430615	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2150	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr6.33811436.+	chr6	33811436	33811437	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39643	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr4.17513789.+	chr4	17513789	17513790	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	68	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr8.141523835.+	chr8	141523835	141523836	+	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	1754	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr13.66584764.-	chr13	66584764	66584765	-	0	NA	Intergenic	AluY|SINE|Alu	814537	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr5.141451780.+	chr5	141451780	141451781	+	0	NA	Intergenic	AluSq|SINE|Alu	-36544	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr6.57322558.+	chr6	57322558	57322559	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140136	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr2.208031292.-	chr2	208031292	208031293	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-288	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr2.210074136.+	chr2	210074136	210074137	+	0	NA	Intergenic	CpG	-214635	NM_001039538	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr2.38191067.-	chr2	38191067	38191068	-	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	-13471	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr5.32209053.+	chr5	32209053	32209054	+	0	NA	Intergenic	SVA_F|Other|Other	-34628	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
chr7.66064150.+	chr7	66064150	66064151	+	0	NA	Intergenic	AluY|SINE|Alu	-20652	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr3.47865652.-	chr3	47865652	47865653	-	0	NA	"intron (NM_014966, intron 5 of 22)"	AluSx|SINE|Alu	-21253	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|RETCOR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding
chrX.20009159.+	chrX	20009159	20009160	+	0	NA	Intergenic	CpG	-1262	NR_024440	729609	Hs.554726	NR_024440		LOC729609	-	uncharacterized LOC729609	miscRNA
chr15.64013614.+	chr15	64013614	64013615	+	0	NA	"intron (NM_003922, intron 19 of 77)"	AluSx|SINE|Alu	112533	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
chr19.2400858.+	chr19	2400858	2400859	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11074	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr7.64198988.-	chr7	64198988	64198989	-	0	NA	Intergenic	SVA_D|Other|Other	55778	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr9.130734374.+	chr9	130734374	130734375	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8438	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr9.27529847.+	chr9	27529847	27529848	+	0	NA	promoter-TSS (NM_024761)	promoter-TSS (NM_024761)	3	NM_024761	79817	Hs.733701	NM_024761	ENSG00000120162	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
chr9.38705448.-	chr9	38705448	38705449	-	0	NA	Intergenic	AluY|SINE|Alu	-84363	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr2.159314748.+	chr2	159314748	159314749	+	0	NA	"intron (NM_001005476, intron 1 of 20)"	CpG	1272	NM_001005476	8502	Hs.407580	NM_001005476	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
chr19.23432230.+	chr19	23432230	23432231	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	942	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr1.110881140.+	chr1	110881140	110881141	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	653	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr16.67519988.+	chr16	67519988	67519989	+	0	NA	Intergenic	AluY|SINE|Alu	-2272	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr10.1114277.+	chr10	1114277	1114278	+	0	NA	"intron (NM_014023, intron 1 of 13)"	AluY|SINE|Alu	11501	NM_014023	22884	Hs.188495	NM_014023	ENSG00000047056	WDR37	RP11-529L18.2	WD repeat domain 37	protein-coding
chr17.72362420.+	chr17	72362420	72362421	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1225	NM_181790	350383	Hs.574368	NM_181790	ENSG00000257008	GPR142	PGR2	G protein-coupled receptor 142	protein-coding
chr1.145400527.-	chr1	145400527	145400528	-	0	NA	Intergenic	AluSx|SINE|Alu	12664	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr4.160748521.-	chr4	160748521	160748522	-	0	NA	Intergenic	AluSx1|SINE|Alu	-559523	NM_014247	9693	Hs.113912	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chr6.10694664.-	chr6	10694664	10694665	-	0	NA	promoter-TSS (NM_017906)	promoter-TSS (NM_017906)	-175	NR_026737	347744	Hs.61389	NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
chrX.117288397.+	chrX	117288397	117288398	+	0	NA	Intergenic	AluSc8|SINE|Alu	-37094	NM_001168301	90293	Hs.348262	NM_001168299	ENSG00000003096	KLHL13	BKLHD2	kelch-like family member 13	protein-coding
chr18.19172502.-	chr18	19172502	19172503	-	0	NA	"intron (NM_052911, intron 1 of 11)"	SVA_D|Other|Other	-8191	NM_052911	114799	Hs.464733	NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of cohesion 1 homolog 1 (S. cerevisiae)	protein-coding
chr21.35774211.+	chr21	35774211	35774212	+	0	NA	Intergenic	AluSc8|SINE|Alu	26462	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr20.60832368.+	chr20	60832368	60832369	+	0	NA	"intron (NM_014835, intron 2 of 13)"	"intron (NM_014835, intron 2 of 13)"	18788	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr19.3219072.-	chr19	3219072	3219073	-	0	NA	Intergenic	AluY|SINE|Alu	5629	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr2.24177945.-	chr2	24177945	24177946	-	0	NA	"intron (NM_181713, intron 1 of 6)"	AluSc5|SINE|Alu	-14569	NM_181713	165324	Hs.591576	NM_181713		UBXN2A	UBXD4	UBX domain protein 2A	protein-coding
chr6.33500275.-	chr6	33500275	33500276	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47795	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr8.141523840.-	chr8	141523840	141523841	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1759	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr6.108315247.+	chr6	108315247	108315248	+	0	NA	Intergenic	AluSz|SINE|Alu	-35765	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr3.194304678.-	chr3	194304678	194304679	-	0	NA	promoter-TSS (NR_047573)	promoter-TSS (NR_047573)	319	NR_047574	100507297	Hs.586059	NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	miscRNA
chr17.2726590.+	chr17	2726590	2726591	+	0	NA	"intron (NM_015085, intron 2 of 24)"	"intron (NM_015085, intron 2 of 24)"	26858	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr22.19172032.+	chr22	19172032	19172033	+	0	NA	"intron (NM_001835, intron 28 of 31)"	"intron (NM_001835, intron 28 of 31)"	-5694	NR_046298	6576	Hs.111024	NM_001256534	ENSG00000100075	SLC25A1	CTP|SEA|SLC20A3	"solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1"	protein-coding
chr2.55647028.+	chr2	55647028	55647029	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	29	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr9.105850363.+	chr9	105850363	105850364	+	0	NA	Intergenic	AluYc|SINE|Alu	92770	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr19.18006326.+	chr19	18006326	18006327	+	0	NA	TTS (NM_000453)	TTS (NM_000453)	23544	NM_000453	6528	Hs.584804	NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	"solute carrier family 5 (sodium iodide symporter), member 5"	protein-coding
chr6.46742411.-	chr6	46742411	46742412	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18683	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr7.54901692.-	chr7	54901692	54901693	-	0	NA	Intergenic	Intergenic	74753	NM_001012456	23480	Hs.488282	NM_001012456	ENSG00000132432	SEC61G	SSS1	Sec61 gamma subunit	protein-coding
chr14.105158951.+	chr14	105158951	105158952	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	3008	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr19.47364596.+	chr19	47364596	47364597	+	0	NA	Intergenic	Intergenic	-10393	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr19.59050237.-	chr19	59050237	59050238	-	0	NA	Intergenic	CpG	5599	NM_005762	10155	Hs.467408	NM_005762	ENSG00000130726	TRIM28	KAP1|RNF96|TF1B|TIF1B	tripartite motif containing 28	protein-coding
chr19.5409934.+	chr19	5409934	5409935	+	0	NA	Intergenic	AluY|SINE|Alu	-45492	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr18.77377002.-	chr18	77377002	77377003	-	0	NA	Intergenic	CpG	62799	NM_004715	9150	Hs.734021	NM_001202504	ENSG00000060069	CTDP1	CCFDN|FCP1	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1"	protein-coding
chr16.58767546.+	chr16	58767546	58767547	+	0	NA	"intron (NM_002080, intron 1 of 9)"	CpG	700	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr6.43016665.-	chr6	43016665	43016666	-	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	-5018	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr2.35387174.+	chr2	35387174	35387175	+	0	NA	Intergenic	AluY|SINE|Alu	1195539	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr4.56262307.-	chr4	56262307	56262308	-	0	NA	"non-coding (NR_073070, exon 1 of 7)"	"non-coding (NR_073070, exon 1 of 7)"	-227	NR_073070	55858	Hs.479766	NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|TMPT27|TPARL	transmembrane protein 165	protein-coding
chr2.239047915.-	chr2	239047915	239047916	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-552	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr5.180618863.+	chr5	180618863	180618864	+	0	NA	Intergenic	CpG	9067	NM_203297	81786	Hs.487412	NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
chr13.68791133.-	chr13	68791133	68791134	-	0	NA	Intergenic	AluY|SINE|Alu	-668324	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr1.106955149.+	chr1	106955149	106955150	+	0	NA	Intergenic	SVA_D|Other|Other	-644118	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
chr1.44220023.-	chr1	44220023	44220024	-	0	NA	"intron (NM_001270465, intron 2 of 7)"	AluSx1|SINE|Alu	-46819	NM_174967	6487	Hs.597915	NM_001270459	ENSG00000126091	ST3GAL3	EIEE15|MRT12|SIAT6|ST3GALII|ST3GalIII|ST3N	"ST3 beta-galactoside alpha-2,3-sialyltransferase 3"	protein-coding
chr5.178657970.+	chr5	178657970	178657971	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114461	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr10.134299997.+	chr10	134299997	134299998	+	0	NA	Intergenic	Intergenic	41283	NM_173541	170393	Hs.375059	NM_173541		C10orf91	RP11-432J24.4|bA432J24.4	chromosome 10 open reading frame 91	protein-coding
chr4.1541945.-	chr4	1541945	1541946	-	0	NA	Intergenic	Intergenic	-143773	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr2.204121232.+	chr2	204121232	204121233	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18068	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr4.85886936.-	chr4	85886936	85886937	-	0	NA	"intron (NM_014991, intron 1 of 67)"	CpG	-608	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr1.161879511.-	chr1	161879511	161879512	-	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	-114133	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr19.7426246.-	chr19	7426246	7426247	-	0	NA	Intergenic	AluSx|SINE|Alu	33753	NM_015318	23370	Hs.736818	NM_001130955	ENSG00000104880	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
chr1.150158674.-	chr1	150158674	150158675	-	0	NA	Intergenic	AluY|SINE|Alu	-36504	NM_016274	51177	Hs.438824	NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|OC120	"pleckstrin homology domain containing, family O member 1"	protein-coding
chr14.34667854.+	chr14	34667854	34667855	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247570	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr1.218165391.+	chr1	218165391	218165392	+	0	NA	Intergenic	AluSq|SINE|Alu	99149	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr7.130080931.-	chr7	130080931	130080932	-	0	NA	"non-coding (NR_046443, exon 1 of 11)"	"non-coding (NR_046443, exon 1 of 11)"	-120	NM_001257159	95681	Hs.368315	NM_001257158	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41kDa	protein-coding
chr7.56109599.+	chr7	56109599	56109600	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9669	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chrX.81762741.+	chrX	81762741	81762742	+	0	NA	Intergenic	AluY|SINE|Alu	-1000528	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr17.20588550.-	chr17	20588550	20588551	-	0	NA	Intergenic	SVA_D|Other|Other	27209	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr11.915984.+	chr11	915984	915985	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-926	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chrX.29584321.-	chrX	29584321	29584322	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649354	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr5.64398939.-	chr5	64398939	64398940	-	0	NA	Intergenic	CpG	-334184	NM_005869	10283	Hs.371372	NM_005869	ENSG00000153015	CWC27	NY-CO-10|SDCCAG10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
chr22.41215499.-	chr22	41215499	41215500	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	107	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr16.15528769.-	chr16	15528769	15528770	-	0	NA	"intron (NM_033201, intron 1 of 5)"	CpG	-444	NM_033201	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
chr2.109308548.+	chr2	109308548	109308549	+	0	NA	Intergenic	AluY|SINE|Alu	-27389	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr10.7626518.-	chr10	7626518	7626519	-	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	-35118	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr17.59482733.-	chr17	59482733	59482734	-	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	-5476	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr11.44361786.-	chr11	44361786	44361787	-	0	NA	Intergenic	AluJb|SINE|Alu	30070	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr14.76448884.-	chr14	76448884	76448885	-	0	NA	promoter-TSS (NM_003239)	promoter-TSS (NM_003239)	792	NM_003239	7043	Hs.592317	NM_003239		TGFB3	ARVD|TGF-beta3	"transforming growth factor, beta 3"	protein-coding
chr9.83940625.-	chr9	83940625	83940626	-	0	NA	Intergenic	AluY|SINE|Alu	-362971	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chrX.136083608.-	chrX	136083608	136083609	-	0	NA	Intergenic	SVA_D|Other|Other	-30225	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
chr10.20251640.-	chr10	20251640	20251641	-	0	NA	"intron (NM_032812, intron 1 of 13)"	"intron (NM_032812, intron 1 of 13)"	-146268	NM_032812	84898	Hs.658134	NM_032812	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
chr20.42218550.+	chr20	42218550	42218551	+	0	NA	Intergenic	AluJb|SINE|Alu	-1029	NM_016004	51098	Hs.444332	NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1	intraflagellar transport 52 homolog (Chlamydomonas)	protein-coding
chr8.6644891.+	chr8	6644891	6644892	+	0	NA	Intergenic	AluY|SINE|Alu	-42130	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr11.5315858.+	chr11	5315858	5315859	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7318	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr13.108435249.+	chr13	108435249	108435250	+	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	84211	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr8.20770509.-	chr8	20770509	20770510	-	0	NA	Intergenic	Intergenic	60988	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr5.27909123.+	chr5	27909123	27909124	+	0	NA	Intergenic	AluY|SINE|Alu	436724	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chrX.133565019.+	chrX	133565019	133565020	+	0	NA	Intergenic	AluSp|SINE|Alu	-29156	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr17.47811679.-	chr17	47811679	47811680	-	0	NA	"intron (NM_030802, intron 1 of 7)"	AluYk4|SINE|Alu	26397	NM_005827	10237	Hs.154073	NM_005827		SLC35B1	UGTREL1	"solute carrier family 35, member B1"	protein-coding
chr9.719232.-	chr9	719232	719233	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12426	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr13.41345828.-	chr13	41345828	41345829	-	0	NA	promoter-TSS (NM_005830)	promoter-TSS (NM_005830)	481	NM_005830	10240	Hs.596607	NM_005830	ENSG00000102738	MRPS31	IMOGN38|MRP-S31|S31mt	mitochondrial ribosomal protein S31	protein-coding
chr9.111476092.+	chr9	111476092	111476093	+	0	NA	Intergenic	L1PA7|LINE|L1	142183	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr1.228427852.-	chr1	228427852	228427853	-	0	NA	"intron (NM_001271223, intron 10 of 115)"	AluY|SINE|Alu	26487	NR_073154	574407	Hs.650039	NM_001025495	ENSG00000162913	C1orf145	-	chromosome 1 open reading frame 145	miscRNA
chr16.81282919.-	chr16	81282919	81282920	-	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	-10623	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr2.239959403.-	chr2	239959403	239959404	-	0	NA	Intergenic	MER74A|LTR|ERVL	-31207	NR_039642	100616397		NR_039642		MIR4440	-	microRNA 4440	miscRNA
chr19.24186678.+	chr19	24186678	24186679	+	0	NA	Intergenic	Intergenic	-83298	NM_203282	9534	Hs.729302	NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
chr5.87971645.+	chr5	87971645	87971646	+	0	NA	"intron (NR_015436, intron 1 of 4)"	CpG	-2499	NR_024384	645323	Hs.744298	NR_015436	ENSG00000245526	LINC00461	-	long intergenic non-protein coding RNA 461	miscRNA
chr2.95885010.+	chr2	95885010	95885011	+	0	NA	Intergenic	AluY|SINE|Alu	53827	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr2.48776768.-	chr2	48776768	48776769	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	19391	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr13.21872268.-	chr13	21872268	21872269	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-4	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr7.5251988.+	chr7	5251988	5251989	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	"intron (NM_001033519, intron 2 of 11)"	-1912	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr19.47364611.+	chr19	47364611	47364612	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10408	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr7.158670982.-	chr7	158670982	158670983	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21713	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr1.2157797.-	chr1	2157797	2157798	-	0	NA	Intergenic	AluJb|SINE|Alu	2337	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr1.114299517.+	chr1	114299517	114299518	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2260	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr5.116126630.+	chr5	116126630	116126631	+	0	NA	Intergenic	AluY|SINE|Alu	-216079	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr16.11746961.-	chr16	11746961	11746962	-	0	NA	Intergenic	AluSx1|SINE|Alu	15328	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr3.50701732.-	chr3	50701732	50701733	-	0	NA	Intergenic	AluY|SINE|Alu	10779	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr10.135075410.-	chr10	135075410	135075411	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14286	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr15.69859913.+	chr15	69859913	69859914	+	0	NA	"intron (NR_026979, intron 4 of 4)"	LTR12C|LTR|ERV1	5854	NR_026979	145837	Hs.737088	NR_026979		LOC145837	-	uncharacterized LOC145837	miscRNA
chr8.609248.-	chr8	609248	609249	-	0	NA	Intergenic	Intergenic	-71978	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr11.64774850.+	chr11	64774850	64774851	+	0	NA	Intergenic	AluSz|SINE|Alu	-6735	NM_001667	402	Hs.502836	NM_001199745	ENSG00000213465	ARL2	ARFL2	ADP-ribosylation factor-like 2	protein-coding
chr16.46387520.-	chr16	46387520	46387521	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215489	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr5.39649196.+	chr5	39649196	39649197	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223861	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr16.5016343.+	chr16	5016343	5016344	+	0	NA	"intron (NM_014692, intron 2 of 15)"	AluSx1|SINE|Alu	8025	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14-like 5 (S. cerevisiae)	protein-coding
chr13.114525876.-	chr13	114525876	114525877	-	0	NA	"intron (NM_001143945, intron 7 of 8)"	"intron (NM_001143945, intron 7 of 8)"	-7293	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	miscRNA
chr12.100804230.-	chr12	100804230	100804231	-	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	-53373	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr7.45125727.+	chr7	45125727	45125728	+	0	NA	"intron (NM_001146334, intron 1 of 7)"	"intron (NM_001146334, intron 1 of 7)"	2766	NM_001146334	23148	Hs.96633	NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
chr10.22126989.-	chr10	22126989	22126990	-	0	NA	"intron (NM_022365, intron 8 of 11)"	SVA_C|Other|Other	-165661	NM_022365	64215	Hs.499000	NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	"DnaJ (Hsp40) homolog, subfamily C, member 1"	protein-coding
chr5.175488232.+	chr5	175488232	175488233	+	0	NA	Intergenic	CpG	-2480	NM_001265615	202134	Hs.368516	NM_001079529	ENSG00000182230	FAM153B	-	"family with sequence similarity 153, member B"	protein-coding
chr7.158268154.+	chr7	158268154	158268155	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57351	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr12.112407430.+	chr12	112407430	112407431	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43593	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr14.55349957.-	chr14	55349957	55349958	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5046	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr3.196045132.-	chr3	196045132	196045133	-	0	NA	promoter-TSS (NM_152773)	promoter-TSS (NM_152773)	-33	NM_152773	255758	Hs.733180	NM_152773	ENSG00000213123	TCTEX1D2	-	Tctex1 domain containing 2	protein-coding
chr6.33811475.-	chr6	33811475	33811476	-	0	NA	Intergenic	LTR33|LTR|ERVL	39682	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr6.160985695.-	chr6	160985695	160985696	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53539	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr11.31560734.-	chr11	31560734	31560735	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29437	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr2.222297743.+	chr2	222297743	222297744	+	0	NA	"intron (NM_004438, intron 14 of 17)"	AluSx3|SINE|Alu	139267	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
chr20.3748538.-	chr20	3748538	3748539	-	0	NA	promoter-TSS (NM_001258429)	promoter-TSS (NM_001258429)	86	NM_001258430	54976	Hs.274422	NM_017874	ENSG00000101220	C20orf27	-	chromosome 20 open reading frame 27	protein-coding
chr6.158844880.+	chr6	158844880	158844881	+	0	NA	"intron (NM_001007466, intron 2 of 12)"	AluY|SINE|Alu	111188	NM_020245	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr16.31103081.+	chr16	31103081	31103082	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2951	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr7.158504080.+	chr7	158504080	158504081	+	0	NA	Intergenic	AluY|SINE|Alu	-6560	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr1.7130029.+	chr1	7130029	7130030	+	0	NA	"intron (NM_015215, intron 3 of 22)"	"intron (NM_015215, intron 3 of 22)"	284645	NR_038934	23261	Hs.671020	NM_001195563		CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
chr9.14978504.+	chr9	14978504	14978505	+	0	NA	Intergenic	CpG	-14821	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
chr19.39126970.-	chr19	39126970	39126971	-	0	NA	"intron (NM_013234, intron 7 of 7)"	"intron (NM_013234, intron 7 of 7)"	11297	NM_004924	81	Hs.731775	NM_004924		ACTN4	ACTININ-4|FSGS|FSGS1	"actinin, alpha 4"	protein-coding
chr4.63837269.+	chr4	63837269	63837270	+	0	NA	Intergenic	LTR17|LTR|ERV1	1437909	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr19.12606192.-	chr19	12606192	12606193	-	0	NA	Intergenic	CpG	10560	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr9.105850357.-	chr9	105850357	105850358	-	0	NA	Intergenic	AluYc|SINE|Alu	-92764	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr7.5610944.-	chr7	5610944	5610945	-	0	NA	Intergenic	AluSx1|SINE|Alu	21492	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr2.120775618.+	chr2	120775618	120775619	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4833	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr16.8162698.+	chr16	8162698	8162699	+	0	NA	Intergenic	AluY|SINE|Alu	459528	NM_001146336	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
chrM.9156.+	chrM	9156	9157	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.937269.-	chr1	937269	937270	-	0	NA	Intergenic	CpG-24	1717	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr10.108027494.-	chr10	108027494	108027495	-	0	NA	Intergenic	LTR1D|LTR|ERV1	-896972	NM_001206570	114815	Hs.591915	NM_001013031	ENSG00000108018	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chr3.72889325.-	chr3	72889325	72889326	-	0	NA	"intron (NM_018130, intron 4 of 10)"	AluSx1|SINE|Alu	-8273	NM_018130	55164	Hs.606584	NM_018130	ENSG00000144736	SHQ1	Shq1p	"SHQ1, H/ACA ribonucleoprotein assembly factor"	protein-coding
chr19.18180410.+	chr19	18180410	18180411	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17287	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr1.156527506.-	chr1	156527506	156527507	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14890	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr12.58059381.-	chr12	58059381	58059382	-	0	NA	Intergenic	SVA_A|Other|Other	28357	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr1.1077267.-	chr1	1077267	1077268	-	0	NA	"intron (NR_038869, intron 2 of 2)"	"intron (NR_038869, intron 2 of 2)"	-4870	NR_038869	254099	Hs.680488	NR_038869	ENSG00000223823	LOC254099	-	uncharacterized LOC254099	miscRNA
chr17.6679385.+	chr17	6679385	6679386	+	0	NA	promoter-TSS (NM_153230)	promoter-TSS (NM_153230)	-167	NM_153230	162517	Hs.368364	NM_153230	ENSG00000177294	FBXO39	Fbx39	F-box protein 39	protein-coding
chr2.237068235.+	chr2	237068235	237068236	+	0	NA	Intergenic	CpG	8417	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr17.38599794.-	chr17	38599794	38599795	-	0	NA	"5' UTR (NM_001552, exon 1 of 4)"	"5' UTR (NM_001552, exon 1 of 4)"	-118	NM_001552	3487	Hs.462998	NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding
chr11.2213887.-	chr11	2213887	2213888	-	0	NA	Intergenic	Intergenic	-19594	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr22.46326781.-	chr22	46326781	46326782	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46227	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chrX.53111627.-	chrX	53111627	53111628	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-85	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.38836195.-	chr19	38836195	38836196	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9752	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr13.53024281.+	chr13	53024281	53024282	+	0	NA	"intron (NM_016075, intron 1 of 13)"	CpG	482	NM_016075	51028	Hs.109520	NM_016075	ENSG00000136100	VPS36	C13orf9|EAP45	vacuolar protein sorting 36 homolog (S. cerevisiae)	protein-coding
chr6.1604605.-	chr6	1604605	1604606	-	0	NA	Intergenic	Intergenic	6076	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr3.1900254.-	chr3	1900254	1900255	-	0	NA	Intergenic	AluSp|SINE|Alu	240296	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr5.3764238.+	chr5	3764238	3764239	+	0	NA	Intergenic	Intergenic	168070	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr15.55741327.+	chr15	55741327	55741328	+	0	NA	"intron (NR_037923, intron 5 of 15)"	AluSq2|SINE|Alu	40604	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr10.64708102.-	chr10	64708102	64708103	-	0	NA	Intergenic	SVA_E|Other|Other	129175	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr15.102042161.-	chr15	102042161	102042162	-	0	NA	Intergenic	Intergenic	11974	NM_138322	5046	Hs.665989	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
chr15.77590058.+	chr15	77590058	77590059	+	0	NA	"intron (NM_024776, intron 1 of 7)"	AluSc|SINE|Alu	-72312	NR_026813	81698	Hs.656938	NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	miscRNA
chr15.41613127.-	chr15	41613127	41613128	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11692	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr22.50894873.+	chr22	50894873	50894874	+	0	NA	"intron (NM_002972, intron 30 of 40)"	"intron (NM_002972, intron 30 of 40)"	18591	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr14.105134381.-	chr14	105134381	105134382	-	0	NA	Intergenic	AluSz|SINE|Alu	-9705	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chrX.40934656.-	chrX	40934656	40934657	-	0	NA	Intergenic	AluJo|SINE|Alu	10232	NM_001039590	8239	Hs.77578	NM_001039590		USP9X	DFFRX|FAF|FAM	"ubiquitin specific peptidase 9, X-linked"	protein-coding
chr17.8061093.+	chr17	8061093	8061094	+	0	NA	Intergenic	AluSx|SINE|Alu	5200	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chrX.122993615.-	chrX	122993615	122993616	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	47	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chrX.125299937.+	chrX	125299937	125299938	+	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	143	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr17.18179005.-	chr17	18179005	18179006	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14581	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr2.4156393.-	chr2	4156393	4156394	-	0	NA	Intergenic	CpG	134771	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr22.22550451.-	chr22	22550451	22550452	-	0	NA	Intergenic	Intergenic	48749	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr2.64811865.+	chr2	64811865	64811866	+	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	-22581	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr5.179167529.+	chr5	179167529	179167530	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	7678	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr9.137200963.-	chr9	137200963	137200964	-	0	NA	Intergenic	Intergenic	17353	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr15.75182436.-	chr15	75182436	75182437	-	0	NA	promoter-TSS (NM_002435)	promoter-TSS (NM_002435)	-26	NM_002435	4351	Hs.75694	NM_002435	ENSG00000178802	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
chr13.20343675.+	chr13	20343675	20343676	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13484	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr3.23739034.+	chr3	23739034	23739035	+	0	NA	Intergenic	Intergenic	-108350	NM_182666	7324	Hs.164853	NM_001202476	ENSG00000170142	UBE2E1	UBCH6	ubiquitin-conjugating enzyme E2E 1	protein-coding
chr19.13497350.+	chr19	13497350	13497351	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119924	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr1.114299538.-	chr1	114299538	114299539	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2239	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr19.18057788.+	chr19	18057788	18057789	+	0	NA	Intergenic	AluSx|SINE|Alu	-4323	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr2.242447219.+	chr2	242447219	242447220	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	556	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr12.124780028.-	chr12	124780028	124780029	-	0	NA	"intron (NM_181709, intron 1 of 2)"	"intron (NM_181709, intron 1 of 2)"	-6318	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	FAM101A	-	"family with sequence similarity 101, member A"	protein-coding
chr6.24720974.+	chr6	24720974	24720975	+	0	NA	Intergenic	CpG	-1571	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr4.8629227.+	chr4	8629227	8629228	+	0	NA	Intergenic	AluSx1|SINE|Alu	34840	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr22.47452204.+	chr22	47452204	47452205	+	0	NA	"intron (NM_014346, intron 11 of 12)"	"intron (NM_014346, intron 11 of 12)"	293686	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr21.25581305.-	chr21	25581305	25581306	-	0	NA	Intergenic	LTR12C|LTR|ERV1	631559	NR_046198	339622	Hs.616316	NR_046198	ENSG00000226983	LOC339622	-	uncharacterized LOC339622	miscRNA
chr19.23375413.-	chr19	23375413	23375414	-	0	NA	Intergenic	Intergenic	-57759	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr9.135013582.-	chr9	135013582	135013583	-	0	NA	Intergenic	AluSz|SINE|Alu	23752	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr10.14719526.+	chr10	14719526	14719527	+	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	97370	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr3.46792301.+	chr3	46792301	46792302	+	0	NA	Intergenic	CpG	-6056	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr11.118672122.+	chr11	118672122	118672123	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10150	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr8.6812643.+	chr8	6812643	6812644	+	0	NA	Intergenic	AluSp|SINE|Alu	-3522	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr4.177147003.-	chr4	177147003	177147004	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30181	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr18.48637418.-	chr18	48637418	48637419	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-80835	NM_005359	4089	Hs.75862	NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
chr19.2276473.-	chr19	2276473	2276474	-	0	NA	"exon (NM_198532, exon 4 of 4)"	"exon (NM_198532, exon 4 of 4)"	-5708	NM_198532	374872	Hs.511803	NM_198532	ENSG00000188305	C19orf35	-	chromosome 19 open reading frame 35	protein-coding
chr13.81972933.+	chr13	81972933	81972934	+	0	NA	Intergenic	AluY|SINE|Alu	-1057847	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr9.38829875.+	chr9	38829875	38829876	+	0	NA	Intergenic	AluY|SINE|Alu	208790	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr1.17265609.+	chr1	17265609	17265610	+	0	NA	"exon (NM_014675, exon 12 of 37)"	"exon (NM_014675, exon 12 of 37)"	17164	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr12.34191954.+	chr12	34191954	34191955	+	0	NA	Intergenic	AluSp|SINE|Alu	16738	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr18.70534379.+	chr18	70534379	70534380	+	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	431	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr4.163164048.+	chr4	163164048	163164049	+	0	NA	Intergenic	AluY|SINE|Alu	-78862	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr19.52932501.-	chr19	52932501	52932502	-	0	NA	Intergenic	Intergenic	2166	NM_001143939	147658	Hs.447583	NM_182512	ENSG00000198633	ZNF534	KRBO3	zinc finger protein 534	protein-coding
chr7.5251987.+	chr7	5251987	5251988	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	"intron (NM_001033519, intron 2 of 11)"	-1913	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr4.6084858.-	chr4	6084858	6084859	-	0	NA	"intron (NM_001099433, intron 5 of 20)"	AluSx1|SINE|Alu	-117460	NM_001099433	152789	Hs.479066	NM_001099433	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
chr2.25757612.-	chr2	25757612	25757613	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-115479	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr2.38825118.+	chr2	38825118	38825119	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5060	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr1.204093951.+	chr1	204093951	204093952	+	0	NA	"exon (NM_005686, exon 13 of 14)"	"exon (NM_005686, exon 13 of 14)"	27356	NM_018208	55224	Hs.497469	NM_018208	ENSG00000143845	ETNK2	EKI2|HMFT1716	ethanolamine kinase 2	protein-coding
chr5.36143016.-	chr5	36143016	36143017	-	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	-5074	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr6.26865719.+	chr6	26865719	26865720	+	0	NA	"intron (NR_003504, intron 3 of 8)"	"intron (NR_003504, intron 3 of 8)"	58614	NR_003504	387036	Hs.675815	NM_001033523	ENSG00000241549	GUSBP2	GUSBL1|GUSBP4|SMA3-L|SMAC3L|SMAC3L2|b55C20.1|bA239L20.1|bA239L20.5|bGLU-Lp	"glucuronidase, beta pseudogene 2"	pseudo
chr10.135270892.-	chr10	135270892	135270893	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3460	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr18.33543852.+	chr18	33543852	33543853	+	0	NA	Intergenic	AluY|SINE|Alu	-8736	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr5.171395366.-	chr5	171395366	171395367	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38511	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr6.127845949.+	chr6	127845949	127845950	+	0	NA	Intergenic	AluY|SINE|Alu	-5449	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr5.180198326.-	chr5	180198326	180198327	-	0	NA	Intergenic	SVA_D|Other|Other	31268	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr12.112857347.-	chr12	112857347	112857348	-	0	NA	"intron (NM_002834, intron 1 of 15)"	"intron (NM_002834, intron 1 of 15)"	-811	NM_002834	5781	Hs.506852	NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	"protein tyrosine phosphatase, non-receptor type 11"	protein-coding
chr14.71374362.+	chr14	71374362	71374363	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	240	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr9.138662458.-	chr9	138662458	138662459	-	0	NA	"intron (NM_001272003, intron 16 of 30)"	"intron (NM_001272003, intron 16 of 30)"	-68427	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr2.239758082.+	chr2	239758082	239758083	+	0	NA	"intron (NM_001271893, intron 1 of 1)"	CpG-16158	1409	NM_001271893	117581	Hs.422585	NM_001271893	ENSG00000233608	TWIST2	DERMO1|FFDD3|SETLSS|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding
chr4.188471123.-	chr4	188471123	188471124	-	0	NA	Intergenic	AluSg|SINE|Alu	44356	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr11.16894091.+	chr11	16894091	16894092	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133943	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr14.105158952.+	chr14	105158952	105158953	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	3009	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr17.71398376.+	chr17	71398376	71398377	+	0	NA	"intron (NM_001144952, intron 18 of 44)"	"intron (NM_001144952, intron 18 of 44)"	-90233	NM_012121	23580	Hs.3903	NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
chr16.85793613.+	chr16	85793613	85793614	+	0	NA	Intergenic	Intergenic	-8924	NM_206967	404550	Hs.461655	NM_206967	ENSG00000154102	C16orf74	-	chromosome 16 open reading frame 74	protein-coding
chr22.40851515.-	chr22	40851515	40851516	-	0	NA	"intron (NM_020831, intron 4 of 14)"	AluY|SINE|Alu	-84920	NM_015705	27352	Hs.474914	NM_015705	ENSG00000100359	SGSM3	MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5	small G protein signaling modulator 3	protein-coding
chr3.36421962.-	chr3	36421962	36421963	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	135	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr7.155246419.-	chr7	155246419	155246420	-	0	NA	Intergenic	CpG	4405	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chrX.71471026.+	chrX	71471026	71471027	+	0	NA	"intron (NM_001170747, intron 3 of 3)"	AluY|SINE|Alu	-12168	NM_017669	54821	Hs.47558	NM_001009954	ENSG00000186871	ERCC6L	PICH|RAD26L	"excision repair cross-complementing rodent repair deficiency, complementation group 6-like"	protein-coding
chr17.4487638.-	chr17	4487638	4487639	-	0	NA	promoter-TSS (NM_001114974)	promoter-TSS (NM_001114974)	196	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr1.84326529.-	chr1	84326529	84326530	-	0	NA	"intron (NR_049805, intron 3 of 4)"	CpG	-52530	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	miscRNA
chr4.185174142.+	chr4	185174142	185174143	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35028	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr13.21872308.-	chr13	21872308	21872309	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-44	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr11.67345206.+	chr11	67345206	67345207	+	0	NA	Intergenic	Intergenic	-5860	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr8.100115814.+	chr8	100115814	100115815	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90320	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr1.163468702.-	chr1	163468702	163468703	-	0	NA	Intergenic	SVA_A|Other|Other	-176979	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr7.148597565.+	chr7	148597565	148597566	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16124	NM_001203247	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr8.26486422.+	chr8	26486422	26486423	+	0	NA	"intron (NM_001244604, intron 7 of 13)"	"intron (NM_001244604, intron 7 of 13)"	50501	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr17.12456668.-	chr17	12456668	12456669	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3383	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr3.60261918.-	chr3	60261918	60261919	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluY|SINE|Alu	-975215	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr10.121799458.+	chr10	121799458	121799459	+	0	NA	Intergenic	AluSz6|SINE|Alu	81433	NR_039830	100616322		NR_039830	ENSG00000265370	MIR4682	-	microRNA 4682	miscRNA
chr9.14830624.-	chr9	14830624	14830625	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51093	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr15.90792657.+	chr15	90792657	90792658	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-107	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr16.412623.-	chr16	412623	412624	-	0	NA	Intergenic	Intergenic	-7946	NM_006428	10573	Hs.513230	NM_006428	ENSG00000086504	MRPL28	MAAT1|p15	mitochondrial ribosomal protein L28	protein-coding
chr20.34893942.+	chr20	34893942	34893943	+	0	NA	Intergenic	CpG	69603	NM_001271874	25980	Hs.744306	NM_001271874	ENSG00000131043	AAR2	C20orf4	AAR2 splicing factor homolog (S. cerevisiae)	protein-coding
chr9.138065692.-	chr9	138065692	138065693	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7763	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr19.15718054.-	chr19	15718054	15718055	-	0	NA	Intergenic	AluY|SINE|Alu	7975	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr8.6651230.+	chr8	6651230	6651231	+	0	NA	Intergenic	AluSx|SINE|Alu	-41846	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	LOC100652791	-	uncharacterized LOC100652791	miscRNA
chr2.170684196.-	chr2	170684196	170684197	-	0	NA	"exon (NM_172070, exon 1 of 39)"	"exon (NM_172070, exon 1 of 39)"	-178	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr3.13876362.-	chr3	13876362	13876363	-	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	-45256	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr7.66479980.-	chr7	66479980	66479981	-	0	NA	"intron (NM_018264, intron 5 of 15)"	"intron (NM_018264, intron 5 of 15)"	-18188	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr16.18813202.+	chr16	18813202	18813203	+	0	NA	promoter-TSS (NM_015161)	promoter-TSS (NM_015161)	-345	NM_015161	23204	Hs.634882	NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding
chr19.35368083.-	chr19	35368083	35368084	-	0	NA	Intergenic	AluY|SINE|Alu	-21764	NR_046222	100652909	Hs.374015	NR_046222		LOC100652909	-	uncharacterized LOC100652909	miscRNA
chr10.65193045.-	chr10	65193045	65193046	-	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSp|SINE|Alu	31944	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr13.72731942.+	chr13	72731942	72731943	+	0	NA	Intergenic	AluY|SINE|Alu	-290612	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr20.18441242.+	chr20	18441242	18441243	+	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	6587	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr8.41182858.-	chr8	41182858	41182859	-	0	NA	Intergenic	Intergenic	15868	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr10.105293313.-	chr10	105293313	105293314	-	0	NA	"intron (NM_004210, intron 1 of 5)"	AluY|SINE|Alu	-39578	NM_004210	9148	Hs.594708	NM_004210	ENSG00000107954	NEURL	NEURL1|RNF67|bA416N2.1|neu|neu-1	neuralized homolog (Drosophila)	protein-coding
chr20.33005283.+	chr20	33005283	33005284	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48847	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr1.201617415.+	chr1	201617415	201617416	+	0	NA	promoter-TSS (NM_020443)	promoter-TSS (NM_020443)	-35	NM_020443	89796	Hs.585374	NM_001167738	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
chr2.168149643.+	chr2	168149643	168149644	+	0	NA	Intergenic	CpG	105850	NM_001199145	129446	Hs.73680	NM_001079810	ENSG00000163092	XIRP2	CMYA3	xin actin-binding repeat containing 2	protein-coding
chr18.19632310.-	chr18	19632310	19632311	-	0	NA	Intergenic	AluSg4|SINE|Alu	117094	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr2.48776674.-	chr2	48776674	48776675	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	-19366	NM_006873	11037	Hs.736128	NM_001198595	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
chr19.23432223.+	chr19	23432223	23432224	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	949	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr4.2878516.+	chr4	2878516	2878517	+	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	32932	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr11.61487844.-	chr11	61487844	61487845	-	0	NA	"intron (NM_006133, intron 2 of 19)"	"intron (NM_006133, intron 2 of 19)"	32277	NM_001127392	745	Hs.473109	NM_001127392	ENSG00000124920	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
chr7.1570437.-	chr7	1570437	1570438	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-69	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr11.47914411.+	chr11	47914411	47914412	+	0	NA	Intergenic	SVA_B|Other|Other	-44354	NM_015231	23279	Hs.744107	NM_015231	ENSG00000030066	NUP160	-	nucleoporin 160kDa	protein-coding
chr3.3168581.-	chr3	3168581	3168582	-	0	NA	promoter-TSS (NM_182916)	promoter-TSS (NM_182916)	19	NM_182916	51095	Hs.732725	NM_016000	ENSG00000072756	TRNT1	CCA1|MtCCA	"tRNA nucleotidyl transferase, CCA-adding, 1"	protein-coding
chr19.18416214.-	chr19	18416214	18416215	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17787	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr14.90564840.+	chr14	90564840	90564841	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSc8|SINE|Alu	36732	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr2.158052756.-	chr2	158052756	158052757	-	0	NA	Intergenic	AluYk4|SINE|Alu	61584	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr2.136064061.+	chr2	136064061	136064062	+	0	NA	"intron (NM_032143, intron 8 of 20)"	AluY|SINE|Alu	224745	NM_032143	84083	Hs.658422	NM_032143	ENSG00000121988	ZRANB3	4933425L19Rik|AH2	"zinc finger, RAN-binding domain containing 3"	protein-coding
chr1.21892937.+	chr1	21892937	21892938	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57079	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr9.95546743.-	chr9	95546743	95546744	-	0	NA	Intergenic	AluY|SINE|Alu	19660	NM_001003800	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr1.113336900.-	chr1	113336900	113336901	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73711	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr1.7831801.-	chr1	7831801	7831802	-	0	NA	"intron (NM_004781, intron 1 of 4)"	CpG	-472	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr4.6946504.-	chr4	6946504	6946505	-	0	NA	"intron (NM_020773, intron 2 of 13)"	"intron (NM_020773, intron 2 of 13)"	-35009	NM_020773	57533	Hs.518611	NM_001113361	ENSG00000132405	TBC1D14	-	"TBC1 domain family, member 14"	protein-coding
chr2.170666407.-	chr2	170666407	170666408	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11085	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr3.49711692.+	chr3	49711692	49711693	+	0	NA	"5' UTR (NM_001640, exon 1 of 22)"	"5' UTR (NM_001640, exon 1 of 22)"	257	NM_001640	327	Hs.517969	NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	N-acylaminoacyl-peptide hydrolase	protein-coding
chr22.50871760.-	chr22	50871760	50871761	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41704	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr19.23474376.+	chr19	23474376	23474377	+	0	NA	Intergenic	AluSx|SINE|Alu	-41204	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr2.1562092.-	chr2	1562092	1562093	-	0	NA	Intergenic	AluY|SINE|Alu	-143912	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr14.84437078.+	chr14	84437078	84437079	+	0	NA	Intergenic	AluY|SINE|Alu	-1559410	NM_013231	23768	Hs.744139	NM_013231	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chr9.113201942.-	chr9	113201942	113201943	-	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	101817	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chr10.86201672.-	chr10	86201672	86201673	-	0	NA	"intron (NM_018999, intron 6 of 10)"	AluY|SINE|Alu	-113262	NM_018999	54462	Hs.461988	NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
chr19.1483120.+	chr19	1483120	1483121	+	0	NA	"intron (NM_017573, intron 12 of 14)"	CpG-12263	-3892	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
chr15.52029761.-	chr15	52029761	52029762	-	0	NA	"exon (NM_153374, exon 1 of 3)"	"exon (NM_153374, exon 1 of 3)"	-559	NM_153374	256586	Hs.603629	NM_001143917	ENSG00000140280	LYSMD2	-	"LysM, putative peptidoglycan-binding, domain containing 2"	protein-coding
chr19.8478188.+	chr19	8478188	8478189	+	0	NA	promoter-TSS (NM_001005416)	promoter-TSS (NM_001005416)	1	NM_016496	51257	Hs.631861	NM_001005415	ENSG00000099785	Mar-02	MARCH-II|RNF172	"membrane-associated ring finger (C3HC4) 2, E3 ubiquitin protein ligase"	protein-coding
chr2.242500494.+	chr2	242500494	242500495	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1936	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr9.136672365.-	chr9	136672365	136672366	-	0	NA	"intron (NM_001134398, intron 8 of 29)"	"intron (NM_001134398, intron 8 of 29)"	67288	NM_007101	1757	Hs.198003	NM_001134707	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
chr19.11104347.+	chr19	11104347	11104348	+	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	9519	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr17.79089805.-	chr17	79089805	79089806	-	0	NA	"3' UTR (NM_001144888, exon 14 of 14)"	"3' UTR (NM_001144888, exon 14 of 14)"	-9368	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr15.91370887.-	chr15	91370887	91370888	-	0	NA	Intergenic	AluSz|SINE|Alu	40998	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr9.26387255.-	chr9	26387255	26387256	-	0	NA	Intergenic	AluY|SINE|Alu	-320582	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr3.51705365.+	chr3	51705365	51705366	+	0	NA	promoter-TSS (NM_001243725)	promoter-TSS (NM_001243725)	75	NM_001243725	51368	Hs.517864	NM_001129884	ENSG00000164081	TEX264	SIG11|ZSIG11	testis expressed 264	protein-coding
chr19.33557621.+	chr19	33557621	33557622	+	0	NA	Intergenic	Intergenic	-1797	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr16.73461736.-	chr16	73461736	73461737	-	0	NA	Intergenic	AluSg|SINE|Alu	-41032	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr6.35027147.+	chr6	35027147	35027148	+	0	NA	"intron (NM_015245, intron 12 of 23)"	"intron (NM_015245, intron 12 of 23)"	82040	NM_001261818	6954	Hs.435371	NM_001093728	ENSG00000124678	TCP11	D6S230E|FPPR	"t-complex 11, testis-specific"	protein-coding
chr11.118672099.+	chr11	118672099	118672100	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10127	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr11.63864542.-	chr11	63864542	63864543	-	0	NA	"intron (NM_014067, intron 3 of 10)"	"intron (NM_014067, intron 3 of 10)"	6820	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	-	fibronectin leucine rich transmembrane protein 1	protein-coding
chr10.45240310.-	chr10	45240310	45240311	-	0	NA	Intergenic	AluSx1|SINE|Alu	166454	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr4.166248540.-	chr4	166248540	166248541	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	278	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr6.43016778.-	chr6	43016778	43016779	-	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	-4905	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr3.29051409.-	chr3	29051409	29051410	-	0	NA	Intergenic	AluSc8|SINE|Alu	271394	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr17.37768987.+	chr17	37768987	37768988	+	0	NA	Intergenic	Intergenic	-4812	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr4.44679375.-	chr4	44679375	44679376	-	0	NA	Intergenic	AluSg|SINE|Alu	1058	NM_021927	60558	Hs.546419	NM_021927	ENSG00000151806	GUF1	EF-4	GUF1 GTPase homolog (S. cerevisiae)	protein-coding
chr7.5583946.+	chr7	5583946	5583947	+	0	NA	Intergenic	AluY|SINE|Alu	-13714	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr20.43342008.+	chr20	43342008	43342009	+	0	NA	Intergenic	AluSx|SINE|Alu	-1877	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr7.1798897.+	chr7	1798897	1798898	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50099	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr3.88595858.-	chr3	88595858	88595859	-	0	NA	Intergenic	AluSc8|SINE|Alu	396842	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr3.44743407.-	chr3	44743407	44743408	-	0	NA	Intergenic	AluY|SINE|Alu	10728	NM_001134442	91392	Hs.224843	NM_001134440	ENSG00000196653	ZNF502	-	zinc finger protein 502	protein-coding
chr3.48533713.+	chr3	48533713	48533714	+	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	7770	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr4.38203585.+	chr4	38203585	38203586	+	0	NA	Intergenic	AluSg|SINE|Alu	82010	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr17.3857924.-	chr17	3857924	3857925	-	0	NA	"intron (NM_174955, intron 1 of 21)"	AluSg|SINE|Alu	-9834	NM_174957	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	"ATPase, Ca++ transporting, ubiquitous"	protein-coding
chr13.33774981.+	chr13	33774981	33774982	+	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	5206	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr19.50752348.+	chr19	50752348	50752349	+	0	NA	"exon (NM_001077186, exon 13 of 42)"	"exon (NM_001077186, exon 13 of 42)"	45463	NM_001145809	79784	Hs.467142	NM_001077186	ENSG00000105357	MYH14	DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	"myosin, heavy chain 14, non-muscle"	protein-coding
chr3.180546197.-	chr3	180546197	180546198	-	0	NA	Intergenic	CpG	84037	NM_005087	8087	Hs.478407	NM_001013438		FXR1	FXR1P	"fragile X mental retardation, autosomal homolog 1"	protein-coding
chr3.129047959.+	chr3	129047959	129047960	+	0	NA	Intergenic	AluY|SINE|Alu	-12839	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr19.50033434.-	chr19	50033434	50033435	-	0	NA	"intron (NM_020650, intron 2 of 6)"	AluSx|SINE|Alu	-2559	NM_020650	57333	Hs.567550	NM_020650	ENSG00000142552	RCN3	RLP49	"reticulocalbin 3, EF-hand calcium binding domain"	protein-coding
chr7.150812735.-	chr7	150812735	150812736	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28909	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr6.168219488.-	chr6	168219488	168219489	-	0	NA	Intergenic	AluSp|SINE|Alu	-7988	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr21.47485696.-	chr21	47485696	47485697	-	0	NA	Intergenic	Intergenic	32337	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr1.114299602.-	chr1	114299602	114299603	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2175	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr9.80376628.-	chr9	80376628	80376629	-	0	NA	"intron (NM_002072, intron 5 of 6)"	SVA_F|Other|Other	113396	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	"guanine nucleotide binding protein (G protein), alpha 14"	protein-coding
chr1.36611571.-	chr1	36611571	36611572	-	0	NA	"intron (NM_001270895, intron 1 of 4)"	AluY|SINE|Alu	-3544	NR_073098	27095	Hs.523131	NM_001270894	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
chr10.43563197.+	chr10	43563197	43563198	+	0	NA	Intergenic	Intergenic	-9320	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr12.38493561.+	chr12	38493561	38493562	+	0	NA	Intergenic	Intergenic	-216996	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr3.10376206.+	chr3	10376206	10376207	+	0	NA	"intron (NM_001001331, intron 22 of 22)"	"intron (NM_001001331, intron 22 of 22)"	-13348	NR_024272	6396	Hs.166924	NM_001136232	ENSG00000157020	SEC13	D3S1231E|SEC13L1|SEC13R|npp-20	SEC13 homolog (S. cerevisiae)	protein-coding
chr2.109308562.-	chr2	109308562	109308563	-	0	NA	Intergenic	AluY|SINE|Alu	27375	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr9.861796.-	chr9	861796	861797	-	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	-20106	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr19.3201522.-	chr19	3201522	3201523	-	0	NA	"exon (NM_020170, exon 6 of 15)"	"exon (NM_020170, exon 6 of 15)"	-15647	NM_020170	56926	Hs.657032	NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
chr22.50243127.-	chr22	50243127	50243128	-	0	NA	Intergenic	CpG	4370	NM_014838	9889	Hs.475208	NM_014838		ZBED4	-	"zinc finger, BED-type containing 4"	protein-coding
chr1.88061709.+	chr1	88061709	88061710	+	0	NA	Intergenic	AluY|SINE|Alu	-224371	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LOC100505768	-	uncharacterized LOC100505768	miscRNA
chr22.50655102.+	chr22	50655102	50655103	+	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	15694	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr6.127845940.-	chr6	127845940	127845941	-	0	NA	Intergenic	AluY|SINE|Alu	5440	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chrX.39680407.-	chrX	39680407	39680408	-	0	NA	Intergenic	CpG	-276312	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr12.39837523.+	chr12	39837523	39837524	+	0	NA	promoter-TSS (NM_001173463)	promoter-TSS (NM_001173463)	-331	NM_001173465	55605	Hs.374201	NM_001173463	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
chr17.3109974.-	chr17	3109974	3109975	-	0	NA	Intergenic	AluSc8|SINE|Alu	8941	NM_014565	8383	Hs.532688	NM_014565	ENSG00000172146	OR1A1	OR17-7	"olfactory receptor, family 1, subfamily A, member 1"	protein-coding
chr2.136760852.-	chr2	136760852	136760853	-	0	NA	Intergenic	AluSq2|SINE|Alu	17630	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr7.1474522.-	chr7	1474522	1474523	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24587	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr10.106539328.+	chr10	106539328	106539329	+	0	NA	"intron (NM_014978, intron 1 of 26)"	"intron (NM_014978, intron 1 of 26)"	138469	NM_014978	22986	Hs.671950	NM_014978	ENSG00000156395	SORCS3	SORCS	sortilin-related VPS10 domain containing receptor 3	protein-coding
chr9.139775641.+	chr9	139775641	139775642	+	0	NA	Intergenic	AluSp|SINE|Alu	-5324	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr7.795200.-	chr7	795200	795201	-	0	NA	"intron (NR_075098, intron 5 of 12)"	"intron (NR_075098, intron 5 of 12)"	27887	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr3.42630480.+	chr3	42630480	42630481	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1818	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr22.19435537.-	chr22	19435537	19435538	-	0	NA	"5' UTR (NM_001166242, exon 1 of 3)"	"5' UTR (NM_001166242, exon 1 of 3)"	-218	NM_173793	128977	Hs.659565	NM_001166242	ENSG00000242259	C22orf39	-	chromosome 22 open reading frame 39	protein-coding
chr17.37768989.-	chr17	37768989	37768990	-	0	NA	Intergenic	Intergenic	4814	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr10.32238985.+	chr10	32238985	32238986	+	0	NA	Intergenic	AluY|SINE|Alu	-21181	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr7.3230014.-	chr7	3230014	3230015	-	0	NA	Intergenic	AluSz|SINE|Alu	111066	NM_152744	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr19.8408090.-	chr19	8408090	8408091	-	0	NA	promoter-TSS (NM_198471)	promoter-TSS (NM_198471)	-56	NM_198471	256949	Hs.322473	NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
chr9.10974571.+	chr9	10974571	10974572	+	0	NA	Intergenic	L1PBa|LINE|L1	-361848	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr20.55985666.+	chr20	55985666	55985667	+	0	NA	"intron (NR_039970, intron 1 of 2)"	"intron (NR_039970, intron 1 of 2)"	19212	NM_183425	55544	Hs.236361	NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
chr5.25535450.+	chr5	25535450	25535451	+	0	NA	Intergenic	AluY|SINE|Alu	-694758	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr2.108084979.-	chr2	108084979	108084980	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-357604	NR_024439	729121	Hs.386155	XR_159390	ENSG00000230651	LOC729121	-	uncharacterized LOC729121	miscRNA
chr3.126260579.-	chr3	126260579	126260580	-	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	-17179	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr20.48080615.-	chr20	48080615	48080616	-	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	-18566	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr8.19626743.+	chr8	19626743	19626744	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48175	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr2.242447230.+	chr2	242447230	242447231	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	545	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr7.100714444.+	chr7	100714444	100714445	+	0	NA	Intergenic	AluSq2|SINE|Alu	-14342	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr6.169539687.-	chr6	169539687	169539688	-	0	NA	Intergenic	CpG	-114450	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr10.134216463.-	chr10	134216463	134216464	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5761	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chrX.47215668.+	chrX	47215668	47215669	+	0	NA	Intergenic	AluY|SINE|Alu	-14331	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr13.46489347.+	chr13	46489347	46489348	+	0	NA	Intergenic	MER52D|LTR|ERV1	-63501	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr11.86267756.-	chr11	86267756	86267757	-	0	NA	"intron (NM_001014811, intron 2 of 13)"	"intron (NM_001014811, intron 2 of 13)"	-115484	NM_001014811	10873	Hs.199743	NM_001014811	ENSG00000151376	ME3	NADP-ME	"malic enzyme 3, NADP(+)-dependent, mitochondrial"	protein-coding
chr2.238396163.+	chr2	238396163	238396164	+	0	NA	"intron (NM_001042467, intron 1 of 14)"	CpG	285	NM_024101	79083	Hs.102406	NM_001042467	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
chr15.20244653.+	chr15	20244653	20244654	+	0	NA	Intergenic	AluSp|SINE|Alu	-243344	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr1.2260065.-	chr1	2260065	2260066	-	0	NA	"intron (NM_024848, intron 12 of 13)"	"intron (NM_024848, intron 12 of 13)"	-24035	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr9.100459207.-	chr9	100459207	100459208	-	0	NA	"intron (NM_000380, intron 1 of 5)"	CpG	-484	NR_027302	7507	Hs.654364	NM_000380	ENSG00000136936	XPA	XP1|XPAC	"xeroderma pigmentosum, complementation group A"	protein-coding
chr16.77246806.-	chr16	77246806	77246807	-	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	-13457	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr6.13335714.-	chr6	13335714	13335715	-	0	NA	Intergenic	AluYa5|SINE|Alu	6927	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr4.13532593.-	chr4	13532593	13532594	-	0	NA	"intron (NR_034054, intron 1 of 3)"	"intron (NR_034054, intron 1 of 3)"	-448	NR_034054	285547	Hs.381892	NR_034054		LOC285547	-	uncharacterized LOC285547	miscRNA
chr1.117312779.-	chr1	117312779	117312780	-	0	NA	TTS (NM_001767)	TTS (NM_001767)	-15693	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr16.4051410.-	chr16	4051410	4051411	-	0	NA	"intron (NM_001116, intron 3 of 10)"	L1MD3|LINE|L1	-114776	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr2.58077692.+	chr2	58077692	58077693	+	0	NA	Intergenic	Intergenic	-196085	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr6.159320600.+	chr6	159320600	159320601	+	0	NA	"intron (NM_001195032, intron 2 of 2)"	AluY|SINE|Alu	10981	NM_001195032	100130967	Hs.32804	NM_001195032		C6orf99	yR211F11.1	chromosome 6 open reading frame 99	protein-coding
chr6.25384253.-	chr6	25384253	25384254	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104597	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr8.41540691.+	chr8	41540691	41540692	+	0	NA	"intron (NM_020476, intron 37 of 41)"	"intron (NM_020476, intron 37 of 41)"	-17887	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr3.132757869.+	chr3	132757869	132757870	+	0	NA	"intron (NM_023943, intron 1 of 5)"	CpG	698	NM_023943	66000	Hs.191616	NM_001136469	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
chr7.4357615.-	chr7	4357615	4357616	-	0	NA	Intergenic	AluSq2|SINE|Alu	-188298	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr1.25736533.+	chr1	25736533	25736534	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10830	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr19.1252672.-	chr19	1252672	1252673	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4120	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr12.18580297.+	chr12	18580297	18580298	+	0	NA	"intron (NM_004570, intron 17 of 31)"	AluSq2|SINE|Alu	165823	NM_004570	5288	Hs.22500	NM_004570	ENSG00000139144	PIK3C2G	PI3K-C2GAMMA	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma"	protein-coding
chr4.190662165.+	chr4	190662165	190662166	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199809	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr14.77227726.-	chr14	77227726	77227727	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	509	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr14.106023749.-	chr14	106023749	106023750	-	0	NA	Intergenic	AluSx1|SINE|Alu	-30796	NM_025268	80757	Hs.157527	NM_025268	ENSG00000184986	TMEM121	hole	transmembrane protein 121	protein-coding
chr8.141523825.-	chr8	141523825	141523826	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1744	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr10.69822265.-	chr10	69822265	69822266	-	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	-12838	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr6.85476309.+	chr6	85476309	85476310	+	0	NA	Intergenic	Intergenic	-2355	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr7.1001910.-	chr7	1001910	1001911	-	0	NA	Intergenic	Intergenic	7621	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr4.93787956.+	chr4	93787956	93787957	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562406	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr2.87793442.+	chr2	87793442	87793443	+	0	NA	"intron (NR_024204, intron 3 of 3)"	AluY|SINE|Alu	38468	NR_024206	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr16.30960996.-	chr16	30960996	30960997	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-591	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr22.20137584.+	chr22	20137584	20137585	+	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	-153	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr6.70692606.+	chr6	70692606	70692607	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116158	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr2.235844050.+	chr2	235844050	235844051	+	0	NA	Intergenic	AluSc|SINE|Alu	-16578	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr20.35167627.+	chr20	35167627	35167628	+	0	NA	Intergenic	AluY|SINE|Alu	-2260	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr8.6812637.-	chr8	6812637	6812638	-	0	NA	Intergenic	AluSp|SINE|Alu	3516	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr5.122861563.+	chr5	122861563	122861564	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13770	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr1.113336906.-	chr1	113336906	113336907	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73717	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr11.2929630.-	chr11	2929630	2929631	-	0	NA	"intron (NM_002555, intron 3 of 10)"	"intron (NM_002555, intron 3 of 10)"	4455	NM_007105	5003	Hs.300076	NM_007105		SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	"solute carrier family 22 (organic cation transporter), member 18 antisense"	protein-coding
chr2.68031687.-	chr2	68031687	68031688	-	0	NA	Intergenic	AluY|SINE|Alu	-258472	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr7.139162646.+	chr7	139162646	139162647	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5811	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr20.39978528.+	chr20	39978528	39978529	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8968	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr11.68855375.-	chr11	68855375	68855376	-	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	-39025	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr9.131638993.+	chr9	131638993	131638994	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluY|SINE|Alu	5361	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr4.166248583.+	chr4	166248583	166248584	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-235	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr6.33500234.+	chr6	33500234	33500235	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47836	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr5.178287404.-	chr5	178287404	178287405	-	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	-450	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr6.108280014.+	chr6	108280014	108280015	+	0	NA	promoter-TSS (NM_007214)	promoter-TSS (NM_007214)	-532	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr2.213402721.+	chr2	213402721	213402722	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	631	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr13.101317771.-	chr13	101317771	101317772	-	0	NA	"intron (NM_001079669, intron 2 of 17)"	MLT1N2|LTR|ERVL-MaLR	-9332	NM_001079669	84899	Hs.190983	NM_001079669	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
chr11.121543844.+	chr11	121543844	121543845	+	0	NA	Intergenic	Intergenic	220932	NM_003105	6653	Hs.368592	NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	"sortilin-related receptor, L(DLR class) A repeats containing"	protein-coding
chr20.61925833.-	chr20	61925833	61925834	-	0	NA	"intron (NM_020882, intron 1 of 35)"	"intron (NM_020882, intron 1 of 35)"	-1295	NM_020882	57642	Hs.271285	NM_020882	ENSG00000101203	COL20A1	bA261N11.4	"collagen, type XX, alpha 1"	protein-coding
chr2.58077708.-	chr2	58077708	58077709	-	0	NA	Intergenic	Intergenic	196069	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr8.6644928.+	chr8	6644928	6644929	+	0	NA	Intergenic	AluY|SINE|Alu	-42167	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr22.31732657.-	chr22	31732657	31732658	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9592	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr10.133878016.+	chr10	133878016	133878017	+	0	NA	Intergenic	MIR|SINE|MIR	-40297	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr8.14882360.-	chr8	14882360	14882361	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171341	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr6.46742413.-	chr6	46742413	46742414	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18681	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr21.33279846.+	chr21	33279846	33279847	+	0	NA	"intron (NM_014586, intron 1 of 10)"	"intron (NM_014586, intron 1 of 10)"	34218	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr2.20424068.-	chr2	20424068	20424069	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-859	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr5.176292936.-	chr5	176292936	176292937	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33397	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr17.3857917.-	chr17	3857917	3857918	-	0	NA	"intron (NM_174955, intron 1 of 21)"	AluSg|SINE|Alu	-9841	NM_174957	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	"ATPase, Ca++ transporting, ubiquitous"	protein-coding
chr22.18532513.-	chr22	18532513	18532514	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20362	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr7.3119914.+	chr7	3119914	3119915	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-36405	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr3.170641239.-	chr3	170641239	170641240	-	0	NA	Intergenic	SVA_C|Other|Other	14813	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr7.3119891.-	chr7	3119891	3119892	-	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	36382	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr2.10424829.-	chr2	10424829	10424830	-	0	NA	Intergenic	Intergenic	18201	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr10.126538803.-	chr10	126538803	126538804	-	0	NA	Intergenic	AluSc|SINE|Alu	-48449	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr7.139162641.-	chr7	139162641	139162642	-	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	-5816	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr3.129358115.-	chr3	129358115	129358116	-	0	NA	Intergenic	AluY|SINE|Alu	32533	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
chr5.54522823.-	chr5	54522823	54522824	-	0	NA	"intron (NM_001190787, intron 1 of 6)"	CpG-20700	-320	NM_001190787	345643	Hs.394578	NM_001190787	ENSG00000234602	MCIDAS	IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
chr22.21022165.-	chr22	21022165	21022166	-	0	NA	Intergenic	CpG	21678	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr22.18839317.+	chr22	18839317	18839318	+	0	NA	Intergenic	Intergenic	-54419	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr4.106689315.+	chr4	106689315	106689316	+	0	NA	"intron (NM_024751, intron 5 of 11)"	AluY|SINE|Alu	57345	NM_001031720	79807	Hs.161429	NM_001031720	ENSG00000138780	GSTCD	-	"glutathione S-transferase, C-terminal domain containing"	protein-coding
chr7.105033583.+	chr7	105033583	105033584	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4242	NM_182692	6733	Hs.285197	NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
chr17.71108225.-	chr17	71108225	71108226	-	0	NA	Intergenic	AluY|SINE|Alu	19372	NM_001159770	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr19.30963827.-	chr19	30963827	30963828	-	0	NA	"intron (NM_014717, intron 2 of 4)"	AluSx|SINE|Alu	-100499	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
chr9.66837911.+	chr9	66837911	66837912	+	0	NA	Intergenic	Intergenic	194161	NR_046175	286297	Hs.645503	NR_046175	ENSG00000182021	LOC286297	-	uncharacterized LOC286297	miscRNA
chrX.153657092.+	chrX	153657092	153657093	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	114	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr7.3124665.-	chr7	3124665	3124666	-	0	NA	Intergenic	AluSg7|SINE|Alu	41156	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr8.26241077.-	chr8	26241077	26241078	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-554	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr13.19517632.-	chr13	19517632	19517633	-	0	NA	Intergenic	GSATX|Satellite|centr	64767	NR_026852	348021	Hs.314114	NR_026852	ENSG00000232685	LINC00442	-	long intergenic non-protein coding RNA 442	miscRNA
chr20.48579890.+	chr20	48579890	48579891	+	0	NA	Intergenic	AluSx3|SINE|Alu	-19623	NM_005985	6615	Hs.48029	NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail homolog 1 (Drosophila)	protein-coding
chr1.110881058.+	chr1	110881058	110881059	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	735	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr2.170666390.-	chr2	170666390	170666391	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11068	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr19.57148721.-	chr19	57148721	57148722	-	0	NA	Intergenic	AluY|SINE|Alu	5806	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
chr16.1511394.+	chr16	1511394	1511395	+	0	NA	"intron (NM_001114331, intron 3 of 23)"	CpG	13691	NM_001287	1186	Hs.459649	NM_001114331	ENSG00000103249	CLCN7	CLC-7|CLC7|OPTA2|OPTB4|PPP1R63	"chloride channel, voltage-sensitive 7"	protein-coding
chr16.86337855.+	chr16	86337855	86337856	+	0	NA	Intergenic	CpG	17818	NR_038438	146513	Hs.434338	NR_038438	ENSG00000268532	LOC146513	-	uncharacterized LOC146513	miscRNA
chr3.13323871.-	chr3	13323871	13323872	-	0	NA	Intergenic	CpG	-137938	NM_024923	23225	Hs.475525	NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210kDa	protein-coding
chr7.66480059.-	chr7	66480059	66480060	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18267	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr1.2689587.-	chr1	2689587	2689588	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	-16643	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr21.10395305.-	chr21	10395305	10395306	-	0	NA	Intergenic	AluY|SINE|Alu	426712	NR_038328	100132288	Hs.626311	NM_001033515		TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
chr10.128174240.-	chr10	128174240	128174241	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35770	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr14.100647476.+	chr14	100647476	100647477	+	0	NA	Intergenic	SVA_D|Other|Other	-21464	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	"delta(4)-desaturase, sphingolipid 2"	protein-coding
chr1.27876458.-	chr1	27876458	27876459	-	0	NA	"exon (NM_001029882, exon 6 of 7)"	"exon (NM_001029882, exon 6 of 7)"	-53685	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	CL23945|DJ159A19.3|RP1-159A19.1	"AT hook, DNA binding motif, containing 1"	protein-coding
chr13.59346906.-	chr13	59346906	59346907	-	0	NA	Intergenic	AluY|SINE|Alu	-1141117	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr2.239047591.-	chr2	239047591	239047592	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-228	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr17.1165705.-	chr17	1165705	1165706	-	0	NA	Intergenic	AluSg|SINE|Alu	8153	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr2.43254194.-	chr2	43254194	43254195	-	0	NA	Intergenic	Intergenic	-199551	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr3.32620430.+	chr3	32620430	32620431	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8064	NM_016141	51143	Hs.529495	NM_016141	ENSG00000144635	DYNC1LI1	DNCLI1|LIC1	"dynein, cytoplasmic 1, light intermediate chain 1"	protein-coding
chr17.18560889.-	chr17	18560889	18560890	-	0	NA	TTS (NM_001145045)	TTS (NM_001145045)	13149	NM_001039397	254272	Hs.567880	NM_001039397	ENSG00000189375	TBC1D28	-	"TBC1 domain family, member 28"	protein-coding
chr19.16781116.+	chr19	16781116	16781117	+	0	NA	"intron (NM_024074, intron 1 of 5)"	AluSq|SINE|Alu	9178	NM_024074	79041	Hs.436068	NM_024074		TMEM38A	TRIC-A|TRICA	transmembrane protein 38A	protein-coding
chr15.50998364.-	chr15	50998364	50998365	-	0	NA	Intergenic	AluYa8|SINE|Alu	19352	NM_017672	54822	Hs.512894	NM_017672		TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK	"transient receptor potential cation channel, subfamily M, member 7"	protein-coding
chr3.42947778.-	chr3	42947778	42947779	-	0	NA	"5' UTR (NM_001134656, exon 1 of 4)"	"5' UTR (NM_001134656, exon 1 of 4)"	-120	NM_001134656	389114	Hs.720173	NM_001134656	ENSG00000182983	ZNF662	-	zinc finger protein 662	protein-coding
chr9.93000203.-	chr9	93000203	93000204	-	0	NA	Intergenic	AluY|SINE|Alu	196422	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr11.101363052.+	chr11	101363052	101363053	+	0	NA	"intron (NM_004621, intron 2 of 12)"	AluJb|SINE|Alu	27584	NR_037485	100500823		NR_037485		MIR3920	-	microRNA 3920	miscRNA
chr14.105242412.+	chr14	105242412	105242413	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17526	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr16.924630.-	chr16	924630	924631	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69187	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr15.57662563.+	chr15	57662563	57662564	+	0	NA	Intergenic	AluSx|SINE|Alu	-6140	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr20.60623984.+	chr20	60623984	60623985	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16882	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr2.38630363.+	chr2	38630363	38630364	+	0	NA	Intergenic	SVA_D|Other|Other	-25931	NR_024191	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr22.39040965.-	chr22	39040965	39040966	-	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	-11669	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr4.1358080.+	chr4	1358080	1358081	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16976	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr18.77627536.-	chr18	77627536	77627537	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3868	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr2.10733428.-	chr2	10733428	10733429	-	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	-96685	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr21.46131917.+	chr21	46131917	46131918	+	0	NA	promoter-TSS (NM_144991)	promoter-TSS (NM_144991)	-422	NM_001272037	54084	Hs.660703	NM_001272037	ENSG00000175894	TSPEAR	C21orf29|DFNB98|TSP-EAR	thrombospondin-type laminin G domain and EAR repeats	protein-coding
chr7.2774631.-	chr7	2774631	2774632	-	0	NA	"intron (NM_007353, intron 2 of 3)"	CpG	-55468	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr2.8977711.-	chr2	8977711	8977712	-	0	NA	promoter-TSS (NM_020738)	promoter-TSS (NM_020738)	-44	NM_020738	57498	Hs.9873	NM_020738	ENSG00000134313	KIDINS220	ARMS	"kinase D-interacting substrate, 220kDa"	protein-coding
chr6.141000300.-	chr6	141000300	141000301	-	0	NA	Intergenic	AluSx1|SINE|Alu	4651	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr10.4887319.+	chr10	4887319	4887320	+	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	18950	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr13.50297701.+	chr13	50297701	50297702	+	0	NA	"intron (NM_002267, intron 7 of 16)"	AluSg7|SINE|Alu	-32078	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr1.197754711.-	chr1	197754711	197754712	-	0	NA	Intergenic	AluY|SINE|Alu	10088	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr15.92290032.+	chr15	92290032	92290033	+	0	NA	Intergenic	AluY|SINE|Alu	-106906	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr19.36426483.+	chr19	36426483	36426484	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1539	NM_024509	79414	Hs.143792	NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
chr1.65532946.+	chr1	65532946	65532947	+	0	NA	Intergenic	CpG	-8755	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr16.89608216.+	chr16	89608216	89608217	+	0	NA	"intron (NM_003119, intron 9 of 16)"	"intron (NM_003119, intron 9 of 16)"	-18849	NM_001243131	6137	Hs.410817	NM_000977		RPL13	BBC1|D16S444E|D16S44E|L13	ribosomal protein L13	protein-coding
chr16.10673949.-	chr16	10673949	10673950	-	0	NA	"intron (NM_001424, intron 1 of 4)"	CpG	-590	NM_001424	2013	Hs.531561	NM_001424	ENSG00000213853	EMP2	XMP	epithelial membrane protein 2	protein-coding
chr17.79478578.-	chr17	79478578	79478579	-	0	NA	"exon (NM_001199954, exon 4 of 6)"	"exon (NM_001199954, exon 4 of 6)"	-1314	NR_037688	71	Hs.706229	NM_001199954	ENSG00000184009	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26	"actin, gamma 1"	protein-coding
chr5.96143614.-	chr5	96143614	96143615	-	0	NA	"5' UTR (NM_001040458, exon 1 of 19)"	"5' UTR (NM_001040458, exon 1 of 19)"	-278	NM_001040458	51752	Hs.666524	NM_001040458	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
chr21.43109561.+	chr21	43109561	43109562	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10099	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr20.47088239.-	chr20	47088239	47088240	-	0	NA	Intergenic	Intergenic	-99585	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr6.167600301.-	chr6	167600301	167600302	-	0	NA	Intergenic	Intergenic	-16220	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr19.47540423.+	chr19	47540423	47540424	+	0	NA	"intron (NM_002517, intron 5 of 10)"	AluSx1|SINE|Alu	11459	NM_017854	54958	Hs.105606	NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
chr7.155838947.+	chr7	155838947	155838948	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-233980	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr11.5315864.+	chr11	5315864	5315865	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7312	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr2.75236672.+	chr2	75236672	75236673	+	0	NA	Intergenic	AluSc8|SINE|Alu	50897	NM_019896	56655	Hs.469060	NM_019896		POLE4	YHHQ1|p12	"polymerase (DNA-directed), epsilon 4, accessory subunit"	protein-coding
chr2.240129780.-	chr2	240129780	240129781	-	0	NA	"intron (NM_006037, intron 3 of 26)"	AluY|SINE|Alu	12627	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	miscRNA
chr3.129048084.+	chr3	129048084	129048085	+	0	NA	Intergenic	AluY|SINE|Alu	-12964	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr20.39978473.+	chr20	39978473	39978474	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8913	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr15.91370824.-	chr15	91370824	91370825	-	0	NA	Intergenic	AluSz|SINE|Alu	41061	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr19.14551301.-	chr19	14551301	14551302	-	0	NA	"intron (NM_213560, intron 1 of 21)"	"intron (NM_213560, intron 1 of 21)"	-215	NM_213560	5585	Hs.466044	NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
chr22.20255609.+	chr22	20255609	20255610	+	0	NA	"exon (NM_023004, exon 1 of 2)"	"exon (NM_023004, exon 1 of 2)"	207	NM_023004	65078	Hs.30868	NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
chr3.9398168.+	chr3	9398168	9398169	+	0	NA	Intergenic	AluY|SINE|Alu	-6549	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr17.38239482.+	chr17	38239482	38239483	+	0	NA	"intron (NM_199334, intron 4 of 8)"	AluSx|SINE|Alu	17496	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr6.126111986.-	chr6	126111986	126111987	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-77	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr15.90328014.+	chr15	90328014	90328015	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8425	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr18.8610142.-	chr18	8610142	8610143	-	0	NA	"intron (NM_001025300, intron 1 of 5)"	CpG	-699	NM_001025300	201475	Hs.270074	NM_001025300	ENSG00000206418	RAB12	-	"RAB12, member RAS oncogene family"	protein-coding
chr2.9265741.+	chr2	9265741	9265742	+	0	NA	Intergenic	AluSz6|SINE|Alu	-81153	NM_001135191	8853	Hs.555902	NM_001135191	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	"ArfGAP with SH3 domain, ankyrin repeat and PH domain 2"	protein-coding
chr2.242500470.-	chr2	242500470	242500471	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1912	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr1.30574810.-	chr1	30574810	30574811	-	0	NA	Intergenic	Intergenic	616809	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	miscRNA
chr8.52446928.+	chr8	52446928	52446929	+	0	NA	"intron (NM_144651, intron 4 of 22)"	SVA_F|Other|Other	275077	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr1.230202950.+	chr1	230202950	230202951	+	0	NA	promoter-TSS (NM_004481)	promoter-TSS (NM_004481)	-6	NM_004481	2590	Hs.743964	NM_004481	ENSG00000143641	GALNT2	GalNAc-T2	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)	protein-coding
chr11.76569999.-	chr11	76569999	76570000	-	0	NA	Intergenic	AluSx1|SINE|Alu	1918	NM_018367	55331	Hs.23862	NM_018367		ACER3	APHC|PHCA	alkaline ceramidase 3	protein-coding
chr1.1077268.-	chr1	1077268	1077269	-	0	NA	"intron (NR_038869, intron 2 of 2)"	"intron (NR_038869, intron 2 of 2)"	-4871	NR_038869	254099	Hs.680488	NR_038869	ENSG00000223823	LOC254099	-	uncharacterized LOC254099	miscRNA
chr1.6265804.-	chr1	6265804	6265805	-	0	NA	promoter-TSS (NM_207396)	promoter-TSS (NM_207396)	385	NM_207396	388591	Hs.716549	NM_173795	ENSG00000158286	RNF207	C1orf188	ring finger protein 207	protein-coding
chr20.61978884.+	chr20	61978884	61978885	+	0	NA	"intron (NR_046317, intron 5 of 5)"	"intron (NR_046317, intron 5 of 5)"	13864	NM_000744	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr16.65732365.-	chr16	65732365	65732366	-	0	NA	Intergenic	AluY|SINE|Alu	122162	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LOC283867	-	uncharacterized LOC283867	miscRNA
chr9.107727037.-	chr9	107727037	107727038	-	0	NA	Intergenic	AluYa5|SINE|Alu	36510	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr12.51681516.+	chr12	51681516	51681517	+	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	-17314	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr19.7929630.-	chr19	7929630	7929631	-	0	NA	"3' UTR (NM_001159944, exon 19 of 19)"	"3' UTR (NM_001159944, exon 19 of 19)"	-9696	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr16.6394211.-	chr16	6394211	6394212	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluSq10|SINE|Alu	-325079	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chrX.133643954.+	chrX	133643954	133643955	+	0	NA	Intergenic	L1PA10|LINE|L1	30338	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr19.267129.+	chr19	267129	267130	+	0	NA	Intergenic	CpG	24040	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr9.113201832.-	chr9	113201832	113201833	-	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	101707	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chrX.86721002.-	chrX	86721002	86721003	-	0	NA	Intergenic	SVA_C|Other|Other	51713	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr5.178657998.+	chr5	178657998	178657999	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114433	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr9.93000169.-	chr9	93000169	93000170	-	0	NA	Intergenic	AluY|SINE|Alu	196388	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr20.59796191.+	chr20	59796191	59796192	+	0	NA	Intergenic	Intergenic	-31291	NM_001794	1002	Hs.473231	NM_001252338		CDH4	CAD4|RCAD	"cadherin 4, type 1, R-cadherin (retinal)"	protein-coding
chr2.170687917.+	chr2	170687917	170687918	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3899	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr8.21944410.-	chr8	21944410	21944411	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2304	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chr11.17160923.+	chr11	17160923	17160924	+	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	30431	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr9.138065686.-	chr9	138065686	138065687	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7769	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr9.719245.-	chr9	719245	719246	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12439	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr7.91257060.+	chr7	91257060	91257061	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252956	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr16.86600792.-	chr16	86600792	86600793	-	0	NA	promoter-TSS (NM_005251)	promoter-TSS (NM_005251)	65	NM_005251	2303	Hs.740701	NM_005251	ENSG00000176692	FOXC2	FKHL14|LD|MFH-1|MFH1	"forkhead box C2 (MFH-1, mesenchyme forkhead 1)"	protein-coding
chr20.20772502.+	chr20	20772502	20772503	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79236	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr1.151742031.-	chr1	151742031	151742032	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2900	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr9.131293133.+	chr9	131293133	131293134	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21704	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr6.33500266.-	chr6	33500266	33500267	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47804	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr17.21027139.+	chr17	21027139	21027140	+	0	NA	Intergenic	AluSc|SINE|Alu	-3102	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr14.77600322.+	chr14	77600322	77600323	+	0	NA	"intron (NM_174976, intron 2 of 2)"	"intron (NM_174976, intron 2 of 2)"	7812	NM_174976	283576	Hs.525485	NM_174976	ENSG00000177108	ZDHHC22	C14orf59	"zinc finger, DHHC-type containing 22"	protein-coding
chr1.161879486.-	chr1	161879486	161879487	-	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	-114158	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr17.74732638.+	chr17	74732638	74732639	+	0	NA	promoter-TSS (NM_001242532)	promoter-TSS (NM_001242532)	-8	NR_030366	693221		NR_030366		MIR636	MIRN636|hsa-mir-636	microRNA 636	miscRNA
chr8.42888214.-	chr8	42888214	42888215	-	0	NA	Intergenic	SVA_D|Other|Other	23228	NR_033698	2339	Hs.370312	NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	"farnesyltransferase, CAAX box, alpha"	protein-coding
chr1.2587539.-	chr1	2587539	2587540	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	23058	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr14.80915493.-	chr14	80915493	80915494	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218096	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr11.41260596.+	chr11	41260596	41260597	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220590	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr9.108210395.-	chr9	108210395	108210396	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-70	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr9.861774.+	chr9	861774	861775	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20084	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr2.242500496.-	chr2	242500496	242500497	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1938	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr22.31792830.-	chr22	31792830	31792831	-	0	NA	Intergenic	AluJr4|SINE|Alu	2709	NM_004147	4733	Hs.115242	NM_004147	ENSG00000185721	DRG1	NEDD3	developmentally regulated GTP binding protein 1	protein-coding
chr16.28074322.+	chr16	28074322	28074323	+	0	NA	"intron (NM_001109763, intron 1 of 6)"	CpG	508	NM_001109763	146395	Hs.91910	NM_001109763	ENSG00000169181	GSG1L	PRO19651	GSG1-like	protein-coding
chr19.44489471.-	chr19	44489471	44489472	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1149	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr18.34994659.-	chr18	34994659	34994660	-	0	NA	"intron (NM_001025089, intron 2 of 11)"	AluY|SINE|Alu	-151341	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr2.71559429.+	chr2	71559429	71559430	+	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	544	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr16.84754611.+	chr16	84754611	84754612	+	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	21056	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr2.131551990.+	chr2	131551990	131551991	+	0	NA	Intergenic	AluY|SINE|Alu	38126	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr3.28951260.+	chr3	28951260	28951261	+	0	NA	Intergenic	AluY|SINE|Alu	334491	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chrX.133328823.+	chrX	133328823	133328824	+	0	NA	Intergenic	AluSg|SINE|Alu	-24515	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr17.79340204.+	chr17	79340204	79340205	+	0	NA	Intergenic	Intergenic	18956	NM_001272086	100130370	Hs.651390	XM_001714096		LOC100130370	-	uncharacterized LOC100130370	protein-coding
chr7.104213591.-	chr7	104213591	104213592	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSx1|SINE|Alu	-230948	NR_034141	645591	Hs.658835	NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	miscRNA
chr7.4681973.+	chr7	4681973	4681974	+	0	NA	Intergenic	CpG	-39957	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr14.103988602.-	chr14	103988602	103988603	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-594	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr6.88118033.-	chr6	88118033	88118034	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-343	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr1.28895936.+	chr1	28895936	28895937	+	0	NA	"intron (NM_017846, intron 6 of 8)"	AluY|SINE|Alu	9398	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	"small nucleolar RNA, C/D box 99"	snoRNA
chrX.86721001.+	chrX	86721001	86721002	+	0	NA	Intergenic	SVA_C|Other|Other	-51714	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr12.96096891.+	chr12	96096891	96096892	+	0	NA	"intron (NM_021229, intron 5 of 9)"	AluSx1|SINE|Alu	53860	NR_077225	100132594	Hs.676211	NR_077225		PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
chrX.29584339.+	chrX	29584339	29584340	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-649336	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr1.242178367.+	chr1	242178367	242178368	+	0	NA	Intergenic	AluY|SINE|Alu	-15982	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr7.2297167.+	chr7	2297167	2297168	+	0	NA	"intron (NM_013321, intron 8 of 10)"	CpG-23885	14627	NM_198953	4521	Hs.534331	NM_002452	ENSG00000106268	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
chr1.150309643.-	chr1	150309643	150309644	-	0	NA	"intron (NM_004698, intron 7 of 15)"	AluY|SINE|Alu	-15715	NM_004698	9129	Hs.11776	NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18	PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)	protein-coding
chr7.99630204.-	chr7	99630204	99630205	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	-16985	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr3.95669681.-	chr3	95669681	95669682	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	267644	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr19.14156326.-	chr19	14156326	14156327	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13645	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr20.62108114.-	chr20	62108114	62108115	-	0	NA	Intergenic	AluSq2|SINE|Alu	4121	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr12.53369460.-	chr12	53369460	53369461	-	0	NA	Intergenic	Intergenic	25810	NM_001256293	3856	Hs.708445	NM_001256282	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
chr6.36628638.-	chr6	36628638	36628639	-	0	NA	Intergenic	CpG	15599	NM_001220777	1026	Hs.732576	NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	"cyclin-dependent kinase inhibitor 1A (p21, Cip1)"	protein-coding
chr7.5570054.+	chr7	5570054	5570055	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	178	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr1.178011411.+	chr1	178011411	178011412	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4269	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr7.36403856.-	chr7	36403856	36403857	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2926	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr10.94709442.-	chr10	94709442	94709443	-	0	NA	"intron (NM_001013848, intron 14 of 21)"	AluSq2|SINE|Alu	-101217	NM_019053	54536	Hs.655657	NM_001013848	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
chr7.157129513.+	chr7	157129513	157129514	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-197	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr14.103988567.-	chr14	103988567	103988568	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-629	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr15.97879791.-	chr15	97879791	97879792	-	0	NA	Intergenic	AluSp|SINE|Alu	-537868	NR_024172	91948	Hs.130423	NR_024172	ENSG00000251209	LOC91948	-	uncharacterized LOC91948	miscRNA
chr17.1634057.+	chr17	1634057	1634058	+	0	NA	"exon (NM_001163673, exon 3 of 10)"	"exon (NM_001163673, exon 3 of 10)"	5932	NM_001163809	124997	Hs.234572	NM_001163673	ENSG00000167716	WDR81	CAMRQ2	WD repeat domain 81	protein-coding
chr12.8057416.-	chr12	8057416	8057417	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31476	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr5.52316781.+	chr5	52316781	52316782	+	0	NA	"intron (NR_073107, intron 1 of 28)"	AluSx|SINE|Alu	31625	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	"integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)"	protein-coding
chr19.45678475.+	chr19	45678475	45678476	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3026	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr14.52633483.-	chr14	52633483	52633484	-	0	NA	Intergenic	LTR12C|LTR|ERV1	97537	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
chr7.1580050.-	chr7	1580050	1580051	-	0	NA	"3' UTR (NM_002360, exon 3 of 3)"	"3' UTR (NM_002360, exon 3 of 3)"	-9682	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chrX.99891420.-	chrX	99891420	99891421	-	0	NA	"intron (NM_003270, intron 1 of 7)"	CpG	-374	NM_003270	7105	Hs.43233	NM_003270	ENSG00000000003	TSPAN6	T245|TM4SF6|TSPAN-6	tetraspanin 6	protein-coding
chr2.232260571.-	chr2	232260571	232260572	-	0	NA	"intron (NM_145236, intron 1 of 1)"	CpG	-236	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr2.240402028.-	chr2	240402028	240402029	-	0	NA	Intergenic	Intergenic	79385	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr5.1824190.-	chr5	1824190	1824191	-	0	NA	Intergenic	AluSz6|SINE|Alu	-22694	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr6.158700259.+	chr6	158700259	158700260	+	0	NA	Intergenic	AluY|SINE|Alu	-33433	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr7.155246449.+	chr7	155246449	155246450	+	0	NA	Intergenic	CpG	-4375	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr17.40543988.+	chr17	40543988	40543989	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3475	NM_139276	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr12.111714713.-	chr12	111714713	111714714	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92212	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr5.170687203.-	chr5	170687203	170687204	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49085	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr5.25101023.+	chr5	25101023	25101024	+	0	NA	Intergenic	AluSc|SINE|Alu	-260331	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr5.89746538.+	chr5	89746538	89746539	+	0	NA	Intergenic	AluSz|SINE|Alu	24047	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr2.170684197.+	chr2	170684197	170684198	+	0	NA	"exon (NM_172070, exon 1 of 39)"	"exon (NM_172070, exon 1 of 39)"	179	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chrY.59004220.-	chrY	59004220	59004221	-	0	NA	Intergenic	AluSq2|SINE|Alu	96237	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
chr7.1986837.+	chr7	1986837	1986838	+	0	NA	"intron (NM_001013836, intron 16 of 18)"	"intron (NM_001013836, intron 16 of 18)"	-102948	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr17.12456674.-	chr17	12456674	12456675	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3389	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr9.134615611.-	chr9	134615611	134615612	-	0	NA	Intergenic	Intergenic	2686	NM_005312	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
chr1.61398438.+	chr1	61398438	61398439	+	0	NA	Intergenic	AluY|SINE|Alu	-144508	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr2.114361293.-	chr2	114361293	114361294	-	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	-1	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr22.50628769.+	chr22	50628769	50628770	+	0	NA	"intron (NM_025204, intron 1 of 9)"	"intron (NM_025204, intron 1 of 9)"	4409	NM_025204	80305	Hs.741417	NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
chr12.127898774.-	chr12	127898774	127898775	-	0	NA	Intergenic	Intergenic	467388	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr14.23517161.-	chr14	23517161	23517162	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5785	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr17.744644.+	chr17	744644	744645	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22707	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr5.86907860.-	chr5	86907860	86907861	-	0	NA	Intergenic	AluY|SINE|Alu	199010	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr3.1144518.-	chr3	1144518	1144519	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9889	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr20.13654606.-	chr20	13654606	13654607	-	0	NA	Intergenic	AluY|SINE|Alu	35023	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr17.1165709.-	chr17	1165709	1165710	-	0	NA	Intergenic	AluSg|SINE|Alu	8149	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr1.38342285.-	chr1	38342285	38342286	-	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	16993	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr1.6132103.+	chr1	6132103	6132104	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25929	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr19.13497339.-	chr19	13497339	13497340	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119935	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chrX.112142827.+	chrX	112142827	112142828	+	0	NA	Intergenic	AluY|SINE|Alu	-58784	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr14.55349943.-	chr14	55349943	55349944	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5032	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chrM.621.-	chrM	621	622	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.130734366.-	chr9	130734366	130734367	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8446	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr20.56237694.+	chr20	56237694	56237695	+	0	NA	"intron (NM_199171, intron 1 of 3)"	"intron (NM_199171, intron 1 of 3)"	27986	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	"prostate transmembrane protein, androgen induced 1"	protein-coding
chr9.139513552.-	chr9	139513552	139513553	-	0	NA	Intergenic	Intergenic	39756	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr19.47803189.-	chr19	47803189	47803190	-	0	NA	Intergenic	AluSg|SINE|Alu	9915	NM_001736	728	Hs.2161	NM_001736	ENSG00000197405	C5AR1	C5A|C5AR|C5R1|CD88	complement component 5a receptor 1	protein-coding
chr3.128194256.-	chr3	128194256	128194257	-	0	NA	Intergenic	Intergenic	8165	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr8.28242708.-	chr8	28242708	28242709	-	0	NA	"intron (NM_018660, intron 1 of 9)"	"intron (NM_018660, intron 1 of 9)"	-1269	NM_018660	55893	Hs.695998	NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
chr12.46662467.+	chr12	46662467	46662468	+	0	NA	"5' UTR (NM_030674, exon 1 of 17)"	"5' UTR (NM_030674, exon 1 of 17)"	741	NM_001077484	81539	Hs.533770	NM_001077484		SLC38A1	ATA1|NAT2|SAT1|SNAT1	"solute carrier family 38, member 1"	protein-coding
chr16.77410094.-	chr16	77410094	77410095	-	0	NA	"intron (NM_199355, intron 3 of 22)"	AluSp|SINE|Alu	-58917	NM_199355	170692	Hs.188746	NM_199355	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2	"ADAM metallopeptidase with thrombospondin type 1 motif, 18"	protein-coding
chr9.10974547.-	chr9	10974547	10974548	-	0	NA	Intergenic	L1PBa|LINE|L1	361824	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.58008308.+	chr2	58008308	58008309	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265469	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr10.6985587.-	chr10	6985587	6985588	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164027	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr7.95234921.+	chr7	95234921	95234922	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8996	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr8.146024436.+	chr8	146024436	146024437	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	175	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chrX.70493584.-	chrX	70493584	70493585	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9458	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr19.4141918.+	chr19	4141918	4141919	+	0	NA	Intergenic	AluY|SINE|Alu	-11680	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr12.133197359.-	chr12	133197359	133197360	-	0	NA	"intron (NM_174872, intron 5 of 8)"	"intron (NM_174872, intron 5 of 8)"	-1956	NM_012226	22953	Hs.258580	NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	"purinergic receptor P2X, ligand-gated ion channel, 2"	protein-coding
chr6.8388470.-	chr6	8388470	8388471	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47324	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr16.88772903.-	chr16	88772903	88772904	-	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	-12	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr2.158052745.-	chr2	158052745	158052746	-	0	NA	Intergenic	AluYk4|SINE|Alu	61595	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr17.57884702.-	chr17	57884702	57884703	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33925	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr2.198058529.-	chr2	198058529	198058530	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-116992	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr6.114387678.+	chr6	114387678	114387679	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3637	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chr6.170256925.-	chr6	170256925	170256926	-	0	NA	Intergenic	SVA_A|Other|Other	58004	NR_026781	401288	Hs.556095	NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	miscRNA
chr9.138663342.+	chr9	138663342	138663343	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69311	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr7.36845291.-	chr7	36845291	36845292	-	0	NA	Intergenic	AluJb|SINE|Alu	81137	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr1.61398342.-	chr1	61398342	61398343	-	0	NA	Intergenic	AluY|SINE|Alu	144604	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr20.55247389.-	chr20	55247389	55247390	-	0	NA	Intergenic	AluSz6|SINE|Alu	-43031	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr2.74351422.+	chr2	74351422	74351423	+	0	NA	Intergenic	SVA_B|Other|Other	23617	NM_212552	388962	Hs.61472	NM_001035505	ENSG00000163170	BOLA3	MMDS2	bolA homolog 3 (E. coli)	protein-coding
chr11.71878783.+	chr11	71878783	71878784	+	0	NA	Intergenic	AluSx|SINE|Alu	-21819	NM_016725	2348	Hs.73769	NM_000802	ENSG00000110195	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
chr7.627672.+	chr7	627672	627673	+	0	NA	"intron (NM_002735, intron 7 of 10)"	"intron (NM_002735, intron 7 of 10)"	67644	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr2.42801291.-	chr2	42801291	42801292	-	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	-5620	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr4.38809150.+	chr4	38809150	38809151	+	0	NA	Intergenic	SVA_D|Other|Other	-2738	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr11.100596531.-	chr11	100596531	100596532	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38124	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr5.3188288.+	chr5	3188288	3188289	+	0	NA	Intergenic	CpG	347920	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr16.89868597.+	chr16	89868597	89868598	+	0	NA	"intron (NM_001018112, intron 8 of 10)"	AluSx|SINE|Alu	14468	NM_001018112	2175	Hs.744083	NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	"Fanconi anemia, complementation group A"	protein-coding
chr21.45684282.+	chr21	45684282	45684283	+	0	NA	Intergenic	AluY|SINE|Alu	-2183	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr7.100044655.-	chr7	100044655	100044656	-	0	NA	Intergenic	AluY|SINE|Alu	10561	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr20.50461040.+	chr20	50461040	50461041	+	0	NA	Intergenic	AluSq10|SINE|Alu	-41992	NM_020436	57167	Hs.517113	NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|ZNF797|dJ1112F19.1	sal-like 4 (Drosophila)	protein-coding
chr1.7739291.+	chr1	7739291	7739292	+	0	NA	"intron (NM_015215, intron 11 of 22)"	"intron (NM_015215, intron 11 of 22)"	-92038	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr1.45948983.-	chr1	45948983	45948984	-	0	NA	"intron (NM_007170, intron 1 of 10)"	"intron (NM_007170, intron 1 of 10)"	-7857	NM_007170	10420	Hs.591499	NM_007170	ENSG00000070759	TESK2	-	testis-specific kinase 2	protein-coding
chr19.49060895.+	chr19	49060895	49060896	+	0	NA	"intron (NM_177973, intron 1 of 6)"	AluSp|SINE|Alu	5466	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr4.40196281.+	chr4	40196281	40196282	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2246	NM_004310	399	Hs.654594	NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
chr16.33293939.-	chr16	33293939	33293940	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4763	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr9.21968317.+	chr9	21968317	21968318	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1179	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr15.93316329.-	chr15	93316329	93316330	-	0	NA	Intergenic	AluSp|SINE|Alu	22385	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr1.2629113.-	chr1	2629113	2629114	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	64632	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr14.67865481.-	chr14	67865481	67865482	-	0	NA	"intron (NM_016445, intron 1 of 8)"	AluJr|SINE|Alu	-13347	NM_016445	26499	Hs.170473	NM_016445	ENSG00000100558	PLEK2	-	pleckstrin 2	protein-coding
chr4.1616049.+	chr4	1616049	1616050	+	0	NA	Intergenic	Intergenic	69669	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr7.519526.-	chr7	519526	519527	-	0	NA	Intergenic	Intergenic	-39955	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr22.49428558.-	chr22	49428558	49428559	-	0	NA	Intergenic	Intergenic	-165976	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr2.115328264.-	chr2	115328264	115328265	-	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	-109084	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr13.25859692.-	chr13	25859692	25859693	-	0	NA	"intron (NM_004685, intron 1 of 13)"	AluSx1|SINE|Alu	-2012	NM_004685	9107	Hs.643702	NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
chr5.112263720.+	chr5	112263720	112263721	+	0	NA	Intergenic	AluY|SINE|Alu	-5689	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr20.34266098.+	chr20	34266098	34266099	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluY|SINE|Alu	-13220	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr3.185305610.+	chr3	185305610	185305611	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1579	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr14.51926468.-	chr14	51926468	51926469	-	0	NA	"intron (NR_051990, intron 2 of 2)"	AluY|SINE|Alu	29371	NM_001042481	122786	Hs.434914	NM_001042481	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
chr1.19676464.-	chr1	19676464	19676465	-	0	NA	"intron (NM_001206540, intron 6 of 9)"	"intron (NM_001206540, intron 6 of 9)"	-37724	NM_001040125	54896	Hs.647620	NM_001040125	ENSG00000040487	PQLC2	-	PQ loop repeat containing 2	protein-coding
chr3.14349512.-	chr3	14349512	14349513	-	0	NA	Intergenic	Intergenic	94594	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr11.76858974.-	chr11	76858974	76858975	-	0	NA	"exon (NM_001127179, exon 4 of 27)"	"exon (NM_001127179, exon 4 of 27)"	-19658	NM_001127180	4647	Hs.370421	NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
chr10.89762189.+	chr10	89762189	89762190	+	0	NA	Intergenic	AluSq2|SINE|Alu	138994	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
chr14.24780721.-	chr14	24780721	24780722	-	0	NA	promoter-TSS (NM_001143919)	promoter-TSS (NM_001143919)	-16	NM_001143919	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr9.90885002.+	chr9	90885002	90885003	+	0	NA	Intergenic	AluY|SINE|Alu	-118295	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr3.179171109.+	chr3	179171109	179171110	+	0	NA	Intergenic	AluSx|SINE|Alu	-1738	NM_021629	59345	Hs.173030	NM_021629		GNB4	-	"guanine nucleotide binding protein (G protein), beta polypeptide 4"	protein-coding
chr1.121484685.-	chr1	121484685	121484686	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-223775	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr8.27695132.+	chr8	27695132	27695133	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	217	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr17.42869175.+	chr17	42869175	42869176	+	0	NA	Intergenic	AluY|SINE|Alu	32607	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr19.50803064.-	chr19	50803064	50803065	-	0	NA	"intron (NM_001145809, intron 39 of 42)"	AluSz|SINE|Alu	-29570	NM_004977	3748	Hs.467146	NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	"potassium voltage-gated channel, Shaw-related subfamily, member 3"	protein-coding
chr6.85476319.+	chr6	85476319	85476320	+	0	NA	Intergenic	Intergenic	-2365	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr1.151473992.+	chr1	151473992	151473993	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-9870	NM_020770	57530	Hs.591464	NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
chr2.47660758.+	chr2	47660758	47660759	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30552	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr20.16554106.-	chr20	16554106	16554107	-	0	NA	promoter-TSS (NM_001199865)	promoter-TSS (NM_001199865)	27	NM_001199866	55614	Hs.101774	NM_001199865	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
chr16.2159428.+	chr16	2159428	2159429	+	0	NA	"exon (NM_000296, exon 15 of 46)"	"exon (NM_000296, exon 15 of 46)"	-19143	NR_030646	100188847		NR_030646		MIR1225	MIRN1225	microRNA 1225	miscRNA
chr6.151771582.-	chr6	151771582	151771583	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1734	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr6.88118007.-	chr6	88118007	88118008	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-317	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr18.73357761.-	chr18	73357761	73357762	-	0	NA	Intergenic	L2|LINE|L2	218172	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr14.95067804.-	chr14	95067804	95067805	-	0	NA	Intergenic	AluY|SINE|Alu	10910	NM_001085	12	Hs.710488	NM_001085	ENSG00000196136	SERPINA3	AACT|ACT|GIG25	"serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3"	protein-coding
chr22.20989100.-	chr22	20989100	20989101	-	0	NA	Intergenic	MIRc|SINE|MIR	54743	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chrX.103014822.-	chrX	103014822	103014823	-	0	NA	Intergenic	AluY|SINE|Alu	16617	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr8.130306063.+	chr8	130306063	130306064	+	0	NA	Intergenic	AluY|SINE|Alu	-52577	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LOC728724	-	hCG1814486	miscRNA
chr16.12163789.+	chr16	12163789	12163790	+	0	NA	"intron (NM_032167, intron 10 of 20)"	AluYc|SINE|Alu	93187	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr3.129867987.-	chr3	129867987	129867988	-	0	NA	Intergenic	HERVE-int|LTR|ERV1	37711	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr9.130325623.+	chr9	130325623	130325624	+	0	NA	"intron (NM_001035534, intron 1 of 13)"	"intron (NM_001035534, intron 1 of 13)"	5732	NM_022833	64855	Hs.522401	NM_001035534	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	"family with sequence similarity 129, member B"	protein-coding
chr2.60688060.-	chr2	60688060	60688061	-	0	NA	"exon (NM_022893, exon 4 of 4)"	"exon (NM_022893, exon 4 of 4)"	73480	NR_039631	100616473		NR_039631	ENSG00000266078	MIR4432	-	microRNA 4432	miscRNA
chr19.1274582.-	chr19	1274582	1274583	-	0	NA	promoter-TSS (NM_017914)	promoter-TSS (NM_017914)	938	NM_017914	55009	Hs.591383	NM_017914		C19orf24	-	chromosome 19 open reading frame 24	protein-coding
chr16.9185109.-	chr16	9185109	9185110	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	428	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr9.135947028.+	chr9	135947028	135947029	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9663	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr9.108210426.-	chr9	108210426	108210427	-	0	NA	"5' UTR (NM_001145313, exon 1 of 14)"	"5' UTR (NM_001145313, exon 1 of 14)"	-101	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr21.47403586.-	chr21	47403586	47403587	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1923	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr2.37193743.-	chr2	37193743	37193744	-	0	NA	promoter-TSS (NM_003162)	promoter-TSS (NM_003162)	128	NM_003162	6801	Hs.127486	NM_003162		STRN	SG2NA	"striatin, calmodulin binding protein"	protein-coding
chr22.24988240.+	chr22	24988240	24988241	+	0	NA	"intron (NM_207644, intron 1 of 3)"	"intron (NM_207644, intron 1 of 3)"	795	NM_207644	388886	Hs.113314	NM_207644	ENSG00000178026	FAM211B	C22orf36	"family with sequence similarity 211, member B"	protein-coding
chr22.24237227.+	chr22	24237227	24237228	+	0	NA	"exon (NM_002415, exon 3 of 3)"	"exon (NM_002415, exon 3 of 3)"	662	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr12.43781889.+	chr12	43781889	43781890	+	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	163835	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr1.32828105.+	chr1	32828105	32828106	+	0	NA	promoter-TSS (NM_001167676)	promoter-TSS (NM_001167676)	243	NM_052841	81629	Hs.512763	NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis-specific serine kinase 3	protein-coding
chr4.7265045.+	chr4	7265045	7265046	+	0	NA	"intron (NM_020777, intron 1 of 26)"	"intron (NM_020777, intron 1 of 26)"	-47132	NR_039961	100616471		NR_039961		MIR4798	-	microRNA 4798	miscRNA
chr2.8966028.+	chr2	8966028	8966029	+	0	NA	"intron (NM_020738, intron 2 of 29)"	AluY|SINE|Alu	11727	NM_020738	57498	Hs.9873	NM_020738	ENSG00000134313	KIDINS220	ARMS	"kinase D-interacting substrate, 220kDa"	protein-coding
chr20.52741094.+	chr20	52741094	52741095	+	0	NA	Intergenic	AluSx1|SINE|Alu	49422	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr22.46326786.-	chr22	46326786	46326787	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46222	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr9.14830642.-	chr9	14830642	14830643	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51111	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr7.1474610.+	chr7	1474610	1474611	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24499	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chrX.102848968.-	chrX	102848968	102848969	-	0	NA	Intergenic	AluY|SINE|Alu	-8549	NM_001006937	79921	Hs.194329	NM_001006935	ENSG00000133142	TCEAL4	NPD017	transcription elongation factor A (SII)-like 4	protein-coding
chr3.46792313.+	chr3	46792313	46792314	+	0	NA	Intergenic	CpG	-6068	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr14.102101582.+	chr14	102101582	102101583	+	0	NA	Intergenic	CpG	73894	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr11.342897.-	chr11	342897	342898	-	0	NA	Intergenic	AluSz|SINE|Alu	21983	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr11.1122348.-	chr11	1122348	1122349	-	0	NA	Intergenic	Intergenic	-47473	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr22.42305956.-	chr22	42305956	42305957	-	0	NA	"exon (NM_001207020, exon 4 of 4)"	"exon (NM_001207020, exon 4 of 4)"	-4715	NM_001207020	440829	Hs.526704	NM_001207020		SHISA8	C22orf17|Orf26	shisa homolog 8 (Xenopus laevis)	protein-coding
chr19.13303151.-	chr19	13303151	13303152	-	0	NA	Intergenic	AluSq2|SINE|Alu	-41869	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr3.15431313.-	chr3	15431313	15431314	-	0	NA	Intergenic	AluSp|SINE|Alu	-37729	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr9.135947012.-	chr9	135947012	135947013	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9647	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr20.61284930.-	chr20	61284930	61284931	-	0	NA	"intron (NM_016354, intron 1 of 11)"	"intron (NM_016354, intron 1 of 11)"	-11133	NM_016354	28231	Hs.235782	NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	"solute carrier organic anion transporter family, member 4A1"	protein-coding
chrX.153657094.+	chrX	153657094	153657095	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	116	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr19.33557618.+	chr19	33557618	33557619	+	0	NA	Intergenic	Intergenic	-1794	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr1.151124137.-	chr1	151124137	151124138	-	0	NA	Intergenic	AluSp|SINE|Alu	4968	NM_024575	79626	Hs.744751	NM_024575	ENSG00000163154	TNFAIP8L2	TIPE2	"tumor necrosis factor, alpha-induced protein 8-like 2"	protein-coding
chr15.100514149.-	chr15	100514149	100514150	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167017	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr1.32757856.+	chr1	32757856	32757857	+	0	NA	"intron (NM_004964, intron 1 of 13)"	CpG	148	NM_004964	3065	Hs.88556	NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
chr19.14156328.-	chr19	14156328	14156329	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13643	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chrX.13062316.-	chrX	13062316	13062317	-	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	-601	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr14.76577627.-	chr14	76577627	76577628	-	0	NA	Intergenic	AluSx1|SINE|Alu	40632	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr5.72904306.+	chr5	72904306	72904307	+	0	NA	Intergenic	AluSp|SINE|Alu	-17677	NM_001177693	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
chr19.8424350.+	chr19	8424350	8424351	+	0	NA	Intergenic	AluSg|SINE|Alu	-4661	NM_139314	51129	Hs.9613	NM_001039667	ENSG00000167772	ANGPTL4	ANGPTL2|ARP4|FIAF|HFARP|NL2|PGAR|pp1158	angiopoietin-like 4	protein-coding
chr7.1972263.-	chr7	1972263	1972264	-	0	NA	"intron (NM_001013836, intron 17 of 18)"	HAL1|LINE|L1	88374	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr15.58480972.+	chr15	58480972	58480973	+	0	NA	Intergenic	MIRc|SINE|MIR	50564	NM_020980	366	Hs.104624	NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1	aquaporin 9	protein-coding
chr14.51521318.-	chr14	51521318	51521319	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41104	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr4.48016914.-	chr4	48016914	48016915	-	0	NA	Intergenic	AluY|SINE|Alu	1877	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr10.135075434.-	chr10	135075434	135075435	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14310	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr7.936441.-	chr7	936441	936442	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20250	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr2.213546677.-	chr2	213546677	213546678	-	0	NA	Intergenic	AluSc8|SINE|Alu	143325	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr12.126371229.-	chr12	126371229	126371230	-	0	NA	Intergenic	AluY|SINE|Alu	-96691	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chr4.92938322.+	chr4	92938322	92938323	+	0	NA	Intergenic	AluY|SINE|Alu	-287228	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr14.105134376.+	chr14	105134376	105134377	+	0	NA	Intergenic	AluSz|SINE|Alu	9710	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr9.37025517.-	chr9	37025517	37025518	-	0	NA	"intron (NM_016734, intron 1 of 9)"	CpG	-8959	NM_016734	5079	Hs.654464	NM_016734		PAX5	BSAP	paired box 5	protein-coding
chr20.45162740.-	chr20	45162740	45162741	-	0	NA	Intergenic	MER52C|LTR|ERV1	-16473	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
chr21.45243664.+	chr21	45243664	45243665	+	0	NA	Intergenic	Intergenic	-11216	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr5.694027.+	chr5	694027	694028	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-517	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr17.20588558.-	chr17	20588558	20588559	-	0	NA	Intergenic	SVA_D|Other|Other	27201	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr8.67846476.-	chr8	67846476	67846477	-	0	NA	Intergenic	Intergenic	8699	NR_002599	641638	Hs.372680	NR_002599	ENSG00000245910	SNHG6	HBII-276HG|NCRNA00058|U87HG	small nucleolar RNA host gene 6 (non-protein coding)	miscRNA
chr19.14156273.+	chr19	14156273	14156274	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13698	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr2.131551992.+	chr2	131551992	131551993	+	0	NA	Intergenic	AluY|SINE|Alu	38128	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr22.44845318.+	chr22	44845318	44845319	+	0	NA	Intergenic	Intergenic	48687	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr7.3119910.+	chr7	3119910	3119911	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-36401	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr10.6985585.-	chr10	6985585	6985586	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164025	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chrX.153736339.+	chrX	153736339	153736340	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8227	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr10.14719536.+	chr10	14719536	14719537	+	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	97360	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr7.62939993.-	chr7	62939993	62939994	-	0	NA	Intergenic	AluYf4|SINE|Alu	80574	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr8.144512831.-	chr8	144512831	144512832	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	229	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr11.7603254.-	chr11	7603254	7603255	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15163	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr1.32679303.-	chr1	32679303	32679304	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4608	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr13.48030585.-	chr13	48030585	48030586	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544877	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr6.169424742.+	chr6	169424742	169424743	+	0	NA	Intergenic	CpG	229395	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr6.151771586.-	chr6	151771586	151771587	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1730	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr19.55693501.+	chr19	55693501	55693502	+	0	NA	"exon (NM_001161440, exon 17 of 18)"	"exon (NM_001161440, exon 17 of 18)"	-1781	NM_003180	6861	Hs.631566	NM_003180		SYT5	-	synaptotagmin V	protein-coding
chrX.70493598.-	chrX	70493598	70493599	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9444	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr4.161944156.-	chr4	161944156	161944157	-	0	NA	Intergenic	AluY|SINE|Alu	-1141030	NM_020116	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr1.149646777.-	chr1	149646777	149646778	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70324	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr1.6094712.-	chr1	6094712	6094713	-	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	-364	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr7.72900798.+	chr7	72900798	72900799	+	0	NA	"intron (NM_032408, intron 6 of 19)"	AluY|SINE|Alu	35817	NM_032408	9031	Hs.743372	NM_032408	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	"bromodomain adjacent to zinc finger domain, 1B"	protein-coding
chr7.47294018.+	chr7	47294018	47294019	+	0	NA	Intergenic	CpG	327724	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
chr10.73207999.+	chr10	73207999	73208000	+	0	NA	"intron (NM_022124, intron 3 of 67)"	"intron (NM_022124, intron 3 of 67)"	51308	NM_001171932	64072	Hs.656032	NM_001171930	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
chr12.48399234.+	chr12	48399234	48399235	+	0	NA	promoter-TSS (NM_033150)	promoter-TSS (NM_033150)	-949	NM_033150	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC	"collagen, type II, alpha 1"	protein-coding
chr9.93000167.-	chr9	93000167	93000168	-	0	NA	Intergenic	AluY|SINE|Alu	196386	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr1.197234049.-	chr1	197234049	197234050	-	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	3285	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chrM.6550.+	chrM	6550	6551	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.112808044.-	chr3	112808044	112808045	-	0	NA	Intergenic	AluYc|SINE|Alu	69489	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr1.183670822.-	chr1	183670822	183670823	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48374	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr1.31628171.-	chr1	31628171	31628172	-	0	NA	Intergenic	CpG	-84563	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr10.134034458.+	chr10	134034458	134034459	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34044	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr14.23845016.+	chr14	23845016	23845017	+	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	-1001	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr6.127839624.-	chr6	127839624	127839625	-	0	NA	"intron (NM_001012279, intron 1 of 11)"	"intron (NM_001012279, intron 1 of 11)"	-876	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr9.133320191.-	chr9	133320191	133320192	-	0	NA	promoter-TSS (NM_000050)	promoter-TSS (NM_000050)	-97	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
chr3.48918138.-	chr3	48918138	48918139	-	0	NA	"intron (NM_000387, intron 3 of 8)"	AluJb|SINE|Alu	-18288	NM_000387	788	Hs.13845	NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	"solute carrier family 25 (carnitine/acylcarnitine translocase), member 20"	protein-coding
chr8.6651224.+	chr8	6651224	6651225	+	0	NA	Intergenic	AluSx|SINE|Alu	-41852	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	LOC100652791	-	uncharacterized LOC100652791	miscRNA
chr16.544872.-	chr16	544872	544873	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20022	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr11.17822505.-	chr11	17822505	17822506	-	0	NA	"intron (NM_012139, intron 10 of 10)"	AluYk4|SINE|Alu	-65010	NM_004976	3746	Hs.552896	NM_001112741	ENSG00000129159	KCNC1	KV3.1|KV4|NGK2	"potassium voltage-gated channel, Shaw-related subfamily, member 1"	protein-coding
chr19.18180401.-	chr19	18180401	18180402	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17296	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr4.163164063.-	chr4	163164063	163164064	-	0	NA	Intergenic	AluY|SINE|Alu	78877	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr19.35418157.-	chr19	35418157	35418158	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-350	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr19.27731982.-	chr19	27731982	27731983	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-552866	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr2.136760811.-	chr2	136760811	136760812	-	0	NA	Intergenic	AluSq2|SINE|Alu	17589	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr12.105389742.+	chr12	105389742	105389743	+	0	NA	Intergenic	AluY|SINE|Alu	9644	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr1.59012562.+	chr1	59012562	59012563	+	0	NA	promoter-TSS (NM_145243)	promoter-TSS (NM_145243)	-116	NM_145243	115209	Hs.425769	NM_145243	ENSG00000162600	OMA1	2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1	OMA1 zinc metallopeptidase homolog (S. cerevisiae)	protein-coding
chr11.69451961.-	chr11	69451961	69451962	-	0	NA	Intergenic	CpG	3912	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr20.13910441.-	chr20	13910441	13910442	-	0	NA	"intron (NR_073207, intron 3 of 18)"	AluY|SINE|Alu	-60824	NR_073206	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding
chr1.17034284.+	chr1	17034284	17034285	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12368	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr10.104238447.+	chr10	104238447	104238448	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17277	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr11.67955478.+	chr11	67955478	67955479	+	0	NA	"intron (NM_016028, intron 2 of 9)"	"intron (NM_016028, intron 2 of 9)"	25306	NM_017635	51111	Hs.632120	NM_016028	ENSG00000110066	SUV420H1	CGI85|KMT5B	suppressor of variegation 4-20 homolog 1 (Drosophila)	protein-coding
chr4.4165421.+	chr4	4165421	4165422	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	63200	NM_177998	133060	Hs.534544	NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
chr8.117309734.+	chr8	117309734	117309735	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27563	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr1.155579894.+	chr1	155579894	155579895	+	0	NA	promoter-TSS (NM_018116)	promoter-TSS (NM_018116)	-67	NR_046295	55154	Hs.656547	NM_001256532	ENSG00000125459	MSTO1	MST	misato homolog 1 (Drosophila)	protein-coding
chr1.59041997.-	chr1	59041997	59041998	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1169	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr8.133680834.+	chr8	133680834	133680835	+	0	NA	"intron (NR_073525, intron 1 of 12)"	AluY|SINE|Alu	7029	NR_073525	23639	Hs.591865	NM_012472	ENSG00000129295	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
chr17.73161387.-	chr17	73161387	73161388	-	0	NA	Intergenic	AluY|SINE|Alu	10612	NM_016185	51155	Hs.532803	NM_001002032	ENSG00000189159	HN1	ARM2|HN1A	hematological and neurological expressed 1	protein-coding
chr11.100596520.-	chr11	100596520	100596521	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38113	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr1.240947763.+	chr1	240947763	240947764	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172301	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr17.42774543.-	chr17	42774543	42774544	-	0	NA	Intergenic	AluY|SINE|Alu	7378	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chr4.166248585.+	chr4	166248585	166248586	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-233	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr11.130241722.-	chr11	130241722	130241723	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56817	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr8.125234412.+	chr8	125234412	125234413	+	0	NA	Intergenic	AluSx3|SINE|Alu	150528	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr17.20512247.-	chr17	20512247	20512248	-	0	NA	Intergenic	AluY|SINE|Alu	-29210	NM_001190790	256223	Hs.131916	NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15-like 2	protein-coding
chr12.121124735.+	chr12	121124735	121124736	+	0	NA	promoter-TSS (NM_014730)	promoter-TSS (NM_014730)	-214	NM_014730	9761	Hs.507074	NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
chr3.47601187.-	chr3	47601187	47601188	-	0	NA	Intergenic	Intergenic	-19172	NM_001206944	10675	Hs.45127	NM_001206942		CSPG5	NGC	chondroitin sulfate proteoglycan 5 (neuroglycan C)	protein-coding
chr12.77339539.-	chr12	77339539	77339540	-	0	NA	Intergenic	AluY|SINE|Alu	66740	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr12.131551521.+	chr12	131551521	131551522	+	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	-98035	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr4.38190472.+	chr4	38190472	38190473	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	68897	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr11.507346.-	chr11	507346	507347	-	0	NA	promoter-TSS (NM_002939)	promoter-TSS (NM_002939)	63	NM_203387	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
chr4.57633192.-	chr4	57633192	57633193	-	0	NA	Intergenic	AluSc8|SINE|Alu	-54447	NR_073417	6691	Hs.98243	NM_001271718	ENSG00000128040	SPINK2	HUSI-II	"serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)"	protein-coding
chr22.46692341.-	chr22	46692341	46692342	-	0	NA	promoter-TSS (NM_016426)	promoter-TSS (NM_016426)	-216	NR_024009	150384	Hs.348663	NR_024009		CN5H6.4	-	uncharacterized LOC150384	miscRNA
chr1.99544227.-	chr1	99544227	99544228	-	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	73778	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr15.63892651.+	chr15	63892651	63892652	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	375	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr4.96098061.+	chr4	96098061	96098062	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85419	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr21.45930862.+	chr21	45930862	45930863	+	0	NA	"intron (NM_001272037, intron 10 of 12)"	"intron (NM_001272037, intron 10 of 12)"	-6236	NR_026548	114043	Hs.592163	NM_153204		C21orf90	-	chromosome 21 open reading frame 90	miscRNA
chr22.38498875.+	chr22	38498875	38498876	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7801	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr3.142233497.-	chr3	142233497	142233498	-	0	NA	"intron (NM_001184, intron 25 of 46)"	AluSx|SINE|Alu	-64171	NM_001184	545	Hs.271791	NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ataxia telangiectasia and Rad3 related	protein-coding
chr20.46019501.-	chr20	46019501	46019502	-	0	NA	Intergenic	AluY|SINE|Alu	34027	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr1.113336822.-	chr1	113336822	113336823	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73633	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr20.55841923.-	chr20	55841923	55841924	-	0	NA	promoter-TSS (NM_001719)	promoter-TSS (NM_001719)	216	NM_001719	655	Hs.473163	NM_001719	ENSG00000101144	BMP7	OP-1	bone morphogenetic protein 7	protein-coding
chr10.104255199.-	chr10	104255199	104255200	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7313	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr1.218165477.+	chr1	218165477	218165478	+	0	NA	Intergenic	AluSq|SINE|Alu	99235	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr1.38342282.+	chr1	38342282	38342283	+	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	-16990	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr10.104209698.+	chr10	104209698	104209699	+	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	124	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr17.21825585.-	chr17	21825585	21825586	-	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	-215	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr10.21183601.-	chr10	21183601	21183602	-	0	NA	"intron (NM_006393, intron 2 of 27)"	AluY|SINE|Alu	-2930	NM_006393	10529	Hs.5025	NM_001173484	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding
chr3.140823556.-	chr3	140823556	140823557	-	0	NA	"intron (NM_080862, intron 2 of 2)"	"intron (NM_080862, intron 2 of 2)"	-52813	NM_080862	92369	Hs.655112	NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
chr14.73941557.+	chr14	73941557	73941558	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16087	NM_024644	79697	Hs.509916	NM_024644		C14orf169	MAPJD|NO66|ROX	chromosome 14 open reading frame 169	protein-coding
chr13.50297687.+	chr13	50297687	50297688	+	0	NA	"intron (NM_002267, intron 7 of 16)"	AluSg7|SINE|Alu	-32064	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr1.95064909.+	chr1	95064909	95064910	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-57496	NM_001993	2152	Hs.62192	NM_001178096	ENSG00000117525	F3	CD142|TF|TFA	"coagulation factor III (thromboplastin, tissue factor)"	protein-coding
chrM.6384.+	chrM	6384	6385	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.86337842.+	chr16	86337842	86337843	+	0	NA	Intergenic	CpG	17805	NR_038438	146513	Hs.434338	NR_038438	ENSG00000268532	LOC146513	-	uncharacterized LOC146513	miscRNA
chr5.31622029.+	chr5	31622029	31622030	+	0	NA	Intergenic	AluSq|SINE|Alu	89656	NM_018356	55322	Hs.519246	NM_018356	ENSG00000082213	C5orf22	-	chromosome 5 open reading frame 22	protein-coding
chr16.4537722.-	chr16	4537722	4537723	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8137	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr10.135075433.-	chr10	135075433	135075434	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14309	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr14.23845013.-	chr14	23845013	23845014	-	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	1004	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr11.4258895.+	chr11	4258895	4258896	+	0	NA	Intergenic	SVA_B|Other|Other	50513	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr2.25554966.+	chr2	25554966	25554967	+	0	NA	"intron (NM_175629, intron 1 of 22)"	"intron (NM_175629, intron 1 of 22)"	-3376	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301	microRNA 1301	miscRNA
chrX.53111667.+	chrX	53111667	53111668	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	125	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr17.18785198.-	chr17	18785198	18785199	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16416	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr4.1626816.+	chr4	1626816	1626817	+	0	NA	Intergenic	CpG	58902	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr21.47403573.-	chr21	47403573	47403574	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1910	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr17.810088.+	chr17	810088	810089	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42737	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr15.91697580.+	chr15	91697580	91697581	+	0	NA	"intron (NM_014848, intron 2 of 13)"	L2a|LINE|L2	54041	NM_014848	9899	Hs.21754	NM_001167580	ENSG00000185518	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding
chr9.136913052.-	chr9	136913052	136913053	-	0	NA	"intron (NM_007371, intron 6 of 11)"	CpG	-20089	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr9.90885130.-	chr9	90885130	90885131	-	0	NA	Intergenic	AluJb|SINE|Alu	118167	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr12.38493579.+	chr12	38493579	38493580	+	0	NA	Intergenic	Intergenic	-216978	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr1.16261163.-	chr1	16261163	16261164	-	0	NA	"exon (NM_015001, exon 11 of 15)"	"exon (NM_015001, exon 11 of 15)"	-41464	NM_003443	7709	Hs.433764	NM_001242884	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
chr16.9185067.-	chr16	9185067	9185068	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	470	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr1.10720450.-	chr1	10720450	10720451	-	0	NA	"exon (NM_017766, exon 6 of 16)"	"exon (NM_017766, exon 6 of 16)"	-136283	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr19.40696458.-	chr19	40696458	40696459	-	0	NA	Intergenic	AluSx|SINE|Alu	1193	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr15.89721763.-	chr15	89721763	89721764	-	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	-43159	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr16.4835212.-	chr16	4835212	4835213	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3186	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr16.5139145.+	chr16	5139145	5139146	+	0	NA	"exon (NM_201400, exon 7 of 8)"	"exon (NM_201400, exon 7 of 8)"	8644	NM_201400	196483	Hs.592086	NM_201400	ENSG00000118894	FAM86A	-	"family with sequence similarity 86, member A"	protein-coding
chr15.22944504.+	chr15	22944504	22944505	+	0	NA	"intron (NM_014608, intron 11 of 30)"	"intron (NM_014608, intron 11 of 30)"	-11251	NM_001033028	23191	Hs.26704	NM_001033028	ENSG00000068793	CYFIP1	P140SRA-1|SHYC|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
chr2.81982292.+	chr2	81982292	81982293	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101635	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr11.32609660.-	chr11	32609660	32609661	-	0	NA	"intron (NM_006360, intron 2 of 10)"	AluSg4|SINE|Alu	-4347	NM_006360	10480	Hs.502244	NM_006360		EIF3M	B5|PCID1|TANGO7|hfl-B5	"eukaryotic translation initiation factor 3, subunit M"	protein-coding
chr22.49948702.+	chr22	49948702	49948703	+	0	NA	Intergenic	Intergenic	102488	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr18.33543823.+	chr18	33543823	33543824	+	0	NA	Intergenic	AluY|SINE|Alu	-8765	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr9.8857415.-	chr9	8857415	8857416	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123469	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.158504091.-	chr7	158504091	158504092	-	0	NA	Intergenic	AluY|SINE|Alu	6571	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr9.138397752.-	chr9	138397752	138397753	-	0	NA	Intergenic	Intergenic	-5275	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr2.26193299.-	chr2	26193299	26193300	-	0	NA	"intron (NM_002254, intron 1 of 7)"	AluSq2|SINE|Alu	-12144	NM_002254	3797	Hs.21611	NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
chr3.47744712.+	chr3	47744712	47744713	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78693	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr11.68671198.+	chr11	68671198	68671199	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	105	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr1.3379716.-	chr1	3379716	3379717	-	0	NA	"exon (NM_014448, exon 2 of 15)"	"exon (NM_014448, exon 2 of 15)"	-8569	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr3.17496088.+	chr3	17496088	17496089	+	0	NA	"intron (NM_014744, intron 3 of 21)"	AluY|SINE|Alu	245424	NM_001134381	9779	Hs.475629	NM_001134380	ENSG00000131374	TBC1D5	-	"TBC1 domain family, member 5"	protein-coding
chr16.53227216.-	chr16	53227216	53227217	-	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	-138271	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr12.32064869.-	chr12	32064869	32064870	-	0	NA	Intergenic	AluY|SINE|Alu	47484	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr1.8021845.+	chr1	8021845	8021846	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	131	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr6.166934802.-	chr6	166934802	166934803	-	0	NA	"intron (NM_001006932, intron 4 of 21)"	"intron (NM_001006932, intron 4 of 21)"	11881	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	miscRNA
chr18.46969362.+	chr18	46969362	46969363	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17717	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr22.51001381.+	chr22	51001381	51001382	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-53	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr2.109090634.-	chr2	109090634	109090635	-	0	NA	"intron (NM_181453, intron 7 of 22)"	L2c|LINE|L2	-25057	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr17.810099.+	chr17	810099	810100	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42748	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr14.99946829.-	chr14	99946829	99946830	-	0	NA	promoter-TSS (NM_001099402)	promoter-TSS (NM_001099402)	-397	NM_032233	84193	Hs.510407	NM_032233	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding
chr2.14112671.-	chr2	14112671	14112672	-	0	NA	Intergenic	AluY|SINE|Alu	660139	NM_145175	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	"family with sequence similarity 84, member A"	protein-coding
chr10.12223696.-	chr10	12223696	12223697	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14265	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr5.172640614.-	chr5	172640614	172640615	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-21701	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr13.114069125.-	chr13	114069125	114069126	-	0	NA	Intergenic	AluSx1|SINE|Alu	-34332	NM_199162	113622	Hs.98669	NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
chr6.24720987.-	chr6	24720987	24720988	-	0	NA	Intergenic	CpG	1584	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr12.34492669.+	chr12	34492669	34492670	+	0	NA	Intergenic	GSATII|Satellite|centr	317453	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr11.64120565.-	chr11	64120565	64120566	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6060	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr1.32122144.+	chr1	32122144	32122145	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11306	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr4.114652866.+	chr4	114652866	114652867	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30217	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr7.91764149.+	chr7	91764149	91764150	+	0	NA	promoter-TSS (NM_000786)	promoter-TSS (NM_000786)	-90	NM_001146152	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	"cytochrome P450, family 51, subfamily A, polypeptide 1"	protein-coding
chr10.324351.-	chr10	324351	324352	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98417	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr9.10974631.-	chr9	10974631	10974632	-	0	NA	Intergenic	L1PBa|LINE|L1	361908	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chrX.107069849.+	chrX	107069849	107069850	+	0	NA	"intron (NM_012216, intron 1 of 9)"	CpG	765	NM_052817	11043	Hs.12256	NM_012216		MID2	FXY2|RNF60|TRIM1	midline 2	protein-coding
chr7.1570463.-	chr7	1570463	1570464	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-95	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr1.227498547.-	chr1	227498547	227498548	-	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	-7279	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chr9.88290727.+	chr9	88290727	88290728	+	0	NA	"intron (NM_015239, intron 6 of 25)"	AluSx3|SINE|Alu	66217	NM_015239	23287	Hs.719980	NM_015239	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
chr2.15359903.-	chr2	15359903	15359904	-	0	NA	"intron (NM_015909, intron 47 of 51)"	SVA_E|Other|Other	-341569	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
chr22.38336375.+	chr22	38336375	38336376	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13279	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr7.56888244.+	chr7	56888244	56888245	+	0	NA	Intergenic	Intergenic	61595	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr21.34914887.+	chr21	34914887	34914888	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	308	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr3.14644511.+	chr3	14644511	14644512	+	0	NA	Intergenic	CpG	-48742	NM_016474	51244	Hs.517820	NM_016474	ENSG00000154781	CCDC174	C3orf19	coiled-coil domain containing 174	protein-coding
chr3.85742636.+	chr3	85742636	85742637	+	0	NA	"intron (NM_001256503, intron 2 of 9)"	AluYk4|SINE|Alu	-32996	NM_153184	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr6.124674757.+	chr6	124674757	124674758	+	0	NA	"intron (NM_001040214, intron 2 of 6)"	AluY|SINE|Alu	549688	NM_001040214	154215	Hs.656604	NM_001040214	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Na+/K+ transporting ATPase interacting 2	protein-coding
chr19.34394395.-	chr19	34394395	34394396	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106644	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr17.80642899.-	chr17	80642899	80642900	-	0	NA	"intron (NM_006822, intron 1 of 5)"	AluSq2|SINE|Alu	-13699	NM_006822	10966	Hs.484068	NM_006822		RAB40B	RAR|SEC4L	"RAB40B, member RAS oncogene family"	protein-coding
chr7.5355979.-	chr7	5355979	5355980	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33418	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr9.36859980.+	chr9	36859980	36859981	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4325	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr6.157468596.+	chr6	157468596	157468597	+	0	NA	"intron (NM_020732, intron 8 of 19)"	C-rich|Low_complexity|Low_complexity	276657	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr7.98616935.+	chr7	98616935	98616936	+	0	NA	Intergenic	AluSq2|SINE|Alu	124808	NM_020429	57154	Hs.189329	NM_001199847	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
chr3.38022202.-	chr3	38022202	38022203	-	0	NA	"intron (NM_001008392, intron 7 of 7)"	"intron (NM_001008392, intron 7 of 7)"	-11307	NR_029499	407015		NR_029499		MIR26A1	MIR26A|MIRN26A1	microRNA 26a-1	miscRNA
chr3.13876359.+	chr3	13876359	13876360	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45259	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr1.59041959.-	chr1	59041959	59041960	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1207	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr9.1141618.+	chr9	1141618	1141619	+	0	NA	Intergenic	AluY|SINE|Alu	90998	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr7.74447121.+	chr7	74447121	74447122	+	0	NA	Intergenic	AluSx1|SINE|Alu	42578	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr19.18794731.-	chr19	18794731	18794732	-	0	NA	"intron (NM_015321, intron 1 of 13)"	CpG	-306	NM_001098482	23373	Hs.371096	NM_025021	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
chr16.86786529.-	chr16	86786529	86786530	-	0	NA	Intergenic	Intergenic	-174414	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr17.810079.+	chr17	810079	810080	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42728	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr19.23474355.+	chr19	23474355	23474356	+	0	NA	Intergenic	AluSx|SINE|Alu	-41183	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr2.131913084.-	chr2	131913084	131913085	-	0	NA	Intergenic	Intergenic	-50664	NM_017958	55041	Hs.708368	NM_001031706	ENSG00000115762	PLEKHB2	EVT2	"pleckstrin homology domain containing, family B (evectins) member 2"	protein-coding
chr15.75870975.-	chr15	75870975	75870976	-	0	NA	"intron (NM_002833, intron 1 of 12)"	CpG	-650	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	"protein tyrosine phosphatase, non-receptor type 9"	protein-coding
chr14.105046010.+	chr14	105046010	105046011	+	0	NA	promoter-TSS (NM_001008404)	promoter-TSS (NM_001008404)	-46	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chrX.70579428.+	chrX	70579428	70579429	+	0	NA	"intron (NR_001568, intron 2 of 3)"	AluJb|SINE|Alu	-6686	NM_138923	6872	Hs.158560	NM_004606	ENSG00000147133	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|N-TAF1|NSCL2|OF|P250|TAF2A|TAFII250|XDP	"TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa"	protein-coding
chr6.168352168.+	chr6	168352168	168352169	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25451	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chrX.145183524.+	chrX	145183524	145183525	+	0	NA	Intergenic	AluJb|SINE|Alu	-74134	NR_030581	100126341		NR_030581	ENSG00000216056	MIR891A	MIRN891A	microRNA 891a	miscRNA
chr7.936474.-	chr7	936474	936475	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20283	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr10.104209695.+	chr10	104209695	104209696	+	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	121	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr6.168159664.-	chr6	168159664	168159665	-	0	NA	Intergenic	Intergenic	-37875	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr11.68671233.+	chr11	68671233	68671234	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	70	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr5.76115164.-	chr5	76115164	76115165	-	0	NA	"intron (NM_005242, intron 1 of 1)"	"intron (NM_005242, intron 1 of 1)"	-331	NM_005242	2150	Hs.744181	NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	coagulation factor II (thrombin) receptor-like 1	protein-coding
chr14.101160839.+	chr14	101160839	101160840	+	0	NA	Intergenic	Intergenic	-32363	NM_003836	8788	Hs.533717	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta-like 1 homolog (Drosophila)	protein-coding
chr21.18665060.-	chr21	18665060	18665061	-	0	NA	Intergenic	SVA_F|Other|Other	146148	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	miscRNA
chr3.4664382.+	chr3	4664382	4664383	+	0	NA	"intron (NM_002222, intron 4 of 57)"	AluSc|SINE|Alu	128892	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	miscRNA
chr16.31932528.+	chr16	31932528	31932529	+	0	NA	Intergenic	AluY|SINE|Alu	47449	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr16.30960467.-	chr16	30960467	30960468	-	0	NA	promoter-TSS (NM_152288)	promoter-TSS (NM_152288)	-62	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr3.194342228.-	chr3	194342228	194342229	-	0	NA	"intron (NM_001166305, intron 5 of 10)"	"intron (NM_001166305, intron 5 of 10)"	-11922	NM_001166305	93109	Hs.478729	NM_001011655	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
chr7.128141942.-	chr7	128141942	128141943	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25159	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr14.101679065.-	chr14	101679065	101679066	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142817	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr19.35418194.+	chr19	35418194	35418195	+	0	NA	"intron (NM_001099438, intron 1 of 4)"	CpG	387	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr12.30327145.+	chr12	30327145	30327146	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389453	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr10.115934207.-	chr10	115934207	115934208	-	0	NA	promoter-TSS (NR_031747)	promoter-TSS (NR_031747)	-157	NM_018017	55088	Hs.603328	NM_018017		C10orf118	-	chromosome 10 open reading frame 118	protein-coding
chr17.15084389.-	chr17	15084389	15084390	-	0	NA	Intergenic	AluY|SINE|Alu	-70624	NR_039884	100616125		NR_039884		MIR4731	-	microRNA 4731	miscRNA
chr19.14518862.-	chr19	14518862	14518863	-	0	NA	TTS (NR_038336)	TTS (NR_038336)	-11044	NR_038336	10212	Hs.311609	NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	protein-coding
chr2.11411911.-	chr2	11411911	11411912	-	0	NA	"intron (NM_004850, intron 3 of 32)"	AluY|SINE|Alu	-72800	NM_004850	9475	Hs.681743	NM_004850		ROCK2	ROCK-II	"Rho-associated, coiled-coil containing protein kinase 2"	protein-coding
chr15.92290097.-	chr15	92290097	92290098	-	0	NA	Intergenic	AluY|SINE|Alu	106841	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr19.7752399.+	chr19	7752399	7752400	+	0	NA	Intergenic	MIR|SINE|MIR	6692	NM_001042462	126003	Hs.432413	NM_001042461	ENSG00000181029	TRAPPC5	TRS31	trafficking protein particle complex 5	protein-coding
chr2.240402083.-	chr2	240402083	240402084	-	0	NA	Intergenic	Intergenic	79440	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr1.32679301.+	chr1	32679301	32679302	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4606	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr1.31586347.-	chr1	31586347	31586348	-	0	NA	Intergenic	AluY|SINE|Alu	47783	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr9.7934811.-	chr9	7934811	7934812	-	0	NA	Intergenic	AluY|SINE|Alu	135012	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr19.3644502.+	chr19	3644502	3644503	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17689	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr11.3013218.-	chr11	3013218	3013219	-	0	NA	"intron (NM_005969, intron 1 of 15)"	CpG	-389	NM_005969	4676	Hs.731784	NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1-like 4	protein-coding
chr9.16855813.+	chr9	16855813	16855814	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	14973	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr7.33164260.+	chr7	33164260	33164261	+	0	NA	Intergenic	AluYf5|SINE|Alu	-4892	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr5.22326475.-	chr5	22326475	22326476	-	0	NA	"intron (NM_004061, intron 3 of 14)"	AluY|SINE|Alu	-184014	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr7.5558071.+	chr7	5558071	5558072	+	0	NA	Intergenic	AluYc|SINE|Alu	-4672	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr20.37036051.-	chr20	37036051	37036052	-	0	NA	Intergenic	SVA_B|Other|Other	-17927	NR_002910	26776	Hs.743872	NR_002910	ENSG00000201416	SNORA71B	RNU71B|U71b	"small nucleolar RNA, H/ACA box 71B"	snoRNA
chr20.44451701.-	chr20	44451701	44451702	-	0	NA	TTS (NM_003279)	TTS (NM_003279)	-4252	NM_003279	7125	Hs.182421	NM_003279	ENSG00000101470	TNNC2	-	troponin C type 2 (fast)	protein-coding
chr20.1317912.+	chr20	1317912	1317913	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-8033	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr8.48985935.+	chr8	48985935	48985936	+	0	NA	Intergenic	AluSq2|SINE|Alu	64940	NM_003350	7336	Hs.491695	NM_003350		UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding
chr7.13141800.-	chr7	13141800	13141801	-	0	NA	Intergenic	SVA_D|Other|Other	-414889	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr19.10408163.+	chr19	10408163	10408164	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7508	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chrX.153657079.+	chrX	153657079	153657080	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	101	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr1.11960049.+	chr1	11960049	11960050	+	0	NA	Intergenic	AluSc8|SINE|Alu	26436	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
chr7.94732956.+	chr7	94732956	94732957	+	0	NA	"intron (NM_001166160, intron 2 of 19)"	AluY|SINE|Alu	193746	NM_001166161	55607	Hs.21816	NM_001166160	ENSG00000158528	PPP1R9A	NRB1|NRBI|Neurabin-I	"protein phosphatase 1, regulatory subunit 9A"	protein-coding
chr16.440469.+	chr16	440469	440470	+	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	-6723	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr4.3520917.+	chr4	3520917	3520918	+	0	NA	"intron (NM_002337, intron 3 of 7)"	"intron (NM_002337, intron 3 of 7)"	13307	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr21.34914907.+	chr21	34914907	34914908	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	288	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr22.41521430.-	chr22	41521430	41521431	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32816	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr17.72262228.+	chr17	72262228	72262229	+	0	NA	Intergenic	AluJb|SINE|Alu	-8158	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr14.34924182.-	chr14	34924182	34924183	-	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	-7286	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr11.86267753.-	chr11	86267753	86267754	-	0	NA	"intron (NM_001014811, intron 2 of 13)"	"intron (NM_001014811, intron 2 of 13)"	-115487	NM_001014811	10873	Hs.199743	NM_001014811	ENSG00000151376	ME3	NADP-ME	"malic enzyme 3, NADP(+)-dependent, mitochondrial"	protein-coding
chrX.68956255.+	chrX	68956255	68956256	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120344	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr2.79811938.+	chr2	79811938	79811939	+	0	NA	"intron (NM_001164883, intron 1 of 16)"	AluSq2|SINE|Alu	64547	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr9.76965964.-	chr9	76965964	76965965	-	0	NA	Intergenic	AluSp|SINE|Alu	146288	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr13.113242534.-	chr13	113242534	113242535	-	0	NA	promoter-TSS (NM_006322)	promoter-TSS (NM_006322)	53	NM_006322	10426	Hs.595145	NM_006322	ENSG00000126216	TUBGCP3	GCP3|SPBC98|Spc98p	"tubulin, gamma complex associated protein 3"	protein-coding
chr12.56127559.+	chr12	56127559	56127560	+	0	NA	Intergenic	AluSg|SINE|Alu	-4102	NM_001257389	967	Hs.445570	NM_001257389	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
chr9.138959058.-	chr9	138959058	138959059	-	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	-28073	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr22.51001320.-	chr22	51001320	51001321	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-8	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr3.160673523.-	chr3	160673523	160673524	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149160	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chrX.91037195.+	chrX	91037195	91037196	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2935	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr11.49047091.+	chr11	49047091	49047092	+	0	NA	Intergenic	AluY|SINE|Alu	-6061	NM_001206626	283116	Hs.448644	NM_001206626	ENSG00000182053	TRIM49B	-	tripartite motif containing 49B	protein-coding
chr9.128842656.-	chr9	128842656	128842657	-	0	NA	Intergenic	LTR7|LTR|ERV1	246467	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr16.11747041.-	chr16	11747041	11747042	-	0	NA	Intergenic	AluSx1|SINE|Alu	15248	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr10.120841966.-	chr10	120841966	120841967	-	0	NA	Intergenic	AluSx3|SINE|Alu	1632	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr11.93395088.-	chr11	93395088	93395089	-	0	NA	"intron (NM_033395, intron 1 of 29)"	CpG	-272	NM_033395	85459	Hs.458418	NM_033395	ENSG00000166004	KIAA1731	-	KIAA1731	protein-coding
chr18.41408412.+	chr18	41408412	41408413	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550797	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr1.10727943.+	chr1	10727943	10727944	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128790	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr8.33580501.+	chr8	33580501	33580502	+	0	NA	Intergenic	CpG	-123062	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
chr22.18532605.-	chr22	18532605	18532606	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20454	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr12.58001382.-	chr12	58001382	58001383	-	0	NA	"exon (NM_178502, exon 5 of 7)"	"exon (NM_178502, exon 5 of 7)"	2581	NM_001111270	115557	Hs.61581	NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding
chr20.59828813.+	chr20	59828813	59828814	+	0	NA	"intron (NM_001794, intron 1 of 15)"	CpG	1331	NM_001794	1002	Hs.473231	NM_001252338		CDH4	CAD4|RCAD	"cadherin 4, type 1, R-cadherin (retinal)"	protein-coding
chr1.2157719.-	chr1	2157719	2157720	-	0	NA	Intergenic	AluJb|SINE|Alu	2415	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr21.45559650.+	chr21	45559650	45559651	+	0	NA	"intron (NM_198155, intron 4 of 5)"	MER21A|LTR|ERVL	6156	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr17.79478917.+	chr17	79478917	79478918	+	0	NA	"intron (NR_037688, intron 3 of 6)"	CpG	975	NR_037688	71	Hs.706229	NM_001199954	ENSG00000184009	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26	"actin, gamma 1"	protein-coding
chr9.72433078.+	chr9	72433078	72433079	+	0	NA	Intergenic	AluY|SINE|Alu	2577	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr4.163164064.+	chr4	163164064	163164065	+	0	NA	Intergenic	AluY|SINE|Alu	-78878	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr18.9127659.+	chr18	9127659	9127660	+	0	NA	"intron (NM_021074, intron 7 of 7)"	AluY|SINE|Alu	-9092	NM_015208	23253	Hs.464585	NM_001083625	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
chr13.45945064.-	chr13	45945064	45945065	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29584	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr7.5355895.-	chr7	5355895	5355896	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33334	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr19.58963027.-	chr19	58963027	58963028	-	0	NA	promoter-TSS (NM_207395)	promoter-TSS (NM_207395)	-56	NM_207395	388569	Hs.186970	NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
chr16.924594.-	chr16	924594	924595	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69151	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr19.50721000.+	chr19	50721000	50721001	+	0	NA	"exon (NM_001077186, exon 3 of 42)"	"exon (NM_001077186, exon 3 of 42)"	14115	NM_001145809	79784	Hs.467142	NM_001077186	ENSG00000105357	MYH14	DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	"myosin, heavy chain 14, non-muscle"	protein-coding
chr3.133028705.+	chr3	133028705	133028706	+	0	NA	"intron (NM_023943, intron 3 of 5)"	AluYa5|SINE|Alu	-90085	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|LIFL-L|PHAKOSIN	"beaded filament structural protein 2, phakinin"	protein-coding
chr4.797467.-	chr4	797467	797468	-	0	NA	"intron (NM_006651, intron 2 of 3)"	AluYc|SINE|Alu	21831	NR_036511	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	miscRNA
chrX.144902910.-	chrX	144902910	144902911	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-44	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr19.267154.+	chr19	267154	267155	+	0	NA	Intergenic	CpG	24015	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr16.33730695.-	chr16	33730695	33730696	-	0	NA	Intergenic	CpG	167452	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76	-	"RNA, U6 small nuclear 76"	snRNA
chr1.90150840.+	chr1	90150840	90150841	+	0	NA	"intron (NM_032270, intron 1 of 2)"	AluYb8|SINE|Alu	52196	NM_032270	84230	Hs.412836	NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	"leucine rich repeat containing 8 family, member C"	protein-coding
chr22.50871777.-	chr22	50871777	50871778	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41687	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr1.235668417.-	chr1	235668417	235668418	-	0	NA	promoter-TSS (NM_152490)	promoter-TSS (NM_152490)	636	NM_152490	148789	Hs.743413	NM_001277155		B3GALNT2	B3GalNAc-T2	"beta-1,3-N-acetylgalactosaminyltransferase 2"	protein-coding
chr13.100409969.+	chr13	100409969	100409970	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluSq|SINE|Alu	114656	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr5.39649158.+	chr5	39649158	39649159	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223823	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr21.45228312.-	chr21	45228312	45228313	-	0	NA	"intron (NR_026961, intron 1 of 1)"	"intron (NR_026961, intron 1 of 1)"	-4136	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr22.46782385.+	chr22	46782385	46782386	+	0	NA	"exon (NM_014246, exon 19 of 35)"	"exon (NM_014246, exon 19 of 35)"	51087	NM_018006	55687	Hs.439524	NM_018006	ENSG00000100416	TRMU	MTO2|MTU1|TRMT|TRMT1|TRNT1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding
chr13.100353708.+	chr13	100353708	100353709	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluY|SINE|Alu	58395	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr7.158268148.+	chr7	158268148	158268149	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57357	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chrX.81762757.+	chrX	81762757	81762758	+	0	NA	Intergenic	AluY|SINE|Alu	-1000512	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr16.863419.-	chr16	863419	863420	-	0	NA	"exon (NM_001013638, exon 3 of 3)"	"exon (NM_001013638, exon 3 of 3)"	-7976	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr8.145159381.+	chr8	145159381	145159382	+	0	NA	promoter-TSS (NR_038270)	promoter-TSS (NR_038270)	76	NM_032272	84232	Hs.19673	NM_032272	ENSG00000179632	MAF1	-	MAF1 homolog (S. cerevisiae)	protein-coding
chr12.121346458.-	chr12	121346458	121346459	-	0	NA	Intergenic	AluSp|SINE|Alu	4303	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr2.159693878.+	chr2	159693878	159693879	+	0	NA	Intergenic	AluSp|SINE|Alu	42049	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr3.15431345.-	chr3	15431345	15431346	-	0	NA	Intergenic	AluSp|SINE|Alu	-37697	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr16.18931524.+	chr16	18931524	18931525	+	0	NA	"intron (NM_015092, intron 1 of 62)"	AluSq2|SINE|Alu	6202	NM_015092	23049	Hs.460179	NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	"smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)"	protein-coding
chr2.61595294.+	chr2	61595294	61595295	+	0	NA	"intron (NM_014709, intron 10 of 79)"	AluSc|SINE|Alu	49218	NR_003707	100124537	Hs.675825	NR_003707		SNORA70B	-	"small nucleolar RNA, H/ACA box 70B"	snoRNA
chr1.25736540.+	chr1	25736540	25736541	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10823	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr2.240129742.-	chr2	240129742	240129743	-	0	NA	"intron (NM_006037, intron 3 of 26)"	AluY|SINE|Alu	12589	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	miscRNA
chr22.38336358.-	chr22	38336358	38336359	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13296	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr8.143373424.+	chr8	143373424	143373425	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93707	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr3.185552085.-	chr3	185552085	185552086	-	0	NA	Intergenic	AluYa5|SINE|Alu	9258	NM_001007225	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr9.80898818.-	chr9	80898818	80898819	-	0	NA	Intergenic	LTR12|LTR|ERV1	13241	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr7.139162635.-	chr7	139162635	139162636	-	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	-5822	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr8.7414106.+	chr8	7414106	7414107	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2520	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr8.104115244.+	chr8	104115244	104115245	+	0	NA	Intergenic	AluSp|SINE|Alu	-37677	NM_024812	79870	Hs.533446	NM_001024372	ENSG00000164929	BAALC	-	"brain and acute leukemia, cytoplasmic"	protein-coding
chr5.32689653.-	chr5	32689653	32689654	-	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	21090	NM_001204376	4883	Hs.619466	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
chr20.57797771.+	chr20	57797771	57797772	+	0	NA	"intron (NM_178457, intron 3 of 4)"	"intron (NM_178457, intron 3 of 4)"	31696	NM_178457	128611	Hs.473204	NM_178457	ENSG00000124203	ZNF831	C20orf174|dJ492J12.1	zinc finger protein 831	protein-coding
chr1.227982882.+	chr1	227982882	227982883	+	0	NA	Intergenic	Intergenic	-20536	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr13.31024093.-	chr13	31024093	31024094	-	0	NA	Intergenic	AluSq2|SINE|Alu	-15988	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr11.5315878.+	chr11	5315878	5315879	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7298	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr19.2400831.-	chr19	2400831	2400832	-	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	-11047	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr15.26543475.-	chr15	26543475	26543476	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-182515	NR_038852	503519	Hs.371380	NR_038851	ENSG00000259150	LOC503519	-	uncharacterized LOC503519	miscRNA
chr8.141030036.+	chr8	141030036	141030037	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314737	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr16.11592157.-	chr16	11592157	11592158	-	0	NA	Intergenic	AluSx|SINE|Alu	-88072	NM_004862	9516	Hs.459940	NM_001136472	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide-induced TNF factor	protein-coding
chr7.158790547.-	chr7	158790547	158790548	-	0	NA	Intergenic	Intergenic	10498	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr11.2051358.+	chr11	2051358	2051359	+	0	NA	Intergenic	Intergenic	-32293	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr5.84507357.-	chr5	84507357	84507358	-	0	NA	Intergenic	AluSx|SINE|Alu	826746	NM_005711	10085	Hs.482730	NM_005711		EDIL3	DEL1	EGF-like repeats and discoidin I-like domains 3	protein-coding
chr5.176075330.-	chr5	176075330	176075331	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-942	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr19.57148840.-	chr19	57148840	57148841	-	0	NA	Intergenic	AluY|SINE|Alu	5687	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
chr3.173023531.-	chr3	173023531	173023532	-	0	NA	Intergenic	AluYc|SINE|Alu	92713	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr2.210525396.-	chr2	210525396	210525397	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80993	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr1.110881109.-	chr1	110881109	110881110	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-684	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr6.41519726.+	chr6	41519726	41519727	+	0	NA	"intron (NM_001012427, intron 1 of 16)"	"intron (NM_001012427, intron 1 of 16)"	5562	NM_138457	116113	Hs.131436	NM_001012426	ENSG00000137166	FOXP4	hFKHLA	forkhead box P4	protein-coding
chr9.12352805.+	chr9	12352805	12352806	+	0	NA	Intergenic	AluY|SINE|Alu	-340581	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr19.9181545.-	chr19	9181545	9181546	-	0	NA	Intergenic	AluSx1|SINE|Alu	22376	NM_001004456	125963	Hs.553577	NM_001004456	ENSG00000170929	OR1M1	OR19-5|OR19-6	"olfactory receptor, family 1, subfamily M, member 1"	protein-coding
chr1.32122160.+	chr1	32122160	32122161	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11322	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chrX.31406374.+	chrX	31406374	31406375	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120041	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr8.120878171.+	chr8	120878171	120878172	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7729	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr1.229694721.+	chr1	229694721	229694722	+	0	NA	promoter-TSS (NM_012089)	promoter-TSS (NM_012089)	-279	NM_012089	23456	Hs.17614	NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	"ATP-binding cassette, sub-family B (MDR/TAP), member 10"	protein-coding
chr13.23949444.-	chr13	23949444	23949445	-	0	NA	"intron (NM_014363, intron 2 of 9)"	CpG-6260	-58397	NM_014363	26278	Hs.159492	NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29	spastic ataxia of Charlevoix-Saguenay (sacsin)	protein-coding
chr15.20500368.+	chr15	20500368	20500369	+	0	NA	Intergenic	CpG	12371	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr20.61885855.-	chr20	61885855	61885856	-	0	NA	promoter-TSS (NM_152864)	promoter-TSS (NM_152864)	-37	NM_152864	128414	Hs.46627	NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	Na+/K+ transporting ATPase interacting 4	protein-coding
chr19.9311194.-	chr19	9311194	9311195	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14353	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr2.99438505.-	chr2	99438505	99438506	-	0	NA	"exon (NM_207362, exon 7 of 10)"	"exon (NM_207362, exon 7 of 10)"	90916	NM_012214	11320	Hs.177576	NM_001160154	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A"	protein-coding
chr7.6454036.+	chr7	6454036	6454037	+	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	33607	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr18.46969345.+	chr18	46969345	46969346	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17734	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr19.3358951.+	chr19	3358951	3358952	+	0	NA	promoter-TSS (NM_205843)	promoter-TSS (NM_205843)	-610	NM_205843	4782	Hs.170131	NM_001245002	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I/C (CCAAT-binding transcription factor)	protein-coding
chr9.37800542.-	chr9	37800542	37800543	-	0	NA	promoter-TSS (NM_024345)	promoter-TSS (NM_024345)	248	NM_024345	79269	Hs.118394	NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
chr2.70416477.-	chr2	70416477	70416478	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1674	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr5.177538231.-	chr5	177538231	177538232	-	0	NA	Intergenic	AluSp|SINE|Alu	2325	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr14.55349960.+	chr14	55349960	55349961	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-5049	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr16.15438498.-	chr16	15438498	15438499	-	0	NA	Intergenic	AluSg|SINE|Alu	-33653	NM_001277325	100288332	Hs.743246	XM_003118698	ENSG00000183793	LOC100288332	-	NPIP-like protein 1-like	protein-coding
chr10.135482220.+	chr10	135482220	135482221	+	0	NA	"intron (NM_001127386, intron 1 of 1).13"	CpG-3605	-1458	NM_033178	22947	Hs.553518	XM_003960844	ENSG00000258389	DUX4	DUX10	double homeobox 4	protein-coding
chr8.98787935.-	chr8	98787935	98787936	-	0	NA	"5' UTR (NM_018407, exon 1 of 7)"	"5' UTR (NM_018407, exon 1 of 7)"	-126	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr5.178287390.+	chr5	178287390	178287391	+	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	436	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr22.22259536.-	chr22	22259536	22259537	-	0	NA	Intergenic	AluSc5|SINE|Alu	37566	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr19.57585501.-	chr19	57585501	57585502	-	0	NA	Intergenic	Intergenic	46008	NM_020903	57663	Hs.515632	NM_020903	ENSG00000131864	USP29	HOM-TES-84/86	ubiquitin specific peptidase 29	protein-coding
chr21.11107009.-	chr21	11107009	11107010	-	0	NA	Intergenic	CpG	8072	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr8.95668727.-	chr8	95668727	95668728	-	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	-15363	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr3.43950006.+	chr3	43950006	43950007	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-205698	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1	microRNA 138-1	miscRNA
chr6.49901488.-	chr6	49901488	49901489	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-15669	NM_001166478	403339	Hs.558270	NM_001166478	ENSG00000214643	DEFB133	-	"defensin, beta 133"	protein-coding
chr14.56584611.+	chr14	56584611	56584612	+	0	NA	promoter-TSS (NM_021255)	promoter-TSS (NM_021255)	-482	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
chr4.55034892.+	chr4	55034892	55034893	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60372	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr13.111467867.-	chr13	111467867	111467868	-	0	NA	Intergenic	Intergenic	-54788	NR_027701	283487	Hs.245390	NM_178514		LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	miscRNA
chr9.11197017.-	chr9	11197017	11197018	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584294	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr3.20070865.-	chr3	20070865	20070866	-	0	NA	Intergenic	AluSx1|SINE|Alu	10659	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr7.77452583.-	chr7	77452583	77452584	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16864	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr2.115328218.-	chr2	115328218	115328219	-	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	-109038	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr17.43255899.-	chr17	43255899	43255900	-	0	NA	Intergenic	AluY|SINE|Alu	-17635	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr3.160673494.-	chr3	160673494	160673495	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149189	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr9.131099676.+	chr9	131099676	131099677	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3163	NM_005094	10999	Hs.656699	NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	"solute carrier family 27 (fatty acid transporter), member 4"	protein-coding
chr10.104238458.+	chr10	104238458	104238459	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17288	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr14.104730942.+	chr14	104730942	104730943	+	0	NA	Intergenic	Intergenic	125882	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
chr9.6790191.+	chr9	6790191	6790192	+	0	NA	"intron (NM_001146694, intron 1 of 20)"	AluYc|SINE|Alu	32550	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr9.100092090.+	chr9	100092090	100092091	+	0	NA	"intron (NR_036529, intron 27 of 44)"	AluY|SINE|Alu	22180	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
chr12.131323696.-	chr12	131323696	131323697	-	0	NA	"5' UTR (NM_001980, exon 1 of 10)"	"5' UTR (NM_001980, exon 1 of 10)"	-123	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr9.133922889.+	chr9	133922889	133922890	+	0	NA	"intron (NM_006059, intron 8 of 27)"	Charlie1b|DNA|hAT-Charlie	38385	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	"laminin, gamma 3"	protein-coding
chr13.20801698.+	chr13	20801698	20801699	+	0	NA	"intron (NM_001110220, intron 3 of 3)"	"intron (NM_001110220, intron 3 of 3)"	3674	NM_006783	10804	Hs.511757	NM_001110219	ENSG00000121742	GJB6	CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2	"gap junction protein, beta 6, 30kDa"	protein-coding
chr5.20776407.-	chr5	20776407	20776408	-	0	NA	Intergenic	AluY|SINE|Alu	683182	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr17.37768965.-	chr17	37768965	37768966	-	0	NA	Intergenic	Intergenic	4790	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr1.200956562.-	chr1	200956562	200956563	-	0	NA	"intron (NM_001252103, intron 24 of 33)"	AluJo|SINE|Alu	-36266	NM_001252103	23046	Hs.169182	NM_001252100	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
chr5.57859479.-	chr5	57859479	57859480	-	0	NA	Intergenic	SVA_A|Other|Other	19460	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr22.30753763.+	chr22	30753763	30753764	+	0	NA	promoter-TSS (NM_001005409)	promoter-TSS (NM_001005409)	-850	NM_005877	10291	Hs.505597	NM_001005409	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	"splicing factor 3a, subunit 1, 120kDa"	protein-coding
chr22.24237306.+	chr22	24237306	24237307	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	741	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr3.185541173.+	chr3	185541173	185541174	+	0	NA	"intron (NM_006548, intron 1 of 15)"	CpG	1654	NM_006548	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr10.13341802.+	chr10	13341802	13341803	+	0	NA	promoter-TSS (NM_001037537)	promoter-TSS (NM_001037537)	-56	NM_001037537	5264	Hs.498732	NM_001037537	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
chr1.109995483.+	chr1	109995483	109995484	+	0	NA	Intergenic	AluY|SINE|Alu	-13617	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr9.26341254.-	chr9	26341254	26341255	-	0	NA	Intergenic	AluSq2|SINE|Alu	-274581	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr11.66512931.-	chr11	66512931	66512932	-	0	NA	"intron (NR_048553, intron 1 of 14)"	"intron (NR_048553, intron 1 of 14)"	-724	NM_024650	79703	Hs.292088	NM_024650	ENSG00000173715	C11orf80	-	chromosome 11 open reading frame 80	protein-coding
chr7.95234854.+	chr7	95234854	95234855	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8929	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr11.64481308.+	chr11	64481308	64481309	+	0	NA	"5' UTR (NM_015080, exon 2 of 23)"	"5' UTR (NM_015080, exon 2 of 23)"	9352	NM_138732	9379	Hs.372938	NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
chr9.77401512.+	chr9	77401512	77401513	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100751	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr14.31429810.+	chr14	31429810	31429811	+	0	NA	"intron (NM_001083893, intron 1 of 17)"	AluY|SINE|Alu	54138	NR_030354	693209		NR_030354		MIR624	MIRN624|hsa-mir-624	microRNA 624	miscRNA
chr10.101292657.+	chr10	101292657	101292658	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-33	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr16.77246824.-	chr16	77246824	77246825	-	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	-13475	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr3.36494705.+	chr3	36494705	36494706	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72608	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr6.2221775.+	chr6	2221775	2221776	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24093	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr3.16925913.+	chr3	16925913	16925914	+	0	NA	promoter-TSS (NM_001144382)	promoter-TSS (NM_001144382)	-539	NM_001144382	23228	Hs.741267	NM_001144382	ENSG00000154822	PLCL2	PLCE2	phospholipase C-like 2	protein-coding
chr19.5148580.+	chr19	5148580	5148581	+	0	NA	"intron (NM_015015, intron 21 of 22)"	"intron (NM_015015, intron 21 of 22)"	179456	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr6.149638374.+	chr6	149638374	149638375	+	0	NA	Intergenic	CpG	-1062	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr8.1390755.+	chr8	1390755	1390756	+	0	NA	Intergenic	Intergenic	-58777	NM_001277161	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr5.17207811.+	chr5	17207811	17207812	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9121	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr7.45750450.-	chr7	45750450	45750451	-	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	-58167	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr4.48016954.-	chr4	48016954	48016955	-	0	NA	Intergenic	AluY|SINE|Alu	1837	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr4.38809142.+	chr4	38809142	38809143	+	0	NA	Intergenic	SVA_D|Other|Other	-2730	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr1.231060357.-	chr1	231060357	231060358	-	0	NA	"intron (NM_024525, intron 14 of 22)"	AluY|SINE|Alu	-54261	NM_001122835	79573	Hs.424788	NM_001122835	ENSG00000143643	TTC13	-	tetratricopeptide repeat domain 13	protein-coding
chr22.24621452.+	chr22	24621452	24621453	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19658	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr11.113665991.+	chr11	113665991	113665992	+	0	NA	Intergenic	AluSx|SINE|Alu	15473	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr19.15719723.-	chr19	15719723	15719724	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6306	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr2.32738975.-	chr2	32738975	32738976	-	0	NA	"intron (NM_016252, intron 54 of 73)"	AluSg|SINE|Alu	18245	NR_030285	693143		NR_030285		MIR558	MIRN558|hsa-mir-558	microRNA 558	miscRNA
chr19.461080.+	chr19	461080	461081	+	0	NA	promoter-TSS (NM_012435)	promoter-TSS (NM_012435)	-84	NM_012435	25759	Hs.30965	NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC (Src homology 2 domain containing) transforming protein 2	protein-coding
chr7.48129239.+	chr7	48129239	48129240	+	0	NA	"intron (NM_003364, intron 1 of 8)"	CpG	493	NM_003364	7378	Hs.488240	NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
chr19.7123239.-	chr19	7123239	7123240	-	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	-53768	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr16.58288610.+	chr16	58288610	58288611	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4770	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr4.44679289.-	chr4	44679289	44679290	-	0	NA	Intergenic	AluSg|SINE|Alu	1144	NM_021927	60558	Hs.546419	NM_021927	ENSG00000151806	GUF1	EF-4	GUF1 GTPase homolog (S. cerevisiae)	protein-coding
chr11.45249156.+	chr11	45249156	45249157	+	0	NA	"exon (NM_001256695, exon 8 of 8)"	"exon (NM_001256695, exon 8 of 8)"	58728	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
chrX.39868191.+	chrX	39868191	39868192	+	0	NA	Intergenic	CpG	88528	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr1.6094751.+	chr1	6094751	6094752	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	403	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr14.83280575.+	chr14	83280575	83280576	+	0	NA	Intergenic	SVA_D|Other|Other	-1280370	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr16.49892629.+	chr16	49892629	49892630	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-799	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr12.66188500.+	chr12	66188500	66188501	+	0	NA	"intron (NR_026825, intron 1 of 1)"	AluYf4|SINE|Alu	-29740	NM_003484	8091	Hs.505924	NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|STQTL9	high mobility group AT-hook 2	protein-coding
chr1.6471035.-	chr1	6471035	6471036	-	0	NA	Intergenic	Intergenic	-8944	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr8.144267554.-	chr8	144267554	144267555	-	0	NA	Intergenic	CpG	25501	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr12.112051664.+	chr12	112051664	112051665	+	0	NA	Intergenic	AluY|SINE|Alu	-14184	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chrM.9301.-	chrM	9301	9302	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.126260567.+	chr3	126260567	126260568	+	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	17191	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr22.34378915.-	chr22	34378915	34378916	-	0	NA	Intergenic	AluSx1|SINE|Alu	62499	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr3.70022646.+	chr3	70022646	70022647	+	0	NA	Intergenic	AluSz|SINE|Alu	36895	NM_198178	4286	Hs.618266	NM_000248	ENSG00000187098	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
chr2.239047360.-	chr2	239047360	239047361	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	3	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr15.41613159.-	chr15	41613159	41613160	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11660	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr14.100772219.+	chr14	100772219	100772220	+	0	NA	"intron (NM_001039355, intron 1 of 3)"	CpG	641	NM_001039355	123096	Hs.578109	NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	"solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29"	protein-coding
chr10.20638027.-	chr10	20638027	20638028	-	0	NA	Intergenic	Intergenic	202872	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr17.42357406.+	chr17	42357406	42357407	+	0	NA	Intergenic	Intergenic	-11904	NM_000342	6521	Hs.443948	NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|DI|EMPB3|EPB3|FR|RTA1A|SW|WD|WD1|WR	"solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)"	protein-coding
chr11.1946055.-	chr11	1946055	1946056	-	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	-5256	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr14.51521306.-	chr14	51521306	51521307	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41116	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr19.18180415.-	chr19	18180415	18180416	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17282	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr17.46187008.+	chr17	46187008	46187009	+	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	2061	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr22.31420914.+	chr22	31420914	31420915	+	0	NA	Intergenic	AluSx|SINE|Alu	55280	NR_002323	55000	Hs.554829	NR_002323		TUG1	LINC00080|NCRNA00080|TI-227H	taurine upregulated 1 (non-protein coding)	miscRNA
chr6.170480705.-	chr6	170480705	170480706	-	0	NA	Intergenic	Intergenic	-90952	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr17.27717863.+	chr17	27717863	27717864	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-80	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr8.38758822.-	chr8	38758822	38758823	-	0	NA	promoter-TSS (NM_021623)	promoter-TSS (NM_021623)	-69	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	"pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2"	protein-coding
chr16.49498958.-	chr16	49498958	49498959	-	0	NA	Intergenic	CpG	-91150	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr22.21238371.-	chr22	21238371	21238372	-	0	NA	"intron (NM_004782, intron 4 of 4)"	AluSq2|SINE|Alu	-25079	NM_004782	9342	Hs.108002	NM_004782	ENSG00000099940	SNAP29	CEDNIK|SNAP-29	"synaptosomal-associated protein, 29kDa"	protein-coding
chr15.32298422.-	chr15	32298422	32298423	-	0	NA	Intergenic	AluY|SINE|Alu	24264	NM_000746	1139	Hs.713151	XM_003960575		CHRNA7	CHRNA7-2|NACHRA7	"cholinergic receptor, nicotinic, alpha 7 (neuronal)"	protein-coding
chr7.36192847.-	chr7	36192847	36192848	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	-11	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr11.41260727.-	chr11	41260727	41260728	-	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	-220459	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr9.135947021.-	chr9	135947021	135947022	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9656	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr4.6746767.+	chr4	6746767	6746768	+	0	NA	Intergenic	AluY|SINE|Alu	28925	NM_018366	55330	Hs.7570	NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|CNO	"biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino"	protein-coding
chr19.11060467.-	chr19	11060467	11060468	-	0	NA	Intergenic	AluY|SINE|Alu	11131	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr10.135075432.-	chr10	135075432	135075433	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14308	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr2.109985559.-	chr2	109985559	109985560	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55478	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr9.133430113.+	chr9	133430113	133430114	+	0	NA	Intergenic	Intergenic	24768	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr17.26550589.+	chr17	26550589	26550590	+	0	NA	Intergenic	SVA_F|Other|Other	-3000	NR_003064	23615	Hs.157195	NR_003064	ENSG00000237575	PYY2	-	"peptide YY, 2 (pseudogene)"	pseudo
chr19.18057775.+	chr19	18057775	18057776	+	0	NA	Intergenic	AluSx|SINE|Alu	-4336	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr2.48010448.-	chr2	48010448	48010449	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-227	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr2.168780238.-	chr2	168780238	168780239	-	0	NA	Intergenic	AluY|SINE|Alu	-105056	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	"UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1"	protein-coding
chr21.45566085.-	chr21	45566085	45566086	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12591	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr12.32064881.+	chr12	32064881	32064882	+	0	NA	Intergenic	AluY|SINE|Alu	-47472	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr3.48117726.-	chr3	48117726	48117727	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-13043	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr5.1770141.+	chr5	1770141	1770142	+	0	NA	Intergenic	L1MB5|LINE|L1	29815	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr4.26862262.+	chr4	26862262	26862263	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-51	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr22.34378921.-	chr22	34378921	34378922	-	0	NA	Intergenic	AluSx1|SINE|Alu	62505	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr7.1587816.-	chr7	1587816	1587817	-	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	-8250	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr2.170684193.+	chr2	170684193	170684194	+	0	NA	"exon (NM_172070, exon 1 of 39)"	"exon (NM_172070, exon 1 of 39)"	175	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr16.56171956.-	chr16	56171956	56171957	-	0	NA	"intron (NR_027078, intron 2 of 4)"	AluJb|SINE|Alu	-53050	NR_027078	283856	Hs.707433	NR_027078	ENSG00000246379	LOC283856	-	uncharacterized LOC283856	miscRNA
chr14.88199417.-	chr14	88199417	88199418	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260198	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr9.86733854.+	chr9	86733854	86733855	+	0	NA	Intergenic	AluSx|SINE|Alu	138217	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr12.7858617.+	chr12	7858617	7858618	+	0	NA	Intergenic	CpG	-5472	NM_199286	359787	Hs.131358	NM_199286	ENSG00000187569	DPPA3	STELLA	developmental pluripotency associated 3	protein-coding
chr18.19632285.+	chr18	19632285	19632286	+	0	NA	Intergenic	AluSg4|SINE|Alu	-117119	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr19.14156319.+	chr19	14156319	14156320	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13652	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr1.161393140.+	chr1	161393140	161393141	+	0	NA	Intergenic	SVA_D|Other|Other	-55467	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chr9.130867494.-	chr9	130867494	130867495	-	0	NA	"intron (NM_001265614, intron 6 of 10)"	AluSx1|SINE|Alu	-6733	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr11.1122315.+	chr11	1122315	1122316	+	0	NA	Intergenic	Intergenic	47440	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr20.33283477.-	chr20	33283477	33283478	-	0	NA	Intergenic	AluY|SINE|Alu	8671	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr8.41166066.+	chr8	41166066	41166067	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	924	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr5.172640596.-	chr5	172640596	172640597	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-21719	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr2.96149441.-	chr2	96149441	96149442	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1038	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr2.61306990.-	chr2	61306990	61306991	-	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	-13627	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr16.3203719.+	chr16	3203719	3203720	+	0	NA	Intergenic	AluSg|SINE|Alu	18585	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chrX.40029672.+	chrX	40029672	40029673	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	6910	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr12.106606584.+	chr12	106606584	106606585	+	0	NA	Intergenic	L1PA7|LINE|L1	35129	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr3.164119667.-	chr3	164119667	164119668	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676616	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr2.191878852.+	chr2	191878852	191878853	+	0	NA	"5' UTR (NM_007315, exon 1 of 25)"	"5' UTR (NM_007315, exon 1 of 25)"	124	NM_007315	6772	Hs.743244	NM_007315	ENSG00000115415	STAT1	CANDF7|ISGF-3|STAT91	"signal transducer and activator of transcription 1, 91kDa"	protein-coding
chrX.18849798.+	chrX	18849798	18849799	+	0	NA	Intergenic	AluY|SINE|Alu	-58616	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr17.26336748.-	chr17	26336748	26336749	-	0	NA	Intergenic	AluSz|SINE|Alu	32940	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr7.158497988.+	chr7	158497988	158497989	+	0	NA	promoter-TSS (NM_017760)	promoter-TSS (NM_017760)	-468	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr13.111268298.+	chr13	111268298	111268299	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	367	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr2.121244113.+	chr2	121244113	121244114	+	0	NA	Intergenic	Intergenic	-20188	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr9.26341259.-	chr9	26341259	26341260	-	0	NA	Intergenic	AluSq2|SINE|Alu	-274586	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr11.915981.-	chr11	915981	915982	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	923	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chrX.19862920.+	chrX	19862920	19862921	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42824	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr21.44478132.+	chr21	44478132	44478133	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17908	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chrX.9443102.+	chrX	9443102	9443103	+	0	NA	"intron (NM_005647, intron 1 of 17)"	AluSx1|SINE|Alu	9901	NM_005647	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr10.28821886.+	chr10	28821886	28821887	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	464	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr17.11800353.-	chr17	11800353	11800354	-	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	-14134	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr2.25667157.-	chr2	25667157	25667158	-	0	NA	"intron (NM_001256303, intron 12 of 19)"	AluSx1|SINE|Alu	101698	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr10.35223729.-	chr10	35223729	35223730	-	0	NA	Intergenic	AluSx4|SINE|Alu	119476	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr13.113951535.-	chr13	113951535	113951536	-	0	NA	promoter-TSS (NM_005561)	promoter-TSS (NM_005561)	-66	NM_005561	3916	Hs.494419	NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal-associated membrane protein 1	protein-coding
chr6.2221745.-	chr6	2221745	2221746	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24123	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr9.19088604.+	chr9	19088604	19088605	+	0	NA	"intron (NM_001270890, intron 5 of 16)"	AluSx1|SINE|Alu	14336	NM_017645	54801	Hs.533468	NM_001270890	ENSG00000147874	HAUS6	Dgt6|FAM29A	"HAUS augmin-like complex, subunit 6"	protein-coding
chr22.21022180.-	chr22	21022180	21022181	-	0	NA	Intergenic	CpG	21663	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr2.44294200.-	chr2	44294200	44294201	-	0	NA	Intergenic	SVA_D|Other|Other	71056	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr11.68671231.+	chr11	68671231	68671232	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	72	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr9.138663344.+	chr9	138663344	138663345	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69313	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr9.135947039.+	chr9	135947039	135947040	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9674	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr1.200904669.-	chr1	200904669	200904670	-	0	NA	Intergenic	AluSx|SINE|Alu	-40720	NM_001142569	55765	Hs.518997	NM_001142569	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
chr9.130734377.-	chr9	130734377	130734378	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8435	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr6.170055424.-	chr6	170055424	170055425	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46735	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr19.11043351.+	chr19	11043351	11043352	+	0	NA	Intergenic	AluSg4|SINE|Alu	3927	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr12.57177833.-	chr12	57177833	57177834	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20725	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr15.29862591.-	chr15	29862591	29862592	-	0	NA	"intron (NM_015307, intron 1 of 10)"	CpG	-336	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	"family with sequence similarity 189, member A1"	protein-coding
chr20.32873735.+	chr20	32873735	32873736	+	0	NA	"intron (NM_000687, intron 8 of 9)"	AluY|SINE|Alu	17480	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr5.179581182.-	chr5	179581182	179581183	-	0	NA	"intron (NM_175062, intron 1 of 13)"	"intron (NM_175062, intron 1 of 13)"	-54948	NM_175062	255426	Hs.190559	NM_001031799	ENSG00000146090	RASGEF1C	-	"RasGEF domain family, member 1C"	protein-coding
chr2.134028789.+	chr2	134028789	134028790	+	0	NA	"intron (NM_207363, intron 4 of 19)"	AluY|SINE|Alu	297242	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
chr15.100514142.+	chr15	100514142	100514143	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-167010	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr3.52279919.+	chr3	52279919	52279920	+	0	NA	promoter-TSS (NM_001122870)	promoter-TSS (NM_001122870)	110	NM_144641	132160	Hs.731914	NM_001122870	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	"protein phosphatase, Mg2+/Mn2+ dependent, 1M"	protein-coding
chr14.76127578.-	chr14	76127578	76127579	-	0	NA	promoter-TSS (NM_015072)	promoter-TSS (NM_015072)	-27	NM_015072	23093	Hs.709609	NM_015072	ENSG00000119685	TTLL5	KIAA0998|STAMP	"tubulin tyrosine ligase-like family, member 5"	protein-coding
chr6.141000387.-	chr6	141000387	141000388	-	0	NA	Intergenic	AluY|SINE|Alu	4564	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr6.139132975.+	chr6	139132975	139132976	+	0	NA	"intron (NM_001195037, intron 1 of 20)"	AluSz|SINE|Alu	15727	NM_001195037	345930	Hs.660603	NM_001077706	ENSG00000203734	ECT2L	ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5	epithelial cell transforming sequence 2 oncogene-like	protein-coding
chr20.19987664.+	chr20	19987664	19987665	+	0	NA	Intergenic	AluY|SINE|Alu	-10270	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr5.3764366.+	chr5	3764366	3764367	+	0	NA	Intergenic	Intergenic	168198	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr1.210406250.+	chr1	210406250	210406251	+	0	NA	promoter-TSS (NM_019605)	promoter-TSS (NM_019605)	55	NM_019605	56256	Hs.600545	NM_019605		SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
chr5.178657986.+	chr5	178657986	178657987	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114445	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr6.138984659.+	chr6	138984659	138984660	+	0	NA	Intergenic	AluSp|SINE|Alu	-28146	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr1.113336829.-	chr1	113336829	113336830	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73640	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr7.76022448.+	chr7	76022448	76022449	+	0	NA	"intron (NM_080744, intron 9 of 10)"	CpG	-4393	NM_007155	7784	Hs.656137	NM_001110354	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3 (sperm receptor)	protein-coding
chr2.91874373.+	chr2	91874373	91874374	+	0	NA	Intergenic	CpG	-26398	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr18.38415792.-	chr18	38415792	38415793	-	0	NA	Intergenic	AluY|SINE|Alu	-684769	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr20.62512934.-	chr20	62512934	62512935	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13521	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr3.49314812.-	chr3	49314812	49314813	-	0	NA	promoter-TSS (NM_198562)	promoter-TSS (NM_198562)	304	NM_198562	375341	Hs.403828	NM_198562		C3orf62	-	chromosome 3 open reading frame 62	protein-coding
chr2.239047343.-	chr2	239047343	239047344	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	20	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr5.43121579.+	chr5	43121579	43121580	+	0	NA	promoter-TSS (NM_003432)	promoter-TSS (NM_003432)	-63	NM_003432	7690	Hs.535804	NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
chr10.35336417.+	chr10	35336417	35336418	+	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	26841	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chrX.68786567.+	chrX	68786567	68786568	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49344	NM_001005610	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr17.77752267.-	chr17	77752267	77752268	-	0	NA	"intron (NM_032647, intron 2 of 3)"	CpG-11229	-290	NM_032647	84733	Hs.368410	NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox homolog 2	protein-coding
chr17.6338838.-	chr17	6338838	6338839	-	0	NA	promoter-TSS (NM_014336)	promoter-TSS (NM_014336)	319	NM_001033054	23746	Hs.279887	NM_001033054	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein-like 1	protein-coding
chr9.28773098.+	chr9	28773098	28773099	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53795	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr8.98771868.+	chr8	98771868	98771869	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15941	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chrX.137770402.-	chrX	137770402	137770403	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20448	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr7.5396347.+	chr7	5396347	5396348	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66830	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr7.53103656.-	chr7	53103656	53103657	-	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	-307	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr5.37382760.+	chr5	37382760	37382761	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3348	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr1.240947767.+	chr1	240947767	240947768	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172305	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chrX.53111564.-	chrX	53111564	53111565	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-22	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.1513293.+	chr19	1513293	1513294	+	0	NA	promoter-TSS (NM_213604)	promoter-TSS (NM_213604)	-105	NM_213604	339366	Hs.371674	NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS-like 5	protein-coding
chr12.75694212.+	chr12	75694212	75694213	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29624	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr2.38191064.-	chr2	38191064	38191065	-	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	-13468	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr1.27022361.+	chr1	27022361	27022362	+	0	NA	promoter-TSS (NM_139135)	promoter-TSS (NM_139135)	-161	NM_006015	8289	Hs.468972	NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT rich interactive domain 1A (SWI-like)	protein-coding
chr19.18180371.-	chr19	18180371	18180372	-	0	NA	"exon (NM_005535, exon 10 of 17)"	"exon (NM_005535, exon 10 of 17)"	-17326	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chrX.113575468.+	chrX	113575468	113575469	+	0	NA	Intergenic	AluJb|SINE|Alu	-243083	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr15.31566498.-	chr15	31566498	31566499	-	0	NA	Intergenic	AluY|SINE|Alu	43448	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chr3.128194223.-	chr3	128194223	128194224	-	0	NA	Intergenic	Intergenic	8132	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr15.60335283.-	chr15	60335283	60335284	-	0	NA	Intergenic	AluY|SINE|Alu	-38862	NM_012182	27023	Hs.734475	NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
chr11.6429109.+	chr11	6429109	6429110	+	0	NA	"intron (NM_001257324, intron 1 of 7)"	AluYb8|SINE|Alu	-2218	NM_001257320	322	Hs.372840	NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	protein-coding
chr1.242294523.+	chr1	242294523	242294524	+	0	NA	"intron (NM_152666, intron 6 of 10)"	AluSc|SINE|Alu	-132138	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr7.150093826.-	chr7	150093826	150093827	-	0	NA	"exon (NM_173680, exon 3 of 3)"	"exon (NM_173680, exon 3 of 3)"	9014	NR_027237	728743	Hs.650365	NR_027237		LOC728743	-	zinc finger protein pseudogene	pseudo
chr6.143227028.-	chr6	143227028	143227029	-	0	NA	"intron (NM_006734, intron 1 of 9)"	AluSz6|SINE|Alu	-39310	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chr3.28951356.-	chr3	28951356	28951357	-	0	NA	Intergenic	AluY|SINE|Alu	-334587	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr10.11653123.+	chr10	11653123	11653124	+	0	NA	"intron (NM_014688, intron 1 of 14)"	CpG	556	NM_014688	9712	Hs.498661	NM_001080491	ENSG00000148429	USP6NL	RNTRE|TRE2NL	USP6 N-terminal like	protein-coding
chr14.65639782.-	chr14	65639782	65639783	-	0	NA	Intergenic	AluY|SINE|Alu	70369	NR_073137	4149	Hs.285354	NM_001271068	ENSG00000125952	MAX	bHLHd4	MYC associated factor X	protein-coding
chr7.157582084.+	chr7	157582084	157582085	+	0	NA	"intron (NM_130842, intron 11 of 21)"	"intron (NM_130842, intron 11 of 21)"	-65193	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr1.93570000.-	chr1	93570000	93570001	-	0	NA	"intron (NM_001164393, intron 1 of 12)"	AluSc|SINE|Alu	-25208	NM_001164392	22823	Hs.712767	NM_001164391	ENSG00000143033	MTF2	M96|PCL2|RP5-976O13.1|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
chrX.29584336.-	chrX	29584336	29584337	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649339	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr6.71104378.+	chr6	71104378	71104379	+	0	NA	Intergenic	MER48|LTR|ERV1	-18729	NM_020819	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr14.105941400.+	chr14	105941400	105941401	+	0	NA	promoter-TSS (NR_073084)	promoter-TSS (NR_073084)	288	NR_073083	1397	Hs.534309	NM_001270837	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine-rich protein 2	protein-coding
chr2.201896775.-	chr2	201896775	201896776	-	0	NA	"intron (NM_173822, intron 2 of 11)"	AluSz|SINE|Alu	-39617	NM_173822	285172	Hs.24701	NM_173822		FAM126B	HYCC2	"family with sequence similarity 126, member B"	protein-coding
chr21.47343984.-	chr21	47343984	47343985	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57679	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr1.24829828.+	chr1	24829828	24829829	+	0	NA	promoter-TSS (NR_045407)	promoter-TSS (NR_045407)	441	NM_001251981	11123	Hs.737226	NM_001251977	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
chr2.170687948.+	chr2	170687948	170687949	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3930	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr6.141000305.-	chr6	141000305	141000306	-	0	NA	Intergenic	AluSx1|SINE|Alu	4646	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr8.7877761.-	chr8	7877761	7877762	-	0	NA	Intergenic	Intergenic	22718	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr19.14551303.+	chr19	14551303	14551304	+	0	NA	"intron (NM_213560, intron 1 of 21)"	"intron (NM_213560, intron 1 of 21)"	217	NM_213560	5585	Hs.466044	NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
chr19.813886.+	chr19	813886	813887	+	0	NA	TTS (NR_036154)	TTS (NR_036154)	302	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	-	microRNA 3187	miscRNA
chr2.47661288.+	chr2	47661288	47661289	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	31082	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr4.184320028.+	chr4	184320028	184320029	+	0	NA	Intergenic	CpG	-45761	NM_017632	55602	Hs.644077	NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
chr1.228270428.+	chr1	228270428	228270429	+	0	NA	promoter-TSS (NM_001658)	promoter-TSS (NM_001658)	67	NM_001024226	375	Hs.286221	NM_001024226	ENSG00000143761	ARF1	-	ADP-ribosylation factor 1	protein-coding
chr17.1389895.+	chr17	1389895	1389896	+	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	-844	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chrX.153414500.-	chrX	153414500	153414501	-	0	NA	"intron (NM_020061, intron 1 of 5)"	AluY|SINE|Alu	-4775	NM_020061	5956	Hs.592247	NM_020061	ENSG00000102076	OPN1LW	CBBM|CBP|COD5|RCP|ROP	"opsin 1 (cone pigments), long-wave-sensitive"	protein-coding
chr7.5360808.-	chr7	5360808	5360809	-	0	NA	"exon (NM_001080495, exon 22 of 30)"	"exon (NM_001080495, exon 22 of 30)"	-38247	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr18.77659560.-	chr18	77659560	77659561	-	0	NA	"exon (NM_012283, exon 2 of 2)"	"exon (NM_012283, exon 2 of 2)"	-35892	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr15.41613109.-	chr15	41613109	41613110	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11710	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr12.104506927.-	chr12	104506927	104506928	-	0	NA	Intergenic	AluY|SINE|Alu	-25113	NM_006166	4801	Hs.84928	NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	"nuclear transcription factor Y, beta"	protein-coding
chr2.86948224.-	chr2	86948224	86948225	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	-21	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr10.43563196.+	chr10	43563196	43563197	+	0	NA	Intergenic	Intergenic	-9321	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr17.31003970.+	chr17	31003970	31003971	+	0	NA	"intron (NM_015194, intron 16 of 21)"	AluY|SINE|Alu	189865	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	"cyclin-dependent kinase 5, regulatory subunit 1 (p35)"	protein-coding
chr1.113576636.+	chr1	113576636	113576637	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39195	NM_014813	9860	Hs.729143	NM_014813	ENSG00000198799	LRIG2	LIG-2|LIG2|UFS2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding
chr18.67270869.-	chr18	67270869	67270870	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202585	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr3.16159885.+	chr3	16159885	16159886	+	0	NA	Intergenic	AluSx|SINE|Alu	-56299	NM_054110	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNT13|GALNT7|GALNTL2|PIH5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chr9.99114716.+	chr9	99114716	99114717	+	0	NA	"intron (NM_007001, intron 4 of 11)"	AluSx|SINE|Alu	31276	NM_007001	11046	Hs.731624	NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	"solute carrier family 35, member D2"	protein-coding
chr13.31307200.-	chr13	31307200	31307201	-	0	NA	"intron (NM_001204406, intron 1 of 5)"	AluY|SINE|Alu	2445	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
chr11.2213970.+	chr11	2213970	2213971	+	0	NA	Intergenic	Intergenic	19677	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr22.46565268.-	chr22	46565268	46565269	-	0	NA	"intron (NM_001001928, intron 2 of 7)"	AluY|SINE|Alu	-18769	NM_001001928	5465	Hs.710044	NM_001001928	ENSG00000186951	PPARA	NR1C1|PPAR|PPARalpha|hPPAR	peroxisome proliferator-activated receptor alpha	protein-coding
chrX.53111624.-	chrX	53111624	53111625	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-82	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.30810964.-	chr16	30810964	30810965	-	0	NA	Intergenic	AluSx|SINE|Alu	12441	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr7.157794447.-	chr7	157794447	157794448	-	0	NA	"intron (NM_130842, intron 10 of 21)"	"intron (NM_130842, intron 10 of 21)"	-147170	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr13.24099400.-	chr13	24099400	24099401	-	0	NA	Intergenic	Intergenic	45109	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr17.45078482.+	chr17	45078482	45078483	+	0	NA	Intergenic	AluSg4|SINE|Alu	-21868	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr8.141296408.+	chr8	141296408	141296409	+	0	NA	"intron (NM_031466, intron 13 of 22)"	"intron (NM_031466, intron 13 of 22)"	171453	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr6.4780658.+	chr6	4780658	4780659	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3978	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr2.240980386.+	chr2	240980386	240980387	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2013	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr6.168352124.+	chr6	168352124	168352125	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25495	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr9.135947010.+	chr9	135947010	135947011	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9645	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr2.237370988.-	chr2	237370988	237370989	-	0	NA	"intron (NR_073043, intron 6 of 19)"	"intron (NR_073043, intron 6 of 19)"	-41352	NM_001270585	79781	Hs.711488	NM_001270584	ENSG00000132321	IQCA1	4930465P12Rik|IQCA	IQ motif containing with AAA domain 1	protein-coding
chr15.42300387.-	chr15	42300387	42300388	-	0	NA	"intron (NM_001206670, intron 2 of 19)"	"intron (NM_001206670, intron 2 of 19)"	35632	NM_139265	30844	Hs.143703	NM_139265	ENSG00000103966	EHD4	PAST4	EH-domain containing 4	protein-coding
chr9.137588867.+	chr9	137588867	137588868	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55215	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr8.26532456.+	chr8	26532456	26532457	+	0	NA	Intergenic	AluSp|SINE|Alu	96535	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr7.5257619.+	chr7	5257619	5257620	+	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	3719	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr8.55038066.+	chr8	55038066	55038067	+	0	NA	Intergenic	SVA_F|Other|Other	-9715	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
chr12.58090434.-	chr12	58090434	58090435	-	0	NA	"intron (NM_001261420, intron 5 of 13)"	AluSx1|SINE|Alu	-2696	NM_001261421	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr5.128197050.+	chr5	128197050	128197051	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104160	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr1.178513383.+	chr1	178513383	178513384	+	0	NA	"intron (NR_033186, intron 1 of 2)"	AluSg|SINE|Alu	1452	NR_033186	400798	Hs.668085	NM_207467	ENSG00000184909	C1orf220	-	chromosome 1 open reading frame 220	miscRNA
chr19.49964870.+	chr19	49964870	49964871	+	0	NA	"intron (NM_001145396, intron 5 of 15)"	"intron (NM_001145396, intron 5 of 15)"	8397	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr10.59080657.-	chr10	59080657	59080658	-	0	NA	Intergenic	Intergenic	16338	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr8.14882343.-	chr8	14882343	14882344	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171324	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr17.34053856.-	chr17	34053856	34053857	-	0	NA	TTS (NM_001282)	TTS (NM_001282)	4823	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr9.138959066.+	chr9	138959066	138959067	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28065	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr14.102109498.-	chr14	102109498	102109499	-	0	NA	Intergenic	AluY|SINE|Alu	-81810	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr1.36611561.-	chr1	36611561	36611562	-	0	NA	"intron (NM_001270895, intron 1 of 4)"	AluY|SINE|Alu	-3554	NR_073098	27095	Hs.523131	NM_001270894	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
chr17.3792509.-	chr17	3792509	3792510	-	0	NA	"intron (NM_172207, intron 1 of 15)"	"intron (NM_172207, intron 1 of 15)"	-1528	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr19.7123269.-	chr19	7123269	7123270	-	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	-53798	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr22.41821406.-	chr22	41821406	41821407	-	0	NA	Intergenic	AluSx1|SINE|Alu	-21621	NM_016272	10766	Hs.743993	NM_016272	ENSG00000183864	TOB2	TOB4|TOBL|TROB2	"transducer of ERBB2, 2"	protein-coding
chr2.1896172.+	chr2	1896172	1896173	+	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	-147881	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr14.80915480.-	chr14	80915480	80915481	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218083	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr1.103747519.-	chr1	103747519	103747520	-	0	NA	Intergenic	AluYa5|SINE|Alu	173467	NM_001854	1301	Hs.523446	NM_001190709	ENSG00000060718	COL11A1	CO11A1|COLL6|STL2	"collagen, type XI, alpha 1"	protein-coding
chr20.62108088.+	chr20	62108088	62108089	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4095	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr2.14112575.-	chr2	14112575	14112576	-	0	NA	Intergenic	AluY|SINE|Alu	660235	NM_145175	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	"family with sequence similarity 84, member A"	protein-coding
chr7.56109601.-	chr7	56109601	56109602	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9667	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr11.77200907.+	chr11	77200907	77200908	+	0	NA	Intergenic	SVA_D|Other|Other	-15799	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr7.99630218.-	chr7	99630218	99630219	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	-16999	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr1.33204468.+	chr1	33204468	33204469	+	0	NA	Intergenic	AluSq|SINE|Alu	-3044	NM_020888	57648	Hs.591502	NM_001198972	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding
chrX.40029601.-	chrX	40029601	40029602	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6981	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr17.4926564.-	chr17	4926564	4926565	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12163	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chrX.153657076.-	chrX	153657076	153657077	-	0	NA	promoter-TSS (NM_001183)	promoter-TSS (NM_001183)	-98	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr16.29077758.-	chr16	29077758	29077759	-	0	NA	Intergenic	AluSx|SINE|Alu	8405	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
chr3.195498031.-	chr3	195498031	195498032	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40813	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr2.87655671.+	chr2	87655671	87655672	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-99303	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr18.59919513.-	chr18	59919513	59919514	-	0	NA	"intron (NM_020854, intron 11 of 28)"	AluSc|SINE|Alu	-64989	NM_020854	57614	Hs.465323	NM_020854	ENSG00000134444	KIAA1468	HsT3308|HsT885	KIAA1468	protein-coding
chr5.486491.+	chr5	486491	486492	+	0	NA	"intron (NM_004174, intron 3 of 16)"	"intron (NM_004174, intron 3 of 16)"	-13411	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	miscRNA
chr6.141000376.-	chr6	141000376	141000377	-	0	NA	Intergenic	AluY|SINE|Alu	4575	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr5.1770155.-	chr5	1770155	1770156	-	0	NA	Intergenic	L1MB5|LINE|L1	-29801	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr9.11197035.+	chr9	11197035	11197036	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584312	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr4.103422431.-	chr4	103422431	103422432	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	55	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr7.532561.-	chr7	532561	532562	-	0	NA	Intergenic	Intergenic	-26920	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr19.12151155.-	chr19	12151155	12151156	-	0	NA	Intergenic	AluY|SINE|Alu	4630	NM_001080411	163059	Hs.667776	NM_001080411	ENSG00000197647	ZNF433	-	zinc finger protein 433	protein-coding
chr7.61969339.-	chr7	61969339	61969340	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-795095	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr2.20866108.+	chr2	20866108	20866109	+	0	NA	promoter-TSS (NM_182828)	promoter-TSS (NM_182828)	-316	NM_182828	151449	Hs.447688	NM_182828		GDF7	BMP12	growth differentiation factor 7	protein-coding
chr8.11312302.-	chr8	11312302	11312303	-	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	-11974	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr1.161508251.+	chr1	161508251	161508252	+	0	NA	Intergenic	AluYf4|SINE|Alu	11567	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr16.8974165.-	chr16	8974165	8974166	-	0	NA	Intergenic	Intergenic	11302	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr1.169305309.+	chr1	169305309	169305310	+	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	31877	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr5.524404.-	chr5	524404	524405	-	0	NA	"exon (NM_004174, exon 1 of 17)"	"exon (NM_004174, exon 1 of 17)"	-145	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr7.100044640.+	chr7	100044640	100044641	+	0	NA	Intergenic	AluY|SINE|Alu	-10546	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr19.13606269.-	chr19	13606269	13606270	-	0	NA	"intron (NM_023035, intron 1 of 46)"	AluY|SINE|Alu	-11005	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr2.122878804.+	chr2	122878804	122878805	+	0	NA	Intergenic	AluY|SINE|Alu	365683	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr1.159825799.+	chr1	159825799	159825800	+	0	NA	promoter-TSS (NM_001134233)	promoter-TSS (NM_001134233)	-662	NM_001134233	284677	Hs.647718	NM_001134233	ENSG00000188004	C1orf204	-	chromosome 1 open reading frame 204	protein-coding
chr5.1111282.+	chr5	1111282	1111283	+	0	NA	"intron (NM_006598, intron 1 of 23)"	"intron (NM_006598, intron 1 of 23)"	890	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr4.17513758.+	chr4	17513758	17513759	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	99	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr4.185174236.-	chr4	185174236	185174237	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35122	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr12.79439009.+	chr12	79439009	79439010	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-424	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr10.88702380.+	chr10	88702380	88702381	+	0	NA	"exon (NM_024756, exon 6 of 7)"	"exon (NM_024756, exon 6 of 7)"	15045	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chr1.25736510.+	chr1	25736510	25736511	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10853	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr12.49208389.+	chr12	49208389	49208390	+	0	NA	promoter-TSS (NM_001206916)	promoter-TSS (NM_001206916)	174	NM_001206917	784	Hs.737291	NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	"calcium channel, voltage-dependent, beta 3 subunit"	protein-coding
chr2.65360207.+	chr2	65360207	65360208	+	0	NA	Intergenic	AluY|SINE|Alu	-2772	NM_015543	5861	Hs.310645	NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	"RAB1A, member RAS oncogene family"	protein-coding
chr19.2187835.-	chr19	2187835	2187836	-	0	NA	"intron (NM_032482, intron 3 of 27)"	AluY|SINE|Alu	-23687	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr17.43255859.+	chr17	43255859	43255860	+	0	NA	Intergenic	AluY|SINE|Alu	17595	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr6.46742368.-	chr6	46742368	46742369	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18726	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chrM.16381.-	chrM	16381	16382	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.42642367.-	chr3	42642367	42642368	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-205	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr22.22550494.-	chr22	22550494	22550495	-	0	NA	Intergenic	Intergenic	48706	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr16.88873117.+	chr16	88873117	88873118	+	0	NA	"intron (NM_030928, intron 7 of 9)"	"intron (NM_030928, intron 7 of 9)"	2931	NM_030928	81620	Hs.122908	NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
chr9.133430103.+	chr9	133430103	133430104	+	0	NA	Intergenic	Intergenic	24778	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr12.120959437.-	chr12	120959437	120959438	-	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	-7527	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr19.58250029.+	chr19	58250029	58250030	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8135	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr2.107084287.+	chr2	107084287	107084288	+	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	514	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chrX.70493510.+	chrX	70493510	70493511	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9532	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr1.113336824.-	chr1	113336824	113336825	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73635	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr2.11541691.-	chr2	11541691	11541692	-	0	NA	"intron (NR_047499, intron 2 of 2)"	AluY|SINE|Alu	-7584	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	miscRNA
chr6.2221768.+	chr6	2221768	2221769	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24100	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr3.74440927.+	chr3	74440927	74440928	+	0	NA	"intron (NM_020872, intron 4 of 21)"	AluSx3|SINE|Alu	129416	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
chr6.42779242.+	chr6	42779242	42779243	+	0	NA	Intergenic	AluSc|SINE|Alu	-9552	NM_015349	23506	Hs.658033	NM_015349	ENSG00000112624	GLTSCR1L	KIAA0240	GLTSCR1-like	protein-coding
chr1.245026551.+	chr1	245026551	245026552	+	0	NA	"intron (NM_004501, intron 1 of 13)"	CpG	1276	NM_004501	3192	Hs.106212	NM_004501	ENSG00000153187	HNRNPU	HNRPU|SAF-A|U21.1|hnRNP U	heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)	protein-coding
chr10.119838579.-	chr10	119838579	119838580	-	0	NA	"intron (NR_026940, intron 3 of 3)"	AluY|SINE|Alu	-32247	NR_026939	255082	Hs.89387	NM_178816	ENSG00000177640	CASC2	C10orf5	cancer susceptibility candidate 2 (non-protein coding)	miscRNA
chr12.8961503.-	chr12	8961503	8961504	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	13647	NM_144670	144568	Hs.620532	NM_144670	ENSG00000166535	A2ML1	CPAMD9	alpha-2-macroglobulin-like 1	protein-coding
chr7.150076071.+	chr7	150076071	150076072	+	0	NA	promoter-TSS (NM_173680)	promoter-TSS (NM_173680)	-335	NM_173680	285971	Hs.655734	NM_173680	ENSG00000196456	ZNF775	-	zinc finger protein 775	protein-coding
chr17.1226041.+	chr17	1226041	1226042	+	0	NA	Intergenic	Intergenic	43084	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr3.57630947.-	chr3	57630947	57630948	-	0	NA	"intron (NM_152678, intron 11 of 19)"	AluSg|SINE|Alu	47732	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
chr20.44936245.+	chr20	44936245	44936246	+	0	NA	"intron (NM_021248, intron 1 of 11)"	CpG	892	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	"cadherin 22, type 2"	protein-coding
chr8.6812581.+	chr8	6812581	6812582	+	0	NA	Intergenic	AluSp|SINE|Alu	-3460	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr12.34501181.+	chr12	34501181	34501182	+	0	NA	Intergenic	GSATII|Satellite|centr	325965	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr10.108027474.-	chr10	108027474	108027475	-	0	NA	Intergenic	LTR1D|LTR|ERV1	-896992	NM_001206570	114815	Hs.591915	NM_001013031	ENSG00000108018	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chr1.65532997.+	chr1	65532997	65532998	+	0	NA	Intergenic	CpG	-8806	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr1.54839905.-	chr1	54839905	54839906	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32074	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr3.133292594.+	chr3	133292594	133292595	+	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	160	NM_017548	55573	Hs.518265	NM_001134422	ENSG00000091527	CDV3	H41	CDV3 homolog (mouse)	protein-coding
chrX.11749468.-	chrX	11749468	11749469	-	0	NA	Intergenic	AluSx|SINE|Alu	26810	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr15.20545744.+	chr15	20545744	20545745	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	57747	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr2.241780290.-	chr2	241780290	241780291	-	0	NA	Intergenic	Intergenic	20565	NM_001244008	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr12.49857019.+	chr12	49857019	49857020	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	74062	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr19.11463929.+	chr19	11463929	11463930	+	0	NA	"intron (NM_001080503, intron 7 of 10)"	AluSc8|SINE|Alu	-2133	NM_001170635	64748	Hs.6846	NM_001170635	ENSG00000105520	LPPR2	PRG4	lipid phosphate phosphatase-related protein type 2	protein-coding
chr8.123636966.+	chr8	123636966	123636967	+	0	NA	Intergenic	AluSx|SINE|Alu	-156935	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr1.197418605.+	chr1	197418605	197418606	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181271	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr18.73520570.-	chr18	73520570	73520571	-	0	NA	Intergenic	Intergenic	314383	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	miscRNA
chr15.57179644.+	chr15	57179644	57179645	+	0	NA	"non-coding (NR_015419, exon 4 of 4)"	"non-coding (NR_015419, exon 4 of 4)"	31053	NR_015419	145783	Hs.620525	NR_015419	ENSG00000259484	LOC145783	-	uncharacterized LOC145783	miscRNA
chr5.37382626.+	chr5	37382626	37382627	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3214	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chrX.144902979.+	chrX	144902979	144902980	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	113	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr1.225992227.-	chr1	225992227	225992228	-	0	NA	Intergenic	AluY|SINE|Alu	5570	NM_001136018	2052	Hs.89649	NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	"epoxide hydrolase 1, microsomal (xenobiotic)"	protein-coding
chr15.63892628.+	chr15	63892628	63892629	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	398	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr1.39210049.-	chr1	39210049	39210050	-	0	NA	Intergenic	Intergenic	-115446	NM_022157	64121	Hs.532461	NM_001271851		RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
chr9.133788059.+	chr9	133788059	133788060	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18834	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr2.239047579.-	chr2	239047579	239047580	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-216	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr19.45660339.+	chr19	45660339	45660340	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3069	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr12.131382761.+	chr12	131382761	131382762	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	26144	NM_006325	5901	Hs.10842	NM_006325		RAN	ARA24|Gsp1|TC4	"RAN, member RAS oncogene family"	protein-coding
chr12.32064861.-	chr12	32064861	32064862	-	0	NA	Intergenic	AluY|SINE|Alu	47492	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr19.21395690.-	chr19	21395690	21395691	-	0	NA	Intergenic	SVA_B|Other|Other	-70850	NM_133473	170959	Hs.687547	NM_133473	ENSG00000196705	ZNF431	-	zinc finger protein 431	protein-coding
chr1.151199128.-	chr1	151199128	151199129	-	0	NA	"intron (NM_001135638, intron 3 of 15)"	AluSq2|SINE|Alu	28069	NM_002810	5710	Hs.505059	NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 4"	protein-coding
chr2.237067793.-	chr2	237067793	237067794	-	0	NA	Intergenic	Intergenic	-8859	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr6.4780653.+	chr6	4780653	4780654	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3973	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr17.27717856.+	chr17	27717856	27717857	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-87	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr12.79439085.-	chr12	79439085	79439086	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	348	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr2.122878796.+	chr2	122878796	122878797	+	0	NA	Intergenic	AluY|SINE|Alu	365675	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr3.158905920.-	chr3	158905920	158905921	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	AluSq2|SINE|Alu	85116	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr11.44361773.-	chr11	44361773	44361774	-	0	NA	Intergenic	AluJb|SINE|Alu	30057	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr5.131832489.+	chr5	131832489	131832490	+	0	NA	Intergenic	CpG	-6024	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr6.27494282.-	chr6	27494282	27494283	-	0	NA	Intergenic	AluY|SINE|Alu	53385	NM_007149	7738	Hs.158174	NM_007149	ENSG00000096654	ZNF184	-	zinc finger protein 184	protein-coding
chr7.95178718.-	chr7	95178718	95178719	-	0	NA	Intergenic	AluY|SINE|Alu	-47207	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr6.12041583.-	chr6	12041583	12041584	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28859	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr16.1835900.+	chr16	1835900	1835901	+	0	NA	"intron (NM_012225, intron 1 of 6)"	"intron (NM_012225, intron 1 of 6)"	2967	NM_012225	10101	Hs.256549	NM_012225	ENSG00000095906	NUBP2	CFD1|NUBP1	nucleotide binding protein 2	protein-coding
chr7.2966830.-	chr7	2966830	2966831	-	0	NA	"intron (NM_032415, intron 13 of 24)"	"intron (NM_032415, intron 13 of 24)"	82871	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr1.27503558.-	chr1	27503558	27503559	-	0	NA	Intergenic	Intergenic	21937	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr4.989190.-	chr4	989190	989191	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1966	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr13.88664961.-	chr13	88664961	88664962	-	0	NA	Intergenic	AluSx1|SINE|Alu	-340091	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr19.34958567.+	chr19	34958567	34958568	+	0	NA	"intron (NM_005499, intron 16 of 16)"	AluSx3|SINE|Alu	-14313	NM_001080436	126374	Hs.585010	NM_001080436		WTIP	-	Wilms tumor 1 interacting protein	protein-coding
chr16.54578155.+	chr16	54578155	54578156	+	0	NA	Intergenic	AluYa5|SINE|Alu	-257777	NM_024336	79191	Hs.499205	NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
chr1.197042158.-	chr1	197042158	197042159	-	0	NA	Intergenic	AluY|SINE|Alu	5761	NM_001994	2165	Hs.435782	NM_001994	ENSG00000143278	F13B	FXIIIB	"coagulation factor XIII, B polypeptide"	protein-coding
chr1.32919099.+	chr1	32919099	32919100	+	0	NA	Intergenic	AluSx|SINE|Alu	-11559	NM_001145720	728116	Hs.647658	NM_001145720	ENSG00000215897	ZBTB8B	RP1-27O5.1|ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
chr14.102109472.+	chr14	102109472	102109473	+	0	NA	Intergenic	AluY|SINE|Alu	81784	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr5.526577.-	chr5	526577	526578	-	0	NA	Intergenic	Intergenic	2028	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr2.239047572.-	chr2	239047572	239047573	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-209	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr19.2841818.-	chr19	2841818	2841819	-	0	NA	"intron (NM_001172775, intron 1 of 3)"	CpG	-385	NM_001172775	148254	Hs.47712	NM_001172775	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
chr14.101892654.-	chr14	101892654	101892655	-	0	NA	Intergenic	AluY|SINE|Alu	-129359	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr15.41613514.+	chr15	41613514	41613515	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11305	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr14.105957535.+	chr14	105957535	105957536	+	0	NA	promoter-TSS (NM_001134875)	promoter-TSS (NM_001134875)	-51	NM_001134875	283643	Hs.720306	NM_173608	ENSG00000185347	C14orf80	-	chromosome 14 open reading frame 80	protein-coding
chr5.18111611.-	chr5	18111611	18111612	-	0	NA	Intergenic	AluY|SINE|Alu	724192	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chrX.134124977.-	chrX	134124977	134124978	-	0	NA	promoter-TSS (NM_001163438)	promoter-TSS (NM_001163438)	-9	NM_001163438	644538	Hs.42239	NM_001163438	ENSG00000184785	SMIM10	CXorf69	small integral membrane protein 10	protein-coding
chrX.132930102.-	chrX	132930102	132930103	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189571	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr13.50177131.+	chr13	50177131	50177132	+	0	NA	Intergenic	AluY|SINE|Alu	-17412	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr2.122878808.-	chr2	122878808	122878809	-	0	NA	Intergenic	AluY|SINE|Alu	-365687	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr5.177611059.+	chr5	177611059	177611060	+	0	NA	TTS (NR_003281)	TTS (NR_003281)	3374	NR_003281	64396	Hs.591738	NR_003281		GMCL1P1	GCL|GMCL1L|GMCL2	"germ cell-less, spermatogenesis associated 1 pseudogene 1"	pseudo
chr1.32731857.-	chr1	32731857	32731858	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7855	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr5.21341899.+	chr5	21341899	21341900	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-117690	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr5.685112.-	chr5	685112	685113	-	0	NA	"intron (NM_007030, intron 1 of 3)"	"intron (NM_007030, intron 1 of 3)"	-8398	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr5.25535463.+	chr5	25535463	25535464	+	0	NA	Intergenic	AluY|SINE|Alu	-694771	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr8.120878162.+	chr8	120878162	120878163	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7738	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr20.39978486.-	chr20	39978486	39978487	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8926	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr16.70207339.+	chr16	70207339	70207340	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-589	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr7.71239454.+	chr7	71239454	71239455	+	0	NA	Intergenic	AluSx1|SINE|Alu	-466698	NR_037477	100500836		NR_037477	ENSG00000265878	MIR3914-1	-	microRNA 3914-1	miscRNA
chr4.42659045.+	chr4	42659045	42659046	+	0	NA	promoter-TSS (NM_001105529)	promoter-TSS (NM_001105529)	77	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr7.36403677.+	chr7	36403677	36403678	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	"intron (NM_001100425, intron 2 of 6)"	3105	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr15.55673029.-	chr15	55673029	55673030	-	0	NA	"intron (NR_037923, intron 10 of 15)"	AluSx3|SINE|Alu	7797	NR_030358	693213		NR_030358		MIR628	MIRN628|hsa-mir-628	microRNA 628	miscRNA
chr5.92346239.+	chr5	92346239	92346240	+	0	NA	Intergenic	AluSq2|SINE|Alu	560260	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr8.26241060.-	chr8	26241060	26241061	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-537	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr11.120384422.-	chr11	120384422	120384423	-	0	NA	Intergenic	Intergenic	146606	NM_014619	2900	Hs.568901	NM_014619		GRIK4	EAA1|GRIK|GluK4|KA1	"glutamate receptor, ionotropic, kainate 4"	protein-coding
chr18.77244870.+	chr18	77244870	77244871	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84544	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr6.122006979.-	chr6	122006979	122006980	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-250234	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr16.58300820.-	chr16	58300820	58300821	-	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	-16980	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr5.133831548.-	chr5	133831548	133831549	-	0	NA	Intergenic	AluY|SINE|Alu	30250	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chrX.12751727.-	chrX	12751727	12751728	-	0	NA	Intergenic	AluY|SINE|Alu	57747	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr11.6429163.+	chr11	6429163	6429164	+	0	NA	"intron (NM_001257324, intron 1 of 7)"	AluYb8|SINE|Alu	-2272	NM_001257320	322	Hs.372840	NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	protein-coding
chr5.176238078.-	chr5	176238078	176238079	-	0	NA	"intron (NM_133369, intron 1 of 14)"	CpG	-518	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 homolog A (C. elegans)	protein-coding
chr3.133393537.-	chr3	133393537	133393538	-	0	NA	Intergenic	CpG	12800	NM_007027	11073	Hs.593379	NM_007027	ENSG00000163781	TOPBP1	TOP2BP1	topoisomerase (DNA) II binding protein 1	protein-coding
chr12.58059253.-	chr12	58059253	58059254	-	0	NA	Intergenic	SVA_A|Other|Other	28485	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr18.11867668.-	chr18	11867668	11867669	-	0	NA	"intron (NM_182978, intron 8 of 11)"	AluYk4|SINE|Alu	-10231	NM_001261444	2774	Hs.741448	NM_002071	ENSG00000141404	GNAL	-	"guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type"	protein-coding
chrX.9366092.+	chrX	9366092	9366093	+	0	NA	Intergenic	AluY|SINE|Alu	-65243	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr19.13264092.-	chr19	13264092	13264093	-	0	NA	"exon (NM_004907, exon 2 of 2)"	"exon (NM_004907, exon 2 of 2)"	-2810	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr8.30533835.-	chr8	30533835	30533836	-	0	NA	Intergenic	AluY|SINE|Alu	18097	NM_002095	2961	Hs.77100	NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B	"general transcription factor IIE, polypeptide 2, beta 34kDa"	protein-coding
chr2.96931858.-	chr2	96931858	96931859	-	0	NA	promoter-TSS (NM_001193304)	promoter-TSS (NM_001193304)	26	NM_004804	9391	Hs.12109	NM_004804		CIAO1	CIA1|WDR39	cytosolic iron-sulfur protein assembly 1	protein-coding
chr19.54255206.+	chr19	54255206	54255207	+	0	NA	promoter-TSS (NR_030218)	promoter-TSS (NR_030218)	-445	NR_030218	574496		NR_030218	ENSG00000207992	MIR519A1	MIRN519A-1|MIRN519A1	microRNA 519a-1	miscRNA
chr17.79089779.-	chr17	79089779	79089780	-	0	NA	"3' UTR (NM_001144888, exon 14 of 14)"	"3' UTR (NM_001144888, exon 14 of 14)"	-9394	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr2.128272455.-	chr2	128272455	128272456	-	0	NA	"intron (NM_017969, intron 2 of 13)"	LTR27B|LTR|ERV1	-11632	NM_017969	55677	Hs.469879	NM_017969	ENSG00000163166	IWS1	-	IWS1 homolog (S. cerevisiae)	protein-coding
chr7.158218545.-	chr7	158218545	158218546	-	0	NA	"intron (NM_130842, intron 1 of 21)"	CpG	-106960	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr22.30089712.+	chr22	30089712	30089713	+	0	NA	"intron (NM_181832, intron 16 of 16)"	"intron (NM_181832, intron 16 of 16)"	-26632	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
chr17.78234140.-	chr17	78234140	78234141	-	0	NA	promoter-TSS (NM_020954)	promoter-TSS (NM_020954)	520	NM_001256071	57674	Hs.743310	NM_001256071	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
chr4.1723297.-	chr4	1723297	1723298	-	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	-80	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr10.28821889.-	chr10	28821889	28821890	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-467	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr18.12734544.-	chr18	12734544	12734545	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31557	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr20.62611068.-	chr20	62611068	62611069	-	0	NA	promoter-TSS (NM_080621)	promoter-TSS (NM_080621)	73	NM_080621	140700	Hs.27189	NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
chr16.443654.-	chr16	443654	443655	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3538	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr5.45596278.-	chr5	45596278	45596279	-	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	-99942	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr20.44035473.+	chr20	44035473	44035474	+	0	NA	"intron (NM_001048223, intron 1 of 3)"	CpG	245	NM_001048224	55861	Hs.730643	NM_001048221	ENSG00000244274	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding
chr6.160985688.+	chr6	160985688	160985689	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53532	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr17.80189113.-	chr17	80189113	80189114	-	0	NA	promoter-TSS (NM_001042423)	promoter-TSS (NM_001042423)	995	NM_001042423	9123	Hs.500761	NM_001042422	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	"solute carrier family 16, member 3 (monocarboxylic acid transporter 4)"	protein-coding
chr2.136403838.+	chr2	136403838	136403839	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19129	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr14.101693728.-	chr14	101693728	101693729	-	0	NA	Intergenic	Intergenic	-157480	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr3.102974044.+	chr3	102974044	102974045	+	0	NA	Intergenic	SVA_D|Other|Other	820185	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr2.71357893.-	chr2	71357893	71357894	-	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-449	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr6.159416878.+	chr6	159416878	159416879	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4320	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr10.133869250.-	chr10	133869250	133869251	-	0	NA	Intergenic	Intergenic	49063	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr1.567432.+	chr1	567432	567433	+	0	NA	Intergenic	Intergenic	54602	NM_001005224	26683	Hs.722724	NM_001005224	ENSG00000230178	OR4F3	-	"olfactory receptor, family 4, subfamily F, member 3"	protein-coding
chr12.4382903.+	chr12	4382903	4382904	+	0	NA	promoter-TSS (NM_001759)	promoter-TSS (NM_001759)	1	NM_001759	894	Hs.376071	NM_001759	ENSG00000118971	CCND2	KIAK0002	cyclin D2	protein-coding
chr3.102974004.+	chr3	102974004	102974005	+	0	NA	Intergenic	SVA_D|Other|Other	820145	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr13.114446702.+	chr13	114446702	114446703	+	0	NA	Intergenic	Intergenic	7360	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr2.62740961.+	chr2	62740961	62740962	+	0	NA	Intergenic	AluY|SINE|Alu	-7357	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chrX.81762739.-	chrX	81762739	81762740	-	0	NA	Intergenic	AluY|SINE|Alu	1000530	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr16.58760643.-	chr16	58760643	58760644	-	0	NA	"intron (NM_002080, intron 1 of 9)"	AluSz|SINE|Alu	-7603	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr2.21484576.+	chr2	21484576	21484577	+	0	NA	Intergenic	Intergenic	-217631	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr5.30269947.-	chr5	30269947	30269948	-	0	NA	Intergenic	AluY|SINE|Alu	923815	NM_004932	1004	Hs.171054	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	"cadherin 6, type 2, K-cadherin (fetal kidney)"	protein-coding
chr20.1317942.+	chr20	1317942	1317943	+	0	NA	"intron (NR_040047, intron 1 of 2)"	MIR|SINE|MIR	-8063	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr7.95234840.-	chr7	95234840	95234841	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8915	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr4.101388698.+	chr4	101388698	101388699	+	0	NA	"intron (NM_001159694, intron 3 of 10)"	AluYk12|SINE|Alu	50552	NM_016242	51705	Hs.152913	NM_001159694	ENSG00000164035	EMCN	EMCN2|MUC14	endomucin	protein-coding
chr9.72101701.-	chr9	72101701	72101702	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157460	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr5.176482980.-	chr5	176482980	176482981	-	0	NA	"intron (NM_012279, intron 5 of 6)"	AluSx|SINE|Alu	30941	NM_213647	2264	Hs.165950	NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
chr6.379601.+	chr6	379601	379602	+	0	NA	Intergenic	Intergenic	-12138	NR_046000	3662	Hs.401013	NM_001195286	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
chr16.29937657.-	chr16	29937657	29937658	-	0	NA	promoter-TSS (NM_178863)	promoter-TSS (NM_178863)	112	NM_178863	253980	Hs.534590	NM_178863	ENSG00000174943	KCTD13	PDIP1|POLDIP1|hBACURD1	potassium channel tetramerisation domain containing 13	protein-coding
chr16.84454707.+	chr16	84454707	84454708	+	0	NA	"intron (NM_014861, intron 7 of 26)"	AluSx1|SINE|Alu	52574	NM_014861	9914	Hs.6168	NM_014861	ENSG00000064270	ATP2C2	SPCA2	"ATPase, Ca++ transporting, type 2C, member 2"	protein-coding
chr8.54998365.-	chr8	54998365	54998366	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16212	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr1.2259977.+	chr1	2259977	2259978	+	0	NA	"intron (NM_024848, intron 12 of 13)"	"intron (NM_024848, intron 12 of 13)"	24123	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr17.50891897.-	chr17	50891897	50891898	-	0	NA	Intergenic	AluY|SINE|Alu	170983	NM_001243552	100506650	Hs.146556	NM_001243552	ENSG00000227011	C17orf112	-	chromosome 17 open reading frame 112	protein-coding
chrX.86721015.-	chrX	86721015	86721016	-	0	NA	Intergenic	SVA_C|Other|Other	51700	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr3.36421961.-	chr3	36421961	36421962	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	136	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr8.144631931.-	chr8	144631931	144631932	-	0	NA	Intergenic	CpG	3626	NM_001166237	79792	Hs.118983	NM_001166237	ENSG00000104518	GSDMD	DF5L|DFNA5L|GSDMDC1	gasdermin D	protein-coding
chr2.81982297.+	chr2	81982297	81982298	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101630	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr5.187365.+	chr5	187365	187366	+	0	NA	"3' UTR (NM_052909, exon 18 of 18)"	"3' UTR (NM_052909, exon 18 of 18)"	-4261	NM_001080478	389257	Hs.683662	NM_001080478		LRRC14B	-	leucine rich repeat containing 14B	protein-coding
chr12.6665504.+	chr12	6665504	6665505	+	0	NA	promoter-TSS (NM_001039670)	promoter-TSS (NM_001039670)	-255	NR_036467	25900	Hs.15243	NM_001039670	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
chr3.69285675.+	chr3	69285675	69285676	+	0	NA	"intron (NM_015123, intron 7 of 22)"	AluSx1|SINE|Alu	-113929	NM_198271	56203	Hs.350621	NM_198271	ENSG00000163380	LMOD3	-	leiomodin 3 (fetal)	protein-coding
chr1.218195562.+	chr1	218195562	218195563	+	0	NA	Intergenic	AluY|SINE|Alu	129320	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr6.12012462.+	chr6	12012462	12012463	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-262	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr20.33283444.-	chr20	33283444	33283445	-	0	NA	Intergenic	AluY|SINE|Alu	8704	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr7.77452597.-	chr7	77452597	77452598	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16850	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr10.129196013.+	chr10	129196013	129196014	+	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	-151600	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr1.228733939.-	chr1	228733939	228733940	-	0	NA	Intergenic	HSAT4|Satellite|centr	46455	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr5.118447864.+	chr5	118447864	118447865	+	0	NA	"intron (NM_005509, intron 5 of 42)"	AluY|SINE|Alu	40780	NM_005509	1657	Hs.181042	NM_005509	ENSG00000172869	DMXL1	-	Dmx-like 1	protein-coding
chr12.6866154.+	chr12	6866154	6866155	+	0	NA	Intergenic	AluSp|SINE|Alu	-3518	NR_026581	8079	Hs.524214	NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
chr1.243422527.+	chr1	243422527	243422528	+	0	NA	"intron (NM_006642, intron 1 of 17)"	AluY|SINE|Alu	3220	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
chr16.790525.-	chr16	790525	790526	-	0	NA	"intron (NM_022493, intron 1 of 10)"	GC_rich|Low_complexity|Low_complexity	-472	NM_022493	64428	Hs.513247	NM_022493	ENSG00000103245	NARFL	HPRN|IOP1|LET1L|PRN	nuclear prelamin A recognition factor-like	protein-coding
chr6.25384324.-	chr6	25384324	25384325	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104668	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr10.134324011.+	chr10	134324011	134324012	+	0	NA	Intergenic	Intergenic	-27342	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr16.656941.+	chr16	656941	656942	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	"intron (NM_001172663, intron 2 of 6)"	16768	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr9.38829833.-	chr9	38829833	38829834	-	0	NA	Intergenic	AluY|SINE|Alu	-208748	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr9.66837881.-	chr9	66837881	66837882	-	0	NA	Intergenic	Intergenic	-194191	NR_046175	286297	Hs.645503	NR_046175	ENSG00000182021	LOC286297	-	uncharacterized LOC286297	miscRNA
chr19.48814060.-	chr19	48814060	48814061	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9272	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr7.1286197.-	chr7	1286197	1286198	-	0	NA	Intergenic	CpG	-13543	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr14.23517082.-	chr14	23517082	23517083	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5706	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr3.102974056.+	chr3	102974056	102974057	+	0	NA	Intergenic	SVA_D|Other|Other	820197	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr9.116102457.-	chr9	116102457	116102458	-	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	-163	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr16.1845108.+	chr16	1845108	1845109	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-199	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr2.24809070.-	chr2	24809070	24809071	-	0	NA	"intron (NM_003743, intron 1 of 20)"	AluSx1|SINE|Alu	-1724	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
chr3.42642503.-	chr3	42642503	42642504	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-69	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr10.94759572.+	chr10	94759572	94759573	+	0	NA	"intron (NM_001013848, intron 19 of 21)"	AluSx1|SINE|Alu	-61449	NM_183374	340665	Hs.369993	NM_183374	ENSG00000187553	CYP26C1	FFDD4	"cytochrome P450, family 26, subfamily C, polypeptide 1"	protein-coding
chr22.41215419.-	chr22	41215419	41215420	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	27	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr15.74425230.-	chr15	74425230	74425231	-	0	NA	"exon (NM_001130136, exon 4 of 4)"	"exon (NM_001130136, exon 4 of 4)"	-2487	NM_020851	57611	Hs.254775	NM_001130136	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding
chr14.106165457.+	chr14	106165457	106165458	+	0	NA	Intergenic	Intergenic	-26313	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	"ELK2A, member of ETS oncogene family, pseudogene"	pseudo
chr1.228559042.-	chr1	228559042	228559043	-	0	NA	"exon (NM_001098623, exon 94 of 105)"	"exon (NM_001098623, exon 94 of 105)"	-35475	NM_145214	81559	Hs.13543	NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
chr12.120959449.+	chr12	120959449	120959450	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7515	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chrX.129231022.+	chrX	129231022	129231023	+	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	13453	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr4.185394529.-	chr4	185394529	185394530	-	0	NA	"intron (NM_002199, intron 1 of 8)"	CpG	-1197	NM_002199	3660	Hs.654566	NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
chr7.55379474.+	chr7	55379474	55379475	+	0	NA	Intergenic	SVA_D|Other|Other	-53667	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr19.38836236.-	chr19	38836236	38836237	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9793	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr9.134449887.-	chr9	134449887	134449888	-	0	NA	Intergenic	AluSx1|SINE|Alu	43225	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr12.120554869.-	chr12	120554869	120554870	-	0	NA	promoter-TSS (NM_006861)	promoter-TSS (NM_006861)	226	NM_006861	11021	Hs.524788	NM_001167606	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	"RAB35, member RAS oncogene family"	protein-coding
chr3.32863303.+	chr3	32863303	32863304	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3793	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr14.101693619.+	chr14	101693619	101693620	+	0	NA	Intergenic	Intergenic	157371	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr8.144503754.-	chr8	144503754	144503755	-	0	NA	Intergenic	CpG	-8848	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr1.220909508.-	chr1	220909508	220909509	-	0	NA	Intergenic	AluSc|SINE|Alu	12168	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr13.25859741.-	chr13	25859741	25859742	-	0	NA	"intron (NM_004685, intron 1 of 13)"	AluSx1|SINE|Alu	-1963	NM_004685	9107	Hs.643702	NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
chr20.2673444.-	chr20	2673444	2673445	-	0	NA	promoter-TSS (NM_001110514)	promoter-TSS (NM_001110514)	80	NM_001110514	57593	Hs.471955	NM_001110514	ENSG00000088881	EBF4	COE4|O/E-4	early B-cell factor 4	protein-coding
chr19.50437557.+	chr19	50437557	50437558	+	0	NA	TTS (NM_012068)	TTS (NM_012068)	1236	NR_039906	100616483		NR_039906		MIR4751	-	microRNA 4751	miscRNA
chr17.74707077.+	chr17	74707077	74707078	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-21	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr6.151727626.-	chr6	151727626	151727627	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14949	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr22.41715340.-	chr22	41715340	41715341	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17833	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr10.104474384.-	chr10	104474384	104474385	-	0	NA	promoter-TSS (NM_004311)	promoter-TSS (NM_004311)	-86	NM_178858	118980	Hs.44070	NM_178858	ENSG00000156398	SFXN2	-	sideroflexin 2	protein-coding
chr9.28773084.-	chr9	28773084	28773085	-	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	53781	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr2.4156475.+	chr2	4156475	4156476	+	0	NA	Intergenic	Intergenic	-134853	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr3.93689342.+	chr3	93689342	93689343	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3592	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr14.101693732.-	chr14	101693732	101693733	-	0	NA	Intergenic	Intergenic	-157484	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr12.123921365.-	chr12	123921365	123921366	-	0	NA	promoter-TSS (NM_145058)	promoter-TSS (NM_145058)	101	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr15.37172802.-	chr15	37172802	37172803	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5932	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr6.34004229.+	chr6	34004229	34004230	+	0	NA	"exon (NM_000841, exon 9 of 11)"	"exon (NM_000841, exon 9 of 11)"	-36401	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr12.49856920.+	chr12	49856920	49856921	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	73963	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr14.77743563.+	chr14	77743563	77743564	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5908	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr2.227662423.+	chr2	227662423	227662424	+	0	NA	"exon (NM_005544, exon 1 of 2)"	"exon (NM_005544, exon 1 of 2)"	1083	NM_005544	3667	Hs.471508	NM_005544		IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
chr7.394829.+	chr7	394829	394830	+	0	NA	Intergenic	Intergenic	-24562	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr21.9827466.+	chr21	9827466	9827467	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	1263	NR_037458	100500815		NR_037458	ENSG00000264063	MIR3687	-	microRNA 3687	miscRNA
chr4.83374329.+	chr4	83374329	83374330	+	0	NA	"intron (NM_021204, intron 3 of 5)"	AluY|SINE|Alu	22603	NM_021204	58478	Hs.18442	NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145	enolase-phosphatase 1	protein-coding
chr16.29416013.-	chr16	29416013	29416014	-	0	NA	Intergenic	Intergenic	44653	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr4.166248591.-	chr4	166248591	166248592	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	227	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr14.80915490.+	chr14	80915490	80915491	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-218093	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr2.178267576.-	chr2	178267576	178267577	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10105	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr11.100596542.+	chr11	100596542	100596543	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38135	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr20.31414391.-	chr20	31414391	31414392	-	0	NA	"intron (NM_012325, intron 2 of 6)"	AluSz|SINE|Alu	-6692	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	"microtubule-associated protein, RP/EB family, member 1"	protein-coding
chr9.127885814.+	chr9	127885814	127885815	+	0	NA	"intron (NM_173690, intron 2 of 18)"	AluSc8|SINE|Alu	20024	NM_173690	286205	Hs.59504	NM_001144877		SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
chr7.64199173.-	chr7	64199173	64199174	-	0	NA	Intergenic	SVA_D|Other|Other	55593	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr16.67519976.-	chr16	67519976	67519977	-	0	NA	Intergenic	AluY|SINE|Alu	2260	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr14.105158946.+	chr14	105158946	105158947	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	3003	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr8.137542861.+	chr8	137542861	137542862	+	0	NA	Intergenic	LTR12C|LTR|ERV1	1073145	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	"KH domain containing, RNA binding, signal transduction associated 3"	protein-coding
chr1.51984049.-	chr1	51984049	51984050	-	0	NA	"intron (NM_001981, intron 1 of 24)"	"intron (NM_001981, intron 1 of 24)"	-946	NM_001981	2060	Hs.83722	NM_001159969	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
chr6.13335708.-	chr6	13335708	13335709	-	0	NA	Intergenic	AluYa5|SINE|Alu	6921	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr19.35531909.-	chr19	35531909	35531910	-	0	NA	TTS (NM_001037)	TTS (NM_001037)	-499	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr9.127900828.+	chr9	127900828	127900829	+	0	NA	"intron (NM_173690, intron 2 of 18)"	AluY|SINE|Alu	5010	NM_173690	286205	Hs.59504	NM_001144877		SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
chr2.170684187.+	chr2	170684187	170684188	+	0	NA	"exon (NM_172070, exon 1 of 39)"	"exon (NM_172070, exon 1 of 39)"	169	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr9.1044871.+	chr9	1044871	1044872	+	0	NA	Intergenic	Intergenic	-5475	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr3.115832416.+	chr3	115832416	115832417	+	0	NA	"intron (NM_002338, intron 1 of 6)"	AluYa5|SINE|Alu	331969	NM_002338	4045	Hs.723683	NM_002338		LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
chr14.104887860.-	chr14	104887860	104887861	-	0	NA	Intergenic	Intergenic	158196	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chr17.80431696.-	chr17	80431696	80431697	-	0	NA	"intron (NM_012336, intron 5 of 10)"	AluSz|SINE|Alu	-15156	NM_001083608	26502	Hs.600304	NM_001038618	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
chr11.118662530.+	chr11	118662530	118662531	+	0	NA	promoter-TSS (NM_004397)	promoter-TSS (NM_004397)	-558	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr7.627648.+	chr7	627648	627649	+	0	NA	"intron (NM_002735, intron 7 of 10)"	"intron (NM_002735, intron 7 of 10)"	67620	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr22.51110972.+	chr22	51110972	51110973	+	0	NA	Intergenic	Intergenic	-2098	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr2.128965906.-	chr2	128965906	128965907	-	0	NA	Intergenic	SVA_F|Other|Other	-110265	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr7.1798887.-	chr7	1798887	1798888	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50089	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr10.23067229.-	chr10	23067229	23067230	-	0	NA	Intergenic	AluSz|SINE|Alu	63726	NM_005028	5305	Hs.57079	NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	"phosphatidylinositol-5-phosphate 4-kinase, type II, alpha"	protein-coding
chr5.17207783.+	chr5	17207783	17207784	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9149	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr13.71053611.-	chr13	71053611	71053612	-	0	NA	Intergenic	AluSc|SINE|Alu	370986	NM_020866	57626	Hs.508201	NM_020866	ENSG00000150361	KLHL1	MRP2	kelch-like family member 1	protein-coding
chr16.634235.+	chr16	634235	634236	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-5122	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr6.2221729.+	chr6	2221729	2221730	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24139	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr8.141559336.-	chr8	141559336	141559337	-	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	-37255	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr2.131655147.+	chr2	131655147	131655148	+	0	NA	Intergenic	Intergenic	-19077	NM_032995	50649	Hs.469935	NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
chr13.45131242.+	chr13	45131242	45131243	+	0	NA	"intron (NM_183422, intron 1 of 2)"	AluSp|SINE|Alu	-18790	NR_038381	641467	Hs.624196	NR_038381		TSC22D1-AS1	-	TSC22D1 antisense RNA 1	miscRNA
chr8.3825583.-	chr8	3825583	3825584	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026745	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr2.58008310.+	chr2	58008310	58008311	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265467	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr2.220430200.+	chr2	220430200	220430201	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6068	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr22.46303163.-	chr22	46303163	46303164	-	0	NA	Intergenic	Intergenic	-69845	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr5.37295982.-	chr5	37295982	37295983	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46452	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr10.81146793.+	chr10	81146793	81146794	+	0	NA	"intron (NM_153367, intron 3 of 3)"	"intron (NM_153367, intron 3 of 3)"	39573	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr11.1226182.+	chr11	1226182	1226183	+	0	NA	Intergenic	Intergenic	-18113	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr13.112726537.-	chr13	112726537	112726538	-	0	NA	TTS (NM_005986)	TTS (NM_005986)	-4624	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr10.134034422.+	chr10	134034422	134034423	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34008	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr6.165953197.-	chr6	165953197	165953198	-	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	-122391	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chrX.152752175.-	chrX	152752175	152752176	-	0	NA	"intron (NR_073156, intron 1 of 12)"	"intron (NR_073156, intron 1 of 12)"	8172	NM_001711	633	Hs.821	NM_001711	ENSG00000182492	BGN	DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding
chr17.77776835.+	chr17	77776835	77776836	+	0	NA	Intergenic	CpG-11232	-5920	NM_020649	57332	Hs.387258	NM_020649		CBX8	PC3|RC1	chromobox homolog 8	protein-coding
chr11.75393073.+	chr11	75393073	75393074	+	0	NA	Intergenic	AluY|SINE|Alu	-13594	NM_033063	4135	Hs.585540	NM_033063	ENSG00000171533	MAP6	MTAP6|N-STOP|STOP	microtubule-associated protein 6	protein-coding
chr15.29132959.-	chr15	29132959	29132960	-	0	NA	Intergenic	Intergenic	39138	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr8.80598047.+	chr8	80598047	80598048	+	0	NA	Intergenic	AluSz|SINE|Alu	74998	NM_001199214	11075	Hs.521651	NM_001199214	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin-like 2	protein-coding
chr12.34500195.+	chr12	34500195	34500196	+	0	NA	Intergenic	Intergenic	324979	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr4.8629339.+	chr4	8629339	8629340	+	0	NA	Intergenic	AluSx1|SINE|Alu	34952	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr16.85880951.+	chr16	85880951	85880952	+	0	NA	Intergenic	Intergenic	47778	NM_001861	1327	Hs.433419	NM_001861	ENSG00000131143	COX4I1	COX4|COX4-1|COXIV	cytochrome c oxidase subunit IV isoform 1	protein-coding
chr2.120282016.-	chr2	120282016	120282017	-	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	-12	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr10.59080738.+	chr10	59080738	59080739	+	0	NA	Intergenic	AluY|SINE|Alu	-16419	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr1.168105510.-	chr1	168105510	168105511	-	0	NA	"exon (NM_001267613, exon 1 of 5)"	"exon (NM_001267613, exon 1 of 5)"	-164	NM_001267612	23432	Hs.271809	NM_007369		GPR161	RE2	G protein-coupled receptor 161	protein-coding
chr12.8961506.-	chr12	8961506	8961507	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	13644	NM_144670	144568	Hs.620532	NM_144670	ENSG00000166535	A2ML1	CPAMD9	alpha-2-macroglobulin-like 1	protein-coding
chr10.135270827.-	chr10	135270827	135270828	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3395	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr3.1900257.-	chr3	1900257	1900258	-	0	NA	Intergenic	AluSp|SINE|Alu	240293	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr2.21484593.+	chr2	21484593	21484594	+	0	NA	Intergenic	Intergenic	-217648	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr7.99630230.+	chr7	99630230	99630231	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17011	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr5.128197066.+	chr5	128197066	128197067	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104144	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr2.87655669.-	chr2	87655669	87655670	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	99305	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr12.43208398.+	chr12	43208398	43208399	+	0	NA	Intergenic	AluY|SINE|Alu	-224826	NM_153026	144165	Hs.720221	NM_001144881	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
chr3.126194785.-	chr3	126194785	126194786	-	0	NA	promoter-TSS (NM_025112)	promoter-TSS (NM_025112)	23	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr8.142440421.-	chr8	142440421	142440422	-	0	NA	"intron (NM_032611, intron 4 of 4)"	CpG	-8414	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr15.25196053.-	chr15	25196053	25196054	-	0	NA	"intron (NM_022807, intron 4 of 12)"	AluSx1|SINE|Alu	4017	NM_022804	8926	Hs.564847	NM_005678	ENSG00000214265	SNURF	-	SNRPN upstream reading frame	protein-coding
chr14.103988571.+	chr14	103988571	103988572	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	625	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr8.11312301.-	chr8	11312301	11312302	-	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	-11975	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr7.1542233.+	chr7	1542233	1542234	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1785	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr18.73357729.+	chr18	73357729	73357730	+	0	NA	Intergenic	L2|LINE|L2	-218140	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr18.49731972.+	chr18	49731972	49731973	+	0	NA	Intergenic	AluY|SINE|Alu	-134570	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr9.139119887.+	chr9	139119887	139119888	+	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	17800	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr17.4708688.-	chr17	4708688	4708689	-	0	NA	Intergenic	AluSp|SINE|Alu	1708	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr16.30810991.-	chr16	30810991	30810992	-	0	NA	Intergenic	AluSx|SINE|Alu	12468	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr5.89746549.+	chr5	89746549	89746550	+	0	NA	Intergenic	AluSz|SINE|Alu	24036	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr2.223163365.-	chr2	223163365	223163366	-	0	NA	"5' UTR (NM_181460, exon 1 of 9)"	"5' UTR (NM_181460, exon 1 of 9)"	-350	NM_181457	5077	Hs.42146	NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|WS1|WS3	paired box 3	protein-coding
chr2.47661270.+	chr2	47661270	47661271	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	31064	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr13.55001079.+	chr13	55001079	55001080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-114896	NR_031628	100302187		NR_031628		MIR1297	MIRN1297|hsa-mir-1297	microRNA 1297	miscRNA
chr17.4843271.+	chr17	4843271	4843272	+	0	NA	promoter-TSS (NM_015528)	promoter-TSS (NM_015528)	191	NM_003562	8402	Hs.184877	NM_001165417	ENSG00000108528	SLC25A11	OGC|SLC20A4	"solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11"	protein-coding
chr7.36403840.-	chr7	36403840	36403841	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2942	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr19.58125556.-	chr19	58125556	58125557	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	274	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr11.18743325.-	chr11	18743325	18743326	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4452	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr9.123743158.+	chr9	123743158	123743159	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51707	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr2.32738973.+	chr2	32738973	32738974	+	0	NA	"intron (NM_016252, intron 54 of 73)"	AluSg|SINE|Alu	-18247	NR_030285	693143		NR_030285		MIR558	MIRN558|hsa-mir-558	microRNA 558	miscRNA
chr22.30781345.+	chr22	30781345	30781346	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1957	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr15.20494048.+	chr15	20494048	20494049	+	0	NA	"intron (NR_038836, intron 4 of 5)"	AluSx|SINE|Alu	6051	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr8.60674677.-	chr8	60674677	60674678	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519277	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr14.54174627.-	chr14	54174627	54174628	-	0	NA	Intergenic	AluSp|SINE|Alu	-240575	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	miscRNA
chr3.72837177.-	chr3	72837177	72837178	-	0	NA	"intron (NM_018130, intron 10 of 10)"	SVA_B|Other|Other	-60421	NM_018130	55164	Hs.606584	NM_018130	ENSG00000144736	SHQ1	Shq1p	"SHQ1, H/ACA ribonucleoprotein assembly factor"	protein-coding
chr5.32689676.-	chr5	32689676	32689677	-	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	21067	NM_001204376	4883	Hs.619466	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
chr3.183052351.+	chr3	183052351	183052352	+	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	81319	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr1.45309063.+	chr1	45309063	45309064	+	0	NA	promoter-TSS (NM_001166292)	promoter-TSS (NM_001166292)	-447	NM_003738	8643	Hs.591497	NM_001166292	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
chr8.86544446.-	chr8	86544446	86544447	-	0	NA	Intergenic	AluSp|SINE|Alu	-23459	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr7.73448372.-	chr7	73448372	73448373	-	0	NA	"intron (NM_001081753, intron 1 of 30)"	"intron (NM_001081753, intron 1 of 30)"	-5945	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr10.60208078.+	chr10	60208078	60208079	+	0	NA	Intergenic	LTR12C|LTR|ERV1	63175	NM_001270782	7019	Hs.594250	NM_001270782	ENSG00000108064	TFAM	MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	"transcription factor A, mitochondrial"	protein-coding
chr21.45566065.-	chr21	45566065	45566066	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12571	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr18.77244840.-	chr18	77244840	77244841	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84514	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr16.9185056.-	chr16	9185056	9185057	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	481	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr1.200859940.+	chr1	200859940	200859941	+	0	NA	promoter-TSS (NM_018265)	promoter-TSS (NM_018265)	-687	NM_018265	55765	Hs.518997	NM_001142569	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
chr3.186441599.+	chr3	186441599	186441600	+	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	6501	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr6.150275485.+	chr6	150275485	150275486	+	0	NA	Intergenic	CpG	-9658	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr7.54826753.+	chr7	54826753	54826754	+	0	NA	"intron (NM_001012456, intron 1 of 3)"	CpG	186	NM_014302	23480	Hs.488282	NM_001012456	ENSG00000132432	SEC61G	SSS1	Sec61 gamma subunit	protein-coding
chrX.144902946.-	chrX	144902946	144902947	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-80	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr15.41674358.+	chr15	41674358	41674359	+	0	NA	Intergenic	SVA_F|Other|Other	20300	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr1.54966375.-	chr1	54966375	54966376	-	0	NA	Intergenic	AluSq|SINE|Alu	47432	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr3.95669711.-	chr3	95669711	95669712	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	267674	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr19.693373.+	chr19	693373	693374	+	0	NA	"intron (NM_214710, intron 2 of 4)"	"intron (NM_214710, intron 2 of 4)"	2088	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chrX.20094599.-	chrX	20094599	20094600	-	0	NA	"intron (NM_152780, intron 1 of 15)"	AluSq|SINE|Alu	-40157	NM_001168467	256714	Hs.127951	NM_001168465	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
chr6.49901489.-	chr6	49901489	49901490	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-15668	NM_001166478	403339	Hs.558270	NM_001166478	ENSG00000214643	DEFB133	-	"defensin, beta 133"	protein-coding
chr1.6132100.+	chr1	6132100	6132101	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25926	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr6.89130958.-	chr6	89130958	89130959	-	0	NA	Intergenic	LTR17|LTR|ERV1	255191	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chr5.172158995.+	chr5	172158995	172158996	+	0	NA	Intergenic	Intergenic	39208	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
chr19.49964863.+	chr19	49964863	49964864	+	0	NA	"intron (NM_001145396, intron 5 of 15)"	"intron (NM_001145396, intron 5 of 15)"	8390	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr15.80987308.+	chr15	80987308	80987309	+	0	NA	promoter-TSS (NM_021214)	promoter-TSS (NM_021214)	-344	NM_021214	58489	Hs.459072	NM_021214	ENSG00000136379	ABHD17C	FAM108C1	abhydrolase domain containing 17C	protein-coding
chr15.37172776.-	chr15	37172776	37172777	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5958	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr15.63892650.-	chr15	63892650	63892651	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-376	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr16.22879704.-	chr16	22879704	22879705	-	0	NA	"intron (NM_006043, intron 1 of 1)"	AluSc|SINE|Alu	-53844	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr6.158402898.-	chr6	158402898	158402899	-	0	NA	promoter-TSS (NM_003898)	promoter-TSS (NM_003898)	-10	NM_003898	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr18.13095623.+	chr18	13095623	13095624	+	0	NA	"exon (NM_032142, exon 35 of 45)"	"exon (NM_032142, exon 35 of 45)"	104262	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr14.102109464.-	chr14	102109464	102109465	-	0	NA	Intergenic	AluY|SINE|Alu	-81776	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr13.112597803.-	chr13	112597803	112597804	-	0	NA	Intergenic	MIRc|SINE|MIR	124110	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr16.726871.-	chr16	726871	726872	-	0	NA	"exon (NM_003961, exon 2 of 7)"	"exon (NM_003961, exon 2 of 7)"	-796	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr19.6307830.+	chr19	6307830	6307831	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25810	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr20.33062701.-	chr20	33062701	33062702	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8571	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chrX.103014813.+	chrX	103014813	103014814	+	0	NA	Intergenic	AluY|SINE|Alu	-16626	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr8.42888224.+	chr8	42888224	42888225	+	0	NA	Intergenic	SVA_D|Other|Other	-23218	NR_033698	2339	Hs.370312	NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	"farnesyltransferase, CAAX box, alpha"	protein-coding
chr17.1226114.+	chr17	1226114	1226115	+	0	NA	Intergenic	AluSx|SINE|Alu	43157	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr7.73638999.+	chr7	73638999	73639000	+	0	NA	"exon (NM_014146, exon 12 of 13)"	"exon (NM_014146, exon 12 of 13)"	14912	NM_032464	7462	Hs.741249	NM_014146	ENSG00000086730	LAT2	LAB|NTAL|WBSCR15|WBSCR5|WSCR5	"linker for activation of T cells family, member 2"	protein-coding
chr11.47951832.-	chr11	47951832	47951833	-	0	NA	Intergenic	AluSz|SINE|Alu	50278	NM_001098503	5795	Hs.318547	NM_001098503	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	"protein tyrosine phosphatase, receptor type, J"	protein-coding
chr1.97799186.-	chr1	97799186	97799187	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237707	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr16.81069533.+	chr16	81069533	81069534	+	0	NA	promoter-TSS (NM_015251)	promoter-TSS (NM_015251)	75	NM_015251	23300	Hs.589959	NM_015251	ENSG00000166454	ATMIN	ASCIZ|ZNF822	ATM interactor	protein-coding
chr2.62740952.-	chr2	62740952	62740953	-	0	NA	Intergenic	AluY|SINE|Alu	7348	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr1.113336835.-	chr1	113336835	113336836	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73646	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr2.15359960.-	chr2	15359960	15359961	-	0	NA	"intron (NM_015909, intron 47 of 51)"	SVA_E|Other|Other	-341512	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
chr19.50354814.-	chr19	50354814	50354815	-	0	NA	"intron (NM_017432, intron 1 of 11)"	CpG	-119	NR_040037	100506033	Hs.654814	NR_040037	ENSG00000268006	PTOV1-AS1	-	PTOV1 antisense RNA 1	miscRNA
chr6.128901709.-	chr6	128901709	128901710	-	0	NA	Intergenic	CpG	59839	NM_001135648	5796	Hs.155919	NM_001135648	ENSG00000152894	PTPRK	R-PTP-kappa	"protein tyrosine phosphatase, receptor type, K"	protein-coding
chr17.42869154.-	chr17	42869154	42869155	-	0	NA	Intergenic	AluY|SINE|Alu	-32586	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr3.9398151.+	chr3	9398151	9398152	+	0	NA	Intergenic	AluY|SINE|Alu	-6566	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr20.46019530.+	chr20	46019530	46019531	+	0	NA	Intergenic	AluY|SINE|Alu	-34056	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr19.38836202.-	chr19	38836202	38836203	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9759	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr4.55034941.+	chr4	55034941	55034942	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60323	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr2.21266583.-	chr2	21266583	21266584	-	0	NA	"intron (NM_000384, intron 1 of 28)"	"intron (NM_000384, intron 1 of 28)"	-362	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr12.34192008.+	chr12	34192008	34192009	+	0	NA	Intergenic	AluSp|SINE|Alu	16792	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr20.17990723.-	chr20	17990723	17990724	-	0	NA	Intergenic	SVA_D|Other|Other	-40961	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr3.164119687.+	chr3	164119687	164119688	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676596	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr16.4065727.-	chr16	4065727	4065728	-	0	NA	"intron (NM_001116, intron 2 of 10)"	AluSx1|SINE|Alu	-100459	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr1.25524826.+	chr1	25524826	25524827	+	0	NA	Intergenic	Intergenic	34187	NM_015484	25949	Hs.20013	NM_015484		SYF2	CBPIN|NTC31|P29|fSAP29	"SYF2 homolog, RNA splicing factor (S. cerevisiae)"	protein-coding
chr20.17687845.+	chr20	17687845	17687846	+	0	NA	"intron (NM_001014977, intron 1 of 2)"	AluY|SINE|Alu	7252	NM_001014977	140836	Hs.115366	NM_001014977	ENSG00000125888	BANF2	BAF-L|BAF2|BAFL|C20orf179	barrier to autointegration factor 2	protein-coding
chr19.35531906.-	chr19	35531906	35531907	-	0	NA	TTS (NM_001037)	TTS (NM_001037)	-496	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr9.21968287.-	chr9	21968287	21968288	-	0	NA	TTS (NR_024274)	TTS (NR_024274)	-1149	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr10.133869256.+	chr10	133869256	133869257	+	0	NA	Intergenic	Intergenic	-49057	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chrY.9930612.+	chrY	9930612	9930613	+	0	NA	Intergenic	CpG	182205	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr7.2943527.+	chr7	2943527	2943528	+	0	NA	Intergenic	Intergenic	-59568	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr2.207270720.+	chr2	207270720	207270721	+	0	NA	Intergenic	AluY|SINE|Alu	-37648	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr3.8635287.+	chr3	8635287	8635288	+	0	NA	Intergenic	Intergenic	21819	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr10.123828889.-	chr10	123828889	123828890	-	0	NA	"intron (NM_206861, intron 3 of 19)"	AluY|SINE|Alu	-80200	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr2.109985560.-	chr2	109985560	109985561	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55479	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr11.39545602.+	chr11	39545602	39545603	+	0	NA	Intergenic	AluY|SINE|Alu	769078	NR_047674	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr5.612770.+	chr5	612770	612771	+	0	NA	"intron (NM_018140, intron 1 of 11)"	CpG	365	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72kDa	protein-coding
chr11.68671208.+	chr11	68671208	68671209	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	95	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr9.131215405.-	chr9	131215405	131215406	-	0	NA	Intergenic	AluSx1|SINE|Alu	2029	NM_153436	4957	Hs.129055	NM_001242352	ENSG00000136811	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
chr20.33005271.+	chr20	33005271	33005272	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48859	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr9.10974650.-	chr9	10974650	10974651	-	0	NA	Intergenic	L1PBa|LINE|L1	361927	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.172379816.+	chr2	172379816	172379817	+	0	NA	"intron (NM_001127383, intron 1 of 2)"	CpG	950	NM_001127383	79901	Hs.221941	NM_001127383	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
chr16.89034095.+	chr16	89034095	89034096	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9409	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.30248612.-	chr2	30248612	30248613	-	0	NA	Intergenic	AluY|SINE|Alu	104135	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr13.33774991.+	chr13	33774991	33774992	+	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	5196	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr9.72101714.-	chr9	72101714	72101715	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157473	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr1.27293946.+	chr1	27293946	27293947	+	0	NA	Intergenic	AluSx|SINE|Alu	-7045	NM_152365	126695	Hs.188881	NM_152365	ENSG00000175707	C1orf172	RP11-344H11.3	chromosome 1 open reading frame 172	protein-coding
chr13.19173928.+	chr13	19173928	19173929	+	0	NA	Intergenic	CpG	272181	NR_027995	284232	Hs.742626	NR_027995		ANKRD20A9P	-	"ankyrin repeat domain 20 family, member A9, pseudogene"	pseudo
chr16.18931522.-	chr16	18931522	18931523	-	0	NA	"intron (NM_015092, intron 1 of 62)"	AluSq2|SINE|Alu	-6204	NM_015092	23049	Hs.460179	NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	"smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)"	protein-coding
chr9.100747315.-	chr9	100747315	100747316	-	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	-1826	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr1.62912674.+	chr1	62912674	62912675	+	0	NA	"intron (NM_001017415, intron 6 of 8)"	AluSp|SINE|Alu	10291	NM_003368	7398	Hs.35086	NM_001017415	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
chr8.3501053.+	chr8	3501053	3501054	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351275	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr16.544869.-	chr16	544869	544870	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20019	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr3.52918412.+	chr3	52918412	52918413	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13185	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr19.45331134.+	chr19	45331134	45331135	+	0	NA	Intergenic	AluY|SINE|Alu	-18259	NM_002856	5819	Hs.655455	NM_001042724	ENSG00000130202	PVRL2	CD112|HVEB|PRR2|PVRR2	poliovirus receptor-related 2 (herpesvirus entry mediator B)	protein-coding
chrX.70493588.+	chrX	70493588	70493589	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9454	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr8.91013870.+	chr8	91013870	91013871	+	0	NA	"intron (NM_001359, intron 1 of 9)"	CpG	290	NM_001359	1666	Hs.492212	NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	"2,4-dienoyl CoA reductase 1, mitochondrial"	protein-coding
chr14.24785828.-	chr14	24785828	24785829	-	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	-3515	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr2.3827478.-	chr2	3827478	3827479	-	0	NA	Intergenic	Intergenic	-121692	NM_018436	55821	Hs.97899	NM_199232	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
chr5.180198331.-	chr5	180198331	180198332	-	0	NA	Intergenic	SVA_D|Other|Other	31273	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr22.44763612.-	chr22	44763612	44763613	-	0	NA	Intergenic	Intergenic	54881	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
chr19.3190806.+	chr19	3190806	3190807	+	0	NA	"intron (NM_020170, intron 1 of 14)"	"intron (NM_020170, intron 1 of 14)"	4931	NM_020170	56926	Hs.657032	NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
chr5.79863366.-	chr5	79863366	79863367	-	0	NA	"intron (NM_001004441, intron 2 of 4)"	AluSq|SINE|Alu	-2938	NM_001004441	340120	Hs.519404	NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
chr13.112597816.-	chr13	112597816	112597817	-	0	NA	Intergenic	MIRc|SINE|MIR	124097	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr10.122148856.+	chr10	122148856	122148857	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67610	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr2.81982182.+	chr2	81982182	81982183	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101745	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr16.30961000.-	chr16	30961000	30961001	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-595	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr7.5355963.+	chr7	5355963	5355964	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33402	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr3.195498043.+	chr3	195498043	195498044	+	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	40801	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr10.134785472.+	chr10	134785472	134785473	+	0	NA	"non-coding (NR_046231, exon 2 of 3)"	"non-coding (NR_046231, exon 2 of 3)"	6434	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LOC399829	-	uncharacterized LOC399829	miscRNA
chr20.62108084.+	chr20	62108084	62108085	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4091	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr17.4708702.+	chr17	4708702	4708703	+	0	NA	Intergenic	AluSp|SINE|Alu	-1694	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr16.1123339.+	chr16	1123339	1123340	+	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	583	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr21.38593453.-	chr21	38593453	38593454	-	0	NA	"non-coding (NR_026719, exon 3 of 3)"	"non-coding (NR_026719, exon 3 of 3)"	-12649	NR_026719	257203	Hs.505159	NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region gene 9 (non-protein coding)	miscRNA
chr17.67639050.+	chr17	67639050	67639051	+	0	NA	Intergenic	AluY|SINE|Alu	228212	NM_002758	5608	Hs.463978	NM_002758		MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chr10.44870306.+	chr10	44870306	44870307	+	0	NA	"intron (NM_000609, intron 3 of 3)"	"intron (NM_000609, intron 3 of 3)"	10239	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr10.104209709.-	chr10	104209709	104209710	-	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	-135	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr16.75112397.+	chr16	75112397	75112398	+	0	NA	"intron (NM_032268, intron 1 of 4)"	AluSx|SINE|Alu	38273	NM_194436	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
chr11.777222.+	chr11	777222	777223	+	0	NA	"intron (NM_182612, intron 1 of 7)"	CpG	265	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr7.128142011.-	chr7	128142011	128142012	-	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	-25228	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr5.91967011.+	chr5	91967011	91967012	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939488	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr7.12736914.+	chr7	12736914	12736915	+	0	NA	Intergenic	AluSg|SINE|Alu	10003	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr6.123144196.-	chr6	123144196	123144197	-	0	NA	Intergenic	AluY|SINE|Alu	-34225	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr8.6644889.-	chr8	6644889	6644890	-	0	NA	Intergenic	AluY|SINE|Alu	42128	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr5.154071094.+	chr5	154071094	154071095	+	0	NA	Intergenic	Intergenic	-21368	NM_015315	23367	Hs.292078	NM_033551	ENSG00000155506	LARP1	LARP	"La ribonucleoprotein domain family, member 1"	protein-coding
chr2.25758516.-	chr2	25758516	25758517	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114575	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr7.77452596.+	chr7	77452596	77452597	+	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	-16851	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr11.100596540.-	chr11	100596540	100596541	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38133	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr4.26862485.-	chr4	26862485	26862486	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-172	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr6.1035139.+	chr6	1035139	1035140	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66428	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chrX.99979200.+	chrX	99979200	99979201	+	0	NA	"intron (NM_080737, intron 1 of 18)"	SVA_D|Other|Other	7322	NM_080737	94121	Hs.592224	NM_001129896	ENSG00000102362	SYTL4	SLP4	synaptotagmin-like 4	protein-coding
chr13.111285564.-	chr13	111285564	111285565	-	0	NA	"intron (NR_040103, intron 5 of 9)"	LTR12C|LTR|ERV1	-17633	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr6.168209540.-	chr6	168209540	168209541	-	0	NA	Intergenic	AluSq|SINE|Alu	12001	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr2.35387164.-	chr2	35387164	35387165	-	0	NA	Intergenic	AluY|SINE|Alu	-1195549	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr16.33293944.-	chr16	33293944	33293945	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4758	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr1.183670835.-	chr1	183670835	183670836	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48387	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr5.3188281.+	chr5	3188281	3188282	+	0	NA	Intergenic	CpG	347927	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr10.81146773.-	chr10	81146773	81146774	-	0	NA	"intron (NM_153367, intron 3 of 3)"	"intron (NM_153367, intron 3 of 3)"	-39553	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr22.18249557.+	chr22	18249557	18249558	+	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	-2532	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr2.128432640.+	chr2	128432640	128432641	+	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	124	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr4.180789204.-	chr4	180789204	180789205	-	0	NA	Intergenic	AluY|SINE|Alu	-1291098	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	miscRNA
chr13.20343679.+	chr13	20343679	20343680	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13480	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr17.81083457.+	chr17	81083457	81083458	+	0	NA	Intergenic	CpG	45890	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr6.1604602.-	chr6	1604602	1604603	-	0	NA	Intergenic	Intergenic	6079	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr14.23517068.-	chr14	23517068	23517069	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5692	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr5.39649159.+	chr5	39649159	39649160	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223824	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr22.17444536.+	chr22	17444536	17444537	+	0	NA	"intron (NM_001037814, intron 9 of 9)"	"intron (NM_001037814, intron 9 of 9)"	44576	NM_001037814	128954	Hs.434113	NM_001037814	ENSG00000215568	GAB4	-	"GRB2-associated binding protein family, member 4"	protein-coding
chr8.67717492.+	chr8	67717492	67717493	+	0	NA	"intron (NM_013257, intron 4 of 16)"	AluSc8|SINE|Alu	30076	NM_170709	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr1.205072089.-	chr1	205072089	205072090	-	0	NA	"intron (NM_001193273, intron 5 of 13)"	AluSp|SINE|Alu	18501	NM_203376	388730	Hs.146928	NM_203376	ENSG00000174529	TMEM81	HC3107|KVLA2788|UNQ2788	transmembrane protein 81	protein-coding
chrM.9826.-	chrM	9826	9827	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.234831419.-	chr1	234831419	234831420	-	0	NA	Intergenic	Intergenic	28370	NR_038856	100506810	Hs.586634	NR_038856		LOC100506810	-	uncharacterized LOC100506810	miscRNA
chr19.933466.+	chr19	933466	933467	+	0	NA	"intron (NM_005224, intron 3 of 8)"	"intron (NM_005224, intron 3 of 8)"	7429	NM_005224	1820	Hs.501296	NM_005224		ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding
chr3.36494761.+	chr3	36494761	36494762	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72664	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr21.42190108.+	chr21	42190108	42190109	+	0	NA	"intron (NM_001389, intron 1 of 32)"	"intron (NM_001389, intron 1 of 32)"	28931	NM_001389	1826	Hs.397800	NM_001271534	ENSG00000171587	DSCAM	CHD2-42|CHD2-52	Down syndrome cell adhesion molecule	protein-coding
chr2.81982163.+	chr2	81982163	81982164	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101764	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr2.129354747.-	chr2	129354747	129354748	-	0	NA	Intergenic	Intergenic	278576	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr4.148516436.-	chr4	148516436	148516437	-	0	NA	Intergenic	AluY|SINE|Alu	22103	NM_018241	55751	Hs.203896	NM_018241		TMEM184C	TMEM34	transmembrane protein 184C	protein-coding
chr2.101245794.+	chr2	101245794	101245795	+	0	NA	Intergenic	Intergenic	66376	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr13.112726535.-	chr13	112726535	112726536	-	0	NA	TTS (NM_005986)	TTS (NM_005986)	-4622	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr7.73568083.-	chr7	73568083	73568084	-	0	NA	Intergenic	AluSq|SINE|Alu	20623	NM_031992	7458	Hs.520943	NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
chr11.34295463.+	chr11	34295463	34295464	+	0	NA	"intron (NM_145804, intron 1 of 16)"	AluYb8|SINE|Alu	84092	NM_145804	25841	Hs.23361	NM_145804	ENSG00000166016	ABTB2	BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
chr14.76127592.+	chr14	76127592	76127593	+	0	NA	promoter-TSS (NM_015072)	promoter-TSS (NM_015072)	41	NM_015072	23093	Hs.709609	NM_015072	ENSG00000119685	TTLL5	KIAA0998|STAMP	"tubulin tyrosine ligase-like family, member 5"	protein-coding
chr8.91013872.-	chr8	91013872	91013873	-	0	NA	"intron (NM_001359, intron 1 of 9)"	CpG	-292	NM_001359	1666	Hs.492212	NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	"2,4-dienoyl CoA reductase 1, mitochondrial"	protein-coding
chr2.239058236.-	chr2	239058236	239058237	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10873	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr11.64120593.+	chr11	64120593	64120594	+	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	-6032	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr2.58008304.+	chr2	58008304	58008305	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265473	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr9.35728478.+	chr9	35728478	35728479	+	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	-3839	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr14.95067792.-	chr14	95067792	95067793	-	0	NA	Intergenic	AluY|SINE|Alu	10922	NM_001085	12	Hs.710488	NM_001085	ENSG00000196136	SERPINA3	AACT|ACT|GIG25	"serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3"	protein-coding
chr10.125955484.-	chr10	125955484	125955485	-	0	NA	Intergenic	LTR16E1|LTR|ERVL	102361	NM_001270764	51363	Hs.731394	NM_001270764	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST|RP11-47G11.1	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
chr14.101016733.+	chr14	101016733	101016734	+	0	NA	"intron (NM_020836, intron 2 of 6)"	"intron (NM_020836, intron 2 of 6)"	17674	NM_001159531	57596	Hs.211751	NM_001159531	ENSG00000183092	BEGAIN	-	brain-enriched guanylate kinase-associated	protein-coding
chr20.34266475.-	chr20	34266475	34266476	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13597	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr2.10127198.-	chr2	10127198	10127199	-	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSz6|SINE|Alu	-35406	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr6.150413253.-	chr6	150413253	150413254	-	0	NA	Intergenic	AluY|SINE|Alu	23051	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr21.47403490.+	chr21	47403490	47403491	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1827	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr7.22396716.+	chr7	22396716	22396717	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-183	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr11.394844.+	chr11	394844	394845	+	0	NA	"intron (NM_007183, intron 1 of 12)"	"intron (NM_007183, intron 1 of 12)"	627	NM_007183	11187	Hs.534395	NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
chr20.32680397.-	chr20	32680397	32680398	-	0	NA	"intron (NM_003908, intron 7 of 8)"	AluY|SINE|Alu	-19688	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr16.57898557.+	chr16	57898557	57898558	+	0	NA	Intergenic	AluSg|SINE|Alu	-62118	NM_005550	3801	Hs.23131	NM_001130099	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
chr18.63211110.-	chr18	63211110	63211111	-	0	NA	Intergenic	AluY|SINE|Alu	206378	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr22.49833025.+	chr22	49833025	49833026	+	0	NA	Intergenic	AluSx|SINE|Alu	218165	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr6.8064655.-	chr6	8064655	8064656	-	0	NA	promoter-TSS (NM_001199322)	promoter-TSS (NM_001199322)	8	NM_001199323	63915	Hs.719272	NM_001199322	ENSG00000188428	BLOC1S5	MU|MUTED	"biogenesis of lysosomal organelles complex-1, subunit 5, muted"	protein-coding
chr2.19132829.-	chr2	19132829	19132830	-	0	NA	Intergenic	AluYk4|SINE|Alu	361983	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr3.127175506.-	chr3	127175506	127175507	-	0	NA	Intergenic	Intergenic	-134096	NM_001136053	131601	Hs.6418	NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	"transmembrane protein, adipocyte asscociated 1"	protein-coding
chr11.820025.+	chr11	820025	820026	+	0	NA	"intron (NM_020376, intron 2 of 9)"	CpG-3673	1124	NM_020376	57104	Hs.654697	XM_003403858	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin-like phospholipase domain containing 2	protein-coding
chrX.132930128.+	chrX	132930128	132930129	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189545	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr4.190662183.+	chr4	190662183	190662184	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199791	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr6.12012464.+	chr6	12012464	12012465	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-260	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr20.62479302.-	chr20	62479302	62479303	-	0	NA	Intergenic	Intergenic	13264	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chrX.18849848.-	chrX	18849848	18849849	-	0	NA	Intergenic	AluY|SINE|Alu	58566	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr4.166248531.+	chr4	166248531	166248532	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-287	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr19.45324447.+	chr19	45324447	45324448	+	0	NA	"3' UTR (NM_005581, exon 15 of 15)"	"3' UTR (NM_005581, exon 15 of 15)"	12131	NM_001013257	4059	Hs.625725	NM_001013257	ENSG00000187244	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
chr6.167600169.-	chr6	167600169	167600170	-	0	NA	Intergenic	Intergenic	-16088	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr19.644316.+	chr19	644316	644317	+	0	NA	TTS (NM_020637)	TTS (NM_020637)	4390	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr4.26862279.-	chr4	26862279	26862280	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	34	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr7.56439595.+	chr7	56439595	56439596	+	0	NA	Intergenic	Intergenic	76473	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr2.25758515.-	chr2	25758515	25758516	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114576	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr1.201140003.-	chr1	201140003	201140004	-	0	NA	Intergenic	CpG	16371	NM_016456	252839	Hs.181444	NM_016456	ENSG00000116857	TMEM9	TMEM9A	transmembrane protein 9	protein-coding
chr18.77244887.-	chr18	77244887	77244888	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84561	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr17.57868979.+	chr17	57868979	57868980	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49648	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr22.51126405.-	chr22	51126405	51126406	-	0	NA	"intron (NM_033517, intron 9 of 21)"	"intron (NM_033517, intron 9 of 21)"	-13335	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr11.3224515.+	chr11	3224515	3224516	+	0	NA	Intergenic	Intergenic	-15047	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr19.7463481.+	chr19	7463481	7463482	+	0	NA	"intron (NM_015318, intron 1 of 20)"	AluSg|SINE|Alu	3482	NM_015318	23370	Hs.736818	NM_001130955	ENSG00000104880	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
chr15.30643912.+	chr15	30643912	30643913	+	0	NA	Intergenic	AluSx1|SINE|Alu	41952	NM_148911	89832	Hs.510853	NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10	"CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion"	protein-coding
chr1.8224516.+	chr1	8224516	8224517	+	0	NA	Intergenic	AluY|SINE|Alu	-138123	NM_018948	54206	Hs.605445	NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
chr11.64510493.-	chr11	64510493	64510494	-	0	NA	"intron (NM_153819, intron 1 of 16)"	CpG-4298	-1137	NM_001098671	10235	Hs.99491	NM_001098670	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2 (calcium and DAG-regulated)	protein-coding
chr8.42888211.-	chr8	42888211	42888212	-	0	NA	Intergenic	SVA_D|Other|Other	23231	NR_033698	2339	Hs.370312	NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	"farnesyltransferase, CAAX box, alpha"	protein-coding
chr1.40260000.-	chr1	40260000	40260001	-	0	NA	Intergenic	AluY|SINE|Alu	5467	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr1.5005208.+	chr1	5005208	5005209	+	0	NA	Intergenic	Intergenic	290103	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr19.36426479.+	chr19	36426479	36426480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1543	NM_024509	79414	Hs.143792	NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
chr14.90564823.+	chr14	90564823	90564824	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSc8|SINE|Alu	36715	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr3.125174731.-	chr3	125174731	125174732	-	0	NA	"intron (NR_073435, intron 10 of 12)"	AluY|SINE|Alu	-64327	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr19.58125542.-	chr19	58125542	58125543	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	288	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr5.18111538.-	chr5	18111538	18111539	-	0	NA	Intergenic	AluY|SINE|Alu	724119	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr12.85306250.+	chr12	85306250	85306251	+	0	NA	"intron (NM_018057, intron 1 of 4)"	"intron (NM_018057, intron 1 of 4)"	358	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr19.38836221.+	chr19	38836221	38836222	+	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	9778	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr5.149083092.-	chr5	149083092	149083093	-	0	NA	Intergenic	Intergenic	26723	NM_001172698	133522	Hs.483816	NM_001172698	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	"peroxisome proliferator-activated receptor gamma, coactivator 1 beta"	protein-coding
chr10.59351303.+	chr10	59351303	59351304	+	0	NA	Intergenic	AluY|SINE|Alu	-286984	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr2.90482964.+	chr2	90482964	90482965	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365011	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr9.131293129.+	chr9	131293129	131293130	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21708	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr3.128161120.-	chr3	128161120	128161121	-	0	NA	Intergenic	Intergenic	21317	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr16.51183913.-	chr16	51183913	51183914	-	0	NA	"intron (NM_002968, intron 1 of 2)"	CpG	-595	NM_001127892	6299	Hs.135787	NM_001127892	ENSG00000103449	SALL1	HSAL1|Sal-1|TBS|ZNF794	sal-like 1 (Drosophila)	protein-coding
chr8.107670081.+	chr8	107670081	107670082	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	45	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr15.52311981.-	chr15	52311981	52311982	-	0	NA	"intron (NM_002748, intron 1 of 5)"	CpG	-570	NM_002748	5597	Hs.411847	NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
chr7.5257661.-	chr7	5257661	5257662	-	0	NA	"intron (NM_001033519, intron 6 of 11)"	"intron (NM_001033519, intron 6 of 11)"	-3761	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr15.41539529.+	chr15	41539529	41539530	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16092	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr21.47838761.-	chr21	47838761	47838762	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40101	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr2.1554751.-	chr2	1554751	1554752	-	0	NA	Intergenic	Intergenic	-136571	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chrX.12751740.+	chrX	12751740	12751741	+	0	NA	Intergenic	AluY|SINE|Alu	-57734	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr2.157272364.+	chr2	157272364	157272365	+	0	NA	Intergenic	AluSp|SINE|Alu	-19601	NM_001083112	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
chr3.155523826.-	chr3	155523826	155523827	-	0	NA	"intron (NM_173657, intron 1 of 5)"	CpG	-229	NM_173657	285315	Hs.350846	NM_173657	ENSG00000174928	C3orf33	AC3-33	chromosome 3 open reading frame 33	protein-coding
chr14.64299469.+	chr14	64299469	64299470	+	0	NA	Intergenic	AluJb|SINE|Alu	-20214	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr8.74207223.-	chr8	74207223	74207224	-	0	NA	"5' UTR (NM_172037, exon 1 of 6)"	"5' UTR (NM_172037, exon 1 of 6)"	-386	NM_172037	157506	Hs.244940	NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10 (all-trans)	protein-coding
chr18.19632301.+	chr18	19632301	19632302	+	0	NA	Intergenic	AluSg4|SINE|Alu	-117103	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr7.5257599.-	chr7	5257599	5257600	-	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	-3699	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr5.69056925.-	chr5	69056925	69056926	-	0	NA	Intergenic	AluYa5|SINE|Alu	50653	NR_027386	653188	Hs.654588	NR_027386	ENSG00000253203	GUSBP3	-	"glucuronidase, beta pseudogene 3"	pseudo
chr3.127403971.+	chr3	127403971	127403972	+	0	NA	Intergenic	Intergenic	12190	NR_033429	80325	Hs.107812	NM_032548	ENSG00000114626	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding
chr22.19749182.-	chr22	19749182	19749183	-	0	NA	"intron (NM_080646, intron 3 of 8)"	CpG	-4956	NM_005992	6899	Hs.173984	NM_005992	ENSG00000184058	TBX1	CAFS|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCFS	T-box 1	protein-coding
chr19.35368086.-	chr19	35368086	35368087	-	0	NA	Intergenic	AluY|SINE|Alu	-21761	NR_046222	100652909	Hs.374015	NR_046222		LOC100652909	-	uncharacterized LOC100652909	miscRNA
chr2.43595133.-	chr2	43595133	43595134	-	0	NA	"intron (NM_022065, intron 29 of 37)"	AluSc8|SINE|Alu	-140783	NR_027251	100129726	Hs.194480	NM_178529		LOC100129726	-	uncharacterized LOC100129726	miscRNA
chr1.51444011.-	chr1	51444011	51444012	-	0	NA	Intergenic	CpG	-8369	NM_078626	1031	Hs.525324	NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	"cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)"	protein-coding
chr5.172599817.-	chr5	172599817	172599818	-	0	NA	Intergenic	AluSc8|SINE|Alu	-28372	NM_013979	662	Hs.145726	NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2/adenovirus E1B 19kDa interacting protein 1	protein-coding
chr4.153051004.+	chr4	153051004	153051005	+	0	NA	Intergenic	AluY|SINE|Alu	223106	NM_018315	55294	Hs.717081	NM_001013415	ENSG00000109670	FBXW7	AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	"F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase"	protein-coding
chr7.63582795.-	chr7	63582795	63582796	-	0	NA	Intergenic	AluJo|SINE|Alu	-76974	NM_001159522	442319	Hs.640774	NM_001159522	ENSG00000257482	ZNF727	-	zinc finger protein 727	protein-coding
chrX.9363358.+	chrX	9363358	9363359	+	0	NA	Intergenic	Intergenic	-67977	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr2.92172339.+	chr2	92172339	92172340	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43180	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr2.211170523.+	chr2	211170523	211170524	+	0	NA	"intron (NM_079420, intron 1 of 6)"	AluSp|SINE|Alu	-2184	NM_079422	4632	Hs.187338	NM_079420	ENSG00000168530	MYL1	MLC1F|MLC3F	"myosin, light chain 1, alkali; skeletal, fast"	protein-coding
chr9.6807784.-	chr9	6807784	6807785	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50143	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr19.15415041.+	chr19	15415041	15415042	+	0	NA	Intergenic	Intergenic	-23779	NM_058243	23476	Hs.187763	NM_014299	ENSG00000141867	BRD4	CAP|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
chr7.99699475.+	chr7	99699475	99699476	+	0	NA	promoter-TSS (NM_005916)	promoter-TSS (NM_005916)	-48	NM_005916	4176	Hs.438720	NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146	minichromosome maintenance complex component 7	protein-coding
chrX.47441872.-	chrX	47441872	47441873	-	0	NA	"5' UTR (NM_003254, exon 1 of 6)"	"5' UTR (NM_003254, exon 1 of 6)"	-182	NM_003254	7076	Hs.522632	NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP	TIMP metallopeptidase inhibitor 1	protein-coding
chr5.1882816.-	chr5	1882816	1882817	-	0	NA	promoter-TSS (NM_016358)	promoter-TSS (NM_016358)	-64	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr11.133763859.+	chr11	133763859	133763860	+	0	NA	Intergenic	AluY|SINE|Alu	4617	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr1.40330238.+	chr1	40330238	40330239	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18939	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr2.92172368.+	chr2	92172368	92172369	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43209	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr3.102973943.-	chr3	102973943	102973944	-	0	NA	Intergenic	SVA_D|Other|Other	-820084	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr6.21897071.+	chr6	21897071	21897072	+	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	230396	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chrX.53111623.+	chrX	53111623	53111624	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	81	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr4.96097950.+	chr4	96097950	96097951	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85308	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr7.130728537.-	chr7	130728537	130728538	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	-63252	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr17.4183962.+	chr17	4183962	4183963	+	0	NA	"intron (NM_003342, intron 5 of 5)"	AluSx3|SINE|Alu	-16688	NM_016376	51479	Hs.696087	NM_001257999	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
chr12.131127775.+	chr12	131127775	131127776	+	0	NA	Intergenic	Intergenic	-125365	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr22.18251504.-	chr22	18251504	18251505	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4479	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr2.85554152.+	chr2	85554152	85554153	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1267	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr16.18931521.-	chr16	18931521	18931522	-	0	NA	"intron (NM_015092, intron 1 of 62)"	AluSq2|SINE|Alu	-6205	NM_015092	23049	Hs.460179	NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	"smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)"	protein-coding
chr16.31932471.-	chr16	31932471	31932472	-	0	NA	Intergenic	AluY|SINE|Alu	-47392	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr12.15942513.+	chr12	15942513	15942514	+	0	NA	promoter-TSS (NM_004447)	promoter-TSS (NM_004447)	-3	NM_004447	2059	Hs.591160	NM_004447	ENSG00000151491	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
chr7.100044653.+	chr7	100044653	100044654	+	0	NA	Intergenic	AluY|SINE|Alu	-10559	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr7.155246422.+	chr7	155246422	155246423	+	0	NA	Intergenic	CpG	-4402	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr14.105618891.-	chr14	105618891	105618892	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16270	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr4.37548424.+	chr4	37548424	37548425	+	0	NA	"intron (NM_001104629, intron 1 of 3)"	HERVE_a-int|LTR|ERV1	-37431	NM_018302	55286	Hs.107527	NM_001104629		C4orf19	-	chromosome 4 open reading frame 19	protein-coding
chr21.37627683.-	chr21	37627683	37627684	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64804	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr15.50998363.-	chr15	50998363	50998364	-	0	NA	Intergenic	AluYa8|SINE|Alu	19351	NM_017672	54822	Hs.512894	NM_017672		TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK	"transient receptor potential cation channel, subfamily M, member 7"	protein-coding
chr8.145241987.-	chr8	145241987	145241988	-	0	NA	"intron (NM_001099280, intron 7 of 12)"	AluSx|SINE|Alu	-39068	NM_001099280	727957	Hs.443139	NM_001099280	ENSG00000179832	MROH1	HEATR7A	maestro heat-like repeat family member 1	protein-coding
chr4.103422392.+	chr4	103422392	103422393	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-94	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr10.135031524.-	chr10	135031524	135031525	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12254	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr12.53472918.+	chr12	53472918	53472919	+	0	NA	"intron (NM_032840, intron 1 of 10)"	CpG	286	NM_032840	84926	Hs.343334	NM_032840	ENSG00000167778	SPRYD3	-	SPRY domain containing 3	protein-coding
chr7.158314907.+	chr7	158314907	158314908	+	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	10598	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr20.34266381.+	chr20	34266381	34266382	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13503	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr4.4041403.-	chr4	4041403	4041404	-	0	NA	Intergenic	AluYb9|SINE|Alu	84255	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr4.95482026.-	chr4	95482026	95482027	-	0	NA	"intron (NM_001256427, intron 3 of 14)"	AluY|SINE|Alu	-109018	NM_001011515	10611	Hs.732677	NM_001011513	ENSG00000163110	PDLIM5	ENH|ENH1|LIM	PDZ and LIM domain 5	protein-coding
chr1.110881137.-	chr1	110881137	110881138	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-656	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr11.3224497.+	chr11	3224497	3224498	+	0	NA	Intergenic	Intergenic	-15065	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr2.9551707.+	chr2	9551707	9551708	+	0	NA	"intron (NM_022334, intron 4 of 5)"	AluSx3|SINE|Alu	11936	NM_004763	9270	Hs.467662	NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
chr10.135075440.-	chr10	135075440	135075441	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14316	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr1.6009862.+	chr1	6009862	6009863	+	0	NA	"intron (NM_015102, intron 7 of 29)"	"intron (NM_015102, intron 7 of 29)"	-42496	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr21.45684315.+	chr21	45684315	45684316	+	0	NA	Intergenic	AluY|SINE|Alu	-2216	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr18.48115835.-	chr18	48115835	48115836	-	0	NA	"intron (NM_002747, intron 1 of 5)"	AluY|SINE|Alu	-29351	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr21.45243623.+	chr21	45243623	45243624	+	0	NA	Intergenic	Intergenic	-11175	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chrX.133328800.-	chrX	133328800	133328801	-	0	NA	Intergenic	AluSg|SINE|Alu	24492	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr17.80036908.-	chr17	80036908	80036909	-	0	NA	"3' UTR (NM_004104, exon 43 of 43)"	"3' UTR (NM_004104, exon 43 of 43)"	13211	NM_022156	64118	Hs.741994	NM_022156		DUS1L	DUS1|PP3111	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding
chr12.133366777.+	chr12	133366777	133366778	+	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	-28326	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr19.49999397.-	chr19	49999397	49999398	-	0	NA	promoter-TSS (NM_001015)	promoter-TSS (NM_001015)	225	NM_001015	6205	Hs.433529	NM_001015	ENSG00000142534	RPS11	S11	ribosomal protein S11	protein-coding
chr12.20930575.-	chr12	20930575	20930576	-	0	NA	Intergenic	LTR12C|LTR|ERV1	33063	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr6.12041580.-	chr6	12041580	12041581	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28856	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr4.5892153.-	chr4	5892153	5892154	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1838	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr2.39267445.-	chr2	39267445	39267446	-	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	79960	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr16.9185059.+	chr16	9185059	9185060	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-478	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr8.55038071.-	chr8	55038071	55038072	-	0	NA	Intergenic	SVA_F|Other|Other	9710	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
chr12.38493564.+	chr12	38493564	38493565	+	0	NA	Intergenic	Intergenic	-216993	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr5.107718183.-	chr5	107718183	107718184	-	0	NA	promoter-TSS (NM_001163315)	promoter-TSS (NM_001163315)	384	NM_001163315	64839	Hs.657225	NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine-rich repeat protein 17	protein-coding
chr13.111467831.-	chr13	111467831	111467832	-	0	NA	Intergenic	Intergenic	-54824	NR_027701	283487	Hs.245390	NM_178514		LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	miscRNA
chrX.71471034.+	chrX	71471034	71471035	+	0	NA	"intron (NM_001170747, intron 3 of 3)"	AluY|SINE|Alu	-12176	NM_017669	54821	Hs.47558	NM_001009954	ENSG00000186871	ERCC6L	PICH|RAD26L	"excision repair cross-complementing rodent repair deficiency, complementation group 6-like"	protein-coding
chr8.216719.-	chr8	216719	216720	-	0	NA	Intergenic	CpG	-34335	NM_001042416	169270	Hs.591388	NM_001042415	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
chr2.198058499.+	chr2	198058499	198058500	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117022	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr19.21324960.-	chr19	21324960	21324961	-	0	NA	"5' UTR (NM_133473, exon 1 of 5)"	"5' UTR (NM_133473, exon 1 of 5)"	-120	NM_133473	170959	Hs.687547	NM_133473	ENSG00000196705	ZNF431	-	zinc finger protein 431	protein-coding
chr21.47367542.-	chr21	47367542	47367543	-	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	34121	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr18.21729707.+	chr18	21729707	21729708	+	0	NA	"intron (NM_153769, intron 3 of 5)"	LTR12C|LTR|ERV1	10259	NM_138644	26256	Hs.511983	NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine-(Y)-phosphorylation regulated	protein-coding
chr9.15423051.+	chr9	15423051	15423052	+	0	NA	"exon (NM_001039697, exon 1 of 9)"	"exon (NM_001039697, exon 1 of 9)"	269	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr11.77200951.+	chr11	77200951	77200952	+	0	NA	Intergenic	SVA_D|Other|Other	-15843	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr17.27194198.+	chr17	27194198	27194199	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5450	NR_039885	100616385		NR_039885	ENSG00000265772	MIR4732	-	microRNA 4732	miscRNA
chr16.68028280.+	chr16	68028280	68028281	+	0	NA	"intron (NM_022355, intron 1 of 10)"	"intron (NM_022355, intron 1 of 10)"	5141	NM_022355	64174	Hs.372633	NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
chr8.8748776.-	chr8	8748776	8748777	-	0	NA	"exon (NM_004225, exon 1 of 3)"	"exon (NM_004225, exon 1 of 3)"	-2355	NM_004225	9258	Hs.379414	NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
chr8.99439625.-	chr8	99439625	99439626	-	0	NA	"intron (NM_020697, intron 1 of 1)"	CpG	-375	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr10.134216441.-	chr10	134216441	134216442	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5739	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr7.8008951.-	chr7	8008951	8008952	-	0	NA	"5' UTR (NM_138426, exon 1 of 8)"	"5' UTR (NM_138426, exon 1 of 8)"	-577	NM_138426	113263	Hs.131673	NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced transcript 1	protein-coding
chrM.16336.+	chrM	16336	16337	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.183551394.-	chr2	183551394	183551395	-	0	NA	Intergenic	L1PA5|LINE|L1	29374	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr2.242512516.-	chr2	242512516	242512517	-	0	NA	"3' UTR (NM_032515, exon 5 of 5)"	"3' UTR (NM_032515, exon 5 of 5)"	13958	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr9.123743128.+	chr9	123743128	123743129	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51677	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr20.4729599.-	chr20	4729599	4729600	-	0	NA	Intergenic	Intergenic	8285	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr3.8721156.+	chr3	8721156	8721157	+	0	NA	Intergenic	Intergenic	-27392	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr12.123259470.-	chr12	123259470	123259471	-	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	-414	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chr17.40601031.+	chr17	40601031	40601032	+	0	NA	Intergenic	SVA_D|Other|Other	-9831	NM_001130021	535	Hs.463074	NM_001130020	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	"ATPase, H+ transporting, lysosomal V0 subunit a1"	protein-coding
chr1.181074624.-	chr1	181074624	181074625	-	0	NA	Intergenic	CpG	-16986	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr2.213402717.-	chr2	213402717	213402718	-	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	-635	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr16.3067458.-	chr16	3067458	3067459	-	0	NA	"intron (NM_021195, intron 1 of 1)"	"intron (NM_021195, intron 1 of 1)"	-730	NM_021195	9074	Hs.533779	NM_021195	ENSG00000184697	CLDN6	-	claudin 6	protein-coding
chr22.17566187.+	chr22	17566187	17566188	+	0	NA	"intron (NM_014339, intron 1 of 12)"	CpG	338	NM_014339	23765	Hs.48353	NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|hIL-17R	interleukin 17 receptor A	protein-coding
chr2.207036825.+	chr2	207036825	207036826	+	0	NA	Intergenic	SVA_D|Other|Other	9873	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr19.48814143.-	chr19	48814143	48814144	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9189	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr7.56888253.+	chr7	56888253	56888254	+	0	NA	Intergenic	Intergenic	61586	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr16.89034191.+	chr16	89034191	89034192	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9313	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr20.3148781.-	chr20	3148781	3148782	-	0	NA	"5' UTR (NM_014731, exon 1 of 3)"	"5' UTR (NM_014731, exon 1 of 3)"	-426	NM_014731	9762	Hs.90232	NM_014731	ENSG00000088899	LZTS3	PROSAPIP1|RP5-1187M17.10	"leucine zipper, putative tumor suppressor family member 3"	protein-coding
chr14.74708126.-	chr14	74708126	74708127	-	0	NA	"intron (NM_182894, intron 2 of 4)"	CpG-7195	-1951	NM_182894	338917	Hs.449771	NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
chr14.105158947.+	chr14	105158947	105158948	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	3004	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr15.75772874.-	chr15	75772874	75772875	-	0	NA	"intron (NM_002833, intron 8 of 12)"	CpG	24750	NM_001145357	25942	Hs.513039	NM_001145357	ENSG00000169375	SIN3A	-	SIN3 transcription regulator homolog A (yeast)	protein-coding
chr4.91281359.+	chr4	91281359	91281360	+	0	NA	"intron (NM_207491, intron 3 of 7)"	AluSx3|SINE|Alu	125177	NM_207491	401145	Hs.654735	NM_001145065	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
chr4.57633165.-	chr4	57633165	57633166	-	0	NA	Intergenic	AluSc8|SINE|Alu	-54474	NR_073417	6691	Hs.98243	NM_001271718	ENSG00000128040	SPINK2	HUSI-II	"serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)"	protein-coding
chr7.51968717.-	chr7	51968717	51968718	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584202	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
chr17.8342582.-	chr17	8342582	8342583	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3412	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr2.141963992.-	chr2	141963992	141963993	-	0	NA	"intron (NM_018557, intron 6 of 90)"	AluY|SINE|Alu	-925278	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
chr17.40316785.+	chr17	40316785	40316786	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9723	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr2.86948196.-	chr2	86948196	86948197	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	-49	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr2.235844052.+	chr2	235844052	235844053	+	0	NA	Intergenic	Intergenic	-16576	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr9.139094897.-	chr9	139094897	139094898	-	0	NA	"5' UTR (NM_014564, exon 1 of 6)"	"5' UTR (NM_014564, exon 1 of 6)"	-107	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr19.41641970.-	chr19	41641970	41641971	-	0	NA	Intergenic	CpG	-21617	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr6.4780639.+	chr6	4780639	4780640	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3959	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr19.18180391.+	chr19	18180391	18180392	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17306	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr3.112808049.-	chr3	112808049	112808050	-	0	NA	Intergenic	AluYc|SINE|Alu	69494	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr3.48918145.-	chr3	48918145	48918146	-	0	NA	"intron (NM_000387, intron 3 of 8)"	AluJb|SINE|Alu	-18281	NM_000387	788	Hs.13845	NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	"solute carrier family 25 (carnitine/acylcarnitine translocase), member 20"	protein-coding
chr15.74219312.+	chr15	74219312	74219313	+	0	NA	"exon (NM_005576, exon 1 of 7)"	"exon (NM_005576, exon 1 of 7)"	523	NM_005576	4016	Hs.65436	NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase-like 1	protein-coding
chr20.62479321.-	chr20	62479321	62479322	-	0	NA	Intergenic	Intergenic	13245	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr19.7123240.+	chr19	7123240	7123241	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53769	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr1.10720452.-	chr1	10720452	10720453	-	0	NA	"exon (NM_017766, exon 6 of 16)"	"exon (NM_017766, exon 6 of 16)"	-136281	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chrX.68956140.+	chrX	68956140	68956141	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSp|SINE|Alu	120229	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr22.24237326.+	chr22	24237326	24237327	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	761	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr9.138065690.+	chr9	138065690	138065691	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7765	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr1.80177660.-	chr1	80177660	80177661	-	0	NA	Intergenic	AluSx|SINE|Alu	705165	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr9.83940618.-	chr9	83940618	83940619	-	0	NA	Intergenic	AluY|SINE|Alu	-362978	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr7.124427230.-	chr7	124427230	124427231	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3634	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr18.67270864.-	chr18	67270864	67270865	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202580	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr7.157129527.+	chr7	157129527	157129528	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-183	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr12.34353898.-	chr12	34353898	34353899	-	0	NA	Intergenic	AluSz|SINE|Alu	-178682	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr12.31575298.+	chr12	31575298	31575299	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96139	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr12.112161133.+	chr12	112161133	112161134	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37276	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr19.50614540.-	chr19	50614540	50614541	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1205	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr1.161508243.+	chr1	161508243	161508244	+	0	NA	Intergenic	AluYf4|SINE|Alu	11575	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr12.96314666.+	chr12	96314666	96314667	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21762	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr16.68233567.-	chr16	68233567	68233568	-	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	-36569	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr5.28928051.-	chr5	28928051	28928052	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1074	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr4.1873395.+	chr4	1873395	1873396	+	0	NA	"intron (NM_001042424, intron 1 of 21)"	CpG	272	NM_001042424	7468	Hs.113876	NM_001042424	ENSG00000109685	WHSC1	MMSET|NSD2|REIIBP|TRX5|WHS	Wolf-Hirschhorn syndrome candidate 1	protein-coding
chr10.133203414.-	chr10	133203414	133203415	-	0	NA	Intergenic	Intergenic	93430	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr7.45649954.-	chr7	45649954	45649955	-	0	NA	"intron (NM_021116, intron 2 of 19)"	"intron (NM_021116, intron 2 of 19)"	-35829	NM_021116	107	Hs.192215	NM_021116	ENSG00000164742	ADCY1	AC1	adenylate cyclase 1 (brain)	protein-coding
chr2.126700651.-	chr2	126700651	126700652	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712860	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr3.102974048.+	chr3	102974048	102974049	+	0	NA	Intergenic	SVA_D|Other|Other	820189	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr17.1143408.-	chr17	1143408	1143409	-	0	NA	Intergenic	AluYk11|SINE|Alu	30450	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr16.77246840.-	chr16	77246840	77246841	-	0	NA	"3' UTR (NM_001129979, exon 11 of 11)"	"3' UTR (NM_001129979, exon 11 of 11)"	-13491	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr6.88090596.-	chr6	88090596	88090597	-	0	NA	Intergenic	AluJb|SINE|Alu	16246	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr20.62657606.+	chr20	62657606	62657607	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8091	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr1.26670746.+	chr1	26670746	26670747	+	0	NA	"exon (NM_001039775, exon 2 of 20)"	"exon (NM_001039775, exon 2 of 20)"	9875	NM_001039775	55057	Hs.128738	NM_017977		AIM1L	CRYBG2	absent in melanoma 1-like	protein-coding
chr16.75395273.-	chr16	75395273	75395274	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluSz|SINE|Alu	-72114	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
chr6.111924241.+	chr6	111924241	111924242	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3236	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr12.58120514.-	chr12	58120514	58120515	-	0	NA	"exon (NM_001122772, exon 19 of 19)"	"exon (NM_001122772, exon 19 of 19)"	-491	NR_027032	100130776	Hs.656080	NR_027032	ENSG00000255737	LOC100130776	-	uncharacterized LOC100130776	miscRNA
chr12.107997754.-	chr12	107997754	107997755	-	0	NA	"intron (NM_001017523, intron 2 of 14)"	AluY|SINE|Alu	-23120	NM_001017523	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	-	BTB (POZ) domain containing 11	protein-coding
chr3.174240445.-	chr3	174240445	174240446	-	0	NA	Intergenic	AluY|SINE|Alu	336666	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr1.153574135.+	chr1	153574135	153574136	+	0	NA	Intergenic	AluY|SINE|Alu	11379	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr7.5482136.+	chr7	5482136	5482137	+	0	NA	Intergenic	AluJo|SINE|Alu	-18959	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr19.34559854.+	chr19	34559854	34559855	+	0	NA	Intergenic	AluYf4|SINE|Alu	-103498	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr5.179281176.+	chr5	179281176	179281177	+	0	NA	"intron (NM_001017987, intron 1 of 4)"	AluY|SINE|Alu	4664	NM_001017987	51149	Hs.741169	NM_001018061	ENSG00000161010	C5orf45	-	chromosome 5 open reading frame 45	protein-coding
chr12.122052226.-	chr12	122052226	122052227	-	0	NA	Intergenic	Intergenic	12229	NM_032790	84876	Hs.55148	NM_032790		ORAI1	CRACM1|ORAT1|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
chr5.14460463.-	chr5	14460463	14460464	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121428	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr19.33557649.+	chr19	33557649	33557650	+	0	NA	Intergenic	Intergenic	-1825	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr6.13487366.+	chr6	13487366	13487367	+	0	NA	promoter-TSS (NM_001242628)	promoter-TSS (NM_001242628)	503	NM_018988	54438	Hs.484686	NM_033069		GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
chr1.109995541.-	chr1	109995541	109995542	-	0	NA	Intergenic	AluY|SINE|Alu	13559	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr14.100018414.+	chr14	100018414	100018415	+	0	NA	"intron (NM_001144995, intron 1 of 5)"	"intron (NM_001144995, intron 1 of 5)"	52313	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
chr9.108210409.-	chr9	108210409	108210410	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-84	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr17.48631004.-	chr17	48631004	48631005	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6554	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chrX.47518733.+	chrX	47518733	47518734	+	0	NA	promoter-TSS (NM_153477)	promoter-TSS (NM_153477)	-154	NM_004182	8409	Hs.735566	NM_004182	ENSG00000126756	UXT	ART-27|STAP1	"ubiquitously-expressed, prefoldin-like chaperone"	protein-coding
chr3.192348634.+	chr3	192348634	192348635	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96754	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr17.80687676.+	chr17	80687676	80687677	+	0	NA	Intergenic	CpG	-5776	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr18.46502023.-	chr18	46502023	46502024	-	0	NA	Intergenic	CpG	24942	NM_001190821	4092	Hs.465087	NM_001190821	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
chr9.33194266.+	chr9	33194266	33194267	+	0	NA	Intergenic	AluY|SINE|Alu	-26910	NM_001497	2683	Hs.272011	NM_001497	ENSG00000086062	B4GALT1	B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1	"UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1"	protein-coding
chr2.136403823.+	chr2	136403823	136403824	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19144	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr18.11959815.+	chr18	11959815	11959816	+	0	NA	Intergenic	SVA_D|Other|Other	-21612	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr11.129686253.-	chr11	129686253	129686254	-	0	NA	"intron (NM_138788, intron 1 of 5)"	"intron (NM_138788, intron 1 of 5)"	-512	NM_138788	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
chr1.54839921.-	chr1	54839921	54839922	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32058	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr15.68122250.+	chr15	68122250	68122251	+	0	NA	"intron (NM_001258024, intron 9 of 14)"	CpG-8016	10208	NM_001258024	390598	Hs.451224	NM_001031807		SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
chrM.10143.-	chrM	10143	10144	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.656858.+	chr16	656858	656859	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16685	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr17.72049274.-	chr17	72049274	72049275	-	0	NA	Intergenic	Intergenic	150521	NM_000999	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr17.34053872.+	chr17	34053872	34053873	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4807	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr5.44940622.+	chr5	44940622	44940623	+	0	NA	Intergenic	AluYc|SINE|Alu	131595	NM_016640	10884	Hs.124165	NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
chrX.53111685.+	chrX	53111685	53111686	+	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	143	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.21789908.+	chr19	21789908	21789909	+	0	NA	Intergenic	SVA_D|Other|Other	101471	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr9.129611137.-	chr9	129611137	129611138	-	0	NA	Intergenic	AluY|SINE|Alu	11807	NM_001099270	403341	Hs.177633	NM_203482	ENSG00000177125	ZBTB34	RP11-106H5.1|ZNF918	zinc finger and BTB domain containing 34	protein-coding
chr3.42630478.+	chr3	42630478	42630479	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1820	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr3.46735054.+	chr3	46735054	46735055	+	0	NA	promoter-TSS (NM_001190707)	promoter-TSS (NM_001190707)	92	NM_001190707	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr1.210574748.-	chr1	210574748	210574749	-	0	NA	"intron (NM_001170587, intron 4 of 10)"	AluSx1|SINE|Alu	-72108	NM_001170580	55733	Hs.58650	NM_001122834	ENSG00000054392	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
chr6.45365115.-	chr6	45365115	45365116	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19327	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr9.138593929.+	chr9	138593929	138593930	+	0	NA	promoter-TSS (NM_020822)	promoter-TSS (NM_020822)	-102	NM_001272003	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr22.51159022.+	chr22	51159022	51159023	+	0	NA	"exon (NM_033517, exon 21 of 22)"	"exon (NM_033517, exon 21 of 22)"	-17630	NM_001097	49	Hs.370870	NM_001097	ENSG00000100312	ACR	-	acrosin	protein-coding
chr7.12595786.+	chr7	12595786	12595787	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14417	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr11.8302399.-	chr11	8302399	8302400	-	0	NA	Intergenic	AluY|SINE|Alu	12217	NM_001270428	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
chr19.2926820.+	chr19	2926820	2926821	+	0	NA	Intergenic	CpG	18149	NM_021217	58492	Hs.38004	NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
chr12.100804238.+	chr12	100804238	100804239	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53381	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr22.50655108.+	chr22	50655108	50655109	+	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	15700	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr9.16766062.-	chr9	16766062	16766063	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104724	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr19.7989891.+	chr19	7989891	7989892	+	0	NA	"3' UTR (NM_206833, exon 2 of 2)"	"3' UTR (NM_206833, exon 2 of 2)"	1160	NM_206833	404217	Hs.657978	NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
chr12.117605462.-	chr12	117605462	117605463	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22838	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr6.149638266.-	chr6	149638266	149638267	-	0	NA	Intergenic	CpG	1170	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr16.67851384.+	chr16	67851384	67851385	+	0	NA	"intron (NM_018430, intron 2 of 15)"	AluY|SINE|Alu	10374	NM_018430	55815	Hs.632212	NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin-associated factor X interacting protein 1	protein-coding
chr6.133986056.-	chr6	133986056	133986057	-	0	NA	Intergenic	SVA_F|Other|Other	156229	NR_027030	154089	Hs.126165	NR_027030		MGC34034	-	uncharacterized protein MGC34034	miscRNA
chr5.78890162.+	chr5	78890162	78890163	+	0	NA	Intergenic	AluY|SINE|Alu	-18081	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr14.101693746.-	chr14	101693746	101693747	-	0	NA	Intergenic	Intergenic	-157498	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr11.6429153.+	chr11	6429153	6429154	+	0	NA	"intron (NM_001257324, intron 1 of 7)"	AluYb8|SINE|Alu	-2262	NM_001257320	322	Hs.372840	NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	protein-coding
chr2.68031697.+	chr2	68031697	68031698	+	0	NA	Intergenic	AluY|SINE|Alu	258462	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr5.17141139.-	chr5	17141139	17141140	-	0	NA	"intron (NR_027253, intron 2 of 2)"	AluY|SINE|Alu	75793	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr2.213546688.-	chr2	213546688	213546689	-	0	NA	Intergenic	AluSc8|SINE|Alu	143336	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr1.66220923.+	chr1	66220923	66220924	+	0	NA	Intergenic	AluSc8|SINE|Alu	-37270	NM_001037341	5142	Hs.198072	NM_001037339	ENSG00000184588	PDE4B	DPDE4|PDE4B5|PDEIVB	"phosphodiesterase 4B, cAMP-specific"	protein-coding
chrM.841.-	chrM	841	842	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.205782345.+	chr1	205782345	205782346	+	0	NA	promoter-TSS (NM_173854)	promoter-TSS (NM_173854)	-184	NM_173854	254428	Hs.20274	NM_173854	ENSG00000133065	SLC41A1	MgtE	"solute carrier family 41, member 1"	protein-coding
chr16.1815041.+	chr16	1815041	1815042	+	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	6669	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr9.140057364.+	chr9	140057364	140057365	+	0	NA	"exon (NM_001185091, exon 16 of 20)"	"exon (NM_001185091, exon 16 of 20)"	6358	NR_037416	100500811		NR_037416		MIR3621	-	microRNA 3621	miscRNA
chr1.6471034.+	chr1	6471034	6471035	+	0	NA	Intergenic	Intergenic	8945	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr17.7246118.-	chr17	7246118	7246119	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6270	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chrX.133976867.-	chrX	133976867	133976868	-	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	-35644	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chrX.689434.-	chrX	689434	689435	-	0	NA	Intergenic	Intergenic	-104355	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr8.33580499.-	chr8	33580499	33580500	-	0	NA	Intergenic	CpG	123060	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
chr3.36494718.-	chr3	36494718	36494719	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72621	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr19.1912343.+	chr19	1912343	1912344	+	0	NA	"exon (NM_138422, exon 2 of 2)"	"exon (NM_138422, exon 2 of 2)"	6970	NM_079834	113178	Hs.144980	NM_079834	ENSG00000227500	SCAMP4	SCAMP-4	secretory carrier membrane protein 4	protein-coding
chr9.137200947.+	chr9	137200947	137200948	+	0	NA	Intergenic	Intergenic	-17369	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr16.632119.-	chr16	632119	632120	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7238	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr11.66997306.+	chr11	66997306	66997307	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10200	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr22.20137607.-	chr22	20137607	20137608	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	176	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr16.84670295.+	chr16	84670295	84670296	+	0	NA	Intergenic	AluY|SINE|Alu	-11836	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr10.104210256.-	chr10	104210256	104210257	-	0	NA	"exon (NM_024886, exon 2 of 2)"	"exon (NM_024886, exon 2 of 2)"	-682	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr22.31420903.+	chr22	31420903	31420904	+	0	NA	Intergenic	AluSx|SINE|Alu	55269	NR_002323	55000	Hs.554829	NR_002323		TUG1	LINC00080|NCRNA00080|TI-227H	taurine upregulated 1 (non-protein coding)	miscRNA
chr19.50670090.+	chr19	50670090	50670091	+	0	NA	Intergenic	AluSg|SINE|Alu	-3552	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr11.74107024.-	chr11	74107024	74107025	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2478	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr22.24237217.+	chr22	24237217	24237218	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	652	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr17.65766225.-	chr17	65766225	65766226	-	0	NA	Intergenic	AluSg4|SINE|Alu	-29439	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr21.45243644.+	chr21	45243644	45243645	+	0	NA	Intergenic	Intergenic	-11196	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr10.45240274.+	chr10	45240274	45240275	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166490	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr9.131013026.-	chr9	131013026	131013027	-	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	5717	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr3.186441584.-	chr3	186441584	186441585	-	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	-6486	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr6.158700228.+	chr6	158700228	158700229	+	0	NA	Intergenic	AluY|SINE|Alu	-33464	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr14.35080563.+	chr14	35080563	35080564	+	0	NA	"intron (NM_021249, intron 1 of 12)"	AluSz6|SINE|Alu	18752	NM_021249	58533	Hs.356647	NM_152233	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
chr3.49935107.+	chr3	49935107	49935108	+	0	NA	"exon (NM_002447, exon 6 of 20)"	"exon (NM_002447, exon 6 of 20)"	6199	NM_001244937	4486	Hs.517973	NM_001244937	ENSG00000164078	MST1R	CD136|CDw136|PTK8|RON	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding
chr3.47411283.-	chr3	47411283	47411284	-	0	NA	Intergenic	AluSq|SINE|Alu	11208	NM_015466	25930	Hs.25524	NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|PTP-TD14	"protein tyrosine phosphatase, non-receptor type 23"	protein-coding
chr3.175931471.+	chr3	175931471	175931472	+	0	NA	Intergenic	LTR12C|LTR|ERV1	844142	NR_039952	100616395		NR_039952		MIR4789	-	microRNA 4789	miscRNA
chr4.39137251.+	chr4	39137251	39137252	+	0	NA	Intergenic	AluSq2|SINE|Alu	-46773	NM_025132	57728	Hs.438482	NM_025132	ENSG00000157796	WDR19	ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP	WD repeat domain 19	protein-coding
chr6.158700173.+	chr6	158700173	158700174	+	0	NA	Intergenic	AluY|SINE|Alu	-33519	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr19.1252660.+	chr19	1252660	1252661	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4108	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr2.115328219.-	chr2	115328219	115328220	-	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	-109039	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr7.2943513.+	chr7	2943513	2943514	+	0	NA	Intergenic	Intergenic	-59554	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr4.989213.-	chr4	989213	989214	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1989	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr2.109090608.+	chr2	109090608	109090609	+	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	25031	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr1.18069674.+	chr1	18069674	18069675	+	0	NA	Intergenic	Intergenic	-12134	NM_030812	81569	Hs.2149	NM_030812	ENSG00000117148	ACTL8	CT57	actin-like 8	protein-coding
chr19.10756891.-	chr19	10756891	10756892	-	0	NA	Intergenic	AluSg|SINE|Alu	-7657	NR_024333	147727	Hs.631616	NR_024333	ENSG00000267100	ILF3-AS1	-	ILF3 antisense RNA 1 (head to head)	miscRNA
chr3.195928190.+	chr3	195928190	195928191	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSx1|SINE|Alu	10110	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr3.172180146.-	chr3	172180146	172180147	-	0	NA	Intergenic	AluY|SINE|Alu	13900	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr1.200941704.-	chr1	200941704	200941705	-	0	NA	"3' UTR (NM_001252102, exon 35 of 35)"	"3' UTR (NM_001252102, exon 35 of 35)"	-51124	NM_001252103	23046	Hs.169182	NM_001252100	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
chr11.113666013.+	chr11	113666013	113666014	+	0	NA	Intergenic	AluSx|SINE|Alu	15495	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr7.95234912.+	chr7	95234912	95234913	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8987	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr3.49297108.+	chr3	49297108	49297109	+	0	NA	Intergenic	AluY|SINE|Alu	-14445	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	miscRNA
chr1.192778178.+	chr1	192778178	192778179	+	0	NA	promoter-TSS (NM_002923)	promoter-TSS (NM_002923)	9	NM_002923	5997	Hs.78944	NM_002923	ENSG00000116741	RGS2	G0S8	"regulator of G-protein signaling 2, 24kDa"	protein-coding
chr7.100044660.+	chr7	100044660	100044661	+	0	NA	Intergenic	AluY|SINE|Alu	-10566	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr9.113201963.+	chr9	113201963	113201964	+	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	-101838	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chr12.75694205.-	chr12	75694205	75694206	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29631	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr20.24038356.+	chr20	24038356	24038357	+	0	NA	Intergenic	AluY|SINE|Alu	-68940	NM_178311	92086	Hs.355394	NM_178311	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
chr3.125634842.-	chr3	125634842	125634843	-	0	NA	promoter-TSS (NR_024250)	promoter-TSS (NR_024250)	602	NR_024250	100125556	Hs.553949	NR_024250	ENSG00000171084	FAM86JP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr16.17658405.+	chr16	17658405	17658406	+	0	NA	Intergenic	AluJb|SINE|Alu	-93667	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr9.14830620.+	chr9	14830620	14830621	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51089	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr8.143373448.+	chr8	143373448	143373449	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93731	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr12.104506934.-	chr12	104506934	104506935	-	0	NA	Intergenic	AluY|SINE|Alu	-25106	NM_006166	4801	Hs.84928	NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	"nuclear transcription factor Y, beta"	protein-coding
chrX.39680350.-	chrX	39680350	39680351	-	0	NA	Intergenic	CpG	-276369	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr10.64976222.+	chr10	64976222	64976223	+	0	NA	"intron (NM_004241, intron 2 of 22)"	AluY|SINE|Alu	52760	NM_004241	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	RP11-10C13.2|TRIP8	jumonji domain containing 1C	protein-coding
chr16.31932521.+	chr16	31932521	31932522	+	0	NA	Intergenic	AluY|SINE|Alu	47442	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr21.43198276.+	chr21	43198276	43198277	+	0	NA	Intergenic	Intergenic	-11027	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr8.6644895.+	chr8	6644895	6644896	+	0	NA	Intergenic	AluY|SINE|Alu	-42134	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr3.93689464.+	chr3	93689464	93689465	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3470	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr5.139127224.-	chr5	139127224	139127225	-	0	NA	Intergenic	CpG	48182	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
chr3.172180154.+	chr3	172180154	172180155	+	0	NA	Intergenic	AluY|SINE|Alu	-13908	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr2.90482948.-	chr2	90482948	90482949	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365027	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr10.134216432.+	chr10	134216432	134216433	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5730	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr3.29051407.+	chr3	29051407	29051408	+	0	NA	Intergenic	AluSc8|SINE|Alu	-271396	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr11.36562117.+	chr11	36562117	36562118	+	0	NA	Intergenic	AluY|SINE|Alu	-27446	NM_000448	5896	Hs.677010	NM_000448	ENSG00000166349	RAG1	RAG-1|RNF74	recombination activating gene 1	protein-coding
chr1.242178343.+	chr1	242178343	242178344	+	0	NA	Intergenic	AluY|SINE|Alu	-15958	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr8.23131188.-	chr8	23131188	23131189	-	0	NA	Intergenic	AluSx|SINE|Alu	14424	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr2.87642261.+	chr2	87642261	87642262	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-112713	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr16.87799863.+	chr16	87799863	87799864	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-265	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr11.45810293.+	chr11	45810293	45810294	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15330	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr2.241363386.+	chr2	241363386	241363387	+	0	NA	Intergenic	Intergenic	-11729	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr3.22843173.+	chr3	22843173	22843174	+	0	NA	Intergenic	L1PA2|LINE|L1	-401611	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr19.33776892.-	chr19	33776892	33776893	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16538	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr10.37024495.-	chr10	37024495	37024496	-	0	NA	Intergenic	AluY|SINE|Alu	390290	NM_052997	91074	Hs.373787	NM_052997	ENSG00000148513	ANKRD30A	NY-BR-1	ankyrin repeat domain 30A	protein-coding
chr6.89326904.+	chr6	89326904	89326905	+	0	NA	"intron (NM_003800, intron 14 of 15)"	AluY|SINE|Alu	346444	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr2.242530363.-	chr2	242530363	242530364	-	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	-26553	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr19.868173.+	chr19	868173	868174	+	0	NA	"exon (NM_005481, exon 16 of 16)"	"exon (NM_005481, exon 16 of 16)"	8508	NM_001928	1675	Hs.155597	NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D (adipsin)	protein-coding
chr6.12041584.-	chr6	12041584	12041585	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28860	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr12.64883612.+	chr12	64883612	64883613	+	0	NA	"intron (NM_013254, intron 12 of 20)"	AluSc8|SINE|Alu	37772	NM_013254	29110	Hs.505874	NM_013254	ENSG00000183735	TBK1	NAK|T2K	TANK-binding kinase 1	protein-coding
chr21.45205971.-	chr21	45205971	45205972	-	0	NA	Intergenic	AluYc|SINE|Alu	3447	NM_003683	8568	Hs.110757	NM_003683		RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding
chr13.49426628.+	chr13	49426628	49426629	+	0	NA	Intergenic	AluSp|SINE|Alu	-123420	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr6.168219486.-	chr6	168219486	168219487	-	0	NA	Intergenic	AluSp|SINE|Alu	-7990	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr11.1946049.+	chr11	1946049	1946050	+	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	5250	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr14.23517081.+	chr14	23517081	23517082	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5705	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr17.80373923.-	chr17	80373923	80373924	-	0	NA	"intron (NM_175902, intron 1 of 9)"	AluSq2|SINE|Alu	2329	NM_173620	284004	Hs.744207	NM_173620	ENSG00000169660	HEXDC	-	"hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing"	protein-coding
chr6.41732917.+	chr6	41732917	41732918	+	0	NA	Intergenic	AluSx1|SINE|Alu	14713	NM_006653	10817	Hs.194208	NM_006653	ENSG00000137218	FRS3	FRS2B|FRS2beta|SNT-2|SNT2	fibroblast growth factor receptor substrate 3	protein-coding
chr20.62108024.+	chr20	62108024	62108025	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4031	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr11.2907446.+	chr11	2907446	2907447	+	0	NA	promoter-TSS (NM_001122630)	promoter-TSS (NM_001122630)	-451	NM_000076	1028	Hs.106070	NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	"cyclin-dependent kinase inhibitor 1C (p57, Kip2)"	protein-coding
chr16.3095696.+	chr16	3095696	3095697	+	0	NA	promoter-TSS (NM_022468)	promoter-TSS (NM_022468)	-986	NM_022468	64386	Hs.654979	NM_022468	ENSG00000008516	MMP25	MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6	matrix metallopeptidase 25	protein-coding
chr16.17617288.-	chr16	17617288	17617289	-	0	NA	Intergenic	AluSz|SINE|Alu	52550	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr6.34101144.+	chr6	34101144	34101145	+	0	NA	"exon (NM_000841, exon 2 of 11)"	"exon (NM_000841, exon 2 of 11)"	12770	NM_001256811	2914	Hs.736330	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	"glutamate receptor, metabotropic 4"	protein-coding
chr11.31847818.-	chr11	31847818	31847819	-	0	NA	"intron (NR_033971, intron 1 of 2)"	CpG	8309	NM_001258462	5080	Hs.611376	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|MGDA|WAGR	paired box 6	protein-coding
chr1.145400419.+	chr1	145400419	145400420	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12772	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr15.71846729.-	chr15	71846729	71846730	-	0	NA	"intron (NM_024817, intron 6 of 16)"	AluY|SINE|Alu	256165	NM_014249	10002	Hs.187354	NM_014249		NR2E3	ESCS|PNR|RNR|RP37|rd7	"nuclear receptor subfamily 2, group E, member 3"	protein-coding
chr2.21484563.+	chr2	21484563	21484564	+	0	NA	Intergenic	Intergenic	-217618	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr14.20670520.+	chr14	20670520	20670521	+	0	NA	Intergenic	AluSq2|SINE|Alu	5025	NM_001005503	390439	Hs.554582	NM_001005503	ENSG00000196832	OR11G2	OR14-34	"olfactory receptor, family 11, subfamily G, member 2"	protein-coding
chr10.324403.-	chr10	324403	324404	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98469	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr17.18575626.-	chr17	18575626	18575627	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-868	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr16.29245037.-	chr16	29245037	29245038	-	0	NA	Intergenic	Intergenic	68571	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr3.14349528.+	chr3	14349528	14349529	+	0	NA	Intergenic	Intergenic	-94578	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr11.915983.+	chr11	915983	915984	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-925	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr11.64837516.+	chr11	64837516	64837517	+	0	NA	Intergenic	Intergenic	-11507	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr2.79892036.+	chr2	79892036	79892037	+	0	NA	"intron (NM_001164883, intron 2 of 16)"	AluY|SINE|Alu	-15551	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr19.8398463.-	chr19	8398463	8398464	-	0	NA	"intron (NM_198471, intron 6 of 10)"	CpG	-9683	NM_198471	256949	Hs.322473	NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
chr18.63211116.-	chr18	63211116	63211117	-	0	NA	Intergenic	AluY|SINE|Alu	206372	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr21.45684293.-	chr21	45684293	45684294	-	0	NA	Intergenic	AluY|SINE|Alu	2194	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr8.67618021.+	chr8	67618021	67618022	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6632	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr6.75914791.+	chr6	75914791	75914792	+	0	NA	"intron (NM_080645, intron 1 of 50)"	CpG	832	NM_080645	1303	Hs.101302	NM_004370	ENSG00000111799	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	"collagen, type XII, alpha 1"	protein-coding
chr20.17960347.-	chr20	17960347	17960348	-	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	-10585	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr21.47485679.-	chr21	47485679	47485680	-	0	NA	Intergenic	Intergenic	32354	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr10.80829903.+	chr10	80829903	80829904	+	0	NA	"intron (NM_020338, intron 1 of 24)"	CpG-2984	1111	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	"zinc finger, MIZ-type containing 1"	protein-coding
chr5.17207840.-	chr5	17207840	17207841	-	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	9092	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr21.45232257.+	chr21	45232257	45232258	+	0	NA	"non-coding (NR_026961, exon 1 of 2)"	"non-coding (NR_026961, exon 1 of 2)"	191	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr11.47207933.-	chr11	47207933	47207934	-	0	NA	promoter-TSS (NM_016223)	promoter-TSS (NM_016223)	-77	NM_016223	29763	Hs.334639	NM_001184974	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
chr14.50087582.+	chr14	50087582	50087583	+	0	NA	promoter-TSS (NM_001001)	promoter-TSS (NM_001001)	93	NM_002408	4247	Hs.93338	NM_002408	ENSG00000168282	MGAT2	CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2	"mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase"	protein-coding
chr11.66676669.+	chr11	66676669	66676670	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1329	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr8.86574408.+	chr8	86574408	86574409	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	334	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr20.46387676.-	chr20	46387676	46387677	-	0	NA	"intron (NM_198596, intron 1 of 20)"	"intron (NM_198596, intron 1 of 20)"	-27132	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr6.139718197.+	chr6	139718197	139718198	+	0	NA	Intergenic	AluY|SINE|Alu	-22410	NM_006079	10370	Hs.82071	NM_001168388	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	"Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2"	protein-coding
chr2.235844062.+	chr2	235844062	235844063	+	0	NA	Intergenic	Intergenic	-16566	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr17.19437498.+	chr17	19437498	19437499	+	0	NA	"intron (NM_018242, intron 1 of 16)"	CpG	331	NM_018242	55244	Hs.232054	NM_018242	ENSG00000142494	SLC47A1	MATE1	"solute carrier family 47, member 1"	protein-coding
chr7.158790527.+	chr7	158790527	158790528	+	0	NA	Intergenic	Intergenic	-10518	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr14.102109504.-	chr14	102109504	102109505	-	0	NA	Intergenic	AluY|SINE|Alu	-81816	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr11.16894097.+	chr11	16894097	16894098	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133949	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr10.135031527.+	chr10	135031527	135031528	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12251	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr12.53535552.-	chr12	53535552	53535553	-	0	NA	Intergenic	AluY|SINE|Alu	-22725	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr4.8757525.-	chr4	8757525	8757526	-	0	NA	Intergenic	AluY|SINE|Alu	-116018	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr11.67029059.+	chr11	67029059	67029060	+	0	NA	Intergenic	Intergenic	-4846	NM_001619	156	Hs.83636	NM_001619	ENSG00000173020	ADRBK1	BARK1|BETA-ARK1|GRK2	"adrenergic, beta, receptor kinase 1"	protein-coding
chr16.632084.-	chr16	632084	632085	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7273	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr16.67194361.+	chr16	67194361	67194362	+	0	NA	promoter-TSS (NM_003789)	promoter-TSS (NM_003789)	470	NM_018378	55336	Hs.710714	NM_018378	ENSG00000135722	FBXL8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding
chr22.43238157.-	chr22	43238157	43238158	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15251	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr7.1587786.+	chr7	1587786	1587787	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8280	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr7.155089787.-	chr7	155089787	155089788	-	0	NA	"intron (NM_198336, intron 1 of 5)"	CpG	-301	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr5.86907777.+	chr5	86907777	86907778	+	0	NA	Intergenic	AluY|SINE|Alu	-198927	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr2.87655676.-	chr2	87655676	87655677	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	99298	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr2.905534.+	chr2	905534	905535	+	0	NA	Intergenic	Intergenic	-41020	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr1.182234369.+	chr1	182234369	182234370	+	0	NA	Intergenic	AluJb|SINE|Alu	126170	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr12.50254956.-	chr12	50254956	50254957	-	0	NA	Intergenic	SVA_D|Other|Other	18044	NM_181708	144233	Hs.142736	NM_181708		BCDIN3D	-	BCDIN3 domain containing	protein-coding
chr13.112597777.-	chr13	112597777	112597778	-	0	NA	Intergenic	MIRc|SINE|MIR	124136	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr16.28435249.+	chr16	28435249	28435250	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2526	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr17.43255863.+	chr17	43255863	43255864	+	0	NA	Intergenic	AluY|SINE|Alu	17599	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr1.39450160.+	chr1	39450160	39450161	+	0	NA	Intergenic	AluY|SINE|Alu	-6756	NM_024595	79647	Hs.293563	NM_001136275	ENSG00000174574	AKIRIN1	C1orf108|RP11-781D11.2|STRF2	akirin 1	protein-coding
chr9.133430106.+	chr9	133430106	133430107	+	0	NA	Intergenic	Intergenic	24775	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr18.11086441.-	chr18	11086441	11086442	-	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	-62320	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr7.16632870.+	chr7	16632870	16632871	+	0	NA	Intergenic	AluJb|SINE|Alu	52572	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr7.2943522.+	chr7	2943522	2943523	+	0	NA	Intergenic	Intergenic	-59563	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr17.80189254.-	chr17	80189254	80189255	-	0	NA	promoter-TSS (NM_001042423)	promoter-TSS (NM_001042423)	854	NM_001042423	9123	Hs.500761	NM_001042422	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	"solute carrier family 16, member 3 (monocarboxylic acid transporter 4)"	protein-coding
chr19.14156275.-	chr19	14156275	14156276	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13696	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr12.62886295.+	chr12	62886295	62886296	+	0	NA	"intron (NM_015026, intron 2 of 34)"	AluYb8|SINE|Alu	25698	NM_015026	23041	Hs.389378	NM_015026	ENSG00000061987	MON2	-	MON2 homolog (S. cerevisiae)	protein-coding
chr8.49427180.+	chr8	49427180	49427181	+	0	NA	Intergenic	CpG	220690	NM_024593	79645	Hs.23245	NM_001142857	ENSG00000034239	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
chr12.96096898.+	chr12	96096898	96096899	+	0	NA	"intron (NM_021229, intron 5 of 9)"	AluSx1|SINE|Alu	53867	NR_077225	100132594	Hs.676211	NR_077225		PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
chr14.105158915.+	chr14	105158915	105158916	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2972	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr1.206136172.-	chr1	206136172	206136173	-	0	NA	Intergenic	CpG	2739	NM_001123168	729533	Hs.661924	NM_001123168		FAM72A	LMPIP	"family with sequence similarity 72, member A"	protein-coding
chr1.160239878.+	chr1	160239878	160239879	+	0	NA	Intergenic	AluJo|SINE|Alu	-7528	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr21.47838744.-	chr21	47838744	47838745	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40118	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr21.47838742.-	chr21	47838742	47838743	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40120	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr1.171662924.+	chr1	171662924	171662925	+	0	NA	Intergenic	SVA_C|Other|Other	-41151	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr2.230932979.-	chr2	230932979	230932980	-	0	NA	"intron (NM_152527, intron 1 of 4)"	CpG	-736	NM_152527	151473	Hs.504317	NM_152527	ENSG00000163053	SLC16A14	MCT14	"solute carrier family 16, member 14 (monocarboxylic acid transporter 14)"	protein-coding
chr2.98275676.+	chr2	98275676	98275677	+	0	NA	"intron (NM_005735, intron 4 of 10)"	"intron (NM_005735, intron 4 of 10)"	4885	NM_005735	10120	Hs.98791	NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	"ARP1 actin-related protein 1 homolog B, centractin beta (yeast)"	protein-coding
chr9.8857443.-	chr9	8857443	8857444	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123497	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr15.74725803.+	chr15	74725803	74725804	+	0	NA	"intron (NM_003612, intron 1 of 13)"	CpG	198	NM_001146030	8482	Hs.24640	NM_001146029	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL	"semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)"	protein-coding
chr2.242530120.+	chr2	242530120	242530121	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	26796	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr1.5005203.+	chr1	5005203	5005204	+	0	NA	Intergenic	Intergenic	290098	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr20.33005259.-	chr20	33005259	33005260	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	48871	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr21.38403705.+	chr21	38403705	38403706	+	0	NA	Intergenic	AluJb|SINE|Alu	24842	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	DSCR6	RIPPLY3	Down syndrome critical region gene 6	protein-coding
chr17.20588547.-	chr17	20588547	20588548	-	0	NA	Intergenic	SVA_D|Other|Other	27212	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr19.50670095.-	chr19	50670095	50670096	-	0	NA	Intergenic	AluSg|SINE|Alu	3557	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr1.26778177.-	chr1	26778177	26778178	-	0	NA	"intron (NM_205861, intron 6 of 8)"	AluY|SINE|Alu	-19404	NM_205861	79947	Hs.369385	NM_001243564	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase	protein-coding
chr2.122878837.+	chr2	122878837	122878838	+	0	NA	Intergenic	AluY|SINE|Alu	365716	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr3.52918374.+	chr3	52918374	52918375	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13223	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr5.2401518.-	chr5	2401518	2401519	-	0	NA	Intergenic	AluY|SINE|Alu	-350251	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr6.157734065.+	chr6	157734065	157734066	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11188	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr7.129803691.-	chr7	129803691	129803692	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41647	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr2.202612447.-	chr2	202612447	202612448	-	0	NA	"intron (NM_020919, intron 8 of 33)"	AluY|SINE|Alu	-33448	NM_001135745	57679	Hs.621812	NM_001135745	ENSG00000003393	ALS2	ALS2CR6|ALSJ|IAHSP|PLSJ	amyotrophic lateral sclerosis 2 (juvenile)	protein-coding
chr20.61999727.-	chr20	61999727	61999728	-	0	NA	Intergenic	Intergenic	6979	NM_001256573	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr13.98795316.+	chr13	98795316	98795317	+	0	NA	promoter-TSS (NM_005766)	promoter-TSS (NM_005766)	-118	NM_005766	10160	Hs.403917	NM_001001715	ENSG00000152767	FARP1	CDEP|PLEKHC2|PPP1R75	"FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)"	protein-coding
chr10.120946126.-	chr10	120946126	120946127	-	0	NA	Intergenic	AluY|SINE|Alu	7781	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chrX.89718139.+	chrX	89718139	89718140	+	0	NA	Intergenic	AluY|SINE|Alu	541199	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	"TGFB-induced factor homeobox 2-like, X-linked"	protein-coding
chrX.130461470.+	chrX	130461470	130461471	+	0	NA	Intergenic	SVA_D|Other|Other	-38067	NM_001555	3547	Hs.22111	NM_001170961	ENSG00000147255	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	"immunoglobulin superfamily, member 1"	protein-coding
chr19.53979674.-	chr19	53979674	53979675	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8685	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr2.44294153.-	chr2	44294153	44294154	-	0	NA	Intergenic	SVA_D|Other|Other	71009	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr11.134479605.+	chr11	134479605	134479606	+	0	NA	Intergenic	Intergenic	173229	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr18.7139228.+	chr18	7139228	7139229	+	0	NA	Intergenic	AluY|SINE|Alu	-21415	NM_005559	284217	Hs.270364	NM_005559	ENSG00000101680	LAMA1	LAMA|S-LAM-alpha	"laminin, alpha 1"	protein-coding
chr2.97168912.-	chr2	97168912	97168913	-	0	NA	"intron (NR_026875, intron 1 of 3)"	"intron (NR_026875, intron 1 of 3)"	-4934	NR_026875	93082	Hs.149219	NR_026875	ENSG00000163121	NEURL3	LINCR	neuralized homolog 3 (Drosophila) pseudogene	pseudo
chr17.76381397.+	chr17	76381397	76381398	+	0	NA	"intron (NM_024419, intron 1 of 9)"	AluY|SINE|Alu	6662	NM_024419	9489	Hs.654671	NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
chr4.185655153.-	chr4	185655153	185655154	-	0	NA	"intron (NM_024629, intron 1 of 12)"	CpG	-133	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr14.105618907.+	chr14	105618907	105618908	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16254	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr11.100596535.+	chr11	100596535	100596536	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38128	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr2.131551965.-	chr2	131551965	131551966	-	0	NA	Intergenic	AluY|SINE|Alu	-38101	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr7.129327245.-	chr7	129327245	129327246	-	0	NA	"intron (NM_001040110, intron 4 of 10)"	AluSx1|SINE|Alu	-57326	NM_001040110	4899	Hs.654363	NM_001040110	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
chr2.129491287.+	chr2	129491287	129491288	+	0	NA	Intergenic	Intergenic	-415116	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr7.5703251.-	chr7	5703251	5703252	-	0	NA	"intron (NR_046834, intron 2 of 2)"	AluSg|SINE|Alu	-16841	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr8.141276699.+	chr8	141276699	141276700	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191162	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chrX.46794148.-	chrX	46794148	46794149	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22280	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr12.105629816.+	chr12	105629816	105629817	+	0	NA	"5' UTR (NM_018171, exon 1 of 21)"	"5' UTR (NM_018171, exon 1 of 21)"	192	NM_018171	55198	Hs.506603	NM_001251904	ENSG00000136044	APPL2	DIP13B	"adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2"	protein-coding
chr20.50013454.+	chr20	50013454	50013455	+	0	NA	"intron (NM_173091, intron 9 of 9)"	"intron (NM_173091, intron 9 of 9)"	56060	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	miscRNA
chr19.1252675.+	chr19	1252675	1252676	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4123	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr1.32679390.+	chr1	32679390	32679391	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4695	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr7.36192852.-	chr7	36192852	36192853	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	-16	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr4.53230939.+	chr4	53230939	53230940	+	0	NA	Intergenic	AluY|SINE|Alu	291820	NM_001134223	64854	Hs.7966	NM_001134223		USP46	-	ubiquitin specific peptidase 46	protein-coding
chr10.135031526.+	chr10	135031526	135031527	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12252	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr14.104095563.-	chr14	104095563	104095564	-	0	NA	promoter-TSS (NM_001130107)	promoter-TSS (NM_001130107)	-38	NM_005552	3831	Hs.657678	NM_001130107	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
chr12.66768118.+	chr12	66768118	66768119	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71783	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chrX.139520317.+	chrX	139520317	139520318	+	0	NA	Intergenic	AluSc|SINE|Alu	66908	NM_005634	6658	Hs.157429	NM_005634	ENSG00000134595	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
chr18.33709918.+	chr18	33709918	33709919	+	0	NA	promoter-TSS (NM_001242877)	promoter-TSS (NM_001242877)	81	NR_040110	55250	Hs.8739	NM_001242875	ENSG00000134759	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
chr1.235292043.-	chr1	235292043	235292044	-	0	NA	promoter-TSS (NR_002956)	promoter-TSS (NR_002956)	-213	NM_014765	9804	Hs.533192	NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding
chr16.53227233.+	chr16	53227233	53227234	+	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	138288	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr7.25058025.+	chr7	25058025	25058026	+	0	NA	Intergenic	SVA_F|Other|Other	-38265	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr1.54775795.-	chr1	54775795	54775796	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96184	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr16.88772901.+	chr16	88772901	88772902	+	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	10	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr19.42394304.+	chr19	42394304	42394305	+	0	NA	"intron (NM_198977, intron 4 of 27)"	AluJb|SINE|Alu	5858	NM_199002	9138	Hs.631550	NM_004706	ENSG00000076928	ARHGEF1	GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding
chrY.13478065.-	chrY	13478065	13478066	-	0	NA	Intergenic	CpG	-1055324	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr12.113494404.+	chr12	113494404	113494405	+	0	NA	Intergenic	CpG	-1258	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr1.38100485.+	chr1	38100485	38100486	+	0	NA	"5' UTR (NM_001242909, exon 1 of 8)"	"5' UTR (NM_001242909, exon 1 of 8)"	110	NM_001242910	284654	Hs.135015	NM_001038633	ENSG00000169218	RSPO1	CRISTIN3|RSPO	R-spondin 1	protein-coding
chr19.40696472.+	chr19	40696472	40696473	+	0	NA	Intergenic	AluSx|SINE|Alu	-1179	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr12.20930584.-	chr12	20930584	20930585	-	0	NA	Intergenic	LTR12C|LTR|ERV1	33054	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr21.27382884.-	chr21	27382884	27382885	-	0	NA	"intron (NM_001136016, intron 6 of 16)"	AluSx1|SINE|Alu	-129824	NM_001136016	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
chr2.96012316.-	chr2	96012316	96012317	-	0	NA	promoter-TSS (NM_001034914)	promoter-TSS (NM_001034914)	452	NM_001034914	30818	Hs.437376	NM_001034914	ENSG00000115041	KCNIP3	CSEN|DREAM|KCHIP3	"Kv channel interacting protein 3, calsenilin"	protein-coding
chr9.90885132.+	chr9	90885132	90885133	+	0	NA	Intergenic	AluJb|SINE|Alu	-118165	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr16.87799862.+	chr16	87799862	87799863	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-264	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr1.172502588.+	chr1	172502588	172502589	+	0	NA	"exon (NM_014283, exon 1 of 24)"	"exon (NM_014283, exon 1 of 24)"	271	NM_016227	51430	Hs.743437	NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
chr14.51521289.+	chr14	51521289	51521290	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluJb|SINE|Alu	41133	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr13.48030581.-	chr13	48030581	48030582	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544881	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr11.727842.+	chr11	727842	727843	+	0	NA	TTS (NM_022772)	TTS (NM_022772)	-19590	NM_006755	6888	Hs.438678	NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
chr6.24720962.-	chr6	24720962	24720963	-	0	NA	Intergenic	CpG	1559	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr6.38622773.-	chr6	38622773	38622774	-	0	NA	Intergenic	AluSp|SINE|Alu	14849	NM_001099272	114781	Hs.603858	NM_001099272	ENSG00000183826	BTBD9	dJ322I12.1	BTB (POZ) domain containing 9	protein-coding
chr21.35774206.+	chr21	35774206	35774207	+	0	NA	Intergenic	AluSc8|SINE|Alu	26457	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr1.16481216.+	chr1	16481216	16481217	+	0	NA	"intron (NM_004431, intron 1 of 16)"	AluSq2|SINE|Alu	1366	NM_004431	1969	Hs.171596	NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|ECK	EPH receptor A2	protein-coding
chr2.101589408.-	chr2	101589408	101589409	-	0	NA	"intron (NM_002518, intron 12 of 20)"	AluSg|SINE|Alu	29283	NM_000993	6160	Hs.469473	NM_000993	ENSG00000071082	RPL31	L31	ribosomal protein L31	protein-coding
chr1.40259982.+	chr1	40259982	40259983	+	0	NA	Intergenic	AluY|SINE|Alu	-5449	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr1.55483771.+	chr1	55483771	55483772	+	0	NA	Intergenic	AluSx1|SINE|Alu	19154	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr3.8721288.-	chr3	8721288	8721289	-	0	NA	Intergenic	Intergenic	27524	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr7.124427310.-	chr7	124427310	124427311	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3554	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chrX.53808250.-	chrX	53808250	53808251	-	0	NA	Intergenic	AluYb8|SINE|Alu	94553	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr18.74140102.-	chr18	74140102	74140103	-	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	-67044	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr2.222425830.-	chr2	222425830	222425831	-	0	NA	"intron (NM_004438, intron 3 of 17)"	AluY|SINE|Alu	-11180	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
chr21.11107011.-	chr21	11107011	11107012	-	0	NA	Intergenic	CpG	8074	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr5.170687195.-	chr5	170687195	170687196	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49093	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr7.158504088.+	chr7	158504088	158504089	+	0	NA	Intergenic	AluY|SINE|Alu	-6568	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr5.179373604.-	chr5	179373604	179373605	-	0	NA	Intergenic	AluY|SINE|Alu	38748	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr20.57581529.+	chr20	57581529	57581530	+	0	NA	"exon (NM_001336, exon 2 of 6)"	"exon (NM_001336, exon 2 of 6)"	780	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr16.65155414.+	chr16	65155414	65155415	+	0	NA	"intron (NM_001797, intron 1 of 12)"	CpG	505	NM_001797	1009	Hs.116471	NM_001797		CDH11	CAD11|CDHOB|OB|OSF-4	"cadherin 11, type 2, OB-cadherin (osteoblast)"	protein-coding
chr18.11959822.-	chr18	11959822	11959823	-	0	NA	Intergenic	SVA_D|Other|Other	21605	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr19.1045746.+	chr19	1045746	1045747	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5644	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr2.1751175.-	chr2	1751175	1751176	-	0	NA	Intergenic	Intergenic	2884	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr5.176851929.-	chr5	176851929	176851930	-	0	NA	Intergenic	AluY|SINE|Alu	1758	NM_001004106	2870	Hs.235116	NM_001004105	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
chr13.108435260.-	chr13	108435260	108435261	-	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	-84200	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr4.54103740.+	chr4	54103740	54103741	+	0	NA	"intron (NM_152540, intron 4 of 8)"	SVA_D|Other|Other	128502	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr11.44285421.+	chr11	44285421	44285422	+	0	NA	"3' UTR (NM_021926, exon 4 of 4)"	"3' UTR (NM_021926, exon 4 of 4)"	46295	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr19.50803065.-	chr19	50803065	50803066	-	0	NA	"intron (NM_001145809, intron 39 of 42)"	AluSz|SINE|Alu	-29569	NM_004977	3748	Hs.467146	NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	"potassium voltage-gated channel, Shaw-related subfamily, member 3"	protein-coding
chr17.19330401.+	chr17	19330401	19330402	+	0	NA	Intergenic	AluY|SINE|Alu	15910	NM_007148	7732	Hs.189482	NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
chr2.28635200.-	chr2	28635200	28635201	-	0	NA	"exon (NM_005253, exon 4 of 4)"	"exon (NM_005253, exon 4 of 4)"	-19421	NM_005253	2355	Hs.596972	NM_005253		FOSL2	FRA2	FOS-like antigen 2	protein-coding
chr3.126260566.-	chr3	126260566	126260567	-	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	-17192	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr11.105759246.+	chr11	105759246	105759247	+	0	NA	"intron (NM_000829, intron 6 of 16)"	AluYa5|SINE|Alu	133708	NM_032424	84437	Hs.266782	NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
chr3.60485368.+	chr3	60485368	60485369	+	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	751765	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr12.66582985.+	chr12	66582985	66582986	+	0	NA	promoter-TSS (NM_007199)	promoter-TSS (NM_007199)	7	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr18.71336756.-	chr18	71336756	71336757	-	0	NA	Intergenic	Intergenic	-344580	NR_038340	100505817	Hs.197042	NR_038340	ENSG00000261780	LOC100505817	-	uncharacterized LOC100505817	miscRNA
chr15.40365132.-	chr15	40365132	40365133	-	0	NA	Intergenic	Intergenic	-33155	NM_001003942	90427	Hs.591104	NM_001003940	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
chr1.39729539.-	chr1	39729539	39729540	-	0	NA	"intron (NM_012090, intron 7 of 94)"	AluY|SINE|Alu	145637	NM_015038	643314	Hs.658760	NM_015038	ENSG00000255103	KIAA0754	-	KIAA0754	protein-coding
chr7.158268182.-	chr7	158268182	158268183	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57323	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr9.38829820.+	chr9	38829820	38829821	+	0	NA	Intergenic	AluY|SINE|Alu	208735	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr12.51681489.-	chr12	51681489	51681490	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17287	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr12.56110299.-	chr12	56110299	56110300	-	0	NA	"non-coding (NR_037657, exon 1 of 3)"	"non-coding (NR_037657, exon 1 of 3)"	-223	NR_037656	2647	Hs.600940	NR_037656	ENSG00000135441	BLOC1S1	BLOS1|GCN5L1|MICoA|RT14	"biogenesis of lysosomal organelles complex-1, subunit 1"	protein-coding
chr11.66884086.+	chr11	66884086	66884087	+	0	NA	Intergenic	AluSx|SINE|Alu	-2654	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr18.77477323.+	chr18	77477323	77477324	+	0	NA	"intron (NM_001202504, intron 8 of 12)"	"intron (NM_001202504, intron 8 of 12)"	35893	NM_001202504	9150	Hs.734021	NM_001202504	ENSG00000060069	CTDP1	CCFDN|FCP1	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1"	protein-coding
chr1.14834344.+	chr1	14834344	14834345	+	0	NA	Intergenic	AluYc|SINE|Alu	-90869	NM_015209	23254	Hs.368823	NM_001017999	ENSG00000189337	KAZN	KAZ	"kazrin, periplakin interacting protein"	protein-coding
chr9.130734368.+	chr9	130734368	130734369	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8444	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr7.130332849.-	chr7	130332849	130332850	-	0	NA	"intron (NM_012133, intron 5 of 12)"	AluSc8|SINE|Alu	-20749	NM_012133	26958	Hs.6421	NM_012133		COPG2	2-COP	"coatomer protein complex, subunit gamma 2"	protein-coding
chr14.101679056.-	chr14	101679056	101679057	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142808	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chrX.19863023.-	chrX	19863023	19863024	-	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	-42721	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr7.151129105.-	chr7	151129105	151129106	-	0	NA	"intron (NM_144727, intron 3 of 3)"	"intron (NM_144727, intron 3 of 3)"	-1620	NR_037468	100500835		NR_037468		MIR3907	-	microRNA 3907	miscRNA
chr12.56394837.-	chr12	56394837	56394838	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3794	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr5.39649152.+	chr5	39649152	39649153	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223817	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr16.29422153.-	chr16	29422153	29422154	-	0	NA	Intergenic	AluSx|SINE|Alu	38513	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr6.126111922.-	chr6	126111922	126111923	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-13	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.101924965.-	chr2	101924965	101924966	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-213	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr7.26216471.-	chr7	26216471	26216472	-	0	NA	"intron (NM_004289, intron 1 of 3)"	SVA_A|Other|Other	-23942	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
chr17.4926605.+	chr17	4926605	4926606	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12122	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr22.30781361.+	chr22	30781361	30781362	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1941	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr16.86635851.+	chr16	86635851	86635852	+	0	NA	Intergenic	AluY|SINE|Alu	23736	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr19.23432235.+	chr19	23432235	23432236	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	937	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr10.104255189.-	chr10	104255189	104255190	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7323	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr3.88595881.+	chr3	88595881	88595882	+	0	NA	Intergenic	AluSc8|SINE|Alu	-396865	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr9.137200950.+	chr9	137200950	137200951	+	0	NA	Intergenic	Intergenic	-17366	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr3.132441738.+	chr3	132441738	132441739	+	0	NA	promoter-TSS (NM_153240)	promoter-TSS (NM_153240)	-435	NR_037804	100532724	Hs.511991	NR_037804		NPHP3-ACAD11	-	NPHP3-ACAD11 readthrough	miscRNA
chr8.41908655.+	chr8	41908655	41908656	+	0	NA	"intron (NM_001099412, intron 1 of 17)"	CpG	850	NM_006766	7994	Hs.491577	NM_001099412	ENSG00000083168	KAT6A	MOZ|MYST3|RUNXBP2|ZC2HC6A|ZNF220	K(lysine) acetyltransferase 6A	protein-coding
chr20.60832996.+	chr20	60832996	60832997	+	0	NA	"intron (NM_014835, intron 2 of 13)"	AluSx1|SINE|Alu	19416	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr17.18178971.+	chr17	18178971	18178972	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14547	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr3.32863309.-	chr3	32863309	32863310	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3799	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr3.49395134.+	chr3	49395134	49395135	+	0	NA	"exon (NM_000581, exon 2 of 2)"	"exon (NM_000581, exon 2 of 2)"	657	NM_201397	2876	Hs.76686	NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
chr6.157008377.+	chr6	157008377	157008378	+	0	NA	Intergenic	CpG	-90687	NM_017519	57492	Hs.744461	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
chr1.109995463.+	chr1	109995463	109995464	+	0	NA	Intergenic	AluY|SINE|Alu	-13637	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr9.138663336.-	chr9	138663336	138663337	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69305	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chrX.144902929.+	chrX	144902929	144902930	+	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	63	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr19.47006076.+	chr19	47006076	47006077	+	0	NA	"intron (NM_001205281, intron 3 of 3)"	AluY|SINE|Alu	-6907	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
chr2.172379813.-	chr2	172379813	172379814	-	0	NA	"intron (NM_001127383, intron 1 of 2)"	CpG	-947	NM_001127383	79901	Hs.221941	NM_001127383	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
chr1.178513352.+	chr1	178513352	178513353	+	0	NA	"intron (NR_033186, intron 1 of 2)"	AluSg|SINE|Alu	1421	NR_033186	400798	Hs.668085	NM_207467	ENSG00000184909	C1orf220	-	chromosome 1 open reading frame 220	miscRNA
chr3.171911881.+	chr3	171911881	171911882	+	0	NA	"intron (NM_022763, intron 3 of 25)"	AluY|SINE|Alu	153537	NM_001135095	64778	Hs.159430	NM_001135095	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
chr15.90776699.-	chr15	90776699	90776700	-	0	NA	promoter-TSS (NM_001013657)	promoter-TSS (NM_001013657)	-580	NM_006384	10519	Hs.715556	NM_006384		CIB1	CIB|KIP|KIP1|SIP2-28	calcium and integrin binding 1 (calmyrin)	protein-coding
chr16.723831.-	chr16	723831	723832	-	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	2244	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr11.3224480.+	chr11	3224480	3224481	+	0	NA	Intergenic	Intergenic	-15082	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr22.20204035.+	chr22	20204035	20204036	+	0	NA	Intergenic	AluSx1|SINE|Alu	10180	NR_026919	150197	Hs.635544	NM_152508		LOC150197	-	uncharacterized LOC150197	miscRNA
chr7.1474494.-	chr7	1474494	1474495	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24615	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr15.100080084.+	chr15	100080084	100080085	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26049	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr6.105414629.+	chr6	105414629	105414630	+	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	9706	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr16.3646188.-	chr16	3646188	3646189	-	0	NA	"exon (NM_032444, exon 8 of 15)"	"exon (NM_032444, exon 8 of 15)"	-15397	NM_032444	84464	Hs.143681	NM_032444	ENSG00000188827	SLX4	BTBD12|FANCP|MUS312	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding
chr1.195321148.-	chr1	195321148	195321149	-	0	NA	Intergenic	AluY|SINE|Alu	-1230463	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr4.100009970.+	chr4	100009970	100009971	+	0	NA	promoter-TSS (NM_000671)	promoter-TSS (NM_000671)	-38	NR_037884	100507053	Hs.635084	NR_037884	ENSG00000246090	LOC100507053	-	uncharacterized LOC100507053	miscRNA
chr3.95669696.+	chr3	95669696	95669697	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267659	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr22.46931202.+	chr22	46931202	46931203	+	0	NA	"exon (NM_014246, exon 1 of 35)"	"exon (NM_014246, exon 1 of 35)"	1865	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr7.107676928.+	chr7	107676928	107676929	+	0	NA	"intron (NM_007356, intron 30 of 33)"	AluSp|SINE|Alu	-33124	NM_002291	3912	Hs.650585	NM_002291	ENSG00000091136	LAMB1	CLM	"laminin, beta 1"	protein-coding
chr20.61021240.-	chr20	61021240	61021241	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18611	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr9.137200932.-	chr9	137200932	137200933	-	0	NA	Intergenic	Intergenic	17384	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr11.2051356.-	chr11	2051356	2051357	-	0	NA	Intergenic	Intergenic	32291	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr15.23811452.-	chr15	23811452	23811453	-	0	NA	"exon (NM_005664, exon 1 of 1)"	"exon (NM_005664, exon 1 of 1)"	-998	NM_005664	7681	Hs.679587	NM_005664	ENSG00000179455	MKRN3	D15S9|RNF63|ZFP127|ZNF127	makorin ring finger protein 3	protein-coding
chr3.133028691.-	chr3	133028691	133028692	-	0	NA	"intron (NM_023943, intron 3 of 5)"	AluYa5|SINE|Alu	90099	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|LIFL-L|PHAKOSIN	"beaded filament structural protein 2, phakinin"	protein-coding
chr9.138800099.-	chr9	138800099	138800100	-	0	NA	Intergenic	CpG-27310	1094	NM_015447	157922	Hs.522493	NM_015447	ENSG00000130559	CAMSAP1	PRO2405|bA100C15.1	calmodulin regulated spectrin-associated protein 1	protein-coding
chr3.149374896.-	chr3	149374896	149374897	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-916	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr1.236252211.-	chr1	236252211	236252212	-	0	NA	Intergenic	AluY|SINE|Alu	23730	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr10.71044949.-	chr10	71044949	71044950	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15193	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr7.1587883.+	chr7	1587883	1587884	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8183	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr1.40953664.+	chr1	40953664	40953665	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10362	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr13.31914221.-	chr13	31914221	31914222	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-140109	NM_194318	145173	Hs.13205	NM_194318	ENSG00000187676	B3GALTL	B3GLCT|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	"beta 1,3-galactosyltransferase-like"	protein-coding
chr16.68889481.-	chr16	68889481	68889482	-	0	NA	"intron (NM_024562, intron 1 of 17)"	AluSx|SINE|Alu	-11972	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
chr1.117342216.+	chr1	117342216	117342217	+	0	NA	Intergenic	AluY|SINE|Alu	45130	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr4.186887702.-	chr4	186887702	186887703	-	0	NA	Intergenic	AluSx1|SINE|Alu	9832	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr10.131769834.-	chr10	131769834	131769835	-	0	NA	Intergenic	CpG-3433	7743	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr12.56394827.-	chr12	56394827	56394828	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3784	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr10.103893027.+	chr10	103893027	103893028	+	0	NA	"intron (NM_015062, intron 1 of 13)"	CpG	240	NM_015062	23082	Hs.533551	NM_015062	ENSG00000148840	PPRC1	PRC|RP11-302K17.6	"peroxisome proliferator-activated receptor gamma, coactivator-related 1"	protein-coding
chr6.142795201.+	chr6	142795201	142795202	+	0	NA	Intergenic	AluSc|SINE|Alu	163772	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr11.33476395.-	chr11	33476395	33476396	-	0	NA	Intergenic	AluY|SINE|Alu	87482	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549-like	protein-coding
chr1.79749362.-	chr1	79749362	79749363	-	0	NA	Intergenic	AluSx|SINE|Alu	276867	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr3.102974035.-	chr3	102974035	102974036	-	0	NA	Intergenic	SVA_D|Other|Other	-820176	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr22.21635806.-	chr22	21635806	21635807	-	0	NA	promoter-TSS (NR_024583)	promoter-TSS (NR_024583)	908	NR_024583	29797	Hs.735161	NR_024583		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin-like 8 pseudogene	pseudo
chr2.99438507.-	chr2	99438507	99438508	-	0	NA	"exon (NM_207362, exon 7 of 10)"	"exon (NM_207362, exon 7 of 10)"	90918	NM_012214	11320	Hs.177576	NM_001160154	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A"	protein-coding
chr7.1587796.+	chr7	1587796	1587797	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8270	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr5.114712438.+	chr5	114712438	114712439	+	0	NA	Intergenic	AluYc3|SINE|Alu	-79980	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr2.224254340.-	chr2	224254340	224254341	-	0	NA	Intergenic	MER49|LTR|ERV1	-212877	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
chr19.3220533.+	chr19	3220533	3220534	+	0	NA	Intergenic	AluSz|SINE|Alu	-4168	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr7.134458687.+	chr7	134458687	134458688	+	0	NA	Intergenic	AluSg|SINE|Alu	-5477	NM_004342	800	Hs.490203	NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
chr9.105850366.+	chr9	105850366	105850367	+	0	NA	Intergenic	AluYc|SINE|Alu	92773	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr19.7123270.-	chr19	7123270	7123271	-	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	-53799	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr22.21042904.-	chr22	21042904	21042905	-	0	NA	promoter-TSS (NR_024592)	promoter-TSS (NR_024592)	939	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr20.17960348.+	chr20	17960348	17960349	+	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	10586	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chrX.54867425.+	chrX	54867425	54867426	+	0	NA	Intergenic	Intergenic	26622	NR_002953	677799	Hs.679783	NR_002953		SNORA11	SNORA11A|U107	"small nucleolar RNA, H/ACA box 11"	snoRNA
chr6.168209507.-	chr6	168209507	168209508	-	0	NA	Intergenic	AluSq|SINE|Alu	11968	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr17.4926579.-	chr17	4926579	4926580	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12148	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr11.66458825.-	chr11	66458825	66458826	-	0	NA	"exon (NM_006946, exon 26 of 37)"	"exon (NM_006946, exon 26 of 37)"	13550	NM_031492	83759	Hs.618713	NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
chr17.36259984.+	chr17	36259984	36259985	+	0	NA	Intergenic	AluYc|SINE|Alu	-15621	NR_024178	284100	Hs.434159	NM_001129906	ENSG00000267671	LOC284100	-	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene"	pseudo
chr14.105618893.+	chr14	105618893	105618894	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16268	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr18.67955977.-	chr18	67955977	67955978	-	0	NA	promoter-TSS (NM_004232)	promoter-TSS (NM_004232)	160	NM_004232	9306	Hs.44439	NM_004232	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
chr3.112807967.+	chr3	112807967	112807968	+	0	NA	Intergenic	AluYc|SINE|Alu	-69412	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr3.46709788.-	chr3	46709788	46709789	-	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	-9111	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr7.45750415.+	chr7	45750415	45750416	+	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	58202	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr16.68233575.+	chr16	68233575	68233576	+	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	36561	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr20.37464567.-	chr20	37464567	37464568	-	0	NA	"5' UTR (NM_015568, exon 2 of 11)"	"5' UTR (NM_015568, exon 2 of 11)"	-30219	NM_001172735	26051	Hs.45719	NM_001172735	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	"protein phosphatase 1, regulatory subunit 16B"	protein-coding
chr17.7561731.-	chr17	7561731	7561732	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7477	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr8.41166038.-	chr8	41166038	41166039	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-952	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr1.54775683.+	chr1	54775683	54775684	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96296	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr6.163752471.-	chr6	163752471	163752472	-	0	NA	Intergenic	Intergenic	6966	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr15.89721772.+	chr15	89721772	89721773	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43150	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr20.19955811.+	chr20	19955811	19955812	+	0	NA	"exon (NM_001242581, exon 8 of 12)"	"exon (NM_001242581, exon 8 of 12)"	-42123	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr16.33730716.-	chr16	33730716	33730717	-	0	NA	Intergenic	CpG	167473	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76	-	"RNA, U6 small nuclear 76"	snRNA
chr12.133366773.-	chr12	133366773	133366774	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28322	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr5.34008269.+	chr5	34008269	34008270	+	0	NA	promoter-TSS (NM_203382)	promoter-TSS (NM_203382)	-49	NM_203382	23600	Hs.508343	NM_001167595	ENSG00000242110	AMACR	AMACRD|CBAS4|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
chr20.50589992.-	chr20	50589992	50589993	-	0	NA	Intergenic	AluSc|SINE|Alu	170944	NM_020436	57167	Hs.517113	NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|ZNF797|dJ1112F19.1	sal-like 4 (Drosophila)	protein-coding
chr2.43253941.+	chr2	43253941	43253942	+	0	NA	Intergenic	Intergenic	199804	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr19.14156329.+	chr19	14156329	14156330	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13642	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr19.4065717.-	chr19	4065717	4065718	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1099	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr20.13619403.+	chr20	13619403	13619404	+	0	NA	"intron (NM_017714, intron 1 of 13)"	CpG	180	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr19.9311230.-	chr19	9311230	9311231	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14317	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr5.112263716.+	chr5	112263716	112263717	+	0	NA	Intergenic	AluY|SINE|Alu	-5685	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr4.190662142.+	chr4	190662142	190662143	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199832	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr4.1400155.+	chr4	1400155	1400156	+	0	NA	Intergenic	CpG	14815	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr4.166248568.+	chr4	166248568	166248569	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-250	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr10.17622275.-	chr10	17622275	17622276	-	0	NA	Intergenic	AluY|SINE|Alu	-37098	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr22.42085639.+	chr22	42085639	42085640	+	0	NA	promoter-TSS (NM_001142964)	promoter-TSS (NM_001142964)	-726	NM_005008	4809	Hs.182255	NM_001003796	ENSG00000100138	NHP2L1	15.5K|FA-1|FA1|NHPX|OTK27|SNRNP15-5|SNU13|SPAG12|SSFA1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	protein-coding
chr3.195928191.+	chr3	195928191	195928192	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSx1|SINE|Alu	10109	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr11.69189631.+	chr11	69189631	69189632	+	0	NA	Intergenic	Intergenic	128009	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr16.30960465.-	chr16	30960465	30960466	-	0	NA	promoter-TSS (NM_152288)	promoter-TSS (NM_152288)	-60	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr8.23605665.-	chr8	23605665	23605666	-	0	NA	Intergenic	Intergenic	41554	NM_001136271	137814	Hs.532654	NM_001136271	ENSG00000180053	NKX2-6	CSX2|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
chr1.114299514.-	chr1	114299514	114299515	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2263	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr13.100737630.+	chr13	100737630	100737631	+	0	NA	Intergenic	AluY|SINE|Alu	-3639	NM_000282	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr22.38166145.+	chr22	38166145	38166146	+	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	23904	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr13.77954531.-	chr13	77954531	77954532	-	0	NA	Intergenic	AluSc|SINE|Alu	53354	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr13.23572006.+	chr13	23572006	23572007	+	0	NA	Intergenic	AluY|SINE|Alu	-99686	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	"brain abundant, membrane attached signal protein 1 pseudogene 1"	pseudo
chr7.79083322.+	chr7	79083322	79083323	+	0	NA	promoter-TSS (NR_038344)	promoter-TSS (NR_038344)	46	NR_038343	100505881	Hs.31474	NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	miscRNA
chr5.177735767.-	chr5	177735767	177735768	-	0	NA	"intron (NM_173465, intron 2 of 28)"	"intron (NM_173465, intron 2 of 28)"	75964	NM_153373	85007	Hs.248746	NM_032921	ENSG00000175309	AGXT2L2	PHLU	alanine-glyoxylate aminotransferase 2-like 2	protein-coding
chr8.41166032.+	chr8	41166032	41166033	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	958	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr4.5981961.+	chr4	5981961	5981962	+	0	NA	Intergenic	Intergenic	-56906	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	-	microRNA 378d-1	miscRNA
chr13.40930738.-	chr13	40930738	40930739	-	0	NA	"intron (NR_024506, intron 5 of 5)"	L1PA2|LINE|L1	-124405	NR_024507	646982	Hs.287664	NR_024505		LINC00598	TTL	long intergenic non-protein coding RNA 598	miscRNA
chr4.78739984.+	chr4	78739984	78739985	+	0	NA	"intron (NM_144571, intron 1 of 11)"	CpG	560	NM_144571	246175	Hs.592519	NM_144571	ENSG00000138767	CNOT6L	CCR4b	"CCR4-NOT transcription complex, subunit 6-like"	protein-coding
chr1.85708385.-	chr1	85708385	85708386	-	0	NA	Intergenic	AluSx1|SINE|Alu	-16970	NM_198077	148423	Hs.26226	NM_198077		C1orf52	RP11-234D19.1|gm117	chromosome 1 open reading frame 52	protein-coding
chr10.133203405.-	chr10	133203405	133203406	-	0	NA	Intergenic	Intergenic	93421	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr11.92637337.+	chr11	92637337	92637338	+	0	NA	Intergenic	AluY|SINE|Alu	-65452	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr17.19628227.-	chr17	19628227	19628228	-	0	NA	Intergenic	CpG	8184	NM_001256663	146802	Hs.126830	NM_001099646	ENSG00000180638	SLC47A2	MATE2|MATE2-B|MATE2-K|MATE2K	"solute carrier family 47, member 2"	protein-coding
chr2.10198565.+	chr2	10198565	10198566	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14193	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr4.26589740.-	chr4	26589740	26589741	-	0	NA	"intron (NM_018317, intron 1 of 20)"	AluY|SINE|Alu	-4194	NM_018317	55296	Hs.479403	NM_018317	ENSG00000109680	TBC1D19	-	"TBC1 domain family, member 19"	protein-coding
chr20.1317836.+	chr20	1317836	1317837	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-7957	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr4.141563268.+	chr4	141563268	141563269	+	0	NA	"non-coding (NR_077215, exon 1 of 1)"	"non-coding (NR_077215, exon 1 of 1)"	966	NR_077215	644962	Hs.676500	NR_077215		TNRC18P1	-	TNRC18P1	pseudo
chr10.88411557.-	chr10	88411557	88411558	-	0	NA	Intergenic	Intergenic	2757	NM_001030015	94233	Hs.283922	NM_001030015	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
chr5.1494502.-	chr5	1494502	1494503	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29574	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr2.240371679.-	chr2	240371679	240371680	-	0	NA	Intergenic	SVA_D|Other|Other	49036	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr17.65487401.-	chr17	65487401	65487402	-	0	NA	"intron (NM_012417, intron 1 of 8)"	"intron (NM_012417, intron 1 of 8)"	-114004	NM_012417	26207	Hs.591185	NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	"phosphatidylinositol transfer protein, cytoplasmic 1"	protein-coding
chr5.178657983.-	chr5	178657983	178657984	-	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	-114448	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr18.73357746.-	chr18	73357746	73357747	-	0	NA	Intergenic	L2|LINE|L2	218157	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr5.17207785.+	chr5	17207785	17207786	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9147	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr7.36403839.-	chr7	36403839	36403840	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2943	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr8.98771852.+	chr8	98771852	98771853	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15957	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chrX.53111593.-	chrX	53111593	53111594	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-51	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr3.195603876.+	chr3	195603876	195603877	+	0	NA	"intron (NM_001010938, intron 9 of 14)"	"intron (NM_001010938, intron 9 of 14)"	18556	NM_001010938	10188	Hs.518513	NM_001010938	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	"tyrosine kinase, non-receptor, 2"	protein-coding
chrX.153657075.-	chrX	153657075	153657076	-	0	NA	promoter-TSS (NM_001183)	promoter-TSS (NM_001183)	-97	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chrX.69654751.-	chrX	69654751	69654752	-	0	NA	Intergenic	Intergenic	9954	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr11.57435435.+	chr11	57435435	57435436	+	0	NA	promoter-TSS (NM_015457)	promoter-TSS (NM_015457)	-39	NM_015457	25921	Hs.27239	NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	"zinc finger, DHHC-type containing 5"	protein-coding
chr8.128328698.-	chr8	128328698	128328699	-	0	NA	Intergenic	Intergenic	99159	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr18.43754111.+	chr18	43754111	43754112	+	0	NA	"5' UTR (NM_145055, exon 1 of 5)"	"5' UTR (NM_145055, exon 1 of 5)"	123	NM_145055	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr7.5582599.-	chr7	5582599	5582600	-	0	NA	Intergenic	Intergenic	12367	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr17.79611137.-	chr17	79611137	79611138	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1788	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr11.63715944.+	chr11	63715944	63715945	+	0	NA	"intron (NM_024771, intron 3 of 7)"	AluY|SINE|Alu	9502	NM_024771	79829	Hs.523753	NM_024771	ENSG00000110583	NAA40	NAT11|PATT1	"N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)"	protein-coding
chr2.20424100.+	chr2	20424100	20424101	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	827	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr7.157262177.-	chr7	157262177	157262178	-	0	NA	Intergenic	Intergenic	-104937	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr22.49969307.-	chr22	49969307	49969308	-	0	NA	Intergenic	Intergenic	-81883	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr13.114899242.+	chr13	114899242	114899243	+	0	NA	Intergenic	Intergenic	-1147	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr3.128194212.+	chr3	128194212	128194213	+	0	NA	Intergenic	Intergenic	-8121	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr8.143373412.+	chr8	143373412	143373413	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93695	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr1.54953570.+	chr1	54953570	54953571	+	0	NA	Intergenic	Intergenic	-60237	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr12.107112622.+	chr12	107112622	107112623	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34144	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr5.76691224.+	chr5	76691224	76691225	+	0	NA	"intron (NM_001029853, intron 9 of 20)"	AluY|SINE|Alu	97108	NM_018268	55255	Hs.482573	NM_018268		WDR41	-	WD repeat domain 41	protein-coding
chr17.2731936.-	chr17	2731936	2731937	-	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	-32204	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr22.25817179.+	chr22	25817179	25817180	+	0	NA	Intergenic	CpG	-26875	NR_033734	1416	Hs.571835	NR_033733	ENSG00000100058	CRYBB2P1	CRYB2B	"crystallin, beta B2 pseudogene 1"	pseudo
chrX.91037190.+	chrX	91037190	91037191	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2930	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr22.18532567.-	chr22	18532567	18532568	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20416	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr7.1547597.+	chr7	1547597	1547598	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3579	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr8.41166078.+	chr8	41166078	41166079	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	912	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr4.185174149.-	chr4	185174149	185174150	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35035	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr10.120946150.-	chr10	120946150	120946151	-	0	NA	Intergenic	AluY|SINE|Alu	7805	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr10.91295830.+	chr10	91295830	91295831	+	0	NA	promoter-TSS (NM_213606)	promoter-TSS (NM_213606)	-517	NM_213606	387700	Hs.530338	NM_213606	ENSG00000152779	SLC16A12	CJMG|MCT12	"solute carrier family 16, member 12 (monocarboxylic acid transporter 12)"	protein-coding
chr1.157015719.-	chr1	157015719	157015720	-	0	NA	promoter-TSS (NM_014784)	promoter-TSS (NM_014784)	557	NM_014784	9826	Hs.516954	NM_014784	ENSG00000132694	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding
chrX.9707490.-	chrX	9707490	9707491	-	0	NA	"intron (NM_000273, intron 8 of 8)"	"intron (NM_000273, intron 8 of 8)"	-26515	NM_000273	4935	Hs.74124	NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
chr2.43253945.+	chr2	43253945	43253946	+	0	NA	Intergenic	Intergenic	199800	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr6.122006935.+	chr6	122006935	122006936	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250190	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr7.128141954.+	chr7	128141954	128141955	+	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	25171	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr19.8174196.-	chr19	8174196	8174197	-	0	NA	"exon (NM_032447, exon 35 of 63)"	"exon (NM_032447, exon 35 of 63)"	-38189	NM_032447	84467	Hs.370362	NM_032447	ENSG00000142449	FBN3	-	fibrillin 3	protein-coding
chr9.74464949.-	chr9	74464949	74464950	-	0	NA	Intergenic	AluY|SINE|Alu	-61199	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr16.89034185.+	chr16	89034185	89034186	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9319	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr4.8651900.-	chr4	8651900	8651901	-	0	NA	Intergenic	Intergenic	-57513	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr6.1604608.-	chr6	1604608	1604609	-	0	NA	Intergenic	CpG	6073	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr7.50673277.-	chr7	50673277	50673278	-	0	NA	"intron (NM_001001549, intron 10 of 14)"	"intron (NM_001001549, intron 10 of 14)"	40123	NM_001082971	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
chr11.9243434.-	chr11	9243434	9243435	-	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	-43439	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr9.86597329.+	chr9	86597329	86597330	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1692	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr7.130418512.-	chr7	130418512	130418513	-	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	-376	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr11.3216802.+	chr11	3216802	3216803	+	0	NA	Intergenic	Intergenic	-22760	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr8.124054200.+	chr8	124054200	124054201	+	0	NA	"intron (NM_024295, intron 1 of 7)"	CpG	463	NM_024295	79139	Hs.241576	NM_001134671	ENSG00000136986	DERL1	DER-1|DER1	derlin 1	protein-coding
chr2.106682186.+	chr2	106682186	106682187	+	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	73	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr19.45678472.-	chr19	45678472	45678473	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3029	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr19.33557628.+	chr19	33557628	33557629	+	0	NA	Intergenic	Intergenic	-1804	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr10.11936709.+	chr10	11936709	11936710	+	0	NA	promoter-TSS (NR_038222)	promoter-TSS (NR_038222)	0	NR_038222	219731	Hs.576787	NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	miscRNA
chr9.123743129.+	chr9	123743129	123743130	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51678	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr10.127207239.+	chr10	127207239	127207240	+	0	NA	Intergenic	SVA_D|Other|Other	-55701	NR_023362	100169752	Hs.652647	NR_023362	ENSG00000237675	LOC100169752	-	uncharacterized LOC100169752	miscRNA
chr19.42817564.-	chr19	42817564	42817565	-	0	NA	promoter-TSS (NM_173633)	promoter-TSS (NM_173633)	-87	NM_173633	284339	Hs.382075	NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
chr15.98810319.+	chr15	98810319	98810320	+	0	NA	Intergenic	AluSz|SINE|Alu	247292	NM_182562	283777	Hs.668070	NM_182562	ENSG00000185087	FAM169B	-	"family with sequence similarity 169, member B"	protein-coding
chr20.18673636.+	chr20	18673636	18673637	+	0	NA	"intron (NM_080820, intron 4 of 5)"	AluSz|SINE|Alu	100990	NR_026884	29075	Hs.584899	NM_014162	ENSG00000179935	LINC00652	HSPC072	long intergenic non-protein coding RNA 652	miscRNA
chr14.69283104.+	chr14	69283104	69283105	+	0	NA	Intergenic	CpG	-20144	NM_001244701	677	Hs.85155	NM_001244698	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
chr12.129892175.+	chr12	129892175	129892176	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496037	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr3.48028092.-	chr3	48028092	48028093	-	0	NA	"intron (NM_002375, intron 2 of 18)"	AluSz6|SINE|Alu	-102677	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr19.58125554.-	chr19	58125554	58125555	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	276	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr19.47628021.-	chr19	47628021	47628022	-	0	NA	Intergenic	AluY|SINE|Alu	6059	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr13.31023984.-	chr13	31023984	31023985	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16097	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr18.74451922.+	chr18	74451922	74451923	+	0	NA	Intergenic	Intergenic	82329	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr1.20813351.+	chr1	20813351	20813352	+	0	NA	promoter-TSS (NM_018584)	promoter-TSS (NM_018584)	-623	NM_018584	55450	Hs.731383	NM_018584	ENSG00000162545	CAMK2N1	PRO1489|RP11-401M16.1	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding
chr22.38336404.+	chr22	38336404	38336405	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13250	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr16.11953965.+	chr16	11953965	11953966	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8523	NM_015659	26156	Hs.401842	NM_015659	ENSG00000171490	RSL1D1	CSIG|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
chr11.2213942.+	chr11	2213942	2213943	+	0	NA	Intergenic	Intergenic	19649	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr9.20614249.+	chr9	20614249	20614250	+	0	NA	"intron (NM_004529, intron 2 of 10)"	AluSq2|SINE|Alu	8265	NM_004529	4300	Hs.591085	NM_004529		MLLT3	AF9|YEATS3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3"	protein-coding
chr1.225619152.+	chr1	225619152	225619153	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2595	NM_194442	3930	Hs.735694	NM_002296	ENSG00000143815	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
chr2.240402075.+	chr2	240402075	240402076	+	0	NA	Intergenic	Intergenic	-79432	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr4.48016922.+	chr4	48016922	48016923	+	0	NA	Intergenic	AluY|SINE|Alu	-1869	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr7.821227.+	chr7	821227	821228	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33967	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chrX.48871377.-	chrX	48871377	48871378	-	0	NA	Intergenic	AluY|SINE|Alu	12702	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr19.12606220.-	chr19	12606220	12606221	-	0	NA	Intergenic	CpG	10588	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr10.67804033.+	chr10	67804033	67804034	+	0	NA	"intron (NM_013266, intron 15 of 17)"	AluSx|SINE|Alu	-881759	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
chr1.32122122.-	chr1	32122122	32122123	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11284	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr18.77627547.-	chr18	77627547	77627548	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3879	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr6.42510169.-	chr6	42510169	42510170	-	0	NA	Intergenic	AluY|SINE|Alu	21591	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chrY.9930629.-	chrY	9930629	9930630	-	0	NA	Intergenic	CpG	-182222	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr22.50508414.-	chr22	50508414	50508415	-	0	NA	"intron (NM_015166, intron 9 of 11)"	AluSq10|SINE|Alu	-15367	NM_139202	23209	Hs.517729	NM_015166	ENSG00000100427	MLC1	LVM|MLC|VL	megalencephalic leukoencephalopathy with subcortical cysts 1	protein-coding
chr2.131100753.+	chr2	131100753	131100754	+	0	NA	promoter-TSS (NM_032357)	promoter-TSS (NM_032357)	264	NM_033416	92856	Hs.91579	NM_033416	ENSG00000136718	IMP4	BXDC4	"IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)"	protein-coding
chr2.95828004.+	chr2	95828004	95828005	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2741	NM_032788	84874	Hs.655109	NM_032788	ENSG00000144026	ZNF514	-	zinc finger protein 514	protein-coding
chr1.248028215.+	chr1	248028215	248028216	+	0	NA	"exon (NM_015431, exon 3 of 6)"	"exon (NM_015431, exon 3 of 6)"	7714	NM_015431	25893	Hs.269151	NM_015431		TRIM58	BIA2	tripartite motif containing 58	protein-coding
chr1.212898488.+	chr1	212898488	212898489	+	0	NA	Intergenic	SVA_B|Other|Other	-25161	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr12.30327118.+	chr12	30327118	30327119	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389426	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr2.125181217.-	chr2	125181217	125181218	-	0	NA	"intron (NM_130773, intron 4 of 23)"	AluYc|SINE|Alu	-398353	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr17.71108216.-	chr17	71108216	71108217	-	0	NA	Intergenic	AluY|SINE|Alu	19363	NM_001159770	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr1.79749353.+	chr1	79749353	79749354	+	0	NA	Intergenic	AluSx|SINE|Alu	-276858	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr17.67192581.+	chr17	67192581	67192582	+	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	48375	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chr16.17617327.+	chr16	17617327	17617328	+	0	NA	Intergenic	AluSz|SINE|Alu	-52589	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr11.1158832.-	chr11	1158832	1158833	-	0	NA	Intergenic	Intergenic	-83957	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr7.56109597.-	chr7	56109597	56109598	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9671	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr6.89377993.-	chr6	89377993	89377994	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295355	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr22.22259542.-	chr22	22259542	22259543	-	0	NA	Intergenic	Intergenic	37572	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr1.153961793.+	chr1	153961793	153961794	+	0	NA	Intergenic	AluY|SINE|Alu	-1446	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr3.53225147.-	chr3	53225147	53225148	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29924	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr22.29760756.-	chr22	29760756	29760757	-	0	NA	"intron (NM_001127, intron 2 of 22)"	AluSx|SINE|Alu	-23816	NM_001127	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	"adaptor-related protein complex 1, beta 1 subunit"	protein-coding
chrX.129097385.-	chrX	129097385	129097386	-	0	NA	Intergenic	Intergenic	41779	NM_021946	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
chr2.198058481.-	chr2	198058481	198058482	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117040	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr3.137433453.+	chr3	137433453	137433454	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-49681	NM_004189	8403	Hs.248184	NM_004189		SOX14	SOX28	SRY (sex determining region Y)-box 14	protein-coding
chr15.75115990.-	chr15	75115990	75115991	-	0	NA	"exon (NM_021819, exon 12 of 14)"	"exon (NM_021819, exon 12 of 14)"	2961	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII	complexin 3	protein-coding
chr10.104209686.+	chr10	104209686	104209687	+	0	NA	TTS (NM_024886)	TTS (NM_024886)	112	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr4.184688241.+	chr4	184688241	184688242	+	0	NA	Intergenic	AluY|SINE|Alu	107821	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY	trafficking protein particle complex 11	protein-coding
chr19.35368089.-	chr19	35368089	35368090	-	0	NA	Intergenic	AluY|SINE|Alu	-21758	NR_046222	100652909	Hs.374015	NR_046222		LOC100652909	-	uncharacterized LOC100652909	miscRNA
chr8.86574494.+	chr8	86574494	86574495	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	248	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr3.52030317.-	chr3	52030317	52030318	-	0	NA	promoter-TSS (NM_000992)	promoter-TSS (NM_000992)	359	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
chr10.38249301.+	chr10	38249301	38249302	+	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	16152	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chr12.77339561.+	chr12	77339561	77339562	+	0	NA	Intergenic	AluY|SINE|Alu	-66762	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr3.107646773.-	chr3	107646773	107646774	-	0	NA	"non-coding (NR_015394, exon 3 of 3)"	"non-coding (NR_015394, exon 3 of 3)"	-44721	NR_015394	285205	Hs.737218	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	miscRNA
chr4.95481978.-	chr4	95481978	95481979	-	0	NA	"intron (NM_001256427, intron 3 of 14)"	AluY|SINE|Alu	-108970	NM_001011515	10611	Hs.732677	NM_001011513	ENSG00000163110	PDLIM5	ENH|ENH1|LIM	PDZ and LIM domain 5	protein-coding
chr7.5345669.-	chr7	5345669	5345670	-	0	NA	TTS (NM_001080495)	TTS (NM_001080495)	-23108	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr20.1317840.-	chr20	1317840	1317841	-	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	7961	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr17.77114054.+	chr17	77114054	77114055	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	43035	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr16.22248654.+	chr16	22248654	22248655	+	0	NA	"intron (NM_013302, intron 2 of 17)"	MIR3|SINE|MIR	31062	NM_013302	29904	Hs.498892	NM_013302		EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding
chr8.142212808.+	chr8	142212808	142212809	+	0	NA	Intergenic	SVA_D|Other|Other	25865	NM_001080431	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	"solute carrier family 45, member 4"	protein-coding
chr14.22030014.+	chr14	22030014	22030015	+	0	NA	Intergenic	AluSx3|SINE|Alu	8861	NM_001005465	26533	Hs.554581	NM_001005465	ENSG00000169208	OR10G3	OR14-40	"olfactory receptor, family 10, subfamily G, member 3"	protein-coding
chr6.126100209.-	chr6	126100209	126100210	-	0	NA	Intergenic	AluY|SINE|Alu	2098	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr11.64510491.+	chr11	64510491	64510492	+	0	NA	"intron (NM_153819, intron 1 of 16)"	CpG-4298	1139	NM_001098671	10235	Hs.99491	NM_001098670	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2 (calcium and DAG-regulated)	protein-coding
chr8.101661650.+	chr8	101661650	101661651	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	243	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr7.5335186.-	chr7	5335186	5335187	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	FordPrefect_a|DNA|hAT-Tip100	-12625	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr6.106553575.-	chr6	106553575	106553576	-	0	NA	"exon (NM_001198, exon 5 of 7)"	"exon (NM_001198, exon 5 of 7)"	-6838	NM_182907	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	"PR domain containing 1, with ZNF domain"	protein-coding
chr10.122148652.+	chr10	122148652	122148653	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67814	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr8.41166037.-	chr8	41166037	41166038	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-953	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr16.46387505.-	chr16	46387505	46387506	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215504	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr19.58310312.-	chr19	58310312	58310313	-	0	NA	Intergenic	AluY|SINE|Alu	-15969	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr2.224724703.-	chr2	224724703	224724704	-	0	NA	Intergenic	AluSp|SINE|Alu	22384	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chrX.125299934.+	chrX	125299934	125299935	+	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	146	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr12.113494397.-	chr12	113494397	113494398	-	0	NA	Intergenic	CpG	1265	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chrX.122910257.-	chrX	122910257	122910258	-	0	NA	Intergenic	AluJo|SINE|Alu	43353	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr14.42144552.+	chr14	42144552	42144553	+	0	NA	"intron (NM_152447, intron 1 of 5)"	SVA_D|Other|Other	67788	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
chrX.18849795.+	chrX	18849795	18849796	+	0	NA	Intergenic	AluY|SINE|Alu	-58619	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr6.143858981.+	chr6	143858981	143858982	+	0	NA	Intergenic	AluSx3|SINE|Alu	24204	NR_027114	285740	Hs.432656	NR_027113		LOC285740	-	uncharacterized LOC285740	miscRNA
chr2.101959032.+	chr2	101959032	101959033	+	0	NA	Intergenic	Intergenic	33120	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	miscRNA
chr2.106682161.+	chr2	106682161	106682162	+	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	48	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr7.1798880.+	chr7	1798880	1798881	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50082	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr5.141451811.+	chr5	141451811	141451812	+	0	NA	Intergenic	AluSq|SINE|Alu	-36513	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr2.113965194.+	chr2	113965194	113965195	+	0	NA	Intergenic	AluY|SINE|Alu	-27910	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr1.1847410.-	chr1	1847410	1847411	-	0	NA	"intron (NM_138705, intron 2 of 5)"	"intron (NM_138705, intron 2 of 5)"	-1144	NM_138705	163688	Hs.85902	NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin-like 6	protein-coding
chr5.1887192.-	chr5	1887192	1887193	-	0	NA	Intergenic	CpG-20520	4312	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr7.51276066.+	chr7	51276066	51276067	+	0	NA	"intron (NM_015198, intron 2 of 12)"	SVA_D|Other|Other	108449	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
chr19.10587509.+	chr19	10587509	10587510	+	0	NA	Intergenic	AluSq2|SINE|Alu	23876	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr2.39267452.-	chr2	39267452	39267453	-	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	79967	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chrX.89718046.-	chrX	89718046	89718047	-	0	NA	Intergenic	AluY|SINE|Alu	-541106	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	"TGFB-induced factor homeobox 2-like, X-linked"	protein-coding
chr1.229762165.-	chr1	229762165	229762166	-	0	NA	promoter-TSS (NM_001025247)	promoter-TSS (NM_001025247)	-184	NM_014777	9816	Hs.533628	NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding
chr1.212962760.+	chr1	212962760	212962761	+	0	NA	"intron (NM_015471, intron 1 of 5)"	AluSq2|SINE|Alu	2379	NM_015471	25936	Hs.497692	NM_001042549		NSL1	C1orf48|MIS14	"NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr6.89378014.+	chr6	89378014	89378015	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295334	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr16.33966269.-	chr16	33966269	33966270	-	0	NA	Intergenic	CpG	3766	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chrX.32910768.+	chrX	32910768	32910769	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127549	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chrX.73545817.+	chrX	73545817	73545818	+	0	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	21792	NM_203303	389874	Hs.157231	NM_203303	ENSG00000187969	ZCCHC13	CNBP2|ZNF9L	"zinc finger, CCHC domain containing 13"	protein-coding
chr5.128197000.-	chr5	128197000	128197001	-	0	NA	Intergenic	AluYk4|SINE|Alu	104210	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr10.135104760.+	chr10	135104760	135104761	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14353	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr2.113642152.+	chr2	113642152	113642153	+	0	NA	Intergenic	AluJb|SINE|Alu	-28396	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr8.99627108.-	chr8	99627108	99627109	-	0	NA	"intron (NM_001256313, intron 4 of 8)"	L1PA2|LINE|L1	-187858	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr2.73429807.+	chr2	73429807	73429808	+	0	NA	"exon (NM_001134462, exon 1 of 3)"	"exon (NM_001134462, exon 1 of 3)"	421	NM_001134462	344022	Hs.694384	NM_001134462		NOTO	-	notochord homeobox	protein-coding
chr11.66676672.+	chr11	66676672	66676673	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1332	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr7.21370282.-	chr7	21370282	21370283	-	0	NA	Intergenic	MER52D|LTR|ERV1	97407	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr17.45055885.-	chr17	45055885	45055886	-	0	NA	"3' UTR (NM_203400, exon 1 of 1)"	"3' UTR (NM_203400, exon 1 of 1)"	-729	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr8.14882347.-	chr8	14882347	14882348	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171328	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr17.11197488.+	chr17	11197488	11197489	+	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc|SINE|Alu	52748	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr21.37627693.-	chr21	37627693	37627694	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64794	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr5.89746521.+	chr5	89746521	89746522	+	0	NA	Intergenic	AluSz|SINE|Alu	24064	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr1.3461455.+	chr1	3461455	3461456	+	0	NA	"intron (NM_001409, intron 4 of 36)"	"intron (NM_001409, intron 4 of 36)"	15899	NR_030277	693135		NR_030277		MIR551A	MIRN551A	microRNA 551a	miscRNA
chr10.45240283.+	chr10	45240283	45240284	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166481	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr9.1141629.+	chr9	1141629	1141630	+	0	NA	Intergenic	AluY|SINE|Alu	91009	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr19.17585597.+	chr19	17585597	17585598	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSp|SINE|Alu	4297	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr19.15718056.+	chr19	15718056	15718057	+	0	NA	Intergenic	AluY|SINE|Alu	-7973	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr14.44126248.+	chr14	44126248	44126249	+	0	NA	Intergenic	AluSc|SINE|Alu	850251	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr7.5244748.-	chr7	5244748	5244749	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9152	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr16.3203724.+	chr16	3203724	3203725	+	0	NA	Intergenic	AluSg|SINE|Alu	18590	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr10.70185147.+	chr10	70185147	70185148	+	0	NA	"intron (NR_102264, intron 15 of 21)"	AluSx3|SINE|Alu	-18096	NM_001042417	55680	Hs.653144	NM_001042417	ENSG00000204130	RUFY2	RABIP4R|ZFYVE13	RUN and FYVE domain containing 2	protein-coding
chr1.65532951.-	chr1	65532951	65532952	-	0	NA	Intergenic	CpG	8760	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr3.52525477.-	chr3	52525477	52525478	-	0	NA	"exon (NM_007184, exon 20 of 21)"	"exon (NM_007184, exon 20 of 21)"	3879	NM_015136	23166	Hs.301989	NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FELE-1|FEX1|STAB-1	stabilin 1	protein-coding
chr9.131293126.-	chr9	131293126	131293127	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21711	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr3.46792321.-	chr3	46792321	46792322	-	0	NA	Intergenic	CpG	6076	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr2.71562062.+	chr2	71562062	71562063	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3177	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr9.128842665.-	chr9	128842665	128842666	-	0	NA	Intergenic	LTR7|LTR|ERV1	246458	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr16.86348641.+	chr16	86348641	86348642	+	0	NA	Intergenic	Intergenic	28604	NR_038438	146513	Hs.434338	NR_038438	ENSG00000268532	LOC146513	-	uncharacterized LOC146513	miscRNA
chr19.40938943.+	chr19	40938943	40938944	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7011	NM_013376	29950	Hs.269898	NM_013376		SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding
chr6.34857470.-	chr6	34857470	34857471	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-432	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr19.6502333.-	chr19	6502333	6502334	-	0	NA	promoter-TSS (NM_006087)	promoter-TSS (NM_006087)	3	NM_006087	10382	Hs.110837	NM_006087	ENSG00000104833	TUBB4A	TUBB4|TUBB5|beta-5	"tubulin, beta 4A class IVa"	protein-coding
chr17.3792498.-	chr17	3792498	3792499	-	0	NA	"intron (NM_172207, intron 1 of 15)"	"intron (NM_172207, intron 1 of 15)"	-1539	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr9.137588913.-	chr9	137588913	137588914	-	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	-55261	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr15.90470298.+	chr15	90470298	90470299	+	0	NA	Intergenic	AluY|SINE|Alu	-14076	NM_182616	348110	Hs.6734	NM_182616		C15orf38	-	chromosome 15 open reading frame 38	protein-coding
chr20.43341985.-	chr20	43341985	43341986	-	0	NA	Intergenic	AluSx|SINE|Alu	1900	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr3.52981385.-	chr3	52981385	52981386	-	0	NA	"intron (NM_016329, intron 3 of 20)"	AluY|SINE|Alu	49788	NM_198563	375346	Hs.744189	NM_198563	ENSG00000213533	TMEM110	-	transmembrane protein 110	protein-coding
chr21.44345526.+	chr21	44345526	44345527	+	0	NA	Intergenic	HERVH48-int|LTR|ERV1	32148	NM_021075	4731	Hs.473937	NM_001001503	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	"NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa"	protein-coding
chr2.202046034.+	chr2	202046034	202046035	+	0	NA	Intergenic	AluSz|SINE|Alu	-1587	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr11.17034638.-	chr11	17034638	17034639	-	0	NA	"intron (NM_175058, intron 3 of 22)"	L2b|LINE|L2	-1325	NM_175058	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	"pleckstrin homology domain containing, family A member 7"	protein-coding
chr2.149395122.+	chr2	149395122	149395123	+	0	NA	Intergenic	AluY|SINE|Alu	-7438	NM_015630	26122	Hs.23270	NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chr9.131293204.-	chr9	131293204	131293205	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	"intron (NM_001003722, intron 9 of 15)"	21633	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr12.131127777.+	chr12	131127777	131127778	+	0	NA	Intergenic	Intergenic	-125367	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr8.609243.-	chr8	609243	609244	-	0	NA	Intergenic	Intergenic	-71983	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr22.22550493.+	chr22	22550493	22550494	+	0	NA	Intergenic	Intergenic	-48707	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr1.182234357.+	chr1	182234357	182234358	+	0	NA	Intergenic	AluJb|SINE|Alu	126182	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr19.48836648.-	chr19	48836648	48836649	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-8019	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr1.206223970.+	chr1	206223970	206223971	+	0	NA	promoter-TSS (NM_000707)	promoter-TSS (NM_000707)	-313	NM_000707	553	Hs.1372	NM_000707		AVPR1B	AVPR3	arginine vasopressin receptor 1B	protein-coding
chr8.11739692.-	chr8	11739692	11739693	-	0	NA	Intergenic	AluSx1|SINE|Alu	14046	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr16.88560606.+	chr16	88560606	88560607	+	0	NA	"intron (NM_153813, intron 3 of 9)"	"intron (NM_153813, intron 3 of 9)"	25280	NR_049821	100847057		NR_049821		MIR5189	-	microRNA 5189	miscRNA
chr6.168352157.+	chr6	168352157	168352158	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25462	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr15.90119029.-	chr15	90119029	90119030	-	0	NA	"exon (NM_152259, exon 1 of 22)"	"exon (NM_152259, exon 1 of 22)"	-211	NM_152259	90381	Hs.441708	NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1-interacting checkpoint and replication regulator	protein-coding
chr13.111268319.-	chr13	111268319	111268320	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-388	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr18.31802639.+	chr18	31802639	31802640	+	0	NA	promoter-TSS (NM_001198547)	promoter-TSS (NM_001198547)	-205	NR_036752	8715	Hs.514795	NM_001198546	ENSG00000101746	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
chr7.66480046.-	chr7	66480046	66480047	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18254	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr2.27588377.-	chr2	27588377	27588378	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4542	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr11.71524807.-	chr11	71524807	71524808	-	0	NA	promoter-TSS (NR_073386)	promoter-TSS (NR_073386)	-98	NR_073386	285407	Hs.744693	NR_073386		ALG1L9P	-	"asparagine-linked glycosylation 1-like 9, pseudogene"	pseudo
chr15.29130809.-	chr15	29130809	29130810	-	0	NA	Intergenic	CpG	36988	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr18.63211135.+	chr18	63211135	63211136	+	0	NA	Intergenic	AluY|SINE|Alu	-206353	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr8.609244.-	chr8	609244	609245	-	0	NA	Intergenic	Intergenic	-71982	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr15.89219695.-	chr15	89219695	89219696	-	0	NA	Intergenic	AluSx|SINE|Alu	-37656	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
chr14.64976417.-	chr14	64976417	64976418	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5125	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chr7.5244753.+	chr7	5244753	5244754	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	-9147	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr19.35562518.+	chr19	35562518	35562519	+	0	NA	"intron (NR_024562, intron 3 of 3)"	AluJo|SINE|Alu	31108	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr16.1228065.+	chr16	1228065	1228066	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24824	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr11.89400819.-	chr11	89400819	89400820	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8354	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr21.46737121.+	chr21	46737121	46737122	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	29154	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr5.179499720.-	chr5	179499720	179499721	-	0	NA	promoter-TSS (NM_018434)	promoter-TSS (NM_018434)	611	NM_018434	55819	Hs.484363	NM_018434	ENSG00000113269	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
chr7.94732963.+	chr7	94732963	94732964	+	0	NA	"intron (NM_001166160, intron 2 of 19)"	AluY|SINE|Alu	193753	NM_001166161	55607	Hs.21816	NM_001166160	ENSG00000158528	PPP1R9A	NRB1|NRBI|Neurabin-I	"protein phosphatase 1, regulatory subunit 9A"	protein-coding
chr5.131832497.-	chr5	131832497	131832498	-	0	NA	Intergenic	CpG	6032	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr3.84566271.+	chr3	84566271	84566272	+	0	NA	Intergenic	AluY|SINE|Alu	352455	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr1.151742025.+	chr1	151742025	151742026	+	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	2894	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr9.244001.-	chr9	244001	244002	-	0	NA	"intron (NM_203447, intron 1 of 47)"	AluY|SINE|Alu	28108	NM_152569	157983	Hs.190877	NM_152569	ENSG00000183784	C9orf66	RP11-59O6.1	chromosome 9 open reading frame 66	protein-coding
chr1.246995885.+	chr1	246995885	246995886	+	0	NA	Intergenic	AluSx1|SINE|Alu	42966	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr9.16748436.+	chr9	16748436	16748437	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	122350	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr14.95067794.-	chr14	95067794	95067795	-	0	NA	Intergenic	AluY|SINE|Alu	10920	NM_001085	12	Hs.710488	NM_001085	ENSG00000196136	SERPINA3	AACT|ACT|GIG25	"serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3"	protein-coding
chr22.32868811.-	chr22	32868811	32868812	-	0	NA	Intergenic	AluY|SINE|Alu	1896	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr14.30961058.-	chr14	30961058	30961059	-	0	NA	Intergenic	AluSz|SINE|Alu	67271	NM_017769	55632	Hs.605081	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
chr3.42630493.+	chr3	42630493	42630494	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1805	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr13.31023995.-	chr13	31023995	31023996	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16086	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr7.130418506.-	chr7	130418506	130418507	-	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	-382	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr5.31890050.-	chr5	31890050	31890051	-	0	NA	"intron (NM_178140, intron 1 of 23)"	AluSz|SINE|Alu	-46215	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	miscRNA
chr12.105389740.-	chr12	105389740	105389741	-	0	NA	Intergenic	AluY|SINE|Alu	-9642	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr19.4969373.-	chr19	4969373	4969374	-	0	NA	"intron (NM_015015, intron 1 of 22)"	CpG	-249	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr2.235860603.+	chr2	235860603	235860604	+	0	NA	promoter-TSS (NM_014521)	promoter-TSS (NM_014521)	-25	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr17.3317528.-	chr17	3317528	3317529	-	0	NA	Intergenic	AluSc8|SINE|Alu	6334	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chrX.119469551.+	chrX	119469551	119469552	+	0	NA	Intergenic	AluY|SINE|Alu	-24160	NM_001104544	55026	Hs.437563	NM_001104544	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
chr20.33005203.-	chr20	33005203	33005204	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	"intron (NM_001257137, intron 7 of 25)"	48927	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr10.118500978.+	chr10	118500978	118500979	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1107	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr7.5396376.+	chr7	5396376	5396377	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66801	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr3.20353546.-	chr3	20353546	20353547	-	0	NA	Intergenic	AluYk4|SINE|Alu	125822	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr14.101892568.+	chr14	101892568	101892569	+	0	NA	Intergenic	AluY|SINE|Alu	129445	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr6.58779199.+	chr6	58779199	58779200	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-491475	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr2.152760042.+	chr2	152760042	152760043	+	0	NA	"intron (NM_001005746, intron 2 of 13)"	"intron (NM_001005746, intron 2 of 13)"	70443	NM_001005747	785	Hs.120725	NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	"calcium channel, voltage-dependent, beta 4 subunit"	protein-coding
chr22.43238161.+	chr22	43238161	43238162	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15247	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr15.63229206.+	chr15	63229206	63229207	+	0	NA	Intergenic	AluSp|SINE|Alu	-105632	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr4.57633194.-	chr4	57633194	57633195	-	0	NA	Intergenic	AluSc8|SINE|Alu	-54445	NR_073417	6691	Hs.98243	NM_001271718	ENSG00000128040	SPINK2	HUSI-II	"serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)"	protein-coding
chr7.140185527.-	chr7	140185527	140185528	-	0	NA	Intergenic	FLAM_C|SINE|Alu	6158	NM_013446	23608	Hs.490347	NM_001145125	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
chr16.440476.+	chr16	440476	440477	+	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	-6716	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr12.132372576.-	chr12	132372576	132372577	-	0	NA	Intergenic	AluSx|SINE|Alu	6703	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr7.118277717.+	chr7	118277717	118277718	+	0	NA	Intergenic	AluY|SINE|Alu	413005	NM_019644	56311	Hs.729340	NM_001077708	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
chr19.1046756.-	chr19	1046756	1046757	-	0	NA	"intron (NM_019112, intron 13 of 46)"	CpG	-6654	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chrX.133639220.+	chrX	133639220	133639221	+	0	NA	Intergenic	AluSx|SINE|Alu	35072	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr1.52945432.-	chr1	52945432	52945433	-	0	NA	"intron (NM_001009881, intron 11 of 29)"	AluY|SINE|Alu	-73330	NM_001009881	23318	Hs.655407	NM_001009882	ENSG00000134744	ZCCHC11	PAPD3|TUT4	"zinc finger, CCHC domain containing 11"	protein-coding
chr15.74266293.-	chr15	74266293	74266294	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-18396	NM_001256675	9399	Hs.194816	NM_001256672	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
chr22.46522769.-	chr22	46522769	46522770	-	0	NA	Intergenic	Intergenic	-13203	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr5.103114758.-	chr5	103114758	103114759	-	0	NA	Intergenic	LTR12D|LTR|ERV1	216268	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr20.62512914.-	chr20	62512914	62512915	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13541	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr3.46709766.-	chr3	46709766	46709767	-	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	-9133	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr14.104029489.+	chr14	104029489	104029490	+	0	NA	promoter-TSS (NM_001015049)	promoter-TSS (NM_001015049)	190	NM_032374	84334	Hs.598441	NM_032374		APOPT1	APOP1|C14orf153	"apoptogenic 1, mitochondrial"	protein-coding
chr7.2916578.-	chr7	2916578	2916579	-	0	NA	Intergenic	Intergenic	32619	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr5.128197056.-	chr5	128197056	128197057	-	0	NA	Intergenic	AluYk4|SINE|Alu	104154	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr6.168352130.+	chr6	168352130	168352131	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25489	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr13.81676513.-	chr13	81676513	81676514	-	0	NA	Intergenic	SVA_D|Other|Other	761427	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr2.38825116.+	chr2	38825116	38825117	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5062	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr15.63229207.+	chr15	63229207	63229208	+	0	NA	Intergenic	AluSp|SINE|Alu	-105631	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr5.8479653.+	chr5	8479653	8479654	+	0	NA	Intergenic	AluY|SINE|Alu	18615	NR_039663	100616142		NR_039663	ENSG00000266471	MIR4458	-	microRNA 4458	miscRNA
chr19.47628028.+	chr19	47628028	47628029	+	0	NA	Intergenic	AluY|SINE|Alu	-6052	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr4.174023268.-	chr4	174023268	174023269	-	0	NA	Intergenic	Harlequin-int|LTR|ERV1	66636	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
chr14.44126266.-	chr14	44126266	44126267	-	0	NA	Intergenic	AluSc|SINE|Alu	-850233	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr3.30575183.-	chr3	30575183	30575184	-	0	NA	Intergenic	AluY|SINE|Alu	72811	NM_001024847	7048	Hs.604277	NM_001024847	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	"transforming growth factor, beta receptor II (70/80kDa)"	protein-coding
chr14.75219140.-	chr14	75219140	75219141	-	0	NA	Intergenic	AluY|SINE|Alu	10929	NM_019589	56252	Hs.531111	NM_019589	ENSG00000119596	YLPM1	C14orf170|ZAP113|ZAP3	YLP motif containing 1	protein-coding
chr4.989205.-	chr4	989205	989206	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1981	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr16.17617337.+	chr16	17617337	17617338	+	0	NA	Intergenic	AluSz|SINE|Alu	-52599	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr20.61947998.+	chr20	61947998	61947999	+	0	NA	"exon (NM_020882, exon 21 of 36)"	"exon (NM_020882, exon 21 of 36)"	23460	NM_020882	57642	Hs.271285	NM_020882	ENSG00000101203	COL20A1	bA261N11.4	"collagen, type XX, alpha 1"	protein-coding
chrM.6545.+	chrM	6545	6546	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr7.53103650.-	chr7	53103650	53103651	-	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	-301	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr1.113437427.-	chr1	113437427	113437428	-	0	NA	Intergenic	LTR12C|LTR|ERV1	28545	NR_002796	246182	Hs.647691	NR_002796		AKR7A2P1	AFARP1	"aldo-keto reductase family 7, member A2 pseudogene 1"	pseudo
chr8.22441046.-	chr8	22441046	22441047	-	0	NA	"intron (NM_198042, intron 2 of 7)"	AluSx1|SINE|Alu	-3059	NM_176871	64236	Hs.632034	NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2 (mystique)	protein-coding
chr1.183670881.+	chr1	183670881	183670882	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48433	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr17.57868982.+	chr17	57868982	57868983	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49645	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr6.65337796.+	chr6	65337796	65337797	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673515	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr8.7414125.+	chr8	7414125	7414126	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2501	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr3.43950003.-	chr3	43950003	43950004	-	0	NA	Intergenic	LTR16A|LTR|ERVL	205701	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1	microRNA 138-1	miscRNA
chr6.123144121.+	chr6	123144121	123144122	+	0	NA	Intergenic	AluY|SINE|Alu	34150	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr2.109090612.-	chr2	109090612	109090613	-	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	-25035	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr6.43070151.+	chr6	43070151	43070152	+	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	25599	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr5.176482979.-	chr5	176482979	176482980	-	0	NA	"intron (NM_012279, intron 5 of 6)"	AluSx|SINE|Alu	30942	NM_213647	2264	Hs.165950	NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
chr12.113772869.+	chr12	113772869	113772870	+	0	NA	promoter-TSS (NM_024959)	promoter-TSS (NM_024959)	56	NM_024959	80024	Hs.286194	NM_024959	ENSG00000089060	SLC24A6	NCKX6|NCLX	"solute carrier family 24 (sodium/lithium/calcium exchanger), member 6"	protein-coding
chrX.40029666.+	chrX	40029666	40029667	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	6916	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr14.50705795.-	chr14	50705795	50705796	-	0	NA	Intergenic	AluSx1|SINE|Alu	7696	NM_006939	6655	Hs.291533	NM_006939	ENSG00000100485	SOS2	-	son of sevenless homolog 2 (Drosophila)	protein-coding
chr21.47535928.-	chr21	47535928	47535929	-	0	NA	"exon (NM_058175, exon 7 of 28)"	"exon (NM_058175, exon 7 of 28)"	-17895	NM_058174	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr17.3887908.-	chr17	3887908	3887909	-	0	NA	Intergenic	AluSx|SINE|Alu	20150	NM_174954	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	"ATPase, Ca++ transporting, ubiquitous"	protein-coding
chr3.128161131.-	chr3	128161131	128161132	-	0	NA	Intergenic	Intergenic	21306	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr6.160985727.-	chr6	160985727	160985728	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53571	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr16.50142552.-	chr16	50142552	50142553	-	0	NA	Intergenic	AluSz6|SINE|Alu	-42671	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr19.50154955.-	chr19	50154955	50154956	-	0	NA	"exon (NM_021228, exon 7 of 11)"	"exon (NM_021228, exon 7 of 11)"	-9573	NM_021228	58506	Hs.103521	NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD-associated factor 1	protein-coding
chr7.1798924.+	chr7	1798924	1798925	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50126	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr22.20204049.+	chr22	20204049	20204050	+	0	NA	Intergenic	AluSx1|SINE|Alu	10194	NR_026919	150197	Hs.635544	NM_152508		LOC150197	-	uncharacterized LOC150197	miscRNA
chr11.777745.+	chr11	777745	777746	+	0	NA	promoter-TSS (NM_182612)	promoter-TSS (NM_182612)	-258	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr20.62880362.-	chr20	62880362	62880363	-	0	NA	Intergenic	AluSx1|SINE|Alu	6686	NM_018257	55251	Hs.279562	NM_001104925	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
chr1.3673607.+	chr1	3673607	3673608	+	0	NA	"intron (NM_152492, intron 4 of 11)"	"intron (NM_152492, intron 4 of 11)"	4642	NM_152492	148870	Hs.348700	NM_152492	ENSG00000162592	CCDC27	-	coiled-coil domain containing 27	protein-coding
chr3.136117004.-	chr3	136117004	136117005	-	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	-147837	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr2.43254189.-	chr2	43254189	43254190	-	0	NA	Intergenic	Intergenic	-199556	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr2.1563008.-	chr2	1563008	1563009	-	0	NA	Intergenic	Intergenic	-144828	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr22.38498889.+	chr22	38498889	38498890	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7787	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr9.111476098.-	chr9	111476098	111476099	-	0	NA	Intergenic	L1PA7|LINE|L1	-142177	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr2.39384036.-	chr2	39384036	39384037	-	0	NA	Intergenic	AluSx1|SINE|Alu	36432	NM_005633	6654	Hs.732497	NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4	son of sevenless homolog 1 (Drosophila)	protein-coding
chr7.6453956.-	chr7	6453956	6453957	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	-33687	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr21.43109545.-	chr21	43109545	43109546	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10083	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr9.95526676.+	chr9	95526676	95526677	+	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	407	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr21.22013088.-	chr21	22013088	22013089	-	0	NA	Intergenic	AluY|SINE|Alu	-162338	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	miscRNA
chr2.237068260.-	chr2	237068260	237068261	-	0	NA	Intergenic	CpG	-8392	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.242500460.+	chr2	242500460	242500461	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1902	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr10.94709482.-	chr10	94709482	94709483	-	0	NA	"intron (NM_001013848, intron 14 of 21)"	AluSq2|SINE|Alu	-101257	NM_019053	54536	Hs.655657	NM_001013848	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
chr12.131551527.-	chr12	131551527	131551528	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98029	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr11.2278988.-	chr11	2278988	2278989	-	0	NA	Intergenic	AluY|SINE|Alu	-13194	NM_005170	430	Hs.152475	NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute complex homolog 2 (Drosophila)	protein-coding
chr7.22396728.+	chr7	22396728	22396729	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-195	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr22.50959118.-	chr22	50959118	50959119	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4915	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr4.71792461.+	chr4	71792461	71792462	+	0	NA	"intron (NM_001244767, intron 1 of 3)"	AluY|SINE|Alu	24404	NM_173468	92597	Hs.744715	NM_001244766	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
chr16.89331765.-	chr16	89331765	89331766	-	0	NA	Intergenic	Intergenic	-47654	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chr17.56833246.-	chr17	56833246	56833247	-	0	NA	promoter-TSS (NM_014906)	promoter-TSS (NM_014906)	-16	NR_048561	22843	Hs.245044	NM_014906		PPM1E	CaMKP-N|POPX1|PP2CH|caMKN	"protein phosphatase, Mg2+/Mn2+ dependent, 1E"	protein-coding
chr9.138202303.-	chr9	138202303	138202304	-	0	NA	Intergenic	MER67B|LTR|ERV1	32792	NM_173520	157927	Hs.559511	NM_173520	ENSG00000178243	C9orf62	-	chromosome 9 open reading frame 62	protein-coding
chr11.72220043.-	chr11	72220043	72220044	-	0	NA	Intergenic	AluY|SINE|Alu	74319	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr1.28703564.-	chr1	28703564	28703565	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7471	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr6.88118010.+	chr6	88118010	88118011	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	320	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr13.37248659.+	chr13	37248659	37248660	+	0	NA	"intron (NM_203451, intron 1 of 1)"	"intron (NM_203451, intron 1 of 1)"	610	NM_203451	400120	Hs.422375	NM_203451	ENSG00000180440	SERTM1	C13orf36	serine-rich and transmembrane domain containing 1	protein-coding
chr19.19594689.+	chr19	19594689	19594690	+	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	31780	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr10.71044932.+	chr10	71044932	71044933	+	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	15176	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr7.64349814.-	chr7	64349814	64349815	-	0	NA	Intergenic	CpG	13806	NR_003099	10793	Hs.520889	NM_021148		ZNF273	HZF9	zinc finger protein 273	protein-coding
chr3.170641242.+	chr3	170641242	170641243	+	0	NA	Intergenic	SVA_C|Other|Other	-14816	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr19.35168500.-	chr19	35168500	35168501	-	0	NA	promoter-TSS (NM_018443)	promoter-TSS (NM_018443)	67	NM_001012320	55900	Hs.436350	NM_001012320	ENSG00000089335	ZNF302	HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327	zinc finger protein 302	protein-coding
chr22.50681875.+	chr22	50681875	50681876	+	0	NA	"intron (NM_020461, intron 1 of 24)"	AluSg|SINE|Alu	1525	NM_020461	85378	Hs.336431	NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCPHCR	"tubulin, gamma complex associated protein 6"	protein-coding
chrX.112187610.-	chrX	112187610	112187611	-	0	NA	Intergenic	AluY|SINE|Alu	103567	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr1.226323697.-	chr1	226323697	226323698	-	0	NA	Intergenic	Intergenic	-50726	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr17.77198176.-	chr17	77198176	77198177	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-127157	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr2.236999587.-	chr2	236999587	236999588	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-77065	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr10.133203433.+	chr10	133203433	133203434	+	0	NA	Intergenic	Intergenic	-93449	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr9.74525784.-	chr9	74525784	74525785	-	0	NA	promoter-TSS (NM_182505)	promoter-TSS (NM_182505)	-364	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr9.132643194.+	chr9	132643194	132643195	+	0	NA	"3' UTR (NM_001110303, exon 26 of 26)"	"3' UTR (NM_001110303, exon 26 of 26)"	45498	NM_001008563	10868	Hs.5452	NM_001008563	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
chr2.106682171.+	chr2	106682171	106682172	+	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	58	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr6.2221747.+	chr6	2221747	2221748	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24121	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr11.46730246.+	chr11	46730246	46730247	+	0	NA	Intergenic	AluSz|SINE|Alu	7602	NM_001184751	79797	Hs.656931	NM_001184751	ENSG00000175213	ZNF408	-	zinc finger protein 408	protein-coding
chr1.90287212.+	chr1	90287212	90287213	+	0	NA	promoter-TSS (NM_018103)	promoter-TSS (NM_018103)	-268	NM_018103	55144	Hs.482087	NM_001134479	ENSG00000171492	LRRC8D	LRRC5	"leucine rich repeat containing 8 family, member D"	protein-coding
chr10.133869254.+	chr10	133869254	133869255	+	0	NA	Intergenic	Intergenic	-49059	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr12.50448252.-	chr12	50448252	50448253	-	0	NA	Intergenic	AluSx|SINE|Alu	3168	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr2.85499735.-	chr2	85499735	85499736	-	0	NA	"intron (NM_031283, intron 3 of 11)"	AluJr|SINE|Alu	-55684	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr17.74305359.-	chr17	74305359	74305360	-	0	NA	Intergenic	AluSx|SINE|Alu	1598	NM_032134	84074	Hs.252739	NM_032134	ENSG00000129646	QRICH2	-	glutamine rich 2	protein-coding
chr2.241813683.+	chr2	241813683	241813684	+	0	NA	"intron (NM_000030, intron 6 of 10)"	"intron (NM_000030, intron 6 of 10)"	5521	NM_000030	189	Hs.144567	NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6	alanine-glyoxylate aminotransferase	protein-coding
chr3.84566266.+	chr3	84566266	84566267	+	0	NA	Intergenic	AluY|SINE|Alu	352460	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr1.222223254.+	chr1	222223254	222223255	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-307738	NM_144729	11221	Hs.732301	NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
chr15.24084631.-	chr15	24084631	24084632	-	0	NA	Intergenic	AluY|SINE|Alu	152181	NM_002487	4692	Hs.50130	NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	"necdin, melanoma antigen (MAGE) family member"	protein-coding
chr5.178491462.-	chr5	178491462	178491463	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3855	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr21.20725145.+	chr21	20725145	20725146	+	0	NA	Intergenic	AluSx3|SINE|Alu	-949175	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chr2.190692835.-	chr2	190692835	190692836	-	0	NA	"intron (NM_001128143, intron 5 of 11)"	AluY|SINE|Alu	43738	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr16.89034192.+	chr16	89034192	89034193	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9312	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr10.120426980.-	chr10	120426980	120426981	-	0	NA	Intergenic	AluSp|SINE|Alu	71820	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr8.3501043.+	chr8	3501043	3501044	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351285	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr17.4435102.-	chr17	4435102	4435103	-	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	-23579	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr12.133328262.-	chr12	133328262	133328263	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10189	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr17.46187009.+	chr17	46187009	46187010	+	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	2062	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr13.99373215.-	chr13	99373215	99373216	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31714	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr11.100596584.+	chr11	100596584	100596585	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38177	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr6.168352153.+	chr6	168352153	168352154	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25466	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr16.87360645.-	chr16	87360645	87360646	-	0	NA	Intergenic	Intergenic	9619	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr7.13901786.-	chr7	13901786	13901787	-	0	NA	Intergenic	AluY|SINE|Alu	-124353	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr17.7246082.-	chr17	7246082	7246083	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6234	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr19.3157185.+	chr19	3157185	3157186	+	0	NA	"intron (NM_002068, intron 5 of 6)"	AluSq2|SINE|Alu	20994	NM_002068	2769	Hs.73797	NM_002068	ENSG00000060558	GNA15	GNA16	"guanine nucleotide binding protein (G protein), alpha 15 (Gq class)"	protein-coding
chr11.2213962.-	chr11	2213962	2213963	-	0	NA	Intergenic	Intergenic	-19669	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr10.38249296.-	chr10	38249296	38249297	-	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	-16157	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chr4.177146939.-	chr4	177146939	177146940	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30117	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr2.47661276.-	chr2	47661276	47661277	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31070	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr6.46742373.-	chr6	46742373	46742374	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18721	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr6.135685298.+	chr6	135685298	135685299	+	0	NA	"intron (NM_001134831, intron 23 of 28)"	SVA_D|Other|Other	133605	NM_017651	54806	Hs.386684	NM_001134830	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
chr12.53373491.-	chr12	53373491	53373492	-	0	NA	Intergenic	AluSx1|SINE|Alu	26571	NM_001417	1975	Hs.702041	NM_018507	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
chr13.109792898.-	chr13	109792898	109792899	-	0	NA	"exon (NM_015011, exon 32 of 35)"	"exon (NM_015011, exon 32 of 35)"	-26753	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	miscRNA
chr17.42869150.-	chr17	42869150	42869151	-	0	NA	Intergenic	AluY|SINE|Alu	-32582	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr1.178011469.+	chr1	178011469	178011470	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4327	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr15.93372474.-	chr15	93372474	93372475	-	0	NA	Intergenic	AluSg|SINE|Alu	-33760	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr16.68233564.-	chr16	68233564	68233565	-	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	-36572	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr1.110881110.+	chr1	110881110	110881111	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	683	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr7.23637437.+	chr7	23637437	23637438	+	0	NA	"intron (NM_138771, intron 1 of 3)"	CpG	439	NM_138771	90693	Hs.232296	NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
chr2.68031682.+	chr2	68031682	68031683	+	0	NA	Intergenic	AluY|SINE|Alu	258477	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr12.132546703.-	chr12	132546703	132546704	-	0	NA	"exon (NM_015409, exon 46 of 53)"	"exon (NM_015409, exon 46 of 53)"	22125	NR_003290	347918	Hs.122115	NM_182613	ENSG00000185684	EP400NL	-	EP400 N-terminal like	pseudo
chr16.88387027.+	chr16	88387027	88387028	+	0	NA	Intergenic	L2b|LINE|L2	-106852	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr13.21363694.+	chr13	21363694	21363695	+	0	NA	"intron (NM_022459, intron 19 of 22)"	AluY|SINE|Alu	-15637	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
chr3.135859547.+	chr3	135859547	135859548	+	0	NA	"intron (NM_001190447, intron 12 of 12)"	AluSp|SINE|Alu	53763	NM_001145417	55167	Hs.18631	NM_001145417	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
chr6.170580911.-	chr6	170580911	170580912	-	0	NA	Intergenic	CpG	9254	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr16.4835184.+	chr16	4835184	4835185	+	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	-3214	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chrX.81762767.+	chrX	81762767	81762768	+	0	NA	Intergenic	AluY|SINE|Alu	-1000502	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr9.16855827.-	chr9	16855827	16855828	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14959	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr5.14460467.-	chr5	14460467	14460468	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121424	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr5.1858789.+	chr5	1858789	1858790	+	0	NA	Intergenic	Intergenic	24091	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr22.43670621.-	chr22	43670621	43670622	-	0	NA	"intron (NM_173050, intron 4 of 21)"	"intron (NM_173050, intron 4 of 21)"	-68773	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr9.90884990.+	chr9	90884990	90884991	+	0	NA	Intergenic	AluY|SINE|Alu	-118307	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr3.85080918.+	chr3	85080918	85080919	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72785	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr20.20345758.+	chr20	20345758	20345759	+	0	NA	Intergenic	CpG	-3007	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	insulinoma-associated 1	protein-coding
chr7.151056287.-	chr7	151056287	151056288	-	0	NA	"intron (NM_016118, intron 7 of 14)"	AluY|SINE|Alu	-17440	NM_016118	51667	Hs.647082	NM_001243351	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin-like proteins 1	protein-coding
chr2.220276972.-	chr2	220276972	220276973	-	0	NA	Intergenic	AluSg|SINE|Alu	6127	NM_001927	1674	Hs.594952	NM_001927	ENSG00000175084	DES	CSM1|CSM2	desmin	protein-coding
chr19.18180457.+	chr19	18180457	18180458	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17240	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr17.7246121.-	chr17	7246121	7246122	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6273	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr17.78397616.-	chr17	78397616	78397617	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4398	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr5.1202134.+	chr5	1202134	1202135	+	0	NA	"intron (NM_001003841, intron 1 of 11)"	CpG	424	NM_001003841	340024	Hs.481478	NM_001003841	ENSG00000174358	SLC6A19	B0AT1|HND	"solute carrier family 6 (neutral amino acid transporter), member 19"	protein-coding
chr10.134034456.-	chr10	134034456	134034457	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34042	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr22.46936379.+	chr22	46936379	46936380	+	0	NA	Intergenic	AluSx|SINE|Alu	-3312	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr18.76189789.-	chr18	76189789	76189790	-	0	NA	Intergenic	CpG	550486	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr2.100891966.+	chr2	100891966	100891967	+	0	NA	"3' UTR (NM_198461, exon 12 of 12)"	"3' UTR (NM_198461, exon 12 of 12)"	47229	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
chr14.23517057.-	chr14	23517057	23517058	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5681	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr18.74140104.-	chr18	74140104	74140105	-	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	-67042	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr1.223302710.+	chr1	223302710	223302711	+	0	NA	"intron (NM_003268, intron 5 of 5)"	"intron (NM_003268, intron 5 of 5)"	13914	NM_003268	7100	Hs.604542	NM_003268	ENSG00000187554	TLR5	SLEB1|TIL3	toll-like receptor 5	protein-coding
chr19.57148748.-	chr19	57148748	57148749	-	0	NA	Intergenic	AluY|SINE|Alu	5779	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
chr13.111104712.+	chr13	111104712	111104713	+	0	NA	"intron (NM_001846, intron 20 of 47)"	AluY|SINE|Alu	55814	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	miscRNA
chr7.1542252.+	chr7	1542252	1542253	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1766	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr19.4974266.+	chr19	4974266	4974267	+	0	NA	"intron (NM_015015, intron 1 of 22)"	AluY|SINE|Alu	5142	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr3.38106443.-	chr3	38106443	38106444	-	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	-25747	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr6.1610257.+	chr6	1610257	1610258	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-424	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr17.20588545.-	chr17	20588545	20588546	-	0	NA	Intergenic	SVA_D|Other|Other	27214	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr2.113642156.-	chr2	113642156	113642157	-	0	NA	Intergenic	AluJb|SINE|Alu	28392	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr21.37627677.+	chr21	37627677	37627678	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64810	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr8.128328713.+	chr8	128328713	128328714	+	0	NA	Intergenic	Intergenic	-99144	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr1.99544229.+	chr1	99544229	99544230	+	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	-73780	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr18.54318501.+	chr18	54318501	54318502	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-115	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr2.4156468.-	chr2	4156468	4156469	-	0	NA	Intergenic	Intergenic	134846	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr14.19890087.+	chr14	19890087	19890088	+	0	NA	Intergenic	CpG	-4282	NR_073460	101101776	Hs.617315	NR_073460		LOC101101776	-	ribosome biogenesis protein BMS1 homolog pseudogene	pseudo
chr6.4780587.+	chr6	4780587	4780588	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3907	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr8.144512805.+	chr8	144512805	144512806	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-203	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr19.7929651.+	chr19	7929651	7929652	+	0	NA	"3' UTR (NM_001159944, exon 19 of 19)"	"3' UTR (NM_001159944, exon 19 of 19)"	9675	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr6.42420379.+	chr6	42420379	42420380	+	0	NA	promoter-TSS (NM_033502)	promoter-TSS (NM_033502)	-596	NM_033502	55809	Hs.485392	NM_033502	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|RP1-139D8.5|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
chr19.7929655.+	chr19	7929655	7929656	+	0	NA	"3' UTR (NM_001159944, exon 19 of 19)"	"3' UTR (NM_001159944, exon 19 of 19)"	9671	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr7.56109483.-	chr7	56109483	56109484	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9785	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr10.135031487.-	chr10	135031487	135031488	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12291	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr7.33176773.-	chr7	33176773	33176774	-	0	NA	"intron (NM_014451, intron 1 of 20)"	MER52D|LTR|ERV1	-7621	NM_001033605	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr18.34765003.+	chr18	34765003	34765004	+	0	NA	"intron (NM_020776, intron 9 of 9)"	AluY|SINE|Alu	-355824	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr17.77899578.+	chr17	77899578	77899579	+	0	NA	Intergenic	Intergenic	25078	NM_001271844	125058	Hs.369819	NM_001271844		TBC1D16	-	"TBC1 domain family, member 16"	protein-coding
chr1.55483766.-	chr1	55483766	55483767	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19149	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr14.23706424.+	chr14	23706424	23706425	+	0	NA	Intergenic	AluSz|SINE|Alu	48885	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr14.105134515.-	chr14	105134515	105134516	-	0	NA	Intergenic	AluSz|SINE|Alu	-9571	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr10.21183574.-	chr10	21183574	21183575	-	0	NA	"intron (NM_006393, intron 2 of 27)"	AluY|SINE|Alu	-2957	NM_006393	10529	Hs.5025	NM_001173484	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding
chr16.79060674.-	chr16	79060674	79060675	-	0	NA	"intron (NM_016373, intron 8 of 8)"	AluY|SINE|Alu	-573948	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	protein-coding
chr5.122848301.-	chr5	122848301	122848302	-	0	NA	"intron (NM_001270574, intron 1 of 9)"	GC_rich|Low_complexity|Low_complexity	-508	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr3.160673515.+	chr3	160673515	160673516	+	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	149168	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr6.142795156.-	chr6	142795156	142795157	-	0	NA	Intergenic	AluSc|SINE|Alu	-163817	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr7.82072944.-	chr7	82072944	82072945	-	0	NA	promoter-TSS (NM_000722)	promoter-TSS (NM_000722)	-87	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A	"calcium channel, voltage-dependent, alpha 2/delta subunit 1"	protein-coding
chrX.19461216.+	chrX	19461216	19461217	+	0	NA	"intron (NM_001001671, intron 6 of 28)"	AluSz|SINE|Alu	72163	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr2.159693845.+	chr2	159693845	159693846	+	0	NA	Intergenic	AluSp|SINE|Alu	42016	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chrX.69569465.-	chrX	69569465	69569466	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59586	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr6.42476455.-	chr6	42476455	42476456	-	0	NA	Intergenic	AluY|SINE|Alu	55305	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr20.43342056.-	chr20	43342056	43342057	-	0	NA	Intergenic	AluSx|SINE|Alu	1829	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr6.24720966.+	chr6	24720966	24720967	+	0	NA	Intergenic	CpG	-1563	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr15.92290019.+	chr15	92290019	92290020	+	0	NA	Intergenic	AluY|SINE|Alu	-106919	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr1.55583165.+	chr1	55583165	55583166	+	0	NA	"intron (NM_015306, intron 38 of 67)"	AluYb8|SINE|Alu	78016	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr17.65335395.-	chr17	65335395	65335396	-	0	NA	Intergenic	AluSx|SINE|Alu	-27326	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr4.8679533.+	chr4	8679533	8679534	+	0	NA	Intergenic	AluY|SINE|Alu	85146	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr11.68821633.+	chr11	68821633	68821634	+	0	NA	"intron (NM_139075, intron 2 of 24)"	"intron (NM_139075, intron 2 of 24)"	5283	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr9.131013027.+	chr9	131013027	131013028	+	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	-5718	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr12.34354013.-	chr12	34354013	34354014	-	0	NA	Intergenic	AluSz|SINE|Alu	-178797	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr17.42869180.-	chr17	42869180	42869181	-	0	NA	Intergenic	AluY|SINE|Alu	-32612	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr6.15189315.-	chr6	15189315	15189316	-	0	NA	Intergenic	SVA_F|Other|Other	56891	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr9.140446376.+	chr9	140446376	140446377	+	0	NA	promoter-TSS (NM_032477)	promoter-TSS (NM_032477)	67	NM_032477	64975	Hs.44017	NM_032477		MRPL41	BMRP|MRP-L27|MRPL27|RPML27	mitochondrial ribosomal protein L41	protein-coding
chr18.66366015.-	chr18	66366015	66366016	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16338	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr19.47364609.-	chr19	47364609	47364610	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	10406	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr17.42774513.-	chr17	42774513	42774514	-	0	NA	Intergenic	AluY|SINE|Alu	7348	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chr16.723839.+	chr16	723839	723840	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2236	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chrX.29584332.+	chrX	29584332	29584333	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-649343	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr11.63926824.-	chr11	63926824	63926825	-	0	NA	"intron (NM_014067, intron 1 of 10)"	AluJb|SINE|Alu	-6761	NM_014067	28992	Hs.602898	NM_014067	ENSG00000133315	MACROD1	LRP16	MACRO domain containing 1	protein-coding
chr3.8721290.-	chr3	8721290	8721291	-	0	NA	Intergenic	Intergenic	27526	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr4.85768677.-	chr4	85768677	85768678	-	0	NA	"intron (NM_014991, intron 5 of 67)"	AluSc8|SINE|Alu	-118867	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chrX.133941660.-	chrX	133941660	133941661	-	0	NA	"exon (NM_001170779, exon 1 of 7)"	"exon (NM_001170779, exon 1 of 7)"	-437	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr14.106358727.+	chr14	106358727	106358728	+	0	NA	Intergenic	Intergenic	-25111	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr1.9517608.+	chr1	9517608	9517609	+	0	NA	Intergenic	AluJb|SINE|Alu	-81920	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr9.127877287.-	chr9	127877287	127877288	-	0	NA	"intron (NM_173690, intron 2 of 18)"	AluSx|SINE|Alu	-28551	NM_173690	286205	Hs.59504	NM_001144877		SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
chr3.174240472.+	chr3	174240472	174240473	+	0	NA	Intergenic	AluY|SINE|Alu	-336639	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr2.39267443.-	chr2	39267443	39267444	-	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	79958	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr5.162886984.-	chr5	162886984	162886985	-	0	NA	promoter-TSS (NM_012484)	promoter-TSS (NM_012484)	-159	NM_145266	134492	Hs.140443	NM_145266	ENSG00000170584	NUDCD2	-	NudC domain containing 2	protein-coding
chr1.182583556.-	chr1	182583556	182583557	-	0	NA	promoter-TSS (NR_036490)	promoter-TSS (NR_036490)	719	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LOC284648	-	uncharacterized LOC284648	miscRNA
chr9.138065648.-	chr9	138065648	138065649	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7807	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr21.32932397.-	chr21	32932397	32932398	-	0	NA	Intergenic	Intergenic	1107	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr5.1667760.-	chr5	1667760	1667761	-	0	NA	Intergenic	CpG	33640	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
chrX.133565026.-	chrX	133565026	133565027	-	0	NA	Intergenic	AluSp|SINE|Alu	29149	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr13.82029679.-	chr13	82029679	82029680	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114593	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr2.242500462.-	chr2	242500462	242500463	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1904	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr19.3220551.-	chr19	3220551	3220552	-	0	NA	Intergenic	AluSz|SINE|Alu	4150	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr3.29051435.+	chr3	29051435	29051436	+	0	NA	Intergenic	AluSc8|SINE|Alu	-271368	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr5.176292798.+	chr5	176292798	176292799	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33535	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr3.73614858.+	chr3	73614858	73614859	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59214	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr7.192622.+	chr7	192622	192623	+	0	NA	promoter-TSS (NM_020223)	promoter-TSS (NM_020223)	-347	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	"family with sequence similarity 20, member C"	protein-coding
chr19.49061649.+	chr19	49061649	49061650	+	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	6220	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr4.42659160.-	chr4	42659160	42659161	-	0	NA	promoter-TSS (NM_001105529)	promoter-TSS (NM_001105529)	38	NM_006095	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr1.115078601.-	chr1	115078601	115078602	-	0	NA	Intergenic	Intergenic	24820	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chrX.53123337.-	chrX	53123337	53123338	-	0	NA	Intergenic	CpG	-11795	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr14.35800651.+	chr14	35800651	35800652	+	0	NA	Intergenic	AluSx|SINE|Alu	39077	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr5.685088.-	chr5	685088	685089	-	0	NA	"intron (NM_007030, intron 1 of 3)"	"intron (NM_007030, intron 1 of 3)"	-8422	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr8.38758814.+	chr8	38758814	38758815	+	0	NA	promoter-TSS (NM_021623)	promoter-TSS (NM_021623)	61	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	"pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2"	protein-coding
chr17.5148719.-	chr17	5148719	5148720	-	0	NA	Intergenic	AluSq|SINE|Alu	10564	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr6.165953166.-	chr6	165953166	165953167	-	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	-122422	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr11.8661397.+	chr11	8661397	8661398	+	0	NA	"intron (NM_014818, intron 9 of 19)"	"intron (NM_014818, intron 9 of 19)"	18986	NM_014818	9866	Hs.130836	NM_014818	ENSG00000166436	TRIM66	C11orf29|TIF1D|TIF1DELTA	tripartite motif containing 66	protein-coding
chr6.142795166.-	chr6	142795166	142795167	-	0	NA	Intergenic	AluSc|SINE|Alu	-163807	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr22.49880377.+	chr22	49880377	49880378	+	0	NA	Intergenic	AluSx1|SINE|Alu	170813	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr17.20817643.-	chr17	20817643	20817644	-	0	NA	Intergenic	AluY|SINE|Alu	18190	NM_001004306	339184	Hs.674830	NM_001004306	ENSG00000205212	CCDC144NL	-	"coiled-coil domain containing 144 family, N-terminal like"	protein-coding
chr1.246995905.-	chr1	246995905	246995906	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42986	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr9.86597316.+	chr9	86597316	86597317	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1679	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr22.18251507.-	chr22	18251507	18251508	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4482	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr5.2860465.-	chr5	2860465	2860466	-	0	NA	Intergenic	Intergenic	-108203	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr5.42921806.+	chr5	42921806	42921807	+	0	NA	Intergenic	AluY|SINE|Alu	97107	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	miscRNA
chr7.21368957.-	chr7	21368957	21368958	-	0	NA	Intergenic	MER52D|LTR|ERV1	98732	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr12.132105895.+	chr12	132105895	132105896	+	0	NA	Intergenic	Intergenic	-89737	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr19.34623419.+	chr19	34623419	34623420	+	0	NA	Intergenic	SVA_D|Other|Other	-39933	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr7.6304948.-	chr7	6304948	6304949	-	0	NA	"intron (NM_004227, intron 1 of 12)"	MER58C|DNA|hAT-Charlie	-7294	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
chr7.13141823.+	chr7	13141823	13141824	+	0	NA	Intergenic	SVA_D|Other|Other	414912	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr8.57184592.+	chr8	57184592	57184593	+	0	NA	Intergenic	SVA_D|Other|Other	48649	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr17.46186997.-	chr17	46186997	46186998	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2050	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr14.103988569.-	chr14	103988569	103988570	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-627	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr11.99560023.-	chr11	99560023	99560024	-	0	NA	"intron (NM_175566, intron 1 of 21)"	AluY|SINE|Alu	-133147	NM_175566	53942	Hs.656783	NM_001243270	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
chr4.140201446.-	chr4	140201446	140201447	-	0	NA	promoter-TSS (NM_032623)	promoter-TSS (NM_032623)	-46	NM_032623	84709	Hs.710036	NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria-localized glutamic acid-rich protein	protein-coding
chr7.26294393.-	chr7	26294393	26294394	-	0	NA	Intergenic	AluSx1|SINE|Alu	37122	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr20.39898797.+	chr20	39898797	39898798	+	0	NA	"intron (NM_015035, intron 1 of 3)"	AluSg|SINE|Alu	29942	NM_015035	23051	Hs.380133	NM_015035	ENSG00000174306	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
chr6.163752506.-	chr6	163752506	163752507	-	0	NA	Intergenic	Intergenic	7001	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr5.1667727.-	chr5	1667727	1667728	-	0	NA	Intergenic	CpG	33607	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
chr3.46792385.-	chr3	46792385	46792386	-	0	NA	Intergenic	CpG	6140	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr18.49731964.+	chr18	49731964	49731965	+	0	NA	Intergenic	AluY|SINE|Alu	-134578	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr3.73614828.+	chr3	73614828	73614829	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59244	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chrX.40019661.+	chrX	40019661	40019662	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluY|SINE|Alu	16921	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr4.39561469.+	chr4	39561469	39561470	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32010	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr4.72877018.-	chr4	72877018	72877019	-	0	NA	Intergenic	AluY|SINE|Alu	20503	NM_004885	10886	Hs.99231	NM_001144756	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
chr20.5213491.+	chr20	5213491	5213492	+	0	NA	Intergenic	AluJr4|SINE|Alu	81524	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr14.23844994.-	chr14	23844994	23844995	-	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	1023	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr18.2377833.+	chr18	2377833	2377834	+	0	NA	Intergenic	AluSg7|SINE|Alu	193656	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr5.86907767.+	chr5	86907767	86907768	+	0	NA	Intergenic	AluY|SINE|Alu	-198917	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr15.41443910.-	chr15	41443910	41443911	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35570	NM_017553	54617	Hs.292949	NM_017553	ENSG00000128908	INO80	INO80A|INOC1|hINO80	INO80 homolog (S. cerevisiae)	protein-coding
chr13.31735134.-	chr13	31735134	31735135	-	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	-983	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr19.3220542.-	chr19	3220542	3220543	-	0	NA	Intergenic	AluSz|SINE|Alu	4159	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr12.10404000.+	chr12	10404000	10404001	+	0	NA	Intergenic	AluSx|SINE|Alu	38511	NM_031412	23710	Hs.524250	NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA(A) receptor-associated protein like 1	protein-coding
chr19.38755123.-	chr19	38755123	38755124	-	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	-25	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr6.128901382.+	chr6	128901382	128901383	+	0	NA	Intergenic	Intergenic	-59512	NM_001135648	5796	Hs.155919	NM_001135648	ENSG00000152894	PTPRK	R-PTP-kappa	"protein tyrosine phosphatase, receptor type, K"	protein-coding
chrX.53236868.+	chrX	53236868	53236869	+	0	NA	"intron (NM_001146702, intron 10 of 23)"	AluSx1|SINE|Alu	17736	NM_004187	8242	Hs.631768	NM_001146702	ENSG00000126012	KDM5C	DXS1272E|JARID1C|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169	lysine (K)-specific demethylase 5C	protein-coding
chr2.175200725.-	chr2	175200725	175200726	-	0	NA	"intron (NM_001145250, intron 1 of 1)"	CpG	-904	NM_001145250	100131390	Hs.516603	NM_001145250		SP9	ZNF990	Sp9 transcription factor	protein-coding
chr7.5244733.-	chr7	5244733	5244734	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9167	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr19.58175930.-	chr19	58175930	58175931	-	0	NA	Intergenic	CpG	4373	NM_152677	201516	Hs.469663	NM_152677	ENSG00000180532	ZSCAN4	ZNF494	zinc finger and SCAN domain containing 4	protein-coding
chr16.375233.+	chr16	375233	375234	+	0	NA	"intron (NM_003502, intron 2 of 10)"	CpG	27443	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr10.4887133.-	chr10	4887133	4887134	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18764	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr17.79215665.-	chr17	79215665	79215666	-	0	NA	TTS (NM_001086521)	TTS (NM_001086521)	-2554	NM_001086521	284184	Hs.356545	NM_001086521	ENSG00000224877	C17orf89	-	chromosome 17 open reading frame 89	protein-coding
chr4.106689324.+	chr4	106689324	106689325	+	0	NA	"intron (NM_024751, intron 5 of 11)"	AluY|SINE|Alu	57354	NM_001031720	79807	Hs.161429	NM_001031720	ENSG00000138780	GSTCD	-	"glutathione S-transferase, C-terminal domain containing"	protein-coding
chr13.114899239.+	chr13	114899239	114899240	+	0	NA	Intergenic	Intergenic	-1144	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr1.197418597.+	chr1	197418597	197418598	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181263	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr17.5403345.-	chr17	5403345	5403346	-	0	NA	"intron (NM_001162371, intron 1 of 1)"	CpG	-974	NM_001162371	728392	Hs.104305	NM_001162371		LOC728392	-	uncharacterized LOC728392	protein-coding
chr7.158671020.-	chr7	158671020	158671021	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21751	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr2.109409663.-	chr2	109409663	109409664	-	0	NA	"intron (NM_144978, intron 4 of 14)"	AluY|SINE|Alu	-6444	NM_144978	165055	Hs.731709	NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
chr19.14156331.+	chr19	14156331	14156332	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13640	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr13.24105728.-	chr13	24105728	24105729	-	0	NA	Intergenic	LTR12C|LTR|ERV1	38781	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr7.74306856.-	chr7	74306856	74306857	-	0	NA	promoter-TSS (NR_027777)	promoter-TSS (NR_027777)	38	NR_027776	5383	Hs.647025	NM_174930	ENSG00000123965	PMS2P5	PMS2L5|PMS7	postmeiotic segregation increased 2 pseudogene 5	pseudo
chr14.75422075.-	chr14	75422075	75422076	-	0	NA	"5' UTR (NM_002632, exon 1 of 7)"	"5' UTR (NM_002632, exon 1 of 7)"	-392	NM_002632	5228	Hs.252820	NM_001207012	ENSG00000119630	PGF	D12S1900|PGFL|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
chrX.152224599.-	chrX	152224599	152224600	-	0	NA	promoter-TSS (NM_013364)	promoter-TSS (NM_013364)	167	NM_013364	29944	Hs.744496	NM_013364	ENSG00000183837	PNMA3	MA3|MA5	paraneoplastic Ma antigen 3	protein-coding
chr22.44763614.-	chr22	44763614	44763615	-	0	NA	Intergenic	Intergenic	54883	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
chr7.5396284.-	chr7	5396284	5396285	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	-66893	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr5.165696020.-	chr5	165696020	165696021	-	0	NA	Intergenic	AluY|SINE|Alu	1015823	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr19.38755122.+	chr19	38755122	38755123	+	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	24	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr10.65213737.+	chr10	65213737	65213738	+	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSx|SINE|Alu	-11252	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr19.14156305.-	chr19	14156305	14156306	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13666	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr16.68279425.-	chr16	68279425	68279426	-	0	NA	"exon (NM_012320, exon 1 of 6)"	"exon (NM_012320, exon 1 of 6)"	-178	NM_012320	23659	Hs.632199	NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	"phospholipase A2, group XV"	protein-coding
chr3.47744580.-	chr3	47744580	47744581	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78825	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr8.139075534.+	chr8	139075534	139075535	+	0	NA	Intergenic	AluSx|SINE|Alu	433531	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	"family with sequence similarity 135, member B"	protein-coding
chr9.6608178.-	chr9	6608178	6608179	-	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	-37514	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr6.33811451.+	chr6	33811451	33811452	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39658	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr13.100353719.+	chr13	100353719	100353720	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluY|SINE|Alu	58406	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr7.157072052.+	chr7	157072052	157072053	+	0	NA	Intergenic	CpG	-57658	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr22.41771520.+	chr22	41771520	41771521	+	0	NA	"intron (NM_001145398, intron 1 of 3)"	AluY|SINE|Alu	-6413	NM_003216	7008	Hs.181159	NM_001145398	ENSG00000167074	TEF	-	thyrotrophic embryonic factor	protein-coding
chr15.41613100.-	chr15	41613100	41613101	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11719	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr4.188471119.-	chr4	188471119	188471120	-	0	NA	Intergenic	AluSg|SINE|Alu	44352	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr1.860977.+	chr1	860977	860978	+	0	NA	promoter-TSS (NM_152486)	promoter-TSS (NM_152486)	-144	NM_152486	148398	Hs.335293	NM_152486	ENSG00000187634	SAMD11	-	sterile alpha motif domain containing 11	protein-coding
chr5.178657988.+	chr5	178657988	178657989	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114443	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr5.178157374.+	chr5	178157374	178157375	+	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	329	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr6.13335718.-	chr6	13335718	13335719	-	0	NA	Intergenic	AluYa5|SINE|Alu	6931	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr17.42869101.-	chr17	42869101	42869102	-	0	NA	Intergenic	AluSx|SINE|Alu	-32533	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr15.41539521.+	chr15	41539521	41539522	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16084	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr20.19987632.+	chr20	19987632	19987633	+	0	NA	Intergenic	AluY|SINE|Alu	-10302	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr8.126398040.+	chr8	126398040	126398041	+	0	NA	Intergenic	Intergenic	-44523	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr2.158052727.+	chr2	158052727	158052728	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61613	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr11.62418745.-	chr11	62418745	62418746	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-2029	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr20.37160901.+	chr20	37160901	37160902	+	0	NA	"intron (NM_020336, intron 14 of 29)"	AluY|SINE|Alu	-48937	NM_001018082	149685	Hs.368028	NM_174906	ENSG00000182035	ADIG	SMAF1	adipogenin	protein-coding
chr1.235475163.+	chr1	235475163	235475164	+	0	NA	"intron (NM_001206794, intron 2 of 23)"	"intron (NM_001206794, intron 2 of 23)"	15639	NM_001206794	51742	Hs.575782	NM_001206794	ENSG00000054267	ARID4B	BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding
chr12.53535536.+	chr12	53535536	53535537	+	0	NA	Intergenic	AluY|SINE|Alu	22741	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr9.133797643.-	chr9	133797643	133797644	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-16596	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr4.123063381.-	chr4	123063381	123063382	-	0	NA	Intergenic	AluSg7|SINE|Alu	28377	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr10.87188451.-	chr10	87188451	87188452	-	0	NA	Intergenic	AluY|SINE|Alu	149037	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	miscRNA
chr17.8061006.+	chr17	8061006	8061007	+	0	NA	Intergenic	AluY|SINE|Alu	-5253	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr1.21380291.-	chr1	21380291	21380292	-	0	NA	"intron (NM_003760, intron 1 of 31)"	SVA_D|Other|Other	-57585	NM_003760	8672	Hs.732241	NM_001198801	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	"eukaryotic translation initiation factor 4 gamma, 3"	protein-coding
chr5.176292940.+	chr5	176292940	176292941	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33393	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr21.42486450.+	chr21	42486450	42486451	+	0	NA	Intergenic	AluSx|SINE|Alu	33541	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	miscRNA
chr10.1137963.-	chr10	1137963	1137964	-	0	NA	"intron (NM_014023, intron 7 of 13)"	AluY|SINE|Alu	-35187	NM_014023	22884	Hs.188495	NM_014023	ENSG00000047056	WDR37	RP11-529L18.2	WD repeat domain 37	protein-coding
chr18.8669976.+	chr18	8669976	8669977	+	0	NA	Intergenic	AluSx1|SINE|Alu	-47393	NM_015210	23255	Hs.707920	NM_015210	ENSG00000168502	SOGA2	CCDC165|KIAA0802	SOGA family member 2	protein-coding
chr7.2943539.-	chr7	2943539	2943540	-	0	NA	Intergenic	Intergenic	59580	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr8.141523798.+	chr8	141523798	141523799	+	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	1717	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr8.22594698.-	chr8	22594698	22594699	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43883	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr7.155151616.+	chr7	155151616	155151617	+	0	NA	Intergenic	Intergenic	62130	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr2.43516900.+	chr2	43516900	43516901	+	0	NA	"intron (NM_022065, intron 34 of 37)"	AluSx|SINE|Alu	62550	NR_027251	100129726	Hs.194480	NM_178529		LOC100129726	-	uncharacterized LOC100129726	miscRNA
chr4.77348121.+	chr4	77348121	77348122	+	0	NA	Intergenic	AluY|SINE|Alu	-8132	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr1.32679284.-	chr1	32679284	32679285	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4589	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr1.28895942.+	chr1	28895942	28895943	+	0	NA	"intron (NM_017846, intron 6 of 8)"	AluY|SINE|Alu	9392	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	"small nucleolar RNA, C/D box 99"	snoRNA
chr20.33283461.+	chr20	33283461	33283462	+	0	NA	Intergenic	AluY|SINE|Alu	-8687	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr12.53681173.-	chr12	53681173	53681174	-	0	NA	"intron (NM_012291, intron 18 of 30)"	AluSx|SINE|Alu	8062	NM_145897	5204	Hs.655327	NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
chr11.62418838.+	chr11	62418838	62418839	+	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	1936	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr11.62436537.-	chr11	62436537	62436538	-	0	NA	"intron (NM_024099, intron 3 of 6)"	AluY|SINE|Alu	2589	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chr16.8974128.-	chr16	8974128	8974129	-	0	NA	Intergenic	Intergenic	11265	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr7.56109513.-	chr7	56109513	56109514	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9755	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr13.45131244.+	chr13	45131244	45131245	+	0	NA	"intron (NM_183422, intron 1 of 2)"	AluSp|SINE|Alu	-18788	NR_038381	641467	Hs.624196	NR_038381		TSC22D1-AS1	-	TSC22D1 antisense RNA 1	miscRNA
chr17.2726589.+	chr17	2726589	2726590	+	0	NA	"intron (NM_015085, intron 2 of 24)"	"intron (NM_015085, intron 2 of 24)"	26857	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr15.75115972.-	chr15	75115972	75115973	-	0	NA	"exon (NM_021819, exon 12 of 14)"	"exon (NM_021819, exon 12 of 14)"	2979	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII	complexin 3	protein-coding
chr7.5334588.-	chr7	5334588	5334589	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12027	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr17.72262240.+	chr17	72262240	72262241	+	0	NA	Intergenic	AluJb|SINE|Alu	-8146	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr4.114652857.-	chr4	114652857	114652858	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30226	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr7.149419744.-	chr7	149419744	149419745	-	0	NA	"intron (NM_032534, intron 6 of 16)"	"intron (NM_032534, intron 6 of 16)"	-7596	NM_032534	84626	Hs.299560	NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
chr1.181058720.-	chr1	181058720	181058721	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1082	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr8.67618037.+	chr8	67618037	67618038	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6616	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr8.70907113.+	chr8	70907113	70907114	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	76449	NM_024504	63978	Hs.736037	NM_024504	ENSG00000147596	PRDM14	PFM11	PR domain containing 14	protein-coding
chr22.50876254.+	chr22	50876254	50876255	+	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	37210	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr2.136760788.+	chr2	136760788	136760789	+	0	NA	Intergenic	AluJb|SINE|Alu	-17566	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr1.212962751.+	chr1	212962751	212962752	+	0	NA	"intron (NM_015471, intron 1 of 5)"	AluSq2|SINE|Alu	2388	NM_015471	25936	Hs.497692	NM_001042549		NSL1	C1orf48|MIS14	"NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr4.72877017.-	chr4	72877017	72877018	-	0	NA	Intergenic	AluY|SINE|Alu	20504	NM_004885	10886	Hs.99231	NM_001144756	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
chr12.50448242.-	chr12	50448242	50448243	-	0	NA	Intergenic	AluSx|SINE|Alu	3178	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr12.34191976.+	chr12	34191976	34191977	+	0	NA	Intergenic	AluSp|SINE|Alu	16760	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr8.41908658.+	chr8	41908658	41908659	+	0	NA	"intron (NM_001099412, intron 1 of 17)"	CpG	847	NM_006766	7994	Hs.491577	NM_001099412	ENSG00000083168	KAT6A	MOZ|MYST3|RUNXBP2|ZC2HC6A|ZNF220	K(lysine) acetyltransferase 6A	protein-coding
chr2.198058473.-	chr2	198058473	198058474	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117048	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr4.17513844.-	chr4	17513844	17513845	-	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	-13	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr7.157129519.+	chr7	157129519	157129520	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-191	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr3.60485365.+	chr3	60485365	60485366	+	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	751768	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr1.228596207.-	chr1	228596207	228596208	-	0	NA	TTS (NM_001134855)	TTS (NM_001134855)	1690	NM_145214	81559	Hs.13543	NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
chr12.51819082.-	chr12	51819082	51819083	-	0	NA	"5' UTR (NM_001258403, exon 1 of 17)"	"5' UTR (NM_001258403, exon 1 of 17)"	-181	NM_001258403	9498	Hs.4749	NM_001039960	ENSG00000050438	SLC4A8	NBC3|NDCBE	"solute carrier family 4, sodium bicarbonate cotransporter, member 8"	protein-coding
chr7.156742384.+	chr7	156742384	156742385	+	0	NA	promoter-TSS (NM_138400)	promoter-TSS (NM_138400)	-33	NM_138400	64434	Hs.15825	NM_138400	ENSG00000146909	NOM1	C7orf3|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
chr17.4453848.-	chr17	4453848	4453849	-	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	-4833	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr1.182583520.-	chr1	182583520	182583521	-	0	NA	promoter-TSS (NR_036490)	promoter-TSS (NR_036490)	755	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LOC284648	-	uncharacterized LOC284648	miscRNA
chr19.58250043.+	chr19	58250043	58250044	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8121	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr10.65617421.+	chr10	65617421	65617422	+	0	NA	Intergenic	L1PA5|LINE|L1	336298	NM_001001330	221035	Hs.499833	NM_001001330	ENSG00000165476	REEP3	C10orf74	receptor accessory protein 3	protein-coding
chr14.21741135.-	chr14	21741135	21741136	-	0	NA	Intergenic	AluSx1|SINE|Alu	3497	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr2.126013226.+	chr2	126013226	126013227	+	0	NA	Intergenic	AluSc8|SINE|Alu	1230362	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr22.43238133.-	chr22	43238133	43238134	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15275	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr7.1147509.+	chr7	1147509	1147510	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19786	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr17.41382387.+	chr17	41382387	41382388	+	0	NA	Intergenic	AluSx|SINE|Alu	-1325	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	miscRNA
chr4.141334766.+	chr4	141334766	141334767	+	0	NA	"intron (NM_004362, intron 1 of 14)"	L1PA2|LINE|L1	14049	NM_001130675	1047	Hs.86368	NM_001130675	ENSG00000153132	CLGN	-	calmegin	protein-coding
chr2.234737397.+	chr2	234737397	234737398	+	0	NA	Intergenic	Intergenic	25815	NM_018410	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
chr2.170684191.-	chr2	170684191	170684192	-	0	NA	"exon (NM_172070, exon 1 of 39)"	"exon (NM_172070, exon 1 of 39)"	-173	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr3.135859553.+	chr3	135859553	135859554	+	0	NA	"intron (NM_001190447, intron 12 of 12)"	AluSp|SINE|Alu	53757	NM_001145417	55167	Hs.18631	NM_001145417	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
chr16.1959148.+	chr16	1959148	1959149	+	0	NA	Intergenic	Intergenic	9083	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr1.32122092.-	chr1	32122092	32122093	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11254	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr4.153858991.+	chr4	153858991	153858992	+	0	NA	Intergenic	CpG	-5144	NM_033393	85462	Hs.742906	NM_033393	ENSG00000137460	FHDC1	-	FH2 domain containing 1	protein-coding
chr16.30951022.+	chr16	30951022	30951023	+	0	NA	"intron (NR_073401, intron 7 of 10)"	AluY|SINE|Alu	-9383	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr1.80177699.-	chr1	80177699	80177700	-	0	NA	Intergenic	AluSx|SINE|Alu	705204	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr4.741105.-	chr4	741105	741106	-	0	NA	"intron (NM_006315, intron 8 of 10)"	CpG	-34531	NR_036512	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	miscRNA
chr5.127418676.+	chr5	127418676	127418677	+	0	NA	promoter-TSS (NM_001046)	promoter-TSS (NM_001046)	90	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	FLJ33630	-	uncharacterized LOC644873	miscRNA
chr12.116724245.-	chr12	116724245	116724246	-	0	NA	Intergenic	AluY|SINE|Alu	9254	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr1.153574082.+	chr1	153574082	153574083	+	0	NA	Intergenic	AluY|SINE|Alu	11432	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr10.118467678.+	chr10	118467678	118467679	+	0	NA	"intron (NM_025015, intron 1 of 11)"	"intron (NM_025015, intron 1 of 11)"	34407	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr19.10587527.+	chr19	10587527	10587528	+	0	NA	Intergenic	AluSq2|SINE|Alu	23894	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr12.121338423.-	chr12	121338423	121338424	-	0	NA	"intron (NM_139015, intron 1 of 10)"	"intron (NM_139015, intron 1 of 10)"	-3732	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr1.221053159.-	chr1	221053159	221053160	-	0	NA	"5' UTR (NM_021958, exon 1 of 4)"	"5' UTR (NM_021958, exon 1 of 4)"	-416	NM_021958	3142	Hs.74870	NM_021958		HLX	HB24|HLX1	H2.0-like homeobox	protein-coding
chr11.68303155.+	chr11	68303155	68303156	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74969	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr20.33283448.+	chr20	33283448	33283449	+	0	NA	Intergenic	AluY|SINE|Alu	-8700	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr21.33245145.+	chr21	33245145	33245146	+	0	NA	promoter-TSS (NM_014586)	promoter-TSS (NM_014586)	-483	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr10.133203440.-	chr10	133203440	133203441	-	0	NA	Intergenic	Intergenic	93456	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr7.8301154.+	chr7	8301154	8301155	+	0	NA	"intron (NM_004968, intron 1 of 13)"	CpG	528	NM_022307	3382	Hs.487561	NM_001136020	ENSG00000003147	ICA1	ICA69|ICAp69	"islet cell autoantigen 1, 69kDa"	protein-coding
chr15.91370871.+	chr15	91370871	91370872	+	0	NA	Intergenic	AluSz|SINE|Alu	-41014	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr16.656859.-	chr16	656859	656860	-	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	-16686	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr2.131551986.+	chr2	131551986	131551987	+	0	NA	Intergenic	AluY|SINE|Alu	38122	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr8.52446925.+	chr8	52446925	52446926	+	0	NA	"intron (NM_144651, intron 4 of 22)"	SVA_F|Other|Other	275080	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr7.158790488.-	chr7	158790488	158790489	-	0	NA	Intergenic	Intergenic	10557	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr5.154167986.+	chr5	154167986	154167987	+	0	NA	"intron (NM_015315, intron 1 of 18)"	"intron (NM_015315, intron 1 of 18)"	62227	NM_032385	10826	Hs.713175	NM_016348	ENSG00000170271	FAXDC2	C5orf4	fatty acid hydroxylase domain containing 2	protein-coding
chr12.57177815.-	chr12	57177815	57177816	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20707	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr5.179173233.+	chr5	179173233	179173234	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluSx1|SINE|Alu	13382	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr9.139085515.-	chr9	139085515	139085516	-	0	NA	Intergenic	CpG	-9489	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr3.53871850.-	chr3	53871850	53871851	-	0	NA	"intron (NM_018397, intron 2 of 8)"	AluSz6|SINE|Alu	-8570	NM_018397	55349	Hs.729536	NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
chr9.10974555.-	chr9	10974555	10974556	-	0	NA	Intergenic	L1PBa|LINE|L1	361832	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.131551998.+	chr2	131551998	131551999	+	0	NA	Intergenic	AluY|SINE|Alu	38134	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr2.106682172.-	chr2	106682172	106682173	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-59	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr6.12662821.-	chr6	12662821	12662822	-	0	NA	Intergenic	AluSg|SINE|Alu	54216	NM_001242648	221692	Hs.436996	NM_001242648		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
chr19.9999704.-	chr19	9999704	9999705	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluY|SINE|Alu	-47366	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr10.5680220.-	chr10	5680220	5680221	-	0	NA	TTS (NR_024581)	TTS (NR_024581)	-28338	NR_037164	79754	Hs.445899	NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
chr14.32406424.+	chr14	32406424	32406425	+	0	NA	Intergenic	AluYa5|SINE|Alu	139481	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	miscRNA
chr15.100080075.-	chr15	100080075	100080076	-	0	NA	Intergenic	AluSq2|SINE|Alu	26058	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr22.48136487.+	chr22	48136487	48136488	+	0	NA	Intergenic	Intergenic	-109169	NR_033377	400932	Hs.561058	NM_001001693	ENSG00000205634	FLJ46257	-	uncharacterized LOC400932	miscRNA
chr11.65816578.+	chr11	65816578	65816579	+	0	NA	promoter-TSS (NM_033036)	promoter-TSS (NM_033036)	73	NM_033036	89792	Hs.208343	NM_033036		GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
chr19.54076848.-	chr19	54076848	54076849	-	0	NA	"intron (NM_001253798, intron 6 of 6)"	AluJb|SINE|Alu	-18287	NM_001079907	55422	Hs.185674	NM_001079906	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
chr2.241316337.+	chr2	241316337	241316338	+	0	NA	Intergenic	Intergenic	-58778	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr7.75268132.-	chr7	75268132	75268133	-	0	NA	"intron (NM_001243198, intron 1 of 28)"	CpG	-100151	NM_005338	3092	Hs.619089	NM_001243198	ENSG00000127946	HIP1	ILWEQ	huntingtin interacting protein 1	protein-coding
chr12.56394819.-	chr12	56394819	56394820	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3776	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr6.4780654.+	chr6	4780654	4780655	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3974	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr22.51010947.-	chr22	51010947	51010948	-	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	-5559	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr19.1453933.+	chr19	1453933	1453934	+	0	NA	"intron (NM_005883, intron 4 of 14)"	"intron (NM_005883, intron 4 of 14)"	3785	NM_005883	10297	Hs.446376	NM_005883	ENSG00000115266	APC2	APCL	adenomatosis polyposis coli 2	protein-coding
chr16.3019441.-	chr16	3019441	3019442	-	0	NA	promoter-TSS (NM_152341)	promoter-TSS (NM_152341)	-99	NM_152341	124222	Hs.351474	NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member IV	protein-coding
chr1.54775680.+	chr1	54775680	54775681	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96299	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr2.126700575.-	chr2	126700575	126700576	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712936	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr2.223468822.-	chr2	223468822	223468823	-	0	NA	"intron (NM_005687, intron 15 of 16)"	AluY|SINE|Alu	-52005	NM_005687	10056	Hs.471452	NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|PheHB|PheRS	"phenylalanyl-tRNA synthetase, beta subunit"	protein-coding
chr7.65598395.-	chr7	65598395	65598396	-	0	NA	"intron (NR_024548, intron 4 of 6)"	AluY|SINE|Alu	-18590	NM_001040647	27297	Hs.300684	NM_001040647	ENSG00000241258	CRCP	CGRP-RCP|CGRPRCP|RCP|RCP9	CGRP receptor component	protein-coding
chr13.111268286.-	chr13	111268286	111268287	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-355	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr5.176292819.+	chr5	176292819	176292820	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33514	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr17.7246092.-	chr17	7246092	7246093	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6244	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chrX.81762802.+	chrX	81762802	81762803	+	0	NA	Intergenic	AluY|SINE|Alu	-1000467	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chrX.29933243.+	chrX	29933243	29933244	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300432	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr6.170055321.-	chr6	170055321	170055322	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46838	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr19.58932935.+	chr19	58932935	58932936	+	0	NA	Intergenic	AluSg|SINE|Alu	12872	NM_173548	201514	Hs.439551	NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
chr8.141523827.+	chr8	141523827	141523828	+	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	1746	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr2.213546676.-	chr2	213546676	213546677	-	0	NA	Intergenic	AluSc8|SINE|Alu	143324	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr2.130902845.-	chr2	130902845	130902846	-	0	NA	promoter-TSS (NM_001258307)	promoter-TSS (NM_001258307)	138	NM_207310	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chrX.21676552.-	chrX	21676552	21676553	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	104	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr9.141111326.-	chr9	141111326	141111327	-	0	NA	"intron (NM_001145249, intron 3 of 6)"	AluSc8|SINE|Alu	-4689	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	"family with sequence similarity 157, member B"	protein-coding
chr1.162040552.+	chr1	162040552	162040553	+	0	NA	"intron (NM_014697, intron 1 of 9)"	"intron (NM_014697, intron 1 of 9)"	971	NM_014697	9722	Hs.731942	NM_001126060	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding
chr2.202092444.+	chr2	202092444	202092445	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5722	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chrX.54371312.-	chrX	54371312	54371313	-	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	-13126	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr11.1266531.+	chr11	1266531	1266532	+	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	22236	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr19.813080.+	chr19	813080	813081	+	0	NA	promoter-TSS (NR_036154)	promoter-TSS (NR_036154)	-504	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	-	microRNA 3187	miscRNA
chr14.52633544.+	chr14	52633544	52633545	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-97598	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
chr5.89746466.-	chr5	89746466	89746467	-	0	NA	Intergenic	AluSz|SINE|Alu	-24119	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr9.95526678.-	chr9	95526678	95526679	-	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	-405	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr6.25384265.-	chr6	25384265	25384266	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104609	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr13.114929678.+	chr13	114929678	114929679	+	0	NA	Intergenic	Intergenic	-31583	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr17.75059710.+	chr17	75059710	75059711	+	0	NA	Intergenic	AluY|SINE|Alu	-25015	NM_001204408	6397	Hs.464184	NM_001039573	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
chr5.145583182.-	chr5	145583182	145583183	-	0	NA	promoter-TSS (NM_018989)	promoter-TSS (NM_018989)	-19	NM_018989	54439	Hs.61441	NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18	RNA binding motif protein 27	protein-coding
chr3.174240476.+	chr3	174240476	174240477	+	0	NA	Intergenic	AluY|SINE|Alu	-336635	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr4.109524412.-	chr4	109524412	109524413	-	0	NA	"intron (NR_026968, intron 1 of 3)"	AluSx1|SINE|Alu	-17201	NR_026968	285456	Hs.683863	NM_182591	ENSG00000234492	RPL34-AS1	-	RPL34 antisense RNA 1 (head to head)	miscRNA
chr3.53225265.-	chr3	53225265	53225266	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-30042	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr19.2492337.-	chr19	2492337	2492338	-	0	NA	Intergenic	AluSz|SINE|Alu	-16214	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr3.137896885.-	chr3	137896885	137896886	-	0	NA	Intergenic	AluSg|SINE|Alu	3094	NM_016216	51163	Hs.477700	NM_016216	ENSG00000138231	DBR1	-	debranching enzyme homolog 1 (S. cerevisiae)	protein-coding
chr16.1807913.+	chr16	1807913	1807914	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13797	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr10.129602617.-	chr10	129602617	129602618	-	0	NA	Intergenic	AluYk11|SINE|Alu	-67079	NM_207426	399823	Hs.449674	NM_207426	ENSG00000186766	FOXI2	-	forkhead box I2	protein-coding
chr21.47838716.-	chr21	47838716	47838717	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40146	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr3.122695628.+	chr3	122695628	122695629	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-647	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr17.7308372.-	chr17	7308372	7308373	-	0	NA	promoter-TSS (NM_152766)	promoter-TSS (NM_152766)	922	NM_152766	254863	Hs.730789	NM_152766	ENSG00000205544	TMEM256	C17orf61	transmembrane protein 256	protein-coding
chr7.33176766.-	chr7	33176766	33176767	-	0	NA	"intron (NM_014451, intron 1 of 20)"	MER52D|LTR|ERV1	-7614	NM_001033605	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr10.104255196.+	chr10	104255196	104255197	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7316	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr17.8061043.-	chr17	8061043	8061044	-	0	NA	Intergenic	AluY|SINE|Alu	-5250	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr6.159228107.-	chr6	159228107	159228108	-	0	NA	"intron (NM_003379, intron 1 of 12)"	AluY|SINE|Alu	-11233	NM_003379	7430	Hs.487027	NM_001111077	ENSG00000092820	EZR	CVIL|CVL|VIL2	ezrin	protein-coding
chr15.83365814.-	chr15	83365814	83365815	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12821	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chrX.53123408.+	chrX	53123408	53123409	+	0	NA	Intergenic	CpG	11866	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.13141825.-	chr7	13141825	13141826	-	0	NA	Intergenic	SVA_D|Other|Other	-414914	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr19.14156311.-	chr19	14156311	14156312	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13660	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr9.137200935.+	chr9	137200935	137200936	+	0	NA	Intergenic	Intergenic	-17381	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr5.118852883.+	chr5	118852883	118852884	+	0	NA	"intron (NM_001199291, intron 18 of 24)"	LTR12C|LTR|ERV1	64681	NM_001199291	3295	Hs.406861	NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding
chr5.69056906.-	chr5	69056906	69056907	-	0	NA	Intergenic	AluYa5|SINE|Alu	50634	NR_027386	653188	Hs.654588	NR_027386	ENSG00000253203	GUSBP3	-	"glucuronidase, beta pseudogene 3"	pseudo
chr6.150275479.+	chr6	150275479	150275480	+	0	NA	Intergenic	CpG	-9664	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr15.24084641.-	chr15	24084641	24084642	-	0	NA	Intergenic	AluY|SINE|Alu	152191	NM_002487	4692	Hs.50130	NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	"necdin, melanoma antigen (MAGE) family member"	protein-coding
chr2.209242306.-	chr2	209242306	209242307	-	0	NA	"intron (NR_073601, intron 1 of 12)"	SVA_C|Other|Other	-17737	NR_073601	5746	Hs.570296	NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
chr4.103422423.-	chr4	103422423	103422424	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	63	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr10.103852118.+	chr10	103852118	103852119	+	0	NA	Intergenic	AluSc|SINE|Alu	22605	NM_003893	8861	Hs.454418	NM_001113407	ENSG00000198728	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
chr2.240401986.-	chr2	240401986	240401987	-	0	NA	Intergenic	Intergenic	79343	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr10.104209702.+	chr10	104209702	104209703	+	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	128	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr2.100106941.-	chr2	100106941	100106942	-	0	NA	promoter-TSS (NM_016316)	promoter-TSS (NM_016316)	461	NM_001037872	51455	Hs.443077	NM_001037872	ENSG00000135945	REV1	REV1L	"REV1, polymerase (DNA directed)"	protein-coding
chr3.20070764.-	chr3	20070764	20070765	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10760	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr4.77488568.-	chr4	77488568	77488569	-	0	NA	"intron (NM_020859, intron 2 of 10)"	AluY|SINE|Alu	6153	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	miscRNA
chr2.242500466.-	chr2	242500466	242500467	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1908	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr3.42922652.+	chr3	42922652	42922653	+	0	NA	Intergenic	CpG	-5019	NM_004391	1582	Hs.722743	NM_004391	ENSG00000180432	CYP8B1	CP8B|CYP12	"cytochrome P450, family 8, subfamily B, polypeptide 1"	protein-coding
chr11.92637326.-	chr11	92637326	92637327	-	0	NA	Intergenic	AluY|SINE|Alu	65463	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr4.955129.+	chr4	955129	955130	+	0	NA	"intron (NM_001347, intron 21 of 22)"	"intron (NM_001347, intron 21 of 22)"	12219	NM_001347	1609	Hs.584858	NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	"diacylglycerol kinase, theta 110kDa"	protein-coding
chr22.17090862.+	chr22	17090862	17090863	+	0	NA	"intron (NR_001591, intron 1 of 8)"	CpG	8061	NR_001591	387590	Hs.474116	NR_001591	ENSG00000100181	TPTEP1	psiTPTE22	transmembrane phosphatase with tensin homology pseudogene 1	pseudo
chr2.58008302.+	chr2	58008302	58008303	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265475	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr3.98624716.+	chr3	98624716	98624717	+	0	NA	Intergenic	AluY|SINE|Alu	-4183	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr22.24323647.-	chr22	24323647	24323648	-	0	NA	"intron (NM_000854, intron 2 of 4)"	AluY|SINE|Alu	-1333	NM_000854	2953	Hs.654462	NM_000854	ENSG00000099984	GSTT2	GSTT2B	glutathione S-transferase theta 2	protein-coding
chr11.105759244.+	chr11	105759244	105759245	+	0	NA	"intron (NM_000829, intron 6 of 16)"	AluYa5|SINE|Alu	133710	NM_032424	84437	Hs.266782	NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
chr11.92637336.+	chr11	92637336	92637337	+	0	NA	Intergenic	AluY|SINE|Alu	-65453	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr21.44582115.-	chr21	44582115	44582116	-	0	NA	Intergenic	Intergenic	7026	NM_000394	1409	Hs.184085	NM_000394	ENSG00000160202	CRYAA	CRYA1|HSPB4	"crystallin, alpha A"	protein-coding
chr20.17661350.-	chr20	17661350	17661351	-	0	NA	"intron (NM_001042576, intron 1 of 25)"	MIRb|SINE|MIR	-1578	NM_004587	6238	Hs.472213	NM_001042576	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES	ribosome binding protein 1	protein-coding
chrM.6547.+	chrM	6547	6548	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr20.17960326.+	chr20	17960326	17960327	+	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	10564	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr3.101291366.-	chr3	101291366	101291367	-	0	NA	Intergenic	AluSg|SINE|Alu	1676	NM_020357	57092	Hs.275865	NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
chr6.108315271.+	chr6	108315271	108315272	+	0	NA	Intergenic	AluSz|SINE|Alu	-35789	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr17.2636648.-	chr17	2636648	2636649	-	0	NA	Intergenic	AluSp|SINE|Alu	-14828	NR_031654	100302208		NR_031654	ENSG00000221200	MIR1253	MIRN1253|hsa-mir-1253	microRNA 1253	miscRNA
chrX.21676560.-	chrX	21676560	21676561	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	112	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chrX.51075609.+	chrX	51075609	51075610	+	0	NA	"intron (NM_153183, intron 1 of 2)"	CpG	526	NM_153183	170685	Hs.375178	NM_153183	ENSG00000122824	NUDT10	APS2|DIPP3a|hDIPP3alpha	nudix (nucleoside diphosphate linked moiety X)-type motif 10	protein-coding
chr4.69917108.+	chr4	69917108	69917109	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-30995	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr7.25609214.-	chr7	25609214	25609215	-	0	NA	Intergenic	AluSz|SINE|Alu	-271416	NR_046486	100873753		NR_046486		RNU6-16	-	"RNA, U6 small nuclear 16"	snRNA
chr3.57717806.+	chr3	57717806	57717807	+	0	NA	Intergenic	AluSx|SINE|Alu	-25368	NM_007159	7871	Hs.476432	NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
chr12.110031039.+	chr12	110031039	110031040	+	0	NA	"intron (NM_000431, intron 9 of 10)"	"intron (NM_000431, intron 9 of 10)"	19539	NM_001114185	4598	Hs.130607	NM_000431	ENSG00000110921	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding
chr1.10727936.-	chr1	10727936	10727937	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128797	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr22.50959112.+	chr22	50959112	50959113	+	0	NA	TTS (NM_014551)	TTS (NM_014551)	4921	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr1.158012627.+	chr1	158012627	158012628	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49564	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr9.139071865.+	chr9	139071865	139071866	+	0	NA	Intergenic	Intergenic	23139	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr1.47184811.+	chr1	47184811	47184812	+	0	NA	promoter-TSS (NM_014774)	promoter-TSS (NM_014774)	-75	NM_014774	9813	Hs.707535	NM_014774	ENSG00000159658	EFCAB14	KIAA0494|RP11-8J9.3	EF-hand calcium binding domain 14	protein-coding
chr7.1474505.-	chr7	1474505	1474506	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24604	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr17.22012653.+	chr17	22012653	22012654	+	0	NA	Intergenic	Intergenic	-9784	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr9.101868133.-	chr9	101868133	101868134	-	0	NA	"intron (NM_001130916, intron 1 of 7)"	CpG	-721	NM_004612	7046	Hs.494622	NM_001130916	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|LDS1A|LDS2A|MSSE|SKR4|TGFR-1	"transforming growth factor, beta receptor 1"	protein-coding
chr16.209975.+	chr16	209975	209976	+	0	NA	Intergenic	Intergenic	-5998	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chrX.81762778.+	chrX	81762778	81762779	+	0	NA	Intergenic	AluY|SINE|Alu	-1000491	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr6.8388443.-	chr6	8388443	8388444	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47351	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr11.2051324.-	chr11	2051324	2051325	-	0	NA	Intergenic	Intergenic	32259	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr1.152007238.-	chr1	152007238	152007239	-	0	NA	"intron (NM_005620, intron 1 of 2)"	"intron (NM_005620, intron 1 of 2)"	-2273	NM_005620	6282	Hs.417004	NM_005620	ENSG00000163191	S100A11	MLN70|S100C	S100 calcium binding protein A11	protein-coding
chr4.163164084.-	chr4	163164084	163164085	-	0	NA	Intergenic	Intergenic	78898	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr17.34053888.+	chr17	34053888	34053889	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4791	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr3.52918411.+	chr3	52918411	52918412	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13186	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr16.47071794.-	chr16	47071794	47071795	-	0	NA	Intergenic	CpG	64169	NM_005880	10294	Hs.368078	NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	"DnaJ (Hsp40) homolog, subfamily A, member 2"	protein-coding
chr14.64299495.+	chr14	64299495	64299496	+	0	NA	Intergenic	AluJb|SINE|Alu	-20188	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr2.115918913.-	chr2	115918913	115918914	-	0	NA	promoter-TSS (NM_001004360)	promoter-TSS (NM_001004360)	-7	NR_036580	389023	Hs.97540	NR_036580	ENSG00000235026	LOC389023	-	uncharacterized LOC389023	miscRNA
chr2.187019208.-	chr2	187019208	187019209	-	0	NA	Intergenic	SVA_F|Other|Other	331677	NM_018471	55854	Hs.741180	NM_018471	ENSG00000065548	ZC3H15	HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
chr4.42094099.-	chr4	42094099	42094100	-	0	NA	Intergenic	AluY|SINE|Alu	-60796	NM_207406	389206	Hs.120591	NM_001159547	ENSG00000188848	BEND4	CCDC4	BEN domain containing 4	protein-coding
chr5.179383842.+	chr5	179383842	179383843	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-48986	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr19.50670096.+	chr19	50670096	50670097	+	0	NA	Intergenic	AluSg|SINE|Alu	-3558	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr16.54853728.-	chr16	54853728	54853729	-	0	NA	Intergenic	AluSg7|SINE|Alu	-108962	NR_034106	643911	Hs.237396	NR_034105		CRNDE	LINC00180|NCRNA00180	colorectal neoplasia differentially expressed (non-protein coding)	miscRNA
chr13.113863759.+	chr13	113863759	113863760	+	0	NA	promoter-TSS (NM_018386)	promoter-TSS (NM_018386)	-172	NM_001008895	8451	Hs.339735	NM_001008895	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
chrX.39953491.-	chrX	39953491	39953492	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	CpG	-3228	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr3.36494779.-	chr3	36494779	36494780	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72682	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr18.11959896.+	chr18	11959896	11959897	+	0	NA	Intergenic	SVA_D|Other|Other	-21531	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr7.72991459.+	chr7	72991459	72991460	+	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	1554	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr6.126111984.+	chr6	126111984	126111985	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	75	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.183551422.-	chr2	183551422	183551423	-	0	NA	Intergenic	L1PA5|LINE|L1	29346	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr4.140223164.+	chr4	140223164	140223165	+	0	NA	promoter-TSS (NM_002494)	promoter-TSS (NM_002494)	488	NM_057175	80155	Hs.555985	NM_057175	ENSG00000164134	NAA15	Ga19|NARG1|NATH|TBDN100	"N(alpha)-acetyltransferase 15, NatA auxiliary subunit"	protein-coding
chr16.67519957.-	chr16	67519957	67519958	-	0	NA	Intergenic	AluY|SINE|Alu	2241	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr10.133203401.+	chr10	133203401	133203402	+	0	NA	Intergenic	Intergenic	-93417	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr16.12223899.-	chr16	12223899	12223900	-	0	NA	"intron (NM_032167, intron 13 of 20)"	AluSc8|SINE|Alu	-153297	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr10.26961208.-	chr10	26961208	26961209	-	0	NA	Intergenic	AluSq2|SINE|Alu	25387	NM_014317	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1	"prenyl (decaprenyl) diphosphate synthase, subunit 1"	protein-coding
chr14.105242459.+	chr14	105242459	105242460	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17479	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr17.76521085.+	chr17	76521085	76521086	+	0	NA	"intron (NM_173628, intron 25 of 80)"	"intron (NM_173628, intron 25 of 80)"	40093	NR_102401	100996295	Hs.638630	XM_003846285		LOC100996295	-	uncharacterized LOC100996295	miscRNA
chr3.195928224.+	chr3	195928224	195928225	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSx1|SINE|Alu	10076	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr6.4780650.+	chr6	4780650	4780651	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3970	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr2.58077687.-	chr2	58077687	58077688	-	0	NA	Intergenic	Intergenic	196090	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr9.28865668.+	chr9	28865668	28865669	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluSc8|SINE|Alu	-1964	NR_030597	100126310		NR_030597	ENSG00000215966	MIR876	MIRN876|hsa-mir-876	microRNA 876	miscRNA
chr12.121338287.+	chr12	121338287	121338288	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3868	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr4.87023928.+	chr4	87023928	87023929	+	0	NA	"intron (NM_138981, intron 1 of 8)"	AluSc8|SINE|Alu	4878	NM_138981	5602	Hs.125503	NM_002753	ENSG00000109339	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chr1.37546489.-	chr1	37546489	37546490	-	0	NA	Intergenic	SVA_D|Other|Other	46645	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr11.128646784.-	chr11	128646784	128646785	-	0	NA	"intron (NM_002017, intron 4 of 8)"	"intron (NM_002017, intron 4 of 8)"	-65645	NM_000220	3758	Hs.527830	NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	"potassium inwardly-rectifying channel, subfamily J, member 1"	protein-coding
chr16.3733105.-	chr16	3733105	3733106	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30165	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr1.27503562.+	chr1	27503562	27503563	+	0	NA	Intergenic	Intergenic	-21941	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr16.50084192.+	chr16	50084192	50084193	+	0	NA	Intergenic	AluSz|SINE|Alu	-15689	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr17.26336750.+	chr17	26336750	26336751	+	0	NA	Intergenic	AluSz|SINE|Alu	-32938	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr7.1156147.-	chr7	1156147	1156148	-	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	-21746	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chr7.21370263.-	chr7	21370263	21370264	-	0	NA	Intergenic	MER52D|LTR|ERV1	97426	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr6.33500262.-	chr6	33500262	33500263	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47808	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr4.1400175.-	chr4	1400175	1400176	-	0	NA	Intergenic	CpG	-14835	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr4.164318649.-	chr4	164318649	164318650	-	0	NA	Intergenic	AluY|SINE|Alu	-53558	NM_006174	4889	Hs.598503	NM_006174	ENSG00000164129	NPY5R	NPY5-R|NPYR5|NPYY5-R	neuropeptide Y receptor Y5	protein-coding
chr7.148597584.+	chr7	148597584	148597585	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16143	NM_001203247	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr16.84670315.-	chr16	84670315	84670316	-	0	NA	Intergenic	AluY|SINE|Alu	11816	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr2.147734704.+	chr2	147734704	147734705	+	0	NA	Intergenic	AluSx3|SINE|Alu	390079	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	"poly(A) binding protein, cytoplasmic 1 pseudogene 2"	pseudo
chr3.185541155.+	chr3	185541155	185541156	+	0	NA	"intron (NM_006548, intron 1 of 15)"	CpG	1672	NM_006548	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr3.171366594.+	chr3	171366594	171366595	+	0	NA	"intron (NM_002662, intron 21 of 26)"	AluY|SINE|Alu	161690	NM_001130081	5337	Hs.382865	NM_001130081	ENSG00000075651	PLD1	-	"phospholipase D1, phosphatidylcholine-specific"	protein-coding
chr20.34266374.+	chr20	34266374	34266375	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13496	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr19.267143.+	chr19	267143	267144	+	0	NA	Intergenic	CpG	24026	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr20.57372805.-	chr20	57372805	57372806	-	0	NA	Intergenic	HAL1|LINE|L1	-19944	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr4.4165471.-	chr4	4165471	4165472	-	0	NA	Intergenic	HERVE-int|LTR|ERV1	-63150	NM_177998	133060	Hs.534544	NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
chr2.202738593.-	chr2	202738593	202738594	-	0	NA	"intron (NM_139158, intron 11 of 13)"	AluSx|SINE|Alu	-67291	NM_001261436	65061	Hs.348711	NM_001261435	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin-dependent kinase 15	protein-coding
chr22.46959581.-	chr22	46959581	46959582	-	0	NA	Intergenic	Intergenic	26514	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr19.267120.+	chr19	267120	267121	+	0	NA	Intergenic	CpG	24049	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr17.7198733.+	chr17	7198733	7198734	+	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	-857	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr7.1707459.-	chr7	1707459	1707460	-	0	NA	Intergenic	CpG	41339	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr1.103215023.-	chr1	103215023	103215024	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	-359029	NM_080630	1301	Hs.523446	NM_001190709	ENSG00000060718	COL11A1	CO11A1|COLL6|STL2	"collagen, type XI, alpha 1"	protein-coding
chr22.46394270.-	chr22	46394270	46394271	-	0	NA	Intergenic	Intergenic	8226	NR_027240	730668	Hs.640071	NR_027240		LOC730668	-	dynein heavy chain -like pseudogene	pseudo
chr10.324386.-	chr10	324386	324387	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98452	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr2.238875819.-	chr2	238875819	238875820	-	0	NA	"intron (NR_037904, intron 1 of 18)"	CpG	-232	NR_037904	100533179	Hs.471785	NR_037904		UBE2F-SCLY	-	UBE2F-SCLY readthrough	miscRNA
chr21.9827478.+	chr21	9827478	9827479	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	1275	NR_037458	100500815		NR_037458	ENSG00000264063	MIR3687	-	microRNA 3687	miscRNA
chr15.100514121.+	chr15	100514121	100514122	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-166989	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr7.821288.+	chr7	821288	821289	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33906	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr1.109995466.+	chr1	109995466	109995467	+	0	NA	Intergenic	AluY|SINE|Alu	-13634	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr12.113494346.-	chr12	113494346	113494347	-	0	NA	Intergenic	Intergenic	1316	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr5.95297257.+	chr5	95297257	95297258	+	0	NA	"intron (NM_012081, intron 1 of 11)"	CpG	518	NM_012081	22936	Hs.708710	NM_012081	ENSG00000118985	ELL2	-	"elongation factor, RNA polymerase II, 2"	protein-coding
chr22.22259538.+	chr22	22259538	22259539	+	0	NA	Intergenic	AluSc5|SINE|Alu	-37568	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr1.47698124.-	chr1	47698124	47698125	-	0	NA	Intergenic	CpG	2681	NM_003189	6886	Hs.705618	NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	T-cell acute lymphocytic leukemia 1	protein-coding
chr15.41613136.-	chr15	41613136	41613137	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11683	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr3.124468915.-	chr3	124468915	124468916	-	0	NA	TTS (NM_000373)	TTS (NM_000373)	-19702	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr2.27588368.+	chr2	27588368	27588369	+	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	4551	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr11.64774844.+	chr11	64774844	64774845	+	0	NA	Intergenic	AluSz|SINE|Alu	-6741	NM_001667	402	Hs.502836	NM_001199745	ENSG00000213465	ARL2	ARFL2	ADP-ribosylation factor-like 2	protein-coding
chr7.83302720.+	chr7	83302720	83302721	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-24241	NM_012431	9723	Hs.528721	NM_001178129	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E"	protein-coding
chr18.43787448.+	chr18	43787448	43787449	+	0	NA	"intron (NM_001008239, intron 1 of 3)"	AluSg|SINE|Alu	33460	NM_145055	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr17.17894809.+	chr17	17894809	17894810	+	0	NA	"intron (NM_031294, intron 5 of 13)"	AluSc8|SINE|Alu	18682	NM_001130092	83450	Hs.579264	NM_001130090	ENSG00000171962	LRRC48	-	leucine rich repeat containing 48	protein-coding
chr18.21826573.-	chr18	21826573	21826574	-	0	NA	"intron (NM_001242508, intron 3 of 15)"	AluSx|SINE|Alu	-25623	NM_018030	114876	Hs.370725	NM_001242508	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
chr7.2297200.+	chr7	2297200	2297201	+	0	NA	"intron (NM_013321, intron 8 of 10)"	CpG-23885	14660	NM_198953	4521	Hs.534331	NM_002452	ENSG00000106268	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
chr19.9311200.+	chr19	9311200	9311201	+	0	NA	Intergenic	AluSc8|SINE|Alu	14347	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr4.178730005.+	chr4	178730005	178730006	+	0	NA	"intron (NR_028342, intron 2 of 5)"	AluY|SINE|Alu	80094	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LOC285501	-	uncharacterized LOC285501	miscRNA
chr4.149686297.+	chr4	149686297	149686298	+	0	NA	Intergenic	AluJb|SINE|Alu	-322625	NM_001166104	4306	Hs.163924	NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	"nuclear receptor subfamily 3, group C, member 2"	protein-coding
chr14.106359698.-	chr14	106359698	106359699	-	0	NA	Intergenic	Intergenic	24140	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr17.29255137.+	chr17	29255137	29255138	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6383	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr4.157892963.-	chr4	157892963	157892964	-	0	NA	promoter-TSS (NR_036641)	promoter-TSS (NR_036641)	417	NR_036641	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
chr13.51885855.-	chr13	51885855	51885856	-	0	NA	Intergenic	AluSx|SINE|Alu	29313	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr7.151553831.+	chr7	151553831	151553832	+	0	NA	"intron (NM_016203, intron 1 of 15)"	"intron (NM_016203, intron 1 of 15)"	-20296	NR_038926	100505483	Hs.649054	NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	miscRNA
chr20.34266400.+	chr20	34266400	34266401	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13522	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr19.15718042.+	chr19	15718042	15718043	+	0	NA	Intergenic	AluY|SINE|Alu	-7987	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr20.33283459.-	chr20	33283459	33283460	-	0	NA	Intergenic	AluY|SINE|Alu	8689	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr19.549198.+	chr19	549198	549199	+	0	NA	"intron (NM_001258351, intron 4 of 4)"	"intron (NM_001258351, intron 4 of 4)"	5164	NM_005317	3004	Hs.465511	NM_001258351	ENSG00000197540	GZMM	LMET1|MET1	granzyme M (lymphocyte met-ase 1)	protein-coding
chrX.39680382.-	chrX	39680382	39680383	-	0	NA	Intergenic	CpG	-276337	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr17.22012679.-	chr17	22012679	22012680	-	0	NA	Intergenic	Intergenic	9758	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr22.17601520.+	chr22	17601520	17601521	+	0	NA	"exon (NM_031890, exon 1 of 1)"	"exon (NM_031890, exon 1 of 1)"	693	NM_031890	27439	Hs.209577	NM_001163079	ENSG00000183307	CECR6	-	"cat eye syndrome chromosome region, candidate 6"	protein-coding
chr12.49035832.+	chr12	49035832	49035833	+	0	NA	Intergenic	SVA_A|Other|Other	12469	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr12.33592618.-	chr12	33592618	33592619	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-136	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr6.58399794.-	chr6	58399794	58399795	-	0	NA	Intergenic	Intergenic	112070	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr12.51681503.-	chr12	51681503	51681504	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17301	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr8.146024428.-	chr8	146024428	146024429	-	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	-167	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chrX.13062314.+	chrX	13062314	13062315	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	603	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr17.78021092.-	chr17	78021092	78021093	-	0	NA	"exon (NM_001243342, exon 4 of 18)"	"exon (NM_001243342, exon 4 of 18)"	-10661	NM_017950	55036	Hs.202542	NM_001243342	ENSG00000141519	CCDC40	CILD15	coiled-coil domain containing 40	protein-coding
chr2.71357879.+	chr2	71357879	71357880	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	435	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr10.102982388.-	chr10	102982388	102982389	-	0	NA	Intergenic	CpG	-6329	NM_006562	10660	Hs.37128	NM_006562		LBX1	HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
chr2.234169726.-	chr2	234169726	234169727	-	0	NA	"intron (NM_198890, intron 2 of 13)"	AluY|SINE|Alu	-9509	NM_030803	55054	Hs.529322	NM_001190266	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
chr18.20716070.-	chr18	20716070	20716071	-	0	NA	"exon (NM_001100619, exon 1 of 10)"	"exon (NM_001100619, exon 1 of 10)"	-343	NM_001100619	91768	Hs.11108	NM_001100619	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
chr18.11959847.+	chr18	11959847	11959848	+	0	NA	Intergenic	SVA_D|Other|Other	-21580	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr1.102084480.+	chr1	102084480	102084481	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-253087	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	"DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5"	pseudo
chr19.10041242.-	chr19	10041242	10041243	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5828	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr10.133869120.+	chr10	133869120	133869121	+	0	NA	Intergenic	Intergenic	-49193	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr10.123734471.+	chr10	123734471	123734472	+	0	NA	"exon (NM_001167865, exon 1 of 11)"	"exon (NM_001167865, exon 1 of 11)"	272	NM_001167865	54780	Hs.258798	NM_001167865	ENSG00000107672	NSMCE4A	C10orf86|NS4EA|NSE4A	non-SMC element 4 homolog A (S. cerevisiae)	protein-coding
chr16.63163703.-	chr16	63163703	63163704	-	0	NA	Intergenic	LTR12C|LTR|ERV1	1092964	NM_001796	1006	Hs.368322	NM_001796		CDH8	Nbla04261	"cadherin 8, type 2"	protein-coding
chr3.122695620.-	chr3	122695620	122695621	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	639	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr1.46189888.-	chr1	46189888	46189889	-	0	NA	"intron (NM_005897, intron 5 of 8)"	SVA_E|Other|Other	-26597	NM_001145349	3652	Hs.744252	NM_001145349	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
chr2.16600681.+	chr2	16600681	16600682	+	0	NA	Intergenic	AluY|SINE|Alu	246453	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	"family with sequence similarity 49, member A"	protein-coding
chr5.178284019.+	chr5	178284019	178284020	+	0	NA	Intergenic	AluJb|SINE|Alu	-2935	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr21.9827501.+	chr21	9827501	9827502	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	1298	NR_037458	100500815		NR_037458	ENSG00000264063	MIR3687	-	microRNA 3687	miscRNA
chr11.9243385.+	chr11	9243385	9243386	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43488	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr5.137550380.-	chr5	137550380	137550381	-	0	NA	Intergenic	AluY|SINE|Alu	1348	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chrX.153657101.-	chrX	153657101	153657102	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-123	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr3.8721188.+	chr3	8721188	8721189	+	0	NA	Intergenic	Intergenic	-27424	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr12.132372585.-	chr12	132372585	132372586	-	0	NA	Intergenic	AluSx|SINE|Alu	6694	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr19.49186339.-	chr19	49186339	49186340	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10075	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr6.123144174.+	chr6	123144174	123144175	+	0	NA	Intergenic	AluY|SINE|Alu	34203	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr4.169239830.-	chr4	169239830	169239831	-	0	NA	"5' UTR (NM_017631, exon 1 of 38)"	"5' UTR (NM_017631, exon 1 of 38)"	-128	NM_017631	55601	Hs.591710	NM_017631	ENSG00000137628	DDX60	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding
chr16.33294024.-	chr16	33294024	33294025	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4678	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr13.111268301.-	chr13	111268301	111268302	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-370	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr6.111924221.+	chr6	111924221	111924222	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3256	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr5.176482970.-	chr5	176482970	176482971	-	0	NA	"intron (NM_012279, intron 5 of 6)"	AluSx|SINE|Alu	30951	NM_213647	2264	Hs.165950	NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
chr19.42071503.+	chr19	42071503	42071504	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-11028	NM_001098506	90273	Hs.655885	NM_001098506	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	carcinoembryonic antigen-related cell adhesion molecule 21	protein-coding
chr2.101245767.+	chr2	101245767	101245768	+	0	NA	Intergenic	Intergenic	66349	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr9.120507379.+	chr9	120507379	120507380	+	0	NA	Intergenic	CpG	40926	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr1.40953667.+	chr1	40953667	40953668	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10365	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr1.55583164.+	chr1	55583164	55583165	+	0	NA	"intron (NM_015306, intron 38 of 67)"	AluYb8|SINE|Alu	78015	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr5.128197054.+	chr5	128197054	128197055	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104156	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chrX.129244601.-	chrX	129244601	129244602	-	0	NA	promoter-TSS (NM_001421)	promoter-TSS (NM_001421)	-87	NM_001127197	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr19.7463475.+	chr19	7463475	7463476	+	0	NA	"intron (NM_015318, intron 1 of 20)"	AluSg|SINE|Alu	3476	NM_015318	23370	Hs.736818	NM_001130955	ENSG00000104880	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
chr16.443620.-	chr16	443620	443621	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3572	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr19.3644482.-	chr19	3644482	3644483	-	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	17669	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr11.17160907.-	chr11	17160907	17160908	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30447	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr10.135087596.-	chr10	135087596	135087597	-	0	NA	"intron (NM_001164489, intron 3 of 21)"	"intron (NM_001164489, intron 3 of 21)"	-2811	NM_001164490	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr7.63023280.+	chr7	63023280	63023281	+	0	NA	Intergenic	Intergenic	-58188	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr12.127944446.-	chr12	127944446	127944447	-	0	NA	Intergenic	Intergenic	421716	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr2.230579946.+	chr2	230579946	230579947	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-660	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr14.101892588.-	chr14	101892588	101892589	-	0	NA	Intergenic	AluY|SINE|Alu	-129425	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr9.90885115.+	chr9	90885115	90885116	+	0	NA	Intergenic	AluJb|SINE|Alu	-118182	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr4.77348112.-	chr4	77348112	77348113	-	0	NA	Intergenic	AluY|SINE|Alu	8141	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr4.185767506.-	chr4	185767506	185767507	-	0	NA	"non-coding (NR_037867, exon 2 of 2)"	"non-coding (NR_037867, exon 2 of 2)"	-694	NR_037867	731424	Hs.547045	NR_037867		LOC731424	-	uncharacterized LOC731424	miscRNA
chr20.3349448.+	chr20	3349448	3349449	+	0	NA	"intron (NM_001009984, intron 6 of 36)"	AluY|SINE|Alu	38861	NM_001009984	25943	Hs.516853	NM_001009984	ENSG00000088854	C20orf194	-	chromosome 20 open reading frame 194	protein-coding
chr22.20137581.-	chr22	20137581	20137582	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	150	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr1.181058713.+	chr1	181058713	181058714	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1075	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr3.183164439.-	chr3	183164439	183164440	-	0	NA	promoter-TSS (NR_038302)	promoter-TSS (NR_038302)	957	NR_038302	100505687	Hs.551751	NR_038301	ENSG00000240024	LOC100505687	-	uncharacterized LOC100505687	miscRNA
chr21.47838737.+	chr21	47838737	47838738	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40125	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chrM.9905.-	chrM	9905	9906	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.151727631.+	chr6	151727631	151727632	+	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	-14954	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr16.22675553.+	chr16	22675553	22675554	+	0	NA	Intergenic	AluJr|SINE|Alu	-54050	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr6.139853788.-	chr6	139853788	139853789	-	0	NA	Intergenic	AluY|SINE|Alu	58055	NR_033919	645434	Hs.666240	NR_033919		LOC645434	-	uncharacterized LOC645434	miscRNA
chr5.171395332.+	chr5	171395332	171395333	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38545	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr6.25384356.+	chr6	25384356	25384357	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104700	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr4.1723295.+	chr4	1723295	1723296	+	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	78	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr5.31921537.+	chr5	31921537	31921538	+	0	NA	"intron (NM_178140, intron 1 of 23)"	AluJb|SINE|Alu	14728	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	miscRNA
chr13.31735124.+	chr13	31735124	31735125	+	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	993	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr5.1201328.+	chr5	1201328	1201329	+	0	NA	promoter-TSS (NM_001003841)	promoter-TSS (NM_001003841)	-382	NM_001003841	340024	Hs.481478	NM_001003841	ENSG00000174358	SLC6A19	B0AT1|HND	"solute carrier family 6 (neutral amino acid transporter), member 19"	protein-coding
chr1.40953685.-	chr1	40953685	40953686	-	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	-10383	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr17.63480253.-	chr17	63480253	63480254	-	0	NA	Intergenic	SVA_D|Other|Other	-77487	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
chrX.53123452.+	chrX	53123452	53123453	+	0	NA	Intergenic	CpG	11910	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.30810968.-	chr16	30810968	30810969	-	0	NA	Intergenic	AluSx|SINE|Alu	12445	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr7.5570055.+	chr7	5570055	5570056	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	177	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr10.118500982.+	chr10	118500982	118500983	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1103	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr17.57868945.+	chr17	57868945	57868946	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49682	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr22.46522779.+	chr22	46522779	46522780	+	0	NA	Intergenic	Intergenic	13213	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr16.3203789.-	chr16	3203789	3203790	-	0	NA	Intergenic	AluSg|SINE|Alu	-18655	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr13.21872299.-	chr13	21872299	21872300	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-35	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr16.3231761.+	chr16	3231761	3231762	+	0	NA	Intergenic	Intergenic	-22486	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr15.89721761.-	chr15	89721761	89721762	-	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	-43161	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr11.64929032.-	chr11	64929032	64929033	-	0	NA	Intergenic	AluSc5|SINE|Alu	8675	NM_001008778	387778	Hs.450642	NM_001008778	ENSG00000204710	SPDYC	RINGOC|Ringo2	speedy homolog C (Xenopus laevis)	protein-coding
chr9.131639083.+	chr9	131639083	131639084	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5271	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr21.11130077.+	chr21	11130077	11130078	+	0	NA	Intergenic	AluSz6|SINE|Alu	-31140	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr12.112161124.-	chr12	112161124	112161125	-	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	-37267	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr15.100514141.-	chr15	100514141	100514142	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167009	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr17.42082779.+	chr17	42082779	42082780	+	0	NA	promoter-TSS (NM_004160)	promoter-TSS (NM_004160)	747	NM_153006	162417	Hs.8876	NM_153006	ENSG00000161653	NAGS	AGAS|ARGA	N-acetylglutamate synthase	protein-coding
chrM.15925.-	chrM	15925	15926	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr10.42644593.-	chr10	42644593	42644594	-	0	NA	Intergenic	Intergenic	-218900	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr12.95467154.-	chr12	95467154	95467155	-	0	NA	"intron (NM_003297, intron 1 of 13)"	CpG	-250	NM_003297	7181	Hs.707524	NM_001032287	ENSG00000120798	NR2C1	TR2	"nuclear receptor subfamily 2, group C, member 1"	protein-coding
chr16.67682109.-	chr16	67682109	67682110	-	0	NA	"exon (NM_001013838, exon 14 of 38)"	"exon (NM_001013838, exon 14 of 38)"	-3079	NM_001013838	146206	Hs.611432	NM_001013838	ENSG00000159753	RLTPR	CARMIL2|CARMIL2b|LRRC16C	"RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing"	protein-coding
chr21.37627692.+	chr21	37627692	37627693	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64795	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr20.61471582.+	chr20	61471582	61471583	+	0	NA	TTS (NM_006602)	TTS (NM_006602)	-4894	NM_080750	100132911	Hs.126248	NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1|dJ885L7.5	"DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1"	protein-coding
chr1.16970724.-	chr1	16970724	16970725	-	0	NA	Intergenic	Intergenic	1345	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr9.139071847.-	chr9	139071847	139071848	-	0	NA	Intergenic	Intergenic	-23157	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr19.45524629.-	chr19	45524629	45524630	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17669	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr14.51521515.+	chr14	51521515	51521516	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	40907	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr13.35082276.+	chr13	35082276	35082277	+	0	NA	"intron (NR_047036, intron 2 of 2)"	AluY|SINE|Alu	132546	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr7.54614249.+	chr7	54614249	54614250	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4230	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr9.34329556.+	chr9	34329556	34329557	+	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	52	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr22.50711968.-	chr22	50711968	50711969	-	0	NA	Intergenic	LTR13|LTR|ERVK	3189	NM_002751	5600	Hs.57732	XM_003960822	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
chr2.64811863.+	chr2	64811863	64811864	+	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	-22583	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr9.138065616.+	chr9	138065616	138065617	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7839	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr17.9202872.-	chr17	9202872	9202873	-	0	NA	"intron (NM_004853, intron 7 of 7)"	AluY|SINE|Alu	-276403	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
chr7.532154.-	chr7	532154	532155	-	0	NA	Intergenic	Intergenic	-27327	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr10.22126988.-	chr10	22126988	22126989	-	0	NA	"intron (NM_022365, intron 8 of 11)"	SVA_C|Other|Other	-165662	NM_022365	64215	Hs.499000	NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	"DnaJ (Hsp40) homolog, subfamily C, member 1"	protein-coding
chr1.109995490.+	chr1	109995490	109995491	+	0	NA	Intergenic	AluY|SINE|Alu	-13610	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr8.26241053.-	chr8	26241053	26241054	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-530	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr10.7098997.-	chr10	7098997	7098998	-	0	NA	Intergenic	AluSq|SINE|Alu	-277437	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr11.134026103.+	chr11	134026103	134026104	+	0	NA	"intron (NM_015261, intron 32 of 34)"	"intron (NM_015261, intron 32 of 34)"	68323	NM_015261	23310	Hs.438550	NM_015261	ENSG00000151503	NCAPD3	CAP-D3|hCAP-D3|hHCP-6|hcp-6	"non-SMC condensin II complex, subunit D3"	protein-coding
chr18.14856563.-	chr18	14856563	14856564	-	0	NA	Intergenic	SVA_F|Other|Other	-26398	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	miscRNA
chr4.86391841.-	chr4	86391841	86391842	-	0	NA	Intergenic	AluY|SINE|Alu	4443	NM_001025616	83478	Hs.444229	NM_001025616	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
chr14.97183970.+	chr14	97183970	97183971	+	0	NA	Intergenic	AluY|SINE|Alu	-79714	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr18.63211131.-	chr18	63211131	63211132	-	0	NA	Intergenic	AluY|SINE|Alu	206357	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr15.66993598.-	chr15	66993598	66993599	-	0	NA	Intergenic	CpG	1076	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr1.32731825.+	chr1	32731825	32731826	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7887	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr4.190662146.+	chr4	190662146	190662147	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199828	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr4.178729999.+	chr4	178729999	178730000	+	0	NA	"intron (NR_028342, intron 2 of 5)"	AluY|SINE|Alu	80088	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LOC285501	-	uncharacterized LOC285501	miscRNA
chr2.225533524.+	chr2	225533524	225533525	+	0	NA	Intergenic	AluSx|SINE|Alu	-83410	NM_001257197	8452	Hs.372286	NM_001257197	ENSG00000036257	CUL3	CUL-3|PHA2E	cullin 3	protein-coding
chr12.70060052.+	chr12	70060052	70060053	+	0	NA	"intron (NM_032735, intron 9 of 9)"	AluSz|SINE|Alu	23004	NM_152439	144453	Hs.280782	NM_032735	ENSG00000127325	BEST3	VMD2L3	bestrophin 3	protein-coding
chr11.65448704.+	chr11	65448704	65448705	+	0	NA	Intergenic	AluSx|SINE|Alu	-18261	NM_001243985	5970	Hs.502875	NM_001145138	ENSG00000173039	RELA	NFKB3|p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding
chrX.53111643.+	chrX	53111643	53111644	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	101	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.1200568.+	chr7	1200568	1200569	+	0	NA	promoter-TSS (NM_182491)	promoter-TSS (NM_182491)	-713	NM_182491	90637	Hs.648111	NM_182491	ENSG00000178381	ZFAND2A	AIRAP	"zinc finger, AN1-type domain 2A"	protein-coding
chr20.14910687.+	chr20	14910687	14910688	+	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	-526	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr1.54953518.-	chr1	54953518	54953519	-	0	NA	Intergenic	Intergenic	60289	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr16.58288654.+	chr16	58288654	58288655	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4814	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr1.227982934.+	chr1	227982934	227982935	+	0	NA	Intergenic	Intergenic	-20484	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr9.139838342.-	chr9	139838342	139838343	-	0	NA	"intron (NM_018998, intron 2 of 8)"	CpG-27406	-864	NM_018998	54461	Hs.522507	NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
chr11.17905674.-	chr11	17905674	17905675	-	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	-128963	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr16.632128.-	chr16	632128	632129	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7229	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr17.5148718.-	chr17	5148718	5148719	-	0	NA	Intergenic	AluSq|SINE|Alu	10563	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr12.121346475.-	chr12	121346475	121346476	-	0	NA	Intergenic	AluSp|SINE|Alu	4320	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr5.3764256.+	chr5	3764256	3764257	+	0	NA	Intergenic	Intergenic	168088	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr15.90357455.+	chr15	90357455	90357456	+	0	NA	"intron (NM_001150, intron 1 of 20)"	CpG	617	NM_001150	290	Hs.1239	NM_001150	ENSG00000166825	ANPEP	APN|CD13|GP150|LAP1|P150|PEPN	alanyl (membrane) aminopeptidase	protein-coding
chr12.34492668.+	chr12	34492668	34492669	+	0	NA	Intergenic	GSATII|Satellite|centr	317452	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.43905203.-	chr2	43905203	43905204	-	0	NA	"intron (NM_172069, intron 2 of 29)"	SVA_D|Other|Other	1742	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
chr1.110881046.-	chr1	110881046	110881047	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-747	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr7.157129514.+	chr7	157129514	157129515	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-196	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr22.50871758.-	chr22	50871758	50871759	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41706	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr11.43849852.+	chr11	43849852	43849853	+	0	NA	"intron (NM_016142, intron 6 of 10)"	AluYa5|SINE|Alu	-52505	NM_139178	221120	Hs.720708	NM_139178	ENSG00000166199	ALKBH3	ABH3|DEPC-1|DEPC1|PCA1	"alkB, alkylation repair homolog 3 (E. coli)"	protein-coding
chr19.12845499.-	chr19	12845499	12845500	-	0	NA	promoter-TSS (NM_024038)	promoter-TSS (NM_024038)	-30	NM_024038	79002	Hs.515155	NM_024038	ENSG00000123144	C19orf43	fSAP18	chromosome 19 open reading frame 43	protein-coding
chr11.12696646.-	chr11	12696646	12696647	-	0	NA	"intron (NM_021961, intron 1 of 12)"	CpG	-677	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chr1.223900739.-	chr1	223900739	223900740	-	0	NA	"intron (NM_001748, intron 1 of 20)"	CpG	-620	NM_001748	824	Hs.350899	NM_001146068	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	"calpain 2, (m/II) large subunit"	protein-coding
chr14.23233381.+	chr14	23233381	23233382	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2350	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr19.49186346.+	chr19	49186346	49186347	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10082	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr20.31118114.+	chr20	31118114	31118115	+	0	NA	"intron (NM_001256798, intron 1 of 10)"	AluY|SINE|Alu	-46729	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr12.133539238.+	chr12	133539238	133539239	+	0	NA	Intergenic	AluY|SINE|Alu	-6346	NM_001164715	100289635	Hs.29698	NM_001164715	ENSG00000196458	ZNF605	-	zinc finger protein 605	protein-coding
chrX.53123447.-	chrX	53123447	53123448	-	0	NA	Intergenic	CpG	-11905	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr3.46792299.-	chr3	46792299	46792300	-	0	NA	Intergenic	CpG	6054	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr16.85203774.+	chr16	85203774	85203775	+	0	NA	Intergenic	CpG	33018	NR_033984	400548	Hs.592054	NR_033984		LOC400548	-	uncharacterized LOC400548	miscRNA
chr19.11646898.+	chr19	11646898	11646899	+	0	NA	Intergenic	Intergenic	-2681	NM_001299	1264	Hs.465929	NM_001299	ENSG00000130176	CNN1	SMCC|Sm-Calp	"calponin 1, basic, smooth muscle"	protein-coding
chr2.10733464.-	chr2	10733464	10733465	-	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	-96649	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr22.37738631.+	chr22	37738631	37738632	+	0	NA	Intergenic	Intergenic	60136	NM_013385	27128	Hs.170944	NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4	cytohesin 4	protein-coding
chr19.11043314.+	chr19	11043314	11043315	+	0	NA	Intergenic	AluSg4|SINE|Alu	3890	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr2.172379807.+	chr2	172379807	172379808	+	0	NA	"intron (NM_001127383, intron 1 of 2)"	CpG	941	NM_001127383	79901	Hs.221941	NM_001127383	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
chrX.15026779.+	chrX	15026779	15026780	+	0	NA	Intergenic	AluY|SINE|Alu	123366	NM_001177475	158747	Hs.190043	NM_001177475		MOSPD2	-	motile sperm domain containing 2	protein-coding
chr10.88698876.+	chr10	88698876	88698877	+	0	NA	"intron (NM_024756, intron 6 of 6)"	AluSp|SINE|Alu	18549	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chr22.17719105.+	chr22	17719105	17719106	+	0	NA	Intergenic	AluSg|SINE|Alu	-28326	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr4.148075843.-	chr4	148075843	148075844	-	0	NA	Intergenic	AluY|SINE|Alu	208809	NM_031956	83894	Hs.378893	NM_031956	ENSG00000137473	TTC29	NYD-SP14|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
chr19.13321453.+	chr19	13321453	13321454	+	0	NA	"exon (NM_001127221, exon 44 of 47)"	"exon (NM_001127221, exon 44 of 47)"	60171	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr5.132165818.+	chr5	132165818	132165819	+	0	NA	"intron (NM_001172700, intron 1 of 9)"	CpG	772	NM_001172700	134549	Hs.519574	NM_001172700	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
chr16.4537744.-	chr16	4537744	4537745	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8115	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr5.25535490.-	chr5	25535490	25535491	-	0	NA	Intergenic	AluY|SINE|Alu	694798	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr7.1542260.-	chr7	1542260	1542261	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1758	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr6.70692596.+	chr6	70692596	70692597	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116148	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr19.6516907.-	chr19	6516907	6516908	-	0	NA	Intergenic	CpG	14103	NM_003811	8744	Hs.1524	NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L	"tumor necrosis factor (ligand) superfamily, member 9"	protein-coding
chr1.21671588.-	chr1	21671588	21671589	-	0	NA	"intron (NM_001113348, intron 1 of 18)"	CpG	-446	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr7.2943517.-	chr7	2943517	2943518	-	0	NA	Intergenic	Intergenic	59558	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr9.135038309.-	chr9	135038309	135038310	-	0	NA	"intron (NM_032536, intron 1 of 7)"	CpG	-975	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr16.3203816.-	chr16	3203816	3203817	-	0	NA	Intergenic	AluSg|SINE|Alu	-18682	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr11.60619624.+	chr11	60619624	60619625	+	0	NA	"3' UTR (NM_004778, exon 2 of 2)"	"3' UTR (NM_004778, exon 2 of 2)"	3820	NM_004778	11251	Hs.299567	NM_004778	ENSG00000183134	PTGDR2	CD294|CRTH2|DL1R|DP2|GPR44	prostaglandin D2 receptor 2	protein-coding
chr22.38336416.+	chr22	38336416	38336417	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13238	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr17.72262260.+	chr17	72262260	72262261	+	0	NA	Intergenic	AluJb|SINE|Alu	-8126	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr11.18743354.-	chr11	18743354	18743355	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4423	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chrX.153657100.+	chrX	153657100	153657101	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	122	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr8.26241049.-	chr8	26241049	26241050	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-526	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr3.126260599.-	chr3	126260599	126260600	-	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	-17159	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr10.134216482.-	chr10	134216482	134216483	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5780	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr5.34008253.-	chr5	34008253	34008254	-	0	NA	promoter-TSS (NM_203382)	promoter-TSS (NM_203382)	33	NM_203382	23600	Hs.508343	NM_001167595	ENSG00000242110	AMACR	AMACRD|CBAS4|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
chr12.53652055.-	chr12	53652055	53652056	-	0	NA	Intergenic	AluY|SINE|Alu	-6179	NM_032889	84975	Hs.654660	NM_001170790	ENSG00000182544	MFSD5	-	major facilitator superfamily domain containing 5	protein-coding
chr17.79139719.+	chr17	79139719	79139720	+	0	NA	"intron (NR_027255, intron 1 of 5)"	CpG	153	NM_001080395	9625	Hs.514575	NM_001080395	ENSG00000181409	AATK	AATYK|AATYK1|LMR1|LMTK1|p35BP	apoptosis-associated tyrosine kinase	protein-coding
chr4.1311085.-	chr4	1311085	1311086	-	0	NA	"intron (NM_005882, intron 3 of 7)"	C-rich|Low_complexity|Low_complexity	-27413	NM_001017405	10296	Hs.139896	NM_001017405	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|PIG5	macrophage erythroblast attacher	protein-coding
chr1.50571862.-	chr1	50571862	50571863	-	0	NA	promoter-TSS (NM_001144775)	promoter-TSS (NM_001144775)	102	NM_001144775	1996	Hs.213050	NM_001144774	ENSG00000162374	ELAVL4	HUD|PNEM	"ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4"	protein-coding
chr20.57363916.-	chr20	57363916	57363917	-	0	NA	Intergenic	Intergenic	-28833	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr8.82599905.+	chr8	82599905	82599906	+	0	NA	Intergenic	AluY|SINE|Alu	-1316	NM_001144879	3612	Hs.656694	NM_001144878		IMPA1	IMP|IMPA	inositol(myo)-1(or 4)-monophosphatase 1	protein-coding
chr3.47744701.+	chr3	47744701	47744702	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78704	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr19.46185846.+	chr19	46185846	46185847	+	0	NA	TTS (NM_000164)	TTS (NM_000164)	-7580	NR_037512	100500845		NR_037512		MIR642B	-	microRNA 642b	miscRNA
chr5.1824157.-	chr5	1824157	1824158	-	0	NA	Intergenic	AluSz6|SINE|Alu	-22661	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr11.45248234.-	chr11	45248234	45248235	-	0	NA	"exon (NM_001256695, exon 8 of 8)"	"exon (NM_001256695, exon 8 of 8)"	-59650	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
chr1.32679392.-	chr1	32679392	32679393	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4697	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr21.46257648.+	chr21	46257648	46257649	+	0	NA	Intergenic	Intergenic	-19604	NM_006936	6612	Hs.474005	NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae)	protein-coding
chr16.70148614.-	chr16	70148614	70148615	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1085	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr9.1433371.-	chr9	1433371	1433372	-	0	NA	Intergenic	AluSc|SINE|Alu	-382751	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr3.170096469.-	chr3	170096469	170096470	-	0	NA	"intron (NM_001145097, intron 1 of 5)"	AluSx1|SINE|Alu	-19058	NM_001248008	6498	Hs.581632	NM_001145097	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like oncogene	protein-coding
chr19.17585847.-	chr19	17585847	17585848	-	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	-4547	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr3.160673529.-	chr3	160673529	160673530	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149154	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr17.5148715.-	chr17	5148715	5148716	-	0	NA	Intergenic	AluSq|SINE|Alu	10560	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr17.7166081.-	chr17	7166081	7166082	-	0	NA	"5' UTR (NM_001307, exon 1 of 4)"	"5' UTR (NM_001307, exon 1 of 4)"	-183	NM_001307	1366	Hs.513915	NM_001185022	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
chr6.168395071.-	chr6	168395071	168395072	-	0	NA	Intergenic	AluSx|SINE|Alu	17452	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr5.176579126.+	chr5	176579126	176579127	+	0	NA	"intron (NM_172349, intron 3 of 23)"	AluY|SINE|Alu	18293	NM_022455	64324	Hs.106861	NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
chr1.147010024.-	chr1	147010024	147010025	-	0	NA	Intergenic	AluY|SINE|Alu	3158	NM_004326	607	Hs.415209	NM_004326	ENSG00000116128	BCL9	LGS	B-cell CLL/lymphoma 9	protein-coding
chr19.14589194.-	chr19	14589194	14589195	-	0	NA	"3' UTR (NM_202468, exon 8 of 8)"	"3' UTR (NM_202468, exon 8 of 8)"	3020	NM_000955	5731	Hs.159360	NM_000955	ENSG00000160951	PTGER1	EP1	"prostaglandin E receptor 1 (subtype EP1), 42kDa"	protein-coding
chr15.41613090.+	chr15	41613090	41613091	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11729	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr2.175183584.-	chr2	175183584	175183585	-	0	NA	Intergenic	AluSq2|SINE|Alu	7171	NR_038897	285084	Hs.275398	NR_038897	ENSG00000231453	LOC285084	-	uncharacterized LOC285084	miscRNA
chr2.109409676.-	chr2	109409676	109409677	-	0	NA	"intron (NM_144978, intron 4 of 14)"	AluY|SINE|Alu	-6457	NM_144978	165055	Hs.731709	NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
chr5.156492139.-	chr5	156492139	156492140	-	0	NA	Intergenic	AluY|SINE|Alu	6169	NM_001173393	26762	Hs.129711	NM_001099414	ENSG00000113249	HAVCR1	HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
chr17.12456656.+	chr17	12456656	12456657	+	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	3371	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr1.236252174.-	chr1	236252174	236252175	-	0	NA	Intergenic	AluY|SINE|Alu	23693	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr3.31574027.-	chr3	31574027	31574028	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	464	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr17.22012652.+	chr17	22012652	22012653	+	0	NA	Intergenic	Intergenic	-9785	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr19.22949512.+	chr19	22949512	22949513	+	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	17461	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr14.102577006.-	chr14	102577006	102577007	-	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	23494	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr12.77339553.-	chr12	77339553	77339554	-	0	NA	Intergenic	AluY|SINE|Alu	66754	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr9.77401570.+	chr9	77401570	77401571	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100693	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr1.10727885.+	chr1	10727885	10727886	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128848	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr19.55785699.+	chr19	55785699	55785700	+	0	NA	"intron (NM_001130106, intron 5 of 8)"	"intron (NM_001130106, intron 5 of 8)"	6052	NM_012267	23640	Hs.53066	NM_001130106	ENSG00000133265	HSPBP1	FES1	"HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1"	protein-coding
chr2.88284181.-	chr2	88284181	88284182	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	AluY|SINE|Alu	-1128	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
chr4.185174273.+	chr4	185174273	185174274	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35159	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr17.77198157.-	chr17	77198157	77198158	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-127138	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr5.138944069.+	chr5	138944069	138944070	+	0	NA	"intron (NM_181838, intron 2 of 7)"	AluSx1|SINE|Alu	3318	NM_181838	7322	Hs.108332	NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
chr19.3766731.-	chr19	3766731	3766732	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4066	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr11.916039.+	chr11	916039	916040	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-981	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr19.22949504.-	chr19	22949504	22949505	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	-17469	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr13.62067794.+	chr13	62067794	62067795	+	0	NA	Intergenic	AluY|SINE|Alu	-78139	NM_022843	64881	Hs.391781	NM_022843	ENSG00000197991	PCDH20	PCDH13	protocadherin 20	protein-coding
chr7.101056656.+	chr7	101056656	101056657	+	0	NA	"intron (NM_133457, intron 1 of 12)"	AluSq2|SINE|Alu	50534	NM_133457	136227	Hs.654854	NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	"collagen, type XXVI, alpha 1"	protein-coding
chr11.915976.-	chr11	915976	915977	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	918	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr9.136900808.+	chr9	136900808	136900809	+	0	NA	"intron (NM_007371, intron 10 of 11)"	"intron (NM_007371, intron 10 of 11)"	10247	NR_015427	266655	Hs.654869	NR_002800		LINC00094	LP2477|NCRNA00094|bA374P20.3	long intergenic non-protein coding RNA 94	miscRNA
chr14.105473697.+	chr14	105473697	105473698	+	0	NA	Intergenic	Intergenic	13728	NM_145701	55038	Hs.34045	NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
chr16.86737650.+	chr16	86737650	86737651	+	0	NA	Intergenic	Intergenic	125535	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr5.1137780.-	chr5	1137780	1137781	-	0	NA	Intergenic	Intergenic	25608	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr15.90543314.+	chr15	90543314	90543315	+	0	NA	Intergenic	L2b|LINE|L2	-1438	NM_198526	374655	Hs.459311	NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding
chr3.95669674.+	chr3	95669674	95669675	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267637	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr12.106697198.+	chr12	106697198	106697199	+	0	NA	"intron (NM_152772, intron 1 of 9)"	CpG	617	NM_152772	255394	Hs.696047	NM_152772	ENSG00000166046	TCP11L2	-	"t-complex 11, testis-specific-like 2"	protein-coding
chr4.134726967.-	chr4	134726967	134726968	-	0	NA	Intergenic	AluY|SINE|Alu	-395936	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	"poly(A) binding protein, cytoplasmic 4-like"	protein-coding
chr18.29434810.+	chr18	29434810	29434811	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88281	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr9.138663319.-	chr9	138663319	138663320	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69288	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr22.49290010.-	chr22	49290010	49290011	-	0	NA	"intron (NR_038944, intron 4 of 6)"	"intron (NR_038944, intron 4 of 6)"	-27428	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr1.182234400.+	chr1	182234400	182234401	+	0	NA	Intergenic	AluJb|SINE|Alu	126139	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr18.7330464.-	chr18	7330464	7330465	-	0	NA	Intergenic	Intergenic	-99327	NM_001105581	339291	Hs.647588	NM_001105581	ENSG00000206422	LRRC30	-	leucine rich repeat containing 30	protein-coding
chr19.39887059.-	chr19	39887059	39887060	-	0	NA	"intron (NM_017592, intron 3 of 3)"	AluSg|SINE|Alu	-5096	NM_017592	55588	Hs.611541	NM_017592	ENSG00000063322	MED29	IXL	mediator complex subunit 29	protein-coding
chr2.9278905.-	chr2	9278905	9278906	-	0	NA	Intergenic	Intergenic	67989	NM_001135191	8853	Hs.555902	NM_001135191	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	"ArfGAP with SH3 domain, ankyrin repeat and PH domain 2"	protein-coding
chr11.126081350.+	chr11	126081350	126081351	+	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	237	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr21.45566100.+	chr21	45566100	45566101	+	0	NA	TTS (NM_198155)	TTS (NM_198155)	12606	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr6.167607688.-	chr6	167607688	167607689	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23607	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr16.90085562.-	chr16	90085562	90085563	-	0	NA	"intron (NM_001042610, intron 1 of 3)"	CpG	-375	NM_001042610	79007	Hs.301394	NM_001042610	ENSG00000003249	DBNDD1	-	dysbindin (dystrobrevin binding protein 1) domain containing 1	protein-coding
chr17.5302504.+	chr17	5302504	5302505	+	0	NA	"intron (NM_002532, intron 8 of 16)"	AluY|SINE|Alu	-20457	NM_001160266	84268	Hs.555866	NM_001160267	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
chr11.63682043.+	chr11	63682043	63682044	+	0	NA	"intron (NM_173587, intron 5 of 11)"	"intron (NM_173587, intron 5 of 11)"	2273	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
chr3.126260601.+	chr3	126260601	126260602	+	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	17157	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr16.1176145.-	chr16	1176145	1176146	-	0	NA	Intergenic	Intergenic	27096	NM_021098	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr11.67351054.-	chr11	67351054	67351055	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	12	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr8.142397032.+	chr8	142397032	142397033	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-19667	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr15.101791481.+	chr15	101791481	101791482	+	0	NA	"exon (NM_014918, exon 1 of 3)"	"exon (NM_014918, exon 1 of 3)"	656	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
chrX.19862949.+	chrX	19862949	19862950	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42795	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr9.100747335.+	chr9	100747335	100747336	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1846	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr8.42037563.+	chr8	42037563	42037564	+	0	NA	"exon (NM_000930, exon 12 of 14)"	"exon (NM_000930, exon 12 of 14)"	27099	NM_006803	10947	Hs.654529	NM_001134296	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	"adaptor-related protein complex 3, mu 2 subunit"	protein-coding
chr6.22057483.+	chr6	22057483	22057484	+	0	NA	"intron (NR_015410, intron 8 of 11)"	AluYc|SINE|Alu	89939	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	LOC729177	-	uncharacterized LOC729177	miscRNA
chr19.35703787.-	chr19	35703787	35703788	-	0	NA	Intergenic	AluY|SINE|Alu	-15841	NM_152481	148109	Hs.128069	NM_152481	ENSG00000177558	FAM187B	TMEM162	"family with sequence similarity 187, member B"	protein-coding
chr10.133869240.+	chr10	133869240	133869241	+	0	NA	Intergenic	Intergenic	-49073	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr16.4835235.-	chr16	4835235	4835236	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3163	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr7.100963633.+	chr7	100963633	100963634	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1460	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr22.45579984.+	chr22	45579984	45579985	+	0	NA	"intron (NM_007172, intron 7 of 7)"	"intron (NM_007172, intron 7 of 7)"	16916	NR_031651	100302149		NR_031651		MIR1249	MIRN1249|hsa-mir-1249	microRNA 1249	miscRNA
chr7.1474639.-	chr7	1474639	1474640	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24470	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr5.29531089.-	chr5	29531089	29531090	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604112	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr9.127626623.+	chr9	127626623	127626624	+	0	NA	Intergenic	AluSx|SINE|Alu	-2383	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr13.51604407.-	chr13	51604407	51604408	-	0	NA	"intron (NR_003923, intron 4 of 16)"	AluSc8|SINE|Alu	-35886	NR_003923	2974	Hs.411573	NM_004129	ENSG00000123201	GUCY1B2	GC-SB2	"guanylate cyclase 1, soluble, beta 2 (pseudogene)"	pseudo
chr16.85368912.+	chr16	85368912	85368913	+	0	NA	Intergenic	Intergenic	-28981	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr1.183670813.-	chr1	183670813	183670814	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48365	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr3.36421969.+	chr3	36421969	36421970	+	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	-128	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr4.41386478.+	chr4	41386478	41386479	+	0	NA	"intron (NM_001112717, intron 1 of 25)"	AluY|SINE|Alu	23674	NM_001112718	22998	Hs.335163	NM_001112717	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
chr5.1598282.+	chr5	1598282	1598283	+	0	NA	"non-coding (NR_003713, exon 4 of 4)"	"non-coding (NR_003713, exon 4 of 4)"	-3636	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3"	pseudo
chr7.5570088.+	chr7	5570088	5570089	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	144	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr8.12476334.-	chr8	12476334	12476335	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46786	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr22.46394272.-	chr22	46394272	46394273	-	0	NA	Intergenic	Intergenic	8224	NR_027240	730668	Hs.640071	NR_027240		LOC730668	-	dynein heavy chain -like pseudogene	pseudo
chr7.5703139.+	chr7	5703139	5703140	+	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	16953	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr14.53476778.+	chr14	53476778	53476779	+	0	NA	Intergenic	AluSx|SINE|Alu	-58963	NM_006832	10979	Hs.509343	NM_001134999	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
chr8.144546592.+	chr8	144546592	144546593	+	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	-33990	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr10.122148836.+	chr10	122148836	122148837	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67630	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr18.7129638.-	chr18	7129638	7129639	-	0	NA	Intergenic	AluSx|SINE|Alu	11825	NM_005559	284217	Hs.270364	NM_005559	ENSG00000101680	LAMA1	LAMA|S-LAM-alpha	"laminin, alpha 1"	protein-coding
chr12.112407447.-	chr12	112407447	112407448	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43576	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr8.31497528.-	chr8	31497528	31497529	-	0	NA	"exon (NM_013962, exon 1 of 5)"	"exon (NM_013962, exon 1 of 5)"	-260	NM_013962	3084	Hs.668810	NM_001159995	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|NDF|SMDF	neuregulin 1	protein-coding
chr2.234157308.-	chr2	234157308	234157309	-	0	NA	Intergenic	AluSx1|SINE|Alu	2909	NM_001190266	55054	Hs.529322	NM_001190266	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
chrX.118871974.+	chrX	118871974	118871975	+	0	NA	Intergenic	AluYc|SINE|Alu	-20602	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr17.26336762.+	chr17	26336762	26336763	+	0	NA	Intergenic	AluSz|SINE|Alu	-32926	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chrX.21676548.+	chrX	21676548	21676549	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-100	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr12.121341813.+	chr12	121341813	121341814	+	0	NA	"5' UTR (NM_139015, exon 1 of 11)"	"5' UTR (NM_139015, exon 1 of 11)"	342	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr9.34116714.+	chr9	34116714	34116715	+	0	NA	"intron (NM_015397, intron 2 of 8)"	AluSx1|SINE|Alu	10057	NM_015397	25853	Hs.741270	NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
chr2.43254221.+	chr2	43254221	43254222	+	0	NA	Intergenic	Intergenic	199524	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr6.126111964.+	chr6	126111964	126111965	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	55	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr1.97228912.+	chr1	97228912	97228913	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41737	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr8.98787951.-	chr8	98787951	98787952	-	0	NA	"5' UTR (NM_018407, exon 1 of 7)"	"5' UTR (NM_018407, exon 1 of 7)"	-142	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr10.12344479.+	chr10	12344479	12344480	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47104	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr7.2943512.+	chr7	2943512	2943513	+	0	NA	Intergenic	Intergenic	-59553	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr5.176292904.-	chr5	176292904	176292905	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33429	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr20.36619892.-	chr20	36619892	36619893	-	0	NA	"intron (NM_014657, intron 8 of 8)"	"intron (NM_014657, intron 8 of 8)"	-41941	NM_014657	9675	Hs.655481	NM_014657	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
chr16.31449014.+	chr16	31449014	31449015	+	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	5334	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chrX.53808335.-	chrX	53808335	53808336	-	0	NA	Intergenic	AluYb8|SINE|Alu	94638	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr11.107799900.+	chr11	107799900	107799901	+	0	NA	"intron (NM_017516, intron 1 of 1)"	CpG	623	NM_017516	54734	Hs.354906	NM_017516	ENSG00000179331	RAB39A	RAB39	"RAB39A, member RAS oncogene family"	protein-coding
chr14.99946822.+	chr14	99946822	99946823	+	0	NA	promoter-TSS (NM_001099402)	promoter-TSS (NM_001099402)	404	NM_032233	84193	Hs.510407	NM_032233	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding
chr10.59080652.-	chr10	59080652	59080653	-	0	NA	Intergenic	Intergenic	16333	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr2.71562044.-	chr2	71562044	71562045	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3159	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr21.47403562.+	chr21	47403562	47403563	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1899	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr18.67270910.-	chr18	67270910	67270911	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202626	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chrX.20694426.-	chrX	20694426	20694427	-	0	NA	Intergenic	AluY|SINE|Alu	409676	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr10.75672411.+	chr10	75672411	75672412	+	0	NA	"intron (NM_001145031, intron 3 of 9)"	AluSx1|SINE|Alu	1549	NM_002658	5328	Hs.77274	NM_001145031	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	"plasminogen activator, urokinase"	protein-coding
chr20.61885864.-	chr20	61885864	61885865	-	0	NA	promoter-TSS (NM_152864)	promoter-TSS (NM_152864)	-28	NM_152864	128414	Hs.46627	NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	Na+/K+ transporting ATPase interacting 4	protein-coding
chr14.90420917.-	chr14	90420917	90420918	-	0	NA	"intron (NM_145231, intron 1 of 5)"	CpG	-172	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr1.212873186.-	chr1	212873186	212873187	-	0	NA	"5' UTR (NM_018664, exon 1 of 3)"	"5' UTR (NM_018664, exon 1 of 3)"	-141	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr3.195498036.-	chr3	195498036	195498037	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40808	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr5.86907876.+	chr5	86907876	86907877	+	0	NA	Intergenic	AluY|SINE|Alu	-199026	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr8.146043922.-	chr8	146043922	146043923	-	0	NA	Intergenic	AluY|SINE|Alu	8981	NM_003416	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
chr10.135192250.+	chr10	135192250	135192251	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-491	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr22.18131959.+	chr22	18131959	18131960	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6469	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr1.200904646.+	chr1	200904646	200904647	+	0	NA	Intergenic	AluSx|SINE|Alu	40697	NM_001142569	55765	Hs.518997	NM_001142569	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
chr20.32031780.-	chr20	32031780	32031781	-	0	NA	promoter-TSS (NM_003098)	promoter-TSS (NM_003098)	82	NM_003098	6640	Hs.31121	NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	"syntrophin, alpha 1"	protein-coding
chr14.102109514.-	chr14	102109514	102109515	-	0	NA	Intergenic	AluY|SINE|Alu	-81826	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr2.204121196.+	chr2	204121196	204121197	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18032	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr22.24621461.+	chr22	24621461	24621462	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19649	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr12.63016919.+	chr12	63016919	63016920	+	0	NA	Intergenic	AluY|SINE|Alu	19453	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	miscRNA
chr8.1321559.+	chr8	1321559	1321560	+	0	NA	Intergenic	CpG	-70732	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr16.58016743.-	chr16	58016743	58016744	-	0	NA	"intron (NM_199046, intron 2 of 7)"	AluSz|SINE|Alu	-6404	NM_199456	374739	Hs.132976	NM_199046		TEPP	-	"testis, prostate and placenta expressed"	protein-coding
chr2.120775608.+	chr2	120775608	120775609	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4823	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr1.228733810.-	chr1	228733810	228733811	-	0	NA	Intergenic	HSAT4|Satellite|centr	46584	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr10.135031531.+	chr10	135031531	135031532	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12247	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr7.56143796.+	chr7	56143796	56143797	+	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	11879	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr19.7587589.-	chr19	7587589	7587590	-	0	NA	promoter-TSS (NM_020533)	promoter-TSS (NM_020533)	-93	NM_020533	57192	Hs.631858	NM_020533	ENSG00000090674	MCOLN1	MG-2|ML4|MLIV|MST080|TRP-ML1|TRPM-L1|TRPML1	mucolipin 1	protein-coding
chr17.37768958.+	chr17	37768958	37768959	+	0	NA	Intergenic	Intergenic	-4783	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr22.44845322.+	chr22	44845322	44845323	+	0	NA	Intergenic	Intergenic	48683	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr6.31211961.-	chr6	31211961	31211962	-	0	NA	Intergenic	SVA_F|Other|Other	-27952	NM_001243042	3107	Hs.743218	NM_001243042	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLC-C|PSORS1	"major histocompatibility complex, class I, C"	protein-coding
chr2.192542797.+	chr2	192542797	192542798	+	0	NA	promoter-TSS (NM_001254736)	promoter-TSS (NM_001254736)	-1	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr16.18995515.-	chr16	18995515	18995516	-	0	NA	promoter-TSS (NM_001160364)	promoter-TSS (NM_001160364)	94	NM_001160364	79905	Hs.531661	NM_001160364	ENSG00000170537	TMC7	-	transmembrane channel-like 7	protein-coding
chr10.134034472.-	chr10	134034472	134034473	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34058	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr1.207669636.-	chr1	207669636	207669637	-	0	NA	"exon (NM_000573, exon 1 of 39)"	"exon (NM_000573, exon 1 of 39)"	-163	NM_000573	1378	Hs.334019	NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement component (3b/4b) receptor 1 (Knops blood group)	protein-coding
chr17.65843618.+	chr17	65843618	65843619	+	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	21838	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr2.20424067.+	chr2	20424067	20424068	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	860	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr7.99630232.+	chr7	99630232	99630233	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17013	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr19.23866788.+	chr19	23866788	23866789	+	0	NA	"intron (NM_138330, intron 1 of 3)"	AluY|SINE|Alu	3229	NM_138330	171392	Hs.264345	NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
chr1.85514328.-	chr1	85514328	85514329	-	0	NA	promoter-TSS (NM_018298)	promoter-TSS (NM_018298)	105	NM_018298	55283	Hs.535239	NM_001253693	ENSG00000055732	MCOLN3	TRP-ML3|TRPML3	mucolipin 3	protein-coding
chr5.154071087.+	chr5	154071087	154071088	+	0	NA	Intergenic	Intergenic	-21375	NM_015315	23367	Hs.292078	NM_033551	ENSG00000155506	LARP1	LARP	"La ribonucleoprotein domain family, member 1"	protein-coding
chr16.755838.-	chr16	755838	755839	-	0	NA	promoter-TSS (NM_153350)	promoter-TSS (NM_153350)	13	NM_153350	146330	Hs.513244	NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine-rich repeat protein 16	protein-coding
chrX.137770375.-	chrX	137770375	137770376	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20421	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr22.24621477.+	chr22	24621477	24621478	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19633	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr2.71357860.+	chr2	71357860	71357861	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	416	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr2.159693839.+	chr2	159693839	159693840	+	0	NA	Intergenic	AluSp|SINE|Alu	42010	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr7.73781137.+	chr7	73781137	73781138	+	0	NA	"intron (NM_032421, intron 8 of 15)"	AluSx1|SINE|Alu	77332	NM_032421	7461	Hs.647018	NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-GLY domain containing linker protein 2	protein-coding
chr16.1332171.-	chr16	1332171	1332172	-	0	NA	Intergenic	AluSx|SINE|Alu	-25898	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr7.33164271.-	chr7	33164271	33164272	-	0	NA	Intergenic	AluYf5|SINE|Alu	4881	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr15.91370870.-	chr15	91370870	91370871	-	0	NA	Intergenic	AluSz|SINE|Alu	41015	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr19.18778486.+	chr19	18778486	18778487	+	0	NA	"exon (NM_018316, exon 3 of 3)"	"exon (NM_018316, exon 3 of 3)"	-15939	NM_015321	23373	Hs.371096	NM_025021	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
chr16.86337853.-	chr16	86337853	86337854	-	0	NA	Intergenic	CpG	-17816	NR_038438	146513	Hs.434338	NR_038438	ENSG00000268532	LOC146513	-	uncharacterized LOC146513	miscRNA
chr22.20860477.+	chr22	20860477	20860478	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1409	NM_001003891	51586	Hs.517421	NM_001003891	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
chrX.142432468.-	chrX	142432468	142432469	-	0	NA	Intergenic	AluSx1|SINE|Alu	-172839	NM_001009609	139067	Hs.447320	NM_001009609	ENSG00000189252	SPANXN3	CT11.8|SPANX-N3	"SPANX family, member N3"	protein-coding
chr10.81319140.+	chr10	81319140	81319141	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	1023	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr17.43324895.+	chr17	43324895	43324896	+	0	NA	promoter-TSS (NR_024434)	promoter-TSS (NR_024434)	-408	NR_024434	100133991	Hs.668927	NR_024434	ENSG00000267278	MAP3K14-AS1	-	MAP3K14 antisense RNA 1	miscRNA
chrX.40029673.+	chrX	40029673	40029674	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	6909	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr12.8777866.-	chr12	8777866	8777867	-	0	NA	Intergenic	Intergenic	12424	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr2.38191070.+	chr2	38191070	38191071	+	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	13474	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr12.2037150.-	chr12	2037150	2037151	-	0	NA	Intergenic	Intergenic	-8592	NR_036546	100271702	Hs.737031	NR_036546	ENSG00000235049	LOC100271702	-	uncharacterized LOC100271702	miscRNA
chr15.30261244.-	chr15	30261244	30261245	-	0	NA	Intergenic	CpG	134691	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr7.76022436.-	chr7	76022436	76022437	-	0	NA	"intron (NM_080744, intron 9 of 10)"	CpG	4405	NM_007155	7784	Hs.656137	NM_001110354	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3 (sperm receptor)	protein-coding
chr6.88117995.-	chr6	88117995	88117996	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-305	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr12.8778538.+	chr12	8778538	8778539	+	0	NA	Intergenic	SVA_E|Other|Other	-13096	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr18.70912357.+	chr18	70912357	70912358	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19376	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr12.118663783.+	chr12	118663783	118663784	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89913	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr16.22675568.-	chr16	22675568	22675569	-	0	NA	Intergenic	AluJr|SINE|Alu	54035	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr5.180696169.+	chr5	180696169	180696170	+	0	NA	Intergenic	AluY|SINE|Alu	-8050	NM_032765	84851	Hs.458412	NM_032765	ENSG00000183718	TRIM52	RNF102	tripartite motif containing 52	protein-coding
chr4.118425586.+	chr4	118425586	118425587	+	0	NA	Intergenic	AluY|SINE|Alu	-418850	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr8.126398082.+	chr8	126398082	126398083	+	0	NA	Intergenic	Intergenic	-44481	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr8.54998374.-	chr8	54998374	54998375	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16203	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr16.77246814.-	chr16	77246814	77246815	-	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	-13465	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr10.17622247.-	chr10	17622247	17622248	-	0	NA	Intergenic	AluY|SINE|Alu	-37126	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr5.179119103.+	chr5	179119103	179119104	+	0	NA	Intergenic	AluSz|SINE|Alu	-6827	NM_001024649	821	Hs.567968	NM_001024649	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
chr2.71561975.+	chr2	71561975	71561976	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3090	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr20.48080616.+	chr20	48080616	48080617	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18565	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr3.22843174.-	chr3	22843174	22843175	-	0	NA	Intergenic	L1PA2|LINE|L1	401610	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr16.85267964.-	chr16	85267964	85267965	-	0	NA	Intergenic	MIR|SINE|MIR	48600	NR_038859	197196	Hs.679002	NR_038859	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	miscRNA
chr11.342866.-	chr11	342866	342867	-	0	NA	Intergenic	AluSz|SINE|Alu	21952	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr22.20137590.-	chr22	20137590	20137591	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	159	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr2.90482984.-	chr2	90482984	90482985	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1364991	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr22.45585885.-	chr22	45585885	45585886	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-11015	NR_031651	100302149		NR_031651		MIR1249	MIRN1249|hsa-mir-1249	microRNA 1249	miscRNA
chr9.20684557.+	chr9	20684557	20684558	+	0	NA	"intron (NM_017794, intron 2 of 45)"	CpG	26248	NM_017794	54914	Hs.136247	NM_017794	ENSG00000188352	FOCAD	KIAA1797	focadhesin	protein-coding
chr19.3551997.-	chr19	3551997	3551998	-	0	NA	"intron (NM_021731, intron 1 of 10)"	L2b|LINE|L2	-5574	NM_174983	126321	Hs.656901	NM_001042680	ENSG00000161091	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
chr3.46792416.-	chr3	46792416	46792417	-	0	NA	Intergenic	CpG	6171	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr2.71357874.+	chr2	71357874	71357875	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	430	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr5.128196994.+	chr5	128196994	128196995	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104216	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr7.21370275.+	chr7	21370275	21370276	+	0	NA	Intergenic	MER52D|LTR|ERV1	-97414	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr11.133763773.+	chr11	133763773	133763774	+	0	NA	Intergenic	AluY|SINE|Alu	4703	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr22.46326776.+	chr22	46326776	46326777	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46232	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr10.118500987.+	chr10	118500987	118500988	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1098	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr12.43752564.+	chr12	43752564	43752565	+	0	NA	"intron (NM_025003, intron 37 of 38)"	AluYg6|SINE|Alu	193160	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr12.53373523.+	chr12	53373523	53373524	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26539	NM_001417	1975	Hs.702041	NM_018507	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
chrX.18373047.+	chrX	18373047	18373048	+	0	NA	promoter-TSS (NM_006089)	promoter-TSS (NM_006089)	-203	NR_033717	10389	Hs.495774	NM_006089	ENSG00000102098	SCML2	-	sex comb on midleg-like 2 (Drosophila)	protein-coding
chr4.4041389.-	chr4	4041389	4041390	-	0	NA	Intergenic	AluYb9|SINE|Alu	84241	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr5.1770162.-	chr5	1770162	1770163	-	0	NA	Intergenic	L1MB5|LINE|L1	-29794	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr2.905796.-	chr2	905796	905797	-	0	NA	Intergenic	Intergenic	40758	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr20.45991185.-	chr20	45991185	45991186	-	0	NA	Intergenic	AluSz|SINE|Alu	5711	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr5.28928028.-	chr5	28928028	28928029	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1051	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr14.55349986.-	chr14	55349986	55349987	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5075	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr3.4664381.+	chr3	4664381	4664382	+	0	NA	"intron (NM_002222, intron 4 of 57)"	AluSc|SINE|Alu	128893	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	miscRNA
chr9.140715924.-	chr9	140715924	140715925	-	0	NA	"intron (NM_024757, intron 25 of 26)"	AluJr|SINE|Alu	16947	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	miscRNA
chr1.246995897.-	chr1	246995897	246995898	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42978	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chrX.88129158.+	chrX	88129158	88129159	+	0	NA	Intergenic	AluY|SINE|Alu	126932	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr4.40196250.+	chr4	40196250	40196251	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2277	NM_004310	399	Hs.654594	NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
chr9.129229380.+	chr9	129229380	129229381	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56597	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr17.62075589.+	chr17	62075589	62075590	+	0	NA	promoter-TSS (NM_001191031)	promoter-TSS (NM_001191031)	-122	NM_001191031	92340	Hs.708161	NR_015354	ENSG00000224383	C17orf72	-	chromosome 17 open reading frame 72	protein-coding
chr2.52338208.-	chr2	52338208	52338209	-	0	NA	Intergenic	AluY|SINE|Alu	1078534	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr21.45566088.-	chr21	45566088	45566089	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12594	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr16.30960879.-	chr16	30960879	30960880	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-474	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr5.1300314.+	chr5	1300314	1300315	+	0	NA	Intergenic	Intergenic	-5152	NM_198253	7015	Hs.492203	NM_001193376	ENSG00000164362	TERT	DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
chr20.43040164.-	chr20	43040164	43040165	-	0	NA	"intron (NM_178850, intron 3 of 7)"	"intron (NM_178850, intron 3 of 7)"	-3404	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	miscRNA
chr13.72731956.-	chr13	72731956	72731957	-	0	NA	Intergenic	AluY|SINE|Alu	290626	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr12.57075352.-	chr12	57075352	57075353	-	0	NA	"intron (NM_006601, intron 1 of 7)"	AluSx|SINE|Alu	-6726	NM_006601	10728	Hs.50425	NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3 (cytosolic)	protein-coding
chr14.80915467.-	chr14	80915467	80915468	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218070	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr20.35605706.+	chr20	35605706	35605707	+	0	NA	Intergenic	SVA_D|Other|Other	-25460	NM_015474	25939	Hs.580681	NM_015474		SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88	SAM domain and HD domain 1	protein-coding
chr1.151043389.+	chr1	151043389	151043390	+	0	NA	"5' UTR (NM_144618, exon 1 of 9)"	"5' UTR (NM_144618, exon 1 of 9)"	309	NM_144618	126626	Hs.654699	NM_144618		GABPB2	-	"GA binding protein transcription factor, beta subunit 2"	protein-coding
chr12.121905198.-	chr12	121905198	121905199	-	0	NA	"intron (NM_032590, intron 12 of 22)"	GC_rich|Low_complexity|Low_complexity	-67277	NM_194271	80196	Hs.292804	NM_001256858	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	"ring finger protein 34, E3 ubiquitin protein ligase"	protein-coding
chr14.78062675.+	chr14	78062675	78062676	+	0	NA	"intron (NM_004863, intron 2 of 11)"	AluY|SINE|Alu	20435	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	"serine palmitoyltransferase, long chain base subunit 2"	protein-coding
chr11.113666004.-	chr11	113666004	113666005	-	0	NA	Intergenic	AluSx|SINE|Alu	-15486	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr15.66994446.-	chr15	66994446	66994447	-	0	NA	promoter-TSS (NR_027654)	promoter-TSS (NR_027654)	228	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr2.236999652.-	chr2	236999652	236999653	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-77000	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr5.159429725.-	chr5	159429725	159429726	-	0	NA	Intergenic	AluSz|SINE|Alu	6455	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr8.125234395.-	chr8	125234395	125234396	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150545	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr1.53793346.-	chr1	53793346	53793347	-	0	NA	"intron (NM_033300, intron 1 of 16)"	CpG-1137	-475	NM_004631	7804	Hs.280387	NM_001018054		LRP8	APOER2|HSZ75190|LRP-8|MCI1	"low density lipoprotein receptor-related protein 8, apolipoprotein e receptor"	protein-coding
chr22.38498795.-	chr22	38498795	38498796	-	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	-7881	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chrX.53125838.+	chrX	53125838	53125839	+	0	NA	Intergenic	AluJb|SINE|Alu	14296	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr13.53020106.-	chr13	53020106	53020107	-	0	NA	"intron (NM_016075, intron 1 of 13)"	AluSx3|SINE|Alu	-4657	NM_016075	51028	Hs.109520	NM_016075	ENSG00000136100	VPS36	C13orf9|EAP45	vacuolar protein sorting 36 homolog (S. cerevisiae)	protein-coding
chr4.49521634.-	chr4	49521634	49521635	-	0	NA	Intergenic	GSATII|Satellite|centr	-533369	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chrY.8786230.-	chrY	8786230	8786231	-	0	NA	Intergenic	SVA_C|Other|Other	100807	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr13.23713117.+	chr13	23713117	23713118	+	0	NA	Intergenic	AluY|SINE|Alu	-41943	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr18.73357732.+	chr18	73357732	73357733	+	0	NA	Intergenic	L2|LINE|L2	-218143	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr2.158052721.+	chr2	158052721	158052722	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61619	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr5.37382632.+	chr5	37382632	37382633	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3220	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr15.73830891.-	chr15	73830891	73830892	-	0	NA	"intron (NM_001042367, intron 2 of 5)"	AluYk4|SINE|Alu	-94862	NM_012428	27020	Hs.187866	NM_001161363	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
chr4.163164042.-	chr4	163164042	163164043	-	0	NA	Intergenic	AluY|SINE|Alu	78856	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr1.151628468.-	chr1	151628468	151628469	-	0	NA	"intron (NM_030918, intron 2 of 11)"	AluY|SINE|Alu	-43806	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr14.24785815.+	chr14	24785815	24785816	+	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	3502	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr5.146614560.-	chr5	146614560	146614561	-	0	NA	promoter-TSS (NM_145001)	promoter-TSS (NM_145001)	19	NM_001112724	202374	Hs.585069	NM_001112724	ENSG00000169302	STK32A	YANK1	serine/threonine kinase 32A	protein-coding
chr19.18180421.+	chr19	18180421	18180422	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17276	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chrX.69569459.+	chrX	69569459	69569460	+	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	59580	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr14.102109468.-	chr14	102109468	102109469	-	0	NA	Intergenic	AluY|SINE|Alu	-81780	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr22.39953287.-	chr22	39953287	39953288	-	0	NA	Intergenic	Intergenic	13471	NM_021096	8911	Hs.125116	NM_001003406	ENSG00000100346	CACNA1I	Cav3.3|ca(v)3.3	"calcium channel, voltage-dependent, T type, alpha 1I subunit"	protein-coding
chr2.54063001.+	chr2	54063001	54063002	+	0	NA	"intron (NM_001164165, intron 1 of 9)"	AluY|SINE|Alu	13341	NR_037453	100500850		NR_037453		MIR3682	-	microRNA 3682	miscRNA
chr12.133328251.+	chr12	133328251	133328252	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10200	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr12.34192010.-	chr12	34192010	34192011	-	0	NA	Intergenic	AluSp|SINE|Alu	-16794	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr1.93555691.+	chr1	93555691	93555692	+	0	NA	"intron (NM_001164393, intron 1 of 12)"	AluY|SINE|Alu	10899	NM_001164392	22823	Hs.712767	NM_001164391	ENSG00000143033	MTF2	M96|PCL2|RP5-976O13.1|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
chr14.102954876.+	chr14	102954876	102954877	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21252	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr21.47403465.-	chr21	47403465	47403466	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1802	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr9.77401554.-	chr9	77401554	77401555	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100709	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr17.79564833.+	chr17	79564833	79564834	+	0	NA	"intron (NM_017921, intron 9 of 16)"	AluY|SINE|Alu	39305	NM_017921	55666	Hs.464333	NM_017921	ENSG00000182446	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
chr10.133869103.-	chr10	133869103	133869104	-	0	NA	Intergenic	Intergenic	49210	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr5.1075011.+	chr5	1075011	1075012	+	0	NA	"intron (NM_006598, intron 15 of 23)"	"intron (NM_006598, intron 15 of 23)"	-11922	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr3.124469126.+	chr3	124469126	124469127	+	0	NA	Intergenic	SVA_D|Other|Other	19913	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr13.73649922.-	chr13	73649922	73649923	-	0	NA	"exon (NM_001730, exon 4 of 4)"	"exon (NM_001730, exon 4 of 4)"	-16780	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
chr9.77401571.-	chr9	77401571	77401572	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100692	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr6.70692603.+	chr6	70692603	70692604	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116155	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr4.3678854.-	chr4	3678854	3678855	-	0	NA	"intron (NR_034136, intron 1 of 2)"	"intron (NR_034136, intron 1 of 2)"	-728	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	miscRNA
chr19.54097872.+	chr19	54097872	54097873	+	0	NA	Intergenic	Intergenic	8879	NR_002938	284379	Hs.631571	NR_002938	ENSG00000268864	LOC284379	-	"solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene"	pseudo
chr21.31598714.+	chr21	31598714	31598715	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10245	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr11.72853450.+	chr11	72853450	72853451	+	0	NA	promoter-TSS (NM_014824)	promoter-TSS (NM_014824)	-307	NM_014824	9873	Hs.577053	NM_014824	ENSG00000137478	FCHSD2	NWK|SH3MD3	FCH and double SH3 domains 2	protein-coding
chr18.23534126.+	chr18	23534126	23534127	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	136485	NM_001007559	6760	Hs.129261	NM_001007559	ENSG00000141380	SS18	SSXT|SYT	"synovial sarcoma translocation, chromosome 18"	protein-coding
chr2.183551455.-	chr2	183551455	183551456	-	0	NA	Intergenic	L1PA5|LINE|L1	29313	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr1.12090084.-	chr1	12090084	12090085	-	0	NA	"intron (NM_021933, intron 7 of 9)"	"intron (NM_021933, intron 7 of 9)"	-10785	NM_021933	60672	Hs.8595	NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
chr19.47628030.+	chr19	47628030	47628031	+	0	NA	Intergenic	AluY|SINE|Alu	-6050	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr6.1377720.-	chr6	1377720	1377721	-	0	NA	Intergenic	AluSg|SINE|Alu	12349	NM_001452	2295	Hs.484423	NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
chr10.35559776.+	chr10	35559776	35559777	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23823	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr12.6167306.+	chr12	6167306	6167307	+	0	NA	"intron (NM_000552, intron 13 of 51)"	"intron (NM_000552, intron 13 of 51)"	66530	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
chr11.68671228.+	chr11	68671228	68671229	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	75	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr16.6394601.-	chr16	6394601	6394602	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluY|SINE|Alu	-325469	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr19.38335680.+	chr19	38335680	38335681	+	0	NA	"intron (NR_040015, intron 2 of 5)"	AluSg|SINE|Alu	10156	NR_040015	100631378	Hs.726940	NR_040015	ENSG00000225868	LOC100631378	-	uncharacterized 100631378	miscRNA
chr16.3109372.+	chr16	3109372	3109373	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5941	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr7.5610936.-	chr7	5610936	5610937	-	0	NA	Intergenic	AluSx1|SINE|Alu	21500	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr11.77200973.+	chr11	77200973	77200974	+	0	NA	Intergenic	SVA_D|Other|Other	-15865	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr2.71562013.+	chr2	71562013	71562014	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3128	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr7.26216464.+	chr7	26216464	26216465	+	0	NA	"intron (NM_004289, intron 1 of 3)"	SVA_A|Other|Other	23949	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
chr9.133788109.-	chr9	133788109	133788110	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	18884	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr7.532199.+	chr7	532199	532200	+	0	NA	Intergenic	Intergenic	27282	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr4.1400180.+	chr4	1400180	1400181	+	0	NA	Intergenic	CpG	14840	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr19.13070897.+	chr19	13070897	13070898	+	0	NA	Intergenic	AluY|SINE|Alu	-2829	NM_052850	90480	Hs.515164	NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CRIF1|PLINP|PLINP-1|PRG6|Plinp1	"growth arrest and DNA-damage-inducible, gamma interacting protein 1"	protein-coding
chr22.22550453.+	chr22	22550453	22550454	+	0	NA	Intergenic	Intergenic	-48747	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr12.132157771.-	chr12	132157771	132157772	-	0	NA	Intergenic	Intergenic	37861	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr7.2716349.-	chr7	2716349	2716350	-	0	NA	Intergenic	Intergenic	2814	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr13.21644835.+	chr13	21644835	21644836	+	0	NA	Intergenic	AluSx|SINE|Alu	-9113	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr17.35829208.+	chr17	35829208	35829209	+	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	-20743	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chr8.14459350.-	chr8	14459350	14459351	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251669	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr10.104209713.-	chr10	104209713	104209714	-	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	-139	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chrX.64626666.+	chrX	64626666	64626667	+	0	NA	Intergenic	MER52D|LTR|ERV1	-81949	NM_001010888	340554	Hs.21249	NM_001010888	ENSG00000102053	ZC3H12B	CXorf32|MCPIP2	zinc finger CCCH-type containing 12B	protein-coding
chr1.31727326.-	chr1	31727326	31727327	-	0	NA	Intergenic	AluY|SINE|Alu	14592	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr4.3678853.-	chr4	3678853	3678854	-	0	NA	"intron (NR_034136, intron 1 of 2)"	"intron (NR_034136, intron 1 of 2)"	-729	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	miscRNA
chr15.76627363.+	chr15	76627363	76627364	+	0	NA	Intergenic	AluSg|SINE|Alu	-1784	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr12.131551509.-	chr12	131551509	131551510	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98047	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr20.656246.-	chr20	656246	656247	-	0	NA	"5' UTR (NM_033129, exon 1 of 2)"	"5' UTR (NM_033129, exon 1 of 2)"	-577	NM_033129	85508	Hs.355284	NM_033129	ENSG00000215397	SCRT2	ZNF898B	"scratch homolog 2, zinc finger protein (Drosophila)"	protein-coding
chr7.21370293.+	chr7	21370293	21370294	+	0	NA	Intergenic	MER52D|LTR|ERV1	-97396	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chrX.29584325.-	chrX	29584325	29584326	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649350	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr1.217314038.+	chr1	217314038	217314039	+	0	NA	Intergenic	Intergenic	-2941	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr3.31574012.-	chr3	31574012	31574013	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	479	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr1.114299543.-	chr1	114299543	114299544	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2234	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chrX.69282552.+	chrX	69282552	69282553	+	0	NA	"exon (NM_207320, exon 1 of 1)"	"exon (NM_207320, exon 1 of 1)"	211	NM_207320	139562	Hs.447381	NM_207320	ENSG00000189401	OTUD6A	DUBA2|HSHIN6	OTU domain containing 6A	protein-coding
chr7.55379479.+	chr7	55379479	55379480	+	0	NA	Intergenic	SVA_D|Other|Other	-53662	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chrX.68786573.+	chrX	68786573	68786574	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49338	NM_001005610	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr11.118672111.+	chr11	118672111	118672112	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10139	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr17.78559337.-	chr17	78559337	78559338	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40712	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr4.8913675.+	chr4	8913675	8913676	+	0	NA	Intergenic	Intergenic	-37802	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr5.149844044.-	chr5	149844044	149844045	-	0	NA	Intergenic	MIRc|SINE|MIR	14725	NM_001025070	6208	Hs.381126	NM_001025070	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
chr7.4841374.+	chr7	4841374	4841375	+	0	NA	"exon (NM_018059, exon 12 of 15)"	"exon (NM_018059, exon 12 of 15)"	-13104	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	miscRNA
chr3.52030326.+	chr3	52030326	52030327	+	0	NA	promoter-TSS (NM_000992)	promoter-TSS (NM_000992)	-368	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
chr11.67346421.+	chr11	67346421	67346422	+	0	NA	Intergenic	AluY|SINE|Alu	-4645	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr12.20930583.-	chr12	20930583	20930584	-	0	NA	Intergenic	LTR12C|LTR|ERV1	33055	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr17.65843606.-	chr17	65843606	65843607	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21826	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr9.10786973.-	chr9	10786973	10786974	-	0	NA	Intergenic	AluYc3|SINE|Alu	174250	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr6.151727620.-	chr6	151727620	151727621	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14943	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr3.9429707.+	chr3	9429707	9429708	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9467	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr17.32953677.-	chr17	32953677	32953678	-	0	NA	"intron (NM_207313, intron 2 of 9)"	CpG	-45909	NM_207313	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	-	transmembrane protein 132E	protein-coding
chr8.144518204.-	chr8	144518204	144518205	-	0	NA	Intergenic	Intergenic	5602	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.136760873.+	chr2	136760873	136760874	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17651	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr2.242500486.+	chr2	242500486	242500487	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1928	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr3.171366543.+	chr3	171366543	171366544	+	0	NA	"intron (NM_002662, intron 21 of 26)"	AluY|SINE|Alu	161741	NM_001130081	5337	Hs.382865	NM_001130081	ENSG00000075651	PLD1	-	"phospholipase D1, phosphatidylcholine-specific"	protein-coding
chr12.112407409.+	chr12	112407409	112407410	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43614	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr20.57372818.+	chr20	57372818	57372819	+	0	NA	Intergenic	HAL1|LINE|L1	19931	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr1.161508244.-	chr1	161508244	161508245	-	0	NA	Intergenic	AluYf4|SINE|Alu	-11574	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr9.139071848.-	chr9	139071848	139071849	-	0	NA	Intergenic	Intergenic	-23156	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr6.88932876.+	chr6	88932876	88932877	+	0	NA	Intergenic	AluY|SINE|Alu	-57109	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chr1.178514102.+	chr1	178514102	178514103	+	0	NA	"intron (NR_033186, intron 1 of 2)"	"intron (NR_033186, intron 1 of 2)"	2171	NR_033186	400798	Hs.668085	NM_207467	ENSG00000184909	C1orf220	-	chromosome 1 open reading frame 220	miscRNA
chr8.56889735.+	chr8	56889735	56889736	+	0	NA	"intron (NM_002350, intron 10 of 12)"	AluSq|SINE|Alu	96725	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr7.5205942.+	chr7	5205942	5205943	+	0	NA	Intergenic	Intergenic	-21765	NR_034163	645700	Hs.690815	NR_034163	ENSG00000159904	ZNF890P	-	"zinc finger protein 890, pseudogene"	pseudo
chr20.5213484.-	chr20	5213484	5213485	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81531	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr17.80687689.+	chr17	80687689	80687690	+	0	NA	Intergenic	CpG	-5763	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr22.38857857.-	chr22	38857857	38857858	-	0	NA	Intergenic	CpG	6226	NM_016657	11015	Hs.528305	NM_006855	ENSG00000100196	KDELR3	ERD2L3	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding
chr16.619903.-	chr16	619903	619904	-	0	NA	promoter-TSS (NM_148920)	promoter-TSS (NM_148920)	65	NM_148920	9091	Hs.741878	NM_004204	ENSG00000007541	PIGQ	GPI1|c407A10.1	"phosphatidylinositol glycan anchor biosynthesis, class Q"	protein-coding
chr19.267160.-	chr19	267160	267161	-	0	NA	Intergenic	CpG	-24009	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr2.105867567.+	chr2	105867567	105867568	+	0	NA	Intergenic	SVA_D|Other|Other	9367	NM_007227	11250	Hs.590903	NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
chr2.128975982.+	chr2	128975982	128975983	+	0	NA	Intergenic	AluSg|SINE|Alu	100189	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr8.141504868.-	chr8	141504868	141504869	-	0	NA	Intergenic	AluSz|SINE|Alu	16529	NM_017444	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr11.62417394.+	chr11	62417394	62417395	+	0	NA	"exon (NM_030628, exon 2 of 2)"	"exon (NM_030628, exon 2 of 2)"	-3290	NM_198335	23193	Hs.595071	NM_014610	ENSG00000089597	GANAB	G2AN|GLUII	"glucosidase, alpha; neutral AB"	protein-coding
chr18.41408402.+	chr18	41408402	41408403	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550787	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr17.17767721.+	chr17	17767721	17767722	+	0	NA	"intron (NM_001033551, intron 9 of 13)"	AluY|SINE|Alu	-27396	NM_004176	6720	Hs.592123	NM_001005291	ENSG00000072310	SREBF1	SREBP-1c|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
chr2.107084256.-	chr2	107084256	107084257	-	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	-545	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chrX.9443121.+	chrX	9443121	9443122	+	0	NA	"intron (NM_005647, intron 1 of 17)"	AluSx1|SINE|Alu	9920	NM_005647	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr2.61306965.-	chr2	61306965	61306966	-	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	-13602	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr7.157451853.+	chr7	157451853	157451854	+	0	NA	"intron (NM_130842, intron 12 of 21)"	"intron (NM_130842, intron 12 of 21)"	-84739	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr6.133157599.+	chr6	133157599	133157600	+	0	NA	Intergenic	AluSx|SINE|Alu	19241	NR_002436	594839	Hs.671378	NR_002436		SNORA33	ACA33	"small nucleolar RNA, H/ACA box 33"	snoRNA
chr16.3233595.+	chr16	3233595	3233596	+	0	NA	Intergenic	CpG	-20652	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr17.26336637.-	chr17	26336637	26336638	-	0	NA	Intergenic	AluSz|SINE|Alu	33051	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr1.69778190.-	chr1	69778190	69778191	-	0	NA	Intergenic	L1PA8A|LINE|L1	447668	NM_020794	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
chr3.51853767.+	chr3	51853767	51853768	+	0	NA	TTS (NR_038214)	TTS (NR_038214)	2148	NR_038214	100506840	Hs.254808	NR_038213	ENSG00000224792	IQCF4	-	IQ motif containing F5 pseudogene	pseudo
chr16.1845097.+	chr16	1845097	1845098	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-188	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr1.27503563.-	chr1	27503563	27503564	-	0	NA	Intergenic	Intergenic	21942	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr21.33784455.-	chr21	33784455	33784456	-	0	NA	promoter-TSS (NM_058187)	promoter-TSS (NM_058187)	297	NM_058187	59271	Hs.208358	NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
chr7.810960.-	chr7	810960	810961	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43647	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr11.1266518.+	chr11	1266518	1266519	+	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	22223	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr12.66636843.-	chr12	66636843	66636844	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53865	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr12.125670796.-	chr12	125670796	125670797	-	0	NA	Intergenic	CpG	-120871	NM_023928	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
chr15.22938731.+	chr15	22938731	22938732	+	0	NA	"intron (NM_014608, intron 9 of 30)"	AluY|SINE|Alu	-17024	NM_001033028	23191	Hs.26704	NM_001033028	ENSG00000068793	CYFIP1	P140SRA-1|SHYC|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
chr12.133366760.-	chr12	133366760	133366761	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28309	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr6.164052123.-	chr6	164052123	164052124	-	0	NA	Intergenic	CpG	-216448	NM_006775	9444	Hs.510324	NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	"QKI, KH domain containing, RNA binding"	protein-coding
chr20.57148698.+	chr20	57148698	57148699	+	0	NA	"intron (NR_034147, intron 6 of 6)"	"intron (NR_034147, intron 6 of 6)"	58263	NR_034147	149773	Hs.729646	NR_034147	ENSG00000231290	APCDD1L-AS1	-	APCDD1L antisense RNA 1 (head to head)	miscRNA
chr3.98452074.+	chr3	98452074	98452075	+	0	NA	promoter-TSS (NR_046683)	promoter-TSS (NR_046683)	526	NM_006100	10402	Hs.148716	NM_001271142	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	"ST3 beta-galactoside alpha-2,3-sialyltransferase 6"	protein-coding
chr9.130743323.+	chr9	130743323	130743324	+	0	NA	promoter-TSS (NM_001035254)	promoter-TSS (NM_001035254)	-511	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr5.131838191.+	chr5	131838191	131838192	+	0	NA	Intergenic	Intergenic	-11726	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr16.89034204.+	chr16	89034204	89034205	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9300	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr7.128141997.+	chr7	128141997	128141998	+	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	25214	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr17.43255877.-	chr17	43255877	43255878	-	0	NA	Intergenic	AluY|SINE|Alu	-17613	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chrX.141491533.+	chrX	141491533	141491534	+	0	NA	Intergenic	AluY|SINE|Alu	-198457	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr4.185174153.-	chr4	185174153	185174154	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35039	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr3.71803973.-	chr3	71803973	71803974	-	0	NA	promoter-TSS (NM_001134649)	promoter-TSS (NM_001134649)	49	NM_173359	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr11.129244451.-	chr11	129244451	129244452	-	0	NA	Intergenic	CpG	1430	NM_003658	8538	Hs.591944	NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
chr18.19630091.-	chr18	19630091	19630092	-	0	NA	Intergenic	AluY|SINE|Alu	119313	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr19.56133863.-	chr19	56133863	56133864	-	0	NA	"exon (NM_203374, exon 2 of 2)"	"exon (NM_203374, exon 2 of 2)"	-2078	NM_203374	147808	Hs.53996	NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
chr20.14431912.+	chr20	14431912	14431913	+	0	NA	"intron (NM_080676, intron 3 of 16)"	AluSx|SINE|Alu	-113599	NM_013281	23767	Hs.41296	NM_013281	ENSG00000125848	FLRT3	-	fibronectin leucine rich transmembrane protein 3	protein-coding
chr8.144557289.+	chr8	144557289	144557290	+	0	NA	"intron (NM_015117, intron 5 of 11)"	"intron (NM_015117, intron 5 of 11)"	-44687	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr3.189105301.+	chr3	189105301	189105302	+	0	NA	Intergenic	AluSx3|SINE|Alu	-146918	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	miscRNA
chr19.45678457.-	chr19	45678457	45678458	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3044	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr9.135914092.+	chr9	135914092	135914093	+	0	NA	"intron (NM_001122823, intron 1 of 11)"	AluSx1|SINE|Alu	8030	NM_001122823	9328	Hs.495417	NM_001122823	ENSG00000148308	GTF3C5	TFIIIC63|TFIIICepsilon|TFiiiC2-63	"general transcription factor IIIC, polypeptide 5, 63kDa"	protein-coding
chr1.236252102.-	chr1	236252102	236252103	-	0	NA	Intergenic	Intergenic	23621	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr20.55204203.-	chr20	55204203	55204204	-	0	NA	promoter-TSS (NM_003222)	promoter-TSS (NM_003222)	155	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr17.78397566.-	chr17	78397566	78397567	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4348	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr15.41674333.+	chr15	41674333	41674334	+	0	NA	Intergenic	SVA_F|Other|Other	20325	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr19.49186327.+	chr19	49186327	49186328	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10063	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chrX.133639219.+	chrX	133639219	133639220	+	0	NA	Intergenic	AluSx|SINE|Alu	35073	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr2.235162036.-	chr2	235162036	235162037	-	0	NA	Intergenic	AluSg4|SINE|Alu	-202690	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	"secreted phosphoprotein 2, 24kDa"	protein-coding
chr9.136941034.+	chr9	136941034	136941035	+	0	NA	Intergenic	SVA_B|Other|Other	-7893	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr16.85371275.-	chr16	85371275	85371276	-	0	NA	Intergenic	MER115|DNA|hAT-Tip100	31344	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr6.150285786.-	chr6	150285786	150285787	-	0	NA	"intron (NM_025218, intron 1 of 4)"	CpG	-643	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr1.87259741.-	chr1	87259741	87259742	-	0	NA	Intergenic	AluSq|SINE|Alu	-89488	NM_001206653	51100	Hs.136309	NM_001206651		SH3GLB1	Bif-1|PPP1R70|dJ612B15.2	SH3-domain GRB2-like endophilin B1	protein-coding
chr9.128986042.-	chr9	128986042	128986043	-	0	NA	Intergenic	Intergenic	103081	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr5.172261402.-	chr5	172261402	172261403	-	0	NA	"5' UTR (NM_001031711, exon 1 of 10)"	"5' UTR (NM_001031711, exon 1 of 10)"	-179	NM_001031711	57222	Hs.509163	NM_001031711	ENSG00000113719	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
chr16.49892644.+	chr16	49892644	49892645	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-814	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr6.158438963.+	chr6	158438963	158438964	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	883	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr16.3067457.-	chr16	3067457	3067458	-	0	NA	"intron (NM_021195, intron 1 of 1)"	"intron (NM_021195, intron 1 of 1)"	-731	NM_021195	9074	Hs.533779	NM_021195	ENSG00000184697	CLDN6	-	claudin 6	protein-coding
chr2.88751674.-	chr2	88751674	88751675	-	0	NA	"exon (NM_001135649, exon 1 of 2)"	"exon (NM_001135649, exon 1 of 2)"	-379	NM_001135649	344167	Hs.716722	NM_001135649		FOXI3	-	forkhead box I3	protein-coding
chr3.126135026.-	chr3	126135026	126135027	-	0	NA	"intron (NM_182628, intron 4 of 16)"	"intron (NM_182628, intron 4 of 16)"	-21244	NM_182628	348807	Hs.591305	NM_182628	ENSG00000163885	CCDC37	-	coiled-coil domain containing 37	protein-coding
chr17.810076.-	chr17	810076	810077	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42725	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr19.18264451.-	chr19	18264451	18264452	-	0	NA	"intron (NR_073517, intron 1 of 15)"	CpG	-463	NM_005027	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr1.181074622.-	chr1	181074622	181074623	-	0	NA	Intergenic	CpG	-16984	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr6.74964960.-	chr6	74964960	74964961	-	0	NA	Intergenic	SVA_C|Other|Other	-559446	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr5.179233265.-	chr5	179233265	179233266	-	0	NA	promoter-TSS (NM_001142298)	promoter-TSS (NM_001142298)	123	NM_001142298	8878	Hs.724025	NM_001142298	ENSG00000161011	SQSTM1	A170|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
chr1.212898485.-	chr1	212898485	212898486	-	0	NA	Intergenic	SVA_B|Other|Other	25158	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr7.140400224.+	chr7	140400224	140400225	+	0	NA	"intron (NM_004546, intron 1 of 3)"	"intron (NM_004546, intron 1 of 3)"	-3347	NR_024454	100134713	Hs.743663	NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	miscRNA
chr9.115758888.+	chr9	115758888	115758889	+	0	NA	TTS (NM_001101338)	TTS (NM_001101338)	15584	NM_001101338	169834	Hs.192877	NM_001101338		ZNF883	-	zinc finger protein 883	protein-coding
chr6.34857457.+	chr6	34857457	34857458	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	419	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr12.118812072.+	chr12	118812072	118812073	+	0	NA	Intergenic	AluSx|SINE|Alu	-1322	NM_016281	51347	Hs.644420	NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
chr2.236999667.+	chr2	236999667	236999668	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	76985	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr1.2043379.-	chr1	2043379	2043380	-	0	NA	"intron (NM_001033582, intron 1 of 14)"	"intron (NM_001033582, intron 1 of 14)"	-7224	NM_001033582	5590	Hs.496255	NM_001033581	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	"protein kinase C, zeta"	protein-coding
chrX.53111568.-	chrX	53111568	53111569	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-26	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.107112636.+	chr12	107112636	107112637	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34158	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr17.3820271.+	chr17	3820271	3820272	+	0	NA	promoter-TSS (NM_002558)	promoter-TSS (NM_002558)	-311	NM_002558	5023	Hs.41735	NM_002558	ENSG00000108405	P2RX1	P2X1	"purinergic receptor P2X, ligand-gated ion channel, 1"	protein-coding
chr12.8057413.-	chr12	8057413	8057414	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31479	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr2.170687945.+	chr2	170687945	170687946	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3927	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr17.74563303.-	chr17	74563303	74563304	-	0	NA	"intron (NM_006456, intron 8 of 8)"	"intron (NM_006456, intron 8 of 8)"	-5588	NR_004395	677848		NR_004395	ENSG00000201838	SNORD1A	R38A|snR38A	"small nucleolar RNA, C/D box 1A"	snoRNA
chr2.152760069.-	chr2	152760069	152760070	-	0	NA	"intron (NM_001005746, intron 2 of 13)"	"intron (NM_001005746, intron 2 of 13)"	-70416	NM_001005747	785	Hs.120725	NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	"calcium channel, voltage-dependent, beta 4 subunit"	protein-coding
chr14.23233395.-	chr14	23233395	23233396	-	0	NA	Intergenic	FLAM_C|SINE|Alu	2336	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr4.151501099.-	chr4	151501099	151501100	-	0	NA	"intron (NM_001199282, intron 40 of 56)"	CpG	1978	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	-	mab-21-like 2 (C. elegans)	protein-coding
chr11.4258823.+	chr11	4258823	4258824	+	0	NA	Intergenic	SVA_B|Other|Other	50441	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr11.113666040.+	chr11	113666040	113666041	+	0	NA	Intergenic	AluSx|SINE|Alu	15522	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr2.90482968.-	chr2	90482968	90482969	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365007	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr19.47628016.-	chr19	47628016	47628017	-	0	NA	Intergenic	AluY|SINE|Alu	6064	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr1.212953006.-	chr1	212953006	212953007	-	0	NA	"intron (NM_001042549, intron 4 of 6)"	SVA_D|Other|Other	-12133	NM_015471	25936	Hs.497692	NM_001042549		NSL1	C1orf48|MIS14	"NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr2.38595161.+	chr2	38595161	38595162	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9271	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr2.198058521.-	chr2	198058521	198058522	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117000	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr19.39810676.-	chr19	39810676	39810677	-	0	NA	Intergenic	Intergenic	4700	NM_020862	57622	Hs.97860	NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
chr19.39903351.-	chr19	39903351	39903352	-	0	NA	promoter-TSS (NM_022835)	promoter-TSS (NM_022835)	399	NM_022835	64857	Hs.631574	NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG	"pleckstrin homology domain containing, family G (with RhoGef domain) member 2"	protein-coding
chr10.3325925.-	chr10	3325925	3325926	-	0	NA	Intergenic	AluJr|SINE|Alu	110892	NM_001242309	10531	Hs.528300	NM_014968	ENSG00000107959	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
chr11.18597862.-	chr11	18597862	18597863	-	0	NA	"intron (NM_001261384, intron 1 of 9)"	AluSx|SINE|Alu	-3203	NM_001261385	55293	Hs.407991	NM_001040698	ENSG00000151116	UEVLD	ATTP|UEV3	UEV and lactate/malate dehyrogenase domains	protein-coding
chr2.5413366.+	chr2	5413366	5413367	+	0	NA	Intergenic	AluSc|SINE|Alu	-419433	NM_003108	6664	Hs.432638	NM_003108	ENSG00000176887	SOX11	-	SRY (sex determining region Y)-box 11	protein-coding
chr19.49186336.+	chr19	49186336	49186337	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10072	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr5.3188216.-	chr5	3188216	3188217	-	0	NA	Intergenic	CpG	-347992	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr10.59351191.+	chr10	59351191	59351192	+	0	NA	Intergenic	AluY|SINE|Alu	-286872	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr2.74351449.+	chr2	74351449	74351450	+	0	NA	Intergenic	SVA_B|Other|Other	23590	NM_212552	388962	Hs.61472	NM_001035505	ENSG00000163170	BOLA3	MMDS2	bolA homolog 3 (E. coli)	protein-coding
chr6.166722177.-	chr6	166722177	166722178	-	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	306	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr10.35559771.+	chr10	35559771	35559772	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23818	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr8.144503717.-	chr8	144503717	144503718	-	0	NA	Intergenic	CpG	-8885	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr1.15927948.-	chr1	15927948	15927949	-	0	NA	Intergenic	AluSg4|SINE|Alu	16005	NM_032341	84301	Hs.718857	NM_032341		DDI2	RP4-680D5.5	DNA-damage inducible 1 homolog 2 (S. cerevisiae)	protein-coding
chr17.26662681.-	chr17	26662681	26662682	-	0	NA	promoter-TSS (NM_174887)	promoter-TSS (NM_174887)	-133	NM_021137	7126	Hs.76090	NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	"tumor necrosis factor, alpha-induced protein 1 (endothelial)"	protein-coding
chr16.65697056.+	chr16	65697056	65697057	+	0	NA	Intergenic	AluY|SINE|Alu	-86853	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LOC283867	-	uncharacterized LOC283867	miscRNA
chr3.185552098.-	chr3	185552098	185552099	-	0	NA	Intergenic	AluYa5|SINE|Alu	9271	NM_001007225	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr21.45566072.-	chr21	45566072	45566073	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12578	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr18.61255678.+	chr18	61255678	61255679	+	0	NA	"intron (NM_012397, intron 1 of 7)"	"intron (NM_012397, intron 1 of 7)"	1144	NM_012397	5275	Hs.241407	NM_012397	ENSG00000197641	SERPINB13	HSHUR7SEQ|HUR7|PI13|headpin	"serpin peptidase inhibitor, clade B (ovalbumin), member 13"	protein-coding
chr7.13901785.-	chr7	13901785	13901786	-	0	NA	Intergenic	AluY|SINE|Alu	-124354	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr5.177538255.-	chr5	177538255	177538256	-	0	NA	Intergenic	AluSp|SINE|Alu	2301	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr2.107084289.-	chr2	107084289	107084290	-	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	-512	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chr1.26849508.-	chr1	26849508	26849509	-	0	NA	Intergenic	AluSc8|SINE|Alu	6741	NM_002953	6195	Hs.149957	NM_001006665	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1A|RSK|RSK1	"ribosomal protein S6 kinase, 90kDa, polypeptide 1"	protein-coding
chr1.27503554.+	chr1	27503554	27503555	+	0	NA	Intergenic	Intergenic	-21933	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr1.53335572.-	chr1	53335572	53335573	-	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	-27389	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr22.18251535.-	chr22	18251535	18251536	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4510	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr12.33592634.-	chr12	33592634	33592635	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-120	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr15.92290035.-	chr15	92290035	92290036	-	0	NA	Intergenic	AluY|SINE|Alu	106903	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr14.64299467.-	chr14	64299467	64299468	-	0	NA	Intergenic	AluJb|SINE|Alu	20216	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr17.77162060.-	chr17	77162060	77162061	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-91041	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chrY.9930618.+	chrY	9930618	9930619	+	0	NA	Intergenic	CpG	182211	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr5.1494516.-	chr5	1494516	1494517	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29560	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr2.190692811.-	chr2	190692811	190692812	-	0	NA	"intron (NM_001128143, intron 5 of 11)"	AluY|SINE|Alu	43714	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr10.123687268.+	chr10	123687268	123687269	+	0	NA	"intron (NM_001001976, intron 1 of 11)"	CpG	278	NM_007041	11101	Hs.632080	NM_001001976	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
chr2.106672593.+	chr2	106672593	106672594	+	0	NA	Intergenic	LTR1C|LTR|ERV1	-9520	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr17.76257556.-	chr17	76257556	76257557	-	0	NA	"non-coding (NR_073178, exon 7 of 7)"	"non-coding (NR_073178, exon 7 of 7)"	-17017	NR_073178	100996291	Hs.744493	NR_073178	ENSG00000204277	LOC100996291	-	uncharacterized LOC100996291	miscRNA
chr7.157539942.-	chr7	157539942	157539943	-	0	NA	"intron (NM_130842, intron 11 of 21)"	"intron (NM_130842, intron 11 of 21)"	107335	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr15.83365808.-	chr15	83365808	83365809	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12827	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr5.137550373.-	chr5	137550373	137550374	-	0	NA	Intergenic	AluY|SINE|Alu	1341	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chrX.133565044.+	chrX	133565044	133565045	+	0	NA	Intergenic	AluSp|SINE|Alu	-29131	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr10.44870335.+	chr10	44870335	44870336	+	0	NA	TTS (NM_001033886)	TTS (NM_001033886)	10210	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr16.4835219.-	chr16	4835219	4835220	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3179	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr8.110510455.-	chr8	110510455	110510456	-	0	NA	"intron (NM_177531, intron 65 of 77)"	AluYb8|SINE|Alu	41474	NM_198120	9166	Hs.409368	NM_004215	ENSG00000147654	EBAG9	EB9|PDAF|RCAS1	"estrogen receptor binding site associated, antigen, 9"	protein-coding
chr19.48814145.+	chr19	48814145	48814146	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9187	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr9.8858137.+	chr9	8858137	8858138	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124191	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr17.18179052.-	chr17	18179052	18179053	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14628	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr8.609239.-	chr8	609239	609240	-	0	NA	Intergenic	Intergenic	-71987	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr9.129229411.-	chr9	129229411	129229412	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56628	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr22.43718282.-	chr22	43718282	43718283	-	0	NA	"intron (NM_173050, intron 2 of 21)"	AluSc8|SINE|Alu	-21112	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr19.39228193.-	chr19	39228193	39228194	-	0	NA	"exon (NM_144691, exon 9 of 21)"	"exon (NM_144691, exon 9 of 21)"	-6921	NM_144691	147968	Hs.731775	NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
chr12.129892264.-	chr12	129892264	129892265	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-495948	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr7.97361463.+	chr7	97361463	97361464	+	0	NA	"5' UTR (NM_003182, exon 1 of 7)"	"5' UTR (NM_003182, exon 1 of 7)"	192	NM_013997	6863	Hs.2563	NM_003182	ENSG00000006128	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	"tachykinin, precursor 1"	protein-coding
chr20.61371663.+	chr20	61371663	61371664	+	0	NA	"intron (NM_002531, intron 1 of 3)"	"intron (NM_002531, intron 1 of 3)"	31474	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
chr17.48422562.-	chr17	48422562	48422563	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	831	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr19.44489463.-	chr19	44489463	44489464	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1141	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr16.1123215.+	chr16	1123215	1123216	+	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	459	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr9.138437750.+	chr9	138437750	138437751	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-235	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr1.102896239.+	chr1	102896239	102896240	+	0	NA	Intergenic	AluY|SINE|Alu	-433449	NM_058170	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|NOELIN3_V1|NOELIN3_V2|NOELIN3_V3|NOELIN3_V4|NOELIN3_V5|NOELIN3_V6|OPTIMEDIN	olfactomedin 3	protein-coding
chr6.88090572.+	chr6	88090572	88090573	+	0	NA	Intergenic	AluJb|SINE|Alu	-16270	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr15.23001426.-	chr15	23001426	23001427	-	0	NA	"intron (NM_014608, intron 30 of 30)"	MLT1E2|LTR|ERVL-MaLR	-33001	NM_001008894	81614	Hs.591003	NM_001008860	ENSG00000140157	NIPA2	-	non imprinted in Prader-Willi/Angelman syndrome 2	protein-coding
chr1.236306024.-	chr1	236306024	236306025	-	0	NA	"exon (NM_003272, exon 1 of 7)"	"exon (NM_003272, exon 1 of 7)"	-192	NM_003272	7107	Hs.498160	NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
chr6.18026846.-	chr6	18026846	18026847	-	0	NA	Intergenic	AluY|SINE|Alu	38992	NM_001243423	63971	Hs.94499	NM_001105566	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
chr6.151083487.-	chr6	151083487	151083488	-	0	NA	"intron (NM_001029884, intron 3 of 16)"	AluSx1|SINE|Alu	103328	NM_001242769	25902	Hs.591343	NM_001242767	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
chr7.56109603.+	chr7	56109603	56109604	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9665	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr6.126111991.+	chr6	126111991	126111992	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	82	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr3.29288113.-	chr3	29288113	29288114	-	0	NA	Intergenic	AluY|SINE|Alu	34690	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr19.49701791.+	chr19	49701791	49701792	+	0	NA	"intron (NM_017636, intron 17 of 24)"	AluSq|SINE|Alu	40775	NM_017636	54795	Hs.467101	NM_001195227	ENSG00000130529	TRPM4	PFHB1B|TRPM4B	"transient receptor potential cation channel, subfamily M, member 4"	protein-coding
chr14.93399006.-	chr14	93399006	93399007	-	0	NA	"exon (NM_001275, exon 7 of 8)"	"exon (NM_001275, exon 7 of 8)"	-9561	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
chr1.179051077.+	chr1	179051077	179051078	+	0	NA	promoter-TSS (NM_022371)	promoter-TSS (NM_022371)	-35	NM_022371	64222	Hs.584957	NM_022371		TOR3A	ADIR|ADIR2	"torsin family 3, member A"	protein-coding
chr16.87799866.+	chr16	87799866	87799867	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-268	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr5.2391208.-	chr5	2391208	2391209	-	0	NA	Intergenic	Intergenic	-360561	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr1.228783747.-	chr1	228783747	228783748	-	0	NA	"intron (NR_037962, intron 1 of 2)"	CpG-2319	-3090	NR_002834	574029	Hs.719678	NR_002834		DUSP5P1	DUSP5P|RP4-621O15.2	dual specificity phosphatase 5 pseudogene 1	pseudo
chr11.66884085.+	chr11	66884085	66884086	+	0	NA	Intergenic	AluSx|SINE|Alu	-2655	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr21.45684307.+	chr21	45684307	45684308	+	0	NA	Intergenic	AluY|SINE|Alu	-2208	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr17.4453834.-	chr17	4453834	4453835	-	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	-4847	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr9.135406981.+	chr9	135406981	135406982	+	0	NA	"intron (NM_207417, intron 4 of 6)"	"intron (NM_207417, intron 4 of 6)"	-51012	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH-like homeobox 1	protein-coding
chr15.100080066.+	chr15	100080066	100080067	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26067	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr1.149646799.+	chr1	149646799	149646800	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70346	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr2.122461528.+	chr2	122461528	122461529	+	0	NA	"intron (NR_037857, intron 2 of 3)"	AluYb8|SINE|Alu	32975	NM_032390	84365	Hs.367842	NM_032390	ENSG00000155438	MKI67IP	NIFK|Nopp34	MKI67 (FHA domain) interacting nucleolar phosphoprotein	protein-coding
chr1.40237096.+	chr1	40237096	40237097	+	0	NA	promoter-TSS (NM_022120)	promoter-TSS (NM_022120)	-76	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	SCOTT	3-oxoacid CoA transferase 2	protein-coding
chr19.18778482.+	chr19	18778482	18778483	+	0	NA	"exon (NM_018316, exon 3 of 3)"	"exon (NM_018316, exon 3 of 3)"	-15943	NM_015321	23373	Hs.371096	NM_025021	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
chr19.17585879.+	chr19	17585879	17585880	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4579	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chrX.88129136.-	chrX	88129136	88129137	-	0	NA	Intergenic	AluY|SINE|Alu	-126910	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr9.139071828.-	chr9	139071828	139071829	-	0	NA	Intergenic	Intergenic	-23176	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr19.41641950.-	chr19	41641950	41641951	-	0	NA	Intergenic	CpG	-21597	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr19.40696476.+	chr19	40696476	40696477	+	0	NA	Intergenic	AluSx|SINE|Alu	-1175	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr12.112161113.+	chr12	112161113	112161114	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37256	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chrX.28257916.-	chrX	28257916	28257917	-	0	NA	Intergenic	AluYc|SINE|Alu	258350	NM_001017930	139425	Hs.447365	NM_001017930	ENSG00000226372	DCAF8L1	WDR42B	DDB1 and CUL4 associated factor 8-like 1	protein-coding
chr11.69451953.-	chr11	69451953	69451954	-	0	NA	Intergenic	CpG	3920	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr7.25990538.+	chr7	25990538	25990539	+	0	NA	promoter-TSS (NR_029597)	promoter-TSS (NR_029597)	-932	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148	microRNA 148a	miscRNA
chr22.16945893.-	chr22	16945893	16945894	-	0	NA	Intergenic	AluSx3|SINE|Alu	-127807	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	"chaperonin containing TCP1, subunit 8 (theta)-like 2"	protein-coding
chr16.1842954.-	chr16	1842954	1842955	-	0	NA	"intron (NM_001146006, intron 1 of 1)"	"intron (NM_001146006, intron 1 of 1)"	-780	NM_004970	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr19.4042732.+	chr19	4042732	4042733	+	0	NA	Intergenic	Intergenic	24084	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr5.20776451.-	chr5	20776451	20776452	-	0	NA	Intergenic	AluY|SINE|Alu	683138	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chrM.16327.-	chrM	16327	16328	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.219081621.+	chr2	219081621	219081622	+	0	NA	promoter-TSS (NM_005731)	promoter-TSS (NM_005731)	-196	NM_152862	10109	Hs.529303	NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|p34-Arc	"actin related protein 2/3 complex, subunit 2, 34kDa"	protein-coding
chr15.100080044.+	chr15	100080044	100080045	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26089	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr17.1174273.+	chr17	1174273	1174274	+	0	NA	"exon (NM_001164405, exon 1 of 1)"	"exon (NM_001164405, exon 1 of 1)"	415	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr2.187019225.-	chr2	187019225	187019226	-	0	NA	Intergenic	SVA_F|Other|Other	331660	NM_018471	55854	Hs.741180	NM_018471	ENSG00000065548	ZC3H15	HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
chr19.1871383.-	chr19	1871383	1871384	-	0	NA	Intergenic	Intergenic	7819	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr7.158268169.-	chr7	158268169	158268170	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57336	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr8.143361234.+	chr8	143361234	143361235	+	0	NA	"intron (NM_145003, intron 11 of 13)"	"intron (NM_145003, intron 11 of 13)"	81517	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr4.126083526.+	chr4	126083526	126083527	+	0	NA	Intergenic	AluY|SINE|Alu	-154041	NM_024582	79633	Hs.563205	NM_024582	ENSG00000196159	FAT4	CDHF14|CDHR11|FAT-J|FATJ|NBLA00548	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chr19.12606208.+	chr19	12606208	12606209	+	0	NA	Intergenic	CpG	-10576	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr11.10517166.-	chr11	10517166	10517167	-	0	NA	"exon (NM_001025389, exon 9 of 15)"	"exon (NM_001025389, exon 9 of 15)"	-12707	NR_039705	100616263		NR_039705		MIR4485	-	microRNA 4485	miscRNA
chrX.32910761.+	chrX	32910761	32910762	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127556	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr1.3022479.-	chr1	3022479	3022480	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	22060	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr2.234345207.+	chr2	234345207	234345208	+	0	NA	"intron (NM_152879, intron 7 of 29)"	"intron (NM_152879, intron 7 of 29)"	48407	NM_003648	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	"diacylglycerol kinase, delta 130kDa"	protein-coding
chr12.120856949.-	chr12	120856949	120856950	-	0	NA	Intergenic	AluSz|SINE|Alu	18944	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr17.22012682.-	chr17	22012682	22012683	-	0	NA	Intergenic	Intergenic	9755	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr14.105218001.+	chr14	105218001	105218002	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1469	NM_006427	10572	Hs.112058	NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	"SIVA1, apoptosis-inducing factor"	protein-coding
chr2.175840778.+	chr2	175840778	175840779	+	0	NA	"intron (NR_038133, intron 1 of 11)"	AluY|SINE|Alu	29203	NM_001822	1123	Hs.380138	NM_001025201	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
chr19.14156286.-	chr19	14156286	14156287	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13685	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr11.640261.-	chr11	640261	640262	-	0	NA	"exon (NM_000797, exon 3 of 4)"	"exon (NM_000797, exon 3 of 4)"	-2956	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr3.82554673.+	chr3	82554673	82554674	+	0	NA	Intergenic	MER52A|LTR|ERV1	-743723	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr22.20137586.-	chr22	20137586	20137587	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	155	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr3.37052297.+	chr3	37052297	37052298	+	0	NA	"intron (NM_001258271, intron 6 of 16)"	AluSx|SINE|Alu	17029	NM_001167618	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	"mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)"	protein-coding
chr20.60985997.-	chr20	60985997	60985998	-	0	NA	"exon (NM_080833, exon 14 of 14)"	"exon (NM_080833, exon 14 of 14)"	3658	NM_031215	81928	Hs.301040	XM_003960792	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
chr12.110562004.+	chr12	110562004	110562005	+	0	NA	promoter-TSS (NM_014055)	promoter-TSS (NM_014055)	-136	NM_014055	28981	Hs.528382	NM_001143779	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R	intraflagellar transport 81 homolog (Chlamydomonas)	protein-coding
chr11.118672065.+	chr11	118672065	118672066	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10093	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr2.241581950.-	chr2	241581950	241581951	-	0	NA	Intergenic	Intergenic	-17288	NM_005301	2859	Hs.112218	NM_001195381	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
chr11.68609534.-	chr11	68609534	68609535	-	0	NA	promoter-TSS (NM_001876)	promoter-TSS (NM_001876)	135	NM_001031847	1374	Hs.503043	NM_001031847	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A (liver)	protein-coding
chr2.178267568.+	chr2	178267568	178267569	+	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	10097	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr11.77200949.-	chr11	77200949	77200950	-	0	NA	Intergenic	SVA_D|Other|Other	15841	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr17.37768953.-	chr17	37768953	37768954	-	0	NA	Intergenic	Intergenic	4778	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr13.21644928.-	chr13	21644928	21644929	-	0	NA	Intergenic	AluSx|SINE|Alu	9206	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr2.47661297.-	chr2	47661297	47661298	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31091	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chrY.13489262.-	chrY	13489262	13489263	-	0	NA	Intergenic	CpG	-1044127	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr5.1038041.+	chr5	1038041	1038042	+	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	25048	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr2.198058477.-	chr2	198058477	198058478	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117044	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr1.236252113.-	chr1	236252113	236252114	-	0	NA	Intergenic	Intergenic	23632	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr1.247910793.-	chr1	247910793	247910794	-	0	NA	Intergenic	AluY|SINE|Alu	-10915	NM_012353	26188	Hs.381306	NM_012353		OR1C1	HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27	"olfactory receptor, family 1, subfamily C, member 1"	protein-coding
chr22.37053427.+	chr22	37053427	37053428	+	0	NA	"intron (NM_006078, intron 1 of 3)"	"intron (NM_006078, intron 1 of 3)"	45263	NM_006078	10369	Hs.146766	NM_006078		CACNG2	MRD10	"calcium channel, voltage-dependent, gamma subunit 2"	protein-coding
chr14.97183873.+	chr14	97183873	97183874	+	0	NA	Intergenic	AluY|SINE|Alu	-79811	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr7.130728473.+	chr7	130728473	130728474	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63316	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr11.9346825.-	chr11	9346825	9346826	-	0	NA	Intergenic	AluSx1|SINE|Alu	10510	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chr8.80680757.-	chr8	80680757	80680758	-	0	NA	promoter-TSS (NM_012258)	promoter-TSS (NM_012258)	659	NM_012258	23462	Hs.234434	NM_001040708	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|OAF1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding
chr22.43238152.+	chr22	43238152	43238153	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15256	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr1.183892658.-	chr1	183892658	183892659	-	0	NA	"intron (NM_015149, intron 18 of 18)"	"intron (NM_015149, intron 18 of 18)"	-114205	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr10.95605006.-	chr10	95605006	95605007	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48724	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr16.1796533.+	chr16	1796533	1796534	+	0	NA	"intron (NM_015133, intron 5 of 31)"	"intron (NM_015133, intron 5 of 31)"	11547	NR_036138	100423012		NR_036138		MIR3177	-	microRNA 3177	miscRNA
chr3.195498049.-	chr3	195498049	195498050	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40795	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr8.125151353.-	chr8	125151353	125151354	-	0	NA	Intergenic	LTR88b|LTR|Gypsy?	98330	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	miscRNA
chr17.80508956.-	chr17	80508956	80508957	-	0	NA	"intron (NM_004514, intron 1 of 8)"	AluY|SINE|Alu	-31362	NM_004514	3607	Hs.591140	NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
chr1.155579891.+	chr1	155579891	155579892	+	0	NA	promoter-TSS (NM_018116)	promoter-TSS (NM_018116)	-70	NR_046295	55154	Hs.656547	NM_001256532	ENSG00000125459	MSTO1	MST	misato homolog 1 (Drosophila)	protein-coding
chr20.61885482.+	chr20	61885482	61885483	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	152	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr5.122861575.+	chr5	122861575	122861576	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13782	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr5.39649177.+	chr5	39649177	39649178	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223842	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr5.28928058.+	chr5	28928058	28928059	+	0	NA	TTS (NR_033961)	TTS (NR_033961)	1081	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr4.569276.-	chr4	569276	569277	-	0	NA	Intergenic	CpG	50087	NM_000283	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr19.8298152.-	chr19	8298152	8298153	-	0	NA	"intron (NM_024552, intron 2 of 11)"	AluSx|SINE|Alu	-23935	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
chr2.242707668.+	chr2	242707668	242707669	+	0	NA	"3' UTR (NM_152783, exon 10 of 10)"	"3' UTR (NM_152783, exon 10 of 10)"	-8572	NM_022134	64090	Hs.632556	NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
chr22.50655069.-	chr22	50655069	50655070	-	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	-15661	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr5.18111540.+	chr5	18111540	18111541	+	0	NA	Intergenic	AluY|SINE|Alu	-724121	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr18.74140101.-	chr18	74140101	74140102	-	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	-67045	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr6.43070155.-	chr6	43070155	43070156	-	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	-25603	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr3.20353469.-	chr3	20353469	20353470	-	0	NA	Intergenic	AluYk4|SINE|Alu	125745	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr8.14882369.-	chr8	14882369	14882370	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171350	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr4.26337307.+	chr4	26337307	26337308	+	0	NA	"intron (NM_015874, intron 1 of 10)"	AluY|SINE|Alu	14878	NM_203284	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
chr2.102559076.+	chr2	102559076	102559077	+	0	NA	Intergenic	AluY|SINE|Alu	-49230	NM_004633	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	"interleukin 1 receptor, type II"	protein-coding
chr16.340980.-	chr16	340980	340981	-	0	NA	"intron (NM_181050, intron 8 of 9)"	"intron (NM_181050, intron 8 of 9)"	-7862	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr3.22843194.-	chr3	22843194	22843195	-	0	NA	Intergenic	L1PA2|LINE|L1	401590	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr14.102109517.-	chr14	102109517	102109518	-	0	NA	Intergenic	AluY|SINE|Alu	-81829	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr19.10408165.-	chr19	10408165	10408166	-	0	NA	TTS (NM_003259)	TTS (NM_003259)	-7510	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr14.105618896.+	chr14	105618896	105618897	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16265	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr1.55483737.+	chr1	55483737	55483738	+	0	NA	Intergenic	AluSx1|SINE|Alu	19120	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr4.185174244.-	chr4	185174244	185174245	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35130	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr17.74379497.-	chr17	74379497	74379498	-	0	NA	Intergenic	CpG	1193	NM_021972	8877	Hs.68061	NM_001142601	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
chr9.138065647.+	chr9	138065647	138065648	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7808	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr2.112443510.-	chr2	112443510	112443511	-	0	NA	Intergenic	AluY|SINE|Alu	190818	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	LOC541471	-	uncharacterized LOC541471	miscRNA
chrX.100304233.+	chrX	100304233	100304234	+	0	NA	"intron (NM_001167972, intron 1 of 12)"	AluJr4|SINE|Alu	2872	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr19.55980979.-	chr19	55980979	55980980	-	0	NA	Intergenic	AluSp|SINE|Alu	6720	NM_033113	89887	Hs.525209	NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
chr1.78230538.-	chr1	78230538	78230539	-	0	NA	Intergenic	AluSz|SINE|Alu	4974	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr19.48814186.-	chr19	48814186	48814187	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9146	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr4.103422416.+	chr4	103422416	103422417	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-70	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr2.27526290.+	chr2	27526290	27526291	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4840	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr8.60674674.-	chr8	60674674	60674675	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519280	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chrX.153657084.+	chrX	153657084	153657085	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	106	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr1.54966400.+	chr1	54966400	54966401	+	0	NA	Intergenic	AluSq|SINE|Alu	-47407	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr1.229694167.-	chr1	229694167	229694168	-	0	NA	"exon (NM_012089, exon 1 of 13)"	"exon (NM_012089, exon 1 of 13)"	-275	NM_012089	23456	Hs.17614	NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	"ATP-binding cassette, sub-family B (MDR/TAP), member 10"	protein-coding
chrX.70493530.-	chrX	70493530	70493531	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9512	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr21.15353710.+	chr21	15353710	15353711	+	0	NA	promoter-TSS (NR_027270)	promoter-TSS (NR_027270)	-945	NR_027270	391267	Hs.364456	NM_153750	ENSG00000215559	ANKRD20A11P	C21orf81	"ankyrin repeat domain 20 family, member A11, pseudogene"	pseudo
chr20.31414390.-	chr20	31414390	31414391	-	0	NA	"intron (NM_012325, intron 2 of 6)"	AluSz|SINE|Alu	-6691	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	"microtubule-associated protein, RP/EB family, member 1"	protein-coding
chr2.25757625.-	chr2	25757625	25757626	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-115466	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr18.41408398.+	chr18	41408398	41408399	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550783	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr15.41613502.-	chr15	41613502	41613503	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11317	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr20.45571658.+	chr20	45571658	45571659	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48395	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr11.1529299.+	chr11	1529299	1529300	+	0	NA	"intron (NM_053005, intron 2 of 5)"	"intron (NM_053005, intron 2 of 5)"	-21351	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr14.93564784.+	chr14	93564784	93564785	+	0	NA	"intron (NM_014216, intron 2 of 10)"	AluY|SINE|Alu	17479	NM_001142593	3705	Hs.308122	NM_001142593	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
chr16.31449007.-	chr16	31449007	31449008	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5341	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr15.89219686.-	chr15	89219686	89219687	-	0	NA	Intergenic	AluSx|SINE|Alu	-37647	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
chr10.76620833.-	chr10	76620833	76620834	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34662	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr10.5855699.+	chr10	5855699	5855700	+	0	NA	promoter-TSS (NM_001115156)	promoter-TSS (NM_001115156)	-187	NM_001494	2665	Hs.299055	NM_001115156	ENSG00000057608	GDI2	RABGDIB	GDP dissociation inhibitor 2	protein-coding
chr20.50808452.-	chr20	50808452	50808453	-	0	NA	promoter-TSS (NM_018197)	promoter-TSS (NM_018197)	-72	NM_199426	55734	Hs.473082	NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
chr7.1156319.+	chr7	1156319	1156320	+	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	21574	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chr1.114299527.+	chr1	114299527	114299528	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2250	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr5.10655834.+	chr5	10655834	10655835	+	0	NA	"3' UTR (NM_001164440, exon 4 of 4)"	"3' UTR (NM_001164440, exon 4 of 4)"	91399	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chr19.6307855.+	chr19	6307855	6307856	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25785	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr9.36859999.-	chr9	36859999	36860000	-	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	-4306	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr18.21826546.-	chr18	21826546	21826547	-	0	NA	"intron (NM_001242508, intron 3 of 15)"	AluSx|SINE|Alu	-25650	NM_018030	114876	Hs.370725	NM_001242508	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
chr16.70133242.+	chr16	70133242	70133243	+	0	NA	Intergenic	AluY|SINE|Alu	-14287	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr12.133141205.-	chr12	133141205	133141206	-	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	-45832	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr19.27731980.+	chr19	27731980	27731981	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	552868	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr2.202046040.-	chr2	202046040	202046041	-	0	NA	Intergenic	AluSz|SINE|Alu	1581	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr22.17719101.+	chr22	17719101	17719102	+	0	NA	Intergenic	AluSg|SINE|Alu	-28322	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr20.45571699.-	chr20	45571699	45571700	-	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	-48436	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr3.11610267.+	chr3	11610267	11610268	+	0	NA	"5' UTR (NM_001128221, exon 1 of 4)"	"5' UTR (NM_001128221, exon 1 of 4)"	131	NM_001128221	9686	Hs.740389	NM_001128219	ENSG00000144560	VGLL4	VGL-4	vestigial like 4 (Drosophila)	protein-coding
chr1.50893468.-	chr1	50893468	50893469	-	0	NA	Intergenic	CpG	4349	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT-like family A2	protein-coding
chr1.9832310.+	chr1	9832310	9832311	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52240	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr16.88387035.+	chr16	88387035	88387036	+	0	NA	Intergenic	L2b|LINE|L2	-106844	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr9.139071785.-	chr9	139071785	139071786	-	0	NA	Intergenic	Intergenic	-23219	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr16.3203797.-	chr16	3203797	3203798	-	0	NA	Intergenic	AluSg|SINE|Alu	-18663	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr1.145400449.+	chr1	145400449	145400450	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12742	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr16.30960892.-	chr16	30960892	30960893	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-487	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr12.34494621.-	chr12	34494621	34494622	-	0	NA	Intergenic	CpG	-319405	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr22.30753762.+	chr22	30753762	30753763	+	0	NA	promoter-TSS (NM_001005409)	promoter-TSS (NM_001005409)	-849	NM_005877	10291	Hs.505597	NM_001005409	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	"splicing factor 3a, subunit 1, 120kDa"	protein-coding
chr19.14202024.-	chr19	14202024	14202025	-	0	NA	promoter-TSS (NM_138352)	promoter-TSS (NM_138352)	792	NM_138352	90378	Hs.140309	NM_138352		SAMD1	-	sterile alpha motif domain containing 1	protein-coding
chr1.6132054.-	chr1	6132054	6132055	-	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	-25880	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr15.97879785.-	chr15	97879785	97879786	-	0	NA	Intergenic	AluSp|SINE|Alu	-537874	NR_024172	91948	Hs.130423	NR_024172	ENSG00000251209	LOC91948	-	uncharacterized LOC91948	miscRNA
chr12.34500227.+	chr12	34500227	34500228	+	0	NA	Intergenic	Intergenic	325011	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr1.19229006.+	chr1	19229006	19229007	+	0	NA	"exon (NM_170726, exon 1 of 16)"	"exon (NM_170726, exon 1 of 16)"	287	NM_170726	8659	Hs.77448	NM_001161504	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	"aldehyde dehydrogenase 4 family, member A1"	protein-coding
chr14.23845006.+	chr14	23845006	23845007	+	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	-1011	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr6.10723376.+	chr6	10723376	10723377	+	0	NA	"5' UTR (NM_016462, exon 1 of 6)"	"5' UTR (NM_016462, exon 1 of 6)"	228	NM_001165258	51522	Hs.519557	NM_001165258	ENSG00000111843	TMEM14C	C6orf53|MSTP073|NET26|bA421M1.6	transmembrane protein 14C	protein-coding
chr14.103988576.-	chr14	103988576	103988577	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-620	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chrX.79347397.+	chrX	79347397	79347398	+	0	NA	Intergenic	AluY|SINE|Alu	69655	NM_016954	50945	Hs.374253	NM_001109878	ENSG00000122145	TBX22	CLPA|CPX|TBXX|dJ795G23.1	T-box 22	protein-coding
chr3.36494774.-	chr3	36494774	36494775	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72677	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr9.131639078.+	chr9	131639078	131639079	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5276	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr19.38335692.+	chr19	38335692	38335693	+	0	NA	"intron (NR_040015, intron 2 of 5)"	AluSg|SINE|Alu	10144	NR_040015	100631378	Hs.726940	NR_040015	ENSG00000225868	LOC100631378	-	uncharacterized 100631378	miscRNA
chr10.6255585.-	chr10	6255585	6255586	-	0	NA	"intron (NM_004566, intron 1 of 14)"	"intron (NM_004566, intron 1 of 14)"	-10745	NM_004566	5209	Hs.195471	NM_001145443	ENSG00000170525	PFKFB3	IPFK2|PFK2	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3"	protein-coding
chr14.88199446.-	chr14	88199446	88199447	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260169	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr5.177651641.+	chr5	177651641	177651642	+	0	NA	"intron (NM_153373, intron 5 of 12)"	"intron (NM_153373, intron 5 of 12)"	8162	NM_153373	85007	Hs.248746	NM_032921	ENSG00000175309	AGXT2L2	PHLU	alanine-glyoxylate aminotransferase 2-like 2	protein-coding
chr3.46792329.+	chr3	46792329	46792330	+	0	NA	Intergenic	CpG	-6084	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr20.14910708.+	chr20	14910708	14910709	+	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	-547	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr17.73257596.+	chr17	73257596	73257597	+	0	NA	promoter-TSS (NM_015971)	promoter-TSS (NM_015971)	111	NM_014001	23163	Hs.87726	NM_001172703	ENSG00000125447	GGA3	-	"golgi-associated, gamma adaptin ear containing, ARF binding protein 3"	protein-coding
chr5.179167545.-	chr5	179167545	179167546	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7694	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chrX.129231009.+	chrX	129231009	129231010	+	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	13466	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr4.37688028.+	chr4	37688028	37688029	+	0	NA	promoter-TSS (NM_001085399)	promoter-TSS (NM_001085399)	-29	NM_001085400	768211	Hs.708605	NM_001085399	ENSG00000181826	RELL1	-	RELT-like 1	protein-coding
chr11.1864079.+	chr11	1864079	1864080	+	0	NA	Intergenic	Intergenic	2647	NM_001145841	7136	Hs.523403	NM_001145829	ENSG00000130598	TNNI2	AMCD2B|DA2B|FSSV|fsTnI	"troponin I type 2 (skeletal, fast)"	protein-coding
chr4.682787.+	chr4	682787	682788	+	0	NA	"exon (NM_032219, exon 1 of 10)"	"exon (NM_032219, exon 1 of 10)"	186	NM_032219	84179	Hs.567612	NM_032219	ENSG00000169026	MFSD7	-	major facilitator superfamily domain containing 7	protein-coding
chr11.743424.+	chr11	743424	743425	+	0	NA	Intergenic	AluY|SINE|Alu	-4008	NM_006755	6888	Hs.438678	NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
chr10.28821781.-	chr10	28821781	28821782	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-359	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr20.61428908.+	chr20	61428908	61428909	+	0	NA	"intron (NM_018270, intron 2 of 4)"	"intron (NM_018270, intron 2 of 4)"	1103	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr19.55842314.+	chr19	55842314	55842315	+	0	NA	Intergenic	AluSg|SINE|Alu	-5606	NM_001085488	284417	Hs.382625	NM_001085488	ENSG00000180061	TMEM150B	TMEM224	transmembrane protein 150B	protein-coding
chr10.69822273.+	chr10	69822273	69822274	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12830	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr2.61701813.+	chr2	61701813	61701814	+	0	NA	Intergenic	AluSg|SINE|Alu	-3964	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr15.90792647.+	chr15	90792647	90792648	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-117	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chrX.141491659.+	chrX	141491659	141491660	+	0	NA	Intergenic	AluY|SINE|Alu	-198583	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr2.91874379.+	chr2	91874379	91874380	+	0	NA	Intergenic	CpG	-26404	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr11.1689996.+	chr11	1689996	1689997	+	0	NA	TTS (NR_026643)	TTS (NR_026643)	3167	NR_026643	387742	Hs.567908	NR_026643	ENSG00000205866	FAM99A	-	"family with sequence similarity 99, member A (non-protein coding)"	miscRNA
chrX.53808317.+	chrX	53808317	53808318	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94620	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr19.10041249.+	chr19	10041249	10041250	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5821	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr10.17622238.-	chr10	17622238	17622239	-	0	NA	Intergenic	AluY|SINE|Alu	-37135	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr4.93787959.+	chr4	93787959	93787960	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562409	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr6.126111910.+	chr6	126111910	126111911	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	1	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr16.22675584.+	chr16	22675584	22675585	+	0	NA	Intergenic	AluJr|SINE|Alu	-54019	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr18.11959839.+	chr18	11959839	11959840	+	0	NA	Intergenic	SVA_D|Other|Other	-21588	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr3.102974047.+	chr3	102974047	102974048	+	0	NA	Intergenic	SVA_D|Other|Other	820188	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr2.10302123.+	chr2	10302123	10302124	+	0	NA	"intron (NM_182626, intron 2 of 2)"	"intron (NM_182626, intron 2 of 2)"	20142	NM_182626	348738	Hs.454981	NM_182626		C2orf48	-	chromosome 2 open reading frame 48	protein-coding
chr8.142555494.+	chr8	142555494	142555495	+	0	NA	Intergenic	Intergenic	-38164	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr3.60485405.-	chr3	60485405	60485406	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	-751728	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr7.5257654.+	chr7	5257654	5257655	+	0	NA	"intron (NM_001033519, intron 6 of 11)"	"intron (NM_001033519, intron 6 of 11)"	3754	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr5.21484613.+	chr5	21484613	21484614	+	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	25024	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr8.98771853.+	chr8	98771853	98771854	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15956	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr4.149220711.-	chr4	149220711	149220712	-	0	NA	"intron (NM_001166104, intron 2 of 7)"	MER61-int|LTR|ERV1	-142961	NM_000901	4306	Hs.163924	NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	"nuclear receptor subfamily 3, group C, member 2"	protein-coding
chr11.64628373.+	chr11	64628373	64628374	+	0	NA	"intron (NM_006795, intron 2 of 4)"	AluSg7|SINE|Alu	-16332	NM_017525	55561	Hs.293590	NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding
chr12.49856947.-	chr12	49856947	49856948	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73990	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr14.102109467.-	chr14	102109467	102109468	-	0	NA	Intergenic	AluY|SINE|Alu	-81779	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr11.62438097.-	chr11	62438097	62438098	-	0	NA	"intron (NM_024099, intron 1 of 6)"	AluY|SINE|Alu	1029	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chr9.129229308.+	chr9	129229308	129229309	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56525	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr15.63229208.+	chr15	63229208	63229209	+	0	NA	Intergenic	AluSp|SINE|Alu	-105630	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr4.41218610.+	chr4	41218610	41218611	+	0	NA	Intergenic	CpG	-1975	NM_173075	323	Hs.479602	NM_001166050	ENSG00000163697	APBB2	FE65L|FE65L1	"amyloid beta (A4) precursor protein-binding, family B, member 2"	protein-coding
chr19.36571209.+	chr19	36571209	36571210	+	0	NA	"intron (NM_173636, intron 9 of 31)"	AluY|SINE|Alu	25426	NM_001083961	284403	Hs.116244	NM_001083961	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
chr2.174617791.-	chr2	174617791	174617792	-	0	NA	Intergenic	AluSx4|SINE|Alu	-211156	NM_001017371	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr3.164852013.-	chr3	164852013	164852014	-	0	NA	Intergenic	AluY|SINE|Alu	55730	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr7.519537.-	chr7	519537	519538	-	0	NA	Intergenic	Intergenic	-39944	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr14.55707703.+	chr14	55707703	55707704	+	0	NA	Intergenic	Intergenic	-30318	NM_017943	55030	Hs.654725	NM_017943	ENSG00000178974	FBXO34	Fbx34	F-box protein 34	protein-coding
chr11.1122327.+	chr11	1122327	1122328	+	0	NA	Intergenic	Intergenic	47452	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr4.49332360.-	chr4	49332360	49332361	-	0	NA	Intergenic	ACRO1|Satellite|acro	-344095	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr3.49047695.+	chr3	49047695	49047696	+	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	3058	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr6.95173092.-	chr6	95173092	95173093	-	0	NA	Intergenic	L1MA3|LINE|L1	-756291	NR_015362	643432	Hs.509936	NR_015362		TSG1	-	tumor suppressor TSG1	miscRNA
chr22.24237309.-	chr22	24237309	24237310	-	0	NA	TTS (NM_002415)	TTS (NM_002415)	-744	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr1.5005211.+	chr1	5005211	5005212	+	0	NA	Intergenic	Intergenic	290106	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr10.121799467.+	chr10	121799467	121799468	+	0	NA	Intergenic	AluSz6|SINE|Alu	81442	NR_039830	100616322		NR_039830	ENSG00000265370	MIR4682	-	microRNA 4682	miscRNA
chr3.185541174.+	chr3	185541174	185541175	+	0	NA	"intron (NM_006548, intron 1 of 15)"	CpG	1653	NM_006548	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr11.72337205.+	chr11	72337205	72337206	+	0	NA	"intron (NM_002599, intron 2 of 30)"	"intron (NM_002599, intron 2 of 30)"	-11031	NR_029603	406931		NR_029603		MIR139	MIR139-3p|MIRN139	microRNA 139	miscRNA
chr2.1896213.-	chr2	1896213	1896214	-	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	147922	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr2.47661289.-	chr2	47661289	47661290	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31083	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr1.4363483.+	chr1	4363483	4363484	+	0	NA	Intergenic	Intergenic	-108628	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	miscRNA
chr6.392493.+	chr6	392493	392494	+	0	NA	"intron (NR_046000, intron 1 of 9)"	CpG	754	NM_002460	3662	Hs.401013	NM_001195286	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
chr1.28207929.+	chr1	28207929	28207930	+	0	NA	"intron (NM_004848, intron 3 of 4)"	AluY|SINE|Alu	8874	NM_001039477	9473	Hs.10649	NM_001039477	ENSG00000130775	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
chr9.10974623.+	chr9	10974623	10974624	+	0	NA	Intergenic	L1PBa|LINE|L1	-361900	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr19.2245717.-	chr19	2245717	2245718	-	0	NA	"intron (NM_007165, intron 5 of 8)"	"intron (NM_007165, intron 5 of 8)"	3396	NM_000479	268	Hs.112432	NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
chr11.1158825.+	chr11	1158825	1158826	+	0	NA	Intergenic	Intergenic	83950	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr4.120326278.-	chr4	120326278	120326279	-	0	NA	TTS (NR_037596)	TTS (NR_037596)	-5537	NR_037596	401149	Hs.531400	NR_037596		FLJ14186	-	uncharacterized LOC401149	miscRNA
chr19.1010974.+	chr19	1010974	1010975	+	0	NA	"intron (NM_033420, intron 9 of 9)"	CpG-12171	10167	NM_001033026	91304	Hs.515003	NM_001033026	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
chr2.74351448.+	chr2	74351448	74351449	+	0	NA	Intergenic	SVA_B|Other|Other	23591	NM_212552	388962	Hs.61472	NM_001035505	ENSG00000163170	BOLA3	MMDS2	bolA homolog 3 (E. coli)	protein-coding
chr22.50987287.+	chr22	50987287	50987288	+	0	NA	"exon (NM_138433, exon 1 of 1)"	"exon (NM_138433, exon 1 of 1)"	825	NM_138433	113730	Hs.137007	NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
chr16.80278045.+	chr16	80278045	80278046	+	0	NA	Intergenic	SVA_F|Other|Other	-296809	NM_130897	83657	Hs.98849	NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	"dynein, light chain, roadblock-type 2"	protein-coding
chr20.55221013.-	chr20	55221013	55221014	-	0	NA	Intergenic	AluY|SINE|Alu	-16655	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr4.186162049.-	chr4	186162049	186162050	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30765	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr4.22477123.-	chr4	22477123	22477124	-	0	NA	"intron (NM_145290, intron 1 of 18)"	AluY|SINE|Alu	-40554	NM_145290	166647	Hs.99195	NM_145290	ENSG00000152990	GPR125	PGR21|TEM5L	G protein-coupled receptor 125	protein-coding
chr17.73439487.-	chr17	73439487	73439488	-	0	NA	Intergenic	AluSg4|SINE|Alu	13177	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr21.33784821.-	chr21	33784821	33784822	-	0	NA	promoter-TSS (NM_058187)	promoter-TSS (NM_058187)	-69	NM_058187	59271	Hs.208358	NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
chr20.19987666.+	chr20	19987666	19987667	+	0	NA	Intergenic	AluY|SINE|Alu	-10268	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr18.41408424.+	chr18	41408424	41408425	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550809	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr11.1804392.-	chr11	1804392	1804393	-	0	NA	Intergenic	Intergenic	18891	NM_053005	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr5.172599826.-	chr5	172599826	172599827	-	0	NA	Intergenic	AluSc8|SINE|Alu	-28381	NM_013979	662	Hs.145726	NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2/adenovirus E1B 19kDa interacting protein 1	protein-coding
chrX.147774579.+	chrX	147774579	147774580	+	0	NA	"intron (NM_002025, intron 3 of 20)"	AluY|SINE|Alu	-26036	NM_001170628	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr12.133812260.+	chr12	133812260	133812261	+	0	NA	"intron (NM_001191054, intron 1 of 8)"	C-rich|Low_complexity|Low_complexity	162	NM_001191054	647589	Hs.703008	NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
chr9.38829866.-	chr9	38829866	38829867	-	0	NA	Intergenic	AluY|SINE|Alu	-208781	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr19.23474393.+	chr19	23474393	23474394	+	0	NA	Intergenic	AluSx|SINE|Alu	-41221	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr9.111476104.+	chr9	111476104	111476105	+	0	NA	Intergenic	L1PA7|LINE|L1	142171	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr10.35356862.+	chr10	35356862	35356863	+	0	NA	"intron (NM_001198778, intron 2 of 20)"	AluY|SINE|Alu	6396	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr9.425345.-	chr9	425345	425346	-	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	44949	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr19.48477820.-	chr19	48477820	48477821	-	0	NA	"intron (NM_001128326, intron 5 of 5)"	AluSx1|SINE|Alu	-17607	NM_001128326	100131137	Hs.651072	NM_001128326	ENSG00000188334	BSPH1	BSP1|ELSPBP2	binder of sperm protein homolog 1	protein-coding
chr19.2705113.-	chr19	2705113	2705114	-	0	NA	Intergenic	AluSc8|SINE|Alu	2367	NM_052847	2788	Hs.735237	NM_052847	ENSG00000176533	GNG7	-	"guanine nucleotide binding protein (G protein), gamma 7"	protein-coding
chr2.81982162.+	chr2	81982162	81982163	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101765	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr7.79686540.-	chr7	79686540	79686541	-	0	NA	Intergenic	AluY|SINE|Alu	77600	NM_002069	2770	Hs.134587	NM_001256414	ENSG00000127955	GNAI1	Gi	"guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1"	protein-coding
chrX.48871381.-	chrX	48871381	48871382	-	0	NA	Intergenic	AluY|SINE|Alu	12706	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr19.11060471.+	chr19	11060471	11060472	+	0	NA	Intergenic	AluY|SINE|Alu	-11127	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr10.73848192.+	chr10	73848192	73848193	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	339	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr15.100514150.+	chr15	100514150	100514151	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-167018	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr1.3022483.+	chr1	3022483	3022484	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22056	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr3.158906017.-	chr3	158906017	158906018	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	AluSq2|SINE|Alu	85019	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr14.106359700.-	chr14	106359700	106359701	-	0	NA	Intergenic	Intergenic	24138	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr2.242447218.+	chr2	242447218	242447219	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	557	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr14.101892563.+	chr14	101892563	101892564	+	0	NA	Intergenic	AluY|SINE|Alu	129450	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr5.175488237.-	chr5	175488237	175488238	-	0	NA	Intergenic	CpG	2475	NM_001265615	202134	Hs.368516	NM_001079529	ENSG00000182230	FAM153B	-	"family with sequence similarity 153, member B"	protein-coding
chr3.13876367.-	chr3	13876367	13876368	-	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	-45251	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr2.242530124.-	chr2	242530124	242530125	-	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	-26792	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr17.2594891.+	chr17	2594891	2594892	+	0	NA	"intron (NM_015229, intron 25 of 25)"	"intron (NM_015229, intron 25 of 25)"	20036	NM_015229	23277	Hs.22616	NM_015229	ENSG00000132361	CLUH	CLU1|KIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding
chr7.102105580.-	chr7	102105580	102105581	-	0	NA	promoter-TSS (NM_017621)	promoter-TSS (NM_017621)	-190	NM_152892	222229	Hs.274135	NM_152892	ENSG00000161036	LRWD1	CENP-33|ORCA	leucine-rich repeats and WD repeat domain containing 1	protein-coding
chr2.228067294.-	chr2	228067294	228067295	-	0	NA	"intron (NM_000091, intron 1 of 51)"	AluYk4|SINE|Alu	-38013	NM_000091	1285	Hs.570065	NM_000091	ENSG00000169031	COL4A3	-	"collagen, type IV, alpha 3 (Goodpasture antigen)"	protein-coding
chr2.110631829.+	chr2	110631829	110631830	+	0	NA	Intergenic	AluY|SINE|Alu	-24180	NR_027467	96626	Hs.535619	NM_033514	ENSG00000256977	LIMS3	PINCH-3	LIM and senescent cell antigen-like domains 3	protein-coding
chr2.242447173.-	chr2	242447173	242447174	-	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	-602	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr21.34398050.-	chr21	34398050	34398051	-	0	NA	promoter-TSS (NM_005806)	promoter-TSS (NM_005806)	166	NM_005806	10215	Hs.732068	NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte lineage transcription factor 2	protein-coding
chr9.425257.-	chr9	425257	425258	-	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	45037	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr16.88183003.-	chr16	88183003	88183004	-	0	NA	Intergenic	Intergenic	-179379	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr10.134912800.-	chr10	134912800	134912801	-	0	NA	"intron (NM_001083909, intron 4 of 6)"	"intron (NM_001083909, intron 4 of 6)"	-11391	NM_001083909	84435	Hs.435183	NM_032422	ENSG00000197177	GPR123	-	G protein-coupled receptor 123	protein-coding
chr4.163164040.+	chr4	163164040	163164041	+	0	NA	Intergenic	AluY|SINE|Alu	-78854	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr1.40260013.+	chr1	40260013	40260014	+	0	NA	Intergenic	AluY|SINE|Alu	-5480	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr5.1494520.-	chr5	1494520	1494521	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29556	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr2.229496800.+	chr2	229496800	229496801	+	0	NA	Intergenic	AluYc|SINE|Alu	-450439	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr15.92290040.-	chr15	92290040	92290041	-	0	NA	Intergenic	AluY|SINE|Alu	106898	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr18.3623549.-	chr18	3623549	3623550	-	0	NA	"intron (NM_001242765, intron 4 of 8)"	AluSx|SINE|Alu	-29437	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	miscRNA
chr20.33283478.-	chr20	33283478	33283479	-	0	NA	Intergenic	AluY|SINE|Alu	8670	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr14.23526815.-	chr14	23526815	23526816	-	0	NA	promoter-TSS (NM_022478)	promoter-TSS (NM_022478)	68	NM_022478	64403	Hs.155912	NM_022478	ENSG00000139880	CDH24	CDH11L	"cadherin 24, type 2"	protein-coding
chr10.101292641.+	chr10	101292641	101292642	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-49	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr3.49368433.+	chr3	49368433	49368434	+	0	NA	"intron (NM_001251877, intron 2 of 6)"	AluY|SINE|Alu	9103	NM_001251877	7375	Hs.403828	NM_001251877	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
chr13.27144150.+	chr13	27144150	27144151	+	0	NA	"intron (NM_006646, intron 1 of 9)"	AluSq2|SINE|Alu	12310	NM_006646	10810	Hs.618732	NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	"WAS protein family, member 3"	protein-coding
chr21.14392459.-	chr21	14392459	14392460	-	0	NA	Intergenic	AluSx1|SINE|Alu	18028	NR_026916	149992	Hs.579474	NR_026916		ANKRD30BP2	C21orf99|CT85|CTSP-1|CTSP1	ankyrin repeat domain 30B pseudogene 2	pseudo
chr9.128986110.-	chr9	128986110	128986111	-	0	NA	Intergenic	Intergenic	103013	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr7.821268.+	chr7	821268	821269	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33926	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr11.119091811.+	chr11	119091811	119091812	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14825	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr8.3825577.+	chr8	3825577	3825578	+	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	1026751	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr19.1818380.-	chr19	1818380	1818381	-	0	NA	"intron (NM_020695, intron 10 of 15)"	"intron (NM_020695, intron 10 of 15)"	2143	NR_031730	100302210		NR_031730		MIR1909	MIRN1909|hsa-mir-1909	microRNA 1909	miscRNA
chr2.43254186.+	chr2	43254186	43254187	+	0	NA	Intergenic	Intergenic	199559	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr7.128141916.-	chr7	128141916	128141917	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25133	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr1.1836817.+	chr1	1836817	1836818	+	0	NA	Intergenic	AluSx|SINE|Alu	-9449	NM_138705	163688	Hs.85902	NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin-like 6	protein-coding
chr11.65563825.+	chr11	65563825	65563826	+	0	NA	"3' UTR (NM_004561, exon 4 of 4)"	"3' UTR (NM_004561, exon 4 of 4)"	9320	NM_004561	5017	Hs.134434	NM_004561	ENSG00000172818	OVOL1	HOVO1	ovo-like 1(Drosophila)	protein-coding
chr2.905827.+	chr2	905827	905828	+	0	NA	Intergenic	Intergenic	-40727	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr14.34924150.+	chr14	34924150	34924151	+	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	7318	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr17.2731914.-	chr17	2731914	2731915	-	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	-32182	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr7.1798956.+	chr7	1798956	1798957	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50158	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr11.18743345.-	chr11	18743345	18743346	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4432	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr11.66676699.+	chr11	66676699	66676700	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1359	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr5.42921825.+	chr5	42921825	42921826	+	0	NA	Intergenic	AluY|SINE|Alu	97088	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	miscRNA
chr8.144504249.+	chr8	144504249	144504250	+	0	NA	Intergenic	Intergenic	8353	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.122475130.-	chr2	122475130	122475131	-	0	NA	"intron (NR_037857, intron 3 of 3)"	AluSq2|SINE|Alu	-19373	NM_032390	84365	Hs.367842	NM_032390	ENSG00000155438	MKI67IP	NIFK|Nopp34	MKI67 (FHA domain) interacting nucleolar phosphoprotein	protein-coding
chr12.132293450.-	chr12	132293450	132293451	-	0	NA	Intergenic	CpG	19491	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr16.82671299.+	chr16	82671299	82671300	+	0	NA	"intron (NM_001220491, intron 1 of 4)"	AluY|SINE|Alu	10900	NM_001220488	1012	Hs.661776	NM_001220488	ENSG00000140945	CDH13	CDHH|P105	"cadherin 13, H-cadherin (heart)"	protein-coding
chr15.29089029.-	chr15	29089029	29089030	-	0	NA	"intron (NR_037599, intron 12 of 13)"	"intron (NR_037599, intron 12 of 13)"	-4792	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr5.79942100.+	chr5	79942100	79942101	+	0	NA	"intron (NM_000791, intron 3 of 5)"	AluSg|SINE|Alu	4754	NM_001190470	100462981	Hs.666077	NM_001190470		MTRNR2L2	HN2	MT-RNR2-like 2	protein-coding
chr10.45240314.-	chr10	45240314	45240315	-	0	NA	Intergenic	AluSx1|SINE|Alu	166450	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr7.157451867.+	chr7	157451867	157451868	+	0	NA	"intron (NM_130842, intron 12 of 21)"	"intron (NM_130842, intron 12 of 21)"	-84753	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr20.62512954.-	chr20	62512954	62512955	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13501	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr18.55445719.+	chr18	55445719	55445720	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24608	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr2.38763488.-	chr2	38763488	38763489	-	0	NA	Intergenic	CpG	-66690	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr3.1900246.-	chr3	1900246	1900247	-	0	NA	Intergenic	AluSp|SINE|Alu	240304	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr4.177146901.+	chr4	177146901	177146902	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30079	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr4.1358110.-	chr4	1358110	1358111	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17006	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr3.57639933.-	chr3	57639933	57639934	-	0	NA	"intron (NM_152678, intron 9 of 19)"	AluY|SINE|Alu	-38883	NM_152678	201627	Hs.91085	NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN/MADD domain containing 6A	protein-coding
chr1.2887367.-	chr1	2887367	2887368	-	0	NA	Intergenic	Intergenic	50679	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr5.175831732.-	chr5	175831732	175831733	-	0	NA	"intron (NM_007097, intron 2 of 5)"	"intron (NM_007097, intron 2 of 5)"	-11838	NM_001834	1212	Hs.484241	NM_001834	ENSG00000175416	CLTB	LCB	"clathrin, light chain B"	protein-coding
chr3.22099196.-	chr3	22099196	22099197	-	0	NA	Intergenic	AluSx|SINE|Alu	306380	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr1.54839924.-	chr1	54839924	54839925	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32055	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr8.6644892.+	chr8	6644892	6644893	+	0	NA	Intergenic	AluY|SINE|Alu	-42131	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr10.104255181.-	chr10	104255181	104255182	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7331	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr12.96314630.+	chr12	96314630	96314631	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21798	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr9.8857457.+	chr9	8857457	8857458	+	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	-123511	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr19.589039.-	chr19	589039	589040	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	854	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr21.38403702.+	chr21	38403702	38403703	+	0	NA	Intergenic	AluJb|SINE|Alu	24839	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	DSCR6	RIPPLY3	Down syndrome critical region gene 6	protein-coding
chr22.17043802.-	chr22	17043802	17043803	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-29898	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	"chaperonin containing TCP1, subunit 8 (theta)-like 2"	protein-coding
chr5.178287385.-	chr5	178287385	178287386	-	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	-431	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr5.32208866.+	chr5	32208866	32208867	+	0	NA	Intergenic	SVA_F|Other|Other	-34441	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
chr3.47744681.+	chr3	47744681	47744682	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78724	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr19.49186314.-	chr19	49186314	49186315	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10050	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr7.3828935.-	chr7	3828935	3828936	-	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	340382	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr8.38592274.-	chr8	38592274	38592275	-	0	NA	"intron (NM_001146216, intron 1 of 12)"	"intron (NM_001146216, intron 1 of 12)"	-6570	NM_001146216	6867	Hs.279245	NM_001122824	ENSG00000147526	TACC1	Ga55	"transforming, acidic coiled-coil containing protein 1"	protein-coding
chr1.103215036.-	chr1	103215036	103215037	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	-359016	NM_080630	1301	Hs.523446	NM_001190709	ENSG00000060718	COL11A1	CO11A1|COLL6|STL2	"collagen, type XI, alpha 1"	protein-coding
chr19.19410445.+	chr19	19410445	19410446	+	0	NA	"intron (NM_172231, intron 7 of 13)"	AluY|SINE|Alu	20876	NM_172231	57794	Hs.515274	NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G patch domain containing 1	protein-coding
chr17.73625233.+	chr17	73625233	73625234	+	0	NA	"exon (NM_004259, exon 16 of 20)"	"exon (NM_004259, exon 16 of 20)"	-4281	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr17.71390395.+	chr17	71390395	71390396	+	0	NA	"exon (NM_001144952, exon 26 of 45)"	"exon (NM_001144952, exon 26 of 45)"	-82252	NM_012121	23580	Hs.3903	NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
chr9.133922869.+	chr9	133922869	133922870	+	0	NA	"intron (NM_006059, intron 8 of 27)"	Charlie1b|DNA|hAT-Charlie	38365	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	"laminin, gamma 3"	protein-coding
chr17.25676738.-	chr17	25676738	25676739	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55632	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr20.13660735.-	chr20	13660735	13660736	-	0	NA	Intergenic	AluY|SINE|Alu	41152	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr6.125475710.+	chr6	125475710	125475711	+	0	NA	"intron (NM_001003395, intron 1 of 6)"	CpG	290	NM_001003395	7164	Hs.591347	NM_001003395	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
chr6.36628757.-	chr6	36628757	36628758	-	0	NA	Intergenic	CpG	15480	NM_001220777	1026	Hs.732576	NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	"cyclin-dependent kinase inhibitor 1A (p21, Cip1)"	protein-coding
chr4.186162072.-	chr4	186162072	186162073	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30788	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr5.675309.-	chr5	675309	675310	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18201	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr1.156424836.+	chr1	156424836	156424837	+	0	NA	Intergenic	AluJb|SINE|Alu	-25652	NM_006365	10485	Hs.380027	NM_006365	ENSG00000125462	C1orf61	CROC4	chromosome 1 open reading frame 61	protein-coding
chr20.31414377.-	chr20	31414377	31414378	-	0	NA	"intron (NM_012325, intron 2 of 6)"	AluSz|SINE|Alu	-6678	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	"microtubule-associated protein, RP/EB family, member 1"	protein-coding
chr17.4453836.+	chr17	4453836	4453837	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4845	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr18.47013374.-	chr18	47013374	47013375	-	0	NA	promoter-TSS (NR_031720)	promoter-TSS (NR_031720)	-270	NM_001035005	497661	Hs.603040	NM_001035005		C18orf32	-	chromosome 18 open reading frame 32	protein-coding
chr19.53235293.+	chr19	53235293	53235294	+	0	NA	"intron (NM_001161499, intron 1 of 5)"	AluY|SINE|Alu	-2158	NM_030972	81856	Hs.143951	NM_001161499	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
chr3.188566611.+	chr3	188566611	188566612	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323152	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr17.13504199.-	chr17	13504199	13504200	-	0	NA	"exon (NM_006042, exon 1 of 2)"	"exon (NM_006042, exon 1 of 2)"	-1045	NM_006042	9955	Hs.462270	NM_006042	ENSG00000153976	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
chr1.6132090.+	chr1	6132090	6132091	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25916	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr18.68166780.+	chr18	68166780	68166781	+	0	NA	Intergenic	Intergenic	210643	NM_004232	9306	Hs.44439	NM_004232	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
chr2.25390978.+	chr2	25390978	25390979	+	0	NA	"intron (NM_001035256, intron 1 of 3)"	AluSp|SINE|Alu	581	NM_000939	5443	Hs.1897	NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
chr2.55960211.+	chr2	55960211	55960212	+	0	NA	Intergenic	Intergenic	-39166	NM_033109	87178	Hs.388733	NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
chr10.76198246.-	chr10	76198246	76198247	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-261999	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr13.43148399.+	chr13	43148399	43148400	+	0	NA	"5' UTR (NM_003701, exon 1 of 5)"	"5' UTR (NM_003701, exon 1 of 5)"	108	NM_003701	8600	Hs.333791	NM_003701	ENSG00000120659	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TRANCE|hRANKL2|sOdf	"tumor necrosis factor (ligand) superfamily, member 11"	protein-coding
chr10.134216493.+	chr10	134216493	134216494	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5791	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr16.4823709.-	chr16	4823709	4823710	-	0	NA	Intergenic	AluSq2|SINE|Alu	6543	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr19.55880892.+	chr19	55880892	55880893	+	0	NA	"intron (NM_000641, intron 1 of 4)"	CpG	939	NM_001267718	3589	Hs.467304	NM_000641	ENSG00000095752	IL11	AGIF|IL-11	interleukin 11	protein-coding
chr15.75701802.+	chr15	75701802	75701803	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	"intron (NM_001145357, intron 8 of 20)"	-40834	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr9.16748451.-	chr9	16748451	16748452	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122335	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr9.130734343.-	chr9	130734343	130734344	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8469	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr19.53979653.-	chr19	53979653	53979654	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8664	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr15.63229229.-	chr15	63229229	63229230	-	0	NA	Intergenic	AluSp|SINE|Alu	105609	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr5.65936258.+	chr5	65936258	65936259	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44082	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr15.30396204.-	chr15	30396204	30396205	-	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	-269	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr16.3203787.+	chr16	3203787	3203788	+	0	NA	Intergenic	AluSg|SINE|Alu	18653	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr11.777251.+	chr11	777251	777252	+	0	NA	"intron (NM_182612, intron 1 of 7)"	CpG	236	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr17.40536650.-	chr17	40536650	40536651	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3755	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr7.936465.+	chr7	936465	936466	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20274	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr9.77401550.-	chr9	77401550	77401551	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100713	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr12.38547774.+	chr12	38547774	38547775	+	0	NA	Intergenic	GSATX|Satellite|centr	-162783	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr5.89746450.+	chr5	89746450	89746451	+	0	NA	Intergenic	AluSp|SINE|Alu	24135	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr4.123063292.-	chr4	123063292	123063293	-	0	NA	Intergenic	AluSg7|SINE|Alu	28466	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chrX.13062342.+	chrX	13062342	13062343	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	575	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr6.108315375.+	chr6	108315375	108315376	+	0	NA	Intergenic	AluSz|SINE|Alu	-35893	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr16.544894.-	chr16	544894	544895	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20044	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr17.75136427.-	chr17	75136427	75136428	-	0	NA	promoter-TSS (NM_001143998)	promoter-TSS (NM_001143998)	578	NM_001039573	6397	Hs.464184	NM_001039573	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
chr2.136403858.+	chr2	136403858	136403859	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19109	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr3.46759247.-	chr3	46759247	46759248	-	0	NA	"exon (NM_013270, exon 1 of 6)"	"exon (NM_013270, exon 1 of 6)"	-126	NM_013270	29122	Hs.120365	NM_013270	ENSG00000206549	PRSS50	CT20|TSP50	"protease, serine, 50"	protein-coding
chr1.171662955.+	chr1	171662955	171662956	+	0	NA	Intergenic	SVA_C|Other|Other	-41182	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr3.13876342.+	chr3	13876342	13876343	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45276	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr11.100596536.+	chr11	100596536	100596537	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38129	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr3.49756703.-	chr3	49756703	49756704	-	0	NA	"exon (NM_198722, exon 1 of 1)"	"exon (NM_198722, exon 1 of 1)"	-535	NM_198722	386724	Hs.567903	NM_198722	ENSG00000176020	AMIGO3	AMIGO-3	adhesion molecule with Ig-like domain 3	protein-coding
chr10.134067682.-	chr10	134067682	134067683	-	0	NA	"intron (NM_173575, intron 1 of 11)"	AluY|SINE|Alu	-53795	NM_173575	282974	Hs.469002	NM_173575	ENSG00000165752	STK32C	PKE|RP11-140A10.1|YANK3	serine/threonine kinase 32C	protein-coding
chrX.132930091.-	chrX	132930091	132930092	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189582	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr11.65244867.+	chr11	65244867	65244868	+	0	NA	Intergenic	CpG	-20366	NR_002819	378938	Hs.621695	NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	miscRNA
chr3.50701716.+	chr3	50701716	50701717	+	0	NA	Intergenic	AluY|SINE|Alu	-10795	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr10.32358137.-	chr10	32358137	32358138	-	0	NA	Intergenic	AluSg7|SINE|Alu	12766	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr19.39475277.+	chr19	39475277	39475278	+	0	NA	Intergenic	AluSz|SINE|Alu	-8897	NM_024907	115290	Hs.531770	NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
chr20.39978490.-	chr20	39978490	39978491	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8930	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr16.77246829.-	chr16	77246829	77246830	-	0	NA	"3' UTR (NM_001129979, exon 11 of 11)"	"3' UTR (NM_001129979, exon 11 of 11)"	-13480	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr13.111268311.-	chr13	111268311	111268312	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-380	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr17.46186922.-	chr17	46186922	46186923	-	0	NA	"intron (NM_013323, intron 1 of 6)"	"intron (NM_013323, intron 1 of 6)"	-1975	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr18.14147136.-	chr18	14147136	14147137	-	0	NA	Intergenic	Intergenic	14647	NR_033354	162655	Hs.352635	NM_145287		ZNF519	HsT2362	zinc finger protein 519	protein-coding
chr11.86869663.-	chr11	86869663	86869664	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-120777	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr22.17043806.-	chr22	17043806	17043807	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-29894	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	"chaperonin containing TCP1, subunit 8 (theta)-like 2"	protein-coding
chr2.91847505.-	chr2	91847505	91847506	-	0	NA	"intron (NR_027238, intron 1 of 3)"	"intron (NR_027238, intron 1 of 3)"	-470	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr9.11599695.+	chr9	11599695	11599696	+	0	NA	Intergenic	AluY|SINE|Alu	-986972	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.8021820.-	chr1	8021820	8021821	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-106	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr7.157129502.+	chr7	157129502	157129503	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-208	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr3.183450123.+	chr3	183450123	183450124	+	0	NA	"intron (NM_018023, intron 7 of 30)"	AluSx3|SINE|Alu	34517	NM_018023	55689	Hs.632575	NM_018023	ENSG00000163872	YEATS2	-	YEATS domain containing 2	protein-coding
chr16.67063561.-	chr16	67063561	67063562	-	0	NA	"intron (NM_022845, intron 1 of 5)"	CpG	-511	NM_022845	865	Hs.460988	NM_001755	ENSG00000067955	CBFB	PEBP2B	"core-binding factor, beta subunit"	protein-coding
chr16.33293946.-	chr16	33293946	33293947	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4756	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr2.240371818.-	chr2	240371818	240371819	-	0	NA	Intergenic	SVA_D|Other|Other	49175	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr2.233367888.+	chr2	233367888	233367889	+	0	NA	Intergenic	CpG	-15356	NM_004826	9427	Hs.26880	NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme-like 1	protein-coding
chr16.68823734.-	chr16	68823734	68823735	-	0	NA	"intron (NM_004360, intron 2 of 15)"	AluSp|SINE|Alu	-52539	NM_004360	999	Hs.461086	NM_004360	ENSG00000039068	CDH1	Arc-1|CD324|CDHE|ECAD|LCAM|UVO	"cadherin 1, type 1, E-cadherin (epithelial)"	protein-coding
chr18.24748317.-	chr18	24748317	24748318	-	0	NA	"intron (NM_001256316, intron 1 of 4)"	AluY|SINE|Alu	-16985	NM_001256316	83539	Hs.706552	NM_001256316	ENSG00000154080	CHST9	GALNAC4ST-2	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chr4.163164038.-	chr4	163164038	163164039	-	0	NA	Intergenic	AluY|SINE|Alu	78852	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr7.627671.+	chr7	627671	627672	+	0	NA	"intron (NM_002735, intron 7 of 10)"	"intron (NM_002735, intron 7 of 10)"	67643	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr22.51001385.+	chr22	51001385	51001386	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-57	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr12.8057435.+	chr12	8057435	8057436	+	0	NA	Intergenic	AluSg7|SINE|Alu	31457	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr2.239047350.-	chr2	239047350	239047351	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	13	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr5.172159003.-	chr5	172159003	172159004	-	0	NA	Intergenic	Intergenic	-39200	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
chrX.153095487.+	chrX	153095487	153095488	+	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	516	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr1.10551177.+	chr1	10551177	10551178	+	0	NA	"intron (NM_004565, intron 1 of 8)"	AluSx|SINE|Alu	16174	NM_004565	5195	Hs.149983	NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
chr12.132116776.+	chr12	132116776	132116777	+	0	NA	Intergenic	L1ME1|LINE|L1	-78856	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr12.128310553.-	chr12	128310553	128310554	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	55609	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr4.69917187.+	chr4	69917187	69917188	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-31074	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr20.62127650.-	chr20	62127650	62127651	-	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	-3018	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr8.126398081.+	chr8	126398081	126398082	+	0	NA	Intergenic	Intergenic	-44482	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr4.8332095.+	chr4	8332095	8332096	+	0	NA	Intergenic	Intergenic	60606	NM_053044	94031	Hs.479119	NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
chr10.133203424.-	chr10	133203424	133203425	-	0	NA	Intergenic	Intergenic	93440	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr12.123903577.-	chr12	123903577	123903578	-	0	NA	"intron (NM_145058, intron 3 of 3)"	AluY|SINE|Alu	-17687	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr2.224599740.-	chr2	224599740	224599741	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102579	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr12.48975191.+	chr12	48975191	48975192	+	0	NA	Intergenic	AluSx|SINE|Alu	-11362	NM_002289	3906	Hs.72938	NM_002289	ENSG00000167531	LALBA	-	"lactalbumin, alpha-"	protein-coding
chr14.77743544.+	chr14	77743544	77743545	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5889	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr13.96681138.-	chr13	96681138	96681139	-	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	-24598	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr17.6879220.-	chr17	6879220	6879221	-	0	NA	Intergenic	AluSp|SINE|Alu	20164	NM_000697	239	Hs.654431	NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase	protein-coding
chr8.60674603.-	chr8	60674603	60674604	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519351	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr3.158905791.+	chr3	158905791	158905792	+	0	NA	"intron (NM_001197114, intron 1 of 9)"	"intron (NM_001197114, intron 1 of 9)"	-85245	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr5.36143017.+	chr5	36143017	36143018	+	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	5073	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr6.13335730.-	chr6	13335730	13335731	-	0	NA	Intergenic	AluYa5|SINE|Alu	6943	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr9.8858141.+	chr9	8858141	8858142	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124195	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr15.100080043.-	chr15	100080043	100080044	-	0	NA	Intergenic	AluSq2|SINE|Alu	26090	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr5.1021829.-	chr5	1021829	1021830	-	0	NA	"intron (NM_001271082, intron 3 of 10)"	"intron (NM_001271082, intron 3 of 10)"	-12752	NM_001271082	85409	Hs.240951	NM_001271082	ENSG00000145506	NKD2	Naked2	naked cuticle homolog 2 (Drosophila)	protein-coding
chr9.135013595.-	chr9	135013595	135013596	-	0	NA	Intergenic	AluSz|SINE|Alu	23739	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr21.45243637.-	chr21	45243637	45243638	-	0	NA	Intergenic	Intergenic	11189	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr20.61993529.-	chr20	61993529	61993530	-	0	NA	promoter-TSS (NM_000744)	promoter-TSS (NM_000744)	781	NM_001256573	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr4.123063304.-	chr4	123063304	123063305	-	0	NA	Intergenic	AluSg7|SINE|Alu	28454	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr9.120507368.+	chr9	120507368	120507369	+	0	NA	Intergenic	CpG	40915	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr18.46969462.+	chr18	46969462	46969463	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17617	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr2.176679066.-	chr2	176679066	176679067	-	0	NA	Intergenic	Intergenic	-187952	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|Ul|ulnaless	KIAA1715	protein-coding
chr20.33005200.+	chr20	33005200	33005201	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSp|SINE|Alu	-48930	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr3.151987778.+	chr3	151987778	151987779	+	0	NA	promoter-TSS (NR_027037)	promoter-TSS (NR_027037)	-363	NR_027037	401093	Hs.725347	NR_027037		MBNL1-AS1	-	MBNL1 antisense RNA 1	miscRNA
chr19.27731966.-	chr19	27731966	27731967	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-552882	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr20.52362431.-	chr20	52362431	52362432	-	0	NA	Intergenic	AluSx|SINE|Alu	-129817	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chrX.137770407.+	chrX	137770407	137770408	+	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	-20453	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr21.45684318.+	chr21	45684318	45684319	+	0	NA	Intergenic	AluY|SINE|Alu	-2219	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chrX.133976869.+	chrX	133976869	133976870	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35646	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr14.21741103.-	chr14	21741103	21741104	-	0	NA	Intergenic	AluSx1|SINE|Alu	3465	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr8.30590317.+	chr8	30590317	30590318	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4831	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr19.34623418.+	chr19	34623418	34623419	+	0	NA	Intergenic	SVA_D|Other|Other	-39934	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chrX.112187626.-	chrX	112187626	112187627	-	0	NA	Intergenic	AluY|SINE|Alu	103583	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr7.1547595.+	chr7	1547595	1547596	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3577	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr10.69822235.+	chr10	69822235	69822236	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12868	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr18.63211155.+	chr18	63211155	63211156	+	0	NA	Intergenic	AluY|SINE|Alu	-206333	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr16.31470584.-	chr16	31470584	31470585	-	0	NA	"5' UTR (NM_001105247, exon 1 of 6)"	"5' UTR (NM_001105247, exon 1 of 6)"	-267	NM_024742	79798	Hs.732945	NM_001105247	ENSG00000140691	ARMC5	-	armadillo repeat containing 5	protein-coding
chr5.92346164.-	chr5	92346164	92346165	-	0	NA	Intergenic	AluSq2|SINE|Alu	-560335	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr9.127626450.-	chr9	127626450	127626451	-	0	NA	Intergenic	Intergenic	2210	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr2.177027789.-	chr2	177027789	177027790	-	0	NA	Intergenic	CpG	1016	NM_006898	3232	Hs.93574	NM_006898		HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
chr17.56832215.+	chr17	56832215	56832216	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1015	NM_014906	22843	Hs.245044	NM_014906		PPM1E	CaMKP-N|POPX1|PP2CH|caMKN	"protein phosphatase, Mg2+/Mn2+ dependent, 1E"	protein-coding
chrX.56406813.-	chrX	56406813	56406814	-	0	NA	Intergenic	SVA_C|Other|Other	-147943	NM_001159296	11279	Hs.646614	NM_001159296	ENSG00000102349	KLF8	BKLF3|ZNF741	Kruppel-like factor 8	protein-coding
chr2.173941031.+	chr2	173941031	173941032	+	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	466	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr14.103988572.-	chr14	103988572	103988573	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-624	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr2.20548612.-	chr2	20548612	20548613	-	0	NA	Intergenic	AluJb|SINE|Alu	21468	NM_015317	23369	Hs.467824	NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio homolog 2 (Drosophila)	protein-coding
chr17.37701010.-	chr17	37701010	37701011	-	0	NA	Intergenic	AluSp|SINE|Alu	-63165	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr16.31932509.-	chr16	31932509	31932510	-	0	NA	Intergenic	AluY|SINE|Alu	-47430	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr16.73461727.-	chr16	73461727	73461728	-	0	NA	Intergenic	AluSg|SINE|Alu	-41023	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr6.65337789.+	chr6	65337789	65337790	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673522	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr6.3127006.-	chr6	3127006	3127007	-	0	NA	"intron (NR_026648, intron 3 of 8)"	AluSx|SINE|Alu	-8080	NM_004332	670	Hs.10136	NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase-like (serine hydrolase)	protein-coding
chr16.89608200.+	chr16	89608200	89608201	+	0	NA	"intron (NM_003119, intron 9 of 16)"	"intron (NM_003119, intron 9 of 16)"	-18865	NM_001243131	6137	Hs.410817	NM_000977		RPL13	BBC1|D16S444E|D16S44E|L13	ribosomal protein L13	protein-coding
chr8.141559335.+	chr8	141559335	141559336	+	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	37254	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr3.185541177.-	chr3	185541177	185541178	-	0	NA	"intron (NM_006548, intron 1 of 15)"	CpG	-1650	NM_006548	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr7.495571.-	chr7	495571	495572	-	0	NA	Intergenic	CpG	-63910	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr12.75694250.-	chr12	75694250	75694251	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29586	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr9.131293119.+	chr9	131293119	131293120	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21718	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr19.4141915.-	chr19	4141915	4141916	-	0	NA	Intergenic	AluY|SINE|Alu	11683	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr2.47661307.-	chr2	47661307	47661308	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31101	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr21.19065801.-	chr21	19065801	19065802	-	0	NA	Intergenic	AluY|SINE|Alu	80533	NM_001130914	10950	Hs.473420	NM_001130914	ENSG00000154640	BTG3	ANA|TOB5|TOB55|TOFA	"BTG family, member 3"	protein-coding
chr12.131551515.-	chr12	131551515	131551516	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98041	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chrX.88129155.+	chrX	88129155	88129156	+	0	NA	Intergenic	AluY|SINE|Alu	126929	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr2.202898614.-	chr2	202898614	202898615	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	696	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr2.48010475.+	chr2	48010475	48010476	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	254	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr3.193486638.-	chr3	193486638	193486639	-	0	NA	Intergenic	AluY|SINE|Alu	141517	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	miscRNA
chr7.1149758.-	chr7	1149758	1149759	-	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	-22035	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr17.35296113.-	chr17	35296113	35296114	-	0	NA	"intron (NM_005568, intron 1 of 4)"	CpG-10485	-1341	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr6.143226999.-	chr6	143226999	143227000	-	0	NA	"intron (NM_006734, intron 1 of 9)"	AluSz6|SINE|Alu	-39339	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chr5.115953565.-	chr5	115953565	115953566	-	0	NA	Intergenic	AluY|SINE|Alu	43014	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr4.118425584.+	chr4	118425584	118425585	+	0	NA	Intergenic	AluY|SINE|Alu	-418848	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr2.32250852.-	chr2	32250852	32250853	-	0	NA	"intron (NM_032574, intron 4 of 4)"	"intron (NM_032574, intron 4 of 4)"	-13992	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chrM.795.+	chrM	795	796	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.236252201.-	chr1	236252201	236252202	-	0	NA	Intergenic	AluY|SINE|Alu	23720	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr16.33293940.+	chr16	33293940	33293941	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4762	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr6.55774917.-	chr6	55774917	55774918	-	0	NA	Intergenic	SVA_D|Other|Other	34542	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr8.113085591.+	chr8	113085591	113085592	+	0	NA	Intergenic	AluYb8|SINE|Alu	-570131	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	miscRNA
chr1.79749351.-	chr1	79749351	79749352	-	0	NA	Intergenic	AluSx|SINE|Alu	276856	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr12.112123609.-	chr12	112123609	112123610	-	0	NA	promoter-TSS (NM_001136538)	promoter-TSS (NM_001136538)	-181	NM_006768	8315	Hs.530940	NM_006768		BRAP	BRAP2|IMP|RNF52	BRCA1 associated protein	protein-coding
chr6.46742393.-	chr6	46742393	46742394	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18701	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr15.72816606.-	chr15	72816606	72816607	-	0	NA	"intron (NM_005744, intron 2 of 13)"	AluSz|SINE|Alu	-49939	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	"ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)"	protein-coding
chr6.126100197.+	chr6	126100197	126100198	+	0	NA	Intergenic	AluY|SINE|Alu	-2110	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr17.37570983.+	chr17	37570983	37570984	+	0	NA	"intron (NM_004774, intron 16 of 16)"	AluSc|SINE|Alu	-13074	NM_032875	84961	Hs.462946	NM_001184906		FBXL20	Fbl2|Fbl20	F-box and leucine-rich repeat protein 20	protein-coding
chr1.59938086.+	chr1	59938086	59938087	+	0	NA	"intron (NM_018291, intron 6 of 15)"	LTR12C|LTR|ERV1	162336	NM_001244714	55277	Hs.444301	NM_001113411	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
chr17.40576570.-	chr17	40576570	40576571	-	0	NA	Intergenic	AluSx|SINE|Alu	1232	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
chr19.50614562.-	chr19	50614562	50614563	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1183	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr22.47447404.-	chr22	47447404	47447405	-	0	NA	"intron (NM_014346, intron 11 of 12)"	"intron (NM_014346, intron 11 of 12)"	-288886	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr16.33293950.-	chr16	33293950	33293951	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4752	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr1.158012626.+	chr1	158012626	158012627	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49563	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr16.4028589.-	chr16	4028589	4028590	-	0	NA	"intron (NM_001116, intron 8 of 10)"	"intron (NM_001116, intron 8 of 10)"	98468	NM_004380	1387	Hs.459759	NM_001079846	ENSG00000005339	CREBBP	CBP|KAT3A|RSTS	CREB binding protein	protein-coding
chr15.50450614.+	chr15	50450614	50450615	+	0	NA	Intergenic	SVA_D|Other|Other	-23779	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	"solute carrier family 27 (fatty acid transporter), member 2"	protein-coding
chrX.78605622.-	chrX	78605622	78605623	-	0	NA	Intergenic	AluSx1|SINE|Alu	-17427	NM_004867	9452	Hs.17109	NM_001171581	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
chr3.190040218.-	chr3	190040218	190040219	-	0	NA	promoter-TSS (NM_021101)	promoter-TSS (NM_021101)	-17	NM_021101	9076	Hs.439060	NM_021101	ENSG00000163347	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
chr9.108210413.-	chr9	108210413	108210414	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-88	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr1.28895955.+	chr1	28895955	28895956	+	0	NA	"intron (NM_017846, intron 6 of 8)"	AluY|SINE|Alu	9379	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	"small nucleolar RNA, C/D box 99"	snoRNA
chr8.22864984.-	chr8	22864984	22864985	-	0	NA	"exon (NM_001160036, exon 7 of 12)"	"exon (NM_001160036, exon 7 of 12)"	-7892	NM_015178	23221	Hs.372688	NM_001160036	ENSG00000008853	RHOBTB2	DBC2	Rho-related BTB domain containing 2	protein-coding
chr16.632117.-	chr16	632117	632118	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7240	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr19.17277132.-	chr19	17277132	17277133	-	0	NA	"intron (NM_004145, intron 10 of 39)"	AluSx|SINE|Alu	49023	NM_018467	55850	Hs.16187	NM_018467	ENSG00000053501	USE1	P31|SLT1	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding
chr2.202046048.+	chr2	202046048	202046049	+	0	NA	Intergenic	AluSz|SINE|Alu	-1573	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr19.2187834.-	chr19	2187834	2187835	-	0	NA	"intron (NM_032482, intron 3 of 27)"	AluY|SINE|Alu	-23686	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr19.1989817.-	chr19	1989817	1989818	-	0	NA	"intron (NM_017797, intron 5 of 8)"	"intron (NM_017797, intron 5 of 8)"	-25885	NM_017797	55643	Hs.465543	NM_017797	ENSG00000133243	BTBD2	-	BTB (POZ) domain containing 2	protein-coding
chr18.11959899.-	chr18	11959899	11959900	-	0	NA	Intergenic	SVA_D|Other|Other	21528	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr12.53235094.+	chr12	53235094	53235095	+	0	NA	"intron (NM_173352, intron 6 of 8)"	AluSc8|SINE|Alu	-7017	NM_175834	338785	Hs.711471	NM_175834	ENSG00000185640	KRT79	K6L|KRT6L	keratin 79	protein-coding
chr12.132372603.-	chr12	132372603	132372604	-	0	NA	Intergenic	AluSx|SINE|Alu	6676	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr6.170055432.-	chr6	170055432	170055433	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46727	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr12.129892216.-	chr12	129892216	129892217	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-495996	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr20.33062685.-	chr20	33062685	33062686	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8555	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr5.78890145.-	chr5	78890145	78890146	-	0	NA	Intergenic	AluY|SINE|Alu	18098	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr10.35559814.+	chr10	35559814	35559815	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23861	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr1.41976534.+	chr1	41976534	41976535	+	0	NA	"exon (NM_024503, exon 9 of 9)"	"exon (NM_024503, exon 9 of 9)"	-26190	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr1.242294512.+	chr1	242294512	242294513	+	0	NA	"intron (NM_152666, intron 6 of 10)"	AluSc|SINE|Alu	-132127	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr16.87903508.+	chr16	87903508	87903509	+	0	NA	promoter-TSS (NM_003486)	promoter-TSS (NM_003486)	-408	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr10.47621267.-	chr10	47621267	47621268	-	0	NA	Intergenic	Intergenic	125653	NM_001630	244	Hs.705389	NM_001630	ENSG00000186807	ANXA8L2	ANXA8|bA145E20.2	annexin A8-like 2	protein-coding
chr19.45660335.+	chr19	45660335	45660336	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3073	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chrX.112142841.-	chrX	112142841	112142842	-	0	NA	Intergenic	AluY|SINE|Alu	58798	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr12.11974596.+	chr12	11974596	11974597	+	0	NA	"intron (NR_046487, intron 1 of 3)"	AluJr|SINE|Alu	104511	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19	-	"RNA, U6 small nuclear 19"	snRNA
chr16.31932457.+	chr16	31932457	31932458	+	0	NA	Intergenic	MER67C|LTR|ERV1	47378	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr4.77348135.+	chr4	77348135	77348136	+	0	NA	Intergenic	AluY|SINE|Alu	-8118	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr17.48631013.-	chr17	48631013	48631014	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6563	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr11.83150013.+	chr11	83150013	83150014	+	0	NA	Intergenic	AluSx|SINE|Alu	-152636	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr19.22949456.-	chr19	22949456	22949457	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	-17517	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr7.1001919.+	chr7	1001919	1001920	+	0	NA	Intergenic	Intergenic	-7630	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr9.719229.-	chr9	719229	719230	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12423	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr22.42813110.+	chr22	42813110	42813111	+	0	NA	"intron (NM_145912, intron 1 of 5)"	"intron (NM_145912, intron 1 of 5)"	15291	NM_145912	150372	Hs.436677	NM_145912	ENSG00000235568	NFAM1	CNAIP|bK126B4.4	NFAT activating protein with ITAM motif 1	protein-coding
chr14.23517087.-	chr14	23517087	23517088	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5711	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr1.32122083.+	chr1	32122083	32122084	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11245	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr22.17719106.+	chr22	17719106	17719107	+	0	NA	Intergenic	AluSg|SINE|Alu	-28327	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chrX.13062335.+	chrX	13062335	13062336	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	582	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr19.3766783.-	chr19	3766783	3766784	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4118	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr7.592014.-	chr7	592014	592015	-	0	NA	"intron (NM_002735, intron 9 of 10)"	C-rich|Low_complexity|Low_complexity	-31986	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr3.192348601.+	chr3	192348601	192348602	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96787	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr8.30590290.+	chr8	30590290	30590291	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4804	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr1.243646576.-	chr1	243646576	243646577	-	0	NA	"intron (NM_006642, intron 16 of 17)"	CpG	-137098	NR_039824	100616343		NR_039824		MIR4677	-	microRNA 4677	miscRNA
chr13.113951534.-	chr13	113951534	113951535	-	0	NA	promoter-TSS (NM_005561)	promoter-TSS (NM_005561)	-65	NM_005561	3916	Hs.494419	NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal-associated membrane protein 1	protein-coding
chr8.142617969.+	chr8	142617969	142617970	+	0	NA	Intergenic	Intergenic	-100639	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr9.6807681.-	chr9	6807681	6807682	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50040	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr5.5953945.-	chr5	5953945	5953946	-	0	NA	Intergenic	Intergenic	-383460	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr16.75032893.+	chr16	75032893	75032894	+	0	NA	promoter-TSS (NM_032268)	promoter-TSS (NM_032268)	-22	NM_032268	84937	Hs.427284	NM_032268	ENSG00000186187	ZNRF1	NIN283	"zinc and ring finger 1, E3 ubiquitin protein ligase"	protein-coding
chrX.53111666.-	chrX	53111666	53111667	-	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	-124	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr13.111268087.+	chr13	111268087	111268088	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	156	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr20.19431529.+	chr20	19431529	19431530	+	0	NA	"intron (NM_020689, intron 2 of 16)"	AluSz|SINE|Alu	-166289	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	miscRNA
chr19.3613486.+	chr19	3613486	3613487	+	0	NA	"exon (NM_001080543, exon 8 of 10)"	"exon (NM_001080543, exon 8 of 10)"	6241	NR_038865	404665	Hs.719726	NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	miscRNA
chr10.33505158.+	chr10	33505158	33505159	+	0	NA	"intron (NR_045259, intron 7 of 15)"	AluY|SINE|Alu	118675	NM_001244972	8829	Hs.653996	NM_001024628	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
chr16.89269029.+	chr16	89269029	89269030	+	0	NA	Intergenic	L1MB5|LINE|L1	-2500	NM_001242757	146429	Hs.743726	NM_001242757		SLC22A31	-	"solute carrier family 22, member 31"	protein-coding
chr8.57359067.-	chr8	57359067	57359068	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-215	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr15.65625176.+	chr15	65625176	65625177	+	0	NA	"intron (NM_004884, intron 6 of 13)"	"intron (NM_004884, intron 6 of 13)"	45202	NM_004884	9543	Hs.128292	NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	"immunoglobulin superfamily, DCC subclass, member 3"	protein-coding
chr4.37548442.+	chr4	37548442	37548443	+	0	NA	"intron (NM_001104629, intron 1 of 3)"	HERVE_a-int|LTR|ERV1	-37413	NM_018302	55286	Hs.107527	NM_001104629		C4orf19	-	chromosome 4 open reading frame 19	protein-coding
chr19.8394130.-	chr19	8394130	8394131	-	0	NA	"intron (NM_198471, intron 7 of 10)"	AluSx|SINE|Alu	-7746	NM_001031	6234	Hs.740394	NM_001031		RPS28	S28	ribosomal protein S28	protein-coding
chr9.140333943.-	chr9	140333943	140333944	-	0	NA	"intron (NM_198585, intron 1 of 8)"	"intron (NM_198585, intron 1 of 8)"	-1958	NM_198585	377841	Hs.512562	NM_001033113	ENSG00000188833	ENTPD8	GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
chr16.544865.-	chr16	544865	544866	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20015	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr14.23262393.-	chr14	23262393	23262394	-	0	NA	"intron (NM_001126106, intron 3 of 10)"	AluY|SINE|Alu	-22708	NR_040448	9056	Hs.732349	NM_001126105	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	"solute carrier family 7 (amino acid transporter light chain, y+L system), member 7"	protein-coding
chr2.62741043.-	chr2	62741043	62741044	-	0	NA	Intergenic	AluY|SINE|Alu	7439	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr8.56758263.-	chr8	56758263	56758264	-	0	NA	Intergenic	AluSx3|SINE|Alu	34123	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr10.69822243.+	chr10	69822243	69822244	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12860	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr16.78282848.+	chr16	78282848	78282849	+	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	149521	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr7.104040170.-	chr7	104040170	104040171	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71066	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr16.70148589.+	chr16	70148589	70148590	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1060	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr6.37735713.-	chr6	37735713	37735714	-	0	NA	Intergenic	AluY|SINE|Alu	51594	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	"zinc finger, AN1-type domain 3"	protein-coding
chr1.151573461.-	chr1	151573461	151573462	-	0	NA	Intergenic	SVA_E|Other|Other	11201	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr7.100044652.+	chr7	100044652	100044653	+	0	NA	Intergenic	AluY|SINE|Alu	-10558	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr2.201607820.-	chr2	201607820	201607821	-	0	NA	"intron (NR_001557, intron 8 of 30)"	"intron (NR_001557, intron 8 of 30)"	7920	NR_037886	100507140	Hs.382116	NR_037886	ENSG00000237166	LOC100507140	-	uncharacterized LOC100507140	miscRNA
chr16.11293936.+	chr16	11293936	11293937	+	0	NA	Intergenic	AluSg7|SINE|Alu	56103	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
chr7.69745550.-	chr7	69745550	69745551	-	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	-681644	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr10.97383345.-	chr10	97383345	97383346	-	0	NA	"intron (NM_001017423, intron 11 of 17)"	AluSp|SINE|Alu	-33222	NM_001017423	5832	Hs.500645	NM_001017423	ENSG00000059573	ALDH18A1	ARCL3A|GSAS|P5CS|PYCS	"aldehyde dehydrogenase 18 family, member A1"	protein-coding
chr11.68608808.+	chr11	68608808	68608809	+	0	NA	"intron (NM_001031847, intron 1 of 18)"	CpG	591	NM_001876	1374	Hs.503043	NM_001031847	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A (liver)	protein-coding
chr2.240980311.-	chr2	240980311	240980312	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2088	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr1.218195546.+	chr1	218195546	218195547	+	0	NA	Intergenic	AluY|SINE|Alu	129304	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr1.163468379.+	chr1	163468379	163468380	+	0	NA	Intergenic	SVA_A|Other|Other	176656	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr2.20850356.+	chr2	20850356	20850357	+	0	NA	"intron (NM_022460, intron 1 of 6)"	L2b|LINE|L2	508	NM_022460	64342	Hs.531785	NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
chr20.53506413.-	chr20	53506413	53506414	-	0	NA	Intergenic	AluY|SINE|Alu	-414147	NM_018431	55816	Hs.656582	NM_018431	ENSG00000101134	DOK5	C20orf180	docking protein 5	protein-coding
chr4.114652835.+	chr4	114652835	114652836	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30248	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr13.96742778.-	chr13	96742778	96742779	-	0	NA	promoter-TSS (NM_153456)	promoter-TSS (NM_153456)	315	NM_153456	266722	Hs.740393	XM_003846570		HS6ST3	HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
chr22.41215391.-	chr22	41215391	41215392	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	-1	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr11.73486304.+	chr11	73486304	73486305	+	0	NA	Intergenic	SVA_C|Other|Other	-12613	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr9.128842655.-	chr9	128842655	128842656	-	0	NA	Intergenic	LTR7|LTR|ERV1	246468	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr9.139922847.+	chr9	139922847	139922848	+	0	NA	promoter-TSS (NM_001606)	promoter-TSS (NM_001606)	-107	NM_001606	20	Hs.421202	NM_001606	ENSG00000107331	ABCA2	ABC2	"ATP-binding cassette, sub-family A (ABC1), member 2"	protein-coding
chr9.77401569.-	chr9	77401569	77401570	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100694	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr5.22207046.+	chr5	22207046	22207047	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64585	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr10.6985597.+	chr10	6985597	6985598	+	0	NA	Intergenic	AluSx1|SINE|Alu	164037	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chrX.42145040.-	chrX	42145040	42145041	-	0	NA	Intergenic	SVA_D|Other|Other	362753	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr19.46185060.-	chr19	46185060	46185061	-	0	NA	"exon (NM_000164, exon 14 of 14)"	"exon (NM_000164, exon 14 of 14)"	6794	NR_037512	100500845		NR_037512		MIR642B	-	microRNA 642b	miscRNA
chr18.8609330.+	chr18	8609330	8609331	+	0	NA	promoter-TSS (NM_001025300)	promoter-TSS (NM_001025300)	-113	NM_001025300	201475	Hs.270074	NM_001025300	ENSG00000206418	RAB12	-	"RAB12, member RAS oncogene family"	protein-coding
chr6.160985702.-	chr6	160985702	160985703	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53546	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr16.656940.+	chr16	656940	656941	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	"intron (NM_001172663, intron 2 of 6)"	16767	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr12.9892336.-	chr12	9892336	9892337	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6441	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr11.3224519.+	chr11	3224519	3224520	+	0	NA	Intergenic	Intergenic	-15043	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr18.70912355.-	chr18	70912355	70912356	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19378	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr12.66636845.-	chr12	66636845	66636846	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53867	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr5.175224107.+	chr5	175224107	175224108	+	0	NA	"intron (NM_006650, intron 1 of 4)"	CpG	497	NM_006650	10814	Hs.193235	NM_001008220	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
chr12.113494400.+	chr12	113494400	113494401	+	0	NA	Intergenic	CpG	-1262	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr10.71044913.-	chr10	71044913	71044914	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15157	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr6.333809.+	chr6	333809	333810	+	0	NA	"intron (NM_020185, intron 3 of 7)"	"intron (NM_020185, intron 3 of 7)"	41708	NM_020185	56940	Hs.29106	NM_020185		DUSP22	JKAP|JSP1|LMWDSP2|MKPX|VHX	dual specificity phosphatase 22	protein-coding
chr17.78199821.-	chr17	78199821	78199822	-	0	NA	"intron (NM_173626, intron 6 of 17)"	MER5A1|DNA|hAT-Charlie	-5621	NM_001166347	284129	Hs.4866	NM_001166347	ENSG00000181045	SLC26A11	-	"solute carrier family 26, member 11"	protein-coding
chr9.86597305.-	chr9	86597305	86597306	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1668	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr5.128197068.-	chr5	128197068	128197069	-	0	NA	Intergenic	AluYk4|SINE|Alu	104142	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr19.14508389.-	chr19	14508389	14508390	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16433	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr16.30960894.-	chr16	30960894	30960895	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-489	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr22.17719096.+	chr22	17719096	17719097	+	0	NA	Intergenic	AluSg|SINE|Alu	-28317	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr8.100115811.+	chr8	100115811	100115812	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90317	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr9.100747351.+	chr9	100747351	100747352	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1862	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr5.172724957.-	chr5	172724957	172724958	-	0	NA	Intergenic	Intergenic	-31549	NM_003714	8614	Hs.233160	NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
chr12.49658922.+	chr12	49658922	49658923	+	0	NA	promoter-TSS (NM_032704)	promoter-TSS (NM_032704)	57	NM_032704	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	"tubulin, alpha 1c"	protein-coding
chr9.139077627.+	chr9	139077627	139077628	+	0	NA	Intergenic	Intergenic	17377	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr6.12041596.-	chr6	12041596	12041597	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28872	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr19.41868017.-	chr19	41868017	41868018	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1854	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr12.129892193.+	chr12	129892193	129892194	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496019	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr17.78888140.-	chr17	78888140	78888141	-	0	NA	"intron (NM_020761, intron 21 of 33)"	MER52A|LTR|ERV1	77501	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr13.29068602.+	chr13	29068602	29068603	+	0	NA	"intron (NM_001160030, intron 1 of 14)"	CpG	663	NM_001160031	2321	Hs.594454	NM_001159920	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms-related tyrosine kinase 1	protein-coding
chr11.101100736.+	chr11	101100736	101100737	+	0	NA	Intergenic	AluSx|SINE|Alu	-100192	NM_000926	5241	Hs.742403	NM_000926	ENSG00000082175	PGR	NR3C3|PR	progesterone receptor	protein-coding
chr6.55774912.-	chr6	55774912	55774913	-	0	NA	Intergenic	SVA_D|Other|Other	34537	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr4.714221.+	chr4	714221	714222	+	0	NA	"intron (NM_006315, intron 1 of 10)"	"intron (NM_006315, intron 1 of 10)"	14648	NM_006315	10336	Hs.731755	NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
chr9.6559763.+	chr9	6559763	6559764	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85929	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr2.239058251.+	chr2	239058251	239058252	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10888	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr11.64073387.+	chr11	64073387	64073388	+	0	NA	"intron (NM_004451, intron 1 of 6)"	CpG	343	NM_004451	2101	Hs.110849	NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen-related receptor alpha	protein-coding
chr11.114967399.+	chr11	114967399	114967400	+	0	NA	Intergenic	AluSz|SINE|Alu	407842	NM_014333	23705	Hs.370510	NM_001098517	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
chr17.20907502.-	chr17	20907502	20907503	-	0	NA	"intron (NM_015276, intron 12 of 12)"	"intron (NM_015276, intron 12 of 12)"	-38850	NM_015276	23326	Hs.462492	NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
chr9.138065717.+	chr9	138065717	138065718	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7738	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr11.66997265.+	chr11	66997265	66997266	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10241	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr2.58077677.-	chr2	58077677	58077678	-	0	NA	Intergenic	Intergenic	196100	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr15.43425871.+	chr15	43425871	43425872	+	0	NA	"5' UTR (NM_024956, exon 1 of 14)"	"5' UTR (NM_024956, exon 1 of 14)"	149	NM_024956	80021	Hs.511175	NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
chr15.83365812.+	chr15	83365812	83365813	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12823	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr5.1494531.-	chr5	1494531	1494532	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29545	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr11.74107055.-	chr11	74107055	74107056	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2447	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr13.66584757.-	chr13	66584757	66584758	-	0	NA	Intergenic	AluY|SINE|Alu	814544	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr5.472294.+	chr5	472294	472295	+	0	NA	"intron (NR_024158, intron 1 of 1)"	"intron (NR_024158, intron 1 of 1)"	786	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	miscRNA
chr7.150812732.-	chr7	150812732	150812733	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28906	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr14.95511439.-	chr14	95511439	95511440	-	0	NA	Intergenic	Intergenic	-88401	NM_001195573	23405	Hs.87889	NM_001195573	ENSG00000100697	DICER1	DCR1|Dicer|HERNA|MNG1	"dicer 1, ribonuclease type III"	protein-coding
chr13.110832798.+	chr13	110832798	110832799	+	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	126698	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chr9.34329782.-	chr9	34329782	34329783	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-278	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chrX.48975594.+	chrX	48975594	48975595	+	0	NA	"intron (NM_015698, intron 4 of 10)"	AluY|SINE|Alu	4485	NM_015698	27238	Hs.503666	NM_015698		GPKOW	GPATC5|GPATCH5|Spp2|T54	G patch domain and KOW motifs	protein-coding
chr14.105106569.+	chr14	105106569	105106570	+	0	NA	Intergenic	CpG	-35472	NM_207379	388021	Hs.655004	NM_207379		TMEM179	C14orf90|TMEM179A	transmembrane protein 179	protein-coding
chr8.43413774.-	chr8	43413774	43413775	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266189	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr18.73357741.-	chr18	73357741	73357742	-	0	NA	Intergenic	L2|LINE|L2	218152	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chrX.15336065.+	chrX	15336065	15336066	+	0	NA	Intergenic	AluY|SINE|Alu	-2319	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr7.130728479.-	chr7	130728479	130728480	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	-63310	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr5.2860464.-	chr5	2860464	2860465	-	0	NA	Intergenic	Intergenic	-108202	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr3.46792421.-	chr3	46792421	46792422	-	0	NA	Intergenic	CpG	6176	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr7.150812742.-	chr7	150812742	150812743	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28916	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr10.112860886.+	chr10	112860886	112860887	+	0	NA	Intergenic	MIRc|SINE|MIR	24096	NM_000681	150	Hs.249159	NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
chr1.114299541.+	chr1	114299541	114299542	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2236	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr21.45285546.-	chr21	45285546	45285547	-	0	NA	"intron (NM_020132, intron 1 of 9)"	"intron (NM_020132, intron 1 of 9)"	-430	NM_020132	56894	Hs.248785	NM_001037553	ENSG00000160216	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
chr10.104238462.-	chr10	104238462	104238463	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17292	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr2.30144479.-	chr2	30144479	30144480	-	0	NA	promoter-TSS (NM_004304)	promoter-TSS (NM_004304)	2	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr2.21484591.-	chr2	21484591	21484592	-	0	NA	Intergenic	Intergenic	217646	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr12.110327018.+	chr12	110327018	110327019	+	0	NA	Intergenic	AluY|SINE|Alu	-8725	NM_016433	51228	Hs.381256	NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
chr6.150921948.+	chr6	150921948	150921949	+	0	NA	"intron (NM_001029884, intron 1 of 16)"	CpG	949	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	"pleckstrin homology domain containing, family G (with RhoGef domain) member 1"	protein-coding
chr10.73848179.+	chr10	73848179	73848180	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	352	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr9.97487104.+	chr9	97487104	97487105	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-1847	NM_032823	84909	Hs.434253	NM_001193329	ENSG00000148120	C9orf3	AOPEP|AP-O|APO|C90RF3|ONPEP	chromosome 9 open reading frame 3	protein-coding
chr12.133328246.+	chr12	133328246	133328247	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10205	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr10.7626465.+	chr10	7626465	7626466	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35171	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr17.73161844.+	chr17	73161844	73161845	+	0	NA	Intergenic	AluY|SINE|Alu	-11069	NM_016185	51155	Hs.532803	NM_001002032	ENSG00000189159	HN1	ARM2|HN1A	hematological and neurological expressed 1	protein-coding
chr12.133141216.+	chr12	133141216	133141217	+	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	45821	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr12.104184471.-	chr12	104184471	104184472	-	0	NA	"intron (NM_001031701, intron 9 of 13)"	"intron (NM_001031701, intron 9 of 13)"	-50504	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
chr22.41715339.-	chr22	41715339	41715340	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17832	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr17.79430733.-	chr17	79430733	79430734	-	0	NA	"exon (NM_001080519, exon 27 of 27)"	"exon (NM_001080519, exon 27 of 27)"	12519	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr13.56400617.+	chr13	56400617	56400618	+	0	NA	Intergenic	AluY|SINE|Alu	652028	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr11.1484615.+	chr11	1484615	1484616	+	0	NA	TTS (NM_001256630)	TTS (NM_001256630)	23333	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr13.103088606.-	chr13	103088606	103088607	-	0	NA	Intergenic	AluY|SINE|Alu	34482	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr20.62108052.-	chr20	62108052	62108053	-	0	NA	Intergenic	AluSq2|SINE|Alu	4059	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chrX.53111566.-	chrX	53111566	53111567	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-24	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.100467831.+	chr5	100467831	100467832	+	0	NA	Intergenic	AluSx1|SINE|Alu	-228844	NM_005668	7903	Hs.308628	NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4"	protein-coding
chr3.126260582.+	chr3	126260582	126260583	+	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	17176	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr10.28651001.-	chr10	28651001	28651002	-	0	NA	Intergenic	AluY|SINE|Alu	79934	NM_173496	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	"membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)"	protein-coding
chr18.19172535.-	chr18	19172535	19172536	-	0	NA	"intron (NM_052911, intron 1 of 11)"	SVA_D|Other|Other	-8158	NM_052911	114799	Hs.464733	NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of cohesion 1 homolog 1 (S. cerevisiae)	protein-coding
chr10.133869141.+	chr10	133869141	133869142	+	0	NA	Intergenic	Intergenic	-49172	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr16.632250.-	chr16	632250	632251	-	0	NA	"exon (NM_004204, exon 10 of 11)"	"exon (NM_004204, exon 10 of 11)"	7107	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr11.86267671.+	chr11	86267671	86267672	+	0	NA	"exon (NM_001161586, exon 4 of 15)"	"exon (NM_001161586, exon 4 of 15)"	115569	NM_001014811	10873	Hs.199743	NM_001014811	ENSG00000151376	ME3	NADP-ME	"malic enzyme 3, NADP(+)-dependent, mitochondrial"	protein-coding
chr8.144513089.+	chr8	144513089	144513090	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-487	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr22.38336422.+	chr22	38336422	38336423	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13232	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr2.10424731.+	chr2	10424731	10424732	+	0	NA	Intergenic	Intergenic	-18299	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr19.267139.-	chr19	267139	267140	-	0	NA	Intergenic	CpG	-24030	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr11.119328330.+	chr11	119328330	119328331	+	0	NA	"intron (NR_034160, intron 2 of 3)"	AluSp|SINE|Alu	-34084	NM_006288	7070	Hs.644697	NM_006288		THY1	CD90	Thy-1 cell surface antigen	protein-coding
chrM.9821.+	chrM	9821	9822	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.132372597.-	chr12	132372597	132372598	-	0	NA	Intergenic	AluSx|SINE|Alu	6682	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr3.46709781.-	chr3	46709781	46709782	-	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	-9118	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr19.693378.-	chr19	693378	693379	-	0	NA	"intron (NM_214710, intron 2 of 4)"	"intron (NM_214710, intron 2 of 4)"	-2083	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chr16.78282847.-	chr16	78282847	78282848	-	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	-149520	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr9.36596651.-	chr9	36596651	36596652	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23792	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr8.21101012.-	chr8	21101012	21101013	-	0	NA	Intergenic	AluYb8|SINE|Alu	-269515	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr12.121168041.+	chr12	121168041	121168042	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSg|SINE|Alu	4470	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr4.185174150.-	chr4	185174150	185174151	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35036	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr1.62231061.+	chr1	62231061	62231062	+	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	22912	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr17.65363606.+	chr17	65363606	65363607	+	0	NA	promoter-TSS (NM_002816)	promoter-TSS (NM_002816)	-885	NM_002816	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr1.182583521.-	chr1	182583521	182583522	-	0	NA	promoter-TSS (NR_036490)	promoter-TSS (NR_036490)	754	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LOC284648	-	uncharacterized LOC284648	miscRNA
chr17.5148721.-	chr17	5148721	5148722	-	0	NA	Intergenic	AluSq|SINE|Alu	10566	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr13.25592828.-	chr13	25592828	25592829	-	0	NA	Intergenic	CpG	50221	NR_026730	646405	Hs.620592	NR_026730		TPTE2P1	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudo
chr16.4835239.+	chr16	4835239	4835240	+	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	-3159	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr1.227224333.-	chr1	227224333	227224334	-	0	NA	"intron (NM_014826, intron 22 of 34)"	AluYf4|SINE|Alu	-96395	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	ADCK3	ARCA2|CABC1|COQ10D4|COQ8|SCAR9	aarF domain containing kinase 3	protein-coding
chr19.36571205.-	chr19	36571205	36571206	-	0	NA	"intron (NM_173636, intron 9 of 31)"	AluY|SINE|Alu	-25422	NM_001083961	284403	Hs.116244	NM_001083961	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
chr8.141158131.-	chr8	141158131	141158132	-	0	NA	"intron (NM_031466, intron 17 of 22)"	L2b|LINE|L2	-309730	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr11.31555122.-	chr11	31555122	31555123	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluYk4|SINE|Alu	-23825	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr11.126081349.+	chr11	126081349	126081350	+	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	238	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr2.10405953.-	chr2	10405953	10405954	-	0	NA	Intergenic	Intergenic	37077	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr17.74707141.+	chr17	74707141	74707142	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-85	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr1.212494946.-	chr1	212494946	212494947	-	0	NA	"intron (NM_001199756, intron 1 of 12)"	SVA_D|Other|Other	-19798	NM_001199756	5525	Hs.744012	NM_001199756	ENSG00000066027	PPP2R5A	B56A|PR61A	"protein phosphatase 2, regulatory subunit B', alpha"	protein-coding
chr3.132757870.+	chr3	132757870	132757871	+	0	NA	"intron (NM_023943, intron 1 of 5)"	CpG	699	NM_023943	66000	Hs.191616	NM_001136469	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
chr10.30348341.-	chr10	30348341	30348342	-	0	NA	"intron (NM_020848, intron 1 of 3)"	CpG	-147	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
chr12.62886307.+	chr12	62886307	62886308	+	0	NA	"intron (NM_015026, intron 2 of 34)"	AluYb8|SINE|Alu	25710	NM_015026	23041	Hs.389378	NM_015026	ENSG00000061987	MON2	-	MON2 homolog (S. cerevisiae)	protein-coding
chr5.103114786.+	chr5	103114786	103114787	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-216296	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chrX.133953838.-	chrX	133953838	133953839	-	0	NA	"intron (NM_138819, intron 2 of 6)"	AluSx|SINE|Alu	-12615	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr20.62479287.-	chr20	62479287	62479288	-	0	NA	Intergenic	Intergenic	13279	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr2.234464488.-	chr2	234464488	234464489	-	0	NA	"intron (NM_018218, intron 4 of 30)"	AluY|SINE|Alu	-9748	NM_018218	55230	Hs.96513	NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
chr1.49045409.+	chr1	49045409	49045410	+	0	NA	"intron (NM_032785, intron 11 of 13)"	AluY|SINE|Alu	-107533	NM_019073	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
chrX.86721011.-	chrX	86721011	86721012	-	0	NA	Intergenic	SVA_C|Other|Other	51704	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr1.53393473.+	chr1	53393473	53393474	+	0	NA	"intron (NM_001193617, intron 1 of 14)"	CpG	572	NM_002979	6342	Hs.476365	NM_001007098	ENSG00000116171	SCP2	NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
chr14.104314004.-	chr14	104314004	104314005	-	0	NA	promoter-TSS (NM_015316)	promoter-TSS (NM_015316)	54	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr17.57645152.-	chr17	57645152	57645153	-	0	NA	"intron (NM_024612, intron 2 of 17)"	AluY|SINE|Alu	-2266	NM_024612	79665	Hs.29403	XM_003846599	ENSG00000108406	DHX40	DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding
chr5.176091499.+	chr5	176091499	176091500	+	0	NA	Intergenic	Intergenic	17111	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr18.34669447.-	chr18	34669447	34669448	-	0	NA	"intron (NM_020776, intron 7 of 9)"	AluSx|SINE|Alu	260268	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr9.128842633.-	chr9	128842633	128842634	-	0	NA	Intergenic	LTR7|LTR|ERV1	246490	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr13.111268322.-	chr13	111268322	111268323	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-391	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr19.50033445.-	chr19	50033445	50033446	-	0	NA	"intron (NM_020650, intron 2 of 6)"	AluSx|SINE|Alu	-2570	NM_020650	57333	Hs.567550	NM_020650	ENSG00000142552	RCN3	RLP49	"reticulocalbin 3, EF-hand calcium binding domain"	protein-coding
chr1.217697510.+	chr1	217697510	217697511	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106899	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chrX.152916303.-	chrX	152916303	152916304	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8406	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr12.123921342.+	chr12	123921342	123921343	+	0	NA	promoter-TSS (NM_145058)	promoter-TSS (NM_145058)	-78	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr5.179167554.-	chr5	179167554	179167555	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7703	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr16.58288664.+	chr16	58288664	58288665	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4824	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr13.111268086.-	chr13	111268086	111268087	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-155	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr22.50959103.-	chr22	50959103	50959104	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4930	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr9.138202282.-	chr9	138202282	138202283	-	0	NA	Intergenic	MER67B|LTR|ERV1	32813	NM_173520	157927	Hs.559511	NM_173520	ENSG00000178243	C9orf62	-	chromosome 9 open reading frame 62	protein-coding
chr10.129195998.-	chr10	129195998	129195999	-	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	151615	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr19.46966414.+	chr19	46966414	46966415	+	0	NA	Intergenic	AluSz|SINE|Alu	8406	NM_018215	55228	Hs.8395	NM_001103149	ENSG00000182013	PNMAL1	-	paraneoplastic Ma antigen family-like 1	protein-coding
chr5.159429718.+	chr5	159429718	159429719	+	0	NA	Intergenic	AluSz|SINE|Alu	-6462	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr5.179281168.+	chr5	179281168	179281169	+	0	NA	"intron (NM_001017987, intron 1 of 4)"	AluY|SINE|Alu	4672	NM_001017987	51149	Hs.741169	NM_001018061	ENSG00000161010	C5orf45	-	chromosome 5 open reading frame 45	protein-coding
chr5.3188290.-	chr5	3188290	3188291	-	0	NA	Intergenic	CpG	-347918	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr9.81893111.-	chr9	81893111	81893112	-	0	NA	Intergenic	Intergenic	293767	NM_007005	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4	"transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)"	protein-coding
chr2.92172357.+	chr2	92172357	92172358	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43198	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr3.46709800.-	chr3	46709800	46709801	-	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	-9099	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr17.30956490.-	chr17	30956490	30956491	-	0	NA	"intron (NM_015194, intron 20 of 21)"	AluSg7|SINE|Alu	-142385	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	"cyclin-dependent kinase 5, regulatory subunit 1 (p35)"	protein-coding
chr8.56758268.+	chr8	56758268	56758269	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34118	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr5.180198333.-	chr5	180198333	180198334	-	0	NA	Intergenic	SVA_D|Other|Other	31275	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr14.95067777.-	chr14	95067777	95067778	-	0	NA	Intergenic	AluY|SINE|Alu	10937	NM_001085	12	Hs.710488	NM_001085	ENSG00000196136	SERPINA3	AACT|ACT|GIG25	"serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3"	protein-coding
chr17.21027134.+	chr17	21027134	21027135	+	0	NA	Intergenic	AluSc|SINE|Alu	-3107	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr1.205227757.-	chr1	205227757	205227758	-	0	NA	"intron (NM_001242925, intron 2 of 4)"	"intron (NM_001242925, intron 2 of 4)"	-29698	NM_001242925	9911	Hs.6360	NM_001242925	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
chr8.144546602.-	chr8	144546602	144546603	-	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	34000	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.29422136.-	chr16	29422136	29422137	-	0	NA	Intergenic	AluSx|SINE|Alu	38530	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr16.88387047.+	chr16	88387047	88387048	+	0	NA	Intergenic	L2b|LINE|L2	-106832	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr21.46737211.-	chr21	46737211	46737212	-	0	NA	Intergenic	Intergenic	-29244	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr8.23379465.+	chr8	23379465	23379466	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6898	NM_016612	51312	Hs.726050	NM_016612		SLC25A37	MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	"solute carrier family 25 (mitochondrial iron transporter), member 37"	protein-coding
chr2.38825114.-	chr2	38825114	38825115	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5064	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr6.151771583.-	chr6	151771583	151771584	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1733	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr7.157129518.+	chr7	157129518	157129519	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-192	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr21.43145924.+	chr21	43145924	43145925	+	0	NA	Intergenic	Intergenic	9328	NR_024028	54089	Hs.98186	NR_024028	ENSG00000232401	LINC00112	C21orf22|NCRNA00112	long intergenic non-protein coding RNA 112	miscRNA
chr3.15431337.-	chr3	15431337	15431338	-	0	NA	Intergenic	AluSp|SINE|Alu	-37705	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr8.28449390.-	chr8	28449390	28449391	-	0	NA	Intergenic	AluSg4|SINE|Alu	86691	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	miscRNA
chr4.186887794.-	chr4	186887794	186887795	-	0	NA	Intergenic	AluSx1|SINE|Alu	9924	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr7.394840.-	chr7	394840	394841	-	0	NA	Intergenic	Intergenic	24551	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr9.34969454.-	chr9	34969454	34969455	-	0	NA	"intron (NM_015297, intron 1 of 7)"	AluSc8|SINE|Alu	-11262	NM_015297	23349	Hs.7989	NM_015297	ENSG00000122733	KIAA1045	RP11-392A14.4	KIAA1045	protein-coding
chr8.84213164.+	chr8	84213164	84213165	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-882289	NM_001100393	138046	Hs.121663	NM_001100391	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
chr21.42046726.-	chr21	42046726	42046727	-	0	NA	"intron (NM_001389, intron 3 of 32)"	AluY|SINE|Alu	44033	NR_046774	100874326	Hs.679746	NR_046774		DSCAM-IT1	zag4	DSCAM intronic transcript 1 (non-protein coding)	miscRNA
chr12.33592870.+	chr12	33592870	33592871	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-116	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr19.44199907.-	chr19	44199907	44199908	-	0	NA	Intergenic	AluSx|SINE|Alu	20307	NM_019612	56269	Hs.515444	NM_019612	ENSG00000124449	IRGC	CINEMA|IFGGE|IRGC1|Iigp5|R30953_1	"immunity-related GTPase family, cinema"	protein-coding
chr9.135038286.+	chr9	135038286	135038287	+	0	NA	"intron (NM_032536, intron 1 of 7)"	CpG	952	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr12.112051669.+	chr12	112051669	112051670	+	0	NA	Intergenic	AluY|SINE|Alu	-14189	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chr7.95178753.+	chr7	95178753	95178754	+	0	NA	Intergenic	AluY|SINE|Alu	47172	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr22.51001332.+	chr22	51001332	51001333	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-4	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr3.29051405.-	chr3	29051405	29051406	-	0	NA	Intergenic	AluSc8|SINE|Alu	271398	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr19.46380340.+	chr19	46380340	46380341	+	0	NA	Intergenic	Intergenic	9036	NM_015649	26145	Hs.515477	NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
chr6.126100201.+	chr6	126100201	126100202	+	0	NA	Intergenic	AluY|SINE|Alu	-2106	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr9.100747354.+	chr9	100747354	100747355	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1865	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr11.1316550.+	chr11	1316550	1316551	+	0	NA	"intron (NM_019009, intron 2 of 5)"	CpG	14342	NM_019009	54472	Hs.368527	NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
chr6.46742400.-	chr6	46742400	46742401	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18694	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr12.129892209.-	chr12	129892209	129892210	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496003	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr2.107084270.+	chr2	107084270	107084271	+	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	531	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chr10.69822239.+	chr10	69822239	69822240	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12864	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr15.42139655.-	chr15	42139655	42139656	-	0	NA	TTS (NM_016642)	TTS (NM_016642)	-8644	NM_001114633	100137049	Hs.198161	NM_001114633	ENSG00000168970	PLA2G4B	HsT16992|cPLA2-beta	"phospholipase A2, group IVB (cytosolic)"	protein-coding
chr15.63229232.+	chr15	63229232	63229233	+	0	NA	Intergenic	AluSp|SINE|Alu	-105606	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr18.49731971.+	chr18	49731971	49731972	+	0	NA	Intergenic	AluY|SINE|Alu	-134571	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr13.21644841.-	chr13	21644841	21644842	-	0	NA	Intergenic	AluSx|SINE|Alu	9119	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr11.57521493.+	chr11	57521493	57521494	+	0	NA	"intron (NR_037646, intron 2 of 20)"	AluSx3|SINE|Alu	-2240	NM_001145101	643376	Hs.606355	NM_001145101	ENSG00000233436	BTBD18	-	BTB (POZ) domain containing 18	protein-coding
chr7.13901588.-	chr7	13901588	13901589	-	0	NA	Intergenic	AluJb|SINE|Alu	-124551	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr19.470939.-	chr19	470939	470940	-	0	NA	"intron (NM_182577, intron 2 of 3)"	"intron (NM_182577, intron 2 of 3)"	-4044	NM_182577	284451	Hs.104777	NM_182577	ENSG00000181781	ODF3L2	C19orf19	outer dense fiber of sperm tails 3-like 2	protein-coding
chr13.41271267.+	chr13	41271267	41271268	+	0	NA	Intergenic	AluY|SINE|Alu	-30533	NM_002015	2308	Hs.370666	NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
chr13.112726532.+	chr13	112726532	112726533	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4619	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr12.116724221.+	chr12	116724221	116724222	+	0	NA	Intergenic	AluY|SINE|Alu	-9230	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr21.45684265.+	chr21	45684265	45684266	+	0	NA	Intergenic	AluY|SINE|Alu	-2166	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr3.129048069.-	chr3	129048069	129048070	-	0	NA	Intergenic	AluY|SINE|Alu	12949	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr15.65837283.+	chr15	65837283	65837284	+	0	NA	"intron (NM_016395, intron 1 of 10)"	AluSp|SINE|Alu	14456	NM_016395	51495	Hs.512973	NM_016395	ENSG00000074696	PTPLAD1	B-IND1|HACD3|HSPC121	protein tyrosine phosphatase-like A domain containing 1	protein-coding
chr7.53196229.+	chr7	53196229	53196230	+	0	NA	Intergenic	AluY|SINE|Alu	92880	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr19.7712321.+	chr19	7712321	7712322	+	0	NA	"exon (NM_001272034, exon 18 of 19)"	"exon (NM_001272034, exon 18 of 19)"	10334	NM_001127396	6813	Hs.515104	NM_001127396	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122	syntaxin binding protein 2	protein-coding
chr11.9503837.-	chr11	9503837	9503838	-	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	-21325	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr7.66480044.-	chr7	66480044	66480045	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18252	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr18.19630077.+	chr18	19630077	19630078	+	0	NA	Intergenic	AluY|SINE|Alu	-119327	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr2.87655689.-	chr2	87655689	87655690	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	99285	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr17.29255150.-	chr17	29255150	29255151	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6396	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr3.88595904.-	chr3	88595904	88595905	-	0	NA	Intergenic	AluSc8|SINE|Alu	396888	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chrX.93693166.+	chrX	93693166	93693167	+	0	NA	Intergenic	AluY|SINE|Alu	764154	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chr7.5396274.-	chr7	5396274	5396275	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	-66903	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr22.47162087.+	chr22	47162087	47162088	+	0	NA	"intron (NM_014346, intron 1 of 12)"	AluY|SINE|Alu	3569	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chrX.53123322.-	chrX	53123322	53123323	-	0	NA	Intergenic	CpG	-11780	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr14.105618890.-	chr14	105618890	105618891	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16271	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr1.211688778.+	chr1	211688778	211688779	+	0	NA	Intergenic	CpG	-22519	NM_183059	343035	Hs.632495	NM_001164688	ENSG00000198570	RD3	C1orf36|LCA12	retinal degeneration 3	protein-coding
chr16.88946958.-	chr16	88946958	88946959	-	0	NA	"intron (NM_175931, intron 9 of 10)"	"intron (NM_175931, intron 9 of 10)"	13890	NM_001080487	390748	Hs.730522	NM_001080487	ENSG00000205022	PABPN1L	PABPNL1|ePABP2	"poly(A) binding protein, nuclear 1-like (cytoplasmic)"	protein-coding
chr1.89408346.-	chr1	89408346	89408347	-	0	NA	"intron (NM_001008662, intron 12 of 12)"	AluY|SINE|Alu	-50297	NM_019610	494115	Hs.481898	NM_001162536	ENSG00000213516	RBMXL1	RBM1	"RNA binding motif protein, X-linked-like 1"	protein-coding
chr2.1554742.-	chr2	1554742	1554743	-	0	NA	Intergenic	Intergenic	-136562	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr12.130648045.-	chr12	130648045	130648046	-	0	NA	"exon (NM_007197, exon 1 of 1)"	"exon (NM_007197, exon 1 of 1)"	-1041	NM_007197	11211	Hs.733275	NM_007197	ENSG00000111432	FZD10	CD350|FZ-10|Fz10|FzE7|hFz10	frizzled family receptor 10	protein-coding
chr21.34914921.+	chr21	34914921	34914922	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	274	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr7.4681707.+	chr7	4681707	4681708	+	0	NA	Intergenic	CpG	-40223	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr11.89400812.+	chr11	89400812	89400813	+	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	8347	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr6.169849662.-	chr6	169849662	169849663	-	0	NA	Intergenic	Intergenic	195525	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr8.22594672.-	chr8	22594672	22594673	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43857	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr6.133986046.+	chr6	133986046	133986047	+	0	NA	Intergenic	SVA_F|Other|Other	-156239	NR_027030	154089	Hs.126165	NR_027030		MGC34034	-	uncharacterized protein MGC34034	miscRNA
chrX.144902982.-	chrX	144902982	144902983	-	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	-116	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr15.37172901.-	chr15	37172901	37172902	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5833	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr8.5296104.+	chr8	5296104	5296105	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-443776	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr4.29104979.-	chr4	29104979	29104980	-	0	NA	Intergenic	AluSz|SINE|Alu	-283775	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	miscRNA
chr16.8974124.-	chr16	8974124	8974125	-	0	NA	Intergenic	Intergenic	11261	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr13.96743099.+	chr13	96743099	96743100	+	0	NA	promoter-TSS (NM_153456)	promoter-TSS (NM_153456)	6	NM_153456	266722	Hs.740393	XM_003846570		HS6ST3	HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
chr2.218794113.-	chr2	218794113	218794114	-	0	NA	"intron (NM_022648, intron 1 of 32)"	"intron (NM_022648, intron 1 of 32)"	-14683	NM_022648	7145	Hs.471381	NM_022648	ENSG00000079308	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|TNS	tensin 1	protein-coding
chr6.162998517.-	chr6	162998517	162998518	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149647	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr21.35774222.+	chr21	35774222	35774223	+	0	NA	Intergenic	AluSc8|SINE|Alu	26473	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr1.101786727.-	chr1	101786727	101786728	-	0	NA	Intergenic	AluY|SINE|Alu	-19724	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr1.6470883.-	chr1	6470883	6470884	-	0	NA	Intergenic	AluSz|SINE|Alu	-9096	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr8.123794219.-	chr8	123794219	123794220	-	0	NA	"intron (NM_014943, intron 1 of 3)"	CpG-25975	-318	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr6.123144197.+	chr6	123144197	123144198	+	0	NA	Intergenic	AluY|SINE|Alu	34226	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr9.80898949.+	chr9	80898949	80898950	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13110	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr16.9185058.-	chr16	9185058	9185059	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	479	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr14.95235824.+	chr14	95235824	95235825	+	0	NA	"intron (NM_173849, intron 1 of 2)"	CpG-7328	675	NM_173849	145258	Hs.440438	NM_173849	ENSG00000133937	GSC	-	goosecoid homeobox	protein-coding
chr13.110832772.+	chr13	110832772	110832773	+	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	126724	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chr2.38870494.-	chr2	38870494	38870495	-	0	NA	Intergenic	LTR12C|LTR|ERV1	22558	NM_138801	130589	Hs.435012	NM_138801	ENSG00000143891	GALM	IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
chr6.12012491.+	chr6	12012491	12012492	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-233	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chrX.81762761.+	chrX	81762761	81762762	+	0	NA	Intergenic	AluY|SINE|Alu	-1000508	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr6.7109550.+	chr6	7109550	7109551	+	0	NA	"intron (NM_001003699, intron 1 of 12)"	CpG	1464	NM_001003699	6239	Hs.298248	NM_001003698	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
chr1.10888929.+	chr1	10888929	10888930	+	0	NA	Intergenic	Intergenic	-32196	NM_017766	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr2.121425243.+	chr2	121425243	121425244	+	0	NA	Intergenic	AluY|SINE|Alu	-129624	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr3.9429651.+	chr3	9429651	9429652	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9523	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr15.41613141.+	chr15	41613141	41613142	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11678	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr1.160239908.+	chr1	160239908	160239909	+	0	NA	Intergenic	AluJo|SINE|Alu	-7558	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr2.221058143.-	chr2	221058143	221058144	-	0	NA	Intergenic	MER52A|LTR|ERV1	286857	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr3.185305635.+	chr3	185305635	185305636	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1604	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr2.207036839.-	chr2	207036839	207036840	-	0	NA	Intergenic	SVA_D|Other|Other	-9887	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr15.100080063.-	chr15	100080063	100080064	-	0	NA	Intergenic	AluSq2|SINE|Alu	26070	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr14.102970597.+	chr14	102970597	102970598	+	0	NA	Intergenic	Intergenic	5531	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr15.41674365.+	chr15	41674365	41674366	+	0	NA	Intergenic	SVA_F|Other|Other	20293	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr5.42921812.+	chr5	42921812	42921813	+	0	NA	Intergenic	AluY|SINE|Alu	97101	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	miscRNA
chr19.35600810.+	chr19	35600810	35600811	+	0	NA	Intergenic	Intergenic	-3602	NR_024562	100128675	Hs.633989	NR_024561	ENSG00000227392	LOC100128675	-	uncharacterized LOC100128675	miscRNA
chr12.101802404.-	chr12	101802404	101802405	-	0	NA	promoter-TSS (NM_001177)	promoter-TSS (NM_001177)	832	NM_001177	400	Hs.732900	NM_001177	ENSG00000120805	ARL1	ARFL1	ADP-ribosylation factor-like 1	protein-coding
chr2.11411919.-	chr2	11411919	11411920	-	0	NA	"intron (NM_004850, intron 3 of 32)"	AluY|SINE|Alu	-72792	NM_004850	9475	Hs.681743	NM_004850		ROCK2	ROCK-II	"Rho-associated, coiled-coil containing protein kinase 2"	protein-coding
chr2.131551987.+	chr2	131551987	131551988	+	0	NA	Intergenic	AluY|SINE|Alu	38123	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr15.91370847.-	chr15	91370847	91370848	-	0	NA	Intergenic	AluSz|SINE|Alu	41038	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr17.11800276.+	chr17	11800276	11800277	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14057	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr7.1071470.-	chr7	1071470	1071471	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	8808	NR_029898	442907		NR_029898		MIR339	MIRN339|hsa-mir-339	microRNA 339	miscRNA
chrX.70362629.+	chrX	70362629	70362630	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-2052	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr8.143698143.-	chr8	143698143	143698144	-	0	NA	Intergenic	Intergenic	2310	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr2.20424074.+	chr2	20424074	20424075	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	853	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chrX.68956126.+	chrX	68956126	68956127	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSp|SINE|Alu	120215	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr17.42869181.+	chr17	42869181	42869182	+	0	NA	Intergenic	AluY|SINE|Alu	32613	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr1.9517595.-	chr1	9517595	9517596	-	0	NA	Intergenic	AluJb|SINE|Alu	81933	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr6.99282230.-	chr6	99282230	99282231	-	0	NA	promoter-TSS (NM_005604)	promoter-TSS (NM_005604)	350	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
chr4.53595.+	chr4	53595	53596	+	0	NA	"intron (NM_182524, intron 1 of 5)"	CpG	318	NM_001039127	255403	Hs.744444	NM_001039127		ZNF718	-	zinc finger protein 718	protein-coding
chr4.16565271.-	chr4	16565271	16565272	-	0	NA	"intron (NM_001130834, intron 5 of 8)"	AluY|SINE|Alu	-58383	NR_049865	100847063		NR_049865		MIR548AX	-	microRNA 548ax	miscRNA
chr12.106777495.+	chr12	106777495	106777496	+	0	NA	"intron (NM_018082, intron 9 of 27)"	AluSz|SINE|Alu	25635	NM_001160708	55703	Hs.610795	NM_001160708	ENSG00000013503	POLR3B	C128|HLD8|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding
chr15.74907264.-	chr15	74907264	74907265	-	0	NA	promoter-TSS (NM_001130028)	promoter-TSS (NM_001130028)	71	NM_001130028	1198	Hs.584748	NM_001130028	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC-like kinase 3	protein-coding
chr5.171539620.+	chr5	171539620	171539621	+	0	NA	"intron (NM_005990, intron 4 of 18)"	AluY|SINE|Alu	75726	NM_005990	6793	Hs.744005	NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
chr7.5629220.-	chr7	5629220	5629221	-	0	NA	Intergenic	AluJo|SINE|Alu	3216	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr11.5315856.-	chr11	5315856	5315857	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7320	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chrX.133976885.+	chrX	133976885	133976886	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35662	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr1.234614798.-	chr1	234614798	234614799	-	0	NA	promoter-TSS (NM_005646)	promoter-TSS (NM_005646)	-51	NM_005646	6894	Hs.498115	NM_005646	ENSG00000059588	TARBP1	TRM3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
chr2.202092474.-	chr2	202092474	202092475	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5692	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr2.101924979.+	chr2	101924979	101924980	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	199	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr9.37036815.+	chr9	37036815	37036816	+	0	NA	Intergenic	CpG	-2339	NM_016734	5079	Hs.654464	NM_016734		PAX5	BSAP	paired box 5	protein-coding
chr16.1807910.+	chr16	1807910	1807911	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13800	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr6.88090569.+	chr6	88090569	88090570	+	0	NA	Intergenic	AluJb|SINE|Alu	-16273	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr12.95549202.+	chr12	95549202	95549203	+	0	NA	"intron (NM_018351, intron 3 of 20)"	AluSx|SINE|Alu	62038	NM_018351	55785	Hs.506381	NM_018351	ENSG00000180263	FGD6	ZFYVE24	"FYVE, RhoGEF and PH domain containing 6"	protein-coding
chr16.723814.-	chr16	723814	723815	-	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	2261	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr10.2037071.-	chr10	2037071	2037072	-	0	NA	Intergenic	LTR16A1|LTR|ERVL	-19471	NR_040253	282980	Hs.576810	NR_040253	ENSG00000234962	LINC00700	-	long intergenic non-protein coding RNA 700	miscRNA
chr6.169424736.-	chr6	169424736	169424737	-	0	NA	Intergenic	CpG	-229401	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr17.72464888.+	chr17	72464888	72464889	+	0	NA	"intron (NM_001256841, intron 1 of 5)"	AluSx1|SINE|Alu	2366	NM_001256841	11314	Hs.9688	NM_001256841	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
chr9.74464987.-	chr9	74464987	74464988	-	0	NA	Intergenic	AluY|SINE|Alu	-61161	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr1.31645424.+	chr1	31645424	31645425	+	0	NA	Intergenic	AluSc8|SINE|Alu	67310	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr10.47621169.-	chr10	47621169	47621170	-	0	NA	Intergenic	Intergenic	125751	NM_001630	244	Hs.705389	NM_001630	ENSG00000186807	ANXA8L2	ANXA8|bA145E20.2	annexin A8-like 2	protein-coding
chr2.131551974.+	chr2	131551974	131551975	+	0	NA	Intergenic	AluY|SINE|Alu	38110	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr2.38595158.+	chr2	38595158	38595159	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9274	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr12.57177814.+	chr12	57177814	57177815	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20706	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr7.130728516.+	chr7	130728516	130728517	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63273	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr13.66834733.-	chr13	66834733	66834734	-	0	NA	Intergenic	LTR1B|LTR|ERV1	564568	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr11.64120596.-	chr11	64120596	64120597	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6029	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr19.4065764.-	chr19	4065764	4065765	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1052	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr2.157272388.-	chr2	157272388	157272389	-	0	NA	Intergenic	AluYa5|SINE|Alu	19577	NM_001083112	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
chr20.50013452.+	chr20	50013452	50013453	+	0	NA	"intron (NM_173091, intron 9 of 9)"	"intron (NM_173091, intron 9 of 9)"	56062	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	miscRNA
chr16.79051185.-	chr16	79051185	79051186	-	0	NA	"intron (NM_016373, intron 8 of 8)"	AluY|SINE|Alu	-583437	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	protein-coding
chr9.128842642.-	chr9	128842642	128842643	-	0	NA	Intergenic	LTR7|LTR|ERV1	246481	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr14.78273360.-	chr14	78273360	78273361	-	0	NA	"intron (NM_001142545, intron 1 of 9)"	MER54A|LTR|ERVL	-6934	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr4.8913703.+	chr4	8913703	8913704	+	0	NA	Intergenic	Intergenic	-37774	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr6.46742365.+	chr6	46742365	46742366	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18729	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr8.23097365.-	chr8	23097365	23097366	-	0	NA	Intergenic	AluY|SINE|Alu	3785	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chrM.140.-	chrM	140	141	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.17598112.-	chr17	17598112	17598113	-	0	NA	"intron (NM_030665, intron 1 of 5)"	CpG	-13325	NM_030665	10743	Hs.727059	NM_030665	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
chr9.139085614.-	chr9	139085614	139085615	-	0	NA	Intergenic	CpG	-9390	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr7.5583956.+	chr7	5583956	5583957	+	0	NA	Intergenic	AluY|SINE|Alu	-13724	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr7.330753.+	chr7	330753	330754	+	0	NA	"exon (NM_001195127, exon 2 of 3)"	"exon (NM_001195127, exon 2 of 3)"	617	NM_001195127	100288524	Hs.702860	NM_001195127		LOC100288524	-	forkhead box L1-like	protein-coding
chr2.86012663.-	chr2	86012663	86012664	-	0	NA	"intron (NM_032827, intron 2 of 2)"	"intron (NM_032827, intron 2 of 2)"	29590	NR_038888	284950	Hs.570227	NR_038888		LOC284950	-	uncharacterized LOC284950	miscRNA
chr16.679603.+	chr16	679603	679604	+	0	NA	TTS (NM_021168)	TTS (NM_021168)	-1409	NM_053284	117166	Hs.345818	NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	"WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1"	protein-coding
chr20.35167625.+	chr20	35167625	35167626	+	0	NA	Intergenic	AluY|SINE|Alu	-2262	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr19.34394385.-	chr19	34394385	34394386	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106634	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr20.46019541.-	chr20	46019541	46019542	-	0	NA	Intergenic	AluY|SINE|Alu	34067	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr20.4729576.+	chr20	4729576	4729577	+	0	NA	Intergenic	Intergenic	-8262	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr14.101892578.+	chr14	101892578	101892579	+	0	NA	Intergenic	AluY|SINE|Alu	129435	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr1.2721529.-	chr1	2721529	2721530	-	0	NA	Intergenic	Intergenic	15299	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr12.51681513.-	chr12	51681513	51681514	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17311	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr19.1009453.+	chr19	1009453	1009454	+	0	NA	TTS (NM_033420)	TTS (NM_033420)	9016	NM_138690	116444	Hs.660378	XM_003403700	ENSG00000116032	GRIN3B	GluN3B|NR3B	"glutamate receptor, ionotropic, N-methyl-D-aspartate 3B"	protein-coding
chr9.135230121.+	chr9	135230121	135230122	+	0	NA	"intron (NM_015046, intron 1 of 25)"	CpG	251	NM_015046	23064	Hs.460317	NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAR1|bA479K20.2	senataxin	protein-coding
chr4.1219385.+	chr4	1219385	1219386	+	0	NA	"intron (NM_001012614, intron 4 of 9)"	CpG-19423	-16635	NR_024569	100130872	Hs.302963	NR_024569		LOC100130872	-	uncharacterized LOC100130872	miscRNA
chr6.168395040.-	chr6	168395040	168395041	-	0	NA	Intergenic	AluSx|SINE|Alu	17421	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr9.425356.+	chr9	425356	425357	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44938	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr9.38829865.+	chr9	38829865	38829866	+	0	NA	Intergenic	AluY|SINE|Alu	208780	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr3.46709793.+	chr3	46709793	46709794	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9106	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr18.77244889.-	chr18	77244889	77244890	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84563	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr21.45432170.-	chr21	45432170	45432171	-	0	NA	promoter-TSS (NM_003274)	promoter-TSS (NM_003274)	36	NM_003274	7109	Hs.126221	NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
chr20.33005265.+	chr20	33005265	33005266	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48865	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr5.694004.+	chr5	694004	694005	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-494	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr4.177146931.-	chr4	177146931	177146932	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30109	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr3.71746096.+	chr3	71746096	71746097	+	0	NA	"intron (NM_001134650, intron 4 of 7)"	AluY|SINE|Alu	28430	NM_001134651	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr7.64493628.+	chr7	64493628	64493629	+	0	NA	Intergenic	SVA_C|Other|Other	-5104	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr19.1974663.+	chr19	1974663	1974664	+	0	NA	"intron (NM_001319, intron 2 of 11)"	"intron (NM_001319, intron 2 of 11)"	-20115	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	miscRNA
chr22.31477316.-	chr22	31477316	31477317	-	0	NA	promoter-TSS (NM_006932)	promoter-TSS (NM_006932)	-34	NM_134270	6525	Hs.149098	NM_001207017	ENSG00000183963	SMTN	-	smoothelin	protein-coding
chr1.65532955.+	chr1	65532955	65532956	+	0	NA	Intergenic	CpG	-8764	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr6.135685303.+	chr6	135685303	135685304	+	0	NA	"intron (NM_001134831, intron 23 of 28)"	SVA_D|Other|Other	133600	NM_017651	54806	Hs.386684	NM_001134830	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
chr13.25859731.-	chr13	25859731	25859732	-	0	NA	"intron (NM_004685, intron 1 of 13)"	AluSx1|SINE|Alu	-1973	NM_004685	9107	Hs.643702	NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
chrX.152908020.+	chrX	152908020	152908021	+	0	NA	"5' UTR (NM_001395, exon 1 of 4)"	"5' UTR (NM_001395, exon 1 of 4)"	123	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr19.35368082.-	chr19	35368082	35368083	-	0	NA	Intergenic	AluY|SINE|Alu	-21765	NR_046222	100652909	Hs.374015	NR_046222		LOC100652909	-	uncharacterized LOC100652909	miscRNA
chr11.73472150.-	chr11	73472150	73472151	-	0	NA	promoter-TSS (NM_002869)	promoter-TSS (NM_002869)	-51	NM_198896	5870	Hs.535586	NM_001243718	ENSG00000175582	RAB6A	RAB6	"RAB6A, member RAS oncogene family"	protein-coding
chr12.112407450.-	chr12	112407450	112407451	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43573	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr5.22972642.+	chr5	22972642	22972643	+	0	NA	Intergenic	AluSx3|SINE|Alu	-118911	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	"cadherin 12, type 2 (N-cadherin 2)"	protein-coding
chr2.242480070.-	chr2	242480070	242480071	-	0	NA	Intergenic	Intergenic	18076	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chrX.118871988.+	chrX	118871988	118871989	+	0	NA	Intergenic	AluYc|SINE|Alu	-20588	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr5.139090845.-	chr5	139090845	139090846	-	0	NA	Intergenic	CpG	-62544	NM_016463	51523	Hs.189119	NM_016463		CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
chr20.62111462.+	chr20	62111462	62111463	+	0	NA	Intergenic	CpG	-7469	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr17.57884674.-	chr17	57884674	57884675	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33953	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chrX.129231002.-	chrX	129231002	129231003	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13473	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr17.29255156.+	chr17	29255156	29255157	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6402	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr8.3501041.+	chr8	3501041	3501042	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351287	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr1.43612801.+	chr1	43612801	43612802	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-793	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chr1.16973992.+	chr1	16973992	16973993	+	0	NA	"non-coding (NR_027504, exon 6 of 14)"	"non-coding (NR_027504, exon 6 of 14)"	1923	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr16.5141853.+	chr16	5141853	5141854	+	0	NA	"exon (NM_201400, exon 4 of 8)"	"exon (NM_201400, exon 4 of 8)"	5936	NM_201400	196483	Hs.592086	NM_201400	ENSG00000118894	FAM86A	-	"family with sequence similarity 86, member A"	protein-coding
chr1.5408849.-	chr1	5408849	5408850	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	215282	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	miscRNA
chr16.88510920.+	chr16	88510920	88510921	+	0	NA	Intergenic	Intergenic	-9094	NM_153813	161882	Hs.632218	NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	"zinc finger protein, FOG family member 1"	protein-coding
chr16.3174806.+	chr16	3174806	3174807	+	0	NA	Intergenic	CpG	-9207	NR_024167	81854	Hs.669490	NR_024166	ENSG00000263214	ZNF205-AS1	-	ZNF205 antisense RNA 1	miscRNA
chr2.136633747.+	chr2	136633747	136633748	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	300	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr14.23706370.+	chr14	23706370	23706371	+	0	NA	Intergenic	AluSz|SINE|Alu	48939	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr1.24829826.+	chr1	24829826	24829827	+	0	NA	promoter-TSS (NR_045407)	promoter-TSS (NR_045407)	439	NM_001251981	11123	Hs.737226	NM_001251977	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
chr9.132329417.+	chr9	132329417	132329418	+	0	NA	Intergenic	L2b|LINE|L2	53638	NM_199350	375759	Hs.124223	NM_199350	ENSG00000179058	C9orf50	-	chromosome 9 open reading frame 50	protein-coding
chr13.114899236.+	chr13	114899236	114899237	+	0	NA	Intergenic	Intergenic	-1141	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr19.19594714.-	chr19	19594714	19594715	-	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	-31755	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr17.79185880.+	chr17	79185880	79185881	+	0	NA	"intron (NM_014984, intron 2 of 25)"	AluSx|SINE|Alu	10871	NM_001009811	22994	Hs.514578	NM_001009811	ENSG00000141577	AZI1	AZ1|Cep131|ZA1	5-azacytidine induced 1	protein-coding
chr1.188418074.+	chr1	188418074	188418075	+	0	NA	Intergenic	AluY|SINE|Alu	1620042	NM_024420	5321	Hs.497200	NM_024420	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2-alpha	"phospholipase A2, group IVA (cytosolic, calcium-dependent)"	protein-coding
chr12.112620067.-	chr12	112620067	112620068	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56718	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr18.7062486.+	chr18	7062486	7062487	+	0	NA	"intron (NM_005559, intron 3 of 62)"	"intron (NM_005559, intron 3 of 62)"	55327	NM_005559	284217	Hs.270364	NM_005559	ENSG00000101680	LAMA1	LAMA|S-LAM-alpha	"laminin, alpha 1"	protein-coding
chrX.53125840.+	chrX	53125840	53125841	+	0	NA	Intergenic	AluJb|SINE|Alu	14298	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr22.21042871.+	chr22	21042871	21042872	+	0	NA	promoter-TSS (NR_024592)	promoter-TSS (NR_024592)	-972	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr5.178657982.+	chr5	178657982	178657983	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114449	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr4.42658288.+	chr4	42658288	42658289	+	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	834	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr7.95234910.-	chr7	95234910	95234911	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8985	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr8.1321529.-	chr8	1321529	1321530	-	0	NA	Intergenic	CpG	70702	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr16.89034060.-	chr16	89034060	89034061	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9444	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr6.42510201.-	chr6	42510201	42510202	-	0	NA	Intergenic	AluY|SINE|Alu	21559	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr18.55621043.+	chr18	55621043	55621044	+	0	NA	Intergenic	AluSc8|SINE|Alu	-90567	NM_015277	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr7.91257036.-	chr7	91257036	91257037	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252980	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr21.27382855.-	chr21	27382855	27382856	-	0	NA	"intron (NM_001136016, intron 6 of 16)"	AluSx1|SINE|Alu	-129853	NM_001136016	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
chr7.36403823.-	chr7	36403823	36403824	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2959	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr3.8721149.-	chr3	8721149	8721150	-	0	NA	Intergenic	Intergenic	27385	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr19.49061658.-	chr19	49061658	49061659	-	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	-6229	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr15.59685666.-	chr15	59685666	59685667	-	0	NA	Intergenic	AluSg4|SINE|Alu	20595	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
chr12.122415789.+	chr12	122415789	122415790	+	0	NA	"intron (NM_144668, intron 19 of 21)"	AluY|SINE|Alu	-44072	NM_020993	605	Hs.530970	NM_001024808		BCL7A	BCL7	B-cell CLL/lymphoma 7A	protein-coding
chr21.31598850.-	chr21	31598850	31598851	-	0	NA	Intergenic	AluSx4|SINE|Alu	10381	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr8.141276695.+	chr8	141276695	141276696	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191166	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr1.182234385.+	chr1	182234385	182234386	+	0	NA	Intergenic	AluJb|SINE|Alu	126154	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr2.202898657.-	chr2	202898657	202898658	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	653	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr16.9185073.-	chr16	9185073	9185074	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	464	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr19.46277573.-	chr19	46277573	46277574	-	0	NA	"intron (NM_001081563, intron 8 of 13)"	AluY|SINE|Alu	5076	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
chr2.218944865.-	chr2	218944865	218944866	-	0	NA	"intron (NR_034176, intron 11 of 13)"	"intron (NR_034176, intron 11 of 13)"	-11127	NM_198483	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
chr17.8061092.+	chr17	8061092	8061093	+	0	NA	Intergenic	AluSx|SINE|Alu	5201	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr9.16855698.-	chr9	16855698	16855699	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-15088	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr17.12756030.+	chr17	12756030	12756031	+	0	NA	"intron (NM_014859, intron 1 of 20)"	AluY|SINE|Alu	63201	NM_014859	9912	Hs.499758	NM_014859	ENSG00000006740	ARHGAP44	NPC-A-10|RICH2	Rho GTPase activating protein 44	protein-coding
chrX.55187480.+	chrX	55187480	55187481	+	0	NA	promoter-TSS (NM_001166702)	promoter-TSS (NM_001166702)	55	NM_001166703	90736	Hs.415414	NM_001166699	ENSG00000182518	FAM104B	CXorf44	"family with sequence similarity 104, member B"	protein-coding
chr3.57719312.-	chr3	57719312	57719313	-	0	NA	Intergenic	AluSg4|SINE|Alu	23862	NM_007159	7871	Hs.476432	NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
chr10.28933538.+	chr10	28933538	28933539	+	0	NA	Intergenic	AluSz|SINE|Alu	-32886	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	protein-coding
chr1.3055334.+	chr1	3055334	3055335	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	10795	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr10.7626521.+	chr10	7626521	7626522	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35115	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr13.21872292.-	chr13	21872292	21872293	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-28	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr15.82554428.-	chr15	82554428	82554429	-	0	NA	promoter-TSS (NM_001008226)	promoter-TSS (NM_001008226)	-676	NM_024580	79631	Hs.459114	NM_001040610	ENSG00000140598	EFTUD1	FAM42A|HsT19294|RIA1	elongation factor Tu GTP binding domain containing 1	protein-coding
chr8.98786431.+	chr8	98786431	98786432	+	0	NA	Intergenic	LTR17|LTR|ERV1	-1378	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr3.49940651.-	chr3	49940651	49940652	-	0	NA	"exon (NM_002447, exon 1 of 20)"	"exon (NM_002447, exon 1 of 20)"	-655	NM_001244937	4486	Hs.517973	NM_001244937	ENSG00000164078	MST1R	CD136|CDw136|PTK8|RON	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding
chr1.247613579.+	chr1	247613579	247613580	+	0	NA	TTS (NM_001004492)	TTS (NM_001004492)	1705	NM_001004492	127623	Hs.446999	NM_001004492	ENSG00000177535	OR2B11	-	"olfactory receptor, family 2, subfamily B, member 11"	protein-coding
chr8.27509120.+	chr8	27509120	27509121	+	0	NA	"exon (NM_182826, exon 3 of 6)"	"exon (NM_182826, exon 3 of 6)"	17543	NM_016240	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	"scavenger receptor class A, member 3"	protein-coding
chr8.22298878.-	chr8	22298878	22298879	-	0	NA	"5' UTR (NM_005605, exon 1 of 14)"	"5' UTR (NM_005605, exon 1 of 14)"	-395	NM_001243974	5533	Hs.731683	NM_001243974	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	"protein phosphatase 3, catalytic subunit, gamma isozyme"	protein-coding
chr8.17013879.-	chr8	17013879	17013880	-	0	NA	promoter-TSS (NM_016353)	promoter-TSS (NM_016353)	-43	NM_016353	51201	Hs.744097	NM_016353		ZDHHC2	DHHC2|ZNF372	"zinc finger, DHHC-type containing 2"	protein-coding
chr6.34759807.+	chr6	34759807	34759808	+	0	NA	promoter-TSS (NM_017754)	promoter-TSS (NM_017754)	13	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr1.1234298.-	chr1	1234298	1234299	-	0	NA	"intron (NM_030649, intron 10 of 23)"	"intron (NM_030649, intron 10 of 23)"	-8971	NM_030649	116983	Hs.535257	NM_030649	ENSG00000131584	ACAP3	CENTB5	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 3"	protein-coding
chr5.179383822.+	chr5	179383822	179383823	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-48966	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr9.133588484.+	chr9	133588484	133588485	+	0	NA	promoter-TSS (NM_007313)	promoter-TSS (NM_007313)	-784	NM_007313	25	Hs.431048	NM_005157	ENSG00000097007	ABL1	ABL|JTK7|bcr/abl|c-ABL|p150|v-abl	"c-abl oncogene 1, non-receptor tyrosine kinase"	protein-coding
chr9.37785261.+	chr9	37785261	37785262	+	0	NA	promoter-TSS (NM_016042)	promoter-TSS (NM_016042)	-172	NM_016042	51010	Hs.713483	NM_001002269	ENSG00000107371	EXOSC3	PCH1B|RP11-3J10.8|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10	exosome component 3	protein-coding
chrX.67548229.-	chrX	67548229	67548230	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105070	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr19.34626253.-	chr19	34626253	34626254	-	0	NA	Intergenic	AluJr|SINE|Alu	37099	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr2.74351378.-	chr2	74351378	74351379	-	0	NA	Intergenic	SVA_B|Other|Other	-23661	NM_212552	388962	Hs.61472	NM_001035505	ENSG00000163170	BOLA3	MMDS2	bolA homolog 3 (E. coli)	protein-coding
chr4.1864294.+	chr4	1864294	1864295	+	0	NA	Intergenic	CpG	-6320	NM_012318	3954	Hs.120165	NM_012318	ENSG00000168924	LETM1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding
chr12.49857012.+	chr12	49857012	49857013	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	74055	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr3.95669682.-	chr3	95669682	95669683	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	267645	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr9.66500822.+	chr9	66500822	66500823	+	0	NA	"non-coding (NR_024496, exon 2 of 2)"	"non-coding (NR_024496, exon 2 of 2)"	6553	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr12.96314721.-	chr12	96314721	96314722	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21707	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr9.127626586.-	chr9	127626586	127626587	-	0	NA	Intergenic	AluSx|SINE|Alu	2346	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr14.104887861.+	chr14	104887861	104887862	+	0	NA	Intergenic	Intergenic	-158195	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chrX.144899813.-	chrX	144899813	144899814	-	0	NA	"intron (NM_032539, intron 1 of 4)"	CpG	-466	NM_001144003	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr21.45684313.+	chr21	45684313	45684314	+	0	NA	Intergenic	AluY|SINE|Alu	-2214	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr4.141334747.+	chr4	141334747	141334748	+	0	NA	"intron (NM_004362, intron 1 of 14)"	L1PA2|LINE|L1	14068	NM_001130675	1047	Hs.86368	NM_001130675	ENSG00000153132	CLGN	-	calmegin	protein-coding
chr17.45349568.-	chr17	45349568	45349569	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18360	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr2.218944872.-	chr2	218944872	218944873	-	0	NA	"intron (NR_034176, intron 11 of 13)"	"intron (NR_034176, intron 11 of 13)"	-11134	NM_198483	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
chr11.133939084.-	chr11	133939084	133939085	-	0	NA	"intron (NM_032801, intron 1 of 8)"	CpG	-264	NM_032801	83700	Hs.150718	NM_001205329	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
chr12.79439005.+	chr12	79439005	79439006	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-428	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr7.100291456.-	chr7	100291456	100291457	-	0	NA	Intergenic	CpG	4586	NM_022574	64599	Hs.414396	NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
chr10.8150598.+	chr10	8150598	8150599	+	0	NA	Intergenic	AluY|SINE|Alu	53931	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr1.47809001.-	chr1	47809001	47809002	-	0	NA	"intron (NM_001136140, intron 1 of 4)"	AluSg4|SINE|Alu	-9532	NR_046395	51727	Hs.731647	NM_001136140	ENSG00000162368	CMPK1	CMK|CMPK|UMK|UMP-CMPK|UMPK	"cytidine monophosphate (UMP-CMP) kinase 1, cytosolic"	protein-coding
chr6.111924226.+	chr6	111924226	111924227	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3251	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr4.26862520.+	chr4	26862520	26862521	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	207	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr20.4583278.+	chr20	4583278	4583279	+	0	NA	Intergenic	Intergenic	-83519	NM_001080121	5621	Hs.721670	NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
chr13.111285700.-	chr13	111285700	111285701	-	0	NA	"intron (NR_040103, intron 5 of 9)"	LTR12C|LTR|ERV1	-17769	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chrX.53123450.-	chrX	53123450	53123451	-	0	NA	Intergenic	CpG	-11908	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr17.12456662.-	chr17	12456662	12456663	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3377	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr20.48080601.-	chr20	48080601	48080602	-	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	-18580	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr12.57819345.-	chr12	57819345	57819346	-	0	NA	Intergenic	AluSx1|SINE|Alu	9198	NM_005538	3626	Hs.632722	NM_005538	ENSG00000175189	INHBC	IHBC	"inhibin, beta C"	protein-coding
chr17.46687770.+	chr17	46687770	46687771	+	0	NA	"intron (NM_004502, intron 1 of 1)"	CpG	613	NM_004502	3217	Hs.436181	NM_004502	ENSG00000120087	HOXB7	HHO.C1|HOX2|HOX2C|Hox-2.3	homeobox B7	protein-coding
chr7.128141930.+	chr7	128141930	128141931	+	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	25147	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr17.27070051.-	chr17	27070051	27070052	-	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	972	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chrX.32812457.-	chrX	32812457	32812458	-	0	NA	"intron (NM_000109, intron 7 of 78)"	AluY|SINE|Alu	-225860	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr20.31107856.-	chr20	31107856	31107857	-	0	NA	"intron (NM_001256798, intron 3 of 10)"	AluY|SINE|Alu	36471	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr6.160985680.-	chr6	160985680	160985681	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53524	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr17.2311357.-	chr17	2311357	2311358	-	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	7099	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr1.32122150.-	chr1	32122150	32122151	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11312	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr21.45193229.-	chr21	45193229	45193230	-	0	NA	TTS (NM_000100)	TTS (NM_000100)	-3027	NM_000100	1476	Hs.695	NM_000100		CSTB	CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B (stefin B)	protein-coding
chr5.37382790.+	chr5	37382790	37382791	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3378	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr7.63023259.+	chr7	63023259	63023260	+	0	NA	Intergenic	Intergenic	-58209	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr7.22396744.+	chr7	22396744	22396745	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-211	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr6.108315288.-	chr6	108315288	108315289	-	0	NA	Intergenic	AluSz|SINE|Alu	35806	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr1.150309640.-	chr1	150309640	150309641	-	0	NA	"intron (NM_004698, intron 7 of 15)"	AluY|SINE|Alu	-15712	NM_004698	9129	Hs.11776	NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18	PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)	protein-coding
chr5.128197058.+	chr5	128197058	128197059	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104152	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr5.41712461.+	chr5	41712461	41712462	+	0	NA	Intergenic	AluY|SINE|Alu	158330	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA transferase 1	protein-coding
chr9.89562393.-	chr9	89562393	89562394	-	0	NA	promoter-TSS (NM_002048)	promoter-TSS (NM_002048)	289	NM_002048	2619	Hs.65029	NM_002048	ENSG00000180447	GAS1	-	growth arrest-specific 1	protein-coding
chr1.144932134.-	chr1	144932134	144932135	-	0	NA	promoter-TSS (NM_001002811)	promoter-TSS (NM_001002811)	102	NM_001002811	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr2.43253953.+	chr2	43253953	43253954	+	0	NA	Intergenic	Intergenic	199792	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr4.84864617.+	chr4	84864617	84864618	+	0	NA	Intergenic	SVA_D|Other|Other	407147	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr1.32731916.+	chr1	32731916	32731917	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7796	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr15.23085998.-	chr15	23085998	23085999	-	0	NA	"intron (NM_001142275, intron 1 of 4)"	CpG	-438	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr1.107439594.+	chr1	107439594	107439595	+	0	NA	Intergenic	AluY|SINE|Alu	-159673	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
chr12.100804235.+	chr12	100804235	100804236	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53378	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr2.20424073.+	chr2	20424073	20424074	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	854	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr16.9176147.+	chr16	9176147	9176148	+	0	NA	Intergenic	AluSx|SINE|Alu	-9390	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr20.4066702.+	chr20	4066702	4066703	+	0	NA	Intergenic	AluY|SINE|Alu	-62724	NM_175840	54498	Hs.433337	NM_001270691	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAOH1|SMO	spermine oxidase	protein-coding
chr1.235490681.+	chr1	235490681	235490682	+	0	NA	"5' UTR (NM_001206794, exon 1 of 24)"	"5' UTR (NM_001206794, exon 1 of 24)"	121	NM_001206794	51742	Hs.575782	NM_001206794	ENSG00000054267	ARID4B	BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding
chr1.151473991.-	chr1	151473991	151473992	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	9871	NM_020770	57530	Hs.591464	NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
chr8.78788152.-	chr8	78788152	78788153	-	0	NA	Intergenic	AluY|SINE|Alu	640184	NM_181839	5569	Hs.732129	NM_006823	ENSG00000171033	PKIA	PRKACN1	"protein kinase (cAMP-dependent, catalytic) inhibitor alpha"	protein-coding
chr14.55349955.-	chr14	55349955	55349956	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5044	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr5.14460499.+	chr5	14460499	14460500	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121392	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr19.45206880.-	chr19	45206880	45206881	-	0	NA	"exon (NM_001039213, exon 3 of 7)"	"exon (NM_001039213, exon 3 of 7)"	-4459	NM_001039213	388551	Hs.456381	NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding
chr1.2781140.-	chr1	2781140	2781141	-	0	NA	Intergenic	Intergenic	74910	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr17.57287478.-	chr17	57287478	57287479	-	0	NA	"exon (NM_018149, exon 1 of 4)"	"exon (NM_018149, exon 1 of 4)"	-107	NM_018149	55181	Hs.7296	NM_018149	ENSG00000167447	SMG8	C17orf71	"smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)"	protein-coding
chr12.99288678.+	chr12	99288678	99288679	+	0	NA	promoter-TSS (NM_001204079)	promoter-TSS (NM_001204079)	-4	NM_001204080	56899	Hs.506458	NM_001204065	ENSG00000185046	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chr19.7098869.+	chr19	7098869	7098870	+	0	NA	Intergenic	CpG	29398	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr5.22207044.-	chr5	22207044	22207045	-	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	-64583	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr1.10989832.-	chr1	10989832	10989833	-	0	NA	Intergenic	AluSq|SINE|Alu	-52262	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chrX.22158728.-	chrX	22158728	22158729	-	0	NA	"intron (NM_000444, intron 12 of 21)"	AluSz6|SINE|Alu	-32372	NR_046639	100873942	Hs.633194	NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	miscRNA
chr8.143573140.+	chr8	143573140	143573141	+	0	NA	"intron (NM_001702, intron 16 of 29)"	"intron (NM_001702, intron 16 of 29)"	27763	NM_001702	575	Hs.194654	NM_001702	ENSG00000181790	BAI1	GDAIF	brain-specific angiogenesis inhibitor 1	protein-coding
chr6.160985718.+	chr6	160985718	160985719	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53562	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr4.55034976.+	chr4	55034976	55034977	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60288	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr5.141076253.+	chr5	141076253	141076254	+	0	NA	Intergenic	Intergenic	-14453	NM_022481	64411	Hs.726187	NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	"ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3"	protein-coding
chr6.159416855.+	chr6	159416855	159416856	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4343	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr10.76198277.+	chr10	76198277	76198278	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262030	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr17.22012687.-	chr17	22012687	22012688	-	0	NA	Intergenic	Intergenic	9750	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr15.92290021.-	chr15	92290021	92290022	-	0	NA	Intergenic	AluY|SINE|Alu	106917	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr11.130241839.-	chr11	130241839	130241840	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56700	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr2.178129405.+	chr2	178129405	178129406	+	0	NA	promoter-TSS (NM_001145412)	promoter-TSS (NM_001145412)	454	NM_006164	4780	Hs.744006	NM_001145412	ENSG00000116044	NFE2L2	NRF2	nuclear factor (erythroid-derived 2)-like 2	protein-coding
chr2.240371678.+	chr2	240371678	240371679	+	0	NA	Intergenic	SVA_D|Other|Other	-49035	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr2.131551981.-	chr2	131551981	131551982	-	0	NA	Intergenic	AluY|SINE|Alu	-38117	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr3.1900237.-	chr3	1900237	1900238	-	0	NA	Intergenic	AluSp|SINE|Alu	240313	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr8.144512838.+	chr8	144512838	144512839	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-236	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr14.23517075.-	chr14	23517075	23517076	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5699	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr5.25101011.+	chr5	25101011	25101012	+	0	NA	Intergenic	AluSc|SINE|Alu	-260319	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr17.7951742.-	chr17	7951742	7951743	-	0	NA	"exon (NM_001039131, exon 12 of 12)"	"exon (NM_001039131, exon 12 of 12)"	-9384	NM_001141	247	Hs.111256	NM_001039130	ENSG00000179593	ALOX15B	15-LOX-2	"arachidonate 15-lipoxygenase, type B"	protein-coding
chr12.121338293.+	chr12	121338293	121338294	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3862	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr5.18111651.-	chr5	18111651	18111652	-	0	NA	Intergenic	AluY|SINE|Alu	724232	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr1.226350796.-	chr1	226350796	226350797	-	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	-23627	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr22.46522747.-	chr22	46522747	46522748	-	0	NA	Intergenic	Intergenic	-13181	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chrX.132930065.+	chrX	132930065	132930066	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189608	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr19.647248.+	chr19	647248	647249	+	0	NA	TTS (NM_194460)	TTS (NM_194460)	7322	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr7.1798958.-	chr7	1798958	1798959	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50160	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr7.66480065.+	chr7	66480065	66480066	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18273	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr4.166248518.-	chr4	166248518	166248519	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	300	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.228427871.-	chr1	228427871	228427872	-	0	NA	"intron (NM_001271223, intron 10 of 115)"	AluY|SINE|Alu	26506	NR_073154	574407	Hs.650039	NM_001025495	ENSG00000162913	C1orf145	-	chromosome 1 open reading frame 145	miscRNA
chr2.202092467.-	chr2	202092467	202092468	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5699	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr9.11197007.+	chr9	11197007	11197008	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584284	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr20.4803699.-	chr20	4803699	4803700	-	0	NA	"intron (NM_014737, intron 1 of 11)"	CpG	-592	NM_014737	9770	Hs.631504	NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association (RalGDS/AF-6) domain family member 2	protein-coding
chr2.240402080.+	chr2	240402080	240402081	+	0	NA	Intergenic	Intergenic	-79437	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr16.1034938.-	chr16	1034938	1034939	-	0	NA	"exon (NM_014587, exon 3 of 3)"	"exon (NM_014587, exon 3 of 3)"	-3130	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
chr19.10041349.+	chr19	10041349	10041350	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5721	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr7.100963636.+	chr7	100963636	100963637	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1457	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr10.4887103.-	chr10	4887103	4887104	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18734	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr17.2597898.-	chr17	2597898	2597899	-	0	NA	"intron (NM_015229, intron 16 of 25)"	"intron (NM_015229, intron 16 of 25)"	-17029	NM_015229	23277	Hs.22616	NM_015229	ENSG00000132361	CLUH	CLU1|KIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding
chr7.62939966.-	chr7	62939966	62939967	-	0	NA	Intergenic	AluYf4|SINE|Alu	80547	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr4.163164015.+	chr4	163164015	163164016	+	0	NA	Intergenic	AluY|SINE|Alu	-78829	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr17.78397570.-	chr17	78397570	78397571	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4352	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr21.47403477.-	chr21	47403477	47403478	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1814	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr11.41260592.-	chr11	41260592	41260593	-	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	-220594	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr6.168499150.+	chr6	168499150	168499151	+	0	NA	Intergenic	Intergenic	-19311	NM_024919	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr12.132372550.+	chr12	132372550	132372551	+	0	NA	Intergenic	AluSx|SINE|Alu	-6729	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr5.89746546.-	chr5	89746546	89746547	-	0	NA	Intergenic	AluSz|SINE|Alu	-24039	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr1.937248.+	chr1	937248	937249	+	0	NA	Intergenic	CpG-24	-1696	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr4.132683080.-	chr4	132683080	132683081	-	0	NA	Intergenic	SST1|Satellite|centr	1387390	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr5.178491492.-	chr5	178491492	178491493	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3885	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr2.202092475.+	chr2	202092475	202092476	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5691	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr4.114652876.+	chr4	114652876	114652877	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30207	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr2.242499002.-	chr2	242499002	242499003	-	0	NA	promoter-TSS (NR_033346)	promoter-TSS (NR_033346)	444	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr9.1045399.+	chr9	1045399	1045400	+	0	NA	Intergenic	AluY|SINE|Alu	-4947	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr7.54614213.+	chr7	54614213	54614214	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4194	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr4.31186896.+	chr4	31186896	31186897	+	0	NA	Intergenic	LTR12C|LTR|ERV1	464859	NM_032457	5099	Hs.479439	NM_001173523	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH	protocadherin 7	protein-coding
chr1.1574883.+	chr1	1574883	1574884	+	0	NA	"intron (NM_033486, intron 11 of 19)"	"intron (NM_033486, intron 11 of 19)"	6724	NR_002946	8511	Hs.671760	NR_002946	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
chr16.89034194.+	chr16	89034194	89034195	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9310	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr15.23086489.-	chr15	23086489	23086490	-	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	53	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr8.145831408.-	chr8	145831408	145831409	-	0	NA	"intron (NM_025251, intron 2 of 12)"	"intron (NM_025251, intron 2 of 12)"	-7480	NM_025251	80728	Hs.148988	NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
chrX.133976874.-	chrX	133976874	133976875	-	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	-35651	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr15.41613492.-	chr15	41613492	41613493	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11327	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr3.189635267.-	chr3	189635267	189635268	-	0	NA	Intergenic	AluSz6|SINE|Alu	-87556	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	miscRNA
chr1.33086766.-	chr1	33086766	33086767	-	0	NA	TTS (NM_178547)	TTS (NM_178547)	-29419	NM_178547	339487	Hs.655921	NM_178547		ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
chr5.89746452.-	chr5	89746452	89746453	-	0	NA	Intergenic	AluSp|SINE|Alu	-24133	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr19.16869729.-	chr19	16869729	16869730	-	0	NA	"intron (NM_001007525, intron 6 of 18)"	AluSg|SINE|Alu	-38942	NM_001007525	284434	Hs.406014	NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
chrX.122910262.-	chrX	122910262	122910263	-	0	NA	Intergenic	AluJo|SINE|Alu	43358	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr7.148968308.-	chr7	148968308	148968309	-	0	NA	"intron (NM_001195220, intron 4 of 5)"	AluY|SINE|Alu	-9046	NM_001195220	100289678	Hs.490512	NM_001195220	ENSG00000204946	ZNF783	-	zinc finger family member 783	protein-coding
chr12.100804218.+	chr12	100804218	100804219	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53361	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr12.34354012.-	chr12	34354012	34354013	-	0	NA	Intergenic	AluSz|SINE|Alu	-178796	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.125181295.-	chr2	125181295	125181296	-	0	NA	"intron (NM_130773, intron 4 of 23)"	AluY|SINE|Alu	-398431	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr16.4835180.-	chr16	4835180	4835181	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3218	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr17.2731929.+	chr17	2731929	2731930	+	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	32197	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr6.123144206.+	chr6	123144206	123144207	+	0	NA	Intergenic	Intergenic	34235	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr13.56400612.-	chr13	56400612	56400613	-	0	NA	Intergenic	AluY|SINE|Alu	-652023	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr14.97165180.+	chr14	97165180	97165181	+	0	NA	Intergenic	Intergenic	-98504	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr22.48971475.-	chr22	48971475	48971476	-	0	NA	promoter-TSS (NM_015381)	promoter-TSS (NM_015381)	643	NM_015381	25817	Hs.436854	NM_001082967	ENSG00000219438	FAM19A5	QLLK5208|TAFA-5|TAFA5|UNQ5208	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A5"	protein-coding
chr16.22675579.-	chr16	22675579	22675580	-	0	NA	Intergenic	AluJr|SINE|Alu	54024	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr19.50155852.-	chr19	50155852	50155853	-	0	NA	"exon (NM_021228, exon 7 of 11)"	"exon (NM_021228, exon 7 of 11)"	-10470	NM_021228	58506	Hs.103521	NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD-associated factor 1	protein-coding
chr15.65933257.-	chr15	65933257	65933258	-	0	NA	"intron (NM_004727, intron 4 of 9)"	AluSx1|SINE|Alu	1986	NM_001254740	9187	Hs.173092	NM_001254740	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	"solute carrier family 24 (sodium/potassium/calcium exchanger), member 1"	protein-coding
chr20.13660616.-	chr20	13660616	13660617	-	0	NA	Intergenic	AluY|SINE|Alu	41033	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr8.125234402.+	chr8	125234402	125234403	+	0	NA	Intergenic	AluSx3|SINE|Alu	150538	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr6.126100232.+	chr6	126100232	126100233	+	0	NA	Intergenic	AluY|SINE|Alu	-2075	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr16.440602.-	chr16	440602	440603	-	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	6590	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr17.3792512.-	chr17	3792512	3792513	-	0	NA	"intron (NM_172207, intron 1 of 15)"	"intron (NM_172207, intron 1 of 15)"	-1525	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chrX.47215627.-	chrX	47215627	47215628	-	0	NA	Intergenic	AluY|SINE|Alu	14372	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr19.23474397.+	chr19	23474397	23474398	+	0	NA	Intergenic	AluSx|SINE|Alu	-41225	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr11.68671201.-	chr11	68671201	68671202	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-102	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr16.1821703.+	chr16	1821703	1821704	+	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	7	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr2.202092534.+	chr2	202092534	202092535	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5632	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr19.58310414.+	chr19	58310414	58310415	+	0	NA	Intergenic	AluY|SINE|Alu	15867	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr6.33811478.-	chr6	33811478	33811479	-	0	NA	Intergenic	LTR33|LTR|ERVL	39685	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr3.188566625.+	chr3	188566625	188566626	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323138	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr2.174289361.+	chr2	174289361	174289362	+	0	NA	Intergenic	AluSx|SINE|Alu	69800	NM_145810	83879	Hs.470654	NM_031942	ENSG00000144354	CDCA7	JPO1	cell division cycle associated 7	protein-coding
chr1.85156456.-	chr1	85156456	85156457	-	0	NA	promoter-TSS (NM_001166417)	promoter-TSS (NM_001166417)	216	NM_014021	117178	Hs.22587	NM_001166293	ENSG00000117155	SSX2IP	ADIP	"synovial sarcoma, X breakpoint 2 interacting protein"	protein-coding
chr1.31773674.+	chr1	31773674	31773675	+	0	NA	"intron (NM_016505, intron 1 of 7)"	AluSq2|SINE|Alu	3832	NM_016505	51538	Hs.524094	NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|RP11-266K22.1|pNO40	"zinc finger, CCHC domain containing 17"	protein-coding
chr14.101693726.-	chr14	101693726	101693727	-	0	NA	Intergenic	Intergenic	-157478	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr8.7877770.-	chr8	7877770	7877771	-	0	NA	Intergenic	Intergenic	22727	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr7.5396305.+	chr7	5396305	5396306	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66872	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr1.32731917.+	chr1	32731917	32731918	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7795	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr2.115948306.+	chr2	115948306	115948307	+	0	NA	"intron (NM_001004360, intron 1 of 25)"	HERVIP10F-int|LTR|ERV1	28622	NM_001004360	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr10.135051180.-	chr10	135051180	135051181	-	0	NA	promoter-TSS (NM_014468)	promoter-TSS (NM_014468)	228	NM_014468	27287	Hs.125231	NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
chr6.10074194.-	chr6	10074194	10074195	-	0	NA	Intergenic	LTR12C|LTR|ERV1	338357	NR_033910	100130275	Hs.661431	NR_033910		LOC100130275	-	uncharacterized LOC100130275	miscRNA
chr17.48350757.+	chr17	48350757	48350758	+	0	NA	"intron (NM_001168215, intron 1 of 5)"	CpG	-1031	NM_153229	162461	Hs.224630	NM_001168215	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
chr14.105618902.-	chr14	105618902	105618903	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16259	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chrX.27178518.-	chrX	27178518	27178519	-	0	NA	Intergenic	AluY|SINE|Alu	-302940	NR_002784	139420	Hs.350673	NR_002784		SMEK3P	FLFL3P|smk1	"SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene"	pseudo
chr5.171395353.-	chr5	171395353	171395354	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38524	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr14.105242402.+	chr14	105242402	105242403	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17536	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr8.143373450.-	chr8	143373450	143373451	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93733	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chrX.137770392.-	chrX	137770392	137770393	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20438	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr22.39040968.-	chr22	39040968	39040969	-	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	-11666	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr16.28453700.+	chr16	28453700	28453701	+	0	NA	Intergenic	AluY|SINE|Alu	-15925	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr17.79700910.+	chr17	79700910	79700911	+	0	NA	Intergenic	Intergenic	21644	NM_001270953	1468	Hs.548187	NM_001270888	ENSG00000183048	SLC25A10	DIC	"solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10"	protein-coding
chr19.36211765.-	chr19	36211765	36211766	-	0	NA	"exon (NM_014727, exon 3 of 37)"	"exon (NM_014727, exon 3 of 37)"	-2844	NM_014727	9757	Hs.676457	NM_014727	ENSG00000105663	MLL4	HRX2|KMT2B|MLL2|TRX2|WBP7	myeloid/lymphoid or mixed-lineage leukemia 4	protein-coding
chr3.50701729.+	chr3	50701729	50701730	+	0	NA	Intergenic	AluY|SINE|Alu	-10782	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chrX.133564925.+	chrX	133564925	133564926	+	0	NA	Intergenic	AluSp|SINE|Alu	-29250	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr2.240187909.+	chr2	240187909	240187910	+	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	-39248	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr14.48145408.-	chr14	48145408	48145409	-	0	NA	Intergenic	CpG-6991	1251	NM_001113498	161357	Hs.436380	NM_001113498	ENSG00000139915	MDGA2	MAMDC1|c14_5286	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chr9.135013584.+	chr9	135013584	135013585	+	0	NA	Intergenic	AluSz|SINE|Alu	-23750	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr11.130241740.-	chr11	130241740	130241741	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56799	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr1.3128463.+	chr1	3128463	3128464	+	0	NA	"intron (NM_199454, intron 2 of 16)"	(CGTG)n|Simple_repeat|Simple_repeat	83924	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr17.38400030.+	chr17	38400030	38400031	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24456	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr19.4065770.-	chr19	4065770	4065771	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1046	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr3.42630510.-	chr3	42630510	42630511	-	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	1788	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr9.136006356.+	chr9	136006356	136006357	+	0	NA	"exon (NM_001271774, exon 1 of 18)"	"exon (NM_001271774, exon 1 of 18)"	188	NM_001271774	5900	Hs.106185	NM_001042368	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
chr17.45771299.-	chr17	45771299	45771300	-	0	NA	Intergenic	CpG	1331	NM_014726	9755	Hs.94790	NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
chr7.150699076.+	chr7	150699076	150699077	+	0	NA	"intron (NM_000603, intron 13 of 26)"	"intron (NM_000603, intron 13 of 26)"	8184	NM_001160110	4846	Hs.647092	NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3 (endothelial cell)	protein-coding
chr10.985974.-	chr10	985974	985975	-	0	NA	Intergenic	AluSp|SINE|Alu	8329	NM_015155	23185	Hs.159069	NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	"La ribonucleoprotein domain family, member 4B"	protein-coding
chr3.196619070.+	chr3	196619070	196619071	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24343	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr10.21877203.-	chr10	21877203	21877204	-	0	NA	"intron (NM_004641, intron 4 of 23)"	AluSz|SINE|Alu	-53629	NM_001195626	8028	Hs.30385	NM_001195626	ENSG00000078403	MLLT10	AF10	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10"	protein-coding
chr4.103422390.-	chr4	103422390	103422391	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	96	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr3.160673506.-	chr3	160673506	160673507	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149177	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr14.36986710.+	chr14	36986710	36986711	+	0	NA	"exon (NM_003317, exon 2 of 2)"	"exon (NM_003317, exon 2 of 2)"	2193	NM_003317	7080	Hs.94367	NM_001079668	ENSG00000136352	NKX2-1	BCH|BHC|NK-2|NKX2.1|NKX2A|TEBP|TITF1|TTF-1|TTF1	NK2 homeobox 1	protein-coding
chr20.48703496.+	chr20	48703496	48703497	+	0	NA	"intron (NM_022442, intron 2 of 3)"	AluY|SINE|Alu	26239	NM_001257399	7335	Hs.420529	NM_001032288	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
chr10.28821795.-	chr10	28821795	28821796	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-373	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr19.33887192.+	chr19	33887192	33887193	+	0	NA	"intron (NM_001166056, intron 10 of 12)"	"intron (NM_001166056, intron 10 of 12)"	21762	NM_001252296	1054	Hs.429666	NM_001252296	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	"CCAAT/enhancer binding protein (C/EBP), gamma"	protein-coding
chr17.62972254.+	chr17	62972254	62972255	+	0	NA	promoter-TSS (NR_026903)	promoter-TSS (NR_026903)	-551	NR_026903	201283	Hs.396447	NM_153032	ENSG00000214174	AMZ2P1	-	archaelysin family metallopeptidase 2 pseudogene 1	pseudo
chr12.33592869.+	chr12	33592869	33592870	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-115	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr16.30810986.+	chr16	30810986	30810987	+	0	NA	Intergenic	AluSx|SINE|Alu	-12463	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr1.21893067.+	chr1	21893067	21893068	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57209	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr20.57575079.-	chr20	57575079	57575080	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7230	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr16.723828.+	chr16	723828	723829	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2247	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr7.5125293.-	chr7	5125293	5125294	-	0	NA	Intergenic	Intergenic	-13602	NR_015343	389458	Hs.733005	NM_203393		LOC389458	-	uncharacterized LOC389458	miscRNA
chr17.37078482.+	chr17	37078482	37078483	+	0	NA	TTS (NM_006148)	TTS (NM_006148)	-2939	NR_038847	100505576	Hs.634043	NR_038847		LINC00672	-	long intergenic non-protein coding RNA 672	miscRNA
chr17.40316826.+	chr17	40316826	40316827	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9764	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr19.586965.+	chr19	586965	586966	+	0	NA	Intergenic	L2b|LINE|L2	-2928	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr17.4708675.-	chr17	4708675	4708676	-	0	NA	Intergenic	AluSp|SINE|Alu	1721	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr10.104255200.-	chr10	104255200	104255201	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7312	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr10.99258347.-	chr10	99258347	99258348	-	0	NA	promoter-TSS (NM_024954)	promoter-TSS (NM_024954)	-19	NM_022362	64210	Hs.500721	NM_022362	ENSG00000155229	MMS19	MET18|MMS19L|hMMS19	MMS19 nucleotide excision repair homolog (S. cerevisiae)	protein-coding
chr1.205674959.-	chr1	205674959	205674960	-	0	NA	Intergenic	AluY|SINE|Alu	25329	NM_033102	85414	Hs.278695	NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	"solute carrier family 45, member 3"	protein-coding
chr1.110009910.-	chr1	110009910	110009911	-	0	NA	"intron (NM_001040709, intron 2 of 5)"	CpG-1399	-810	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr17.43028716.-	chr17	43028716	43028717	-	0	NA	Intergenic	AluSp|SINE|Alu	3637	NM_001264573	146909	Hs.135094	NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
chr11.66887556.-	chr11	66887556	66887557	-	0	NA	"intron (NM_012308, intron 1 of 20)"	"intron (NM_012308, intron 1 of 20)"	-816	NR_027473	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr12.106606575.+	chr12	106606575	106606576	+	0	NA	Intergenic	L1PA7|LINE|L1	35138	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr17.66332151.-	chr17	66332151	66332152	-	0	NA	"intron (NM_001267727, intron 2 of 11)"	AluSx1|SINE|Alu	-44515	NM_001267727	22901	Hs.437249	NM_001267727		ARSG	-	arylsulfatase G	protein-coding
chr17.15426418.-	chr17	15426418	15426419	-	0	NA	"intron (NM_145301, intron 5 of 5)"	AluSx3|SINE|Alu	-40527	NR_037924	100533496	Hs.744260	NM_001204478	ENSG00000259024	TVP23C-CDRT4	FAM18B2-CDRT4	TVP23C-CDRT4 readthrough	protein-coding
chr1.210574668.-	chr1	210574668	210574669	-	0	NA	"intron (NM_001170587, intron 4 of 10)"	AluSx1|SINE|Alu	-72028	NM_001170580	55733	Hs.58650	NM_001122834	ENSG00000054392	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
chr11.66997299.+	chr11	66997299	66997300	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10207	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr13.31307219.-	chr13	31307219	31307220	-	0	NA	"intron (NM_001204406, intron 1 of 5)"	AluY|SINE|Alu	2426	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
chr7.22540617.+	chr7	22540617	22540618	+	0	NA	promoter-TSS (NM_001164460)	promoter-TSS (NM_001164460)	-716	NM_207342	256227	Hs.729825	NM_001164460	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
chr11.16894092.+	chr11	16894092	16894093	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133944	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr5.76249487.+	chr5	76249487	76249488	+	0	NA	"exon (NM_001882, exon 2 of 7)"	"exon (NM_001882, exon 2 of 7)"	807	NM_001882	1393	Hs.115617	NM_001882	ENSG00000145708	CRHBP	CRF-BP|CRFBP	corticotropin releasing hormone binding protein	protein-coding
chr10.94857361.+	chr10	94857361	94857362	+	0	NA	Intergenic	Intergenic	23714	NM_000783	1592	Hs.150595	NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	"cytochrome P450, family 26, subfamily A, polypeptide 1"	protein-coding
chr1.9832311.+	chr1	9832311	9832312	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52239	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr22.38498788.+	chr22	38498788	38498789	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7888	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr1.32679375.-	chr1	32679375	32679376	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4680	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr2.225308082.+	chr2	225308082	225308083	+	0	NA	Intergenic	AluY|SINE|Alu	-41371	NM_001122779	79843	Hs.147585	NM_001122779	ENSG00000124019	FAM124B	-	family with sequence similarity 124B	protein-coding
chr16.4835191.-	chr16	4835191	4835192	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3207	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chrX.129091206.+	chrX	129091206	129091207	+	0	NA	Intergenic	CpG	-47958	NM_021946	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
chr9.138663310.-	chr9	138663310	138663311	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69279	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr1.149646807.+	chr1	149646807	149646808	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70354	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr5.24116793.-	chr5	24116793	24116794	-	0	NA	Intergenic	AluY|SINE|Alu	-528292	NM_006727	1008	Hs.92489	NM_006727	ENSG00000040731	CDH10	-	"cadherin 10, type 2 (T2-cadherin)"	protein-coding
chr22.49880386.+	chr22	49880386	49880387	+	0	NA	Intergenic	AluSx1|SINE|Alu	170804	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr4.56284951.+	chr4	56284951	56284952	+	0	NA	"intron (NR_073070, intron 5 of 6)"	AluSx|SINE|Alu	22871	NR_073070	55858	Hs.479766	NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|TMPT27|TPARL	transmembrane protein 165	protein-coding
chr5.125978582.+	chr5	125978582	125978583	+	0	NA	Intergenic	AluY|SINE|Alu	11168	NM_207408	389320	Hs.177983	NM_207408	ENSG00000196900	C5orf48	-	chromosome 5 open reading frame 48	protein-coding
chr19.46156160.-	chr19	46156160	46156161	-	0	NA	Intergenic	AluY|SINE|Alu	7385	NM_001193268	24139	Hs.24178	NM_001193268	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	echinoderm microtubule associated protein like 2	protein-coding
chr12.132372592.-	chr12	132372592	132372593	-	0	NA	Intergenic	AluSx|SINE|Alu	6687	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr21.47343958.-	chr21	47343958	47343959	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57705	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr16.924599.+	chr16	924599	924600	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69156	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr7.128052867.+	chr7	128052867	128052868	+	0	NA	Intergenic	AluY|SINE|Alu	-2831	NM_001142576	3614	Hs.654401	NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|LCA11|RP10|sWSS2608	IMP (inosine 5'-monophosphate) dehydrogenase 1	protein-coding
chr20.61763778.-	chr20	61763778	61763779	-	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	30107	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr16.940336.+	chr16	940336	940337	+	0	NA	"intron (NR_033646, intron 7 of 12)"	"intron (NR_033646, intron 7 of 12)"	80648	NR_033646	64788	Hs.732776	NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
chr2.71357864.-	chr2	71357864	71357865	-	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-420	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chrX.86721072.-	chrX	86721072	86721073	-	0	NA	Intergenic	SVA_C|Other|Other	51643	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr12.96826031.-	chr12	96826031	96826032	-	0	NA	Intergenic	AluSq2|SINE|Alu	31665	NM_001170464	5128	Hs.506415	NM_001170464	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
chr10.38249300.+	chr10	38249300	38249301	+	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	16153	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chr16.70207327.+	chr16	70207327	70207328	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-601	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr6.158402915.-	chr6	158402915	158402916	-	0	NA	promoter-TSS (NM_003898)	promoter-TSS (NM_003898)	-27	NM_003898	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr2.183903200.-	chr2	183903200	183903201	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-29	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr13.85914973.+	chr13	85914973	85914974	+	0	NA	Intergenic	SVA_B|Other|Other	-22765	NR_046989	100874137	Hs.742643	NR_046989	ENSG00000226317	LINC00351	-	long intergenic non-protein coding RNA 351	miscRNA
chr14.76045053.+	chr14	76045053	76045054	+	0	NA	"5' UTR (NM_017791, exon 1 of 10)"	"5' UTR (NM_017791, exon 1 of 10)"	113	NM_017791	55640	Hs.615289	NM_001195283	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH	"feline leukemia virus subgroup C cellular receptor family, member 2"	protein-coding
chr20.39978503.-	chr20	39978503	39978504	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8943	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr4.40014093.-	chr4	40014093	40014094	-	0	NA	Intergenic	AluY|SINE|Alu	34517	NM_001100399	23244	Hs.331431	NM_001100399	ENSG00000121892	PDS5A	SCC-112|SCC112	"PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)"	protein-coding
chr10.103852110.+	chr10	103852110	103852111	+	0	NA	Intergenic	AluSc|SINE|Alu	22613	NM_003893	8861	Hs.454418	NM_001113407	ENSG00000198728	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
chr7.158504069.+	chr7	158504069	158504070	+	0	NA	Intergenic	AluY|SINE|Alu	-6549	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr20.60833003.+	chr20	60833003	60833004	+	0	NA	"intron (NM_014835, intron 2 of 13)"	AluSx1|SINE|Alu	19423	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr12.53645853.+	chr12	53645853	53645854	+	0	NA	promoter-TSS (NM_032889)	promoter-TSS (NM_032889)	-23	NM_032889	84975	Hs.654660	NM_001170790	ENSG00000182544	MFSD5	-	major facilitator superfamily domain containing 5	protein-coding
chr2.102318793.+	chr2	102318793	102318794	+	0	NA	"intron (NM_001242559, intron 2 of 29)"	AluSq2|SINE|Alu	4255	NM_145687	9448	Hs.743950	NM_001242559		MAP4K4	FLH21957|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
chr17.15703056.+	chr17	15703056	15703057	+	0	NA	Intergenic	AluYk4|SINE|Alu	12892	NR_002211	4213	Hs.356135	NR_002211		MEIS3P1	MEIS3|MEIS4|MRG2	Meis homeobox 3 pseudogene 1	pseudo
chr5.178157366.-	chr5	178157366	178157367	-	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	-337	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr5.76691225.+	chr5	76691225	76691226	+	0	NA	"intron (NM_001029853, intron 9 of 20)"	AluY|SINE|Alu	97107	NM_018268	55255	Hs.482573	NM_018268		WDR41	-	WD repeat domain 41	protein-coding
chr3.174240457.+	chr3	174240457	174240458	+	0	NA	Intergenic	AluY|SINE|Alu	-336654	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr2.101924968.+	chr2	101924968	101924969	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	210	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr21.47838762.+	chr21	47838762	47838763	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40100	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr12.33049715.+	chr12	33049715	33049716	+	0	NA	promoter-TSS (NM_004572)	promoter-TSS (NM_004572)	65	NM_004572	5318	Hs.164384	NM_001005242	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
chr14.102109508.-	chr14	102109508	102109509	-	0	NA	Intergenic	AluY|SINE|Alu	-81820	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr2.242479890.-	chr2	242479890	242479891	-	0	NA	Intergenic	Intergenic	18256	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr22.42027275.+	chr22	42027275	42027276	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9980	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr8.144503705.+	chr8	144503705	144503706	+	0	NA	Intergenic	CpG	8897	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.443610.-	chr16	443610	443611	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3582	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr11.2213912.-	chr11	2213912	2213913	-	0	NA	Intergenic	Intergenic	-19619	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr13.50177034.-	chr13	50177034	50177035	-	0	NA	Intergenic	AluY|SINE|Alu	17315	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr17.8342617.-	chr17	8342617	8342618	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3447	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr19.5409956.-	chr19	5409956	5409957	-	0	NA	Intergenic	AluY|SINE|Alu	45470	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr9.34070264.-	chr9	34070264	34070265	-	0	NA	Intergenic	AluSz|SINE|Alu	21317	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr5.122861551.+	chr5	122861551	122861552	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13758	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr2.43459516.+	chr2	43459516	43459517	+	0	NA	"intron (NM_022065, intron 37 of 37)"	AluY|SINE|Alu	5166	NR_027251	100129726	Hs.194480	NM_178529		LOC100129726	-	uncharacterized LOC100129726	miscRNA
chr1.107439616.+	chr1	107439616	107439617	+	0	NA	Intergenic	AluY|SINE|Alu	-159651	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
chr6.163752507.-	chr6	163752507	163752508	-	0	NA	Intergenic	Intergenic	7002	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr15.66993603.+	chr15	66993603	66993604	+	0	NA	Intergenic	CpG	-1071	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr8.57359119.-	chr8	57359119	57359120	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-163	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr12.127898792.+	chr12	127898792	127898793	+	0	NA	Intergenic	Intergenic	-467370	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chrX.91037174.+	chrX	91037174	91037175	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2914	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr4.1400187.-	chr4	1400187	1400188	-	0	NA	Intergenic	CpG	-14847	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr7.23478902.-	chr7	23478902	23478903	-	0	NA	"intron (NM_006547, intron 2 of 14)"	AluYf4|SINE|Alu	-31093	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
chrX.91037176.+	chrX	91037176	91037177	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2916	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr9.131389931.-	chr9	131389931	131389932	-	0	NA	"intron (NM_001195532, intron 48 of 54)"	"intron (NM_001195532, intron 48 of 54)"	-29198	NM_052844	89891	Hs.495240	NM_052844	ENSG00000119333	WDR34	DIC5|bA216B9.3	WD repeat domain 34	protein-coding
chr15.91370819.-	chr15	91370819	91370820	-	0	NA	Intergenic	AluSz|SINE|Alu	41066	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr8.102425413.+	chr8	102425413	102425414	+	0	NA	Intergenic	AluSz|SINE|Alu	44292	NR_002182	83955	Hs.567608	NR_002182	ENSG00000228224	NACAP1	-	nascent-polypeptide-associated complex alpha polypeptide pseudogene 1	pseudo
chr14.99059424.-	chr14	99059424	99059425	-	0	NA	Intergenic	Intergenic	118526	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
chr13.50177072.-	chr13	50177072	50177073	-	0	NA	Intergenic	AluY|SINE|Alu	17353	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr16.58810875.-	chr16	58810875	58810876	-	0	NA	Intergenic	AluSq4|SINE|Alu	42629	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr7.64828106.+	chr7	64828106	64828107	+	0	NA	Intergenic	AluSg|SINE|Alu	-10662	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
chr2.240371697.+	chr2	240371697	240371698	+	0	NA	Intergenic	SVA_D|Other|Other	-49054	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr12.34500196.+	chr12	34500196	34500197	+	0	NA	Intergenic	Intergenic	324980	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.33062841.+	chr19	33062841	33062842	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9253	NM_004708	9141	Hs.443831	NM_004708		PDCD5	TFAR19	programmed cell death 5	protein-coding
chr2.905917.+	chr2	905917	905918	+	0	NA	Intergenic	Intergenic	-40637	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr5.40722739.+	chr5	40722739	40722740	+	0	NA	"intron (NM_012382, intron 4 of 4)"	SVA_B|Other|Other	33333	NM_012382	23548	Hs.621357	NM_012382		TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
chr7.5396267.-	chr7	5396267	5396268	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	-66910	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr11.464554.+	chr11	464554	464555	+	0	NA	"intron (NM_030783, intron 2 of 11)"	CpG	14274	NM_030783	81490	Hs.731700	NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
chr2.42785989.-	chr2	42785989	42785990	-	0	NA	Intergenic	AluSx3|SINE|Alu	9682	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chrX.152916348.+	chrX	152916348	152916349	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8451	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr15.89358731.-	chr15	89358731	89358732	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12057	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr2.43898403.-	chr2	43898403	43898404	-	0	NA	"intron (NM_172069, intron 2 of 29)"	AluSq10|SINE|Alu	-5058	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
chr16.443628.-	chr16	443628	443629	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3564	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr2.32250853.+	chr2	32250853	32250854	+	0	NA	"intron (NM_032574, intron 4 of 4)"	"intron (NM_032574, intron 4 of 4)"	13991	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr17.1226134.-	chr17	1226134	1226135	-	0	NA	Intergenic	AluSx|SINE|Alu	-43177	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr2.58008683.-	chr2	58008683	58008684	-	0	NA	Intergenic	AluY|SINE|Alu	265094	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr16.87360531.-	chr16	87360531	87360532	-	0	NA	Intergenic	Intergenic	9505	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr6.19805016.-	chr6	19805016	19805017	-	0	NA	Intergenic	CpG	32585	NM_001546	3400	Hs.731649	NM_001546		ID4	IDB4|bHLHb27	"inhibitor of DNA binding 4, dominant negative helix-loop-helix protein"	protein-coding
chr8.107613710.-	chr8	107613710	107613711	-	0	NA	"intron (NM_018002, intron 3 of 15)"	MLT1A|LTR|ERVL-MaLR	56326	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr12.131127753.+	chr12	131127753	131127754	+	0	NA	Intergenic	Intergenic	-125343	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr6.64908046.+	chr6	64908046	64908047	+	0	NA	"intron (NM_001142800, intron 31 of 42)"	AluY|SINE|Alu	551615	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
chr17.1165710.-	chr17	1165710	1165711	-	0	NA	Intergenic	AluSg|SINE|Alu	8148	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr15.91370798.+	chr15	91370798	91370799	+	0	NA	Intergenic	Intergenic	-41087	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chrX.23801539.+	chrX	23801539	23801540	+	0	NA	"intron (NR_027783, intron 1 of 6)"	CpG	264	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr19.47364563.+	chr19	47364563	47364564	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-10360	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr13.89907304.-	chr13	89907304	89907305	-	0	NA	Intergenic	AluSx1|SINE|Alu	-309363	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	miscRNA
chr19.586982.+	chr19	586982	586983	+	0	NA	Intergenic	L2b|LINE|L2	-2911	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr16.53447670.+	chr16	53447670	53447671	+	0	NA	Intergenic	AluJb|SINE|Alu	-20681	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr18.33877711.-	chr18	33877711	33877712	-	0	NA	promoter-TSS (NM_025135)	promoter-TSS (NM_025135)	-9	NM_025135	80206	Hs.630884	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
chr10.35336429.-	chr10	35336429	35336430	-	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	-26829	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr10.45240291.+	chr10	45240291	45240292	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166473	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr12.133007605.+	chr12	133007605	133007606	+	0	NA	Intergenic	Intergenic	-59552	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr12.109137820.-	chr12	109137820	109137821	-	0	NA	Intergenic	AluSg|SINE|Alu	12494	NM_014325	23603	Hs.330384	NM_001105237	ENSG00000110880	CORO1C	HCRNN4	"coronin, actin binding protein, 1C"	protein-coding
chr19.4612642.-	chr19	4612642	4612643	-	0	NA	Intergenic	AluSx1|SINE|Alu	26885	NM_152362	126282	Hs.465643	NM_001167942	ENSG00000185361	TNFAIP8L1	TIPE1	"tumor necrosis factor, alpha-induced protein 8-like 1"	protein-coding
chr19.47364613.+	chr19	47364613	47364614	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10410	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr1.17034302.+	chr1	17034302	17034303	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12350	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr7.66480048.-	chr7	66480048	66480049	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18256	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr18.63211105.-	chr18	63211105	63211106	-	0	NA	Intergenic	AluY|SINE|Alu	206383	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr15.63229213.-	chr15	63229213	63229214	-	0	NA	Intergenic	AluSp|SINE|Alu	105625	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr14.102101576.+	chr14	102101576	102101577	+	0	NA	Intergenic	CpG	73888	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr16.3733145.-	chr16	3733145	3733146	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30205	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr10.8150602.+	chr10	8150602	8150603	+	0	NA	Intergenic	AluY|SINE|Alu	53935	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr20.46019413.+	chr20	46019413	46019414	+	0	NA	Intergenic	AluY|SINE|Alu	-33939	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr16.1807951.+	chr16	1807951	1807952	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13759	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr19.38836213.+	chr19	38836213	38836214	+	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	9770	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr20.36531144.+	chr20	36531144	36531145	+	0	NA	promoter-TSS (NM_080607)	promoter-TSS (NM_080607)	-355	NM_080607	128434	Hs.517029	NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
chr2.115918928.-	chr2	115918928	115918929	-	0	NA	promoter-TSS (NM_001004360)	promoter-TSS (NM_001004360)	8	NR_036580	389023	Hs.97540	NR_036580	ENSG00000235026	LOC389023	-	uncharacterized LOC389023	miscRNA
chr10.17622251.-	chr10	17622251	17622252	-	0	NA	Intergenic	AluY|SINE|Alu	-37122	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr5.501532.-	chr5	501532	501533	-	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	-23017	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr19.663032.+	chr19	663032	663033	+	0	NA	"intron (NM_194460, intron 1 of 8)"	CpG	201	NM_194460	55658	Hs.69554	NM_194460	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
chr7.936451.+	chr7	936451	936452	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20260	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr3.53225248.+	chr3	53225248	53225249	+	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	30025	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr2.242480062.-	chr2	242480062	242480063	-	0	NA	Intergenic	Intergenic	18084	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr6.55775073.+	chr6	55775073	55775074	+	0	NA	Intergenic	SVA_D|Other|Other	-34698	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr2.202092469.-	chr2	202092469	202092470	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5697	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr17.29255167.+	chr17	29255167	29255168	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6413	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr19.45852821.+	chr19	45852821	45852822	+	0	NA	"exon (NM_177417, exon 8 of 13)"	"exon (NM_177417, exon 8 of 13)"	8823	NM_177417	147700	Hs.298079	NM_177417	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
chr13.59346909.-	chr13	59346909	59346910	-	0	NA	Intergenic	AluY|SINE|Alu	-1141120	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr14.101892591.+	chr14	101892591	101892592	+	0	NA	Intergenic	AluY|SINE|Alu	129422	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr17.65335473.+	chr17	65335473	65335474	+	0	NA	Intergenic	AluSx|SINE|Alu	27248	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr20.60624001.+	chr20	60624001	60624002	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16865	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr5.178491498.+	chr5	178491498	178491499	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	3891	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr16.29422157.-	chr16	29422157	29422158	-	0	NA	Intergenic	AluSx|SINE|Alu	38509	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr1.32731840.+	chr1	32731840	32731841	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7872	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr1.153961807.+	chr1	153961807	153961808	+	0	NA	Intergenic	AluY|SINE|Alu	-1432	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr1.32122152.-	chr1	32122152	32122153	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11314	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr22.30117159.+	chr22	30117159	30117160	+	0	NA	"intron (NM_182527, intron 1 of 4)"	CpG	815	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
chr9.10974550.+	chr9	10974550	10974551	+	0	NA	Intergenic	L1PBa|LINE|L1	-361827	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chrX.86721041.+	chrX	86721041	86721042	+	0	NA	Intergenic	SVA_C|Other|Other	-51674	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr14.48237266.-	chr14	48237266	48237267	-	0	NA	"intron (NR_039996, intron 2 of 2)"	LTR16A|LTR|ERVL	6959	NR_037503	100500919		NR_037503	ENSG00000263945	MIR548Y	-	microRNA 548y	miscRNA
chrX.64114064.+	chrX	64114064	64114065	+	0	NA	Intergenic	AluY|SINE|Alu	82349	NM_018684	55906	Hs.28249	NM_001178032		ZC4H2	HCA127|KIAA1166	"zinc finger, C4H2 domain containing"	protein-coding
chr6.167607692.-	chr6	167607692	167607693	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23611	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr15.60696631.+	chr15	60696631	60696632	+	0	NA	Intergenic	Intergenic	-6446	NM_004039	302	Hs.511605	NM_001002857	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
chr19.17277120.-	chr19	17277120	17277121	-	0	NA	"intron (NM_004145, intron 10 of 39)"	AluSx|SINE|Alu	49035	NM_018467	55850	Hs.16187	NM_018467	ENSG00000053501	USE1	P31|SLT1	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding
chrX.118059392.-	chrX	118059392	118059393	-	0	NA	Intergenic	AluSc8|SINE|Alu	49321	NM_001031855	79836	Hs.144266	NM_001031855	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
chr8.609576.+	chr8	609576	609577	+	0	NA	Intergenic	Intergenic	71650	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr12.112161141.+	chr12	112161141	112161142	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37284	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr10.6985540.+	chr10	6985540	6985541	+	0	NA	Intergenic	AluSx1|SINE|Alu	163980	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr11.63864543.-	chr11	63864543	63864544	-	0	NA	"intron (NM_014067, intron 3 of 10)"	"intron (NM_014067, intron 3 of 10)"	6819	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	-	fibronectin leucine rich transmembrane protein 1	protein-coding
chr2.19132833.-	chr2	19132833	19132834	-	0	NA	Intergenic	AluYk4|SINE|Alu	361987	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr2.70199616.-	chr2	70199616	70199617	-	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	10219	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr1.8021858.-	chr1	8021858	8021859	-	0	NA	"intron (NM_007262, intron 1 of 6)"	CpG	-144	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr21.26998581.+	chr21	26998581	26998582	+	0	NA	Intergenic	AluSz|SINE|Alu	-13013	NM_021219	58494	Hs.517227	NM_001270408	ENSG00000154721	JAM2	C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM	junctional adhesion molecule 2	protein-coding
chr16.88258026.+	chr16	88258026	88258027	+	0	NA	Intergenic	Intergenic	-235853	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr13.82029622.-	chr13	82029622	82029623	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114536	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr9.88491250.-	chr9	88491250	88491251	-	0	NA	Intergenic	AluYc|SINE|Alu	64807	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr2.136760855.+	chr2	136760855	136760856	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17633	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr16.3733096.-	chr16	3733096	3733097	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30156	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr20.21684124.+	chr20	21684124	21684125	+	0	NA	Intergenic	CpG	-2173	NM_001257096	5075	Hs.122310	NM_001257096		PAX1	HUP48	paired box 1	protein-coding
chr22.29760783.+	chr22	29760783	29760784	+	0	NA	"intron (NM_001127, intron 2 of 22)"	AluSx|SINE|Alu	23789	NM_001127	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	"adaptor-related protein complex 1, beta 1 subunit"	protein-coding
chr17.4708658.+	chr17	4708658	4708659	+	0	NA	Intergenic	AluSp|SINE|Alu	-1738	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr10.133055806.-	chr10	133055806	133055807	-	0	NA	"intron (NM_174937, intron 4 of 11)"	"intron (NM_174937, intron 4 of 11)"	-54178	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr6.25384354.+	chr6	25384354	25384355	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104698	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr11.849569.+	chr11	849569	849570	+	0	NA	"intron (NM_001025239, intron 2 of 7)"	CpG	5123	NM_001025237	7106	Hs.654836	NM_001025234	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
chr14.102954964.+	chr14	102954964	102954965	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21164	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr9.137594104.-	chr9	137594104	137594105	-	0	NA	"intron (NM_000093, intron 4 of 65)"	"intron (NM_000093, intron 4 of 65)"	-60452	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr8.56758293.+	chr8	56758293	56758294	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34093	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr3.37052327.+	chr3	37052327	37052328	+	0	NA	"intron (NM_001258271, intron 6 of 16)"	AluSx|SINE|Alu	17059	NM_001167618	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	"mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)"	protein-coding
chr6.137113616.+	chr6	137113616	137113617	+	0	NA	promoter-TSS (NM_005923)	promoter-TSS (NM_005923)	40	NM_005923	4217	Hs.186486	NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
chrX.102848970.-	chrX	102848970	102848971	-	0	NA	Intergenic	AluY|SINE|Alu	-8551	NM_001006937	79921	Hs.194329	NM_001006935	ENSG00000133142	TCEAL4	NPD017	transcription elongation factor A (SII)-like 4	protein-coding
chr19.40422039.-	chr19	40422039	40422040	-	0	NA	"intron (NM_003890, intron 4 of 35)"	AluSx|SINE|Alu	-18494	NM_003890	8857	Hs.111732	NM_003890	ENSG00000090920	FCGBP	FC(GAMMA)BP	Fc fragment of IgG binding protein	protein-coding
chr20.20350335.+	chr20	20350335	20350336	+	0	NA	"exon (NM_002196, exon 1 of 1)"	"exon (NM_002196, exon 1 of 1)"	1570	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	insulinoma-associated 1	protein-coding
chr15.63852384.-	chr15	63852384	63852385	-	0	NA	"intron (NR_046341, intron 8 of 15)"	AluSx1|SINE|Alu	37168	NM_203373	283807	Hs.656997	NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine-rich repeat protein 22	protein-coding
chr1.227982874.+	chr1	227982874	227982875	+	0	NA	Intergenic	Intergenic	-20544	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr2.11305624.-	chr2	11305624	11305625	-	0	NA	"intron (NM_152391, intron 4 of 6)"	SVA_C|Other|Other	-10084	NM_152391	130814	Hs.274415	NM_152391	ENSG00000162976	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
chr3.32863316.+	chr3	32863316	32863317	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3806	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr22.49428515.-	chr22	49428515	49428516	-	0	NA	Intergenic	Intergenic	-165933	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr4.79349639.+	chr4	79349639	79349640	+	0	NA	"intron (NM_025074, intron 35 of 73)"	AluY|SINE|Alu	-123103	NM_005139	306	Hs.480042	NM_005139	ENSG00000138772	ANXA3	ANX3	annexin A3	protein-coding
chr11.12841274.+	chr11	12841274	12841275	+	0	NA	"intron (NM_021961, intron 3 of 12)"	AluY|SINE|Alu	145305	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chrX.48703098.-	chrX	48703098	48703099	-	0	NA	Intergenic	AluSx|SINE|Alu	9062	NM_013271	27344	Hs.522640	NM_013271	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
chr1.179441203.-	chr1	179441203	179441204	-	0	NA	"intron (NR_073544, intron 16 of 25)"	AluSx3|SINE|Alu	-103881	NM_014625	7827	Hs.412710	NM_014625	ENSG00000116218	NPHS2	PDCN|SRN1	"nephrosis 2, idiopathic, steroid-resistant (podocin)"	protein-coding
chr8.43403638.+	chr8	43403638	43403639	+	0	NA	Intergenic	GSATX|Satellite|centr	256053	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr2.126070147.+	chr2	126070147	126070148	+	0	NA	Intergenic	MER52A|LTR|ERV1	1287283	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr17.33545294.+	chr17	33545294	33545295	+	0	NA	Intergenic	AluSz6|SINE|Alu	-23882	NM_152462	146861	Hs.514814	NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	"solute carrier family 35, member G3"	protein-coding
chr7.23478892.-	chr7	23478892	23478893	-	0	NA	"intron (NM_006547, intron 2 of 14)"	AluYf4|SINE|Alu	-31103	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
chrX.24206039.+	chrX	24206039	24206040	+	0	NA	"intron (NM_001178084, intron 3 of 7)"	AluSg|SINE|Alu	38185	NM_003410	7543	Hs.336681	NM_001178084	ENSG00000005889	ZFX	ZNF926	"zinc finger protein, X-linked"	protein-coding
chr8.128765048.+	chr8	128765048	128765049	+	0	NA	Intergenic	AluSx1|SINE|Alu	16733	NM_002467	4609	Hs.202453	NM_002467	ENSG00000136997	MYC	MRTL|bHLHe39|c-Myc	v-myc myelocytomatosis viral oncogene homolog (avian)	protein-coding
chr19.6196952.-	chr19	6196952	6196953	-	0	NA	Intergenic	AluY|SINE|Alu	-61242	NM_030924	81616	Hs.465720	NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
chr1.6471020.-	chr1	6471020	6471021	-	0	NA	Intergenic	AluSz|SINE|Alu	-8959	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr7.6677417.-	chr7	6677417	6677418	-	0	NA	Intergenic	CpG	-21890	NM_017560	54753	Hs.592170	NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
chr20.39978521.-	chr20	39978521	39978522	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8961	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr8.3500945.-	chr8	3500945	3500946	-	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	-1351383	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr17.79071334.+	chr17	79071334	79071335	+	0	NA	"intron (NM_017451, intron 6 of 14)"	"intron (NM_017451, intron 6 of 14)"	27839	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr4.3573872.+	chr4	3573872	3573873	+	0	NA	Intergenic	Intergenic	-4724	NR_040045	285492	Hs.145563	NM_173661		FLJ35424	-	uncharacterized FLJ35424	miscRNA
chr9.861776.+	chr9	861776	861777	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20086	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr8.107613684.+	chr8	107613684	107613685	+	0	NA	"intron (NM_018002, intron 3 of 15)"	MLT1A|LTR|ERVL-MaLR	-56352	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr8.120878235.+	chr8	120878235	120878236	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7665	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr12.133366789.+	chr12	133366789	133366790	+	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	-28338	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr10.17622294.-	chr10	17622294	17622295	-	0	NA	Intergenic	AluY|SINE|Alu	-37079	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr17.45078375.+	chr17	45078375	45078376	+	0	NA	Intergenic	AluSg4|SINE|Alu	-21761	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr5.37295980.-	chr5	37295980	37295981	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46450	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr6.21897079.+	chr6	21897079	21897080	+	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	230404	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr6.34759899.+	chr6	34759899	34759900	+	0	NA	"5' UTR (NM_017754, exon 1 of 21)"	"5' UTR (NM_017754, exon 1 of 21)"	105	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr22.30781366.-	chr22	30781366	30781367	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	-1936	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr6.86303955.+	chr6	86303955	86303956	+	0	NA	promoter-TSS (NM_020468)	promoter-TSS (NM_020468)	-326	NM_020468	57231	Hs.485871	NM_020468	ENSG00000135317	SNX14	RGS-PX2	sorting nexin 14	protein-coding
chr20.35737796.-	chr20	35737796	35737797	-	0	NA	"intron (NM_152503, intron 21 of 23)"	AluSq10|SINE|Alu	13386	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding
chr10.135192268.+	chr10	135192268	135192269	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-473	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr11.125035497.-	chr11	125035497	125035498	-	0	NA	"intron (NM_022062, intron 1 of 12)"	CpG	-938	NM_022062	63876	Hs.278564	NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
chr19.41868047.-	chr19	41868047	41868048	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1824	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr18.3262390.+	chr18	3262390	3262391	+	0	NA	promoter-TSS (NM_001144945)	promoter-TSS (NM_001144945)	-221	NM_001144944	103910	Hs.464472	NM_001144946	ENSG00000118680	MYL12B	MLC-B|MRLC2	"myosin, light chain 12B, regulatory"	protein-coding
chr17.38194730.-	chr17	38194730	38194731	-	0	NA	"intron (NM_014815, intron 3 of 25)"	AluSc|SINE|Alu	10832	NR_102369	101340251		NR_102369		SNORD124	-	"small nucleolar RNA, C/D box 124"	snoRNA
chr2.1166122.-	chr2	1166122	1166123	-	0	NA	"intron (NM_018968, intron 7 of 16)"	"intron (NM_018968, intron 7 of 16)"	-219568	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr7.532136.+	chr7	532136	532137	+	0	NA	Intergenic	Intergenic	27345	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr10.135031507.+	chr10	135031507	135031508	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12271	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr19.1871366.-	chr19	1871366	1871367	-	0	NA	Intergenic	Intergenic	7802	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr5.86907780.+	chr5	86907780	86907781	+	0	NA	Intergenic	AluY|SINE|Alu	-198930	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr15.34527906.-	chr15	34527906	34527907	-	0	NA	"intron (NM_133647, intron 23 of 24)"	AluSq2|SINE|Alu	-10661	NM_016454	51234	Hs.250905	NM_016454	ENSG00000128463	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
chr2.91874351.+	chr2	91874351	91874352	+	0	NA	Intergenic	CpG	-26376	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr3.189144187.+	chr3	189144187	189144188	+	0	NA	Intergenic	AluSx|SINE|Alu	-185804	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	miscRNA
chr13.114306340.+	chr13	114306340	114306341	+	0	NA	"intron (NM_000705, intron 4 of 6)"	"intron (NM_000705, intron 4 of 6)"	6173	NM_000705	496	Hs.434202	NM_000705	ENSG00000186009	ATP4B	ATP6B	"ATPase, H+/K+ exchanging, beta polypeptide"	protein-coding
chr20.1317916.-	chr20	1317916	1317917	-	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	8037	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr8.86574474.+	chr8	86574474	86574475	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	268	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr11.66997296.-	chr11	66997296	66997297	-	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	10210	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr7.158671013.-	chr7	158671013	158671014	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21744	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chrX.79776852.-	chrX	79776852	79776853	-	0	NA	Intergenic	L1P3|LINE|L1	-100906	NM_152630	169966	Hs.367959	NM_001170574	ENSG00000174016	FAM46D	CT1.26|CT112	"family with sequence similarity 46, member D"	protein-coding
chr22.51001368.+	chr22	51001368	51001369	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-40	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr10.26961168.+	chr10	26961168	26961169	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25427	NM_014317	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1	"prenyl (decaprenyl) diphosphate synthase, subunit 1"	protein-coding
chr6.34770192.-	chr6	34770192	34770193	-	0	NA	"intron (NM_017754, intron 1 of 20)"	AluSx1|SINE|Alu	-10398	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr16.33293927.-	chr16	33293927	33293928	-	0	NA	Intergenic	Intergenic	-4775	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr3.46792414.+	chr3	46792414	46792415	+	0	NA	Intergenic	CpG	-6169	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr8.22594696.-	chr8	22594696	22594697	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43881	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr18.29729789.-	chr18	29729789	29729790	-	0	NA	Intergenic	AluSp|SINE|Alu	40198	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr10.21183605.-	chr10	21183605	21183606	-	0	NA	"intron (NM_006393, intron 2 of 27)"	AluY|SINE|Alu	-2926	NM_006393	10529	Hs.5025	NM_001173484	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding
chr6.165205821.+	chr6	165205821	165205822	+	0	NA	Intergenic	AluYb8|SINE|Alu	517290	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr4.174023376.-	chr4	174023376	174023377	-	0	NA	Intergenic	Harlequin-int|LTR|ERV1	66528	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
chr12.118079856.+	chr12	118079856	118079857	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280249	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr12.132372575.+	chr12	132372575	132372576	+	0	NA	Intergenic	AluSx|SINE|Alu	-6704	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr20.45935914.-	chr20	45935914	45935915	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11332	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr16.71414364.+	chr16	71414364	71414365	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21748	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr2.204121184.+	chr2	204121184	204121185	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18020	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr11.65990725.+	chr11	65990725	65990726	+	0	NA	"intron (NM_018026, intron 10 of 23)"	AluSq2|SINE|Alu	-34040	NM_001134775	64837	Hs.280792	NM_001134774	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
chr5.79331229.+	chr5	79331229	79331230	+	0	NA	promoter-TSS (NM_003248)	promoter-TSS (NM_003248)	59	NM_003248	7060	Hs.211426	NM_003248	ENSG00000113296	THBS4	TSP4	thrombospondin 4	protein-coding
chr7.77452582.-	chr7	77452582	77452583	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16865	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr13.113951735.+	chr13	113951735	113951736	+	0	NA	"5' UTR (NM_005561, exon 1 of 9)"	"5' UTR (NM_005561, exon 1 of 9)"	266	NM_005561	3916	Hs.494419	NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal-associated membrane protein 1	protein-coding
chr9.2622819.-	chr9	2622819	2622820	-	0	NA	promoter-TSS (NR_015375)	promoter-TSS (NR_015375)	446	NR_015375	401491	Hs.416043	NR_015375	ENSG00000236404	FLJ35024	-	uncharacterized LOC401491	miscRNA
chr22.51001321.+	chr22	51001321	51001322	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	7	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.73004536.-	chr1	73004536	73004537	-	0	NA	Intergenic	Intergenic	256259	NM_173808	257194	Hs.146542	NM_173808	ENSG00000172260	NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
chr3.82554685.-	chr3	82554685	82554686	-	0	NA	Intergenic	MER52A|LTR|ERV1	743735	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr6.106442911.+	chr6	106442911	106442912	+	0	NA	Intergenic	CpG	-91284	NM_001198	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	"PR domain containing 1, with ZNF domain"	protein-coding
chr2.47249101.-	chr2	47249101	47249102	-	0	NA	"exon (NM_020458, exon 12 of 20)"	"exon (NM_020458, exon 12 of 20)"	80107	NM_001171511	90411	Hs.662152	NM_001171506	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
chr19.1663618.+	chr19	1663618	1663619	+	0	NA	Intergenic	AluSp|SINE|Alu	-11290	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr14.71374356.-	chr14	71374356	71374357	-	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	-234	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr6.105414631.+	chr6	105414631	105414632	+	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	9708	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr12.6514943.-	chr12	6514943	6514944	-	0	NA	Intergenic	AluSx|SINE|Alu	-21744	NM_002342	4055	Hs.1116	NM_001270987	ENSG00000111321	LTBR	CD18|D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	"lymphotoxin beta receptor (TNFR superfamily, member 3)"	protein-coding
chr1.117312777.-	chr1	117312777	117312778	-	0	NA	TTS (NM_001767)	TTS (NM_001767)	-15691	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr1.117312748.-	chr1	117312748	117312749	-	0	NA	TTS (NM_001767)	TTS (NM_001767)	-15662	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr22.49812458.+	chr22	49812458	49812459	+	0	NA	Intergenic	CpG	238732	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr5.68358798.-	chr5	68358798	68358799	-	0	NA	Intergenic	SVA_D|Other|Other	30978	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr18.67270921.-	chr18	67270921	67270922	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202637	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr11.66008385.+	chr11	66008385	66008386	+	0	NA	"intron (NM_018026, intron 21 of 23)"	"intron (NM_018026, intron 21 of 23)"	-16380	NM_001134775	64837	Hs.280792	NM_001134774	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
chr6.25384251.+	chr6	25384251	25384252	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104595	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr21.44478139.-	chr21	44478139	44478140	-	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	-17901	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr17.78559336.+	chr17	78559336	78559337	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40711	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr2.10198517.+	chr2	10198517	10198518	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14145	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr3.13876366.-	chr3	13876366	13876367	-	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	-45252	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr1.59042000.-	chr1	59042000	59042001	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1166	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr1.121484514.-	chr1	121484514	121484515	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-223604	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr5.170687219.+	chr5	170687219	170687220	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49069	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr6.123144110.-	chr6	123144110	123144111	-	0	NA	Intergenic	AluY|SINE|Alu	-34139	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr2.223163354.+	chr2	223163354	223163355	+	0	NA	"5' UTR (NM_181460, exon 1 of 9)"	"5' UTR (NM_181460, exon 1 of 9)"	361	NM_181457	5077	Hs.42146	NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|WS1|WS3	paired box 3	protein-coding
chr22.51001371.-	chr22	51001371	51001372	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	43	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr2.101214309.-	chr2	101214309	101214310	-	0	NA	Intergenic	AluY|SINE|Alu	-34891	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr1.2260085.-	chr1	2260085	2260086	-	0	NA	"intron (NM_024848, intron 12 of 13)"	"intron (NM_024848, intron 12 of 13)"	-24015	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr3.88595882.+	chr3	88595882	88595883	+	0	NA	Intergenic	AluSc8|SINE|Alu	-396866	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr2.70416464.-	chr2	70416464	70416465	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1687	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr12.50448246.-	chr12	50448246	50448247	-	0	NA	Intergenic	AluSx|SINE|Alu	3174	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr7.128337481.-	chr7	128337481	128337482	-	0	NA	Intergenic	Intergenic	17962	NM_032599	84691	Hs.732440	NM_032599	ENSG00000135248	FAM71F1	FAM137A|NYD-SP18	"family with sequence similarity 71, member F1"	protein-coding
chr3.123987822.-	chr3	123987822	123987823	-	0	NA	"exon (NM_003947, exon 5 of 34)"	"exon (NM_003947, exon 5 of 34)"	-136046	NR_049798	100847021		NR_049798		MIR5002	-	microRNA 5002	miscRNA
chr2.191771949.+	chr2	191771949	191771950	+	0	NA	"intron (NM_001256310, intron 6 of 14)"	"intron (NM_001256310, intron 6 of 14)"	26402	NM_014905	2744	Hs.737608	NM_001256310	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
chr17.1633851.-	chr17	1633851	1633852	-	0	NA	"intron (NM_152348, intron 3 of 10)"	"intron (NM_152348, intron 3 of 10)"	-5726	NM_001163809	124997	Hs.234572	NM_001163673	ENSG00000167716	WDR81	CAMRQ2	WD repeat domain 81	protein-coding
chr15.69859911.-	chr15	69859911	69859912	-	0	NA	"intron (NR_026979, intron 4 of 4)"	LTR12C|LTR|ERV1	-5852	NR_026979	145837	Hs.737088	NR_026979		LOC145837	-	uncharacterized LOC145837	miscRNA
chrX.132930127.-	chrX	132930127	132930128	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189546	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr22.20137576.+	chr22	20137576	20137577	+	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	-145	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr6.165205818.-	chr6	165205818	165205819	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517293	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr16.84754597.-	chr16	84754597	84754598	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	-21042	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr15.90118934.-	chr15	90118934	90118935	-	0	NA	"exon (NM_152259, exon 1 of 22)"	"exon (NM_152259, exon 1 of 22)"	-116	NM_152259	90381	Hs.441708	NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1-interacting checkpoint and replication regulator	protein-coding
chr2.64739156.-	chr2	64739156	64739157	-	0	NA	Intergenic	SVA_F|Other|Other	12283	NM_001002243	54812	Hs.655167	NM_001002243	ENSG00000119844	AFTPH	Nbla10388	aftiphilin	protein-coding
chr6.42751367.-	chr6	42751367	42751368	-	0	NA	Intergenic	CpG	37427	NM_015349	23506	Hs.658033	NM_015349	ENSG00000112624	GLTSCR1L	KIAA0240	GLTSCR1-like	protein-coding
chr1.23037401.-	chr1	23037401	23037402	-	0	NA	promoter-TSS (NM_004442)	promoter-TSS (NM_004442)	-70	NM_017449	2048	Hs.523329	NM_004442	ENSG00000133216	EPHB2	CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
chrX.19461210.+	chrX	19461210	19461211	+	0	NA	"intron (NM_001001671, intron 6 of 28)"	AluSz|SINE|Alu	72169	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr14.101189450.+	chr14	101189450	101189451	+	0	NA	Intergenic	Intergenic	-3752	NM_003836	8788	Hs.533717	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta-like 1 homolog (Drosophila)	protein-coding
chr11.1266507.+	chr11	1266507	1266508	+	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	22212	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr22.20256050.-	chr22	20256050	20256051	-	0	NA	promoter-TSS (NM_023004)	promoter-TSS (NM_023004)	234	NM_023004	65078	Hs.30868	NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
chr4.1721019.+	chr4	1721019	1721020	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	2065	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr6.163752509.-	chr6	163752509	163752510	-	0	NA	Intergenic	Intergenic	7004	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr1.150467528.+	chr1	150467528	150467529	+	0	NA	"intron (NR_073513, intron 5 of 13)"	AluYf4|SINE|Alu	7688	NR_073514	80222	Hs.288974	NM_001271895	ENSG00000143374	TARS2	TARSL1|thrRS	"threonyl-tRNA synthetase 2, mitochondrial (putative)"	protein-coding
chr5.1009208.-	chr5	1009208	1009209	-	0	NA	"intron (NM_001271082, intron 1 of 10)"	CpG	-131	NM_001271082	85409	Hs.240951	NM_001271082	ENSG00000145506	NKD2	Naked2	naked cuticle homolog 2 (Drosophila)	protein-coding
chr6.126111980.-	chr6	126111980	126111981	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-71	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr22.24237223.-	chr22	24237223	24237224	-	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	-658	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr8.143698222.-	chr8	143698222	143698223	-	0	NA	Intergenic	Intergenic	2389	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr5.18111527.-	chr5	18111527	18111528	-	0	NA	Intergenic	AluY|SINE|Alu	724108	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr12.49516398.-	chr12	49516398	49516399	-	0	NA	Intergenic	AluY|SINE|Alu	-8906	NM_006082	10376	Hs.524390	NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	"tubulin, alpha 1b"	protein-coding
chr11.5315848.-	chr11	5315848	5315849	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7328	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr17.38239332.+	chr17	38239332	38239333	+	0	NA	"intron (NM_199334, intron 4 of 8)"	AluY|SINE|Alu	17646	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr3.8721285.+	chr3	8721285	8721286	+	0	NA	Intergenic	Intergenic	-27521	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr8.609267.-	chr8	609267	609268	-	0	NA	Intergenic	Intergenic	-71959	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr6.33806250.+	chr6	33806250	33806251	+	0	NA	Intergenic	Intergenic	-34457	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr9.6608173.-	chr9	6608173	6608174	-	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	-37519	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr7.25609184.-	chr7	25609184	25609185	-	0	NA	Intergenic	AluSz|SINE|Alu	-271446	NR_046486	100873753		NR_046486		RNU6-16	-	"RNA, U6 small nuclear 16"	snRNA
chr11.68671224.+	chr11	68671224	68671225	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	79	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr5.134871350.+	chr5	134871350	134871351	+	0	NA	"exon (NM_006161, exon 1 of 1)"	"exon (NM_006161, exon 1 of 1)"	289	NM_006161	4762	Hs.248149	NM_006161	ENSG00000181965	NEUROG1	AKA|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding
chr16.2131803.-	chr16	2131803	2131804	-	0	NA	"intron (NM_001077183, intron 30 of 39)"	"intron (NM_001077183, intron 30 of 39)"	-8482	NR_030646	100188847		NR_030646		MIR1225	MIRN1225	microRNA 1225	miscRNA
chr8.6875657.-	chr8	6875657	6875658	-	0	NA	"intron (NM_004084, intron 1 of 2).3"	"intron (NM_004084, intron 1 of 2).3"	-159	NM_005217	1668	Hs.654448	NM_005217	ENSG00000239839	DEFA3	DEF3|HNP-3|HNP3|HP-3|HP3	"defensin, alpha 3, neutrophil-specific"	protein-coding
chr9.36860002.+	chr9	36860002	36860003	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4303	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr10.104209681.+	chr10	104209681	104209682	+	0	NA	TTS (NM_024886)	TTS (NM_024886)	107	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr16.31091428.+	chr16	31091428	31091429	+	0	NA	"exon (NM_014699, exon 2 of 3)"	"exon (NM_014699, exon 2 of 3)"	5685	NM_014699	9726	Hs.119273	NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
chr19.55850959.+	chr19	55850959	55850960	+	0	NA	promoter-TSS (NM_032701)	promoter-TSS (NM_032701)	-262	NM_032701	84787	Hs.590982	NM_032701	ENSG00000133247	SUV420H2	KMT5C	suppressor of variegation 4-20 homolog 2 (Drosophila)	protein-coding
chr11.126276472.+	chr11	126276472	126276473	+	0	NA	"intron (NM_001254759, intron 1 of 8)"	"intron (NM_001254759, intron 1 of 8)"	395	NM_001254759	6484	Hs.591947	NM_001254757	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	"ST3 beta-galactoside alpha-2,3-sialyltransferase 4"	protein-coding
chr2.148597923.-	chr2	148597923	148597924	-	0	NA	Intergenic	AluJb|SINE|Alu	4647	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	"activin A receptor, type IIA"	protein-coding
chr20.20749161.-	chr20	20749161	20749162	-	0	NA	Intergenic	LTR12C|LTR|ERV1	55895	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr15.30396201.+	chr15	30396201	30396202	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	266	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr5.89746545.+	chr5	89746545	89746546	+	0	NA	Intergenic	AluSz|SINE|Alu	24040	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr6.138984652.-	chr6	138984652	138984653	-	0	NA	Intergenic	AluSp|SINE|Alu	28153	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr9.120507377.-	chr9	120507377	120507378	-	0	NA	Intergenic	CpG	-40924	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr1.1377051.+	chr1	1377051	1377052	+	0	NA	"3' UTR (NM_199121, exon 3 of 3)"	"3' UTR (NM_199121, exon 3 of 3)"	6148	NM_022834	64856	Hs.449009	NM_022834	ENSG00000179403	VWA1	WARP	von Willebrand factor A domain containing 1	protein-coding
chr2.202046017.-	chr2	202046017	202046018	-	0	NA	Intergenic	AluSz|SINE|Alu	1604	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr1.158012600.+	chr1	158012600	158012601	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49537	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr1.10727944.+	chr1	10727944	10727945	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128789	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr14.20670526.+	chr14	20670526	20670527	+	0	NA	Intergenic	AluSq2|SINE|Alu	5031	NM_001005503	390439	Hs.554582	NM_001005503	ENSG00000196832	OR11G2	OR14-34	"olfactory receptor, family 11, subfamily G, member 2"	protein-coding
chr11.128840179.+	chr11	128840179	128840180	+	0	NA	"exon (NM_014715, exon 13 of 13)"	"exon (NM_014715, exon 13 of 13)"	-26885	NM_022112	63970	Hs.160953	NM_001195194		TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
chr20.43040169.-	chr20	43040169	43040170	-	0	NA	"intron (NM_178850, intron 3 of 7)"	"intron (NM_178850, intron 3 of 7)"	-3409	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	miscRNA
chr6.126111926.-	chr6	126111926	126111927	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-17	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr9.138959064.-	chr9	138959064	138959065	-	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	-28067	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr2.127729838.+	chr2	127729838	127729839	+	0	NA	Intergenic	CpG	135065	NM_139343	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
chr2.242143593.-	chr2	242143593	242143594	-	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	-15669	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr1.194872511.+	chr1	194872511	194872512	+	0	NA	Intergenic	AluSx|SINE|Alu	1679100	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr20.46019486.+	chr20	46019486	46019487	+	0	NA	Intergenic	AluY|SINE|Alu	-34012	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr10.71562748.-	chr10	71562748	71562749	-	0	NA	"intron (NM_001130103, intron 1 of 39)"	CpG	-1104	NM_080805	1305	Hs.695934	NM_001130103	ENSG00000197467	COL13A1	COLXIIIA1	"collagen, type XIII, alpha 1"	protein-coding
chr5.52316782.+	chr5	52316782	52316783	+	0	NA	"intron (NR_073107, intron 1 of 28)"	AluSx|SINE|Alu	31626	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	"integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)"	protein-coding
chr1.217394780.-	chr1	217394780	217394781	-	0	NA	Intergenic	AluSq2|SINE|Alu	83683	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr22.18532566.-	chr22	18532566	18532567	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20415	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr16.88387006.+	chr16	88387006	88387007	+	0	NA	Intergenic	L2b|LINE|L2	-106873	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr1.151195948.-	chr1	151195948	151195949	-	0	NA	"intron (NM_003557, intron 1 of 14)"	AluSc8|SINE|Alu	-24927	NM_001135638	8394	Hs.661888	NM_001135636	ENSG00000143398	PIP5K1A	-	"phosphatidylinositol-4-phosphate 5-kinase, type I, alpha"	protein-coding
chr8.56758284.+	chr8	56758284	56758285	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34102	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr7.37013445.-	chr7	37013445	37013446	-	0	NA	"intron (NM_001206480, intron 16 of 21)"	LTR12C|LTR|ERV1	-11272	NM_001039459	9844	Hs.434989	NM_001039459		ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
chrX.47178743.-	chrX	47178743	47178744	-	0	NA	Intergenic	AluY|SINE|Alu	51256	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr2.242447223.+	chr2	242447223	242447224	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	552	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr9.72286975.-	chr9	72286975	72286976	-	0	NA	"intron (NM_001163, intron 1 of 12)"	CpG	-300	NM_001163	320	Hs.592974	NM_001163		APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	"amyloid beta (A4) precursor protein-binding, family A, member 1"	protein-coding
chr13.110832773.+	chr13	110832773	110832774	+	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	126723	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chr2.109308523.-	chr2	109308523	109308524	-	0	NA	Intergenic	AluY|SINE|Alu	27414	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr2.210525383.-	chr2	210525383	210525384	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80980	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr9.21968224.+	chr9	21968224	21968225	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1086	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr9.137571978.+	chr9	137571978	137571979	+	0	NA	"intron (NM_000093, intron 1 of 65)"	"intron (NM_000093, intron 1 of 65)"	38326	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr20.656369.+	chr20	656369	656370	+	0	NA	"5' UTR (NM_033129, exon 1 of 2)"	"5' UTR (NM_033129, exon 1 of 2)"	454	NM_033129	85508	Hs.355284	NM_033129	ENSG00000215397	SCRT2	ZNF898B	"scratch homolog 2, zinc finger protein (Drosophila)"	protein-coding
chr2.101245804.+	chr2	101245804	101245805	+	0	NA	Intergenic	Intergenic	66386	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr12.39837527.-	chr12	39837527	39837528	-	0	NA	promoter-TSS (NM_001173463)	promoter-TSS (NM_001173463)	335	NM_001173465	55605	Hs.374201	NM_001173463	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
chr1.26438735.+	chr1	26438735	26438736	+	0	NA	"intron (NM_152835, intron 1 of 2)"	CpG	467	NM_152835	149420	Hs.736837	NM_001243532	ENSG00000175087	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
chr13.114929689.+	chr13	114929689	114929690	+	0	NA	Intergenic	Intergenic	-31594	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.38595127.-	chr2	38595127	38595128	-	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	-9305	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr17.40536641.+	chr17	40536641	40536642	+	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	3764	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr2.149388683.+	chr2	149388683	149388684	+	0	NA	Intergenic	AluY|SINE|Alu	-13877	NM_015630	26122	Hs.23270	NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chr10.101292638.+	chr10	101292638	101292639	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-52	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr9.26387261.+	chr9	26387261	26387262	+	0	NA	Intergenic	AluY|SINE|Alu	320588	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr10.120841964.-	chr10	120841964	120841965	-	0	NA	Intergenic	AluSx3|SINE|Alu	1630	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr5.178157380.-	chr5	178157380	178157381	-	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	-323	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr10.81865000.-	chr10	81865000	81865001	-	0	NA	Intergenic	AluSx|SINE|Alu	-25999	NR_072986	80195	Hs.169982	NM_001270367	ENSG00000133678	TMEM254	C10orf57|bA369J21.6	transmembrane protein 254	protein-coding
chr1.110881052.-	chr1	110881052	110881053	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-741	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr2.43253956.-	chr2	43253956	43253957	-	0	NA	Intergenic	Intergenic	-199789	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr1.7953309.-	chr1	7953309	7953310	-	0	NA	Intergenic	AluJb|SINE|Alu	39758	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr16.443623.-	chr16	443623	443624	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3569	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr6.24720976.-	chr6	24720976	24720977	-	0	NA	Intergenic	CpG	1573	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr1.54953564.+	chr1	54953564	54953565	+	0	NA	Intergenic	Intergenic	-60243	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr6.169902232.+	chr6	169902232	169902233	+	0	NA	"intron (NM_001202550, intron 21 of 21)"	"intron (NM_001202550, intron 21 of 21)"	199927	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr14.94606717.+	chr14	94606717	94606718	+	0	NA	Intergenic	Intergenic	-10760	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chr16.924571.+	chr16	924571	924572	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69128	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr2.48079379.+	chr2	48079379	48079380	+	0	NA	"intron (NM_001190274, intron 1 of 22)"	AluSx1|SINE|Alu	36479	NM_025133	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chr7.155246410.-	chr7	155246410	155246411	-	0	NA	Intergenic	CpG	4414	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr9.101966970.-	chr9	101966970	101966971	-	0	NA	Intergenic	AluSx|SINE|Alu	-17276	NM_033087	85365	Hs.40919	NM_033087		ALG2	CDGIi|NET38|hALPG2	"ALG2, alpha-1,3/1,6-mannosyltransferase"	protein-coding
chr20.3883955.+	chr20	3883955	3883956	+	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	13492	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr6.20301588.+	chr6	20301588	20301589	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-88893	NM_001080480	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
chr20.45571524.+	chr20	45571524	45571525	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48261	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chrX.153657074.-	chrX	153657074	153657075	-	0	NA	promoter-TSS (NM_001183)	promoter-TSS (NM_001183)	-96	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr8.94702756.+	chr8	94702756	94702757	+	0	NA	"intron (NR_033858, intron 1 of 10)"	AluSq2|SINE|Alu	9905	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	miscRNA
chr3.31573999.-	chr3	31573999	31574000	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	492	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr2.4156365.+	chr2	4156365	4156366	+	0	NA	Intergenic	CpG	-134743	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr5.12186595.+	chr5	12186595	12186596	+	0	NA	Intergenic	AluYa5|SINE|Alu	-282485	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	"catenin (cadherin-associated protein), delta 2"	protein-coding
chr19.18794716.-	chr19	18794716	18794717	-	0	NA	"intron (NM_015321, intron 1 of 13)"	CpG	-291	NM_001098482	23373	Hs.371096	NM_025021	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
chr3.8635274.+	chr3	8635274	8635275	+	0	NA	Intergenic	Intergenic	21806	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr10.35327216.-	chr10	35327216	35327217	-	0	NA	"intron (NM_001198778, intron 9 of 20)"	AluSx3|SINE|Alu	-36042	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr2.213402719.+	chr2	213402719	213402720	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	633	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr2.44294154.-	chr2	44294154	44294155	-	0	NA	Intergenic	SVA_D|Other|Other	71010	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr12.26964585.+	chr12	26964585	26964586	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21546	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr14.103988564.-	chr14	103988564	103988565	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-632	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr22.38166164.-	chr22	38166164	38166165	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluY|SINE|Alu	-23923	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chrX.152916376.-	chrX	152916376	152916377	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8479	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr12.100804220.-	chr12	100804220	100804221	-	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	-53363	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr4.1549617.-	chr4	1549617	1549618	-	0	NA	Intergenic	Intergenic	-136101	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr13.20343689.+	chr13	20343689	20343690	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13470	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr17.1226110.+	chr17	1226110	1226111	+	0	NA	Intergenic	AluSx|SINE|Alu	43153	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr7.1587802.+	chr7	1587802	1587803	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8264	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr1.103215019.-	chr1	103215019	103215020	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	-359033	NM_080630	1301	Hs.523446	NM_001190709	ENSG00000060718	COL11A1	CO11A1|COLL6|STL2	"collagen, type XI, alpha 1"	protein-coding
chr12.131551523.-	chr12	131551523	131551524	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98033	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr7.5396275.+	chr7	5396275	5396276	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66902	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr4.166248517.+	chr4	166248517	166248518	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-301	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.79749337.-	chr1	79749337	79749338	-	0	NA	Intergenic	AluSx|SINE|Alu	276842	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr18.73357725.+	chr18	73357725	73357726	+	0	NA	Intergenic	L2|LINE|L2	-218136	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr20.39978506.-	chr20	39978506	39978507	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8946	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr6.119399236.-	chr6	119399236	119399237	-	0	NA	"intron (NM_001100411, intron 1 of 16)"	CpG	-576	NM_024581	79632	Hs.443789	NM_001100411	ENSG00000111879	FAM184A	C6orf60	"family with sequence similarity 184, member A"	protein-coding
chr10.17622243.-	chr10	17622243	17622244	-	0	NA	Intergenic	AluY|SINE|Alu	-37130	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr8.3825566.-	chr8	3825566	3825567	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026762	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr6.42989505.+	chr6	42989505	42989506	+	0	NA	TTS (NM_057161)	TTS (NM_057161)	120	NM_033112	88745	Hs.309231	NM_033112	ENSG00000124541	RRP36	C6orf153|dJ20C7.4	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding
chr7.1474626.+	chr7	1474626	1474627	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24483	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr5.178772151.+	chr5	178772151	178772152	+	0	NA	"intron (NM_021599, intron 1 of 10)"	CpG-21527	280	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr3.36494787.-	chr3	36494787	36494788	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72690	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr1.45948984.-	chr1	45948984	45948985	-	0	NA	"intron (NM_007170, intron 1 of 10)"	"intron (NM_007170, intron 1 of 10)"	-7856	NM_007170	10420	Hs.591499	NM_007170	ENSG00000070759	TESK2	-	testis-specific kinase 2	protein-coding
chr9.35846401.+	chr9	35846401	35846402	+	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	-13870	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr1.244448199.-	chr1	244448199	244448200	-	0	NA	Intergenic	Intergenic	67738	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
chr10.31892613.-	chr10	31892613	31892614	-	0	NA	Intergenic	CpG	-282549	NM_001174094	6935	Hs.124503	NM_001128128	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
chr2.240187911.+	chr2	240187911	240187912	+	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	-39246	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr20.62108070.-	chr20	62108070	62108071	-	0	NA	Intergenic	AluSq2|SINE|Alu	4077	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr9.134449870.+	chr9	134449870	134449871	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43208	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr12.133007606.+	chr12	133007606	133007607	+	0	NA	Intergenic	Intergenic	-59551	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr16.53448441.+	chr16	53448441	53448442	+	0	NA	Intergenic	AluSp|SINE|Alu	-19910	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr6.151771588.-	chr6	151771588	151771589	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1728	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr12.34492619.+	chr12	34492619	34492620	+	0	NA	Intergenic	GSATII|Satellite|centr	317403	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr4.2272295.+	chr4	2272295	2272296	+	0	NA	"3' UTR (NM_001172659, exon 13 of 13)"	"3' UTR (NM_001172659, exon 13 of 13)"	-8556	NM_006454	10608	Hs.655020	NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
chr16.70207340.+	chr16	70207340	70207341	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-588	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr6.168149229.-	chr6	168149229	168149230	-	0	NA	Intergenic	Intergenic	-48310	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr9.130867518.-	chr9	130867518	130867519	-	0	NA	"intron (NM_001265614, intron 6 of 10)"	AluSx1|SINE|Alu	-6757	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr6.12012478.+	chr6	12012478	12012479	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-246	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr13.114306332.+	chr13	114306332	114306333	+	0	NA	"intron (NM_000705, intron 4 of 6)"	"intron (NM_000705, intron 4 of 6)"	6181	NM_000705	496	Hs.434202	NM_000705	ENSG00000186009	ATP4B	ATP6B	"ATPase, H+/K+ exchanging, beta polypeptide"	protein-coding
chr8.107670051.-	chr8	107670051	107670052	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-15	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr19.58254299.-	chr19	58254299	58254300	-	0	NA	Intergenic	AluSx|SINE|Alu	3865	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr20.50139962.+	chr20	50139962	50139963	+	0	NA	"exon (NM_012340, exon 2 of 11)"	"exon (NM_012340, exon 2 of 11)"	19296	NM_001258297	4773	Hs.744148	NM_001136021	ENSG00000101096	NFATC2	NFAT1|NFATP	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2"	protein-coding
chrX.112187617.-	chrX	112187617	112187618	-	0	NA	Intergenic	AluY|SINE|Alu	103574	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr10.12405377.-	chr10	12405377	12405378	-	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	-13794	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr22.20137573.-	chr22	20137573	20137574	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	142	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr16.85371248.-	chr16	85371248	85371249	-	0	NA	Intergenic	MER115|DNA|hAT-Tip100	31317	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr7.2716287.-	chr7	2716287	2716288	-	0	NA	Intergenic	Intergenic	2876	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr1.181058716.+	chr1	181058716	181058717	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1078	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr15.41687835.-	chr15	41687835	41687836	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6823	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr1.53335577.-	chr1	53335577	53335578	-	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	-27394	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr4.123063379.+	chr4	123063379	123063380	+	0	NA	Intergenic	AluSg7|SINE|Alu	-28379	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr16.1845096.+	chr16	1845096	1845097	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-187	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.519559.-	chr7	519559	519560	-	0	NA	Intergenic	Intergenic	-39922	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr10.24476742.-	chr10	24476742	24476743	-	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	20978	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr18.56338687.+	chr18	56338687	56338688	+	0	NA	promoter-TSS (NM_006785)	promoter-TSS (NM_006785)	69	NM_173844	10892	Hs.601217	NM_006785	ENSG00000172175	MALT1	MLT|MLT1	mucosa associated lymphoid tissue lymphoma translocation gene 1	protein-coding
chr10.102153583.-	chr10	102153583	102153584	-	0	NA	Intergenic	AluSq2|SINE|Alu	-20250	NR_026762	90271	Hs.628088	NR_026762		LINC00263	C10orf75|NCRNA00263	long intergenic non-protein coding RNA 263	miscRNA
chr22.18532574.+	chr22	18532574	18532575	+	0	NA	Intergenic	AluSx1|SINE|Alu	20423	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr7.72991462.-	chr7	72991462	72991463	-	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	-1551	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr3.129670178.+	chr3	129670178	129670179	+	0	NA	Intergenic	Intergenic	-22936	NM_007117	7200	Hs.732877	NM_007117	ENSG00000170893	TRH	-	thyrotropin-releasing hormone	protein-coding
chr8.67618009.-	chr8	67618009	67618010	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6644	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr14.23706406.-	chr14	23706406	23706407	-	0	NA	Intergenic	AluSz|SINE|Alu	-48903	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr3.8721164.+	chr3	8721164	8721165	+	0	NA	Intergenic	Intergenic	-27400	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr11.19881567.-	chr11	19881567	19881568	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99938	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr7.5345665.-	chr7	5345665	5345666	-	0	NA	TTS (NM_001080495)	TTS (NM_001080495)	-23104	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr3.171428803.-	chr3	171428803	171428804	-	0	NA	"intron (NM_002662, intron 9 of 26)"	AluSp|SINE|Alu	-99481	NM_001130081	5337	Hs.382865	NM_001130081	ENSG00000075651	PLD1	-	"phospholipase D1, phosphatidylcholine-specific"	protein-coding
chr17.810062.+	chr17	810062	810063	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42711	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr7.1275833.+	chr7	1275833	1275834	+	0	NA	"exon (NM_001080461, exon 3 of 3)"	"exon (NM_001080461, exon 3 of 3)"	3179	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr9.114393794.+	chr9	114393794	114393795	+	0	NA	"non-coding (NR_037148, exon 1 of 5)"	"non-coding (NR_037148, exon 1 of 5)"	162	NM_004125	552891	Hs.534196	NM_004125	ENSG00000059769	DNAJC25-GNG10	-	DNAJC25-GNG10 readthrough	protein-coding
chr19.10587528.-	chr19	10587528	10587529	-	0	NA	Intergenic	AluSq2|SINE|Alu	-23895	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr2.43254054.+	chr2	43254054	43254055	+	0	NA	Intergenic	Intergenic	199691	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr4.7561854.+	chr4	7561854	7561855	+	0	NA	"intron (NM_020777, intron 3 of 26)"	"intron (NM_020777, intron 3 of 26)"	100099	NR_036238	100422826		NR_036238		MIR4274	-	microRNA 4274	miscRNA
chr5.14460441.-	chr5	14460441	14460442	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121450	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr13.50297697.-	chr13	50297697	50297698	-	0	NA	"intron (NM_002267, intron 7 of 16)"	AluSg7|SINE|Alu	32074	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr7.1147414.+	chr7	1147414	1147415	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19691	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr17.4708641.+	chr17	4708641	4708642	+	0	NA	Intergenic	AluSp|SINE|Alu	-1755	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr4.113806585.+	chr4	113806585	113806586	+	0	NA	"intron (NM_001127493, intron 1 of 46)"	AluSg|SINE|Alu	67346	NM_001127493	287	Hs.620557	NM_001127493	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	"ankyrin 2, neuronal"	protein-coding
chr8.141030079.+	chr8	141030079	141030080	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314780	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr11.31560771.-	chr11	31560771	31560772	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29474	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chrX.133643968.+	chrX	133643968	133643969	+	0	NA	Intergenic	L1PA10|LINE|L1	30324	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr10.45240290.+	chr10	45240290	45240291	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166474	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr19.17585843.+	chr19	17585843	17585844	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4543	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr7.5322960.+	chr7	5322960	5322961	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	399	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr18.45935555.-	chr18	45935555	45935556	-	0	NA	Intergenic	CpG	129872	NM_014772	9811	Hs.145230	NM_001142397	ENSG00000134030	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
chr17.28675270.-	chr17	28675270	28675271	-	0	NA	Intergenic	AluY|SINE|Alu	14205	NM_206832	388364	Hs.371005	NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
chr18.77244877.+	chr18	77244877	77244878	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84551	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr12.49479719.-	chr12	49479719	49479720	-	0	NA	Intergenic	AluSq|SINE|Alu	-8883	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chr7.33164261.+	chr7	33164261	33164262	+	0	NA	Intergenic	AluYf5|SINE|Alu	-4891	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr1.3560988.-	chr1	3560988	3560989	-	0	NA	"intron (NM_017818, intron 3 of 11)"	CpG	-5683	NM_017818	49856	Hs.31714	NM_017818	ENSG00000116213	WRAP73	WDR8	"WD repeat containing, antisense to TP73"	protein-coding
chr19.2400842.+	chr19	2400842	2400843	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11058	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr8.95668732.+	chr8	95668732	95668733	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15368	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr10.32358179.-	chr10	32358179	32358180	-	0	NA	Intergenic	AluSg7|SINE|Alu	12808	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr4.85768681.-	chr4	85768681	85768682	-	0	NA	"intron (NM_014991, intron 5 of 67)"	AluSc8|SINE|Alu	-118863	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr17.4708680.+	chr17	4708680	4708681	+	0	NA	Intergenic	AluSp|SINE|Alu	-1716	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr5.2371477.+	chr5	2371477	2371478	+	0	NA	Intergenic	Intergenic	380292	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr2.204121205.+	chr2	204121205	204121206	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18041	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr15.93372486.-	chr15	93372486	93372487	-	0	NA	Intergenic	AluSg|SINE|Alu	-33772	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr18.77136787.+	chr18	77136787	77136788	+	0	NA	"intron (NM_198531, intron 29 of 29)"	AluSx1|SINE|Alu	-18985	NM_006162	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr19.58310327.+	chr19	58310327	58310328	+	0	NA	Intergenic	AluY|SINE|Alu	15954	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr12.113553902.-	chr12	113553902	113553903	-	0	NA	"intron (NM_004658, intron 9 of 21)"	AluSz|SINE|Alu	-19657	NM_001193521	8437	Hs.528693	NM_001193520	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1 (GAP1 like)	protein-coding
chr1.78837742.-	chr1	78837742	78837743	-	0	NA	Intergenic	AluSx|SINE|Alu	118986	NM_001039585	5737	Hs.654365	NM_000959	ENSG00000122420	PTGFR	FP	prostaglandin F receptor (FP)	protein-coding
chr8.27695279.+	chr8	27695279	27695280	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	70	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr19.3766724.-	chr19	3766724	3766725	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4059	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr1.151573465.-	chr1	151573465	151573466	-	0	NA	Intergenic	SVA_E|Other|Other	11197	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr20.52741090.-	chr20	52741090	52741091	-	0	NA	Intergenic	AluSx1|SINE|Alu	-49426	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr19.8408085.+	chr19	8408085	8408086	+	0	NA	promoter-TSS (NM_198471)	promoter-TSS (NM_198471)	61	NM_198471	256949	Hs.322473	NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
chr19.1252702.-	chr19	1252702	1252703	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4150	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr11.114967406.+	chr11	114967406	114967407	+	0	NA	Intergenic	AluSz|SINE|Alu	407835	NM_014333	23705	Hs.370510	NM_001098517	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
chr8.22594703.-	chr8	22594703	22594704	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43888	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr7.2943508.-	chr7	2943508	2943509	-	0	NA	Intergenic	Intergenic	59549	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr5.1824213.+	chr5	1824213	1824214	+	0	NA	Intergenic	AluSz6|SINE|Alu	22717	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr6.25384263.+	chr6	25384263	25384264	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104607	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr22.50871780.-	chr22	50871780	50871781	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41684	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr20.61736918.+	chr20	61736918	61736919	+	0	NA	Intergenic	Intergenic	-3247	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr7.155834424.-	chr7	155834424	155834425	-	0	NA	Intergenic	Intergenic	229457	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr22.37641445.-	chr22	37641445	37641446	-	0	NA	Intergenic	Intergenic	1140	NM_002872	5880	Hs.517601	NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022	"ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)"	protein-coding
chr1.36991270.+	chr1	36991270	36991271	+	0	NA	Intergenic	Intergenic	-42355	NM_156039	1441	Hs.524517	NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
chr21.47403473.+	chr21	47403473	47403474	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1810	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr2.202045966.-	chr2	202045966	202045967	-	0	NA	Intergenic	Intergenic	1655	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr21.47503457.+	chr21	47503457	47503458	+	0	NA	Intergenic	Intergenic	-14576	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr10.17622257.-	chr10	17622257	17622258	-	0	NA	Intergenic	AluY|SINE|Alu	-37116	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr2.242500492.+	chr2	242500492	242500493	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1934	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr4.110481646.+	chr4	110481646	110481647	+	0	NA	"intron (NM_017918, intron 1 of 7)"	CpG	291	NM_017918	55013	Hs.234149	NM_017918		CCDC109B	-	coiled-coil domain containing 109B	protein-coding
chr9.6807794.-	chr9	6807794	6807795	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50153	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr17.40464892.+	chr17	40464892	40464893	+	0	NA	TTS (NM_213662)	TTS (NM_213662)	25327	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr11.62551845.-	chr11	62551845	62551846	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3029	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr17.80687632.+	chr17	80687632	80687633	+	0	NA	Intergenic	CpG	-5820	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr13.95987719.-	chr13	95987719	95987720	-	0	NA	Intergenic	AluSq2|SINE|Alu	34032	NM_005845	10257	Hs.508423	NM_001105515	ENSG00000125257	ABCC4	EST170205|MOAT-B|MOATB|MRP4	"ATP-binding cassette, sub-family C (CFTR/MRP), member 4"	protein-coding
chr2.240895513.-	chr2	240895513	240895514	-	0	NA	Intergenic	Intergenic	13002	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	-	microRNA 4786	miscRNA
chr6.25384351.+	chr6	25384351	25384352	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104695	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr10.12344402.-	chr10	12344402	12344403	-	0	NA	Intergenic	AluSc8|SINE|Alu	47181	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr19.58250034.+	chr19	58250034	58250035	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8130	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr13.40194319.+	chr13	40194319	40194320	+	0	NA	Intergenic	AluSq2|SINE|Alu	-16963	NM_005780	10186	Hs.507798	NM_005780	ENSG00000183722	LHFP	-	lipoma HMGIC fusion partner	protein-coding
chr4.186887688.-	chr4	186887688	186887689	-	0	NA	Intergenic	AluSx1|SINE|Alu	9818	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr11.777246.+	chr11	777246	777247	+	0	NA	"intron (NM_182612, intron 1 of 7)"	CpG	241	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr4.88032419.-	chr4	88032419	88032420	-	0	NA	"intron (NM_001166693, intron 11 of 20)"	AluY|SINE|Alu	-104266	NM_005935	4299	Hs.480190	NM_001166693	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	"AF4/FMR2 family, member 1"	protein-coding
chr12.53273333.+	chr12	53273333	53273334	+	0	NA	Intergenic	CpG	25535	NM_002273	3856	Hs.708445	NM_001256282	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
chr18.24420412.+	chr18	24420412	24420413	+	0	NA	Intergenic	AluYa5|SINE|Alu	22163	NM_004028	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	HMIWC2|MIWC	aquaporin 4	protein-coding
chr1.183670890.-	chr1	183670890	183670891	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48442	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr5.3764368.+	chr5	3764368	3764369	+	0	NA	Intergenic	Intergenic	168200	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr17.57884668.-	chr17	57884668	57884669	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33959	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr16.87360635.-	chr16	87360635	87360636	-	0	NA	Intergenic	Intergenic	9609	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr2.173941046.+	chr2	173941046	173941047	+	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	481	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr4.76598771.+	chr4	76598771	76598772	+	0	NA	promoter-TSS (NM_203505)	promoter-TSS (NM_203505)	-104	NM_203504	9908	Hs.303676	NM_012297	ENSG00000138757	G3BP2	-	GTPase activating protein (SH3 domain) binding protein 2	protein-coding
chr1.225615464.+	chr1	225615464	225615465	+	0	NA	"intron (NM_194442, intron 1 of 13)"	CpG	351	NM_002296	3930	Hs.735694	NM_002296	ENSG00000143815	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
chr14.64976415.-	chr14	64976415	64976416	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5123	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chrX.112187615.+	chrX	112187615	112187616	+	0	NA	Intergenic	AluY|SINE|Alu	-103572	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr12.32200125.+	chr12	32200125	32200126	+	0	NA	Intergenic	AluSz|SINE|Alu	-53323	NR_046944	100873778		NR_046944		RNU6-78	-	"RNA, U6 small nuclear 78"	snRNA
chr6.169648523.+	chr6	169648523	169648524	+	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	5614	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr17.57884700.+	chr17	57884700	57884701	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33927	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr5.78890153.-	chr5	78890153	78890154	-	0	NA	Intergenic	AluY|SINE|Alu	18090	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr6.33500281.+	chr6	33500281	33500282	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47789	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr6.88932879.+	chr6	88932879	88932880	+	0	NA	Intergenic	AluY|SINE|Alu	-57112	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chr1.217394789.-	chr1	217394789	217394790	-	0	NA	Intergenic	AluSq2|SINE|Alu	83692	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr6.154868721.+	chr6	154868721	154868722	+	0	NA	Intergenic	AluY|SINE|Alu	-36968	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding
chr8.132916532.-	chr8	132916532	132916533	-	0	NA	"5' UTR (NM_015137, exon 1 of 23)"	"5' UTR (NM_015137, exon 1 of 23)"	-176	NM_015137	23167	Hs.204564	NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
chr1.226350693.-	chr1	226350693	226350694	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23730	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr1.167190149.-	chr1	167190149	167190150	-	0	NA	promoter-TSS (NM_002697)	promoter-TSS (NM_002697)	-26	NR_037163	5451	Hs.283402	NM_001198783	ENSG00000143190	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
chr10.94857359.+	chr10	94857359	94857360	+	0	NA	Intergenic	Intergenic	23712	NM_000783	1592	Hs.150595	NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	"cytochrome P450, family 26, subfamily A, polypeptide 1"	protein-coding
chr10.135104679.-	chr10	135104679	135104680	-	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	14272	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr4.2878507.+	chr4	2878507	2878508	+	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	32923	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr10.71999211.-	chr10	71999211	71999212	-	0	NA	Intergenic	SVA_A|Other|Other	6021	NM_021129	5464	Hs.437403	NM_021129	ENSG00000180817	PPA1	IOPPP|PP|PP1|SID6-8061	pyrophosphatase (inorganic) 1	protein-coding
chr10.120966483.-	chr10	120966483	120966484	-	0	NA	promoter-TSS (NM_005308)	promoter-TSS (NM_005308)	714	NM_005308	2869	Hs.736460	NM_005308	ENSG00000198873	GRK5	GPRK5	G protein-coupled receptor kinase 5	protein-coding
chr11.67351050.+	chr11	67351050	67351051	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-16	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr6.170475069.-	chr6	170475069	170475070	-	0	NA	Intergenic	CpG	-96588	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chrX.15336056.-	chrX	15336056	15336057	-	0	NA	Intergenic	AluY|SINE|Alu	2310	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr2.166881330.+	chr2	166881330	166881331	+	0	NA	"intron (NM_001165963, intron 16 of 25)"	AluJb|SINE|Alu	48819	NM_001165963	6323	Hs.22654	NM_001165963	ENSG00000144285	SCN1A	EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI	"sodium channel, voltage-gated, type I, alpha subunit"	protein-coding
chr20.48807730.-	chr20	48807730	48807731	-	0	NA	"exon (NM_005194, exon 1 of 1)"	"exon (NM_005194, exon 1 of 1)"	-610	NM_005194	1051	Hs.720603	NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|CRP2|IL6DBP|LAP|NF-IL6|TCF5	"CCAAT/enhancer binding protein (C/EBP), beta"	protein-coding
chr7.1798893.+	chr7	1798893	1798894	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50095	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr21.43109596.+	chr21	43109596	43109597	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10134	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr9.38829844.+	chr9	38829844	38829845	+	0	NA	Intergenic	AluY|SINE|Alu	208759	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr2.96149429.-	chr2	96149429	96149430	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1050	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr12.132623204.+	chr12	132623204	132623205	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5676	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr11.2905615.-	chr11	2905615	2905616	-	0	NA	"intron (NM_000076, intron 1 of 2)"	CpG-3796	-1380	NM_001122631	1028	Hs.106070	NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	"cyclin-dependent kinase inhibitor 1C (p57, Kip2)"	protein-coding
chr8.42217759.+	chr8	42217759	42217760	+	0	NA	"intron (NM_002690, intron 9 of 13)"	AluSz|SINE|Alu	16915	NM_014420	27121	Hs.159311	NM_014420	ENSG00000104371	DKK4	DKK-4	dickkopf homolog 4 (Xenopus laevis)	protein-coding
chr5.18111617.+	chr5	18111617	18111618	+	0	NA	Intergenic	AluY|SINE|Alu	-724198	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr18.2377776.+	chr18	2377776	2377777	+	0	NA	Intergenic	AluSg7|SINE|Alu	193713	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr15.41193043.+	chr15	41193043	41193044	+	0	NA	"exon (NM_020857, exon 4 of 5)"	"exon (NM_020857, exon 4 of 5)"	6415	NM_020857	57617	Hs.23876	NM_020857	ENSG00000104142	VPS18	PEP3	vacuolar protein sorting 18 homolog (S. cerevisiae)	protein-coding
chr4.123063376.-	chr4	123063376	123063377	-	0	NA	Intergenic	AluSg7|SINE|Alu	28382	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr13.26647785.+	chr13	26647785	26647786	+	0	NA	Intergenic	AluY|SINE|Alu	-22587	NM_001007538	387914	Hs.433791	NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa homolog 2 (Xenopus laevis)	protein-coding
chr3.104745276.+	chr3	104745276	104745277	+	0	NA	Intergenic	AluY|SINE|Alu	-340281	NM_001243283	214	Hs.740441	NM_001243280	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
chr12.2904972.-	chr12	2904972	2904973	-	0	NA	"intron (NM_002014, intron 1 of 9)"	CpG	-864	NM_002014	2288	Hs.713721	NM_002014		FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	"FK506 binding protein 4, 59kDa"	protein-coding
chr12.21599213.+	chr12	21599213	21599214	+	0	NA	"intron (NM_024854, intron 3 of 11)"	AluY|SINE|Alu	8675	NM_024854	79912	Hs.709545	NM_024854		PYROXD1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
chr12.49163939.+	chr12	49163939	49163940	+	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	1881	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr2.129686614.-	chr2	129686614	129686615	-	0	NA	Intergenic	AluY|SINE|Alu	610443	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr2.120964331.+	chr2	120964331	120964332	+	0	NA	Intergenic	Intergenic	16653	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr11.45810314.+	chr11	45810314	45810315	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15309	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr3.22843187.-	chr3	22843187	22843188	-	0	NA	Intergenic	L1PA2|LINE|L1	401597	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr13.20387526.+	chr13	20387526	20387527	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30367	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr6.33811474.-	chr6	33811474	33811475	-	0	NA	Intergenic	LTR33|LTR|ERVL	39681	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr16.30810959.-	chr16	30810959	30810960	-	0	NA	Intergenic	AluSx|SINE|Alu	12436	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr2.86948231.-	chr2	86948231	86948232	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	-14	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr1.60870858.+	chr1	60870858	60870859	+	0	NA	Intergenic	AluYa5|SINE|Alu	-331416	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chr3.164119716.+	chr3	164119716	164119717	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676567	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr8.39197388.-	chr8	39197388	39197389	-	0	NA	"intron (NR_001448, intron 7 of 14)"	SVA_B|Other|Other	-25206	NR_001448	255926	Hs.369765	NR_001448	ENSG00000196115	ADAM5	ADAM5P|TMDCII	"ADAM metallopeptidase domain 5, pseudogene"	pseudo
chr3.109059731.+	chr3	109059731	109059732	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3312	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr1.242294506.+	chr1	242294506	242294507	+	0	NA	"intron (NM_152666, intron 6 of 10)"	AluSc|SINE|Alu	-132121	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr6.169648550.+	chr6	169648550	169648551	+	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	5587	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr20.1317928.+	chr20	1317928	1317929	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-8049	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr12.31231822.+	chr12	31231822	31231823	+	0	NA	"intron (NM_004399, intron 2 of 25)"	AluY|SINE|Alu	-5041	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	-	DDX11 antisense RNA 1	miscRNA
chr8.128328724.-	chr8	128328724	128328725	-	0	NA	Intergenic	Intergenic	99133	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chrX.68786579.+	chrX	68786579	68786580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49332	NM_001005610	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr22.17719091.-	chr22	17719091	17719092	-	0	NA	Intergenic	AluSg|SINE|Alu	28312	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr5.64597682.-	chr5	64597682	64597683	-	0	NA	"intron (NM_197941, intron 9 of 24)"	AluSx|SINE|Alu	-180022	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	"ADAM metallopeptidase with thrombospondin type 1 motif, 6"	protein-coding
chr8.100115717.-	chr8	100115717	100115718	-	0	NA	"intron (NR_047582, intron 6 of 8)"	AluJb|SINE|Alu	-90223	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr19.11060459.-	chr19	11060459	11060460	-	0	NA	Intergenic	AluY|SINE|Alu	11139	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr7.109212797.+	chr7	109212797	109212798	+	0	NA	Intergenic	AluSz|SINE|Alu	387473	NR_003024	442720	Hs.535194	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	"eukaryotic translation initiation factor 3, subunit I pseudogene 1"	pseudo
chr15.75431015.-	chr15	75431015	75431016	-	0	NA	Intergenic	Intergenic	63206	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr2.228067291.+	chr2	228067291	228067292	+	0	NA	"intron (NM_000091, intron 1 of 51)"	AluYk4|SINE|Alu	38010	NM_000091	1285	Hs.570065	NM_000091	ENSG00000169031	COL4A3	-	"collagen, type IV, alpha 3 (Goodpasture antigen)"	protein-coding
chr17.76880095.+	chr17	76880095	76880096	+	0	NA	"intron (NM_003255, intron 1 of 4)"	"intron (NM_003255, intron 1 of 4)"	19204	NM_001243540	100653515	Hs.734636	NM_001243540	ENSG00000178404	LOC100653515	-	differential display clone 8	protein-coding
chr12.131402491.-	chr12	131402491	131402492	-	0	NA	Intergenic	L2b|LINE|L2	35961	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr12.34492684.-	chr12	34492684	34492685	-	0	NA	Intergenic	GSATII|Satellite|centr	-317468	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.61595293.+	chr2	61595293	61595294	+	0	NA	"intron (NM_014709, intron 10 of 79)"	AluSc|SINE|Alu	49219	NR_003707	100124537	Hs.675825	NR_003707		SNORA70B	-	"small nucleolar RNA, H/ACA box 70B"	snoRNA
chr19.45852823.+	chr19	45852823	45852824	+	0	NA	"exon (NM_177417, exon 8 of 13)"	"exon (NM_177417, exon 8 of 13)"	8825	NM_177417	147700	Hs.298079	NM_177417	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
chr17.74894615.-	chr17	74894615	74894616	-	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	-25886	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr1.218165417.-	chr1	218165417	218165418	-	0	NA	Intergenic	AluSq|SINE|Alu	-99175	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr7.22396708.+	chr7	22396708	22396709	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-175	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr1.6453774.-	chr1	6453774	6453775	-	0	NA	promoter-TSS (NM_007274)	promoter-TSS (NM_007274)	-52	NM_007274	11332	Hs.126137	NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|RP1-120G22.10|hBACH	acyl-CoA thioesterase 7	protein-coding
chr1.55089180.-	chr1	55089180	55089181	-	0	NA	promoter-TSS (NM_176782)	promoter-TSS (NM_176782)	-20	NM_176782	338094	Hs.741434	NM_176782	ENSG00000162391	FAM151A	C1orf179	"family with sequence similarity 151, member A"	protein-coding
chr7.1542304.-	chr7	1542304	1542305	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1714	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr2.10303068.-	chr2	10303068	10303069	-	0	NA	"intron (NM_182626, intron 2 of 2)"	"intron (NM_182626, intron 2 of 2)"	-21087	NM_182626	348738	Hs.454981	NM_182626		C2orf48	-	chromosome 2 open reading frame 48	protein-coding
chrX.132930092.-	chrX	132930092	132930093	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189581	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr19.42394305.+	chr19	42394305	42394306	+	0	NA	"intron (NM_198977, intron 4 of 27)"	AluJb|SINE|Alu	5859	NM_199002	9138	Hs.631550	NM_004706	ENSG00000076928	ARHGEF1	GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding
chr17.78888141.-	chr17	78888141	78888142	-	0	NA	"intron (NM_020761, intron 21 of 33)"	MER52A|LTR|ERV1	77500	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr4.6946268.+	chr4	6946268	6946269	+	0	NA	"intron (NM_020773, intron 2 of 13)"	"intron (NM_020773, intron 2 of 13)"	34773	NM_020773	57533	Hs.518611	NM_001113361	ENSG00000132405	TBC1D14	-	"TBC1 domain family, member 14"	protein-coding
chr12.131551560.-	chr12	131551560	131551561	-	0	NA	"intron (NM_198827, intron 13 of 24)"	"intron (NM_198827, intron 13 of 24)"	97996	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr9.90885006.-	chr9	90885006	90885007	-	0	NA	Intergenic	AluY|SINE|Alu	118291	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr17.79427764.+	chr17	79427764	79427765	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9550	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr16.88257874.+	chr16	88257874	88257875	+	0	NA	Intergenic	Intergenic	-236005	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr8.96095119.+	chr8	96095119	96095120	+	0	NA	Intergenic	AluY|SINE|Alu	-9895	NR_037484	100500907		NR_037484	ENSG00000265256	MIR3150B	-	microRNA 3150b	miscRNA
chr6.146136070.+	chr6	146136070	146136071	+	0	NA	promoter-TSS (NM_032145)	promoter-TSS (NM_032145)	58	NR_038244	100507557	Hs.124537	NR_038244		LOC100507557	-	uncharacterized LOC100507557	miscRNA
chr19.40696474.+	chr19	40696474	40696475	+	0	NA	Intergenic	AluSx|SINE|Alu	-1177	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr13.19518215.-	chr13	19518215	19518216	-	0	NA	Intergenic	GSATX|Satellite|centr	64184	NR_026852	348021	Hs.314114	NR_026852	ENSG00000232685	LINC00442	-	long intergenic non-protein coding RNA 442	miscRNA
chr16.81849470.-	chr16	81849470	81849471	-	0	NA	"intron (NM_002661, intron 2 of 32)"	AluSz|SINE|Alu	-36571	NM_002661	5336	Hs.413111	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3	"phospholipase C, gamma 2 (phosphatidylinositol-specific)"	protein-coding
chr6.170782086.-	chr6	170782086	170782087	-	0	NA	Intergenic	AluSx3|SINE|Alu	-80331	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	"proteasome (prosome, macropain) subunit, beta type, 1"	protein-coding
chr7.1542227.+	chr7	1542227	1542228	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1791	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr12.56394859.-	chr12	56394859	56394860	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3816	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr17.4708712.+	chr17	4708712	4708713	+	0	NA	Intergenic	AluSp|SINE|Alu	-1684	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr1.52460253.+	chr1	52460253	52460254	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3817	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	"RAB3B, member RAS oncogene family"	protein-coding
chr8.609252.+	chr8	609252	609253	+	0	NA	Intergenic	Intergenic	71974	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr2.240187915.+	chr2	240187915	240187916	+	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	-39242	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr16.1032077.-	chr16	1032077	1032078	-	0	NA	promoter-TSS (NR_033645)	promoter-TSS (NR_033645)	-269	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
chr22.43175077.+	chr22	43175077	43175078	+	0	NA	Intergenic	AluY|SINE|Alu	-58201	NM_017436	53947	Hs.105956	NM_017436		A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	"alpha 1,4-galactosyltransferase"	protein-coding
chr8.141159469.-	chr8	141159469	141159470	-	0	NA	"intron (NM_031466, intron 17 of 22)"	AluSz|SINE|Alu	-308392	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr6.138984654.+	chr6	138984654	138984655	+	0	NA	Intergenic	AluSp|SINE|Alu	-28151	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr17.42869189.-	chr17	42869189	42869190	-	0	NA	Intergenic	AluY|SINE|Alu	-32621	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr5.140998346.-	chr5	140998346	140998347	-	0	NA	"intron (NM_005219, intron 1 of 27)"	CpG	-276	NM_001079812	1729	Hs.529451	NM_001079812	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|hDIA1	diaphanous homolog 1 (Drosophila)	protein-coding
chr3.9429706.+	chr3	9429706	9429707	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9468	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chrX.18849776.+	chrX	18849776	18849777	+	0	NA	Intergenic	AluY|SINE|Alu	-58638	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr7.74447210.+	chr7	74447210	74447211	+	0	NA	Intergenic	Intergenic	42489	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr13.81676515.-	chr13	81676515	81676516	-	0	NA	Intergenic	SVA_D|Other|Other	761429	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr3.172180153.-	chr3	172180153	172180154	-	0	NA	Intergenic	AluY|SINE|Alu	13907	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr22.17719089.+	chr22	17719089	17719090	+	0	NA	Intergenic	AluSg|SINE|Alu	-28310	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr19.4612648.-	chr19	4612648	4612649	-	0	NA	Intergenic	AluSx1|SINE|Alu	26879	NM_152362	126282	Hs.465643	NM_001167942	ENSG00000185361	TNFAIP8L1	TIPE1	"tumor necrosis factor, alpha-induced protein 8-like 1"	protein-coding
chr16.67469663.-	chr16	67469663	67469664	-	0	NA	"exon (NM_000196, exon 2 of 5)"	"exon (NM_000196, exon 2 of 5)"	-4627	NM_000196	3291	Hs.1376	NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid (11-beta) dehydrogenase 2	protein-coding
chr11.2399086.+	chr11	2399086	2399087	+	0	NA	"intron (NM_004356, intron 1 of 7)"	CpG	539	NM_004356	975	Hs.54457	NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
chr20.47588418.-	chr20	47588418	47588419	-	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	-50143	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr7.5557986.+	chr7	5557986	5557987	+	0	NA	Intergenic	AluYc|SINE|Alu	-4587	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr19.1819077.+	chr19	1819077	1819078	+	0	NA	"exon (NM_020695, exon 8 of 16)"	"exon (NM_020695, exon 8 of 16)"	-2840	NR_031730	100302210		NR_031730		MIR1909	MIRN1909|hsa-mir-1909	microRNA 1909	miscRNA
chr19.8298161.-	chr19	8298161	8298162	-	0	NA	"intron (NM_024552, intron 2 of 11)"	AluSx|SINE|Alu	-23944	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
chr9.127200570.+	chr9	127200570	127200571	+	0	NA	Intergenic	Intergenic	-12853	NM_001161808	347088	Hs.454099	NM_001161808	ENSG00000180264	GPR144	PGR24	G protein-coupled receptor 144	protein-coding
chr17.37768967.+	chr17	37768967	37768968	+	0	NA	Intergenic	Intergenic	-4792	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr13.66584779.+	chr13	66584779	66584780	+	0	NA	Intergenic	AluY|SINE|Alu	-814522	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr17.6858344.-	chr17	6858344	6858345	-	0	NA	Intergenic	AluY|SINE|Alu	41040	NM_000697	239	Hs.654431	NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase	protein-coding
chr11.123499396.+	chr11	123499396	123499397	+	0	NA	TTS (NM_001040151)	TTS (NM_001040151)	25919	NM_018400	55800	Hs.743255	NM_001040151	ENSG00000166257	SCN3B	HSA243396|SCNB3	"sodium channel, voltage-gated, type III, beta subunit"	protein-coding
chr19.17836946.-	chr19	17836946	17836947	-	0	NA	"exon (NM_018174, exon 5 of 7)"	"exon (NM_018174, exon 5 of 7)"	-6643	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chr2.173776195.-	chr2	173776195	173776196	-	0	NA	"intron (NM_001100397, intron 1 of 27)"	AluSz|SINE|Alu	-89880	NM_001100397	11069	Hs.470646	NM_001100397	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding
chr12.96314632.-	chr12	96314632	96314633	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21796	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr3.22099275.-	chr3	22099275	22099276	-	0	NA	Intergenic	AluSx|SINE|Alu	306459	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr21.47403488.-	chr21	47403488	47403489	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1825	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr11.77200940.-	chr11	77200940	77200941	-	0	NA	Intergenic	SVA_D|Other|Other	15832	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr19.21489508.-	chr19	21489508	21489509	-	0	NA	"intron (NM_021269, intron 3 of 3)"	AluSg|SINE|Alu	-22704	NM_021269	7562	Hs.466296	NM_021269	ENSG00000182141	ZNF708	KOX8|ZNF15|ZNF15L1	zinc finger protein 708	protein-coding
chr10.8534191.+	chr10	8534191	8534192	+	0	NA	Intergenic	AluY|SINE|Alu	437524	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr1.23037402.-	chr1	23037402	23037403	-	0	NA	promoter-TSS (NM_004442)	promoter-TSS (NM_004442)	-71	NM_017449	2048	Hs.523329	NM_004442	ENSG00000133216	EPHB2	CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
chr2.68031671.-	chr2	68031671	68031672	-	0	NA	Intergenic	AluY|SINE|Alu	-258488	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr19.23432261.+	chr19	23432261	23432262	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	911	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr3.128161119.+	chr3	128161119	128161120	+	0	NA	Intergenic	Intergenic	-21318	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr6.55774918.-	chr6	55774918	55774919	-	0	NA	Intergenic	SVA_D|Other|Other	34543	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr2.99757805.-	chr2	99757805	99757806	-	0	NA	promoter-TSS (NM_144706)	promoter-TSS (NM_144706)	-232	NM_182911	80705	Hs.120267	NM_025244	ENSG00000135951	TSGA10	CEP4L|CT79	"testis specific, 10"	protein-coding
chr12.34492696.-	chr12	34492696	34492697	-	0	NA	Intergenic	GSATII|Satellite|centr	-317480	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr6.159416885.+	chr6	159416885	159416886	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4313	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr19.3193999.-	chr19	3193999	3194000	-	0	NA	"intron (NM_020170, intron 3 of 14)"	"intron (NM_020170, intron 3 of 14)"	-8124	NM_020170	56926	Hs.657032	NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
chr2.134028788.+	chr2	134028788	134028789	+	0	NA	"intron (NM_207363, intron 4 of 19)"	AluY|SINE|Alu	297243	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
chr3.109059741.+	chr3	109059741	109059742	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3322	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr2.85554097.+	chr2	85554097	85554098	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1322	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr4.16085262.-	chr4	16085262	16085263	-	0	NA	"intron (NM_001145848, intron 1 of 26)"	CpG	-332	NM_001145847	8842	Hs.614734	NM_001145847	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|PROML1|RP41|STGD4	prominin 1	protein-coding
chr2.24809071.-	chr2	24809071	24809072	-	0	NA	"intron (NM_003743, intron 1 of 20)"	AluSx1|SINE|Alu	-1725	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
chr2.120775535.+	chr2	120775535	120775536	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4750	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr7.532217.-	chr7	532217	532218	-	0	NA	Intergenic	Intergenic	-27264	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr7.155246288.+	chr7	155246288	155246289	+	0	NA	Intergenic	Intergenic	-4536	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr4.1626683.+	chr4	1626683	1626684	+	0	NA	Intergenic	CpG	59035	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr16.34257503.+	chr16	34257503	34257504	+	0	NA	Intergenic	CpG	147259	NR_002837	606551	Hs.646441	NR_002837		UBE2MP1	-	ubiquitin-conjugating enzyme E2M pseudogene 1	pseudo
chr2.111367813.+	chr2	111367813	111367814	+	0	NA	Intergenic	CpG	-31504	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr22.46326778.+	chr22	46326778	46326779	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46230	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr16.55553264.-	chr16	55553264	55553265	-	0	NA	"intron (NM_017839, intron 1 of 13)"	AluY|SINE|Alu	-10351	NM_017839	54947	Hs.460857	NM_017839	ENSG00000087253	LPCAT2	AYTL1|LysoPAFAT	lysophosphatidylcholine acyltransferase 2	protein-coding
chr14.103988596.-	chr14	103988596	103988597	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-600	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr5.14460487.+	chr5	14460487	14460488	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121404	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr4.87023929.+	chr4	87023929	87023930	+	0	NA	"intron (NM_138981, intron 1 of 8)"	AluSc8|SINE|Alu	4877	NM_138981	5602	Hs.125503	NM_002753	ENSG00000109339	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chr5.693678.+	chr5	693678	693679	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-168	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr3.127784745.+	chr3	127784745	127784746	+	0	NA	"intron (NM_013336, intron 8 of 11)"	AluSc8|SINE|Alu	13533	NM_013336	29927	Hs.518236	NM_013336	ENSG00000058262	SEC61A1	HSEC61|SEC61|SEC61A	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding
chr1.113336811.-	chr1	113336811	113336812	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73622	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr19.48888436.-	chr19	48888436	48888437	-	0	NA	"intron (NM_006801, intron 3 of 4)"	AluSx1|SINE|Alu	-6374	NM_006801	10945	Hs.515515	NM_006801	ENSG00000105438	KDELR1	ERD2|ERD2.1|HDEL|PM23	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding
chr1.101786818.+	chr1	101786818	101786819	+	0	NA	Intergenic	AluY|SINE|Alu	19633	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr12.12424677.+	chr12	12424677	12424678	+	0	NA	Intergenic	AluY|SINE|Alu	-4866	NM_002336	4040	Hs.658913	NM_002336	ENSG00000070018	LRP6	ADCAD2	low density lipoprotein receptor-related protein 6	protein-coding
chr9.137588940.+	chr9	137588940	137588941	+	0	NA	"intron (NM_000093, intron 2 of 65)"	"intron (NM_000093, intron 2 of 65)"	55288	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr1.156575149.+	chr1	156575149	156575150	+	0	NA	Intergenic	AluSx|SINE|Alu	-3870	NM_015590	54865	Hs.193832	NM_017725	ENSG00000160818	GPATCH4	GPATC4	G patch domain containing 4	protein-coding
chr9.35846395.+	chr9	35846395	35846396	+	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	-13876	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr14.103510755.+	chr14	103510755	103510756	+	0	NA	"intron (NM_006035, intron 1 of 36)"	AluSc8|SINE|Alu	12987	NM_006035	9578	Hs.654634	NM_006035	ENSG00000198752	CDC42BPB	MRCKB	CDC42 binding protein kinase beta (DMPK-like)	protein-coding
chr4.97092082.-	chr4	97092082	97092083	-	0	NA	Intergenic	AluSx1|SINE|Alu	-330843	NM_005390	5161	Hs.131361	NM_005390	ENSG00000163114	PDHA2	PDHAL	pyruvate dehydrogenase (lipoamide) alpha 2	protein-coding
chr19.13947978.-	chr19	13947978	13947979	-	0	NA	promoter-TSS (NR_036515)	promoter-TSS (NR_036515)	505	NR_029495	407010		NR_029495	ENSG00000207980	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A	microRNA 23a	miscRNA
chrX.48335026.+	chrX	48335026	48335027	+	0	NA	"5' UTR (NM_177439, exon 2 of 14)"	"5' UTR (NM_177439, exon 2 of 14)"	477	NM_177439	24140	Hs.23170	NM_012280	ENSG00000068438	FTSJ1	CDLIV|MRX44|MRX9|SPB1|TRM7|TRMT7	FtsJ RNA methyltransferase homolog 1 (E. coli)	protein-coding
chr10.133869112.+	chr10	133869112	133869113	+	0	NA	Intergenic	Intergenic	-49201	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr1.110881062.-	chr1	110881062	110881063	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-731	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr3.123619806.-	chr3	123619806	123619807	-	0	NA	Intergenic	AluSc8|SINE|Alu	16657	NM_053025	4638	Hs.477375	NM_053025	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
chr3.81337959.+	chr3	81337959	81337960	+	0	NA	Intergenic	AluY|SINE|Alu	472991	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr14.20811175.+	chr14	20811175	20811176	+	0	NA	promoter-TSS (NM_005484)	promoter-TSS (NM_005484)	395	NR_002312	85495	Hs.613102	NR_002312	ENSG00000252678	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	miscRNA
chr17.38400024.+	chr17	38400024	38400025	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24450	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr7.33164275.+	chr7	33164275	33164276	+	0	NA	Intergenic	AluYf5|SINE|Alu	-4877	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr2.230579948.-	chr2	230579948	230579949	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	662	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr17.12456641.-	chr17	12456641	12456642	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3356	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr16.31449020.-	chr16	31449020	31449021	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5328	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr10.119480865.+	chr10	119480865	119480866	+	0	NA	Intergenic	Intergenic	-176286	NR_002791	196047	Hs.312592	NR_002791		EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	miscRNA
chr7.532560.-	chr7	532560	532561	-	0	NA	Intergenic	Intergenic	-26921	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr11.47788897.-	chr11	47788897	47788898	-	0	NA	promoter-TSS (NM_015308)	promoter-TSS (NM_015308)	-96	NM_015308	23360	Hs.6834	NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
chr16.87787439.-	chr16	87787439	87787440	-	0	NA	"intron (NM_001184854, intron 2 of 9)"	AluSc8|SINE|Alu	-12159	NM_017566	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr16.70148620.-	chr16	70148620	70148621	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1091	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr6.145212731.+	chr6	145212731	145212732	+	0	NA	Intergenic	AluY|SINE|Alu	599858	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr4.84864624.+	chr4	84864624	84864625	+	0	NA	Intergenic	SVA_D|Other|Other	407154	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr10.104255182.+	chr10	104255182	104255183	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7330	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr12.132353181.+	chr12	132353181	132353182	+	0	NA	Intergenic	Intergenic	-26098	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr4.134408523.+	chr4	134408523	134408524	+	0	NA	Intergenic	AluY|SINE|Alu	338053	NM_020815	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr1.109995488.-	chr1	109995488	109995489	-	0	NA	Intergenic	AluY|SINE|Alu	13612	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr11.66997280.-	chr11	66997280	66997281	-	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	10226	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr17.8061035.-	chr17	8061035	8061036	-	0	NA	Intergenic	AluY|SINE|Alu	-5258	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr19.54097873.+	chr19	54097873	54097874	+	0	NA	Intergenic	Intergenic	8878	NR_002938	284379	Hs.631571	NR_002938	ENSG00000268864	LOC284379	-	"solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene"	pseudo
chr14.102954950.-	chr14	102954950	102954951	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21178	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr3.38180275.-	chr3	38180275	38180276	-	0	NA	"exon (NM_001172566, exon 1 of 3)"	"exon (NM_001172566, exon 1 of 3)"	-306	NM_002468	4615	Hs.82116	NM_001172566	ENSG00000172936	MYD88	MYD88D	myeloid differentiation primary response 88	protein-coding
chrX.103267864.-	chrX	103267864	103267865	-	0	NA	"exon (NM_001002916, exon 1 of 3)"	"exon (NM_001002916, exon 1 of 3)"	-392	NM_001002916	158983	Hs.127778	NM_001002916	ENSG00000123569	H2BFWT	-	"H2B histone family, member W, testis-specific"	protein-coding
chr21.43525946.-	chr21	43525946	43525947	-	0	NA	"intron (NM_001199528, intron 9 of 22)"	MLT1C|LTR|ERVL-MaLR	-2698	NR_027243	150147	Hs.558646	NM_152507	ENSG00000184385	C21orf128	-	chromosome 21 open reading frame 128	miscRNA
chr10.128174268.-	chr10	128174268	128174269	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35742	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr20.20772513.+	chr20	20772513	20772514	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79247	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr4.26862278.+	chr4	26862278	26862279	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-35	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr18.67270914.-	chr18	67270914	67270915	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202630	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chrM.6399.+	chrM	6399	6400	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.40953684.-	chr1	40953684	40953685	-	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	-10382	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr16.1845110.-	chr16	1845110	1845111	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	201	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr1.158060359.+	chr1	158060359	158060360	+	0	NA	"intron (NM_018240, intron 10 of 14)"	"intron (NM_018240, intron 10 of 14)"	50071	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	LOC646268	-	hCG1654703	miscRNA
chr16.89269031.+	chr16	89269031	89269032	+	0	NA	Intergenic	L1MB5|LINE|L1	-2502	NM_001242757	146429	Hs.743726	NM_001242757		SLC22A31	-	"solute carrier family 22, member 31"	protein-coding
chr1.217394773.-	chr1	217394773	217394774	-	0	NA	Intergenic	AluSq2|SINE|Alu	83676	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr19.50670107.-	chr19	50670107	50670108	-	0	NA	Intergenic	AluSg|SINE|Alu	3569	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr19.17585863.-	chr19	17585863	17585864	-	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	-4563	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr13.112547822.+	chr13	112547822	112547823	+	0	NA	Intergenic	CpG	-174091	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr6.70692582.+	chr6	70692582	70692583	+	0	NA	"intron (NM_001858, intron 11 of 50)"	L1M5|LINE|L1	116134	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr10.116070961.-	chr10	116070961	116070962	-	0	NA	"intron (NM_001001936, intron 7 of 18)"	"intron (NM_001001936, intron 7 of 18)"	-71948	NM_001272046	340706	Hs.197741	NM_001272046	ENSG00000165816	VWA2	AMACO|CCSP-2|NET42	von Willebrand factor A domain containing 2	protein-coding
chr12.110821736.-	chr12	110821736	110821737	-	0	NA	"intron (NM_016238, intron 6 of 10)"	AluSg4|SINE|Alu	-19799	NM_001137664	51434	Hs.719935	NM_001137664	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
chr6.108615130.-	chr6	108615130	108615131	-	0	NA	promoter-TSS (NM_145315)	promoter-TSS (NM_145315)	968	NM_145315	246269	Hs.259666	NM_145315		LACE1	AFG1	lactation elevated 1	protein-coding
chr6.18371785.-	chr6	18371785	18371786	-	0	NA	Intergenic	AluSx1|SINE|Alu	15796	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
chr17.67192586.-	chr17	67192586	67192587	-	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	-48370	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chrX.145183510.+	chrX	145183510	145183511	+	0	NA	Intergenic	AluJb|SINE|Alu	-74120	NR_030581	100126341		NR_030581	ENSG00000216056	MIR891A	MIRN891A	microRNA 891a	miscRNA
chr13.46489300.+	chr13	46489300	46489301	+	0	NA	Intergenic	MER52D|LTR|ERV1	-63454	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr5.178491487.+	chr5	178491487	178491488	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	3880	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr7.146601856.+	chr7	146601856	146601857	+	0	NA	"intron (NM_014141, intron 3 of 23)"	AluY|SINE|Alu	-42052	NR_049838	100847078		NR_049838		MIR548AQ	-	microRNA 548aq	miscRNA
chr7.56143790.+	chr7	56143790	56143791	+	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	11873	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr16.30773156.-	chr16	30773156	30773157	-	0	NA	TTS (NM_001172432)	TTS (NM_001172432)	-223	NM_001207034	9810	Hs.65238	NM_001207033	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	"ring finger protein 40, E3 ubiquitin protein ligase"	protein-coding
chr3.48117734.-	chr3	48117734	48117735	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-13035	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr22.51142884.+	chr22	51142884	51142885	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29814	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr19.46216094.-	chr19	46216094	46216095	-	0	NA	"exon (NM_001080469, exon 2 of 2)"	"exon (NM_001080469, exon 2 of 2)"	-18057	NM_001080469	23403	Hs.128702	NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
chr17.29030319.-	chr17	29030319	29030320	-	0	NA	Intergenic	AluSx|SINE|Alu	6307	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
chr8.86574476.+	chr8	86574476	86574477	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	266	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr9.137200933.-	chr9	137200933	137200934	-	0	NA	Intergenic	Intergenic	17383	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr10.46970885.-	chr10	46970885	46970886	-	0	NA	promoter-TSS (NM_031912)	promoter-TSS (NM_031912)	284	NM_181519	83849	Hs.696346	NM_031912	ENSG00000204176	SYT15	CHR10SYT|sytXV	synaptotagmin XV	protein-coding
chr8.107670055.-	chr8	107670055	107670056	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-19	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr15.66993582.+	chr15	66993582	66993583	+	0	NA	Intergenic	CpG	-1092	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr18.5524254.+	chr18	5524254	5524255	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19732	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr10.32238887.+	chr10	32238887	32238888	+	0	NA	Intergenic	AluY|SINE|Alu	-21083	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr8.104115241.-	chr8	104115241	104115242	-	0	NA	Intergenic	AluSp|SINE|Alu	37680	NM_024812	79870	Hs.533446	NM_001024372	ENSG00000164929	BAALC	-	"brain and acute leukemia, cytoplasmic"	protein-coding
chr7.124427218.-	chr7	124427218	124427219	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3646	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr12.109325556.+	chr12	109325556	109325557	+	0	NA	"intron (NM_018711, intron 10 of 14)"	AluY|SINE|Alu	51699	NM_001917	1610	Hs.113227	NM_001917	ENSG00000110887	DAO	DAAO|DAMOX|OXDA	D-amino-acid oxidase	protein-coding
chr8.125234428.-	chr8	125234428	125234429	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150512	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr5.2860469.-	chr5	2860469	2860470	-	0	NA	Intergenic	Intergenic	-108207	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr8.7414129.+	chr8	7414129	7414130	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2497	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr2.905555.-	chr2	905555	905556	-	0	NA	Intergenic	Intergenic	40999	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr19.35418180.-	chr19	35418180	35418181	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-373	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr5.92909980.+	chr5	92909980	92909981	+	0	NA	"intron (NR_021491, intron 1 of 5)"	"intron (NR_021491, intron 1 of 5)"	-3481	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr12.49772281.+	chr12	49772281	49772282	+	0	NA	"intron (NM_023071, intron 2 of 13)"	AluSc8|SINE|Alu	-10676	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr9.76966054.+	chr9	76966054	76966055	+	0	NA	Intergenic	AluSp|SINE|Alu	-146198	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr14.51173177.+	chr14	51173177	51173178	+	0	NA	Intergenic	AluYa5|SINE|Alu	-38106	NM_021818	60485	Hs.706933	NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador homolog 1 (Drosophila)	protein-coding
chr20.11974572.-	chr20	11974572	11974573	-	0	NA	Intergenic	AluY|SINE|Alu	-76007	NM_014962	22903	Hs.709366	NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
chrX.38186749.+	chrX	38186749	38186750	+	0	NA	promoter-TSS (NM_001034853)	promoter-TSS (NM_001034853)	39	NM_001034853	6103	Hs.61438	NM_000328	ENSG00000156313	RPGR	COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15	retinitis pigmentosa GTPase regulator	protein-coding
chr5.112263688.+	chr5	112263688	112263689	+	0	NA	Intergenic	AluY|SINE|Alu	-5657	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr20.4699536.-	chr20	4699536	4699537	-	0	NA	Intergenic	AluSc8|SINE|Alu	3020	NM_012409	23627	Hs.406696	NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion protein 2 (dublet)	protein-coding
chr7.5396287.+	chr7	5396287	5396288	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66890	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr3.73262580.-	chr3	73262580	73262581	-	0	NA	Intergenic	AluY|SINE|Alu	-151770	NM_018029	55096	Hs.658858	NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
chr16.51185809.+	chr16	51185809	51185810	+	0	NA	promoter-TSS (NM_002968)	promoter-TSS (NM_002968)	-626	NM_002968	6299	Hs.135787	NM_001127892	ENSG00000103449	SALL1	HSAL1|Sal-1|TBS|ZNF794	sal-like 1 (Drosophila)	protein-coding
chr12.122685338.+	chr12	122685338	122685339	+	0	NA	"exon (NM_001098519, exon 10 of 12)"	"exon (NM_001098519, exon 10 of 12)"	-2890	NM_030765	79369	Hs.363315	NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4"	protein-coding
chr13.45131246.+	chr13	45131246	45131247	+	0	NA	"intron (NM_183422, intron 1 of 2)"	AluSp|SINE|Alu	-18786	NR_038381	641467	Hs.624196	NR_038381		TSC22D1-AS1	-	TSC22D1 antisense RNA 1	miscRNA
chr13.51885839.-	chr13	51885839	51885840	-	0	NA	Intergenic	AluSx|SINE|Alu	29329	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr8.3825564.-	chr8	3825564	3825565	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026764	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr15.40258641.+	chr15	40258641	40258642	+	0	NA	"intron (NM_001013703, intron 8 of 38)"	AluJb|SINE|Alu	32294	NM_001013703	440275	Hs.656673	NM_001013703	ENSG00000128829	EIF2AK4	GCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
chr13.24884230.+	chr13	24884230	24884231	+	0	NA	"intron (NM_178540, intron 1 of 3)"	AluSg7|SINE|Alu	514	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chrX.129230999.-	chrX	129230999	129231000	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13476	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr1.188418109.+	chr1	188418109	188418110	+	0	NA	Intergenic	AluY|SINE|Alu	1620077	NM_024420	5321	Hs.497200	NM_024420	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2-alpha	"phospholipase A2, group IVA (cytosolic, calcium-dependent)"	protein-coding
chr15.41613497.-	chr15	41613497	41613498	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11322	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr2.29033008.+	chr2	29033008	29033009	+	0	NA	promoter-TSS (NM_001142634)	promoter-TSS (NM_001142634)	-692	NM_182756	245711	Hs.511956	NM_001008779	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy homolog A (Xenopus laevis)	protein-coding
chr12.122667619.-	chr12	122667619	122667620	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	48	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr11.7975905.+	chr11	7975905	7975906	+	0	NA	Intergenic	AluY|SINE|Alu	9154	NM_176821	338322	Hs.449636	NM_176821	ENSG00000182261	NLRP10	CLR11.1|NALP10|NOD8|PAN5|PYNOD	"NLR family, pyrin domain containing 10"	protein-coding
chr6.4780638.+	chr6	4780638	4780639	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3958	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr12.131551495.-	chr12	131551495	131551496	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98061	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr6.85476325.+	chr6	85476325	85476326	+	0	NA	Intergenic	Intergenic	-2371	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr17.1133486.+	chr17	1133486	1133487	+	0	NA	Intergenic	AluJb|SINE|Alu	-40372	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr3.29288077.-	chr3	29288077	29288078	-	0	NA	Intergenic	AluY|SINE|Alu	34726	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr12.33592880.-	chr12	33592880	33592881	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	126	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr19.10041243.+	chr19	10041243	10041244	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5827	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chrX.86663498.+	chrX	86663498	86663499	+	0	NA	Intergenic	AluSz|SINE|Alu	-109217	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr15.78423584.-	chr15	78423584	78423585	-	0	NA	"5' UTR (NM_006383, exon 1 of 6)"	"5' UTR (NM_006383, exon 1 of 6)"	-293	NM_001271889	10518	Hs.129867	NM_001271888	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
chr3.184790729.+	chr3	184790729	184790730	+	0	NA	Intergenic	Intergenic	80073	NM_001025266	285382	Hs.380048	NM_001025266	ENSG00000187068	C3orf70	-	chromosome 3 open reading frame 70	protein-coding
chr4.114652901.-	chr4	114652901	114652902	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30182	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr5.57859398.-	chr5	57859398	57859399	-	0	NA	Intergenic	SVA_A|Other|Other	19541	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr1.183054132.-	chr1	183054132	183054133	-	0	NA	"intron (NM_002293, intron 1 of 27)"	AluSg|SINE|Alu	-61537	NM_002293	3915	Hs.609663	NM_002293	ENSG00000135862	LAMC1	LAMB2	"laminin, gamma 1 (formerly LAMB2)"	protein-coding
chr4.114652891.+	chr4	114652891	114652892	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30192	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr20.18241964.+	chr20	18241964	18241965	+	0	NA	Intergenic	AluSp|SINE|Alu	-27157	NM_003434	7692	Hs.472221	NM_001083330	ENSG00000125846	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
chr6.43197172.-	chr6	43197172	43197173	-	0	NA	promoter-TSS (NM_199184)	promoter-TSS (NM_199184)	-39	NM_199184	10591	Hs.109752	NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|RP3-330M21.3|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
chr1.145400442.-	chr1	145400442	145400443	-	0	NA	Intergenic	AluSq2|SINE|Alu	12749	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr6.12012484.+	chr6	12012484	12012485	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-240	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr22.22259606.-	chr22	22259606	22259607	-	0	NA	Intergenic	AluSq2|SINE|Alu	37636	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr8.58121623.+	chr8	58121623	58121624	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-10025	NR_038235	100507651	Hs.631151	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	miscRNA
chr1.215257098.+	chr1	215257098	215257099	+	0	NA	"intron (NM_001017425, intron 1 of 6)"	"intron (NM_001017425, intron 1 of 6)"	538	NM_014217	3776	Hs.497745	NM_001017424	ENSG00000082482	KCNK2	K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e	"potassium channel, subfamily K, member 2"	protein-coding
chr15.90327963.+	chr15	90327963	90327964	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8374	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr20.48080583.+	chr20	48080583	48080584	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18598	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr1.99470458.+	chr1	99470458	99470459	+	0	NA	promoter-TSS (NM_001010861)	promoter-TSS (NM_001010861)	-9	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr7.35734527.-	chr7	35734527	35734528	-	0	NA	"5' UTR (NM_022373, exon 1 of 9)"	"5' UTR (NM_022373, exon 1 of 9)"	-245	NM_022373	64224	Hs.744217	NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
chr6.167607657.-	chr6	167607657	167607658	-	0	NA	Intergenic	Intergenic	-23576	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr16.58300829.+	chr16	58300829	58300830	+	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	16989	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr4.1723287.+	chr4	1723287	1723288	+	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	70	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr2.237068281.+	chr2	237068281	237068282	+	0	NA	Intergenic	CpG	8371	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr10.135031505.+	chr10	135031505	135031506	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12273	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr6.126111989.-	chr6	126111989	126111990	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-80	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr19.3619697.+	chr19	3619697	3619698	+	0	NA	"intron (NM_021231, intron 4 of 10)"	"intron (NM_021231, intron 4 of 10)"	7116	NM_001080543	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr4.140781153.+	chr4	140781153	140781154	+	0	NA	"intron (NM_018717, intron 3 of 5)"	CpG	194231	NM_002413	4258	Hs.81874	NM_001204366	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
chr17.57645279.-	chr17	57645279	57645280	-	0	NA	"intron (NM_024612, intron 2 of 17)"	AluY|SINE|Alu	-2393	NM_024612	79665	Hs.29403	XM_003846599	ENSG00000108406	DHX40	DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding
chr16.75246295.+	chr16	75246295	75246296	+	0	NA	Intergenic	Intergenic	-5223	NM_001025200	440387	Hs.632211	NM_001025200	ENSG00000168928	CTRB2	-	chymotrypsinogen B2	protein-coding
chr19.1045822.+	chr19	1045822	1045823	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5720	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr17.7246065.+	chr17	7246065	7246066	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6217	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr1.32679385.-	chr1	32679385	32679386	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4690	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr2.70199638.+	chr2	70199638	70199639	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10241	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chrX.7055271.+	chrX	7055271	7055272	+	0	NA	"intron (NM_001135565, intron 1 of 4)"	AluSq2|SINE|Alu	-10630	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr7.1474508.+	chr7	1474508	1474509	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24601	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr10.125228169.-	chr10	125228169	125228170	-	0	NA	Intergenic	AluY|SINE|Alu	197702	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr18.63211136.-	chr18	63211136	63211137	-	0	NA	Intergenic	AluY|SINE|Alu	206352	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr10.99006877.-	chr10	99006877	99006878	-	0	NA	"intron (NM_001204300, intron 5 of 10)"	AluSq2|SINE|Alu	-23570	NM_001256423	84986	Hs.80305	NM_001204300	ENSG00000213390	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
chr3.126260574.+	chr3	126260574	126260575	+	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	17184	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr3.112808014.-	chr3	112808014	112808015	-	0	NA	Intergenic	AluYc|SINE|Alu	69459	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr1.237205449.+	chr1	237205449	237205450	+	0	NA	promoter-TSS (NM_001035)	promoter-TSS (NM_001035)	-253	NM_001035	6262	Hs.738571	NM_001035	ENSG00000198626	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
chr8.94702746.+	chr8	94702746	94702747	+	0	NA	"intron (NR_033858, intron 1 of 10)"	AluSq2|SINE|Alu	9915	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	miscRNA
chr10.118500914.+	chr10	118500914	118500915	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1171	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr15.90792660.+	chr15	90792660	90792661	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-104	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr12.57177816.-	chr12	57177816	57177817	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20708	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr9.34628952.+	chr9	34628952	34628953	+	0	NA	promoter-TSS (NM_001017363)	promoter-TSS (NM_001017363)	-941	NM_001017363	138715	Hs.534549	NM_001017363	ENSG00000205143	ARID3C	-	AT rich interactive domain 3C (BRIGHT-like)	protein-coding
chr18.33543828.+	chr18	33543828	33543829	+	0	NA	Intergenic	AluY|SINE|Alu	-8760	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr2.211494532.-	chr2	211494532	211494533	-	0	NA	"intron (NM_001122634, intron 11 of 27)"	AluY|SINE|Alu	-12237	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	miscRNA
chr21.31598699.+	chr21	31598699	31598700	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10230	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr7.56143775.-	chr7	56143775	56143776	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11858	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr8.22308537.-	chr8	22308537	22308538	-	0	NA	"intron (NM_001243975, intron 1 of 12)"	AluY|SINE|Alu	-10054	NM_001243974	5533	Hs.731683	NM_001243974	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	"protein phosphatase 3, catalytic subunit, gamma isozyme"	protein-coding
chr7.5610949.+	chr7	5610949	5610950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21487	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr2.239058262.-	chr2	239058262	239058263	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10899	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr5.2391240.-	chr5	2391240	2391241	-	0	NA	Intergenic	Intergenic	-360529	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr2.210525402.+	chr2	210525402	210525403	+	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	80999	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr11.57281785.+	chr11	57281785	57281786	+	0	NA	"intron (NM_003627, intron 1 of 14)"	CpG	573	NM_001198810	8501	Hs.735724	NM_001198810	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	"solute carrier family 43, member 1"	protein-coding
chr11.69518675.+	chr11	69518675	69518676	+	0	NA	"5' UTR (NM_005117, exon 1 of 3)"	"5' UTR (NM_005117, exon 1 of 3)"	431	NM_005117	9965	Hs.249200	NM_005117	ENSG00000162344	FGF19	-	fibroblast growth factor 19	protein-coding
chrX.26892077.-	chrX	26892077	26892078	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-315623	NR_001559	139538	Hs.447377	NR_001559	ENSG00000259849	VENTXP1	CT18|NA88A|VENTX2P1	VENT homeobox pseudogene 1	pseudo
chr16.8781094.-	chr16	8781094	8781095	-	0	NA	"intron (NM_020686, intron 1 of 15)"	"intron (NM_020686, intron 1 of 15)"	-12650	NM_020686	18	Hs.336768	NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
chr7.560586.-	chr7	560586	560587	-	0	NA	"non-coding (NR_033963, exon 1 of 3)"	"non-coding (NR_033963, exon 1 of 3)"	-558	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr2.120964340.+	chr2	120964340	120964341	+	0	NA	Intergenic	Intergenic	16644	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr13.21872304.-	chr13	21872304	21872305	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-40	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr19.2492323.-	chr19	2492323	2492324	-	0	NA	Intergenic	AluSz|SINE|Alu	-16200	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr11.63286717.+	chr11	63286717	63286718	+	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	11258	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr6.167607689.-	chr6	167607689	167607690	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23608	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr8.21101042.-	chr8	21101042	21101043	-	0	NA	Intergenic	AluYb8|SINE|Alu	-269545	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr5.156492146.-	chr5	156492146	156492147	-	0	NA	Intergenic	AluY|SINE|Alu	6176	NM_001173393	26762	Hs.129711	NM_001099414	ENSG00000113249	HAVCR1	HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
chr17.22012692.-	chr17	22012692	22012693	-	0	NA	Intergenic	Intergenic	9745	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr13.20343701.+	chr13	20343701	20343702	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13458	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr2.232202232.-	chr2	232202232	232202233	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25187	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr9.139024680.+	chr9	139024680	139024681	+	0	NA	Intergenic	CpG	-13949	NM_152833	90120	Hs.287411	NM_001256526	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
chr19.14776075.+	chr19	14776075	14776076	+	0	NA	"intron (NM_032571, intron 2 of 15)"	AluY|SINE|Alu	9655	NM_032571	84658	Hs.658712	NM_032571	ENSG00000131355	EMR3	-	"egf-like module containing, mucin-like, hormone receptor-like 3"	protein-coding
chr2.133015899.-	chr2	133015899	133015900	-	0	NA	promoter-TSS (NR_027020)	promoter-TSS (NR_027020)	357	NR_027020	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B-like	pseudo
chrX.109043317.-	chrX	109043317	109043318	-	0	NA	Intergenic	AluY|SINE|Alu	66696	NM_004458	2182	Hs.268785	NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
chr17.30863331.+	chr17	30863331	30863332	+	0	NA	"intron (NM_015194, intron 21 of 21)"	AluSz|SINE|Alu	49226	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	"cyclin-dependent kinase 5, regulatory subunit 1 (p35)"	protein-coding
chr2.213546679.+	chr2	213546679	213546680	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143327	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr3.128194314.-	chr3	128194314	128194315	-	0	NA	Intergenic	Intergenic	8223	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr1.228733844.-	chr1	228733844	228733845	-	0	NA	Intergenic	HSAT4|Satellite|centr	46550	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr4.2878513.-	chr4	2878513	2878514	-	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	-32929	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr1.145400443.+	chr1	145400443	145400444	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12748	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr9.139028958.-	chr9	139028958	139028959	-	0	NA	Intergenic	MIRb|SINE|MIR	18227	NM_152833	90120	Hs.287411	NM_001256526	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
chr5.170687209.-	chr5	170687209	170687210	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49079	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr6.11538063.-	chr6	11538063	11538064	-	0	NA	promoter-TSS (NM_001100829)	promoter-TSS (NM_001100829)	397	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
chr19.267133.+	chr19	267133	267134	+	0	NA	Intergenic	CpG	24036	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr8.143240113.-	chr8	143240113	143240114	-	0	NA	Intergenic	Intergenic	17587	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr14.104313435.+	chr14	104313435	104313436	+	0	NA	promoter-TSS (NR_038436)	promoter-TSS (NR_038436)	492	NM_015316	23368	Hs.709297	NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	"protein phosphatase 1, regulatory subunit 13B"	protein-coding
chr4.81796716.+	chr4	81796716	81796717	+	0	NA	"intron (NM_001206997, intron 5 of 6)"	AluSq2|SINE|Alu	-155403	NM_001201	651	Hs.387411	NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
chr9.92014671.-	chr9	92014671	92014672	-	0	NA	"intron (NM_001142287, intron 6 of 20)"	AluSx1|SINE|Alu	-79940	NM_006378	10507	Hs.494406	NM_182635	ENSG00000187764	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D"	protein-coding
chr1.32679378.+	chr1	32679378	32679379	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4683	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr7.1570699.-	chr7	1570699	1570700	-	0	NA	"intron (NM_002360, intron 1 of 2)"	CpG	-331	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr2.27526299.+	chr2	27526299	27526300	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4831	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr3.136117036.+	chr3	136117036	136117037	+	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	147869	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr10.123791046.-	chr10	123791046	123791047	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42357	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr5.171741593.+	chr5	171741593	171741594	+	0	NA	Intergenic	AluSx1|SINE|Alu	-30798	NM_152277	92181	Hs.131570	NM_152277	ENSG00000168246	UBTD2	DCUBP	ubiquitin domain containing 2	protein-coding
chr11.67351075.-	chr11	67351075	67351076	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-9	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr6.58779194.+	chr6	58779194	58779195	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-491470	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr6.149498812.+	chr6	149498812	149498813	+	0	NA	Intergenic	AluY|SINE|Alu	-140624	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr10.81319160.+	chr10	81319160	81319161	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	1003	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr17.18179013.-	chr17	18179013	18179014	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14589	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr22.35777069.+	chr22	35777069	35777070	+	0	NA	promoter-TSS (NM_002133)	promoter-TSS (NM_002133)	9	NM_002133	3162	Hs.517581	NM_002133	ENSG00000100292	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase (decycling) 1	protein-coding
chr10.135031500.-	chr10	135031500	135031501	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12278	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr12.112407428.+	chr12	112407428	112407429	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43595	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr5.178658010.-	chr5	178658010	178658011	-	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	-114421	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr19.2432760.+	chr19	2432760	2432761	+	0	NA	"intron (NM_032737, intron 8 of 11)"	"intron (NM_032737, intron 8 of 11)"	-4885	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr17.80376641.-	chr17	80376641	80376642	-	0	NA	promoter-TSS (NM_024648)	promoter-TSS (NM_024648)	128	NM_175902	79701	Hs.187505	NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
chrX.69654766.-	chrX	69654766	69654767	-	0	NA	Intergenic	Intergenic	9939	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr2.198843123.-	chr2	198843123	198843124	-	0	NA	"intron (NM_006226, intron 1 of 5)"	AluY|SINE|Alu	-173697	NM_006226	5334	Hs.153322	NM_006226		PLCL1	PLCE|PLCL|PLDL1|PRIP	phospholipase C-like 1	protein-coding
chr12.66636823.-	chr12	66636823	66636824	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53845	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr14.106321855.-	chr14	106321855	106321856	-	0	NA	Intergenic	CpG	61983	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr10.35559765.+	chr10	35559765	35559766	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23812	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr22.26439768.+	chr22	26439768	26439769	+	0	NA	Intergenic	AluSx3|SINE|Alu	-125672	NM_001184773	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr1.109995545.+	chr1	109995545	109995546	+	0	NA	Intergenic	AluY|SINE|Alu	-13555	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr19.14156298.+	chr19	14156298	14156299	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13673	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr9.138397733.+	chr9	138397733	138397734	+	0	NA	Intergenic	Intergenic	5256	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr11.69189621.+	chr11	69189621	69189622	+	0	NA	Intergenic	Intergenic	127999	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chrX.53111701.+	chrX	53111701	53111702	+	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	159	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.213546702.-	chr2	213546702	213546703	-	0	NA	Intergenic	AluSc8|SINE|Alu	143350	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chrX.9366097.+	chrX	9366097	9366098	+	0	NA	Intergenic	AluY|SINE|Alu	-65238	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr1.15927953.-	chr1	15927953	15927954	-	0	NA	Intergenic	AluSg4|SINE|Alu	16000	NM_032341	84301	Hs.718857	NM_032341		DDI2	RP4-680D5.5	DNA-damage inducible 1 homolog 2 (S. cerevisiae)	protein-coding
chr2.90481155.+	chr2	90481155	90481156	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1366820	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr11.617545.+	chr11	617545	617546	+	0	NA	"exon (NM_001171968, exon 15 of 15)"	"exon (NM_001171968, exon 15 of 15)"	-1546	NM_001572	3665	Hs.166120	NM_001572	ENSG00000185507	IRF7	IRF-7H|IRF7A	interferon regulatory factor 7	protein-coding
chr4.177146921.-	chr4	177146921	177146922	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30099	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr2.38870496.-	chr2	38870496	38870497	-	0	NA	Intergenic	LTR12C|LTR|ERV1	22556	NM_138801	130589	Hs.435012	NM_138801	ENSG00000143891	GALM	IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
chr11.92637330.-	chr11	92637330	92637331	-	0	NA	Intergenic	AluY|SINE|Alu	65459	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr17.74894592.-	chr17	74894592	74894593	-	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	-25863	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr22.43718246.+	chr22	43718246	43718247	+	0	NA	"intron (NM_173050, intron 2 of 21)"	AluSc8|SINE|Alu	21148	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chrX.53111605.+	chrX	53111605	53111606	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	63	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr10.59351282.-	chr10	59351282	59351283	-	0	NA	Intergenic	AluY|SINE|Alu	286963	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr12.115125114.+	chr12	115125114	115125115	+	0	NA	Intergenic	CpG	-3145	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
chr16.70148628.-	chr16	70148628	70148629	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1099	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr11.16635402.-	chr11	16635402	16635403	-	0	NA	Intergenic	CpG	124746	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chrX.68956244.+	chrX	68956244	68956245	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120333	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr3.128161149.-	chr3	128161149	128161150	-	0	NA	Intergenic	Intergenic	21288	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr9.12352815.+	chr9	12352815	12352816	+	0	NA	Intergenic	AluY|SINE|Alu	-340571	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr4.27215131.-	chr4	27215131	27215132	-	0	NA	Intergenic	AluY|SINE|Alu	-352818	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr5.34007933.-	chr5	34007933	34007934	-	0	NA	"exon (NM_203382, exon 1 of 4)"	"exon (NM_203382, exon 1 of 4)"	-287	NM_001167595	23600	Hs.508343	NM_001167595	ENSG00000242110	AMACR	AMACRD|CBAS4|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
chr4.69790971.-	chr4	69790971	69790972	-	0	NA	Intergenic	AluY|SINE|Alu	-26538	NR_024010	79799	Hs.122583	NM_024743	ENSG00000135220	UGT2A3	-	"UDP glucuronosyltransferase 2 family, polypeptide A3"	protein-coding
chr5.1067298.-	chr5	1067298	1067299	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4209	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chrX.48871412.-	chrX	48871412	48871413	-	0	NA	Intergenic	AluY|SINE|Alu	12737	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr3.49479463.-	chr3	49479463	49479464	-	0	NA	Intergenic	AluSx1|SINE|Alu	12706	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr19.3220517.+	chr19	3220517	3220518	+	0	NA	Intergenic	AluSc|SINE|Alu	-4184	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr20.62509207.+	chr20	62509207	62509208	+	0	NA	"intron (NR_045090, intron 4 of 6)"	CpG	12626	NM_001243892	7165	Hs.473296	NM_001243891	ENSG00000101150	TPD52L2	D54	tumor protein D52-like 2	protein-coding
chrM.6394.+	chrM	6394	6395	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr11.122809905.-	chr11	122809905	122809906	-	0	NA	"intron (NM_024806, intron 5 of 8)"	AluSc|SINE|Alu	-42474	NM_001098169	390259	Hs.449687	NM_001098169	ENSG00000188909	BSX	BSX1	brain-specific homeobox	protein-coding
chr5.68358810.-	chr5	68358810	68358811	-	0	NA	Intergenic	SVA_D|Other|Other	30966	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr15.75871323.+	chr15	75871323	75871324	+	0	NA	"5' UTR (NM_002833, exon 1 of 13)"	"5' UTR (NM_002833, exon 1 of 13)"	302	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	"protein tyrosine phosphatase, non-receptor type 9"	protein-coding
chr17.3820273.+	chr17	3820273	3820274	+	0	NA	promoter-TSS (NM_002558)	promoter-TSS (NM_002558)	-313	NM_002558	5023	Hs.41735	NM_002558	ENSG00000108405	P2RX1	P2X1	"purinergic receptor P2X, ligand-gated ion channel, 1"	protein-coding
chr16.81849428.-	chr16	81849428	81849429	-	0	NA	"intron (NM_002661, intron 2 of 32)"	AluSz|SINE|Alu	-36529	NM_002661	5336	Hs.413111	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3	"phospholipase C, gamma 2 (phosphatidylinositol-specific)"	protein-coding
chr8.1312670.-	chr8	1312670	1312671	-	0	NA	Intergenic	Intergenic	61843	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr12.31575324.-	chr12	31575324	31575325	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96165	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr10.95753423.+	chr10	95753423	95753424	+	0	NA	promoter-TSS (NM_016341)	promoter-TSS (NM_016341)	-323	NM_016341	51196	Hs.655033	NM_001165979	ENSG00000138193	PLCE1	NPHS3|PLCE|PPLC	"phospholipase C, epsilon 1"	protein-coding
chr2.198058504.-	chr2	198058504	198058505	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117017	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr8.33580507.-	chr8	33580507	33580508	-	0	NA	Intergenic	CpG	123068	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
chr4.177146930.+	chr4	177146930	177146931	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30108	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr2.130902790.-	chr2	130902790	130902791	-	0	NA	promoter-TSS (NM_001258307)	promoter-TSS (NM_001258307)	83	NM_207310	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chr11.71702910.-	chr11	71702910	71702911	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7048	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr19.34623454.+	chr19	34623454	34623455	+	0	NA	Intergenic	SVA_D|Other|Other	-39898	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr15.63892672.+	chr15	63892672	63892673	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	354	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr12.6890570.+	chr12	6890570	6890571	+	0	NA	Intergenic	AluJr4|SINE|Alu	-8068	NM_001195015	920	Hs.631659	NM_000616	ENSG00000010610	CD4	CD4mut	CD4 molecule	protein-coding
chr7.821225.-	chr7	821225	821226	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33969	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr17.38406641.-	chr17	38406641	38406642	-	0	NA	"intron (NM_133264, intron 1 of 7)"	AluY|SINE|Alu	-31067	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr5.675424.-	chr5	675424	675425	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18086	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr21.47403510.-	chr21	47403510	47403511	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1847	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr10.86331214.-	chr10	86331214	86331215	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-242804	NM_018999	54462	Hs.461988	NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
chr17.18575673.+	chr17	18575673	18575674	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	821	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr5.178032040.-	chr5	178032040	178032041	-	0	NA	"intron (NM_020666, intron 11 of 12)"	AluSx1|SINE|Alu	14484	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr4.96097938.+	chr4	96097938	96097939	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85296	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr20.18441238.-	chr20	18441238	18441239	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6591	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr17.43255896.-	chr17	43255896	43255897	-	0	NA	Intergenic	AluY|SINE|Alu	-17632	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr17.2721909.+	chr17	2721909	2721910	+	0	NA	"intron (NM_015085, intron 2 of 24)"	AluSz|SINE|Alu	22177	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr6.82962318.-	chr6	82962318	82962319	-	0	NA	Intergenic	AluSq2|SINE|Alu	4870	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI|RP1-93K22.1	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
chr14.64299486.-	chr14	64299486	64299487	-	0	NA	Intergenic	AluJb|SINE|Alu	20197	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr7.1286179.-	chr7	1286179	1286180	-	0	NA	Intergenic	CpG	-13525	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr12.42632415.+	chr12	42632415	42632416	+	0	NA	promoter-TSS (NR_034000)	promoter-TSS (NR_034000)	-261	NM_005748	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr17.74448667.+	chr17	74448667	74448668	+	0	NA	promoter-TSS (NM_001166579)	promoter-TSS (NM_001166579)	621	NM_022066	63893	Hs.16130	NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin-conjugating enzyme E2O	protein-coding
chr12.132116758.+	chr12	132116758	132116759	+	0	NA	Intergenic	L1ME1|LINE|L1	-78874	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr3.13876350.+	chr3	13876350	13876351	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45268	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr16.89895072.-	chr16	89895072	89895073	-	0	NA	"exon (NM_032451, exon 1 of 15)"	"exon (NM_032451, exon 1 of 15)"	-165	NM_032451	84501	Hs.461786	NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire homolog 2 (Drosophila)	protein-coding
chr16.53446767.+	chr16	53446767	53446768	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-21584	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr6.76458923.-	chr6	76458923	76458924	-	0	NA	promoter-TSS (NM_004999)	promoter-TSS (NM_004999)	-14	NM_004999	4646	Hs.149387	NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
chr13.111285565.+	chr13	111285565	111285566	+	0	NA	"intron (NR_040103, intron 5 of 9)"	LTR12C|LTR|ERV1	17634	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr2.190650614.+	chr2	190650614	190650615	+	0	NA	"intron (NM_001128144, intron 1 of 11)"	AluSx|SINE|Alu	-1517	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr7.5244736.-	chr7	5244736	5244737	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9164	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr14.105736153.-	chr14	105736153	105736154	-	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	20412	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chrX.142432458.-	chrX	142432458	142432459	-	0	NA	Intergenic	AluSx1|SINE|Alu	-172849	NM_001009609	139067	Hs.447320	NM_001009609	ENSG00000189252	SPANXN3	CT11.8|SPANX-N3	"SPANX family, member N3"	protein-coding
chr17.4697269.-	chr17	4697269	4697270	-	0	NA	Intergenic	AluY|SINE|Alu	2170	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr1.100493685.-	chr1	100493685	100493686	-	0	NA	Intergenic	AluSx|SINE|Alu	10104	NM_033055	64645	Hs.124156	NM_033055	ENSG00000156875	HIAT1	-	hippocampus abundant transcript 1	protein-coding
chr7.100963632.+	chr7	100963632	100963633	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1461	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr13.21872294.+	chr13	21872294	21872295	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	30	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr8.56013946.+	chr8	56013946	56013947	+	0	NA	Intergenic	CpG	-1071	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr1.109995464.+	chr1	109995464	109995465	+	0	NA	Intergenic	AluY|SINE|Alu	-13636	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr7.77452585.+	chr7	77452585	77452586	+	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	-16862	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr6.66681588.-	chr6	66681588	66681589	-	0	NA	Intergenic	L1PA3|LINE|L1	-183816	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	"solute carrier family 25, member 51 pseudogene 1"	pseudo
chr12.132606801.-	chr12	132606801	132606802	-	0	NA	"intron (NR_003290, intron 8 of 9)"	"intron (NR_003290, intron 8 of 9)"	-22079	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr15.90470266.+	chr15	90470266	90470267	+	0	NA	Intergenic	AluY|SINE|Alu	-14044	NM_182616	348110	Hs.6734	NM_182616		C15orf38	-	chromosome 15 open reading frame 38	protein-coding
chr20.1317941.+	chr20	1317941	1317942	+	0	NA	"intron (NR_040047, intron 1 of 2)"	MIR|SINE|MIR	-8062	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr7.56109491.-	chr7	56109491	56109492	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9777	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr3.128362572.-	chr3	128362572	128362573	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7147	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr16.22675494.-	chr16	22675494	22675495	-	0	NA	Intergenic	AluJr|SINE|Alu	54109	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr4.55034915.-	chr4	55034915	55034916	-	0	NA	Intergenic	AluSx3|SINE|Alu	60349	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr21.44333030.-	chr21	44333030	44333031	-	0	NA	Intergenic	AluY|SINE|Alu	-19652	NM_021075	4731	Hs.473937	NM_001001503	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	"NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa"	protein-coding
chr5.74349492.-	chr5	74349492	74349493	-	0	NA	Intergenic	CpG	22768	NM_016591	51301	Hs.272404	NM_016591	ENSG00000176928	GCNT4	C2GNT3	"glucosaminyl (N-acetyl) transferase 4, core 2"	protein-coding
chr12.58171549.+	chr12	58171549	58171550	+	0	NA	"intron (NM_206914, intron 3 of 3)"	AluSq2|SINE|Alu	-4979	NM_001172695	10102	Hs.632704	NM_001172695	ENSG00000123297	TSFM	EFTS|EFTSMT	"Ts translation elongation factor, mitochondrial"	protein-coding
chr12.123259459.+	chr12	123259459	123259460	+	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	403	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chr20.54579032.-	chr20	54579032	54579033	-	0	NA	"exon (NM_080617, exon 1 of 3)"	"exon (NM_080617, exon 1 of 3)"	-1496	NM_080617	140689	Hs.741877	NM_080617	ENSG00000054803	CBLN4	CBLNL1	cerebellin 4 precursor	protein-coding
chr17.73890903.-	chr17	73890903	73890904	-	0	NA	"intron (NM_001256124, intron 1 of 4)"	AluY|SINE|Alu	-2181	NM_173547	201292	Hs.189823	NM_001256124	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
chr7.77452603.-	chr7	77452603	77452604	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16844	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr8.101594952.+	chr8	101594952	101594953	+	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	-22938	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chr16.631912.+	chr16	631912	631913	+	0	NA	"intron (NM_148920, intron 9 of 9)"	AluSq2|SINE|Alu	-7445	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr16.82671295.+	chr16	82671295	82671296	+	0	NA	"intron (NM_001220491, intron 1 of 4)"	AluY|SINE|Alu	10896	NM_001220488	1012	Hs.661776	NM_001220488	ENSG00000140945	CDH13	CDHH|P105	"cadherin 13, H-cadherin (heart)"	protein-coding
chr5.176292916.-	chr5	176292916	176292917	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33417	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr14.97183876.+	chr14	97183876	97183877	+	0	NA	Intergenic	AluY|SINE|Alu	-79808	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr17.17398316.-	chr17	17398316	17398317	-	0	NA	"3' UTR (NM_016084, exon 2 of 2)"	"3' UTR (NM_016084, exon 2 of 2)"	-1393	NM_016084	51655	Hs.25829	NM_001199989	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	"RAS, dexamethasone-induced 1"	protein-coding
chr3.48028099.-	chr3	48028099	48028100	-	0	NA	"intron (NM_002375, intron 2 of 18)"	AluSz6|SINE|Alu	-102670	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr8.125092718.+	chr8	125092718	125092719	+	0	NA	"intron (NM_001039112, intron 32 of 40)"	AluSq2|SINE|Alu	-39695	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	miscRNA
chr2.229496729.+	chr2	229496729	229496730	+	0	NA	Intergenic	AluYc|SINE|Alu	-450368	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr2.202092559.-	chr2	202092559	202092560	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5607	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr17.43255886.-	chr17	43255886	43255887	-	0	NA	Intergenic	AluY|SINE|Alu	-17622	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr15.89358722.-	chr15	89358722	89358723	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12048	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr7.2943533.-	chr7	2943533	2943534	-	0	NA	Intergenic	Intergenic	59574	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr6.126111978.+	chr6	126111978	126111979	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	69	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr11.46934401.-	chr11	46934401	46934402	-	0	NA	"intron (NM_002334, intron 1 of 37)"	"intron (NM_002334, intron 1 of 37)"	-5772	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
chr3.42642370.+	chr3	42642370	42642371	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	202	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr17.3109969.-	chr17	3109969	3109970	-	0	NA	Intergenic	AluSc8|SINE|Alu	8946	NM_014565	8383	Hs.532688	NM_014565	ENSG00000172146	OR1A1	OR17-7	"olfactory receptor, family 1, subfamily A, member 1"	protein-coding
chr14.104015144.-	chr14	104015144	104015145	-	0	NA	Intergenic	Intergenic	-13511	NM_001015049	9529	Hs.5443	NM_001015048	ENSG00000166170	BAG5	BAG-5	BCL2-associated athanogene 5	protein-coding
chr10.135270901.-	chr10	135270901	135270902	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3469	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr7.157262178.+	chr7	157262178	157262179	+	0	NA	Intergenic	Intergenic	104936	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr17.7982325.+	chr17	7982325	7982326	+	0	NA	"intron (NM_001139, intron 8 of 14)"	AluY|SINE|Alu	8696	NM_001139	242	Hs.136574	NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	"arachidonate 12-lipoxygenase, 12R type"	protein-coding
chr2.236999664.-	chr2	236999664	236999665	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-76988	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr10.76198257.-	chr10	76198257	76198258	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262010	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr16.84754615.-	chr16	84754615	84754616	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	-21060	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr2.129079917.+	chr2	129079917	129079918	+	0	NA	Intergenic	CpG	-3746	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr6.167600173.-	chr6	167600173	167600174	-	0	NA	Intergenic	Intergenic	-16092	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr9.138959054.+	chr9	138959054	138959055	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28077	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr19.45524646.-	chr19	45524646	45524647	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17652	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr1.16826570.+	chr1	16826570	16826571	+	0	NA	Intergenic	AluSx|SINE|Alu	-7374	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	"ciliary rootlet coiled-coil, rootletin pseudogene 3"	pseudo
chr5.95788570.-	chr5	95788570	95788571	-	0	NA	Intergenic	AluYb8|SINE|Alu	19585	NM_000439	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
chr20.5213451.-	chr20	5213451	5213452	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81564	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chrX.136083582.-	chrX	136083582	136083583	-	0	NA	Intergenic	SVA_D|Other|Other	-30251	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
chr9.244011.+	chr9	244011	244012	+	0	NA	"intron (NM_203447, intron 1 of 47)"	AluY|SINE|Alu	-28118	NM_152569	157983	Hs.190877	NM_152569	ENSG00000183784	C9orf66	RP11-59O6.1	chromosome 9 open reading frame 66	protein-coding
chr17.1953617.+	chr17	1953617	1953618	+	0	NA	promoter-TSS (NR_029674)	promoter-TSS (NR_029674)	57	NR_029625	406994		NR_029625	ENSG00000207953	MIR212	MIRN212|mir-212	microRNA 212	miscRNA
chr21.34914913.+	chr21	34914913	34914914	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	282	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr5.1824216.-	chr5	1824216	1824217	-	0	NA	Intergenic	AluSz6|SINE|Alu	-22720	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr19.3314091.-	chr19	3314091	3314092	-	0	NA	Intergenic	Intergenic	45470	NM_205843	4782	Hs.170131	NM_001245002	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I/C (CCAAT-binding transcription factor)	protein-coding
chr9.6559758.+	chr9	6559758	6559759	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85934	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr6.165953175.+	chr6	165953175	165953176	+	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	122413	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr11.72145203.+	chr11	72145203	72145204	+	0	NA	"exon (NM_030813, exon 1 of 17)"	"exon (NM_030813, exon 1 of 17)"	521	NM_001258393	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr19.4065804.-	chr19	4065804	4065805	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1012	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr1.119792931.-	chr1	119792931	119792932	-	0	NA	Intergenic	Intergenic	109636	NM_015836	10352	Hs.523506	NM_015836	ENSG00000116874	WARS2	TrpRS	"tryptophanyl tRNA synthetase 2, mitochondrial"	protein-coding
chr20.60392343.+	chr20	60392343	60392344	+	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	136375	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr19.4065727.-	chr19	4065727	4065728	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1089	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr21.33279985.+	chr21	33279985	33279986	+	0	NA	"intron (NM_014586, intron 1 of 10)"	L1MB2|LINE|L1	34357	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr9.138437776.+	chr9	138437776	138437777	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-209	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr18.67270925.+	chr18	67270925	67270926	+	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	202641	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr13.111285568.-	chr13	111285568	111285569	-	0	NA	"intron (NR_040103, intron 5 of 9)"	LTR12C|LTR|ERV1	-17637	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr10.134299982.+	chr10	134299982	134299983	+	0	NA	Intergenic	Intergenic	41268	NM_173541	170393	Hs.375059	NM_173541		C10orf91	RP11-432J24.4|bA432J24.4	chromosome 10 open reading frame 91	protein-coding
chr11.2404733.-	chr11	2404733	2404734	-	0	NA	"intron (NM_004356, intron 1 of 7)"	"intron (NM_004356, intron 1 of 7)"	-6186	NM_004356	975	Hs.54457	NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
chr11.4258884.+	chr11	4258884	4258885	+	0	NA	Intergenic	SVA_B|Other|Other	50502	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr10.1510461.+	chr10	1510461	1510462	+	0	NA	"intron (NM_018702, intron 1 of 9)"	"intron (NM_018702, intron 1 of 9)"	-58364	NR_033387	642394	Hs.568831	NR_033387	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	miscRNA
chr13.99373213.-	chr13	99373213	99373214	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31716	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr2.157198795.-	chr2	157198795	157198796	-	0	NA	Intergenic	CpG	9508	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr19.11068060.-	chr19	11068060	11068061	-	0	NA	Intergenic	AluSp|SINE|Alu	3538	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr10.134216439.-	chr10	134216439	134216440	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5737	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr2.138211186.+	chr2	138211186	138211187	+	0	NA	"intron (NM_001080427, intron 14 of 26)"	AluY|SINE|Alu	462724	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	"thrombospondin, type I, domain containing 7B"	protein-coding
chrX.39680387.-	chrX	39680387	39680388	-	0	NA	Intergenic	CpG	-276332	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr11.100999183.+	chr11	100999183	100999184	+	0	NA	promoter-TSS (NR_073144)	promoter-TSS (NR_073144)	611	NM_001202474	5241	Hs.742403	NM_000926	ENSG00000082175	PGR	NR3C3|PR	progesterone receptor	protein-coding
chr5.176314519.+	chr5	176314519	176314520	+	0	NA	"exon (NM_002115, exon 11 of 19)"	"exon (NM_002115, exon 11 of 19)"	11814	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr6.46742397.-	chr6	46742397	46742398	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18697	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr11.17756435.+	chr11	17756435	17756436	+	0	NA	Intergenic	CpG	-1060	NM_001112741	3746	Hs.552896	NM_001112741	ENSG00000129159	KCNC1	KV3.1|KV4|NGK2	"potassium voltage-gated channel, Shaw-related subfamily, member 1"	protein-coding
chr20.32469638.+	chr20	32469638	32469639	+	0	NA	Intergenic	AluJb|SINE|Alu	70528	NM_176812	128866	Hs.472471	NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
chr17.7011313.-	chr17	7011313	7011314	-	0	NA	"intron (NM_001201352, intron 4 of 8)"	"intron (NM_001201352, intron 4 of 8)"	-6316	NM_080914	433	Hs.654440	NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
chr13.111268321.-	chr13	111268321	111268322	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-390	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr5.87348574.-	chr5	87348574	87348575	-	0	NA	Intergenic	L1PA2|LINE|L1	-216091	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr12.121166509.+	chr12	121166509	121166510	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSx|SINE|Alu	2938	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr6.88118015.+	chr6	88118015	88118016	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	325	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr13.20175960.-	chr13	20175960	20175961	-	0	NA	Intergenic	Intergenic	31828	NM_017520	54737	Hs.741282	NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
chr10.126700502.-	chr10	126700502	126700503	-	0	NA	"intron (NM_001083914, intron 3 of 10)"	"intron (NM_001083914, intron 3 of 10)"	-15951	NM_022802	1488	Hs.501345	NM_001083914	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
chr16.632116.-	chr16	632116	632117	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7241	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr2.37551747.+	chr2	37551747	37551748	+	0	NA	Intergenic	CpG	-7525	NM_005813	23683	Hs.716034	NM_005813	ENSG00000115825	PRKD3	EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU	protein kinase D3	protein-coding
chr5.89746543.+	chr5	89746543	89746544	+	0	NA	Intergenic	AluSz|SINE|Alu	24042	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr4.100009930.+	chr4	100009930	100009931	+	0	NA	promoter-TSS (NM_000671)	promoter-TSS (NM_000671)	1	NM_000671	128	Hs.78989	NM_000671	ENSG00000197894	ADH5	ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR	"alcohol dehydrogenase 5 (class III), chi polypeptide"	protein-coding
chr16.78269429.+	chr16	78269429	78269430	+	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	136102	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr7.91257043.+	chr7	91257043	91257044	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252973	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr9.66177400.+	chr9	66177400	66177401	+	0	NA	Intergenic	AluSx|SINE|Alu	-316869	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr14.105134374.-	chr14	105134374	105134375	-	0	NA	Intergenic	AluSz|SINE|Alu	-9712	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr2.169104287.+	chr2	169104287	169104288	+	0	NA	promoter-TSS (NM_013233)	promoter-TSS (NM_013233)	-182	NM_013233	27347	Hs.276271	NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine threonine kinase 39	protein-coding
chr2.171571942.-	chr2	171571942	171571943	-	0	NA	promoter-TSS (NR_027433)	promoter-TSS (NR_027433)	-85	NM_001003845	389058	Hs.368802	NM_001003845	ENSG00000204335	SP5	-	Sp5 transcription factor	protein-coding
chr16.86635817.-	chr16	86635817	86635818	-	0	NA	Intergenic	AluY|SINE|Alu	-23702	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr4.163164001.+	chr4	163164001	163164002	+	0	NA	Intergenic	AluY|SINE|Alu	-78815	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr9.130303116.+	chr9	130303116	130303117	+	0	NA	"intron (NM_001035534, intron 1 of 13)"	"intron (NM_001035534, intron 1 of 13)"	28239	NM_022833	64855	Hs.522401	NM_001035534	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	"family with sequence similarity 129, member B"	protein-coding
chr2.11411922.-	chr2	11411922	11411923	-	0	NA	"intron (NM_004850, intron 3 of 32)"	AluY|SINE|Alu	-72789	NM_004850	9475	Hs.681743	NM_004850		ROCK2	ROCK-II	"Rho-associated, coiled-coil containing protein kinase 2"	protein-coding
chr11.1122326.-	chr11	1122326	1122327	-	0	NA	Intergenic	Intergenic	-47451	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr6.141000373.+	chr6	141000373	141000374	+	0	NA	Intergenic	AluY|SINE|Alu	-4578	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr9.14313212.-	chr9	14313212	14313213	-	0	NA	"intron (NM_001190738, intron 1 of 8)"	CpG	-833	NM_005596	4781	Hs.644095	NM_001190737	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
chr19.17837591.-	chr19	17837591	17837592	-	0	NA	"exon (NM_018174, exon 5 of 7)"	"exon (NM_018174, exon 5 of 7)"	-7288	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chrX.53123323.+	chrX	53123323	53123324	+	0	NA	Intergenic	CpG	11781	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr13.111268315.+	chr13	111268315	111268316	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	384	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr5.68358797.-	chr5	68358797	68358798	-	0	NA	Intergenic	SVA_D|Other|Other	30979	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr1.937260.-	chr1	937260	937261	-	0	NA	Intergenic	CpG-24	1708	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr17.66332166.-	chr17	66332166	66332167	-	0	NA	"intron (NM_001267727, intron 2 of 11)"	AluSx1|SINE|Alu	-44530	NM_001267727	22901	Hs.437249	NM_001267727		ARSG	-	arylsulfatase G	protein-coding
chr8.14882304.-	chr8	14882304	14882305	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171285	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chrX.141491552.+	chrX	141491552	141491553	+	0	NA	Intergenic	AluY|SINE|Alu	-198476	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr8.55038064.+	chr8	55038064	55038065	+	0	NA	Intergenic	SVA_F|Other|Other	-9717	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
chr6.151771578.-	chr6	151771578	151771579	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1738	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr4.81796722.+	chr4	81796722	81796723	+	0	NA	"intron (NM_001206997, intron 5 of 6)"	AluSq2|SINE|Alu	-155397	NM_001201	651	Hs.387411	NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
chr3.122695638.+	chr3	122695638	122695639	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-657	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr7.36403827.-	chr7	36403827	36403828	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2955	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr13.69610515.+	chr13	69610515	69610516	+	0	NA	Intergenic	AluY|SINE|Alu	-151058	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr16.31932492.-	chr16	31932492	31932493	-	0	NA	Intergenic	AluY|SINE|Alu	-47413	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr3.93689439.+	chr3	93689439	93689440	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3495	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr4.177147020.+	chr4	177147020	177147021	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30198	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr3.53529690.+	chr3	53529690	53529691	+	0	NA	"intron (NM_001128840, intron 1 of 47)"	CpG-18602	614	NM_000720	776	Hs.476358	NM_000720	ENSG00000157388	CACNA1D	CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|SANDD	"calcium channel, voltage-dependent, L type, alpha 1D subunit"	protein-coding
chr3.37052299.+	chr3	37052299	37052300	+	0	NA	"intron (NM_001258271, intron 6 of 16)"	AluSx|SINE|Alu	17031	NM_001167618	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	"mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)"	protein-coding
chr2.198058522.+	chr2	198058522	198058523	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	116999	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr18.31802641.+	chr18	31802641	31802642	+	0	NA	promoter-TSS (NM_001198547)	promoter-TSS (NM_001198547)	-207	NR_036752	8715	Hs.514795	NM_001198546	ENSG00000101746	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
chr16.74847254.+	chr16	74847254	74847255	+	0	NA	Intergenic	Intergenic	-38525	NM_024306	79152	Hs.461329	NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
chr10.59080753.+	chr10	59080753	59080754	+	0	NA	Intergenic	AluY|SINE|Alu	-16434	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr10.104238490.-	chr10	104238490	104238491	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17320	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr1.8021823.-	chr1	8021823	8021824	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-109	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr5.21484138.-	chr5	21484138	21484139	-	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	-24549	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr16.4303722.-	chr16	4303722	4303723	-	0	NA	promoter-TSS (NR_039999)	promoter-TSS (NR_039999)	-68	NR_039999	100507501	Hs.632979	NR_039999	ENSG00000262468	LOC100507501	-	uncharacterized LOC100507501	miscRNA
chrX.46794120.-	chrX	46794120	46794121	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22252	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr13.21644943.+	chr13	21644943	21644944	+	0	NA	Intergenic	AluSx|SINE|Alu	-9221	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr2.175314424.-	chr2	175314424	175314425	-	0	NA	"intron (NM_001033045, intron 12 of 16)"	AluSx1|SINE|Alu	-37392	NM_001267050	151556	Hs.741466	NM_001033045	ENSG00000163328	GPR155	DEP.7|DEPDC3|PGR22	G protein-coupled receptor 155	protein-coding
chr15.80987413.-	chr15	80987413	80987414	-	0	NA	promoter-TSS (NM_021214)	promoter-TSS (NM_021214)	239	NM_021214	58489	Hs.459072	NM_021214	ENSG00000136379	ABHD17C	FAM108C1	abhydrolase domain containing 17C	protein-coding
chr22.37641449.-	chr22	37641449	37641450	-	0	NA	Intergenic	Intergenic	1144	NM_002872	5880	Hs.517601	NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022	"ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)"	protein-coding
chr4.166248601.+	chr4	166248601	166248602	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-217	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr22.46522768.+	chr22	46522768	46522769	+	0	NA	Intergenic	Intergenic	13202	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr16.1123314.-	chr16	1123314	1123315	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-558	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr1.10727938.+	chr1	10727938	10727939	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128795	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr5.159429724.+	chr5	159429724	159429725	+	0	NA	Intergenic	AluSz|SINE|Alu	-6456	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr16.31932469.-	chr16	31932469	31932470	-	0	NA	Intergenic	AluY|SINE|Alu	-47390	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr1.101786735.+	chr1	101786735	101786736	+	0	NA	Intergenic	AluY|SINE|Alu	19716	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr11.86934357.+	chr11	86934357	86934358	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	185471	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr19.13497516.-	chr19	13497516	13497517	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119758	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr16.1845099.-	chr16	1845099	1845100	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	190	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr5.178657997.-	chr5	178657997	178657998	-	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	-114434	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr8.54998367.-	chr8	54998367	54998368	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16210	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr10.71044948.-	chr10	71044948	71044949	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15192	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr22.36718693.+	chr22	36718693	36718694	+	0	NA	"intron (NM_002473, intron 5 of 40)"	CpG-17765	65370	NM_002473	4627	Hs.474751	NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	"myosin, heavy chain 9, non-muscle"	protein-coding
chr6.15189314.-	chr6	15189314	15189315	-	0	NA	Intergenic	SVA_F|Other|Other	56892	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr3.36421970.+	chr3	36421970	36421971	+	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	-127	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr2.240371817.-	chr2	240371817	240371818	-	0	NA	Intergenic	SVA_D|Other|Other	49174	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr11.45810312.+	chr11	45810312	45810313	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15311	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr18.63211099.+	chr18	63211099	63211100	+	0	NA	Intergenic	AluY|SINE|Alu	-206389	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr16.68233547.+	chr16	68233547	68233548	+	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	36589	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr17.27126616.-	chr17	27126616	27126617	-	0	NA	"intron (NM_001077498, intron 1 of 2)"	AluSc8|SINE|Alu	-43225	NM_001077498	55731	Hs.564533	NM_001077498	ENSG00000173065	FAM222B	C17orf63	"family with sequence similarity 222, member B"	protein-coding
chr17.45349566.+	chr17	45349566	45349567	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18358	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr19.40781091.-	chr19	40781091	40781092	-	0	NA	"intron (NM_001626, intron 1 of 13)"	"intron (NM_001626, intron 1 of 13)"	-7457	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641	microRNA 641	miscRNA
chr19.42490052.-	chr19	42490052	42490053	-	0	NA	"exon (NM_001256213, exon 6 of 23)"	"exon (NM_001256213, exon 6 of 23)"	-7567	NM_001256213	478	Hs.515427	NM_001256213	ENSG00000105409	ATP1A3	AHC2|DYT12|RDP	"ATPase, Na+/K+ transporting, alpha 3 polypeptide"	protein-coding
chr7.6843790.+	chr7	6843790	6843791	+	0	NA	"intron (NM_198097, intron 12 of 14)"	AluSz|SINE|Alu	22136	NM_198097	221960	Hs.567779	NM_198097		CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
chr16.29422020.-	chr16	29422020	29422021	-	0	NA	Intergenic	AluY|SINE|Alu	38646	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr13.112902973.-	chr13	112902973	112902974	-	0	NA	Intergenic	Intergenic	127678	NM_145248	122258	Hs.97592	NM_145248	ENSG00000153498	SPACA7	C13orf28	sperm acrosome associated 7	protein-coding
chr1.217314043.+	chr1	217314043	217314044	+	0	NA	Intergenic	Intergenic	-2946	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr10.26961199.+	chr10	26961199	26961200	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25396	NM_014317	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1	"prenyl (decaprenyl) diphosphate synthase, subunit 1"	protein-coding
chr17.7246108.+	chr17	7246108	7246109	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6260	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr5.117912688.+	chr5	117912688	117912689	+	0	NA	Intergenic	AluY|SINE|Alu	-397593	NR_036262	100422885		NR_036262		MIR1244-2	-	microRNA 1244-2	miscRNA
chr1.234614271.-	chr1	234614271	234614272	-	0	NA	"exon (NM_005646, exon 1 of 30)"	"exon (NM_005646, exon 1 of 30)"	-578	NM_005646	6894	Hs.498115	NM_005646	ENSG00000059588	TARBP1	TRM3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
chr11.68303182.+	chr11	68303182	68303183	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74996	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chrX.122993626.-	chrX	122993626	122993627	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	36	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr16.89034177.-	chr16	89034177	89034178	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9327	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chrX.42145011.-	chrX	42145011	42145012	-	0	NA	Intergenic	SVA_D|Other|Other	362724	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr22.49785337.-	chr22	49785337	49785338	-	0	NA	Intergenic	Intergenic	-265853	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr18.74225019.-	chr18	74225019	74225020	-	0	NA	Intergenic	AluY|SINE|Alu	15593	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LOC284276	-	uncharacterized LOC284276	miscRNA
chr7.2491237.-	chr7	2491237	2491238	-	0	NA	Intergenic	Intergenic	-48042	NM_018641	55501	Hs.213088	NM_001243794	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate (chondroitin 4) sulfotransferase 12	protein-coding
chr5.176292830.+	chr5	176292830	176292831	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33503	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr6.157734041.+	chr6	157734041	157734042	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11212	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chrX.53111602.+	chrX	53111602	53111603	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	60	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.1798934.-	chr7	1798934	1798935	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50136	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr3.48533712.-	chr3	48533712	48533713	-	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	-7771	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr17.45349579.+	chr17	45349579	45349580	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18371	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr1.44873412.-	chr1	44873412	44873413	-	0	NA	"intron (NM_018150, intron 1 of 14)"	CpG	-2452	NM_018150	55182	Hs.456557	NM_018150	ENSG00000187147	RNF220	C1orf164	ring finger protein 220	protein-coding
chr1.54775674.+	chr1	54775674	54775675	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96305	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chrX.22158732.-	chrX	22158732	22158733	-	0	NA	"intron (NM_000444, intron 12 of 21)"	AluSz6|SINE|Alu	-32368	NR_046639	100873942	Hs.633194	NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	miscRNA
chr9.130292600.+	chr9	130292600	130292601	+	0	NA	"intron (NM_022833, intron 2 of 13)"	"intron (NM_022833, intron 2 of 13)"	38755	NM_022833	64855	Hs.522401	NM_001035534	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	"family with sequence similarity 129, member B"	protein-coding
chrY.8786236.-	chrY	8786236	8786237	-	0	NA	Intergenic	SVA_C|Other|Other	100813	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr3.15431305.-	chr3	15431305	15431306	-	0	NA	Intergenic	AluSp|SINE|Alu	-37737	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr10.76198241.+	chr10	76198241	76198242	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	261994	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr2.173941027.-	chr2	173941027	173941028	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-462	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr11.2213882.-	chr11	2213882	2213883	-	0	NA	Intergenic	Intergenic	-19589	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr10.128174271.-	chr10	128174271	128174272	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35739	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr12.132389099.+	chr12	132389099	132389100	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9820	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr17.18575665.+	chr17	18575665	18575666	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	829	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr11.63533480.+	chr11	63533480	63533481	+	0	NA	"exon (NM_001144936, exon 2 of 5)"	"exon (NM_001144936, exon 2 of 5)"	2633	NM_001144936	65998	Hs.191073	NM_001144936		C11orf95	-	chromosome 11 open reading frame 95	protein-coding
chr4.26589772.-	chr4	26589772	26589773	-	0	NA	"intron (NM_018317, intron 1 of 20)"	AluY|SINE|Alu	-4226	NM_018317	55296	Hs.479403	NM_018317	ENSG00000109680	TBC1D19	-	"TBC1 domain family, member 19"	protein-coding
chr21.46803663.-	chr21	46803663	46803664	-	0	NA	Intergenic	Intergenic	21434	NM_130445	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr2.61307016.+	chr2	61307016	61307017	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13653	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr7.61969280.-	chr7	61969280	61969281	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-795154	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chrX.20694412.+	chrX	20694412	20694413	+	0	NA	Intergenic	AluY|SINE|Alu	-409662	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr11.49199358.-	chr11	49199358	49199359	-	0	NA	"intron (NM_001014986, intron 7 of 17)"	AluSp|SINE|Alu	-30864	NM_001014986	2346	Hs.654487	NM_001014986	ENSG00000086205	FOLH1	FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP	folate hydrolase (prostate-specific membrane antigen) 1	protein-coding
chr12.131551511.-	chr12	131551511	131551512	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98045	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr5.98105824.+	chr5	98105824	98105825	+	0	NA	"non-coding (NR_033932, exon 2 of 2)"	"non-coding (NR_033932, exon 2 of 2)"	825	NM_001012761	285704	Hs.526902	NM_173670	ENSG00000174136	RGMB	DRAGON	"RGM domain family, member B"	protein-coding
chr18.73357790.-	chr18	73357790	73357791	-	0	NA	Intergenic	L2|LINE|L2	218201	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr2.905805.-	chr2	905805	905806	-	0	NA	Intergenic	Intergenic	40749	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr7.1286174.-	chr7	1286174	1286175	-	0	NA	Intergenic	CpG	-13520	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr5.168556295.+	chr5	168556295	168556296	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134403	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chr1.113275298.-	chr1	113275298	113275299	-	0	NA	Intergenic	AluY|SINE|Alu	-12109	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr8.7877741.+	chr8	7877741	7877742	+	0	NA	Intergenic	Intergenic	-22698	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr20.48802900.-	chr20	48802900	48802901	-	0	NA	Intergenic	Intergenic	4220	NM_005194	1051	Hs.720603	NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|CRP2|IL6DBP|LAP|NF-IL6|TCF5	"CCAAT/enhancer binding protein (C/EBP), beta"	protein-coding
chr22.24666552.-	chr22	24666552	24666553	-	0	NA	promoter-TSS (NM_001254732)	promoter-TSS (NM_001254732)	238	NM_015330	23384	Hs.474384	NM_001145468	ENSG00000100014	SPECC1L	CYTSA|OBLFC1	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding
chr15.90792675.+	chr15	90792675	90792676	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-89	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr2.222297741.+	chr2	222297741	222297742	+	0	NA	"intron (NM_004438, intron 14 of 17)"	AluSx3|SINE|Alu	139269	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
chr16.33966272.-	chr16	33966272	33966273	-	0	NA	Intergenic	CpG	3769	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr1.3022456.+	chr1	3022456	3022457	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22083	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr7.66607911.+	chr7	66607911	66607912	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28527	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr2.102559080.-	chr2	102559080	102559081	-	0	NA	Intergenic	AluY|SINE|Alu	49226	NM_004633	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	"interleukin 1 receptor, type II"	protein-coding
chr5.180054329.+	chr5	180054329	180054330	+	0	NA	"intron (NM_002020, intron 8 of 29)"	"intron (NM_002020, intron 8 of 29)"	22295	NM_182925	2324	Hs.646917	NM_002020	ENSG00000037280	FLT4	FLT41|LMPH1A|PCL|VEGFR3	fms-related tyrosine kinase 4	protein-coding
chr18.2377809.-	chr18	2377809	2377810	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193680	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr19.433552.+	chr19	433552	433553	+	0	NA	"intron (NM_012435, intron 8 of 12)"	"intron (NM_012435, intron 8 of 12)"	-24382	NM_001136263	126567	Hs.223770	NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium-dependent domain containing 4C	protein-coding
chr7.155991306.-	chr7	155991306	155991307	-	0	NA	Intergenic	Intergenic	-246976	NR_038232	285889	Hs.407095	NR_038232	ENSG00000233878	LOC285889	-	uncharacterized LOC285889	miscRNA
chr21.33279870.+	chr21	33279870	33279871	+	0	NA	"intron (NM_014586, intron 1 of 10)"	"intron (NM_014586, intron 1 of 10)"	34242	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr13.77954596.-	chr13	77954596	77954597	-	0	NA	Intergenic	AluSc|SINE|Alu	53419	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr5.1770145.+	chr5	1770145	1770146	+	0	NA	Intergenic	L1MB5|LINE|L1	29811	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr7.5334594.-	chr7	5334594	5334595	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12033	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr11.1529325.+	chr11	1529325	1529326	+	0	NA	"intron (NM_053005, intron 2 of 5)"	"intron (NM_053005, intron 2 of 5)"	-21377	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr5.141737533.+	chr5	141737533	141737534	+	0	NA	Intergenic	Intergenic	-32913	NM_030964	81848	Hs.323308	NM_001127496	ENSG00000187678	SPRY4	-	sprouty homolog 4 (Drosophila)	protein-coding
chr6.169849653.+	chr6	169849653	169849654	+	0	NA	Intergenic	Intergenic	-195516	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr6.33811419.-	chr6	33811419	33811420	-	0	NA	Intergenic	Intergenic	39626	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr9.86571471.+	chr9	86571471	86571472	+	0	NA	"5' UTR (NM_032307, exon 1 of 4)"	"5' UTR (NM_032307, exon 1 of 4)"	192	NM_032307	84267	Hs.208914	NM_032307	ENSG00000165118	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
chr7.44073776.+	chr7	44073776	44073777	+	0	NA	"non-coding (NR_024116, exon 6 of 9)"	"non-coding (NR_024116, exon 6 of 9)"	-4872	NR_072981	255031	Hs.661253	NR_024416		FLJ35390	-	uncharacterized LOC255031	miscRNA
chr15.56917211.+	chr15	56917211	56917212	+	0	NA	Intergenic	AluSq2|SINE|Alu	108576	NM_017661	54816	Hs.511477	NM_001002843	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
chr9.111476108.+	chr9	111476108	111476109	+	0	NA	Intergenic	L1PA7|LINE|L1	142167	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr5.176075375.-	chr5	176075375	176075376	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-987	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr17.80728388.+	chr17	80728388	80728389	+	0	NA	"intron (NM_005993, intron 5 of 38)"	AluSp|SINE|Alu	18448	NM_005993	6904	Hs.464391	NM_005993	ENSG00000141556	TBCD	SSD-1|tfcD	tubulin folding cofactor D	protein-coding
chr11.118672125.+	chr11	118672125	118672126	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10153	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr22.43045039.+	chr22	43045039	43045040	+	0	NA	"intron (NM_000398, intron 1 of 8)"	CpG	366	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chr6.42946536.+	chr6	42946536	42946537	+	0	NA	"exon (NM_000287, exon 1 of 17)"	"exon (NM_000287, exon 1 of 17)"	445	NM_000287	5190	Hs.656425	NM_000287	ENSG00000124587	PEX6	PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
chr1.17267885.+	chr1	17267885	17267886	+	0	NA	"intron (NM_014675, intron 13 of 36)"	AluSx|SINE|Alu	19440	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr6.134540781.+	chr6	134540781	134540782	+	0	NA	"intron (NM_001143676, intron 2 of 13)"	AluSp|SINE|Alu	-41771	NM_001143677	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr5.149874622.-	chr5	149874622	149874623	-	0	NA	Intergenic	AluSz|SINE|Alu	13052	NM_001543	3340	Hs.222055	NM_001543	ENSG00000070614	NDST1	HSST|NST1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding
chr20.55204204.-	chr20	55204204	55204205	-	0	NA	promoter-TSS (NM_003222)	promoter-TSS (NM_003222)	154	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr19.34394382.-	chr19	34394382	34394383	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106631	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr1.62231179.-	chr1	62231179	62231180	-	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	-23030	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr1.214610043.+	chr1	214610043	214610044	+	0	NA	"intron (NM_005401, intron 3 of 18)"	AluSx1|SINE|Alu	114981	NM_005401	5784	Hs.193557	NM_005401		PTPN14	PEZ|PTP36	"protein tyrosine phosphatase, non-receptor type 14"	protein-coding
chr5.179167566.+	chr5	179167566	179167567	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	7715	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr8.143373442.+	chr8	143373442	143373443	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93725	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr6.24720950.-	chr6	24720950	24720951	-	0	NA	Intergenic	CpG	1547	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr19.735524.+	chr19	735524	735525	+	0	NA	"intron (NM_002579, intron 6 of 8)"	"intron (NM_002579, intron 6 of 8)"	-15622	NM_173481	126353	Hs.439180	NM_173481	ENSG00000099812	C19orf21	-	chromosome 19 open reading frame 21	protein-coding
chr3.183052329.-	chr3	183052329	183052330	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81297	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr14.77227749.-	chr14	77227749	77227750	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	486	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr6.168204755.+	chr6	168204755	168204756	+	0	NA	Intergenic	Intergenic	-7216	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr2.113642137.-	chr2	113642137	113642138	-	0	NA	Intergenic	AluJb|SINE|Alu	28411	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr20.34266382.+	chr20	34266382	34266383	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13504	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr7.671217.-	chr7	671217	671218	-	0	NA	"intron (NM_002735, intron 4 of 10)"	"intron (NM_002735, intron 4 of 10)"	-80944	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr3.9398166.-	chr3	9398166	9398167	-	0	NA	Intergenic	AluY|SINE|Alu	6551	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr14.90564835.+	chr14	90564835	90564836	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSc8|SINE|Alu	36727	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr15.76627325.-	chr15	76627325	76627326	-	0	NA	Intergenic	AluSg|SINE|Alu	1822	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr2.232202250.+	chr2	232202250	232202251	+	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	-25169	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr18.55790700.+	chr18	55790700	55790701	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25865	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr19.12267308.+	chr19	12267308	12267309	+	0	NA	"intron (NR_037802, intron 1 of 7)"	CpG	238	NR_037801	90589	Hs.732736	NM_145233		ZNF625	-	zinc finger protein 625	protein-coding
chr2.15359874.-	chr2	15359874	15359875	-	0	NA	"intron (NM_015909, intron 47 of 51)"	SVA_E|Other|Other	-341598	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
chr16.53091249.+	chr16	53091249	53091250	+	0	NA	"intron (NM_025134, intron 1 of 38)"	AluJr|SINE|Alu	2304	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chrX.15372370.-	chrX	15372370	15372371	-	0	NA	"intron (NR_037859, intron 12 of 14)"	AluY|SINE|Alu	18694	NR_033836	5277	Hs.137154	NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|PIG-A	"phosphatidylinositol glycan anchor biosynthesis, class A"	protein-coding
chr1.212952998.-	chr1	212952998	212952999	-	0	NA	"intron (NM_001042549, intron 4 of 6)"	SVA_D|Other|Other	-12141	NM_015471	25936	Hs.497692	NM_001042549		NSL1	C1orf48|MIS14	"NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr19.50354813.-	chr19	50354813	50354814	-	0	NA	"intron (NM_017432, intron 1 of 11)"	CpG	-120	NR_040037	100506033	Hs.654814	NR_040037	ENSG00000268006	PTOV1-AS1	-	PTOV1 antisense RNA 1	miscRNA
chr16.1959103.-	chr16	1959103	1959104	-	0	NA	Intergenic	Intergenic	-9128	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr20.5213532.-	chr20	5213532	5213533	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81483	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr9.8857451.+	chr9	8857451	8857452	+	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	-123505	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr20.55965388.+	chr20	55965388	55965389	+	0	NA	"intron (NR_039970, intron 1 of 2)"	"intron (NR_039970, intron 1 of 2)"	-1066	NM_017495	55544	Hs.236361	NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
chr11.100596562.-	chr11	100596562	100596563	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38155	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr11.2011991.+	chr11	2011991	2011992	+	0	NA	promoter-TSS (NR_024471)	promoter-TSS (NR_024471)	-841	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	miscRNA
chr17.4926588.-	chr17	4926588	4926589	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12139	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr13.22147570.+	chr13	22147570	22147571	+	0	NA	"intron (NM_152726, intron 1 of 11)"	AluY|SINE|Alu	30785	NM_152726	221154	Hs.412103	NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
chr14.104339778.-	chr14	104339778	104339779	-	0	NA	Intergenic	AluSz|SINE|Alu	-25720	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr9.10786980.-	chr9	10786980	10786981	-	0	NA	Intergenic	AluYc3|SINE|Alu	174257	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr11.65292816.+	chr11	65292816	65292817	+	0	NA	"intron (NM_020680, intron 1 of 17)"	CpG	268	NM_001048218	57410	Hs.238839	NM_001048218	ENSG00000142186	SCYL1	GKLP|NKTL|NTKL|P105|TAPK|TEIF|TRAP	SCY1-like 1 (S. cerevisiae)	protein-coding
chrX.53369442.+	chrX	53369442	53369443	+	0	NA	Intergenic	AluSx|SINE|Alu	-18920	NM_001111125	23096	Hs.496138	NM_001111125	ENSG00000124313	IQSEC2	BRAG1|MRX1	IQ motif and Sec7 domain 2	protein-coding
chr2.241507727.+	chr2	241507727	241507728	+	0	NA	promoter-TSS (NM_018226)	promoter-TSS (NM_018226)	-277	NM_018226	57140	Hs.5345	NM_018226		RNPEPL1	-	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding
chr9.140182834.-	chr9	140182834	140182835	-	0	NA	Intergenic	SVA_F|Other|Other	-10554	NM_017723	54863	Hs.495541	NM_017723	ENSG00000198113	TOR4A	C9orf167	"torsin family 4, member A"	protein-coding
chr9.80376631.-	chr9	80376631	80376632	-	0	NA	"intron (NM_002072, intron 5 of 6)"	SVA_F|Other|Other	113399	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	"guanine nucleotide binding protein (G protein), alpha 14"	protein-coding
chr4.151501100.-	chr4	151501100	151501101	-	0	NA	"intron (NM_001199282, intron 40 of 56)"	CpG	1977	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	-	mab-21-like 2 (C. elegans)	protein-coding
chr4.39399549.+	chr4	39399549	39399550	+	0	NA	Intergenic	AluSx|SINE|Alu	-8924	NM_175737	152831	Hs.90756	NM_175737	ENSG00000134962	KLB	BKL	klotho beta	protein-coding
chr2.48784515.-	chr2	48784515	48784516	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11644	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr3.126195059.-	chr3	126195059	126195060	-	0	NA	promoter-TSS (NM_025112)	promoter-TSS (NM_025112)	297	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr17.78559349.+	chr17	78559349	78559350	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40724	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr16.723821.+	chr16	723821	723822	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2254	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr9.80898924.-	chr9	80898924	80898925	-	0	NA	Intergenic	LTR12|LTR|ERV1	13135	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr12.107215673.-	chr12	107215673	107215674	-	0	NA	"intron (NM_018157, intron 3 of 8)"	AluY|SINE|Alu	47064	NR_040246	100287944	Hs.742087	NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	miscRNA
chr6.111924230.+	chr6	111924230	111924231	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3247	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr9.90885104.-	chr9	90885104	90885105	-	0	NA	Intergenic	AluJb|SINE|Alu	118193	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chrX.46794155.-	chrX	46794155	46794156	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22287	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr5.170687167.-	chr5	170687167	170687168	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49121	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chrX.9366130.+	chrX	9366130	9366131	+	0	NA	Intergenic	AluY|SINE|Alu	-65205	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr3.42642380.-	chr3	42642380	42642381	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-192	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr19.11043343.-	chr19	11043343	11043344	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3919	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr11.1853632.-	chr11	1853632	1853633	-	0	NA	Intergenic	Intergenic	2042	NM_138567	90019	Hs.161031	NM_138567	ENSG00000149043	SYT8	-	synaptotagmin VIII	protein-coding
chr7.45775927.+	chr7	45775927	45775928	+	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	32690	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr3.196619091.+	chr3	196619091	196619092	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24364	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr6.159416785.-	chr6	159416785	159416786	-	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	-4413	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr20.1317948.-	chr20	1317948	1317949	-	0	NA	"intron (NR_040047, intron 1 of 2)"	MIR|SINE|MIR	8069	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr1.159825804.+	chr1	159825804	159825805	+	0	NA	promoter-TSS (NM_001134233)	promoter-TSS (NM_001134233)	-667	NM_001134233	284677	Hs.647718	NM_001134233	ENSG00000188004	C1orf204	-	chromosome 1 open reading frame 204	protein-coding
chr17.42869163.-	chr17	42869163	42869164	-	0	NA	Intergenic	AluY|SINE|Alu	-32595	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr10.69822250.+	chr10	69822250	69822251	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12853	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr8.29884831.-	chr8	29884831	29884832	-	0	NA	Intergenic	CpG	-55818	NM_016127	51669	Hs.521487	NM_016127	ENSG00000133872	TMEM66	FOAP-7|SARAF|XTP3	transmembrane protein 66	protein-coding
chr14.83280565.+	chr14	83280565	83280566	+	0	NA	Intergenic	SVA_D|Other|Other	-1280360	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr7.13141843.-	chr7	13141843	13141844	-	0	NA	Intergenic	SVA_D|Other|Other	-414932	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr7.26216468.-	chr7	26216468	26216469	-	0	NA	"intron (NM_004289, intron 1 of 3)"	SVA_A|Other|Other	-23945	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
chr6.166331209.+	chr6	166331209	166331210	+	0	NA	Intergenic	Intergenic	-69830	NR_027284	441177	Hs.708964	NM_001013720		LINC00602	-	long intergenic non-protein coding RNA 602	miscRNA
chr9.137588885.-	chr9	137588885	137588886	-	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	-55233	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr11.5780770.+	chr11	5780770	5780771	+	0	NA	Intergenic	AluSx|SINE|Alu	4847	NM_001005175	390072	Hs.553735	NM_001005175	ENSG00000181074	OR52N4	OR11-64	"olfactory receptor, family 52, subfamily N, member 4"	protein-coding
chr10.134034490.-	chr10	134034490	134034491	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34076	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr4.120326279.+	chr4	120326279	120326280	+	0	NA	TTS (NR_037596)	TTS (NR_037596)	5536	NR_037596	401149	Hs.531400	NR_037596		FLJ14186	-	uncharacterized LOC401149	miscRNA
chr17.37768972.-	chr17	37768972	37768973	-	0	NA	Intergenic	Intergenic	4797	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr1.97799201.+	chr1	97799201	97799202	+	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	237722	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr2.220299667.-	chr2	220299667	220299668	-	0	NA	promoter-TSS (NM_005876)	promoter-TSS (NM_005876)	33	NM_005876	10290	Hs.21639	NM_001173476	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|SPEGalpha|SPEGbeta	SPEG complex locus	protein-coding
chr8.1205546.+	chr8	1205546	1205547	+	0	NA	Intergenic	Intergenic	45281	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chrX.129231003.+	chrX	129231003	129231004	+	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	13472	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr12.106606595.-	chr12	106606595	106606596	-	0	NA	Intergenic	L1PA7|LINE|L1	-35118	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr2.128976001.-	chr2	128976001	128976002	-	0	NA	Intergenic	AluSg|SINE|Alu	-100170	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr1.15772167.-	chr1	15772167	15772168	-	0	NA	"exon (NM_007272, exon 7 of 8)"	"exon (NM_007272, exon 7 of 8)"	-7229	NM_007272	11330	Hs.631869	NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C (caldecrin)	protein-coding
chr1.101786800.-	chr1	101786800	101786801	-	0	NA	Intergenic	AluY|SINE|Alu	-19651	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr7.5396264.-	chr7	5396264	5396265	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	-66913	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr11.67351044.+	chr11	67351044	67351045	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-22	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr5.43229304.-	chr5	43229304	43229305	-	0	NA	"intron (NR_072980, intron 1 of 3)"	AluSq2|SINE|Alu	-36350	NR_072980	167359	Hs.25845	NM_153361	ENSG00000177453	NIM1	-	serine/threonine-protein kinase NIM1	protein-coding
chrX.68956251.+	chrX	68956251	68956252	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120340	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr17.46702442.+	chr17	46702442	46702443	+	0	NA	"intron (NM_024017, intron 1 of 1)"	CpG	1393	NM_024017	3219	Hs.463350	NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
chr1.43233208.+	chr1	43233208	43233209	+	0	NA	promoter-TSS (NM_001146289)	promoter-TSS (NM_001146289)	292	NR_040733	79078	Hs.148845	NM_024097	ENSG00000164008	C1orf50	-	chromosome 1 open reading frame 50	protein-coding
chr20.61021241.-	chr20	61021241	61021242	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18612	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr21.45243628.-	chr21	45243628	45243629	-	0	NA	Intergenic	Intergenic	11180	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr16.75112395.+	chr16	75112395	75112396	+	0	NA	"intron (NM_032268, intron 1 of 4)"	AluSx|SINE|Alu	38275	NM_194436	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
chr7.69745559.-	chr7	69745559	69745560	-	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	-681653	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr1.11179386.-	chr1	11179386	11179387	-	0	NA	"intron (NM_004958, intron 49 of 57)"	AluY|SINE|Alu	19448	NM_002685	5394	Hs.632368	NM_001001998	ENSG00000171824	EXOSC10	PM-Scl|PM/Scl-100|PMSCL|PMSCL2|RRP6|Rrp6p|p2|p3|p4	exosome component 10	protein-coding
chr10.59080749.+	chr10	59080749	59080750	+	0	NA	Intergenic	AluY|SINE|Alu	-16430	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr17.67639033.+	chr17	67639033	67639034	+	0	NA	Intergenic	AluY|SINE|Alu	228195	NM_002758	5608	Hs.463978	NM_002758		MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chr17.27717843.+	chr17	27717843	27717844	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-100	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr16.34257056.-	chr16	34257056	34257057	-	0	NA	Intergenic	CpG	-147706	NR_002837	606551	Hs.646441	NR_002837		UBE2MP1	-	ubiquitin-conjugating enzyme E2M pseudogene 1	pseudo
chr7.1542246.+	chr7	1542246	1542247	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1772	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr6.88090604.+	chr6	88090604	88090605	+	0	NA	Intergenic	AluJb|SINE|Alu	-16238	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr4.55034911.-	chr4	55034911	55034912	-	0	NA	Intergenic	AluSx3|SINE|Alu	60353	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr10.6985575.+	chr10	6985575	6985576	+	0	NA	Intergenic	AluSx1|SINE|Alu	164015	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr1.227058413.+	chr1	227058413	227058414	+	0	NA	"intron (NM_000447, intron 1 of 12)"	CpG	140	NM_000447	5664	Hs.25363	NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
chr1.224419917.-	chr1	224419917	224419918	-	0	NA	"intron (NM_001243146, intron 19 of 20)"	AluY|SINE|Alu	-24926	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2	microRNA 320b-2	miscRNA
chr1.54775783.-	chr1	54775783	54775784	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96196	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr13.28369124.+	chr13	28369124	28369125	+	0	NA	Intergenic	Intergenic	2344	NM_145657	219409	Hs.351785	NM_145657		GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
chr9.1070171.+	chr9	1070171	1070172	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	19551	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr15.43662997.-	chr15	43662997	43662998	-	0	NA	promoter-TSS (NM_014444)	promoter-TSS (NM_014444)	316	NM_014444	27229	Hs.584887	NM_014444	ENSG00000137822	TUBGCP4	76P|GCP-4|GCP4|h76p|hGCP4|hGrip76	"tubulin, gamma complex associated protein 4"	protein-coding
chr10.7626427.+	chr10	7626427	7626428	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35209	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr7.127672580.-	chr7	127672580	127672581	-	0	NA	"intron (NM_014390, intron 16 of 23)"	CpG	1578	NM_022143	64101	Hs.655003	NM_022143	ENSG00000128594	LRRC4	NGL-2	leucine rich repeat containing 4	protein-coding
chr12.1044030.+	chr12	1044030	1044031	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14833	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr4.1358124.-	chr4	1358124	1358125	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17020	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr8.23097402.+	chr8	23097402	23097403	+	0	NA	Intergenic	AluY|SINE|Alu	-3748	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr7.2933085.-	chr7	2933085	2933086	-	0	NA	Intergenic	AluSx1|SINE|Alu	49126	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr3.93689441.+	chr3	93689441	93689442	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3493	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr17.11800295.+	chr17	11800295	11800296	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14076	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr6.163113503.-	chr6	163113503	163113504	-	0	NA	"intron (NM_004562, intron 1 of 11)"	MER77|LTR|ERVL	34661	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr11.5315855.+	chr11	5315855	5315856	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7321	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr17.29255161.+	chr17	29255161	29255162	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6407	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr12.8830995.-	chr12	8830995	8830996	-	0	NA	Intergenic	AluSp|SINE|Alu	15562	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr21.45566095.-	chr21	45566095	45566096	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12601	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr8.43274641.-	chr8	43274641	43274642	-	0	NA	Intergenic	SVA_D|Other|Other	-127056	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr19.4612710.-	chr19	4612710	4612711	-	0	NA	Intergenic	AluY|SINE|Alu	26817	NM_152362	126282	Hs.465643	NM_001167942	ENSG00000185361	TNFAIP8L1	TIPE1	"tumor necrosis factor, alpha-induced protein 8-like 1"	protein-coding
chr19.58310311.-	chr19	58310311	58310312	-	0	NA	Intergenic	AluY|SINE|Alu	-15970	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr14.105158934.-	chr14	105158934	105158935	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2991	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chrX.53123328.-	chrX	53123328	53123329	-	0	NA	Intergenic	CpG	-11786	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr17.20946135.-	chr17	20946135	20946136	-	0	NA	"exon (NM_015276, exon 1 of 13)"	"exon (NM_015276, exon 1 of 13)"	-217	NM_015276	23326	Hs.462492	NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
chr11.8896633.-	chr11	8896633	8896634	-	0	NA	"intron (NM_005418, intron 2 of 22)"	AluY|SINE|Alu	-35865	NM_005418	6764	Hs.117715	NM_005418	ENSG00000166444	ST5	DENND2B|HTS1|p126	suppression of tumorigenicity 5	protein-coding
chr15.100514184.+	chr15	100514184	100514185	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-167052	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr8.86574388.+	chr8	86574388	86574389	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	354	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr4.1356976.+	chr4	1356976	1356977	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	15872	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chrX.86721000.-	chrX	86721000	86721001	-	0	NA	Intergenic	SVA_C|Other|Other	51715	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr6.150410246.-	chr6	150410246	150410247	-	0	NA	Intergenic	Intergenic	20044	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr17.74894572.+	chr17	74894572	74894573	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25843	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr17.27766360.+	chr17	27766360	27766361	+	0	NA	"intron (NM_025142, intron 1 of 17)"	AluSx3|SINE|Alu	48417	NM_020791	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr5.33420106.-	chr5	33420106	33420107	-	0	NA	Intergenic	AluY|SINE|Alu	20696	NM_001258437	6897	Hs.481860	NM_001258437	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
chr11.68303170.-	chr11	68303170	68303171	-	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	-74984	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr6.166722175.-	chr6	166722175	166722176	-	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	304	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chrX.68786565.+	chrX	68786565	68786566	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49346	NM_001005610	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr17.1702412.+	chr17	1702412	1702413	+	0	NA	"intron (NM_052928, intron 5 of 10)"	AluYc|SINE|Alu	30763	NM_052928	114826	Hs.514602	NM_052928	ENSG00000186532	SMYD4	ZMYND21	SET and MYND domain containing 4	protein-coding
chr11.16894161.+	chr11	16894161	16894162	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	134013	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr10.17622239.-	chr10	17622239	17622240	-	0	NA	Intergenic	AluY|SINE|Alu	-37134	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr6.64103954.+	chr6	64103954	64103955	+	0	NA	Intergenic	AluSx|SINE|Alu	-74072	NM_001143940	51557	Hs.149585	NM_001143940	ENSG00000146166	LGSN	GLULD1|LGS	"lengsin, lens protein with glutamine synthetase domain"	protein-coding
chr1.110881070.-	chr1	110881070	110881071	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-723	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr9.7934802.-	chr9	7934802	7934803	-	0	NA	Intergenic	AluY|SINE|Alu	135003	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr10.123791072.-	chr10	123791072	123791073	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42383	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr10.48429111.+	chr10	48429111	48429112	+	0	NA	"exon (NM_004962, exon 2 of 3)"	"exon (NM_004962, exon 2 of 3)"	10027	NM_004962	2662	Hs.2171	NM_004962	ENSG00000107623	GDF10	BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
chr6.19215596.+	chr6	19215596	19215597	+	0	NA	Intergenic	AluY|SINE|Alu	-622005	NM_001546	3400	Hs.731649	NM_001546		ID4	IDB4|bHLHb27	"inhibitor of DNA binding 4, dominant negative helix-loop-helix protein"	protein-coding
chr9.12352940.-	chr9	12352940	12352941	-	0	NA	Intergenic	Intergenic	340446	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr19.1725694.-	chr19	1725694	1725695	-	0	NA	Intergenic	CpG	27968	NM_001080488	390874	Hs.654347	NM_001080488		ONECUT3	OC3	one cut homeobox 3	protein-coding
chr20.3879941.+	chr20	3879941	3879942	+	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	9478	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr4.147097169.+	chr4	147097169	147097170	+	0	NA	"intron (NM_007080, intron 1 of 3)"	CpG	334	NM_007080	11157	Hs.190520	NM_007080	ENSG00000164167	LSM6	YDR378C	"LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr17.18575669.+	chr17	18575669	18575670	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	825	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr10.120946121.-	chr10	120946121	120946122	-	0	NA	Intergenic	AluY|SINE|Alu	7776	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr1.156527496.-	chr1	156527496	156527497	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14900	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr9.85547472.+	chr9	85547472	85547473	+	0	NA	Intergenic	AluSx|SINE|Alu	130571	NM_152573	158158	Hs.129136	NM_152573		RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
chr4.1358100.-	chr4	1358100	1358101	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16996	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr18.11959922.+	chr18	11959922	11959923	+	0	NA	Intergenic	SVA_D|Other|Other	-21505	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr10.133016238.-	chr10	133016238	133016239	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93746	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr19.13844038.+	chr19	13844038	13844039	+	0	NA	Intergenic	AluY|SINE|Alu	-14715	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr14.104658556.-	chr14	104658556	104658557	-	0	NA	Intergenic	Intergenic	-53496	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
chr3.8721150.-	chr3	8721150	8721151	-	0	NA	Intergenic	Intergenic	27386	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr19.58609525.-	chr19	58609525	58609526	-	0	NA	"5' UTR (NM_023926, exon 1 of 7)"	"5' UTR (NM_023926, exon 1 of 7)"	-205	NM_001145544	65982	Hs.235390	NM_001145542	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
chr5.171395319.+	chr5	171395319	171395320	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38558	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr4.166248566.+	chr4	166248566	166248567	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-252	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr2.99954207.-	chr2	99954207	99954208	-	0	NA	"intron (NM_015904, intron 1 of 23)"	CpG-15303	-373	NM_015904	9669	Hs.158688	NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
chr11.3241858.+	chr11	3241858	3241859	+	0	NA	"intron (NR_027138, intron 1 of 1)"	"intron (NR_027138, intron 1 of 1)"	-1815	NM_001164377	386746	Hs.730306	NM_001164377	ENSG00000182170	MRGPRG	GPR169|MRGG	"MAS-related GPR, member G"	protein-coding
chr5.179383835.+	chr5	179383835	179383836	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-48979	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr19.12995804.-	chr19	12995804	12995805	-	0	NA	"exon (NM_006563, exon 3 of 3)"	"exon (NM_006563, exon 3 of 3)"	-2213	NM_006563	10661	Hs.37860	NM_006563	ENSG00000105610	KLF1	EKLF|HBFQTL6|INLU	Kruppel-like factor 1 (erythroid)	protein-coding
chr10.43563293.-	chr10	43563293	43563294	-	0	NA	Intergenic	Intergenic	9224	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr11.134026105.+	chr11	134026105	134026106	+	0	NA	"intron (NM_015261, intron 32 of 34)"	"intron (NM_015261, intron 32 of 34)"	68321	NM_015261	23310	Hs.438550	NM_015261	ENSG00000151503	NCAPD3	CAP-D3|hCAP-D3|hHCP-6|hcp-6	"non-SMC condensin II complex, subunit D3"	protein-coding
chr8.60674720.-	chr8	60674720	60674721	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519234	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr9.86597395.-	chr9	86597395	86597396	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1758	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr17.42774529.-	chr17	42774529	42774530	-	0	NA	Intergenic	AluY|SINE|Alu	7364	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chr1.160239891.-	chr1	160239891	160239892	-	0	NA	Intergenic	AluJo|SINE|Alu	7541	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr7.99630215.+	chr7	99630215	99630216	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	16996	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr10.133869127.-	chr10	133869127	133869128	-	0	NA	Intergenic	Intergenic	49186	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr15.50978706.+	chr15	50978706	50978707	+	0	NA	"intron (NM_017672, intron 1 of 38)"	CpG	306	NM_017672	54822	Hs.512894	NM_017672		TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK	"transient receptor potential cation channel, subfamily M, member 7"	protein-coding
chr7.38566160.+	chr7	38566160	38566161	+	0	NA	"intron (NM_139316, intron 2 of 19)"	AluSz6|SINE|Alu	105007	NM_139316	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
chr8.141523693.-	chr8	141523693	141523694	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1612	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr7.75692022.+	chr7	75692022	75692023	+	0	NA	"intron (NM_005918, intron 5 of 8)"	AluJr4|SINE|Alu	14629	NM_005918	4191	Hs.520967	NM_005918		MDH2	M-MDH|MDH|MGC:3559|MOR1	"malate dehydrogenase 2, NAD (mitochondrial)"	protein-coding
chr2.171627721.+	chr2	171627721	171627722	+	0	NA	"non-coding (NR_046247, exon 1 of 5)"	"non-coding (NR_046247, exon 1 of 5)"	117	NR_046248	100505695	Hs.567958	NR_046247	ENSG00000239467	LOC100505695	-	uncharacterized LOC100505695	miscRNA
chr4.55034983.-	chr4	55034983	55034984	-	0	NA	Intergenic	Intergenic	60281	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr2.48776712.-	chr2	48776712	48776713	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	-19404	NM_006873	11037	Hs.736128	NM_001198595	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
chr1.3471157.-	chr1	3471157	3471158	-	0	NA	"intron (NM_001409, intron 4 of 36)"	MLT1D|LTR|ERVL-MaLR	-6197	NR_030277	693135		NR_030277		MIR551A	MIRN551A	microRNA 551a	miscRNA
chr17.20747053.-	chr17	20747053	20747054	-	0	NA	Intergenic	CpG	-52400	NM_001004306	339184	Hs.674830	NM_001004306	ENSG00000205212	CCDC144NL	-	"coiled-coil domain containing 144 family, N-terminal like"	protein-coding
chr7.727492.-	chr7	727492	727493	-	0	NA	"intron (NM_002735, intron 2 of 10)"	AluSx1|SINE|Alu	-24669	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr3.124468930.+	chr3	124468930	124468931	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19717	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chrX.152916356.+	chrX	152916356	152916357	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8459	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr13.88664966.+	chr13	88664966	88664967	+	0	NA	Intergenic	AluSx1|SINE|Alu	340096	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr7.109212788.+	chr7	109212788	109212789	+	0	NA	Intergenic	AluSz|SINE|Alu	387482	NR_003024	442720	Hs.535194	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	"eukaryotic translation initiation factor 3, subunit I pseudogene 1"	pseudo
chr1.79749340.+	chr1	79749340	79749341	+	0	NA	Intergenic	AluSx|SINE|Alu	-276845	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr1.197754728.-	chr1	197754728	197754729	-	0	NA	Intergenic	AluY|SINE|Alu	10105	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr16.632111.-	chr16	632111	632112	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7246	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr1.187335305.+	chr1	187335305	187335306	+	0	NA	Intergenic	AluY|SINE|Alu	537273	NM_024420	5321	Hs.497200	NM_024420	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2-alpha	"phospholipase A2, group IVA (cytosolic, calcium-dependent)"	protein-coding
chr11.69189627.+	chr11	69189627	69189628	+	0	NA	Intergenic	Intergenic	128005	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr2.230579305.-	chr2	230579305	230579306	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	19	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr1.27595470.-	chr1	27595470	27595471	-	0	NA	"intron (NM_015023, intron 3 of 15)"	AluSx|SINE|Alu	-34463	NM_001276252	23038	Hs.469154	NM_001276252	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
chrX.88129152.+	chrX	88129152	88129153	+	0	NA	Intergenic	AluY|SINE|Alu	126926	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr7.74040462.-	chr7	74040462	74040463	-	0	NA	Intergenic	AluSq2|SINE|Alu	31568	NM_001518	2969	Hs.647041	NM_001163636	ENSG00000077809	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
chr9.35690405.+	chr9	35690405	35690406	+	0	NA	promoter-TSS (NM_003289)	promoter-TSS (NM_003289)	-352	NM_003289	7169	Hs.300772	NM_003289	ENSG00000198467	TPM2	AMCD1|DA1|DA2B|NEM4|TMSB	tropomyosin 2 (beta)	protein-coding
chr15.56756057.-	chr15	56756057	56756058	-	0	NA	"intron (NM_018365, intron 2 of 9)"	MIR|SINE|MIR	-1278	NM_018365	55329	Hs.444483	NM_018365	ENSG00000138587	MNS1	SPATA40	meiosis-specific nuclear structural 1	protein-coding
chr13.114929695.-	chr13	114929695	114929696	-	0	NA	Intergenic	Intergenic	31600	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr7.97977803.+	chr7	97977803	97977804	+	0	NA	"intron (NM_018842, intron 3 of 13)"	AluSz6|SINE|Alu	52624	NM_018842	55971	Hs.656063	NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAI1-associated protein 2-like 1	protein-coding
chr17.40440293.-	chr17	40440293	40440294	-	0	NA	"5' UTR (NM_003152, exon 2 of 20)"	"5' UTR (NM_003152, exon 2 of 20)"	-728	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr2.70416470.-	chr2	70416470	70416471	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1681	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr17.3317526.+	chr17	3317526	3317527	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6336	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr1.44400083.-	chr1	44400083	44400084	-	0	NA	"intron (NM_057090, intron 2 of 4)"	"intron (NM_057090, intron 2 of 4)"	-1091	NM_057090	9048	Hs.632404	NM_001136215	ENSG00000117407	ARTN	ENOVIN|EVN|NBN	artemin	protein-coding
chr6.126100296.+	chr6	126100296	126100297	+	0	NA	Intergenic	AluY|SINE|Alu	-2011	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.208031291.-	chr2	208031291	208031292	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-289	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr10.129195996.+	chr10	129195996	129195997	+	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	-151617	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr9.6807796.-	chr9	6807796	6807797	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50155	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chrX.69569665.-	chrX	69569665	69569666	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59786	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr4.185174116.-	chr4	185174116	185174117	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35002	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr8.111697004.-	chr8	111697004	111697005	-	0	NA	Intergenic	AluY|SINE|Alu	710045	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr4.5894461.-	chr4	5894461	5894462	-	0	NA	"exon (NM_001014809, exon 1 of 14)"	"exon (NM_001014809, exon 1 of 14)"	-324	NM_001014809	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr20.2804837.-	chr20	2804837	2804838	-	0	NA	Intergenic	SVA_E|Other|Other	-7861	NM_001167670	100288797	Hs.664180	NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
chr1.171662954.+	chr1	171662954	171662955	+	0	NA	Intergenic	SVA_C|Other|Other	-41181	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr14.34667853.+	chr14	34667853	34667854	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247569	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr17.76206914.+	chr17	76206914	76206915	+	0	NA	Intergenic	AluY|SINE|Alu	-3363	NM_001012271	332	Hs.514527	NM_001012270	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
chr15.101601231.+	chr15	101601231	101601232	+	0	NA	"intron (NM_024652, intron 29 of 33)"	"intron (NM_024652, intron 29 of 33)"	141771	NM_024652	79705	Hs.407918	NM_024652	ENSG00000154237	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
chr19.674640.-	chr19	674640	674641	-	0	NA	Intergenic	Intergenic	1749	NM_005860	10272	Hs.529038	NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin-like 3 (secreted glycoprotein)	protein-coding
chr16.1845128.+	chr16	1845128	1845129	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-219	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr10.70884078.-	chr10	70884078	70884079	-	0	NA	"intron (NM_004896, intron 1 of 8)"	CpG	-170	NM_001035260	9559	Hs.499925	NM_001035260	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	vacuolar protein sorting 26 homolog A (S. pombe)	protein-coding
chr5.17218402.+	chr5	17218402	17218403	+	0	NA	promoter-TSS (NR_027253)	promoter-TSS (NR_027253)	732	NM_006317	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr9.83507.-	chr9	83507	83508	-	0	NA	Intergenic	SVA_E|Other|Other	-34910	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr12.120959519.+	chr12	120959519	120959520	+	0	NA	"intron (NM_032314, intron 2 of 6)"	"intron (NM_032314, intron 2 of 6)"	7445	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr6.12012463.+	chr6	12012463	12012464	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-261	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr5.176075331.-	chr5	176075331	176075332	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-943	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr1.7302922.-	chr1	7302922	7302923	-	0	NA	"intron (NM_015215, intron 4 of 22)"	AluY|SINE|Alu	-457538	NR_038934	23261	Hs.671020	NM_001195563		CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
chr17.7835116.+	chr17	7835116	7835117	+	0	NA	promoter-TSS (NM_001037144)	promoter-TSS (NM_001037144)	151	NM_021210	58485	Hs.24379	NM_001166621	ENSG00000170043	TRAPPC1	BET5|MUM2	trafficking protein particle complex 1	protein-coding
chr6.14976613.+	chr6	14976613	14976614	+	0	NA	Intergenic	LTR2|LTR|ERV1	-269593	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr6.5279375.-	chr6	5279375	5279376	-	0	NA	"intron (NM_006567, intron 1 of 6)"	AluSc8|SINE|Alu	-17791	NM_006567	10667	Hs.484547	NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|dJ520B18.2	"phenylalanyl-tRNA synthetase 2, mitochondrial"	protein-coding
chr11.342913.-	chr11	342913	342914	-	0	NA	Intergenic	AluSz|SINE|Alu	21999	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chrX.109043302.-	chrX	109043302	109043303	-	0	NA	Intergenic	AluY|SINE|Alu	66681	NM_004458	2182	Hs.268785	NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
chr22.30781352.+	chr22	30781352	30781353	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1950	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr1.40052623.+	chr1	40052623	40052624	+	0	NA	Intergenic	AluSq|SINE|Alu	-10102	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chrX.122884645.+	chrX	122884645	122884646	+	0	NA	Intergenic	AluSz|SINE|Alu	-17741	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr21.47403578.-	chr21	47403578	47403579	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1915	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr3.42642371.-	chr3	42642371	42642372	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-201	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr7.128379364.+	chr7	128379364	128379365	+	0	NA	promoter-TSS (NM_001130674)	promoter-TSS (NM_001130674)	18	NM_001219	813	Hs.743262	NM_001130674		CALU	-	calumenin	protein-coding
chr10.135342458.+	chr10	135342458	135342459	+	0	NA	"intron (NM_000773, intron 2 of 8)"	CpG-3597	1591	NM_000773	1571	Hs.12907	NM_000773	ENSG00000130649	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	"cytochrome P450, family 2, subfamily E, polypeptide 1"	protein-coding
chr17.15703045.+	chr17	15703045	15703046	+	0	NA	Intergenic	AluYk4|SINE|Alu	12881	NR_002211	4213	Hs.356135	NR_002211		MEIS3P1	MEIS3|MEIS4|MRG2	Meis homeobox 3 pseudogene 1	pseudo
chr2.68031689.+	chr2	68031689	68031690	+	0	NA	Intergenic	AluY|SINE|Alu	258470	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr18.33543846.+	chr18	33543846	33543847	+	0	NA	Intergenic	AluY|SINE|Alu	-8742	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr2.242500467.-	chr2	242500467	242500468	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1909	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr2.240868550.+	chr2	240868550	240868551	+	0	NA	Intergenic	CpG	13961	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	-	microRNA 4786	miscRNA
chr9.132975013.+	chr9	132975013	132975014	+	0	NA	"intron (NM_014286, intron 2 of 7)"	"intron (NM_014286, intron 2 of 7)"	12141	NM_001128826	23413	Hs.642946	NM_001128826	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
chr12.107112610.+	chr12	107112610	107112611	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34132	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr22.32000940.-	chr22	32000940	32000941	-	0	NA	"intron (NM_001258326, intron 18 of 30)"	"intron (NM_001258326, intron 18 of 30)"	-25870	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
chr5.54522506.-	chr5	54522506	54522507	-	0	NA	"intron (NM_001190787, intron 2 of 6)"	CpG-20700	-637	NM_001190787	345643	Hs.394578	NM_001190787	ENSG00000234602	MCIDAS	IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
chr20.33283484.-	chr20	33283484	33283485	-	0	NA	Intergenic	AluY|SINE|Alu	8664	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr1.227857332.+	chr1	227857332	227857333	+	0	NA	"intron (NR_102302, intron 5 of 5)"	AluY|SINE|Alu	28076	NR_036753	401983	Hs.681816	NR_036753		ZNF847P	gm127	"zinc finger protein 847, pseudogene"	pseudo
chr2.91671075.+	chr2	91671075	91671076	+	0	NA	Intergenic	CpG	176900	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chrX.70493581.-	chrX	70493581	70493582	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9461	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr7.155246287.-	chr7	155246287	155246288	-	0	NA	Intergenic	Intergenic	4537	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr1.217697507.+	chr1	217697507	217697508	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106902	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr1.21059120.+	chr1	21059120	21059121	+	0	NA	promoter-TSS (NM_001103160)	promoter-TSS (NM_001103160)	13	NM_001103161	400745	Hs.591522	NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
chr2.10127187.+	chr2	10127187	10127188	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSz6|SINE|Alu	35395	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr2.137180644.-	chr2	137180644	137180645	-	0	NA	Intergenic	AluSq2|SINE|Alu	304919	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr17.65843614.-	chr17	65843614	65843615	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21834	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr5.17207792.+	chr5	17207792	17207793	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9140	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr2.121244107.+	chr2	121244107	121244108	+	0	NA	Intergenic	Intergenic	-20182	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr19.3644514.+	chr19	3644514	3644515	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17701	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr9.131293116.-	chr9	131293116	131293117	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21721	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr12.12618758.+	chr12	12618758	12618759	+	0	NA	"3' UTR (NM_058169, exon 4 of 4)"	"3' UTR (NM_058169, exon 4 of 4)"	96690	NM_030640	80824	Hs.536535	NM_030640		DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
chr7.27252855.+	chr7	27252855	27252856	+	0	NA	Intergenic	CpG	12815	NR_037843	100316868	Hs.199486	NR_037843	ENSG00000243766	HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	miscRNA
chr15.31063079.+	chr15	31063079	31063080	+	0	NA	"non-coding (NR_038254, exon 5 of 5)"	"non-coding (NR_038254, exon 5 of 5)"	-47160	NR_072991	390561	Hs.721293	NR_072991		HERC2P10	-	hect domain and RLD 2 pseudogene 10	pseudo
chr11.120382883.-	chr11	120382883	120382884	-	0	NA	Intergenic	CpG	148145	NM_014619	2900	Hs.568901	NM_014619		GRIK4	EAA1|GRIK|GluK4|KA1	"glutamate receptor, ionotropic, kainate 4"	protein-coding
chr19.4058767.-	chr19	4058767	4058768	-	0	NA	"intron (NM_015898, intron 1 of 2)"	"intron (NM_015898, intron 1 of 2)"	-8049	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr12.111714702.-	chr12	111714702	111714703	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92223	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr5.138900596.+	chr5	138900596	138900597	+	0	NA	Intergenic	AluY|SINE|Alu	-38253	NM_198282	340061	Hs.379754	NM_198282		TMEM173	ERIS|MITA|MPYS|NET23|STING	transmembrane protein 173	protein-coding
chr2.10424804.+	chr2	10424804	10424805	+	0	NA	Intergenic	Intergenic	-18226	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr17.48631020.-	chr17	48631020	48631021	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6570	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr5.178157367.+	chr5	178157367	178157368	+	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	336	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chrX.144902930.-	chrX	144902930	144902931	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-64	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr7.5355984.+	chr7	5355984	5355985	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33423	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr3.46792429.+	chr3	46792429	46792430	+	0	NA	Intergenic	CpG	-6184	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr2.204121201.+	chr2	204121201	204121202	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18037	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr5.78890147.+	chr5	78890147	78890148	+	0	NA	Intergenic	AluY|SINE|Alu	-18096	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr3.48533711.+	chr3	48533711	48533712	+	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	7772	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr2.136403774.-	chr2	136403774	136403775	-	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	19193	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr14.103236979.-	chr14	103236979	103236980	-	0	NA	Intergenic	L2c|LINE|L2	6837	NM_001199427	7187	Hs.510528	NM_001199427	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor-associated factor 3	protein-coding
chr7.5257638.+	chr7	5257638	5257639	+	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	3738	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr13.31023977.+	chr13	31023977	31023978	+	0	NA	Intergenic	AluSq2|SINE|Alu	16104	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr8.43413761.-	chr8	43413761	43413762	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266176	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr5.175665275.+	chr5	175665275	175665276	+	0	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	-95	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr12.127944427.-	chr12	127944427	127944428	-	0	NA	Intergenic	Intergenic	421735	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr16.89269028.+	chr16	89269028	89269029	+	0	NA	Intergenic	L1MB5|LINE|L1	-2499	NM_001242757	146429	Hs.743726	NM_001242757		SLC22A31	-	"solute carrier family 22, member 31"	protein-coding
chr16.46387518.-	chr16	46387518	46387519	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215491	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr22.30750813.+	chr22	30750813	30750814	+	0	NA	"intron (NM_005877, intron 1 of 15)"	AluJo|SINE|Alu	-1814	NM_001017437	550631	Hs.505597	NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
chr8.1390519.+	chr8	1390519	1390520	+	0	NA	Intergenic	Intergenic	-59013	NM_001277161	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr2.235844068.+	chr2	235844068	235844069	+	0	NA	Intergenic	Intergenic	-16560	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr15.37172785.-	chr15	37172785	37172786	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5949	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr2.239047559.-	chr2	239047559	239047560	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-196	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr5.1815630.+	chr5	1815630	1815631	+	0	NA	"intron (NM_004553, intron 3 of 3)"	"intron (NM_004553, intron 3 of 3)"	14134	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr17.8892466.-	chr17	8892466	8892467	-	0	NA	Intergenic	AluSp|SINE|Alu	23437	NM_001142633	23533	Hs.738684	NM_001142633	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	"phosphoinositide-3-kinase, regulatory subunit 5"	protein-coding
chr16.544885.+	chr16	544885	544886	+	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	20035	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr19.2931351.+	chr19	2931351	2931352	+	0	NA	Intergenic	AluY|SINE|Alu	13618	NM_021217	58492	Hs.38004	NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
chr13.69911408.+	chr13	69911408	69911409	+	0	NA	Intergenic	AluY|SINE|Alu	-451951	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr7.156795101.+	chr7	156795101	156795102	+	0	NA	Intergenic	Intergenic	7028	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr12.51681495.-	chr12	51681495	51681496	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17293	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr9.11197049.-	chr9	11197049	11197050	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584326	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr16.3229155.-	chr16	3229155	3229156	-	0	NA	Intergenic	Intergenic	25092	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr16.53448440.+	chr16	53448440	53448441	+	0	NA	Intergenic	AluSp|SINE|Alu	-19911	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr4.3270622.-	chr4	3270622	3270623	-	0	NA	Intergenic	Intergenic	-19855	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
chr7.2544951.-	chr7	2544951	2544952	-	0	NA	Intergenic	Intergenic	7212	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr17.30863338.+	chr17	30863338	30863339	+	0	NA	"intron (NM_015194, intron 21 of 21)"	AluSz|SINE|Alu	49233	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	"cyclin-dependent kinase 5, regulatory subunit 1 (p35)"	protein-coding
chr6.46742415.+	chr6	46742415	46742416	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18679	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chrM.131.-	chrM	131	132	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.25142808.+	chr2	25142808	25142809	+	0	NA	promoter-TSS (NM_004036)	promoter-TSS (NM_004036)	-753	NM_004036	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC3	adenylate cyclase 3	protein-coding
chr8.146024430.+	chr8	146024430	146024431	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	169	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chrX.19461221.+	chrX	19461221	19461222	+	0	NA	"intron (NM_001001671, intron 6 of 28)"	AluSz|SINE|Alu	72158	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr8.120565226.+	chr8	120565226	120565227	+	0	NA	Intergenic	AluSc8|SINE|Alu	40022	NR_045555	5168	Hs.190977	NM_001040092	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
chr8.6812583.+	chr8	6812583	6812584	+	0	NA	Intergenic	AluSp|SINE|Alu	-3462	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr20.50261093.+	chr20	50261093	50261094	+	0	NA	"intron (NM_006045, intron 14 of 27)"	AluY|SINE|Alu	-81723	NM_001258294	4773	Hs.744148	NM_001136021	ENSG00000101096	NFATC2	NFAT1|NFATP	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2"	protein-coding
chr20.10376073.-	chr20	10376073	10376074	-	0	NA	Intergenic	SVA_C|Other|Other	-36500	NM_018848	8195	Hs.741430	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
chr7.150812725.-	chr7	150812725	150812726	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28899	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr3.80581471.+	chr3	80581471	80581472	+	0	NA	Intergenic	AluSg|SINE|Alu	-764412	NM_002941	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr13.50222209.-	chr13	50222209	50222210	-	0	NA	Intergenic	AluY|SINE|Alu	-19774	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr6.7878866.+	chr6	7878866	7878867	+	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	31444	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr19.9311211.-	chr19	9311211	9311212	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14336	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr12.120959403.+	chr12	120959403	120959404	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7561	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr15.22095255.+	chr15	22095255	22095256	+	0	NA	Intergenic	CpG	-12118	NM_207355	339010	Hs.742365	XM_003403539		POTEB	A26B1|CT104.5|POTE-15|POTE15	"POTE ankyrin domain family, member B"	protein-coding
chr7.2943519.+	chr7	2943519	2943520	+	0	NA	Intergenic	Intergenic	-59560	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr1.8837733.+	chr1	8837733	8837734	+	0	NA	"intron (NM_001042681, intron 1 of 22)"	AluY|SINE|Alu	39966	NM_012102	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr17.65335479.+	chr17	65335479	65335480	+	0	NA	Intergenic	AluSx|SINE|Alu	27242	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr16.30194645.+	chr16	30194645	30194646	+	0	NA	promoter-TSS (NM_007074)	promoter-TSS (NM_007074)	-86	NM_001193333	11151	Hs.415067	NM_001193333	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|TACO|p57	"coronin, actin binding protein, 1A"	protein-coding
chr2.105760712.-	chr2	105760712	105760713	-	0	NA	Intergenic	CpG	97488	NM_007227	11250	Hs.590903	NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
chr5.141558683.+	chr5	141558683	141558684	+	0	NA	Intergenic	AluSg|SINE|Alu	70359	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr16.89788408.+	chr16	89788408	89788409	+	0	NA	"intron (NM_001113525, intron 1 of 10)"	CpG	456	NM_001113525	92822	Hs.290154	NM_001113525	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZFP276|ZNF477	zinc finger protein 276	protein-coding
chr12.106533418.-	chr12	106533418	106533419	-	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	-393	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr22.50655087.+	chr22	50655087	50655088	+	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	15679	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr7.157234981.-	chr7	157234981	157234982	-	0	NA	Intergenic	CpG	-105270	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr20.58244267.+	chr20	58244267	58244268	+	0	NA	"intron (NM_080672, intron 1 of 12)"	"intron (NM_080672, intron 1 of 12)"	-7449	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr21.31598702.+	chr21	31598702	31598703	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10233	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr12.122667623.-	chr12	122667623	122667624	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	44	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chrX.153095460.-	chrX	153095460	153095461	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-543	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr22.38531078.+	chr22	38531078	38531079	+	0	NA	"exon (NM_001199562, exon 6 of 16)"	"exon (NM_001199562, exon 6 of 16)"	-24402	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr3.29051410.-	chr3	29051410	29051411	-	0	NA	Intergenic	AluSc8|SINE|Alu	271393	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr7.158268153.+	chr7	158268153	158268154	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57352	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr10.15761876.+	chr10	15761876	15761877	+	0	NA	promoter-TSS (NM_003638)	promoter-TSS (NM_003638)	-106	NM_003638	8516	Hs.171311	NM_003638		ITGA8	-	"integrin, alpha 8"	protein-coding
chrM.2943.+	chrM	2943	2944	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr14.73712796.-	chr14	73712796	73712797	-	0	NA	"exon (NM_173462, exon 5 of 26)"	"exon (NM_173462, exon 5 of 26)"	-8591	NM_173462	89932	Hs.509909	NM_173462	ENSG00000100767	PAPLN	-	"papilin, proteoglycan-like sulfated glycoprotein"	protein-coding
chr7.21370301.-	chr7	21370301	21370302	-	0	NA	Intergenic	MER52D|LTR|ERV1	97388	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr2.947090.+	chr2	947090	947091	+	0	NA	"intron (NM_018968, intron 1 of 16)"	CpG	536	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr1.178011446.+	chr1	178011446	178011447	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4304	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr17.8252957.-	chr17	8252957	8252958	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9769	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr4.55015818.+	chr4	55015818	55015819	+	0	NA	Intergenic	LTR12C|LTR|ERV1	49570	NM_133267	170825	Hs.371899	NM_133267		GSX2	GSH2	GS homeobox 2	protein-coding
chr17.79609397.+	chr17	79609397	79609398	+	0	NA	promoter-TSS (NM_031945)	promoter-TSS (NM_031945)	48	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr1.97799059.+	chr1	97799059	97799060	+	0	NA	"intron (NM_000110, intron 16 of 22)"	"intron (NM_000110, intron 16 of 22)"	237580	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr7.32427447.-	chr7	32427447	32427448	-	0	NA	Intergenic	SVA_E|Other|Other	-70659	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
chr11.86934336.-	chr11	86934336	86934337	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-185450	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr4.1723548.-	chr4	1723548	1723549	-	0	NA	promoter-TSS (NM_001127266)	promoter-TSS (NM_001127266)	-331	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr12.94945452.+	chr12	94945452	94945453	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10113	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr7.36403841.+	chr7	36403841	36403842	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	2941	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr14.101679062.-	chr14	101679062	101679063	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142814	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr2.148597931.+	chr2	148597931	148597932	+	0	NA	Intergenic	AluJb|SINE|Alu	-4639	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	"activin A receptor, type IIA"	protein-coding
chr11.133788127.+	chr11	133788127	133788128	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16492	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr10.134034493.-	chr10	134034493	134034494	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34079	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr17.38400057.+	chr17	38400057	38400058	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24483	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr1.10727924.+	chr1	10727924	10727925	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128809	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr13.68791146.-	chr13	68791146	68791147	-	0	NA	Intergenic	AluY|SINE|Alu	-668311	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr9.90472388.-	chr9	90472388	90472389	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1583	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chr1.101786806.-	chr1	101786806	101786807	-	0	NA	Intergenic	AluY|SINE|Alu	-19645	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr6.169648553.-	chr6	169648553	169648554	-	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	-5584	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr19.2492341.+	chr19	2492341	2492342	+	0	NA	Intergenic	AluSz|SINE|Alu	16218	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr4.5892149.-	chr4	5892149	5892150	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1834	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr21.45684278.-	chr21	45684278	45684279	-	0	NA	Intergenic	AluY|SINE|Alu	2179	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr16.49868651.-	chr16	49868651	49868652	-	0	NA	"intron (NM_001271620, intron 1 of 7)"	"intron (NM_001271620, intron 1 of 7)"	12002	NM_015069	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr20.42136334.-	chr20	42136334	42136335	-	0	NA	promoter-TSS (NM_032107)	promoter-TSS (NM_032107)	-14	NM_032107	26013	Hs.736988	NM_015478	ENSG00000185513	L3MBTL1	H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3	l(3)mbt-like 1 (Drosophila)	protein-coding
chr19.56900190.+	chr19	56900190	56900191	+	0	NA	"intron (NM_144690, intron 4 of 4)"	AluSz|SINE|Alu	4699	NM_144690	147948	Hs.244391	NM_144690	ENSG00000018869	ZNF582	-	zinc finger protein 582	protein-coding
chr13.114452012.-	chr13	114452012	114452013	-	0	NA	"non-coding (NR_028064, exon 1 of 1)"	"non-coding (NR_028064, exon 1 of 1)"	-2050	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr11.64120586.-	chr11	64120586	64120587	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6039	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr20.23973646.-	chr20	23973646	23973647	-	0	NA	Intergenic	AluJr|SINE|Alu	4230	NM_178311	92086	Hs.355394	NM_178311	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
chr11.113665982.+	chr11	113665982	113665983	+	0	NA	Intergenic	AluSx|SINE|Alu	15464	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr7.20445230.+	chr7	20445230	20445231	+	0	NA	"intron (NM_002214, intron 11 of 13)"	AluY|SINE|Alu	74505	NM_002214	3696	Hs.592171	NM_002214		ITGB8	-	"integrin, beta 8"	protein-coding
chr3.134203041.-	chr3	134203041	134203042	-	0	NA	"intron (NM_015391, intron 1 of 2)"	AluY|SINE|Alu	1534	NM_001042384	80254	Hs.443301	NM_001042383	ENSG00000182923	CEP63	-	centrosomal protein 63kDa	protein-coding
chr4.177147030.+	chr4	177147030	177147031	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30208	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr11.41260593.+	chr11	41260593	41260594	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220593	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr9.35728473.-	chr9	35728473	35728474	-	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	3844	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr5.675432.-	chr5	675432	675433	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18078	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr7.1798903.+	chr7	1798903	1798904	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50105	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr16.68028279.+	chr16	68028279	68028280	+	0	NA	"intron (NM_022355, intron 1 of 10)"	"intron (NM_022355, intron 1 of 10)"	5142	NM_022355	64174	Hs.372633	NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
chr16.33955847.+	chr16	33955847	33955848	+	0	NA	Intergenic	MER39B|LTR|ERV1	6656	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr20.18441243.+	chr20	18441243	18441244	+	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	6586	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr2.234263687.+	chr2	234263687	234263688	+	0	NA	"intron (NM_152879, intron 1 of 29)"	"intron (NM_152879, intron 1 of 29)"	534	NM_152879	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	"diacylglycerol kinase, delta 130kDa"	protein-coding
chr17.37144917.+	chr17	37144917	37144918	+	0	NA	Intergenic	AluSq|SINE|Alu	-21262	NM_001008777	494188	Hs.549536	NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
chr13.68791019.-	chr13	68791019	68791020	-	0	NA	Intergenic	AluY|SINE|Alu	-668438	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr3.195498046.-	chr3	195498046	195498047	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40798	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr20.20772518.+	chr20	20772518	20772519	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79252	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr8.142651301.+	chr8	142651301	142651302	+	0	NA	Intergenic	Intergenic	-133971	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr15.41687819.-	chr15	41687819	41687820	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6839	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr14.87514424.+	chr14	87514424	87514425	+	0	NA	Intergenic	AluY|SINE|Alu	142302	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LOC283585	-	uncharacterized LOC283585	miscRNA
chr1.150897077.+	chr1	150897077	150897078	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1738	NM_012432	9869	Hs.643565	NM_001145415	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	"SET domain, bifurcated 1"	protein-coding
chr10.59351292.+	chr10	59351292	59351293	+	0	NA	Intergenic	AluY|SINE|Alu	-286973	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr2.202045963.-	chr2	202045963	202045964	-	0	NA	Intergenic	Intergenic	1658	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr1.226350690.-	chr1	226350690	226350691	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23733	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr14.104838049.+	chr14	104838049	104838050	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-208007	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chr2.48776709.-	chr2	48776709	48776710	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	-19401	NM_006873	11037	Hs.736128	NM_001198595	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
chr1.79749324.+	chr1	79749324	79749325	+	0	NA	Intergenic	AluSx|SINE|Alu	-276829	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr2.70416476.-	chr2	70416476	70416477	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1675	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr1.79749331.+	chr1	79749331	79749332	+	0	NA	Intergenic	AluSx|SINE|Alu	-276836	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr2.241500540.-	chr2	241500540	241500541	-	0	NA	"intron (NM_001033575, intron 1 of 2)"	CpG	-1069	NM_001033575	285193	Hs.369297	NM_001033575	ENSG00000188542	DUSP28	DUSP26|VHP	dual specificity phosphatase 28	protein-coding
chr14.103988593.+	chr14	103988593	103988594	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	603	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr7.1286205.+	chr7	1286205	1286206	+	0	NA	Intergenic	CpG	13551	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr5.122861607.+	chr5	122861607	122861608	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13814	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr17.27019336.+	chr17	27019336	27019337	+	0	NA	"intron (NM_003170, intron 27 of 36)"	AluY|SINE|Alu	19536	NM_152465	147011	Hs.207471	NM_152465		PROCA1	-	protein interacting with cyclin A1	protein-coding
chr11.45810306.+	chr11	45810306	45810307	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15317	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr18.41408419.-	chr18	41408419	41408420	-	0	NA	Intergenic	AluSx3|SINE|Alu	550804	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr16.28435296.+	chr16	28435296	28435297	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2479	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr9.88491226.-	chr9	88491226	88491227	-	0	NA	Intergenic	AluYc|SINE|Alu	64831	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr19.33776874.-	chr19	33776874	33776875	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16556	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr7.1499291.-	chr7	1499291	1499292	-	0	NA	promoter-TSS (NM_182924)	promoter-TSS (NM_182924)	182	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr14.35334246.-	chr14	35334246	35334247	-	0	NA	"intron (NM_013448, intron 2 of 26)"	AluSc8|SINE|Alu	-10607	NM_182648	11177	Hs.509140	NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	"bromodomain adjacent to zinc finger domain, 1A"	protein-coding
chr9.133430104.+	chr9	133430104	133430105	+	0	NA	Intergenic	Intergenic	24777	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr2.113965318.+	chr2	113965318	113965319	+	0	NA	Intergenic	AluY|SINE|Alu	-27786	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chrX.113575432.+	chrX	113575432	113575433	+	0	NA	Intergenic	AluJb|SINE|Alu	-243119	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr8.27695143.+	chr8	27695143	27695144	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	206	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr3.48117718.+	chr3	48117718	48117719	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13051	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chrX.19461223.+	chrX	19461223	19461224	+	0	NA	"intron (NM_001001671, intron 6 of 28)"	AluSz|SINE|Alu	72156	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr2.100253357.+	chr2	100253357	100253358	+	0	NA	"intron (NM_002285, intron 12 of 23)"	"intron (NM_002285, intron 12 of 23)"	-146877	NM_001037872	51455	Hs.443077	NM_001037872	ENSG00000135945	REV1	REV1L	"REV1, polymerase (DNA directed)"	protein-coding
chr10.3167268.+	chr10	3167268	3167269	+	0	NA	"intron (NM_001242339, intron 18 of 23)"	"intron (NM_001242339, intron 18 of 23)"	-16525	NR_038284	100507034	Hs.665365	NR_038284	ENSG00000237399	PITRM1-AS1	-	PITRM1 antisense RNA 1	miscRNA
chr3.82554741.+	chr3	82554741	82554742	+	0	NA	Intergenic	MER52A|LTR|ERV1	-743791	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr11.66460973.-	chr11	66460973	66460974	-	0	NA	"intron (NM_006946, intron 22 of 36)"	"intron (NM_006946, intron 22 of 36)"	15698	NM_031492	83759	Hs.618713	NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
chr22.43238141.-	chr22	43238141	43238142	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15267	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr17.25676743.-	chr17	25676743	25676744	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55637	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr13.35281555.+	chr13	35281555	35281556	+	0	NA	Intergenic	AluY|SINE|Alu	-66733	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr11.86934359.+	chr11	86934359	86934360	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	185473	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr2.235844049.+	chr2	235844049	235844050	+	0	NA	Intergenic	AluSc|SINE|Alu	-16579	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr1.233265045.+	chr1	233265045	233265046	+	0	NA	"intron (NM_014801, intron 21 of 33)"	LTR12C|LTR|ERV1	166414	NM_014801	80003	Hs.370605	NM_014801	ENSG00000135749	PCNXL2	-	pecanex-like 2 (Drosophila)	protein-coding
chr16.86635850.-	chr16	86635850	86635851	-	0	NA	Intergenic	AluY|SINE|Alu	-23735	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr9.12352932.+	chr9	12352932	12352933	+	0	NA	Intergenic	Intergenic	-340454	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr7.139162639.+	chr7	139162639	139162640	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5818	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr11.133763875.-	chr11	133763875	133763876	-	0	NA	Intergenic	AluY|SINE|Alu	-4601	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr14.44126277.-	chr14	44126277	44126278	-	0	NA	Intergenic	AluSc|SINE|Alu	-850222	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chrX.13062313.+	chrX	13062313	13062314	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	604	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr17.76799755.-	chr17	76799755	76799756	-	0	NA	"exon (NM_025090, exon 16 of 20)"	"exon (NM_025090, exon 16 of 20)"	21379	NM_004762	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
chr2.113642021.-	chr2	113642021	113642022	-	0	NA	Intergenic	AluJb|SINE|Alu	28527	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr7.13901794.-	chr7	13901794	13901795	-	0	NA	Intergenic	AluY|SINE|Alu	-124345	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr17.74920430.+	chr17	74920430	74920431	+	0	NA	"intron (NM_001199172, intron 8 of 16)"	"intron (NM_001199172, intron 8 of 16)"	51701	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr2.11411912.-	chr2	11411912	11411913	-	0	NA	"intron (NM_004850, intron 3 of 32)"	AluY|SINE|Alu	-72799	NM_004850	9475	Hs.681743	NM_004850		ROCK2	ROCK-II	"Rho-associated, coiled-coil containing protein kinase 2"	protein-coding
chr3.46792417.+	chr3	46792417	46792418	+	0	NA	Intergenic	CpG	-6172	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr11.3224482.+	chr11	3224482	3224483	+	0	NA	Intergenic	Intergenic	-15080	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr11.74107025.-	chr11	74107025	74107026	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2477	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr4.43848200.+	chr4	43848200	43848201	+	0	NA	Intergenic	LTR12C|LTR|ERV1	602624	NM_198353	386617	Hs.479644	NM_198353	ENSG00000183783	KCTD8	-	potassium channel tetramerisation domain containing 8	protein-coding
chr19.11060480.+	chr19	11060480	11060481	+	0	NA	Intergenic	AluY|SINE|Alu	-11118	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr1.32679271.-	chr1	32679271	32679272	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4576	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr6.33500261.+	chr6	33500261	33500262	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47809	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr3.186153540.-	chr3	186153540	186153541	-	0	NA	Intergenic	SVA_B|Other|Other	-57910	NR_033844	253573	Hs.97386	NR_033844	ENSG00000224406	LOC253573	-	uncharacterized LOC253573	miscRNA
chr10.121204365.+	chr10	121204365	121204366	+	0	NA	"intron (NM_005308, intron 12 of 15)"	"intron (NM_005308, intron 12 of 15)"	66881	NR_039829	100616398		NR_039829		MIR4681	-	microRNA 4681	miscRNA
chr6.75914802.-	chr6	75914802	75914803	-	0	NA	"intron (NM_080645, intron 1 of 50)"	CpG	-821	NM_080645	1303	Hs.101302	NM_004370	ENSG00000111799	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	"collagen, type XII, alpha 1"	protein-coding
chr1.1685424.-	chr1	1685424	1685425	-	0	NA	"intron (NM_001198993, intron 10 of 11)"	CpG	-4657	NM_001198995	65220	Hs.733075	NM_001198993	ENSG00000008130	NADK	dJ283E3.1	NAD kinase	protein-coding
chr1.218165475.-	chr1	218165475	218165476	-	0	NA	Intergenic	AluSq|SINE|Alu	-99233	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr2.10916510.-	chr2	10916510	10916511	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36450	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr9.129375415.-	chr9	129375415	129375416	-	0	NA	Intergenic	CpG	1307	NM_001174147	4010	Hs.129133	NM_001174146	ENSG00000136944	LMX1B	LMX1.2|NPS1	"LIM homeobox transcription factor 1, beta"	protein-coding
chr8.144267553.-	chr8	144267553	144267554	-	0	NA	Intergenic	CpG	25500	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr20.32072344.+	chr20	32072344	32072345	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5584	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr11.9503839.-	chr11	9503839	9503840	-	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	-21327	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr10.28821885.-	chr10	28821885	28821886	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-463	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr4.3445142.+	chr4	3445142	3445143	+	0	NA	"exon (NM_001528, exon 4 of 14)"	"exon (NM_001528, exon 4 of 14)"	1416	NM_001528	3083	Hs.104	NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
chr10.42644590.-	chr10	42644590	42644591	-	0	NA	Intergenic	Intergenic	-218903	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chrM.2947.+	chrM	2947	2948	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.48742490.-	chr3	48742490	48742491	-	0	NA	"intron (NM_001005910, intron 1 of 2)"	AluY|SINE|Alu	-12221	NM_001146179	51447	Hs.595983	NM_001005909	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
chr14.107211184.+	chr14	107211184	107211185	+	0	NA	Intergenic	Intergenic	272729	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	miscRNA
chr7.45125730.-	chr7	45125730	45125731	-	0	NA	"intron (NM_001146334, intron 1 of 7)"	"intron (NM_001146334, intron 1 of 7)"	-2763	NM_001146334	23148	Hs.96633	NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
chrX.133328811.+	chrX	133328811	133328812	+	0	NA	Intergenic	AluSg|SINE|Alu	-24503	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr3.48117708.+	chr3	48117708	48117709	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13061	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr21.11107010.+	chr21	11107010	11107011	+	0	NA	Intergenic	CpG	-8073	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chrX.96497948.+	chrX	96497948	96497949	+	0	NA	"intron (NM_006729, intron 22 of 26)"	AluY|SINE|Alu	359041	NM_013347	29935	Hs.659349	NM_013347	ENSG00000204086	RPA4	HSU24186	"replication protein A4, 30kDa"	protein-coding
chr12.8830945.-	chr12	8830945	8830946	-	0	NA	Intergenic	AluSp|SINE|Alu	15512	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr3.126260581.-	chr3	126260581	126260582	-	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	-17177	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chrM.6568.-	chrM	6568	6569	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.151742029.-	chr1	151742029	151742030	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2898	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr9.88491238.-	chr9	88491238	88491239	-	0	NA	Intergenic	AluYc|SINE|Alu	64819	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr8.26241059.-	chr8	26241059	26241060	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-536	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr5.54539386.+	chr5	54539386	54539387	+	0	NA	Intergenic	AluSc|SINE|Alu	-9878	NM_021147	10309	Hs.3041	NM_001024592	ENSG00000152669	CCNO	CCNU|UDG2	cyclin O	protein-coding
chr2.183903205.+	chr2	183903205	183903206	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	24	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr13.31735110.+	chr13	31735110	31735111	+	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	1007	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr10.134216481.+	chr10	134216481	134216482	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5779	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr19.38711899.+	chr19	38711899	38711900	+	0	NA	"intron (NM_001135156, intron 3 of 11)"	AluSx|SINE|Alu	2991	NM_001135155	8193	Hs.631576	NM_001135155	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	"D4, zinc and double PHD fingers family 1"	protein-coding
chr19.34623425.+	chr19	34623425	34623426	+	0	NA	Intergenic	SVA_D|Other|Other	-39927	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr16.89034207.+	chr16	89034207	89034208	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9297	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr1.217697532.-	chr1	217697532	217697533	-	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	-106877	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr11.1098542.-	chr11	1098542	1098543	-	0	NA	"intron (NM_002457, intron 37 of 49)"	"intron (NM_002457, intron 37 of 49)"	-23667	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr12.12518370.+	chr12	12518370	12518371	+	0	NA	"intron (NM_058169, intron 2 of 3)"	AluJb|SINE|Alu	8350	NM_058169	118426	Hs.720779	NM_058169	ENSG00000165714	LOH12CR1	LOH1CR12	"loss of heterozygosity, 12, chromosomal region 1"	protein-coding
chr8.3501037.-	chr8	3501037	3501038	-	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	-1351291	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr3.177129373.-	chr3	177129373	177129374	-	0	NA	Intergenic	AluSx1|SINE|Alu	30336	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	miscRNA
chr9.138959142.-	chr9	138959142	138959143	-	0	NA	"intron (NM_144653, intron 1 of 5)"	L1MB8|LINE|L1	-27989	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr20.62108038.-	chr20	62108038	62108039	-	0	NA	Intergenic	AluSq2|SINE|Alu	4045	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr17.77198177.-	chr17	77198177	77198178	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-127158	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr16.181428.+	chr16	181428	181429	+	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	7269	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr5.55541991.-	chr5	55541991	55541992	-	0	NA	Intergenic	AluJr|SINE|Alu	12805	NM_024669	79722	Hs.436214	NM_001039935	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
chr14.101892576.+	chr14	101892576	101892577	+	0	NA	Intergenic	AluY|SINE|Alu	129437	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr1.31586345.-	chr1	31586345	31586346	-	0	NA	Intergenic	AluY|SINE|Alu	47781	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr6.157468591.+	chr6	157468591	157468592	+	0	NA	"intron (NM_020732, intron 8 of 19)"	C-rich|Low_complexity|Low_complexity	276662	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr8.41166042.+	chr8	41166042	41166043	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	948	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr11.63286757.+	chr11	63286757	63286758	+	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	11298	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr11.66224140.+	chr11	66224140	66224141	+	0	NA	Intergenic	AluY|SINE|Alu	-9658	NM_001243135	246330	Hs.656875	NM_001098510	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
chr11.82444026.-	chr11	82444026	82444027	-	0	NA	"exon (NM_175885, exon 1 of 1)"	"exon (NM_175885, exon 1 of 1)"	-880	NM_175885	220382	Hs.448218	NM_175885	ENSG00000182103	FAM181B	-	"family with sequence similarity 181, member B"	protein-coding
chr2.70247637.-	chr2	70247637	70247638	-	0	NA	"intron (NR_033872, intron 7 of 10)"	AluSx3|SINE|Alu	58240	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr1.247536543.-	chr1	247536543	247536544	-	0	NA	Intergenic	AluSx3|SINE|Alu	41498	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr20.50318710.+	chr20	50318710	50318711	+	0	NA	"intron (NM_006045, intron 4 of 27)"	AluSx1|SINE|Alu	66198	NM_006045	10079	Hs.743248	NM_006045	ENSG00000054793	ATP9A	ATPIIA	"ATPase, class II, type 9A"	protein-coding
chr16.88772898.+	chr16	88772898	88772899	+	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	7	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr2.136633763.+	chr2	136633763	136633764	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	284	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr6.466873.-	chr6	466873	466874	-	0	NA	Intergenic	Intergenic	-75134	NM_002460	3662	Hs.401013	NM_001195286	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
chr10.43916241.-	chr10	43916241	43916242	-	0	NA	Intergenic	AluSz6|SINE|Alu	11545	NM_001098204	3185	Hs.712955	NM_001098204	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
chr20.39978497.+	chr20	39978497	39978498	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8937	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr4.513544.+	chr4	513544	513545	+	0	NA	"intron (NM_001127178, intron 6 of 12)"	"intron (NM_001127178, intron 6 of 12)"	20555	NM_001127178	54872	Hs.7099	NM_001127178	ENSG00000174227	PIGG	GPI7|LAS21|PRO4405|RLGS1930	"phosphatidylinositol glycan anchor biosynthesis, class G"	protein-coding
chr5.78890163.-	chr5	78890163	78890164	-	0	NA	Intergenic	AluY|SINE|Alu	18080	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr18.74505062.+	chr18	74505062	74505063	+	0	NA	Intergenic	Intergenic	29189	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr2.159693874.+	chr2	159693874	159693875	+	0	NA	Intergenic	AluSp|SINE|Alu	42045	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr12.31575296.-	chr12	31575296	31575297	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96137	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr8.85063582.+	chr8	85063582	85063583	+	0	NA	Intergenic	AluY|SINE|Alu	-31871	NM_001100393	138046	Hs.121663	NM_001100391	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
chr11.89900034.+	chr11	89900034	89900035	+	0	NA	"intron (NM_005467, intron 11 of 18)"	"intron (NM_005467, intron 11 of 18)"	32216	NM_005467	10003	Hs.503560	NM_005467	ENSG00000077616	NAALAD2	GCPIII|GPCIII|NAADALASE2|NAALADASE2	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding
chr19.18253584.-	chr19	18253584	18253585	-	0	NA	"intron (NM_015016, intron 20 of 26)"	AluJb|SINE|Alu	10404	NR_073517	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr5.1494519.+	chr5	1494519	1494520	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29557	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr15.76627331.+	chr15	76627331	76627332	+	0	NA	Intergenic	AluSg|SINE|Alu	-1816	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr17.66130520.+	chr17	66130520	66130521	+	0	NA	"non-coding (NR_027418, exon 6 of 6)"	"non-coding (NR_027418, exon 6 of 6)"	32824	NR_027418	100499466	Hs.647405	NR_027418		LINC00674	-	long intergenic non-protein coding RNA 674	miscRNA
chr7.5322931.+	chr7	5322931	5322932	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	370	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chrX.81762758.+	chrX	81762758	81762759	+	0	NA	Intergenic	AluY|SINE|Alu	-1000511	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr7.61969291.+	chr7	61969291	61969292	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795143	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr2.85638994.+	chr2	85638994	85638995	+	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	-1174	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr1.156527493.-	chr1	156527493	156527494	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14903	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr7.63023271.-	chr7	63023271	63023272	-	0	NA	Intergenic	Intergenic	58197	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr3.194706069.-	chr3	194706069	194706070	-	0	NA	Intergenic	Intergenic	-276919	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	miscRNA
chr13.100422953.+	chr13	100422953	100422954	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluSq|SINE|Alu	127640	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr8.110510485.-	chr8	110510485	110510486	-	0	NA	"intron (NM_177531, intron 65 of 77)"	AluYb8|SINE|Alu	41444	NM_198120	9166	Hs.409368	NM_004215	ENSG00000147654	EBAG9	EB9|PDAF|RCAS1	"estrogen receptor binding site associated, antigen, 9"	protein-coding
chr9.11197011.-	chr9	11197011	11197012	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584288	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr22.43506969.-	chr22	43506969	43506970	-	0	NA	"intron (NM_001197, intron 1 of 4)"	CpG	-215	NM_001197	638	Hs.475055	NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2-interacting killer (apoptosis-inducing)	protein-coding
chr17.18785199.-	chr17	18785199	18785200	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16417	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr11.83150125.+	chr11	83150125	83150126	+	0	NA	Intergenic	AluSx|SINE|Alu	-152748	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr9.121872001.-	chr9	121872001	121872002	-	0	NA	Intergenic	AluYk4|SINE|Alu	-259738	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr7.1001915.-	chr7	1001915	1001916	-	0	NA	Intergenic	Intergenic	7626	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr10.26961201.+	chr10	26961201	26961202	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25394	NM_014317	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1	"prenyl (decaprenyl) diphosphate synthase, subunit 1"	protein-coding
chr9.72101684.-	chr9	72101684	72101685	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157443	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr19.23432259.+	chr19	23432259	23432260	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	913	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr19.1809851.-	chr19	1809851	1809852	-	0	NA	"intron (NR_047593, intron 3 of 28)"	"intron (NR_047593, intron 3 of 28)"	-2385	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr20.57575082.+	chr20	57575082	57575083	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7227	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr4.49121040.-	chr4	49121040	49121041	-	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-132775	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr5.89746451.+	chr5	89746451	89746452	+	0	NA	Intergenic	AluSp|SINE|Alu	24134	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr11.777220.+	chr11	777220	777221	+	0	NA	"intron (NM_182612, intron 1 of 7)"	CpG	267	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr2.10952985.-	chr2	10952985	10952986	-	0	NA	promoter-TSS (NM_005742)	promoter-TSS (NM_005742)	25	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr8.125234419.-	chr8	125234419	125234420	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150521	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr8.141523815.-	chr8	141523815	141523816	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1734	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr6.119546110.-	chr6	119546110	119546111	-	0	NA	"intron (NM_005907, intron 6 of 12)"	AluSg|SINE|Alu	75752	NM_001100411	79632	Hs.443789	NM_001100411	ENSG00000111879	FAM184A	C6orf60	"family with sequence similarity 184, member A"	protein-coding
chr18.3450996.+	chr18	3450996	3450997	+	0	NA	promoter-TSS (NM_173210)	promoter-TSS (NM_173210)	-595	NM_170695	7050	Hs.373550	NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB-induced factor homeobox 1	protein-coding
chr13.23356654.-	chr13	23356654	23356655	-	0	NA	Intergenic	AluY|SINE|Alu	-115666	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	"brain abundant, membrane attached signal protein 1 pseudogene 1"	pseudo
chr16.3203707.+	chr16	3203707	3203708	+	0	NA	Intergenic	AluSg|SINE|Alu	18573	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr8.12427603.-	chr8	12427603	12427604	-	0	NA	"intron (NR_047662, intron 8 of 8)"	AluJr|SINE|Alu	-95517	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr16.30960885.-	chr16	30960885	30960886	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-480	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr12.33024431.+	chr12	33024431	33024432	+	0	NA	"intron (NM_001005242, intron 3 of 12)"	AluSg|SINE|Alu	25349	NM_004572	5318	Hs.164384	NM_001005242	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
chr14.102109460.-	chr14	102109460	102109461	-	0	NA	Intergenic	AluY|SINE|Alu	-81772	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chrX.67548023.-	chrX	67548023	67548024	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105276	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr1.2721532.+	chr1	2721532	2721533	+	0	NA	Intergenic	Intergenic	-15302	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr18.2377801.+	chr18	2377801	2377802	+	0	NA	Intergenic	AluSg7|SINE|Alu	193688	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr17.40543990.+	chr17	40543990	40543991	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3477	NM_139276	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr14.97183993.-	chr14	97183993	97183994	-	0	NA	Intergenic	AluY|SINE|Alu	79691	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr11.67395050.+	chr11	67395050	67395051	+	0	NA	TTS (NM_181843)	TTS (NM_181843)	2358	NM_001243750	254552	Hs.433329	NM_001243750	ENSG00000167799	NUDT8	-	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding
chr7.157253555.-	chr7	157253555	157253556	-	0	NA	Intergenic	AluSz|SINE|Alu	-113559	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr20.39978515.-	chr20	39978515	39978516	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8955	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr17.37009828.+	chr17	37009828	37009829	+	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	225	NM_000978	9349	Hs.406300	NM_000978		RPL23	L23|rpL17	ribosomal protein L23	protein-coding
chr5.103114760.+	chr5	103114760	103114761	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-216270	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr7.139162652.-	chr7	139162652	139162653	-	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	-5805	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr18.63211146.-	chr18	63211146	63211147	-	0	NA	Intergenic	AluY|SINE|Alu	206342	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr6.12012489.+	chr6	12012489	12012490	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-235	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chrX.40029648.-	chrX	40029648	40029649	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6934	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.4141909.+	chr19	4141909	4141910	+	0	NA	Intergenic	AluY|SINE|Alu	-11689	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr12.132116763.+	chr12	132116763	132116764	+	0	NA	Intergenic	L1ME1|LINE|L1	-78869	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr12.106606465.-	chr12	106606465	106606466	-	0	NA	Intergenic	L1PA7|LINE|L1	-35248	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr2.39016625.-	chr2	39016625	39016626	-	0	NA	Intergenic	AluY|SINE|Alu	-11298	NM_024775	79833	Hs.143818	NM_024775		GEMIN6	-	gem (nuclear organelle) associated protein 6	protein-coding
chr4.84864626.+	chr4	84864626	84864627	+	0	NA	Intergenic	SVA_D|Other|Other	407156	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr1.247464270.-	chr1	247464270	247464271	-	0	NA	"exon (NM_032752, exon 9 of 9)"	"exon (NM_032752, exon 9 of 9)"	-30775	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr4.9382796.+	chr4	9382796	9382797	+	0	NA	Intergenic	CpG	13196	NR_027279	391622	Hs.722658	NR_027279	ENSG00000205946	USP17L6P	DUB4|USP17L6|vDUB4	"ubiquitin specific peptidase 17-like family member 6, pseudogene"	pseudo
chr14.67493570.-	chr14	67493570	67493571	-	0	NA	"intron (NM_020806, intron 10 of 22)"	AluYf4|SINE|Alu	162540	NM_173526	161142	Hs.733286	NM_173526	ENSG00000172717	FAM71D	C14orf54	"family with sequence similarity 71, member D"	protein-coding
chr1.54966378.-	chr1	54966378	54966379	-	0	NA	Intergenic	AluSq|SINE|Alu	47429	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr8.40290213.-	chr8	40290213	40290214	-	0	NA	Intergenic	L1PA2|LINE|L1	-279226	NM_020130	56892	Hs.644772	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
chr17.27717836.+	chr17	27717836	27717837	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-107	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr21.35747630.-	chr21	35747630	35747631	-	0	NA	promoter-TSS (NM_058182)	promoter-TSS (NM_058182)	119	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr16.30810953.-	chr16	30810953	30810954	-	0	NA	Intergenic	AluSx|SINE|Alu	12430	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr12.132969218.-	chr12	132969218	132969219	-	0	NA	Intergenic	Intergenic	63313	NM_001122636	50614	Hs.658249	NM_001122636	ENSG00000182870	GALNT9	GALNAC-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)	protein-coding
chr14.105814778.+	chr14	105814778	105814779	+	0	NA	"intron (NM_001100913, intron 1 of 24)"	"intron (NM_001100913, intron 1 of 24)"	-32864	NM_001242787	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr2.182902212.+	chr2	182902212	182902213	+	0	NA	"intron (NR_048566, intron 2 of 5)"	AluSc|SINE|Alu	51661	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	"protein phosphatase 1, regulatory (inhibitor) subunit 1C"	protein-coding
chr2.11817354.+	chr2	11817354	11817355	+	0	NA	promoter-TSS (NM_001261428)	promoter-TSS (NM_001261428)	-351	NM_001261428	23175	Hs.739141	NM_001261427	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
chr7.158462213.-	chr7	158462213	158462214	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35307	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr8.23131065.-	chr8	23131065	23131066	-	0	NA	Intergenic	AluSc8|SINE|Alu	14547	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr14.105134404.+	chr14	105134404	105134405	+	0	NA	Intergenic	AluSz|SINE|Alu	9682	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr3.196619060.-	chr3	196619060	196619061	-	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	-24333	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr7.95178743.+	chr7	95178743	95178744	+	0	NA	Intergenic	AluY|SINE|Alu	47182	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr7.128141952.-	chr7	128141952	128141953	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25169	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr7.95234855.+	chr7	95234855	95234856	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8930	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr5.39649207.+	chr5	39649207	39649208	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223872	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr4.1655013.-	chr4	1655013	1655014	-	0	NA	"intron (NM_001013622, intron 4 of 4)"	"intron (NM_001013622, intron 4 of 4)"	-30705	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr16.70207328.+	chr16	70207328	70207329	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-600	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr5.179373639.+	chr5	179373639	179373640	+	0	NA	Intergenic	AluY|SINE|Alu	-38783	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr1.28908607.+	chr1	28908607	28908608	+	0	NA	promoter-TSS (NR_024127)	promoter-TSS (NR_024127)	-241	NR_024127	85028	Hs.632377	NR_024127	ENSG00000197989	SNHG12	C1orf79|LINC00100|NCRNA00100|RP4-669K10.5	small nucleolar RNA host gene 12 (non-protein coding)	miscRNA
chr22.44600840.+	chr22	44600840	44600841	+	0	NA	"intron (NM_022141, intron 12 of 13)"	"intron (NM_022141, intron 12 of 13)"	23583	NM_001137606	64098	Hs.666944	NM_001137606	ENSG00000138964	PARVG	-	"parvin, gamma"	protein-coding
chr16.89034184.+	chr16	89034184	89034185	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9320	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chrX.29584307.-	chrX	29584307	29584308	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649368	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr16.1486428.+	chr16	1486428	1486429	+	0	NA	"intron (NM_001143980, intron 13 of 16)"	"intron (NM_001143980, intron 13 of 16)"	8062	NM_001143980	645811	Hs.355232	NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
chr4.54204869.+	chr4	54204869	54204870	+	0	NA	"intron (NM_152540, intron 2 of 8)"	AluYa5|SINE|Alu	27373	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr1.156878609.-	chr1	156878609	156878610	-	0	NA	"exon (NM_001080471, exon 10 of 23)"	"exon (NM_001080471, exon 10 of 23)"	11815	NM_144702	149499	Hs.491734	NM_144702	ENSG00000160838	LRRC71	C1orf92|RP11-356J7.1	leucine rich repeat containing 71	protein-coding
chr6.109611737.+	chr6	109611737	109611738	+	0	NA	Intergenic	CpG	-3769	NR_028595	221262	Hs.723571	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	"coiled-coil domain containing 162, pseudogene"	pseudo
chr20.61975107.-	chr20	61975107	61975108	-	0	NA	"non-coding (NR_046317, exon 6 of 6)"	"non-coding (NR_046317, exon 6 of 6)"	-17641	NM_000744	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr8.143373420.+	chr8	143373420	143373421	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93703	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr1.2157793.-	chr1	2157793	2157794	-	0	NA	Intergenic	AluJb|SINE|Alu	2341	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr7.95178703.+	chr7	95178703	95178704	+	0	NA	Intergenic	AluY|SINE|Alu	47222	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr13.21644845.+	chr13	21644845	21644846	+	0	NA	Intergenic	AluSx|SINE|Alu	-9123	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr11.31793963.-	chr11	31793963	31793964	-	0	NA	"intron (NM_019040, intron 9 of 9)"	AluSx|SINE|Alu	-38727	NM_001258465	5080	Hs.611376	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|MGDA|WAGR	paired box 6	protein-coding
chr20.62029547.+	chr20	62029547	62029548	+	0	NA	Intergenic	Intergenic	-36799	NM_001256573	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr17.57868955.-	chr17	57868955	57868956	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49672	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr7.36338587.-	chr7	36338587	36338588	-	0	NA	"intron (NM_030636, intron 7 of 7)"	"intron (NM_030636, intron 7 of 7)"	-68195	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr1.59041960.-	chr1	59041960	59041961	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1206	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr3.64431136.+	chr3	64431136	64431137	+	0	NA	Intergenic	CpG	-220005	NM_198859	166336	Hs.743295	NM_198859	ENSG00000163637	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
chr6.127845951.+	chr6	127845951	127845952	+	0	NA	Intergenic	AluY|SINE|Alu	-5451	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr14.104604959.+	chr14	104604959	104604960	+	0	NA	promoter-TSS (NM_015656)	promoter-TSS (NM_015656)	-101	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
chr13.112597790.+	chr13	112597790	112597791	+	0	NA	Intergenic	MIRc|SINE|MIR	-124123	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr7.99630344.-	chr7	99630344	99630345	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17073	NM_145914	7589	Hs.632294	NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
chr1.21023458.+	chr1	21023458	21023459	+	0	NA	"intron (NM_001122819, intron 6 of 14)"	"intron (NM_001122819, intron 6 of 14)"	20859	NM_020816	57576	Hs.130411	NM_001122819	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
chr16.723836.+	chr16	723836	723837	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2239	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr10.122148822.+	chr10	122148822	122148823	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67644	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr15.37172823.-	chr15	37172823	37172824	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5911	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chrM.9289.+	chrM	9289	9290	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr7.100044749.-	chr7	100044749	100044750	-	0	NA	Intergenic	Intergenic	10655	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr2.239047566.-	chr2	239047566	239047567	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-203	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr2.239047565.-	chr2	239047565	239047566	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-202	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr7.64198978.+	chr7	64198978	64198979	+	0	NA	Intergenic	SVA_D|Other|Other	-55788	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr7.63582826.-	chr7	63582826	63582827	-	0	NA	Intergenic	AluJo|SINE|Alu	-77005	NM_001159522	442319	Hs.640774	NM_001159522	ENSG00000257482	ZNF727	-	zinc finger protein 727	protein-coding
chr2.85691639.-	chr2	85691639	85691640	-	0	NA	Intergenic	AluSg7|SINE|Alu	-29721	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr9.36596652.+	chr9	36596652	36596653	+	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	23793	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr8.1562659.+	chr8	1562659	1562660	+	0	NA	"intron (NM_004745, intron 3 of 11)"	"intron (NM_004745, intron 3 of 11)"	113127	NM_004745	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr19.16136950.+	chr19	16136950	16136951	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7573	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr1.54954986.+	chr1	54954986	54954987	+	0	NA	Intergenic	CpG	-58821	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr1.171662956.+	chr1	171662956	171662957	+	0	NA	Intergenic	SVA_C|Other|Other	-41183	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr1.53770285.+	chr1	53770285	53770286	+	0	NA	"intron (NM_033300, intron 2 of 16)"	"intron (NM_033300, intron 2 of 16)"	23536	NM_004631	7804	Hs.280387	NM_001018054		LRP8	APOER2|HSZ75190|LRP-8|MCI1	"low density lipoprotein receptor-related protein 8, apolipoprotein e receptor"	protein-coding
chr1.153961743.-	chr1	153961743	153961744	-	0	NA	Intergenic	AluY|SINE|Alu	1496	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr10.135192240.+	chr10	135192240	135192241	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-501	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr7.100044649.+	chr7	100044649	100044650	+	0	NA	Intergenic	AluY|SINE|Alu	-10555	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr18.18991360.-	chr18	18991360	18991361	-	0	NA	"intron (NM_001142966, intron 7 of 32)"	AluY|SINE|Alu	-169157	NM_001142966	80000	Hs.149020	NM_001142966	ENSG00000141449	GREB1L	C18orf6|KIAA1772	growth regulation by estrogen in breast cancer-like	protein-coding
chr7.121013901.+	chr7	121013901	121013902	+	0	NA	"intron (NM_001040020, intron 3 of 9)"	AluY|SINE|Alu	22521	NM_014888	10447	Hs.434053	NM_001040020	ENSG00000196937	FAM3C	ILEI	"family with sequence similarity 3, member C"	protein-coding
chr1.3461454.-	chr1	3461454	3461455	-	0	NA	"intron (NM_001409, intron 4 of 36)"	"intron (NM_001409, intron 4 of 36)"	-15900	NR_030277	693135		NR_030277		MIR551A	MIRN551A	microRNA 551a	miscRNA
chr12.111714709.-	chr12	111714709	111714710	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92216	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chrX.47336595.-	chrX	47336595	47336596	-	0	NA	"intron (NM_153380, intron 1 of 4)"	AluSx1|SINE|Alu	-5750	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr5.89746535.-	chr5	89746535	89746536	-	0	NA	Intergenic	AluSz|SINE|Alu	-24050	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr6.2221715.+	chr6	2221715	2221716	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24153	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr5.141558671.-	chr5	141558671	141558672	-	0	NA	Intergenic	AluSg|SINE|Alu	-70347	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr12.7926761.+	chr12	7926761	7926762	+	0	NA	TTS (NM_001145465)	TTS (NM_001145465)	8949	NM_001145465	360030	Hs.558004	NM_001145465	ENSG00000205857	NANOGNB	-	NANOG neighbor homeobox	protein-coding
chr3.9429646.+	chr3	9429646	9429647	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9528	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr3.29288120.-	chr3	29288120	29288121	-	0	NA	Intergenic	AluY|SINE|Alu	34683	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr21.43198257.-	chr21	43198257	43198258	-	0	NA	Intergenic	Intergenic	11008	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr5.178734421.-	chr5	178734421	178734422	-	0	NA	"intron (NM_021599, intron 2 of 10)"	"intron (NM_021599, intron 2 of 10)"	-38010	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr8.26532460.+	chr8	26532460	26532461	+	0	NA	Intergenic	AluSp|SINE|Alu	96539	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr2.25390990.+	chr2	25390990	25390991	+	0	NA	"intron (NM_001035256, intron 1 of 3)"	AluSp|SINE|Alu	569	NM_000939	5443	Hs.1897	NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
chr3.22843197.+	chr3	22843197	22843198	+	0	NA	Intergenic	L1PA2|LINE|L1	-401587	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr1.240947668.+	chr1	240947668	240947669	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172206	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr22.22259611.-	chr22	22259611	22259612	-	0	NA	Intergenic	AluSq2|SINE|Alu	37641	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr11.66970123.-	chr11	66970123	66970124	-	0	NA	"intron (NM_012308, intron 5 of 20)"	AluY|SINE|Alu	37383	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr16.905204.-	chr16	905204	905205	-	0	NA	"intron (NR_033646, intron 12 of 12)"	"intron (NR_033646, intron 12 of 12)"	-49761	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr15.97879767.-	chr15	97879767	97879768	-	0	NA	Intergenic	AluSp|SINE|Alu	-537892	NR_024172	91948	Hs.130423	NR_024172	ENSG00000251209	LOC91948	-	uncharacterized LOC91948	miscRNA
chrX.153657078.-	chrX	153657078	153657079	-	0	NA	promoter-TSS (NM_001183)	promoter-TSS (NM_001183)	-100	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr10.59351221.+	chr10	59351221	59351222	+	0	NA	Intergenic	AluY|SINE|Alu	-286902	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr20.33005289.-	chr20	33005289	33005290	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	48841	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr12.132116854.+	chr12	132116854	132116855	+	0	NA	Intergenic	L1ME1|LINE|L1	-78778	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr1.109995456.-	chr1	109995456	109995457	-	0	NA	Intergenic	AluY|SINE|Alu	13644	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr2.43378647.+	chr2	43378647	43378648	+	0	NA	Intergenic	AluSg|SINE|Alu	75098	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr16.30810971.-	chr16	30810971	30810972	-	0	NA	Intergenic	AluSx|SINE|Alu	12448	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr2.27588380.-	chr2	27588380	27588381	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4539	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr17.72208502.-	chr17	72208502	72208503	-	0	NA	"intron (NR_026914, intron 1 of 1)"	CpG	-958	NR_026914	85001	Hs.706954	NM_032915	ENSG00000246731	MGC16275	-	uncharacterized protein MGC16275	miscRNA
chr19.47364599.+	chr19	47364599	47364600	+	0	NA	Intergenic	Intergenic	-10396	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr10.120427008.-	chr10	120427008	120427009	-	0	NA	Intergenic	AluSp|SINE|Alu	71848	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr17.22012667.-	chr17	22012667	22012668	-	0	NA	Intergenic	Intergenic	9770	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr14.23706420.+	chr14	23706420	23706421	+	0	NA	Intergenic	AluSz|SINE|Alu	48889	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr17.47363954.+	chr17	47363954	47363955	+	0	NA	Intergenic	AluSx|SINE|Alu	38349	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chrY.9930631.+	chrY	9930631	9930632	+	0	NA	Intergenic	CpG	182224	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr14.55349952.+	chr14	55349952	55349953	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-5041	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr7.36403831.+	chr7	36403831	36403832	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	2951	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr10.82057930.+	chr10	82057930	82057931	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8496	NM_000429	4143	Hs.282670	NM_000429	ENSG00000151224	MAT1A	MAT|MATA1|SAMS|SAMS1	"methionine adenosyltransferase I, alpha"	protein-coding
chr2.240371811.+	chr2	240371811	240371812	+	0	NA	Intergenic	SVA_D|Other|Other	-49168	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr2.38595073.+	chr2	38595073	38595074	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluSq2|SINE|Alu	9359	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr7.394836.+	chr7	394836	394837	+	0	NA	Intergenic	Intergenic	-24555	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr1.24513573.-	chr1	24513573	24513574	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-192	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr1.227015937.+	chr1	227015937	227015938	+	0	NA	Intergenic	Intergenic	-42336	NM_012486	5664	Hs.25363	NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
chr1.28003916.-	chr1	28003916	28003917	-	0	NA	Intergenic	AluY|SINE|Alu	5192	NM_002038	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr7.36403829.+	chr7	36403829	36403830	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	2953	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr2.43253954.-	chr2	43253954	43253955	-	0	NA	Intergenic	Intergenic	-199791	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr5.137550372.+	chr5	137550372	137550373	+	0	NA	Intergenic	AluY|SINE|Alu	-1340	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chrX.133564966.-	chrX	133564966	133564967	-	0	NA	Intergenic	AluSp|SINE|Alu	29209	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr10.32470083.-	chr10	32470083	32470084	-	0	NA	Intergenic	AluSz|SINE|Alu	124712	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr16.74363451.-	chr16	74363451	74363452	-	0	NA	Intergenic	Intergenic	-32778	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 7"	protein-coding
chr2.173941032.-	chr2	173941032	173941033	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-467	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr1.240947774.+	chr1	240947774	240947775	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172312	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr2.202612418.-	chr2	202612418	202612419	-	0	NA	"intron (NM_020919, intron 8 of 33)"	AluY|SINE|Alu	-33477	NM_001135745	57679	Hs.621812	NM_001135745	ENSG00000003393	ALS2	ALS2CR6|ALSJ|IAHSP|PLSJ	amyotrophic lateral sclerosis 2 (juvenile)	protein-coding
chr13.35082309.-	chr13	35082309	35082310	-	0	NA	"intron (NR_047036, intron 2 of 2)"	AluY|SINE|Alu	-132513	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr22.18293041.-	chr22	18293041	18293042	-	0	NA	"intron (NM_015241, intron 28 of 31)"	AluY|SINE|Alu	35610	NM_001244567	637	Hs.591054	NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
chr2.207270694.-	chr2	207270694	207270695	-	0	NA	Intergenic	AluY|SINE|Alu	37674	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr13.50701755.-	chr13	50701755	50701756	-	0	NA	Intergenic	CpG-6444	2078	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr20.5213452.+	chr20	5213452	5213453	+	0	NA	Intergenic	AluJr4|SINE|Alu	81563	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr4.3647804.+	chr4	3647804	3647805	+	0	NA	Intergenic	Intergenic	31778	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	miscRNA
chr5.118283989.-	chr5	118283989	118283990	-	0	NA	"intron (NM_173666, intron 1 of 5)"	AluY|SINE|Alu	26292	NR_036262	100422885		NR_036262		MIR1244-2	-	microRNA 1244-2	miscRNA
chr16.24740943.-	chr16	24740943	24740944	-	0	NA	promoter-TSS (NM_014494)	promoter-TSS (NM_014494)	106	NM_014494	27327	Hs.655057	NM_014494	ENSG00000090905	TNRC6A	CAGH26|GW1|GW182|TNRC6	trinucleotide repeat containing 6A	protein-coding
chr3.53118169.-	chr3	53118169	53118170	-	0	NA	Intergenic	Intergenic	38080	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr6.4780580.+	chr6	4780580	4780581	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3900	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr6.21897084.+	chr6	21897084	21897085	+	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	230409	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chrX.24027802.-	chrX	24027802	24027803	-	0	NA	"intron (NM_030624, intron 2 of 3)"	AluSx|SINE|Alu	-17501	NM_030624	80311	Hs.495854	NM_030624	ENSG00000174010	KLHL15	-	kelch-like family member 15	protein-coding
chr2.11248106.+	chr2	11248106	11248107	+	0	NA	"intron (NR_040080, intron 6 of 8)"	L1MEd|LINE|L1	24196	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	miscRNA
chr11.69451965.-	chr11	69451965	69451966	-	0	NA	Intergenic	CpG	3908	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr16.88494640.-	chr16	88494640	88494641	-	0	NA	"exon (NM_001127464, exon 1 of 2)"	"exon (NM_001127464, exon 1 of 2)"	-761	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr18.29434811.+	chr18	29434811	29434812	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88280	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr3.36494767.-	chr3	36494767	36494768	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72670	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr1.248394305.-	chr1	248394305	248394306	-	0	NA	Intergenic	AluSc8|SINE|Alu	7926	NM_017504	26245	Hs.381309	NM_017504	ENSG00000171180	OR2M4	HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100	"olfactory receptor, family 2, subfamily M, member 4"	protein-coding
chr18.77244879.+	chr18	77244879	77244880	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84553	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr3.93689471.-	chr3	93689471	93689472	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3463	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr2.119939744.-	chr2	119939744	119939745	-	0	NA	Intergenic	Intergenic	23273	NM_182528	165257	Hs.433493	NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	"complement component 1, q subcomponent-like 2"	protein-coding
chr12.92086073.+	chr12	92086073	92086074	+	0	NA	Intergenic	AluSx3|SINE|Alu	449416	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr6.103369572.+	chr6	103369572	103369573	+	0	NA	Intergenic	LTR17|LTR|ERV1	1522711	NM_021956	2898	Hs.98262	NM_001166247	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	"glutamate receptor, ionotropic, kainate 2"	protein-coding
chr3.82554684.-	chr3	82554684	82554685	-	0	NA	Intergenic	MER52A|LTR|ERV1	743734	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr1.101426774.+	chr1	101426774	101426775	+	0	NA	"intron (NM_133496, intron 8 of 10)"	AluY|SINE|Alu	64588	NM_015958	51611	Hs.440776	NM_001077394		DPH5	CGI-30|HSPC143|NPD015	DPH5 homolog (S. cerevisiae)	protein-coding
chr22.19747120.-	chr22	19747120	19747121	-	0	NA	"5' UTR (NM_005992, exon 2 of 10)"	"5' UTR (NM_005992, exon 2 of 10)"	-2894	NM_005992	6899	Hs.173984	NM_005992	ENSG00000184058	TBX1	CAFS|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCFS	T-box 1	protein-coding
chr13.50138600.-	chr13	50138600	50138601	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21119	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr6.24720968.+	chr6	24720968	24720969	+	0	NA	Intergenic	CpG	-1565	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr8.609246.-	chr8	609246	609247	-	0	NA	Intergenic	Intergenic	-71980	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr22.22550462.+	chr22	22550462	22550463	+	0	NA	Intergenic	Intergenic	-48738	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr22.46326499.+	chr22	46326499	46326500	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46509	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr9.138437861.+	chr9	138437861	138437862	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-124	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr14.105158910.+	chr14	105158910	105158911	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2967	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr10.43563285.+	chr10	43563285	43563286	+	0	NA	Intergenic	Intergenic	-9232	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr10.81965078.+	chr10	81965078	81965079	+	0	NA	"intron (NM_145869, intron 1 of 16)"	CpG	250	NM_145869	311	Hs.530291	NM_001157	ENSG00000122359	ANXA11	ANX11|CAP50	annexin A11	protein-coding
chr1.107439621.+	chr1	107439621	107439622	+	0	NA	Intergenic	AluY|SINE|Alu	-159646	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
chr9.135947040.+	chr9	135947040	135947041	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9675	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr9.8858130.-	chr9	8858130	8858131	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124184	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr3.48533717.+	chr3	48533717	48533718	+	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	7766	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr19.4065731.-	chr19	4065731	4065732	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1085	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr10.6261460.+	chr10	6261460	6261461	+	0	NA	"intron (NM_001145443, intron 6 of 14)"	"intron (NM_001145443, intron 6 of 14)"	16620	NM_004566	5209	Hs.195471	NM_001145443	ENSG00000170525	PFKFB3	IPFK2|PFK2	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3"	protein-coding
chr12.133020960.+	chr12	133020960	133020961	+	0	NA	Intergenic	Intergenic	-46197	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr6.17281946.-	chr6	17281946	17281947	-	0	NA	promoter-TSS (NM_153020)	promoter-TSS (NM_153020)	-137	NM_001143942	221662	Hs.519904	NM_001143941	ENSG00000112183	RBM24	RNPC6|dJ259A10.1	RNA binding motif protein 24	protein-coding
chr11.34488051.+	chr11	34488051	34488052	+	0	NA	"intron (NM_001752, intron 10 of 12)"	AluY|SINE|Alu	27579	NM_001752	847	Hs.502302	NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
chr2.240401996.+	chr2	240401996	240401997	+	0	NA	Intergenic	Intergenic	-79353	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr4.69790974.-	chr4	69790974	69790975	-	0	NA	Intergenic	AluY|SINE|Alu	-26535	NR_024010	79799	Hs.122583	NM_024743	ENSG00000135220	UGT2A3	-	"UDP glucuronosyltransferase 2 family, polypeptide A3"	protein-coding
chr5.137550346.+	chr5	137550346	137550347	+	0	NA	Intergenic	AluY|SINE|Alu	-1314	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr2.70780779.-	chr2	70780779	70780780	-	0	NA	"intron (NM_001099691, intron 1 of 5)"	CpG	-368	NM_003236	7039	Hs.628298	NM_001099691	ENSG00000163235	TGFA	TFGA	"transforming growth factor, alpha"	protein-coding
chr19.4054433.-	chr19	4054433	4054434	-	0	NA	"exon (NM_015898, exon 2 of 3)"	"exon (NM_015898, exon 2 of 3)"	-12383	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr9.79995388.+	chr9	79995388	79995389	+	0	NA	"intron (NM_001018037, intron 66 of 70)"	AluSx4|SINE|Alu	-202555	NR_026668	100286938	Hs.662256	NR_026668	ENSG00000232998	VPS13A-AS1	-	VPS13A antisense RNA 1	miscRNA
chr18.61616390.+	chr18	61616390	61616391	+	0	NA	promoter-TSS (NM_001123366)	promoter-TSS (NM_001123366)	-198	NM_001123366	284293	Hs.721604	NM_001123366	ENSG00000221887	HMSD	ACC-6|C18orf53|HSMD-v	histocompatibility (minor) serpin domain containing	protein-coding
chr13.35516792.+	chr13	35516792	35516793	+	0	NA	"5' UTR (NM_015678, exon 1 of 58)"	"5' UTR (NM_015678, exon 1 of 58)"	368	NM_015678	26960	Hs.491172	NM_001204197	ENSG00000172915	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
chr2.47660686.-	chr2	47660686	47660687	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-30480	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr6.33719633.+	chr6	33719633	33719634	+	0	NA	Intergenic	Intergenic	-4871	NM_001142883	117283	Hs.17253	NM_001142883	ENSG00000161896	IP6K3	IHPK3|INSP6K3	inositol hexakisphosphate kinase 3	protein-coding
chr16.3463870.+	chr16	3463870	3463871	+	0	NA	Intergenic	Intergenic	12680	NM_001032292	7727	Hs.155204	NM_001032292	ENSG00000103343	ZNF174	ZSCAN8	zinc finger protein 174	protein-coding
chr19.35418172.+	chr19	35418172	35418173	+	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	365	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr20.34266408.-	chr20	34266408	34266409	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13530	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr17.18755432.-	chr17	18755432	18755433	-	0	NA	Intergenic	AluSp|SINE|Alu	4180	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr10.59351285.+	chr10	59351285	59351286	+	0	NA	Intergenic	AluY|SINE|Alu	-286966	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chrX.99617522.-	chrX	99617522	99617523	-	0	NA	"intron (NM_020766, intron 2 of 4)"	AluY|SINE|Alu	-47749	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr16.6394250.-	chr16	6394250	6394251	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluSq10|SINE|Alu	-325118	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr9.111476124.+	chr9	111476124	111476125	+	0	NA	Intergenic	L1PA7|LINE|L1	142151	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr17.8252938.-	chr17	8252938	8252939	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9750	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr1.161508237.+	chr1	161508237	161508238	+	0	NA	Intergenic	AluYf4|SINE|Alu	11581	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr20.52362409.-	chr20	52362409	52362410	-	0	NA	Intergenic	AluSx|SINE|Alu	-129839	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr10.7626555.+	chr10	7626555	7626556	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35081	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr2.48784484.-	chr2	48784484	48784485	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11675	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr2.120775607.+	chr2	120775607	120775608	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4822	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr18.54318530.+	chr18	54318530	54318531	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-86	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr4.148516434.-	chr4	148516434	148516435	-	0	NA	Intergenic	AluY|SINE|Alu	22105	NM_018241	55751	Hs.203896	NM_018241		TMEM184C	TMEM34	transmembrane protein 184C	protein-coding
chr11.2158765.-	chr11	2158765	2158766	-	0	NA	"intron (NM_001007139, intron 2 of 4)"	"intron (NM_001007139, intron 2 of 4)"	-1439	NM_000612	3481	Hs.272259	NM_000612	ENSG00000167244	IGF2	C11orf43|IGF-II|PP9974	insulin-like growth factor 2 (somatomedin A)	protein-coding
chr1.32122110.-	chr1	32122110	32122111	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11272	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr3.49479567.+	chr3	49479567	49479568	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12810	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr11.89400849.-	chr11	89400849	89400850	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8384	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr13.81915070.-	chr13	81915070	81915071	-	0	NA	Intergenic	LTR12C|LTR|ERV1	999984	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr1.37546480.-	chr1	37546480	37546481	-	0	NA	Intergenic	SVA_D|Other|Other	46636	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr19.33887190.-	chr19	33887190	33887191	-	0	NA	"intron (NM_001166056, intron 10 of 12)"	"intron (NM_001166056, intron 10 of 12)"	-21760	NM_001252296	1054	Hs.429666	NM_001252296	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	"CCAAT/enhancer binding protein (C/EBP), gamma"	protein-coding
chr3.122695680.-	chr3	122695680	122695681	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	699	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr1.2587541.-	chr1	2587541	2587542	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	23060	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr4.8838879.+	chr4	8838879	8838880	+	0	NA	Intergenic	Intergenic	34664	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr10.118500964.-	chr10	118500964	118500965	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1121	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr9.90885000.+	chr9	90885000	90885001	+	0	NA	Intergenic	AluY|SINE|Alu	-118297	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr6.152927874.-	chr6	152927874	152927875	-	0	NA	"intron (NM_182961, intron 3 of 145)"	AluY|SINE|Alu	-30112	NM_033071	23345	Hs.12967	NM_033071	ENSG00000131018	SYNE1	8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2	"spectrin repeat containing, nuclear envelope 1"	protein-coding
chr1.32731844.+	chr1	32731844	32731845	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7868	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr18.72956173.-	chr18	72956173	72956174	-	0	NA	"intron (NM_005786, intron 1 of 1)"	"intron (NM_005786, intron 1 of 1)"	-33463	NM_005786	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
chr7.99630222.+	chr7	99630222	99630223	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17003	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr3.46792314.-	chr3	46792314	46792315	-	0	NA	Intergenic	CpG	6069	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr12.42632413.-	chr12	42632413	42632414	-	0	NA	promoter-TSS (NR_034000)	promoter-TSS (NR_034000)	259	NM_005748	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr9.80376632.-	chr9	80376632	80376633	-	0	NA	"intron (NM_002072, intron 5 of 6)"	SVA_F|Other|Other	113400	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	"guanine nucleotide binding protein (G protein), alpha 14"	protein-coding
chr2.183903206.-	chr2	183903206	183903207	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-23	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr10.59351288.+	chr10	59351288	59351289	+	0	NA	Intergenic	AluY|SINE|Alu	-286969	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr11.86519350.-	chr11	86519350	86519351	-	0	NA	"exon (NM_007173, exon 2 of 2)"	"exon (NM_007173, exon 2 of 2)"	-7859	NM_007173	11098	Hs.25338	NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	"protease, serine, 23"	protein-coding
chr7.393654.-	chr7	393654	393655	-	0	NA	Intergenic	Intergenic	25737	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr5.2391220.-	chr5	2391220	2391221	-	0	NA	Intergenic	Intergenic	-360549	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr1.40367004.+	chr1	40367004	40367005	+	0	NA	"exon (NM_001033081, exon 1 of 2)"	"exon (NM_001033081, exon 1 of 2)"	683	NM_005376	4610	Hs.437922	NM_001033081	ENSG00000116990	MYCL1	LMYC|MYCL|bHLHe38	"v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)"	protein-coding
chr21.34914891.-	chr21	34914891	34914892	-	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	-304	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr7.157129494.+	chr7	157129494	157129495	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-216	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr12.85283160.+	chr12	85283160	85283161	+	0	NA	"intron (NM_001146335, intron 1 of 10)"	AluY|SINE|Alu	23448	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr8.19626747.+	chr8	19626747	19626748	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48171	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr2.86777044.+	chr2	86777044	86777045	+	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	13576	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chrX.153095528.+	chrX	153095528	153095529	+	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	475	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr13.111268066.+	chr13	111268066	111268067	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	135	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr22.22259630.+	chr22	22259630	22259631	+	0	NA	Intergenic	AluSq2|SINE|Alu	-37660	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr17.72919268.-	chr17	72919268	72919269	-	0	NA	promoter-TSS (NM_173477)	promoter-TSS (NM_173477)	-83	NM_173477	124590	Hs.376688	NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	Usher syndrome 1G (autosomal recessive)	protein-coding
chr3.82554674.-	chr3	82554674	82554675	-	0	NA	Intergenic	MER52A|LTR|ERV1	743724	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chrX.48703063.-	chrX	48703063	48703064	-	0	NA	Intergenic	AluSx|SINE|Alu	9027	NM_013271	27344	Hs.522640	NM_013271	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
chr8.98771773.+	chr8	98771773	98771774	+	0	NA	Intergenic	AluSq10|SINE|Alu	-16036	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr14.20778647.+	chr14	20778647	20778648	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4494	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr14.23701965.+	chr14	23701965	23701966	+	0	NA	Intergenic	SVA_C|Other|Other	-49096	NM_012244	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	"solute carrier family 7 (amino acid transporter light chain, L system), member 8"	protein-coding
chr22.18532558.-	chr22	18532558	18532559	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20407	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr16.85512915.-	chr16	85512915	85512916	-	0	NA	Intergenic	AluY|SINE|Alu	132114	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr12.132623245.+	chr12	132623245	132623246	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5635	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr2.62740941.-	chr2	62740941	62740942	-	0	NA	Intergenic	AluY|SINE|Alu	7337	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr3.93689470.+	chr3	93689470	93689471	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3464	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr7.32427441.-	chr7	32427441	32427442	-	0	NA	Intergenic	SVA_E|Other|Other	-70665	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
chr7.95234888.+	chr7	95234888	95234889	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8963	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr18.11959894.-	chr18	11959894	11959895	-	0	NA	Intergenic	SVA_D|Other|Other	21533	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr1.9832323.+	chr1	9832323	9832324	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52227	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr16.4051418.-	chr16	4051418	4051419	-	0	NA	"intron (NM_001116, intron 3 of 10)"	L1MD3|LINE|L1	-114768	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr16.29422139.+	chr16	29422139	29422140	+	0	NA	Intergenic	AluSx|SINE|Alu	-38527	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr15.72816645.-	chr15	72816645	72816646	-	0	NA	"intron (NM_005744, intron 2 of 13)"	AluSz|SINE|Alu	-49978	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	"ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)"	protein-coding
chr6.165205824.-	chr6	165205824	165205825	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517287	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr5.128197048.-	chr5	128197048	128197049	-	0	NA	Intergenic	AluYk4|SINE|Alu	104162	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr17.74632757.-	chr17	74632757	74632758	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7137	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr7.22130137.+	chr7	22130137	22130138	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-144595	NM_001127371	55536	Hs.744069	NM_001127370	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
chrM.16393.+	chrM	16393	16394	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.64811848.+	chr2	64811848	64811849	+	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	-22598	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr3.195928390.-	chr3	195928390	195928391	-	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSz6|SINE|Alu	-9910	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr10.25241188.+	chr10	25241188	25241189	+	0	NA	"intron (NM_020200, intron 1 of 8)"	CpG	345	NM_020200	56952	Hs.405619	NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
chr12.34492686.+	chr12	34492686	34492687	+	0	NA	Intergenic	GSATII|Satellite|centr	317470	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.38755097.-	chr19	38755097	38755098	-	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	1	NM_001166103	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr18.9051697.-	chr18	9051697	9051698	-	0	NA	Intergenic	AluY|SINE|Alu	50931	NM_021074	4729	Hs.464572	NM_021074	ENSG00000178127	NDUFV2	CI-24k	"NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa"	protein-coding
chr7.591466.-	chr7	591466	591467	-	0	NA	"intron (NM_002735, intron 9 of 10)"	C-rich|Low_complexity|Low_complexity	-31438	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr16.11747052.-	chr16	11747052	11747053	-	0	NA	Intergenic	AluSx1|SINE|Alu	15237	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr2.101214349.+	chr2	101214349	101214350	+	0	NA	Intergenic	AluY|SINE|Alu	34931	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr22.49948651.+	chr22	49948651	49948652	+	0	NA	Intergenic	Intergenic	102539	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr2.34373093.+	chr2	34373093	34373094	+	0	NA	Intergenic	MER52D|LTR|ERV1	-419809	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr8.98771800.-	chr8	98771800	98771801	-	0	NA	Intergenic	AluSq10|SINE|Alu	16009	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr16.723800.+	chr16	723800	723801	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2275	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr17.46916906.+	chr17	46916906	46916907	+	0	NA	"intron (NM_001261395, intron 1 of 11)"	AluSx1|SINE|Alu	8556	NM_001261393	10241	Hs.514920	NM_001261390	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
chr9.90884992.-	chr9	90884992	90884993	-	0	NA	Intergenic	AluY|SINE|Alu	118305	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr6.162998546.-	chr6	162998546	162998547	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149618	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr12.50448261.-	chr12	50448261	50448262	-	0	NA	Intergenic	AluSx|SINE|Alu	3159	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr14.102577000.+	chr14	102577000	102577001	+	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	-23488	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chrM.6449.+	chrM	6449	6450	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr20.60832978.+	chr20	60832978	60832979	+	0	NA	"intron (NM_014835, intron 2 of 13)"	AluSx1|SINE|Alu	19398	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr9.138663353.-	chr9	138663353	138663354	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69322	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr3.170641485.-	chr3	170641485	170641486	-	0	NA	Intergenic	SVA_C|Other|Other	15059	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr19.17836945.-	chr19	17836945	17836946	-	0	NA	"exon (NM_018174, exon 5 of 7)"	"exon (NM_018174, exon 5 of 7)"	-6642	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chr4.151523051.+	chr4	151523051	151523052	+	0	NA	"intron (NM_001199282, intron 37 of 56)"	AluY|SINE|Alu	19974	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	-	mab-21-like 2 (C. elegans)	protein-coding
chr5.176292801.-	chr5	176292801	176292802	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33532	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr12.96826030.-	chr12	96826030	96826031	-	0	NA	Intergenic	AluSq2|SINE|Alu	31664	NM_001170464	5128	Hs.506415	NM_001170464	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
chr14.35080568.+	chr14	35080568	35080569	+	0	NA	"intron (NM_021249, intron 1 of 12)"	AluSz6|SINE|Alu	18747	NM_021249	58533	Hs.356647	NM_152233	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
chr11.45686066.-	chr11	45686066	45686067	-	0	NA	"intron (NM_003654, intron 1 of 3)"	"intron (NM_003654, intron 1 of 3)"	-1140	NM_003654	8534	Hs.104576	NM_003654		CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding
chr7.150812573.-	chr7	150812573	150812574	-	0	NA	"intron (NM_031946, intron 1 of 17)"	GC_rich|Low_complexity|Low_complexity	-28747	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr16.749413.-	chr16	749413	749414	-	0	NA	"intron (NM_153350, intron 1 of 5)"	"intron (NM_153350, intron 1 of 5)"	-6412	NM_153350	146330	Hs.513244	NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine-rich repeat protein 16	protein-coding
chr7.5570040.+	chr7	5570040	5570041	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	192	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr19.1529409.-	chr19	1529409	1529410	-	0	NA	"exon (NM_001243079, exon 10 of 14)"	"exon (NM_001243079, exon 10 of 14)"	-5336	NM_001243079	126520	Hs.195352	NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo-like kinase 5	protein-coding
chr12.32064891.-	chr12	32064891	32064892	-	0	NA	Intergenic	AluY|SINE|Alu	47462	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chrX.98017387.+	chrX	98017387	98017388	+	0	NA	Intergenic	AluYa5|SINE|Alu	1177454	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr4.110600288.-	chr4	110600288	110600289	-	0	NA	"intron (NM_017918, intron 4 of 7)"	SVA_A|Other|Other	-24341	NM_001226	839	Hs.654616	NM_001226	ENSG00000138794	CASP6	MCH2	"caspase 6, apoptosis-related cysteine peptidase"	protein-coding
chr1.182234472.-	chr1	182234472	182234473	-	0	NA	Intergenic	AluSz6|SINE|Alu	-126067	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr2.231536948.-	chr2	231536948	231536949	-	0	NA	Intergenic	AluY|SINE|Alu	-28296	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LOC151475	-	uncharacterized LOC151475	miscRNA
chr1.236227867.-	chr1	236227867	236227868	-	0	NA	"intron (NM_002508, intron 1 of 19)"	CpG	-614	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr5.178553538.+	chr5	178553538	178553539	+	0	NA	"intron (NM_014244, intron 17 of 21)"	MER20|DNA|hAT-Charlie	65931	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr19.18180455.-	chr19	18180455	18180456	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17242	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr7.3828918.-	chr7	3828918	3828919	-	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	340399	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr7.1581675.+	chr7	1581675	1581676	+	0	NA	TTS (NM_001097620)	TTS (NM_001097620)	11307	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr6.126111934.+	chr6	126111934	126111935	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	25	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr8.143373433.+	chr8	143373433	143373434	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93716	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr6.105414636.-	chr6	105414636	105414637	-	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	-9713	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr17.74517043.+	chr17	74517043	74517044	+	0	NA	Intergenic	AluJb|SINE|Alu	-6625	NR_033357	768206	Hs.743588	NM_001077620		PRCD	RP36	progressive rod-cone degeneration	protein-coding
chrX.122993634.-	chrX	122993634	122993635	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	28	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr13.44361594.+	chr13	44361594	44361595	+	0	NA	promoter-TSS (NM_001242863)	promoter-TSS (NM_001242863)	-478	NM_017993	55068	Hs.128258	NM_001127615	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
chr4.163164047.-	chr4	163164047	163164048	-	0	NA	Intergenic	AluY|SINE|Alu	78861	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr2.3066984.-	chr2	3066984	3066985	-	0	NA	Intergenic	Intergenic	-314669	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr13.21644945.+	chr13	21644945	21644946	+	0	NA	Intergenic	AluSx|SINE|Alu	-9223	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr4.186162033.-	chr4	186162033	186162034	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30749	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr3.46792430.-	chr3	46792430	46792431	-	0	NA	Intergenic	CpG	6185	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr3.112807971.-	chr3	112807971	112807972	-	0	NA	Intergenic	AluYc|SINE|Alu	69416	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr16.84879518.+	chr16	84879518	84879519	+	0	NA	"intron (NM_031476, intron 3 of 14)"	"intron (NM_031476, intron 3 of 14)"	25931	NM_031476	83716	Hs.617091	NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
chr4.69917210.-	chr4	69917210	69917211	-	0	NA	Intergenic	Harlequin-int|LTR|ERV1	31097	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr1.87259740.-	chr1	87259740	87259741	-	0	NA	Intergenic	AluSq|SINE|Alu	-89487	NM_001206653	51100	Hs.136309	NM_001206651		SH3GLB1	Bif-1|PPP1R70|dJ612B15.2	SH3-domain GRB2-like endophilin B1	protein-coding
chr12.26964552.+	chr12	26964552	26964553	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21579	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr17.74707142.+	chr17	74707142	74707143	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-86	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr2.198058513.-	chr2	198058513	198058514	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117008	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr2.171069794.+	chr2	171069794	171069795	+	0	NA	"intron (NR_045684, intron 3 of 34)"	LTR2B|LTR|ERV1	35139	NR_045683	140469	Hs.671900	NM_001171642	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
chr2.101924975.-	chr2	101924975	101924976	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-203	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr7.56143792.+	chr7	56143792	56143793	+	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	11875	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr3.122695625.+	chr3	122695625	122695626	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-644	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr15.41687855.-	chr15	41687855	41687856	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6803	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr11.66676639.+	chr11	66676639	66676640	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1299	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr17.4926572.-	chr17	4926572	4926573	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12155	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr17.40823506.-	chr17	40823506	40823507	-	0	NA	"exon (NM_024927, exon 8 of 13)"	"exon (NM_024927, exon 8 of 13)"	-4602	NR_073574	79990	Hs.632251	NM_024927	ENSG00000068137	PLEKHH3	-	"pleckstrin homology domain containing, family H (with MyTH4 domain) member 3"	protein-coding
chr7.129327249.-	chr7	129327249	129327250	-	0	NA	"intron (NM_001040110, intron 4 of 10)"	AluSx1|SINE|Alu	-57330	NM_001040110	4899	Hs.654363	NM_001040110	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
chr12.94946995.+	chr12	94946995	94946996	+	0	NA	Intergenic	AluSx|SINE|Alu	-8570	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr12.33592861.-	chr12	33592861	33592862	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	107	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr17.10812854.-	chr17	10812854	10812855	-	0	NA	Intergenic	AluY|SINE|Alu	71436	NM_001101387	644139	Hs.553909	NM_001101387		PIRT	-	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding
chr4.7443238.-	chr4	7443238	7443239	-	0	NA	"intron (NM_020777, intron 2 of 26)"	"intron (NM_020777, intron 2 of 26)"	6538	NM_001085382	768239	Hs.662523	NM_001085382	ENSG00000178597	PSAPL1	-	prosaposin-like 1 (gene/pseudogene)	protein-coding
chr16.1133098.-	chr16	1133098	1133099	-	0	NA	Intergenic	Intergenic	-4317	NM_001053	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr22.50637754.+	chr22	50637754	50637755	+	0	NA	"3' UTR (NM_025204, exon 10 of 10)"	"3' UTR (NM_025204, exon 10 of 10)"	-1654	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr8.21944464.-	chr8	21944464	21944465	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2250	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chr1.12040336.-	chr1	12040336	12040337	-	0	NA	promoter-TSS (NM_014874)	promoter-TSS (NM_014874)	-98	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr7.64493642.-	chr7	64493642	64493643	-	0	NA	Intergenic	SVA_C|Other|Other	5090	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr3.102973983.-	chr3	102973983	102973984	-	0	NA	Intergenic	SVA_D|Other|Other	-820124	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr2.71357881.-	chr2	71357881	71357882	-	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-437	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr7.53196230.+	chr7	53196230	53196231	+	0	NA	Intergenic	AluY|SINE|Alu	92881	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr7.964572.+	chr7	964572	964573	+	0	NA	"intron (NM_006869, intron 3 of 10)"	"intron (NM_006869, intron 3 of 10)"	29717	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr22.39437244.-	chr22	39437244	39437245	-	0	NA	"intron (NM_145298, intron 1 of 6)"	"intron (NM_145298, intron 1 of 6)"	-571	NM_001006666	200316	Hs.659809	NM_001006666		APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F"	protein-coding
chr17.71108204.-	chr17	71108204	71108205	-	0	NA	Intergenic	AluY|SINE|Alu	19351	NM_001159770	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr2.47660760.+	chr2	47660760	47660761	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30554	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr1.161879483.+	chr1	161879483	161879484	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114161	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr19.14156320.-	chr19	14156320	14156321	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13651	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chrX.9366127.+	chrX	9366127	9366128	+	0	NA	Intergenic	AluY|SINE|Alu	-65208	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr6.160985722.-	chr6	160985722	160985723	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53566	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr11.101842926.-	chr11	101842926	101842927	-	0	NA	"intron (NM_020802, intron 6 of 10)"	AluY|SINE|Alu	55673	NM_178127	253935	Hs.318370	NM_178127	ENSG00000187151	ANGPTL5	-	angiopoietin-like 5	protein-coding
chr18.12390613.-	chr18	12390613	12390614	-	0	NA	Intergenic	AluSx1|SINE|Alu	13338	NM_006796	10939	Hs.726355	NM_006796	ENSG00000141385	AFG3L2	SCA28|SPAX5	AFG3 ATPase family member 3-like 2 (S. cerevisiae)	protein-coding
chr22.49557174.-	chr22	49557174	49557175	-	0	NA	Intergenic	Intergenic	-294592	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr6.168204754.+	chr6	168204754	168204755	+	0	NA	Intergenic	Intergenic	-7215	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr16.84670326.-	chr16	84670326	84670327	-	0	NA	Intergenic	AluY|SINE|Alu	11805	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr4.160748518.-	chr4	160748518	160748519	-	0	NA	Intergenic	AluSx1|SINE|Alu	-559520	NM_014247	9693	Hs.113912	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chr8.29303376.+	chr8	29303376	29303377	+	0	NA	Intergenic	AluSx3|SINE|Alu	-95109	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
chr20.59927887.+	chr20	59927887	59927888	+	0	NA	"intron (NM_001794, intron 2 of 15)"	"intron (NM_001794, intron 2 of 15)"	100405	NM_001794	1002	Hs.473231	NM_001252338		CDH4	CAD4|RCAD	"cadherin 4, type 1, R-cadherin (retinal)"	protein-coding
chr14.22030020.+	chr14	22030020	22030021	+	0	NA	Intergenic	AluSx3|SINE|Alu	8855	NM_001005465	26533	Hs.554581	NM_001005465	ENSG00000169208	OR10G3	OR14-40	"olfactory receptor, family 10, subfamily G, member 3"	protein-coding
chr14.106359715.-	chr14	106359715	106359716	-	0	NA	Intergenic	Intergenic	24123	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr19.589044.-	chr19	589044	589045	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	849	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr18.29434827.-	chr18	29434827	29434828	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88264	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr20.49424646.+	chr20	49424646	49424647	+	0	NA	"intron (NM_001010974, intron 1 of 3)"	AluY|SINE|Alu	13179	NM_001010974	55653	Hs.381178	NM_001010974	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
chr2.203100558.+	chr2	203100558	203100559	+	0	NA	"intron (NM_003352, intron 1 of 4)"	AluSg|SINE|Alu	2764	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr5.1494501.-	chr5	1494501	1494502	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29575	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr7.66137140.-	chr7	66137140	66137141	-	0	NA	Intergenic	AluY|SINE|Alu	-43272	NM_001167961	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr1.43189470.-	chr1	43189470	43189471	-	0	NA	Intergenic	Intergenic	-16455	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr6.158438934.+	chr6	158438934	158438935	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	854	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chrX.54371340.+	chrX	54371340	54371341	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13098	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr17.57868978.+	chr17	57868978	57868979	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49649	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr8.107670100.+	chr8	107670100	107670101	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	64	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr19.3220518.-	chr19	3220518	3220519	-	0	NA	Intergenic	AluSc|SINE|Alu	4183	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr4.513531.+	chr4	513531	513532	+	0	NA	"intron (NM_001127178, intron 6 of 12)"	"intron (NM_001127178, intron 6 of 12)"	20542	NM_001127178	54872	Hs.7099	NM_001127178	ENSG00000174227	PIGG	GPI7|LAS21|PRO4405|RLGS1930	"phosphatidylinositol glycan anchor biosynthesis, class G"	protein-coding
chrX.86721033.+	chrX	86721033	86721034	+	0	NA	Intergenic	SVA_C|Other|Other	-51682	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr17.57884691.+	chr17	57884691	57884692	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33936	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr5.36561335.+	chr5	36561335	36561336	+	0	NA	Intergenic	AluSx|SINE|Alu	-45122	NM_001166696	6507	Hs.481918	NM_001166695	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	"solute carrier family 1 (glial high affinity glutamate transporter), member 3"	protein-coding
chr16.1807961.+	chr16	1807961	1807962	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13749	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr3.189635264.-	chr3	189635264	189635265	-	0	NA	Intergenic	AluSz6|SINE|Alu	-87553	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	miscRNA
chr13.111297462.-	chr13	111297462	111297463	-	0	NA	"intron (NM_024537, intron 12 of 14)"	"intron (NM_024537, intron 12 of 14)"	-29531	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr9.130734358.-	chr9	130734358	130734359	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8454	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr2.101924984.-	chr2	101924984	101924985	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-194	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr22.50580025.+	chr22	50580025	50580026	+	0	NA	"intron (NM_001164104, intron 15 of 25)"	AluJb|SINE|Alu	-5459	NM_001164106	54456	Hs.62880	NM_001164104	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	"Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)"	protein-coding
chr11.62418774.-	chr11	62418774	62418775	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-2000	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr6.89377972.+	chr6	89377972	89377973	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295376	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr1.31586452.-	chr1	31586452	31586453	-	0	NA	Intergenic	AluJb|SINE|Alu	47888	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr10.12344458.-	chr10	12344458	12344459	-	0	NA	Intergenic	AluSc8|SINE|Alu	47125	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr17.80693320.+	chr17	80693320	80693321	+	0	NA	promoter-TSS (NM_022158)	promoter-TSS (NM_022158)	-132	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr2.204121216.+	chr2	204121216	204121217	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18052	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr14.97183969.+	chr14	97183969	97183970	+	0	NA	Intergenic	AluY|SINE|Alu	-79715	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr12.34492702.+	chr12	34492702	34492703	+	0	NA	Intergenic	GSATII|Satellite|centr	317486	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr1.62231216.-	chr1	62231216	62231217	-	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	-23067	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr1.1369158.+	chr1	1369158	1369159	+	0	NA	Intergenic	Intergenic	-1745	NM_199121	64856	Hs.449009	NM_022834	ENSG00000179403	VWA1	WARP	von Willebrand factor A domain containing 1	protein-coding
chr15.75135434.+	chr15	75135434	75135435	+	0	NA	"exon (NM_001099436, exon 1 of 16)"	"exon (NM_001099436, exon 1 of 16)"	118	NM_001099436	25989	Hs.513034	NM_015518	ENSG00000140474	ULK3	-	unc-51-like kinase 3 (C. elegans)	protein-coding
chrX.3607786.-	chrX	3607786	3607787	-	0	NA	"intron (NM_005044, intron 1 of 8)"	AluY|SINE|Alu	-23889	NM_005044	5613	Hs.390788	NM_005044	ENSG00000183943	PRKX	PKX1	"protein kinase, X-linked"	protein-coding
chr3.195547545.-	chr3	195547545	195547546	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	8701	NM_018406	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr20.62572042.+	chr20	62572042	62572043	+	0	NA	TTS (NR_031735)	TTS (NR_031735)	855	NR_031735	100302137		NR_031735		MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	miscRNA
chr3.53225186.-	chr3	53225186	53225187	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29963	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr5.1770154.-	chr5	1770154	1770155	-	0	NA	Intergenic	L1MB5|LINE|L1	-29802	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chrX.86721009.+	chrX	86721009	86721010	+	0	NA	Intergenic	SVA_C|Other|Other	-51706	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr13.88664952.+	chr13	88664952	88664953	+	0	NA	Intergenic	AluSx1|SINE|Alu	340082	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr5.3244462.+	chr5	3244462	3244463	+	0	NA	Intergenic	AluY|SINE|Alu	291746	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr2.213546674.-	chr2	213546674	213546675	-	0	NA	Intergenic	AluSc8|SINE|Alu	143322	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr9.16766036.-	chr9	16766036	16766037	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104750	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr1.32122096.+	chr1	32122096	32122097	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11258	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr14.64976449.-	chr14	64976449	64976450	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5157	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chr9.15428366.+	chr9	15428366	15428367	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5584	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr17.79608961.-	chr17	79608961	79608962	-	0	NA	promoter-TSS (NM_031945)	promoter-TSS (NM_031945)	388	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr8.43404147.+	chr8	43404147	43404148	+	0	NA	Intergenic	GSATX|Satellite|centr	256562	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr11.66224299.+	chr11	66224299	66224300	+	0	NA	Intergenic	AluY|SINE|Alu	-9499	NM_001243135	246330	Hs.656875	NM_001098510	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
chr17.47363940.+	chr17	47363940	47363941	+	0	NA	Intergenic	AluSx|SINE|Alu	38335	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr10.71044918.+	chr10	71044918	71044919	+	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	15162	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr7.44622072.+	chr7	44622072	44622073	+	0	NA	promoter-TSS (NM_182547)	promoter-TSS (NM_182547)	-245	NM_182547	222068	Hs.715273	NM_182547		TMED4	ERS25|HNLF	transmembrane emp24 protein transport domain containing 4	protein-coding
chr9.132020863.-	chr9	132020863	132020864	-	0	NA	Intergenic	CpG	62432	NM_001012715	414318	Hs.449434	NM_001012715		C9orf106	bA65J3.5	chromosome 9 open reading frame 106	protein-coding
chr17.20588542.-	chr17	20588542	20588543	-	0	NA	Intergenic	SVA_D|Other|Other	27217	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr19.1390229.+	chr19	1390229	1390230	+	0	NA	"intron (NM_024407, intron 4 of 7)"	"intron (NM_024407, intron 4 of 7)"	6346	NM_024407	374291	Hs.211914	NM_024407		NDUFS7	CI-20|CI-20KD|MY017|PSST	"NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)"	protein-coding
chr3.160673508.+	chr3	160673508	160673509	+	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	149175	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr8.26541419.+	chr8	26541419	26541420	+	0	NA	Intergenic	SVA_A|Other|Other	105498	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chrX.54371311.+	chrX	54371311	54371312	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13127	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr12.8777858.-	chr12	8777858	8777859	-	0	NA	Intergenic	Intergenic	12416	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr5.2640234.-	chr5	2640234	2640235	-	0	NA	Intergenic	Intergenic	-111535	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr7.100436432.+	chr7	100436432	100436433	+	0	NA	Intergenic	LTR2|LTR|ERV1	-11289	NM_004444	2050	Hs.437008	NM_004444	ENSG00000196411	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
chr6.34857491.+	chr6	34857491	34857492	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	453	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr11.16587515.-	chr11	16587515	16587516	-	0	NA	Intergenic	AluY|SINE|Alu	89580	NM_033326	55553	Hs.368226	NM_001145811	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
chr9.6858735.+	chr9	6858735	6858736	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101094	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr2.123429980.-	chr2	123429980	123429981	-	0	NA	Intergenic	AluY|SINE|Alu	-916859	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr3.112807948.+	chr3	112807948	112807949	+	0	NA	Intergenic	AluYc|SINE|Alu	-69393	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr1.121484132.-	chr1	121484132	121484133	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-223222	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr6.114067444.+	chr6	114067444	114067445	+	0	NA	Intergenic	AluY|SINE|Alu	-111083	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr10.71993239.-	chr10	71993239	71993240	-	0	NA	promoter-TSS (NM_021129)	promoter-TSS (NM_021129)	49	NM_021129	5464	Hs.437403	NM_021129	ENSG00000180817	PPA1	IOPPP|PP|PP1|SID6-8061	pyrophosphatase (inorganic) 1	protein-coding
chr16.84670296.-	chr16	84670296	84670297	-	0	NA	Intergenic	AluY|SINE|Alu	11835	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr19.18180426.+	chr19	18180426	18180427	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17271	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr7.394789.+	chr7	394789	394790	+	0	NA	Intergenic	Intergenic	-24602	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr18.33543831.+	chr18	33543831	33543832	+	0	NA	Intergenic	AluY|SINE|Alu	-8757	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr18.23534136.+	chr18	23534136	23534137	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	136475	NM_001007559	6760	Hs.129261	NM_001007559	ENSG00000141380	SS18	SSXT|SYT	"synovial sarcoma translocation, chromosome 18"	protein-coding
chr20.3879971.+	chr20	3879971	3879972	+	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	9508	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr16.2161310.-	chr16	2161310	2161311	-	0	NA	"exon (NM_000296, exon 15 of 46)"	"exon (NM_000296, exon 15 of 46)"	21025	NR_030646	100188847		NR_030646		MIR1225	MIRN1225	microRNA 1225	miscRNA
chr7.1547722.-	chr7	1547722	1547723	-	0	NA	Intergenic	AluSq2|SINE|Alu	3704	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr6.2971736.-	chr6	2971736	2971737	-	0	NA	promoter-TSS (NM_001271822)	promoter-TSS (NM_001271822)	193	NM_001271822	5269	Hs.731506	NM_001195291	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	"serpin peptidase inhibitor, clade B (ovalbumin), member 6"	protein-coding
chr12.49524994.-	chr12	49524994	49524995	-	0	NA	"intron (NM_006082, intron 1 of 3)"	CpG	-310	NM_006082	10376	Hs.524390	NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	"tubulin, alpha 1b"	protein-coding
chr13.32980233.-	chr13	32980233	32980234	-	0	NA	"intron (NM_052818, intron 3 of 4)"	AluY|SINE|Alu	-22082	NM_052818	90634	Hs.732118	NM_001079691	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
chr22.46522759.-	chr22	46522759	46522760	-	0	NA	Intergenic	Intergenic	-13193	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr9.128918407.+	chr9	128918407	128918408	+	0	NA	Intergenic	Intergenic	-170716	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr2.119479921.+	chr2	119479921	119479922	+	0	NA	Intergenic	Intergenic	125838	NM_001426	2019	Hs.271977	NM_001426	ENSG00000163064	EN1	-	engrailed homeobox 1	protein-coding
chr17.65766233.+	chr17	65766233	65766234	+	0	NA	Intergenic	AluSg4|SINE|Alu	29447	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr16.81282914.-	chr16	81282914	81282915	-	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	-10618	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr15.42300415.-	chr15	42300415	42300416	-	0	NA	"intron (NM_001206670, intron 2 of 19)"	"intron (NM_001206670, intron 2 of 19)"	35660	NM_139265	30844	Hs.143703	NM_139265	ENSG00000103966	EHD4	PAST4	EH-domain containing 4	protein-coding
chr19.42788677.-	chr19	42788677	42788678	-	0	NA	promoter-TSS (NM_015125)	promoter-TSS (NM_015125)	140	NM_015125	23152	Hs.388236	NM_015125	ENSG00000079432	CIC	-	capicua transcriptional repressor	protein-coding
chr20.55247403.+	chr20	55247403	55247404	+	0	NA	Intergenic	AluSz6|SINE|Alu	43045	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr6.154970626.-	chr6	154970626	154970627	-	0	NA	Intergenic	AluY|SINE|Alu	83886	NM_014892	22828	Hs.591329	NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD-associated factor 8	protein-coding
chr9.77401549.+	chr9	77401549	77401550	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100714	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr14.55349981.-	chr14	55349981	55349982	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5070	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr5.14460438.-	chr5	14460438	14460439	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121453	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chrX.689426.-	chrX	689426	689427	-	0	NA	Intergenic	Intergenic	-104347	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr10.69822249.+	chr10	69822249	69822250	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12854	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr8.123899607.-	chr8	123899607	123899608	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105706	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr16.70148627.+	chr16	70148627	70148628	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1098	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr6.27775408.+	chr6	27775408	27775409	+	0	NA	promoter-TSS (NM_003509)	promoter-TSS (NM_003509)	301	NM_003519	8340	Hs.137594	NM_003519	ENSG00000185130	HIST1H2BL	H2B/c|H2BFC|dJ97D16.4	"histone cluster 1, H2bl"	protein-coding
chr9.7934887.-	chr9	7934887	7934888	-	0	NA	Intergenic	AluY|SINE|Alu	135088	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr2.236999660.-	chr2	236999660	236999661	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-76992	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr4.85886939.-	chr4	85886939	85886940	-	0	NA	"intron (NM_014991, intron 1 of 67)"	CpG	-605	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr6.2221778.-	chr6	2221778	2221779	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24090	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr3.156539432.+	chr3	156539432	156539433	+	0	NA	Intergenic	Intergenic	-4581	NR_038387	730091	Hs.659905	NR_038387	ENSG00000240875	LOC730091	-	uncharacterized LOC730091	miscRNA
chr20.33062704.+	chr20	33062704	33062705	+	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	8574	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr7.5570072.-	chr7	5570072	5570073	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-160	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr16.48419719.+	chr16	48419719	48419720	+	0	NA	promoter-TSS (NM_003031)	promoter-TSS (NM_003031)	-490	NM_003031	6477	Hs.706828	NM_001006610	ENSG00000196470	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
chr20.62566887.+	chr20	62566887	62566888	+	0	NA	"3' UTR (NM_025219, exon 5 of 5)"	"3' UTR (NM_025219, exon 5 of 5)"	6010	NR_031735	100302137		NR_031735		MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	miscRNA
chr3.32863289.-	chr3	32863289	32863290	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3779	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr22.43879347.+	chr22	43879347	43879348	+	0	NA	"intron (NM_001044370, intron 4 of 6)"	"intron (NM_001044370, intron 4 of 6)"	-32787	NR_046563	100874197	Hs.627997	NR_046563	ENSG00000223843	EFCAB6-AS1	-	EFCAB6 antisense RNA 1	miscRNA
chr9.137200968.+	chr9	137200968	137200969	+	0	NA	Intergenic	Intergenic	-17348	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr15.45256294.+	chr15	45256294	45256295	+	0	NA	"intron (NM_152448, intron 4 of 6)"	AluSc5|SINE|Alu	7394	NM_152448	145645	Hs.567701	NM_152448	ENSG00000167014	C15orf43	-	chromosome 15 open reading frame 43	protein-coding
chr20.43040167.-	chr20	43040167	43040168	-	0	NA	"intron (NM_178850, intron 3 of 7)"	"intron (NM_178850, intron 3 of 7)"	-3407	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	miscRNA
chr6.33500228.-	chr6	33500228	33500229	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47842	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chrX.133639192.+	chrX	133639192	133639193	+	0	NA	Intergenic	AluSx|SINE|Alu	35100	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr2.120775596.+	chr2	120775596	120775597	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4811	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr2.206971502.+	chr2	206971502	206971503	+	0	NA	Intergenic	AluY|SINE|Alu	9794	NR_033248	100329109	Hs.356055	NR_033248		GCSHP3	-	glycine cleavage system protein H (aminomethyl carrier) pseudogene 3	pseudo
chr22.34378903.-	chr22	34378903	34378904	-	0	NA	Intergenic	AluSx1|SINE|Alu	62487	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr11.67346413.-	chr11	67346413	67346414	-	0	NA	Intergenic	AluY|SINE|Alu	4653	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr10.71415427.+	chr10	71415427	71415428	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	25424	NM_145306	219738	Hs.522992	NM_145306	ENSG00000171224	C10orf35	-	chromosome 10 open reading frame 35	protein-coding
chr17.74449059.-	chr17	74449059	74449060	-	0	NA	promoter-TSS (NM_001166579)	promoter-TSS (NM_001166579)	-229	NM_022066	63893	Hs.16130	NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin-conjugating enzyme E2O	protein-coding
chr1.171351085.-	chr1	171351085	171351086	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-43050	NR_002719	7151	Hs.742633	NR_002719		TOP1P1	-	topoisomerase (DNA) I pseudogene 1	pseudo
chr18.7360808.+	chr18	7360808	7360809	+	0	NA	Intergenic	LTR12C|LTR|ERV1	129671	NM_001105581	339291	Hs.647588	NM_001105581	ENSG00000206422	LRRC30	-	leucine rich repeat containing 30	protein-coding
chr12.130648046.-	chr12	130648046	130648047	-	0	NA	"exon (NM_007197, exon 1 of 1)"	"exon (NM_007197, exon 1 of 1)"	-1042	NM_007197	11211	Hs.733275	NM_007197	ENSG00000111432	FZD10	CD350|FZ-10|Fz10|FzE7|hFz10	frizzled family receptor 10	protein-coding
chr22.49833027.+	chr22	49833027	49833028	+	0	NA	Intergenic	AluSx|SINE|Alu	218163	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr7.157451850.+	chr7	157451850	157451851	+	0	NA	"intron (NM_130842, intron 12 of 21)"	"intron (NM_130842, intron 12 of 21)"	-84736	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr9.36596637.-	chr9	36596637	36596638	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23778	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr13.50432092.+	chr13	50432092	50432093	+	0	NA	Intergenic	AluY|SINE|Alu	-32453	NR_003268	220429	Hs.448219	NR_003268	ENSG00000181358	CTAGE10P	-	"CTAGE family, member 10, pseudogene"	pseudo
chr2.113642153.-	chr2	113642153	113642154	-	0	NA	Intergenic	AluJb|SINE|Alu	28395	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr9.141038895.-	chr9	141038895	141038896	-	0	NA	Intergenic	Intergenic	5670	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chrX.118892878.+	chrX	118892878	118892879	+	0	NA	"exon (NM_001105576, exon 1 of 1)"	"exon (NM_001105576, exon 1 of 1)"	302	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr9.108007064.-	chr9	108007064	108007065	-	0	NA	"5' UTR (NM_080546, exon 1 of 16)"	"5' UTR (NM_080546, exon 1 of 16)"	-135	NM_080546	23446	Hs.573495	NM_022109		SLC44A1	CD92|CDW92|CHTL1|CTL1|RP11-287A8.1	"solute carrier family 44, member 1"	protein-coding
chr10.17622244.-	chr10	17622244	17622245	-	0	NA	Intergenic	AluY|SINE|Alu	-37129	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr21.15443501.-	chr21	15443501	15443502	-	0	NA	Intergenic	Intergenic	90736	NR_027270	391267	Hs.364456	NM_153750	ENSG00000215559	ANKRD20A11P	C21orf81	"ankyrin repeat domain 20 family, member A11, pseudogene"	pseudo
chr2.85554166.+	chr2	85554166	85554167	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1253	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr19.12238641.-	chr19	12238641	12238642	-	0	NA	Intergenic	AluY|SINE|Alu	-12581	NM_001203250	7568	Hs.512823	NM_001203250	ENSG00000132010	ZNF20	KOX13	zinc finger protein 20	protein-coding
chr8.99151363.+	chr8	99151363	99151364	+	0	NA	"intron (NM_001145860, intron 9 of 15)"	AluSx1|SINE|Alu	21295	NM_015029	10940	Hs.252828	NM_001145860	ENSG00000104356	POP1	-	"processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)"	protein-coding
chr12.112426314.-	chr12	112426314	112426315	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24709	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr7.95234858.-	chr7	95234858	95234859	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8933	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr6.34217042.-	chr6	34217042	34217043	-	0	NA	promoter-TSS (NM_178508)	promoter-TSS (NM_178508)	138	NM_001008704	221491	Hs.381300	NM_001008703	ENSG00000186577	C6orf1	LBH	chromosome 6 open reading frame 1	protein-coding
chr18.63211096.-	chr18	63211096	63211097	-	0	NA	Intergenic	AluY|SINE|Alu	206392	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr4.3573880.-	chr4	3573880	3573881	-	0	NA	Intergenic	Intergenic	4716	NR_040045	285492	Hs.145563	NM_173661		FLJ35424	-	uncharacterized FLJ35424	miscRNA
chr16.88110296.-	chr16	88110296	88110297	-	0	NA	"3' UTR (NM_001173543, exon 14 of 14)"	"3' UTR (NM_001173543, exon 14 of 14)"	-106672	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chrX.39680408.+	chrX	39680408	39680409	+	0	NA	Intergenic	CpG	276311	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr6.21897100.-	chr6	21897100	21897101	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230425	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr2.239755889.+	chr2	239755889	239755890	+	0	NA	promoter-TSS (NM_001271893)	promoter-TSS (NM_001271893)	-784	NM_057179	117581	Hs.422585	NM_001271893	ENSG00000233608	TWIST2	DERMO1|FFDD3|SETLSS|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding
chr17.3599624.+	chr17	3599624	3599625	+	0	NA	promoter-TSS (NM_175080)	promoter-TSS (NM_175080)	74	NM_001204520	5026	Hs.731607	NM_001204519	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	"purinergic receptor P2X, ligand-gated ion channel, 5"	protein-coding
chr11.17160921.-	chr11	17160921	17160922	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30433	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr2.221058175.-	chr2	221058175	221058176	-	0	NA	Intergenic	MER52A|LTR|ERV1	286889	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr4.8629335.+	chr4	8629335	8629336	+	0	NA	Intergenic	AluSx1|SINE|Alu	34948	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chrX.53527482.-	chrX	53527482	53527483	-	0	NA	Intergenic	AluJb|SINE|Alu	-55820	NR_029513	407054		NR_029513		MIR98	MIRN98|hsa-mir-98|miR-98	microRNA 98	miscRNA
chr20.62278652.+	chr20	62278652	62278653	+	0	NA	"intron (NM_015894, intron 1 of 4)"	AluSx1|SINE|Alu	5467	NM_001276310	50861	Hs.639609	NM_001276310	ENSG00000197457	STMN3	SCLIP	stathmin-like 3	protein-coding
chr20.62108096.+	chr20	62108096	62108097	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4103	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr2.107084291.+	chr2	107084291	107084292	+	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	510	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chr19.45406768.-	chr19	45406768	45406769	-	0	NA	"3' UTR (NM_001128916, exon 10 of 10)"	"3' UTR (NM_001128916, exon 10 of 10)"	2271	NM_000041	348	Hs.654439	NM_000041	ENSG00000130203	APOE	AD2|LDLCQ5|LPG	apolipoprotein E	protein-coding
chr1.65532953.+	chr1	65532953	65532954	+	0	NA	Intergenic	CpG	-8762	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr19.39810757.-	chr19	39810757	39810758	-	0	NA	Intergenic	Intergenic	4781	NM_020862	57622	Hs.97860	NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
chr1.161064086.+	chr1	161064086	161064087	+	0	NA	Intergenic	AluSc|SINE|Alu	-4065	NR_033386	126823	Hs.507290	NM_001007256	ENSG00000162755	KLHDC9	KARCA1	kelch domain containing 9	protein-coding
chr2.204121217.-	chr2	204121217	204121218	-	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	-18053	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr16.631898.-	chr16	631898	631899	-	0	NA	"intron (NM_148920, intron 9 of 9)"	AluSq2|SINE|Alu	7459	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr17.79344049.+	chr17	79344049	79344050	+	0	NA	Intergenic	AluSx|SINE|Alu	15111	NM_001272086	100130370	Hs.651390	XM_001714096		LOC100130370	-	uncharacterized LOC100130370	protein-coding
chr22.46522763.+	chr22	46522763	46522764	+	0	NA	Intergenic	Intergenic	13197	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr10.104255207.+	chr10	104255207	104255208	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7305	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr2.70416463.+	chr2	70416463	70416464	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	1688	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr5.40801246.-	chr5	40801246	40801247	-	0	NA	Intergenic	SVA_E|Other|Other	2949	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr7.91257039.+	chr7	91257039	91257040	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252977	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr4.83439462.+	chr4	83439462	83439463	+	0	NA	"intron (NM_001080506, intron 1 of 7)"	AluSx1|SINE|Alu	43664	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	-	transmembrane protein 150C	protein-coding
chr11.62554809.+	chr11	62554809	62554810	+	0	NA	promoter-TSS (NM_199337)	promoter-TSS (NM_199337)	-65	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr5.3188286.-	chr5	3188286	3188287	-	0	NA	Intergenic	CpG	-347922	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr16.85512907.-	chr16	85512907	85512908	-	0	NA	Intergenic	AluY|SINE|Alu	132122	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr9.131638996.+	chr9	131638996	131638997	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluY|SINE|Alu	5358	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr4.1721017.+	chr4	1721017	1721018	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	2067	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr6.17988293.-	chr6	17988293	17988294	-	0	NA	promoter-TSS (NM_001105567)	promoter-TSS (NM_001105567)	439	NM_001243423	63971	Hs.94499	NM_001105566	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
chr7.5570091.-	chr7	5570091	5570092	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-141	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr1.199643515.-	chr1	199643515	199643516	-	0	NA	Intergenic	AluY|SINE|Alu	353215	NM_003822	2494	Hs.33446	NM_001276464	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	"nuclear receptor subfamily 5, group A, member 2"	protein-coding
chr9.38069461.-	chr9	38069461	38069462	-	0	NA	promoter-TSS (NM_003028)	promoter-TSS (NM_003028)	251	NM_003028	6461	Hs.521482	NM_003028		SHB	RP11-3J10.8|bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
chr1.218791906.+	chr1	218791906	218791907	+	0	NA	Intergenic	AluSx|SINE|Alu	-272886	NR_046268	728463	Hs.568469	NR_046268	ENSG00000232480	LOC728463	-	uncharacterized LOC728463	miscRNA
chrX.70493590.+	chrX	70493590	70493591	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9452	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr4.101117842.+	chr4	101117842	101117843	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6187	NM_145244	115265	Hs.480378	NM_145244	ENSG00000145358	DDIT4L	REDD2|Rtp801L	DNA-damage-inducible transcript 4-like	protein-coding
chr7.5355976.-	chr7	5355976	5355977	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33415	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr12.100804219.+	chr12	100804219	100804220	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53362	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr5.87348568.-	chr5	87348568	87348569	-	0	NA	Intergenic	L1PA2|LINE|L1	-216097	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr7.532215.+	chr7	532215	532216	+	0	NA	Intergenic	Intergenic	27266	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr2.61307003.-	chr2	61307003	61307004	-	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	-13640	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr14.102954874.+	chr14	102954874	102954875	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21254	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr7.150812757.-	chr7	150812757	150812758	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28931	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chrX.32910758.+	chrX	32910758	32910759	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127559	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr12.112161128.+	chr12	112161128	112161129	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37271	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chrX.117629913.+	chrX	117629913	117629914	+	0	NA	promoter-TSS (NM_144658)	promoter-TSS (NM_144658)	41	NM_144658	139818	Hs.368203	NM_144658	ENSG00000147251	DOCK11	ACG|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
chrX.40029662.+	chrX	40029662	40029663	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	6920	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr20.62657592.+	chr20	62657592	62657593	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8105	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr16.1845103.+	chr16	1845103	1845104	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-194	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.5570068.-	chr7	5570068	5570069	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-164	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr5.1667772.+	chr5	1667772	1667773	+	0	NA	Intergenic	CpG	-33652	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
chr11.77200944.-	chr11	77200944	77200945	-	0	NA	Intergenic	SVA_D|Other|Other	15836	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr18.43723425.+	chr18	43723425	43723426	+	0	NA	Intergenic	AluY|SINE|Alu	-30563	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chrY.25505289.+	chrY	25505289	25505290	+	0	NA	Intergenic	AluYa5|SINE|Alu	139685	NM_001005786	57055	Hs.592257	NM_001005785	ENSG00000205944	DAZ2	pDP1678	deleted in azoospermia 2	protein-coding
chr8.67454338.-	chr8	67454338	67454339	-	0	NA	Intergenic	Intergenic	-48847	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr20.1317824.-	chr20	1317824	1317825	-	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	7945	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr18.19632297.+	chr18	19632297	19632298	+	0	NA	Intergenic	AluSg4|SINE|Alu	-117107	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr7.157072975.+	chr7	157072975	157072976	+	0	NA	Intergenic	Intergenic	-56735	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr8.141276705.+	chr8	141276705	141276706	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191156	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr17.73439499.-	chr17	73439499	73439500	-	0	NA	Intergenic	AluSg4|SINE|Alu	13165	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr14.93549097.+	chr14	93549097	93549098	+	0	NA	"intron (NM_014216, intron 2 of 10)"	"intron (NM_014216, intron 2 of 10)"	15300	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	miscRNA
chr19.45524628.-	chr19	45524628	45524629	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17670	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr6.163752511.-	chr6	163752511	163752512	-	0	NA	Intergenic	Intergenic	7006	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr16.12163788.+	chr16	12163788	12163789	+	0	NA	"intron (NM_032167, intron 10 of 20)"	AluYc|SINE|Alu	93186	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr8.11312307.+	chr8	11312307	11312308	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11969	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr2.131551968.-	chr2	131551968	131551969	-	0	NA	Intergenic	AluY|SINE|Alu	-38104	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr6.149498811.-	chr6	149498811	149498812	-	0	NA	Intergenic	AluY|SINE|Alu	140625	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr4.109524414.-	chr4	109524414	109524415	-	0	NA	"intron (NR_026968, intron 1 of 3)"	AluSx1|SINE|Alu	-17199	NR_026968	285456	Hs.683863	NM_182591	ENSG00000234492	RPL34-AS1	-	RPL34 antisense RNA 1 (head to head)	miscRNA
chr8.143019608.-	chr8	143019608	143019609	-	0	NA	Intergenic	Intergenic	238092	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr3.173023558.-	chr3	173023558	173023559	-	0	NA	Intergenic	AluYc|SINE|Alu	92686	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr5.19804197.+	chr5	19804197	19804198	+	0	NA	"intron (NM_001167667, intron 3 of 12)"	AluY|SINE|Alu	184156	NM_004934	1016	Hs.317632	NM_001167667	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	"cadherin 18, type 2"	protein-coding
chr7.95234873.-	chr7	95234873	95234874	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8948	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr4.1400183.+	chr4	1400183	1400184	+	0	NA	Intergenic	CpG	14843	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr19.40696446.+	chr19	40696446	40696447	+	0	NA	Intergenic	AluSx|SINE|Alu	-1205	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr5.65936249.+	chr5	65936249	65936250	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44073	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr22.44810303.-	chr22	44810303	44810304	-	0	NA	Intergenic	AluSx1|SINE|Alu	-83702	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr16.631906.+	chr16	631906	631907	+	0	NA	"intron (NM_148920, intron 9 of 9)"	AluSq2|SINE|Alu	-7451	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr11.73486275.+	chr11	73486275	73486276	+	0	NA	Intergenic	SVA_C|Other|Other	-12642	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr10.123828868.-	chr10	123828868	123828869	-	0	NA	"intron (NM_206861, intron 3 of 19)"	AluY|SINE|Alu	-80179	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr21.25155439.+	chr21	25155439	25155440	+	0	NA	Intergenic	AluY|SINE|Alu	-398283	NR_040254	266917	Hs.145622	NR_040254	ENSG00000228592	D21S2088E	-	D21S2088E	miscRNA
chr5.1466245.+	chr5	1466245	1466246	+	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	-20702	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr2.183903179.+	chr2	183903179	183903180	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	50	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr15.37172895.-	chr15	37172895	37172896	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5839	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr4.3583812.+	chr4	3583812	3583813	+	0	NA	"intron (NR_040045, intron 1 of 2)"	"intron (NR_040045, intron 1 of 2)"	5216	NR_040045	285492	Hs.145563	NM_173661		FLJ35424	-	uncharacterized FLJ35424	miscRNA
chr8.144547112.-	chr8	144547112	144547113	-	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	34510	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr13.50177130.+	chr13	50177130	50177131	+	0	NA	Intergenic	AluY|SINE|Alu	-17411	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr19.5658846.+	chr19	5658846	5658847	+	0	NA	"intron (NR_037699, intron 12 of 18)"	AluY|SINE|Alu	-21930	NM_198533	374875	Hs.739286	NM_001267868	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid (11-beta) dehydrogenase 1-like	protein-coding
chr11.114967415.+	chr11	114967415	114967416	+	0	NA	Intergenic	AluSz|SINE|Alu	407826	NM_014333	23705	Hs.370510	NM_001098517	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
chr10.76620827.-	chr10	76620827	76620828	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34656	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr7.2932965.-	chr7	2932965	2932966	-	0	NA	Intergenic	AluSx1|SINE|Alu	49006	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr20.25293083.-	chr20	25293083	25293084	-	0	NA	"intron (NM_001042472, intron 6 of 12)"	SVA_C|Other|Other	-64377	NM_002862	5834	Hs.368157	NM_002862	ENSG00000100994	PYGB	GPBB	"phosphorylase, glycogen; brain"	protein-coding
chr9.134449861.-	chr9	134449861	134449862	-	0	NA	Intergenic	AluSx1|SINE|Alu	43199	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr4.83939818.-	chr4	83939818	83939819	-	0	NA	Intergenic	AluSq2|SINE|Alu	5778	NM_001115007	132660	Hs.96952	NM_001115007	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120	lin-54 homolog (C. elegans)	protein-coding
chr1.237293.-	chr1	237293	237294	-	0	NA	Intergenic	AluY|SINE|Alu	86599	NR_028325	100132062	Hs.732199	NR_028325		LOC100132062	-	uncharacterized LOC100132062	miscRNA
chr12.110821739.-	chr12	110821739	110821740	-	0	NA	"intron (NM_016238, intron 6 of 10)"	AluSg4|SINE|Alu	-19796	NM_001137664	51434	Hs.719935	NM_001137664	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
chr12.14720812.+	chr12	14720812	14720813	+	0	NA	promoter-TSS (NM_024829)	promoter-TSS (NM_024829)	-21	NM_024829	79887	Hs.131933	NM_024829		PLBD1	-	phospholipase B domain containing 1	protein-coding
chrM.15001.-	chrM	15001	15002	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr13.66584778.-	chr13	66584778	66584779	-	0	NA	Intergenic	AluY|SINE|Alu	814523	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr9.129229400.-	chr9	129229400	129229401	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56617	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr2.232202256.-	chr2	232202256	232202257	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25163	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr11.1122336.+	chr11	1122336	1122337	+	0	NA	Intergenic	Intergenic	47461	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr1.16267644.-	chr1	16267644	16267645	-	0	NA	TTS (NM_003443)	TTS (NM_003443)	-34983	NM_003443	7709	Hs.433764	NM_001242884	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
chr9.10974537.+	chr9	10974537	10974538	+	0	NA	Intergenic	L1PBa|LINE|L1	-361814	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr19.35760077.+	chr19	35760077	35760078	+	0	NA	"intron (NM_003367, intron 1 of 9)"	GC_rich|Low_complexity|Low_complexity	181	NM_207291	7392	Hs.454534	NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	"upstream transcription factor 2, c-fos interacting"	protein-coding
chr3.8721274.-	chr3	8721274	8721275	-	0	NA	Intergenic	Intergenic	27510	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr4.160748533.-	chr4	160748533	160748534	-	0	NA	Intergenic	AluSx1|SINE|Alu	-559535	NM_014247	9693	Hs.113912	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chr7.12595796.+	chr7	12595796	12595797	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14407	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chrX.70362626.+	chrX	70362626	70362627	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-2055	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr22.47447405.-	chr22	47447405	47447406	-	0	NA	"intron (NM_014346, intron 11 of 12)"	"intron (NM_014346, intron 11 of 12)"	-288887	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr2.234263690.+	chr2	234263690	234263691	+	0	NA	"intron (NM_152879, intron 1 of 29)"	"intron (NM_152879, intron 1 of 29)"	537	NM_152879	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	"diacylglycerol kinase, delta 130kDa"	protein-coding
chr7.5251986.+	chr7	5251986	5251987	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	"intron (NM_001033519, intron 2 of 11)"	-1914	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr4.45824716.-	chr4	45824716	45824717	-	0	NA	Intergenic	AluY|SINE|Alu	-301366	NM_173536	2565	Hs.375051	NM_173536	ENSG00000163285	GABRG1	-	"gamma-aminobutyric acid (GABA) A receptor, gamma 1"	protein-coding
chr4.1723298.-	chr4	1723298	1723299	-	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	-81	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr3.77641959.+	chr3	77641959	77641960	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494796	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr4.54103743.+	chr4	54103743	54103744	+	0	NA	"intron (NM_152540, intron 4 of 8)"	SVA_D|Other|Other	128499	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr19.19648225.+	chr19	19648225	19648226	+	0	NA	promoter-TSS (NM_153221)	promoter-TSS (NM_153221)	-849	NM_153221	148113	Hs.279574	NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
chr14.23706397.+	chr14	23706397	23706398	+	0	NA	Intergenic	AluSz|SINE|Alu	48912	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr22.47041976.+	chr22	47041976	47041977	+	0	NA	"intron (NM_015124, intron 2 of 17)"	"intron (NM_015124, intron 2 of 17)"	19318	NM_015124	23151	Hs.475150	NM_015124	ENSG00000075240	GRAMD4	DIP|dA59H18.1|dJ439F8.1	GRAM domain containing 4	protein-coding
chr1.95392786.-	chr1	95392786	95392787	-	0	NA	promoter-TSS (NR_033998)	promoter-TSS (NR_033998)	51	NM_001839	1266	Hs.483454	NM_001839	ENSG00000117519	CNN3	-	"calponin 3, acidic"	protein-coding
chr1.10854739.-	chr1	10854739	10854740	-	0	NA	"intron (NM_001079843, intron 1 of 20)"	CpG	-1994	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr17.27717848.+	chr17	27717848	27717849	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-95	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr17.18179023.+	chr17	18179023	18179024	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14599	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr12.56127541.+	chr12	56127541	56127542	+	0	NA	Intergenic	AluSg|SINE|Alu	-4084	NM_001257389	967	Hs.445570	NM_001257389	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
chr16.67194348.+	chr16	67194348	67194349	+	0	NA	promoter-TSS (NM_003789)	promoter-TSS (NM_003789)	457	NM_018378	55336	Hs.710714	NM_018378	ENSG00000135722	FBXL8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding
chr3.36494765.-	chr3	36494765	36494766	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72668	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr3.185552113.-	chr3	185552113	185552114	-	0	NA	Intergenic	AluYa5|SINE|Alu	9286	NM_001007225	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr11.68855362.+	chr11	68855362	68855363	+	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	39012	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr11.41260616.+	chr11	41260616	41260617	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220570	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr17.744654.+	chr17	744654	744655	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22697	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr16.89707685.+	chr16	89707685	89707686	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-16467	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr3.14349496.+	chr3	14349496	14349497	+	0	NA	Intergenic	Intergenic	-94610	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr1.10989808.+	chr1	10989808	10989809	+	0	NA	Intergenic	AluSq|SINE|Alu	52286	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chr6.18371801.-	chr6	18371801	18371802	-	0	NA	Intergenic	AluSx1|SINE|Alu	15780	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
chr17.74707090.+	chr17	74707090	74707091	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-34	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr17.8342610.-	chr17	8342610	8342611	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3440	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr18.13095631.+	chr18	13095631	13095632	+	0	NA	"exon (NM_032142, exon 35 of 45)"	"exon (NM_032142, exon 35 of 45)"	104270	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr22.51042039.+	chr22	51042039	51042040	+	0	NA	"intron (NM_012324, intron 3 of 11)"	"intron (NM_012324, intron 3 of 11)"	477	NM_016431	23542	Hs.558180	NM_012324	ENSG00000008735	MAPK8IP2	IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
chr16.67519969.-	chr16	67519969	67519970	-	0	NA	Intergenic	AluY|SINE|Alu	2253	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr7.153444641.+	chr7	153444641	153444642	+	0	NA	Intergenic	AluY|SINE|Alu	-139778	NM_001039350	1804	Hs.703229	NM_001039350	ENSG00000130226	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
chr12.66768086.+	chr12	66768086	66768087	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71751	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr22.51143895.+	chr22	51143895	51143896	+	0	NA	"intron (NM_033517, intron 16 of 21)"	"intron (NM_033517, intron 16 of 21)"	30825	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr17.65335496.+	chr17	65335496	65335497	+	0	NA	Intergenic	AluSx|SINE|Alu	27225	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr1.102295551.+	chr1	102295551	102295552	+	0	NA	"intron (NM_058170, intron 3 of 5)"	AluY|SINE|Alu	-42016	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	"DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5"	pseudo
chr2.43254188.+	chr2	43254188	43254189	+	0	NA	Intergenic	Intergenic	199557	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr7.158790498.+	chr7	158790498	158790499	+	0	NA	Intergenic	Intergenic	-10547	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr19.35532728.+	chr19	35532728	35532729	+	0	NA	"5' UTR (NM_182983, exon 2 of 13)"	"5' UTR (NM_182983, exon 2 of 13)"	1318	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr11.18743364.+	chr11	18743364	18743365	+	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	4413	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr1.147153132.+	chr1	147153132	147153133	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10498	NM_016361	51205	Hs.562154	NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	"acid phosphatase 6, lysophosphatidic"	protein-coding
chr1.182234387.+	chr1	182234387	182234388	+	0	NA	Intergenic	AluJb|SINE|Alu	126152	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr1.43081234.+	chr1	43081234	43081235	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42814	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr17.1053913.-	chr17	1053913	1053914	-	0	NA	"intron (NM_001159746, intron 1 of 22)"	"intron (NM_001159746, intron 1 of 22)"	-29253	NM_021962	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr1.224601863.-	chr1	224601863	224601864	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15850	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr16.30951006.+	chr16	30951006	30951007	+	0	NA	"intron (NR_073401, intron 7 of 10)"	AluY|SINE|Alu	-9399	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chrX.53123409.-	chrX	53123409	53123410	-	0	NA	Intergenic	CpG	-11867	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.158790529.-	chr7	158790529	158790530	-	0	NA	Intergenic	Intergenic	10516	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr2.47660317.+	chr2	47660317	47660318	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30111	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr7.1147474.+	chr7	1147474	1147475	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19751	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr15.22938737.+	chr15	22938737	22938738	+	0	NA	"intron (NM_014608, intron 9 of 30)"	AluY|SINE|Alu	-17018	NM_001033028	23191	Hs.26704	NM_001033028	ENSG00000068793	CYFIP1	P140SRA-1|SHYC|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
chr9.120249934.+	chr9	120249934	120249935	+	0	NA	Intergenic	Intergenic	-72617	NM_014010	23245	Hs.601562	NM_001184734	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
chr3.29051415.-	chr3	29051415	29051416	-	0	NA	Intergenic	AluSc8|SINE|Alu	271388	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr17.4708665.+	chr17	4708665	4708666	+	0	NA	Intergenic	AluSp|SINE|Alu	-1731	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr17.74538897.+	chr17	74538897	74538898	+	0	NA	"intron (NM_001077620, intron 3 of 4)"	"intron (NM_001077620, intron 3 of 4)"	2776	NM_001077620	768206	Hs.743588	NM_001077620		PRCD	RP36	progressive rod-cone degeneration	protein-coding
chr1.62954871.-	chr1	62954871	62954872	-	0	NA	"intron (NM_001272000, intron 40 of 48)"	AluY|SINE|Alu	-52488	NM_003368	7398	Hs.35086	NM_001017415	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
chr8.107670105.+	chr8	107670105	107670106	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	69	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr10.108610064.+	chr10	108610064	108610065	+	0	NA	"intron (NM_001013031, intron 2 of 26)"	L1PA2|LINE|L1	314402	NM_001206570	114815	Hs.591915	NM_001013031	ENSG00000108018	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chr7.158790518.+	chr7	158790518	158790519	+	0	NA	Intergenic	Intergenic	-10527	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr12.112620044.-	chr12	112620044	112620045	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56695	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr7.532559.-	chr7	532559	532560	-	0	NA	Intergenic	Intergenic	-26922	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr13.66584786.-	chr13	66584786	66584787	-	0	NA	Intergenic	AluY|SINE|Alu	814515	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr16.8974159.-	chr16	8974159	8974160	-	0	NA	Intergenic	Intergenic	11296	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr19.48836581.-	chr19	48836581	48836582	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7952	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr2.44294810.-	chr2	44294810	44294811	-	0	NA	Intergenic	SVA_D|Other|Other	71666	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr12.33592631.-	chr12	33592631	33592632	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-123	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr3.174240461.+	chr3	174240461	174240462	+	0	NA	Intergenic	AluY|SINE|Alu	-336650	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr11.915979.+	chr11	915979	915980	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-921	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr17.40536630.-	chr17	40536630	40536631	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3775	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr13.20532458.-	chr13	20532458	20532459	-	0	NA	promoter-TSS (NM_003453)	promoter-TSS (NM_003453)	352	NM_003453	7750	Hs.507433	NM_001190964	ENSG00000121741	ZMYM2	FIM|MYM|RAMP|SCLL|ZNF198	"zinc finger, MYM-type 2"	protein-coding
chr7.95182015.-	chr7	95182015	95182016	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-43910	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr7.66480056.-	chr7	66480056	66480057	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18264	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr21.16436833.-	chr21	16436833	16436834	-	0	NA	"intron (NM_003489, intron 1 of 3)"	CpG	-293	NM_003489	8204	Hs.155017	NM_003489	ENSG00000180530	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
chr4.170232003.-	chr4	170232003	170232004	-	0	NA	Intergenic	AluSq2|SINE|Alu	39754	NM_020870	57630	Hs.301804	NM_020870	ENSG00000154447	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding
chr9.89561559.-	chr9	89561559	89561560	-	0	NA	"exon (NM_002048, exon 1 of 1)"	"exon (NM_002048, exon 1 of 1)"	-545	NM_002048	2619	Hs.65029	NM_002048	ENSG00000180447	GAS1	-	growth arrest-specific 1	protein-coding
chr16.84754624.+	chr16	84754624	84754625	+	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	21069	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr6.170055334.-	chr6	170055334	170055335	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46825	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr14.105635368.+	chr14	105635368	105635369	+	0	NA	promoter-TSS (NM_002226)	promoter-TSS (NM_002226)	-207	NM_002226	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr19.11043312.-	chr19	11043312	11043313	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3888	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr21.42048865.+	chr21	42048865	42048866	+	0	NA	"intron (NM_001389, intron 3 of 32)"	"intron (NM_001389, intron 3 of 32)"	-46172	NR_046774	100874326	Hs.679746	NR_046774		DSCAM-IT1	zag4	DSCAM intronic transcript 1 (non-protein coding)	miscRNA
chr19.49061677.-	chr19	49061677	49061678	-	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	-6248	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr16.88258022.+	chr16	88258022	88258023	+	0	NA	Intergenic	Intergenic	-235857	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr13.114932080.+	chr13	114932080	114932081	+	0	NA	Intergenic	Intergenic	-33985	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr13.100934729.+	chr13	100934729	100934730	+	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	193460	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr4.188471112.-	chr4	188471112	188471113	-	0	NA	Intergenic	AluSg|SINE|Alu	44345	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr15.41613153.+	chr15	41613153	41613154	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11666	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr2.234763266.-	chr2	234763266	234763267	-	0	NA	promoter-TSS (NM_018410)	promoter-TSS (NM_018410)	54	NM_018410	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
chr17.74707146.+	chr17	74707146	74707147	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-90	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr9.108210393.+	chr9	108210393	108210394	+	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	68	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr5.175676714.+	chr5	175676714	175676715	+	0	NA	"intron (NM_198567, intron 1 of 8)"	AluY|SINE|Alu	11344	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr7.100273721.-	chr7	100273721	100273722	-	0	NA	"intron (NM_005273, intron 1 of 9)"	CpG	-2358	NM_005273	2783	Hs.185172	NM_005273	ENSG00000172354	GNB2	-	"guanine nucleotide binding protein (G protein), beta polypeptide 2"	protein-coding
chr16.632078.+	chr16	632078	632079	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7279	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr10.134216430.-	chr10	134216430	134216431	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5728	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr7.151812997.+	chr7	151812997	151812998	+	0	NA	"intron (NM_022087, intron 8 of 11)"	AluSp|SINE|Alu	90219	NM_022087	63917	Hs.647109	NM_022087	ENSG00000178234	GALNT11	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)	protein-coding
chr22.49833028.+	chr22	49833028	49833029	+	0	NA	Intergenic	AluSx|SINE|Alu	218162	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chrX.42145046.-	chrX	42145046	42145047	-	0	NA	Intergenic	SVA_D|Other|Other	362759	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chrX.19498827.-	chrX	19498827	19498828	-	0	NA	"intron (NM_001001671, intron 3 of 28)"	AluSx1|SINE|Alu	-34552	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr1.55583188.+	chr1	55583188	55583189	+	0	NA	"intron (NM_015306, intron 38 of 67)"	AluYb8|SINE|Alu	78039	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr13.112726524.+	chr13	112726524	112726525	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4611	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr19.47364562.-	chr19	47364562	47364563	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	10359	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr11.3224487.+	chr11	3224487	3224488	+	0	NA	Intergenic	Intergenic	-15075	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr21.46888551.+	chr21	46888551	46888552	+	0	NA	"exon (NM_130445, exon 3 of 43)"	"exon (NM_130445, exon 3 of 43)"	13127	NM_030582	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr1.226303153.-	chr1	226303153	226303154	-	0	NA	Intergenic	SVA_D|Other|Other	-52725	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	"H3 histone, family 3A, pseudogene 4"	pseudo
chr18.39709085.-	chr18	39709085	39709086	-	0	NA	Intergenic	AluY|SINE|Alu	57548	NR_046456	284260	Hs.652819	NR_046174	ENSG00000267586	LOC284260	-	uncharacterized LOC284260	miscRNA
chrX.32812444.-	chrX	32812444	32812445	-	0	NA	"intron (NM_000109, intron 7 of 78)"	AluY|SINE|Alu	-225873	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr6.64944904.-	chr6	64944904	64944905	-	0	NA	"intron (NM_001142800, intron 30 of 42)"	AluSx1|SINE|Alu	-588473	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
chr11.72160494.-	chr11	72160494	72160495	-	0	NA	Intergenic	AluY|SINE|Alu	14770	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr13.31735090.+	chr13	31735090	31735091	+	0	NA	"intron (NM_006644, intron 1 of 17)"	"intron (NM_006644, intron 1 of 17)"	1027	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr19.18416255.+	chr19	18416255	18416256	+	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	17746	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr17.34053867.+	chr17	34053867	34053868	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4812	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr7.128262284.-	chr7	128262284	128262285	-	0	NA	Intergenic	AluSz|SINE|Alu	19011	NR_024368	402483	Hs.744076	NM_001039682		FLJ45340	-	uncharacterized LOC402483	miscRNA
chr1.217697521.-	chr1	217697521	217697522	-	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	-106888	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr19.10041339.-	chr19	10041339	10041340	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5731	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr13.96329143.+	chr13	96329143	96329144	+	0	NA	promoter-TSS (NM_006260)	promoter-TSS (NM_006260)	-250	NM_006260	5611	Hs.59214	NM_006260		DNAJC3	ERdj6|HP58|P58|P58IPK|PRKRI	"DnaJ (Hsp40) homolog, subfamily C, member 3"	protein-coding
chr10.124464130.-	chr10	124464130	124464131	-	0	NA	Intergenic	Intergenic	4792	NM_001010912	399814	Hs.682151	NM_001010912	ENSG00000183559	C10orf120	bA318C4.1	chromosome 10 open reading frame 120	protein-coding
chr17.79427788.-	chr17	79427788	79427789	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9574	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr4.83365229.-	chr4	83365229	83365230	-	0	NA	"intron (NM_021204, intron 1 of 5)"	AluSz|SINE|Alu	-13503	NM_021204	58478	Hs.18442	NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145	enolase-phosphatase 1	protein-coding
chr20.11974568.+	chr20	11974568	11974569	+	0	NA	Intergenic	AluY|SINE|Alu	76003	NM_014962	22903	Hs.709366	NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
chr1.78230543.+	chr1	78230543	78230544	+	0	NA	Intergenic	AluSz|SINE|Alu	-4979	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr17.7232533.+	chr17	7232533	7232534	+	0	NA	"exon (NM_032442, exon 1 of 29)"	"exon (NM_032442, exon 1 of 29)"	105	NM_001005408	84461	Hs.654794	NM_001005408	ENSG00000215041	NEURL4	-	neuralized homolog 4 (Drosophila)	protein-coding
chr19.48836565.+	chr19	48836565	48836566	+	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	7936	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr1.6471004.+	chr1	6471004	6471005	+	0	NA	Intergenic	AluSz|SINE|Alu	8975	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr18.74225007.-	chr18	74225007	74225008	-	0	NA	Intergenic	AluY|SINE|Alu	15605	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LOC284276	-	uncharacterized LOC284276	miscRNA
chr3.82554679.-	chr3	82554679	82554680	-	0	NA	Intergenic	MER52A|LTR|ERV1	743729	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr6.33500232.-	chr6	33500232	33500233	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47838	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr7.32427414.-	chr7	32427414	32427415	-	0	NA	Intergenic	SVA_E|Other|Other	-70692	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
chr8.97190178.-	chr8	97190178	97190179	-	0	NA	Intergenic	AluY|SINE|Alu	17158	NM_001001557	392255	Hs.492277	NM_001001557	ENSG00000156466	GDF6	BMP13|CDMP2|KFM|KFS|KFS1|KFSL|MCOP4|MCOPCB6|SCDO4|SGM1	growth differentiation factor 6	protein-coding
chr5.114712446.+	chr5	114712446	114712447	+	0	NA	Intergenic	AluYc3|SINE|Alu	-79988	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr12.132353184.+	chr12	132353184	132353185	+	0	NA	Intergenic	Intergenic	-26095	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr10.46970903.+	chr10	46970903	46970904	+	0	NA	promoter-TSS (NM_031912)	promoter-TSS (NM_031912)	-302	NM_181519	83849	Hs.696346	NM_031912	ENSG00000204176	SYT15	CHR10SYT|sytXV	synaptotagmin XV	protein-coding
chr1.244999167.-	chr1	244999167	244999168	-	0	NA	"intron (NM_198076, intron 1 of 3)"	"intron (NM_198076, intron 1 of 3)"	-528	NM_198076	116228	Hs.411490	NM_198076	ENSG00000203667	COX20	FAM36A	COX20 Cox2 chaperone homolog (S. cerevisiae)	protein-coding
chr5.21484664.+	chr5	21484664	21484665	+	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	25075	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chrX.137770414.-	chrX	137770414	137770415	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20460	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr2.149395115.+	chr2	149395115	149395116	+	0	NA	Intergenic	AluY|SINE|Alu	-7445	NM_015630	26122	Hs.23270	NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chr13.82029678.-	chr13	82029678	82029679	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114592	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr10.35559784.-	chr10	35559784	35559785	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	-23831	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr11.33476393.-	chr11	33476393	33476394	-	0	NA	Intergenic	AluY|SINE|Alu	87484	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549-like	protein-coding
chr16.8974145.+	chr16	8974145	8974146	+	0	NA	Intergenic	Intergenic	-11282	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr10.135075407.+	chr10	135075407	135075408	+	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	-14283	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr12.38493598.+	chr12	38493598	38493599	+	0	NA	Intergenic	Intergenic	-216959	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr10.13354351.+	chr10	13354351	13354352	+	0	NA	Intergenic	AluSp|SINE|Alu	-12221	NM_006214	5264	Hs.498732	NM_001037537	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
chr18.59919494.-	chr18	59919494	59919495	-	0	NA	"intron (NM_020854, intron 11 of 28)"	AluSc|SINE|Alu	-64970	NM_020854	57614	Hs.465323	NM_020854	ENSG00000134444	KIAA1468	HsT3308|HsT885	KIAA1468	protein-coding
chr9.131293201.-	chr9	131293201	131293202	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21636	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr19.10408161.+	chr19	10408161	10408162	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7506	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr19.14156284.-	chr19	14156284	14156285	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13687	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr8.120878145.-	chr8	120878145	120878146	-	0	NA	Intergenic	AluSx1|SINE|Alu	7755	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr9.6608167.-	chr9	6608167	6608168	-	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	-37525	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr12.53235085.-	chr12	53235085	53235086	-	0	NA	"intron (NM_173352, intron 6 of 8)"	AluSc8|SINE|Alu	7008	NM_175834	338785	Hs.711471	NM_175834	ENSG00000185640	KRT79	K6L|KRT6L	keratin 79	protein-coding
chr2.101747970.+	chr2	101747970	101747971	+	0	NA	"intron (NM_001102426, intron 1 of 19)"	AluSp|SINE|Alu	19876	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	"TBC1 domain family, member 8 (with GRAM domain)"	protein-coding
chr15.54316968.+	chr15	54316968	54316969	+	0	NA	"intron (NM_001080534, intron 1 of 30)"	AluY|SINE|Alu	11867	NM_001080534	440279	Hs.657273	NM_001080534	ENSG00000137766	UNC13C	-	unc-13 homolog C (C. elegans)	protein-coding
chr20.42218529.+	chr20	42218529	42218530	+	0	NA	Intergenic	AluJb|SINE|Alu	-1050	NM_016004	51098	Hs.444332	NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1	intraflagellar transport 52 homolog (Chlamydomonas)	protein-coding
chr17.79427769.-	chr17	79427769	79427770	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9555	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr4.1723290.-	chr4	1723290	1723291	-	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	-73	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr19.49462896.+	chr19	49462896	49462897	+	0	NA	"intron (NM_138761, intron 4 of 5)"	AluSq2|SINE|Alu	4779	NM_138764	581	Hs.624291	NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2-associated X protein	protein-coding
chr22.50352382.-	chr22	50352382	50352383	-	0	NA	Intergenic	Intergenic	1761	NM_001001852	415116	Hs.530381	NM_001001852	ENSG00000198355	PIM3	pim-3	pim-3 oncogene	protein-coding
chr2.163473812.+	chr2	163473812	163473813	+	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	221445	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chr22.30781343.+	chr22	30781343	30781344	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1959	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr20.31990692.+	chr20	31990692	31990693	+	0	NA	Intergenic	AluJb|SINE|Alu	-1355	NM_016408	51654	Hs.435952	NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CDK5RAP1.3|CDK5RAP1.4|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
chr16.86528681.+	chr16	86528681	86528682	+	0	NA	"intron (NR_036444, intron 1 of 3)"	CpG	13785	NR_036444	400550	Hs.448825	NR_033925	ENSG00000268388	FENDRR	FOXF1-AS1|TCONS_00024240|lincFOXF1	FOXF1 adjacent non-coding developmental regulatory RNA	miscRNA
chr6.160182487.+	chr6	160182487	160182488	+	0	NA	promoter-TSS (NM_005891)	promoter-TSS (NM_005891)	-502	NM_005891	39	Hs.571037	NM_005891		ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
chr9.127099233.+	chr9	127099233	127099234	+	0	NA	"intron (NM_001166170, intron 7 of 9)"	AluSx|SINE|Alu	-16519	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	miscRNA
chr2.48784477.-	chr2	48784477	48784478	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11682	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr13.88877227.+	chr13	88877227	88877228	+	0	NA	Intergenic	AluY|SINE|Alu	-315857	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr1.212898483.-	chr1	212898483	212898484	-	0	NA	Intergenic	SVA_B|Other|Other	25156	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr19.23474447.+	chr19	23474447	23474448	+	0	NA	Intergenic	Intergenic	-41275	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr1.202927361.-	chr1	202927361	202927362	-	0	NA	"5' UTR (NM_015999, exon 1 of 8)"	"5' UTR (NM_015999, exon 1 of 8)"	-163	NM_015999	51094	Hs.713729	NM_001127687	ENSG00000159346	ADIPOR1	ACDCR1|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding
chr15.35059801.+	chr15	35059801	35059802	+	0	NA	Intergenic	AluYb9|SINE|Alu	-13019	NM_020660	57369	Hs.283816	NM_020660		GJD2	CX36|GJA9	"gap junction protein, delta 2, 36kDa"	protein-coding
chr16.67537.+	chr16	67537	67538	+	0	NA	Intergenic	Intergenic	5982	NR_045117	100287029	Hs.592089	NR_045117		DDX11L10	DDX11L1|DDX11P	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 10	pseudo
chr9.6559772.+	chr9	6559772	6559773	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85920	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr14.82601440.+	chr14	82601440	82601441	+	0	NA	Intergenic	AluY|SINE|Alu	-601235	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr2.122878787.+	chr2	122878787	122878788	+	0	NA	Intergenic	AluY|SINE|Alu	365666	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr2.95885011.+	chr2	95885011	95885012	+	0	NA	Intergenic	AluY|SINE|Alu	53828	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr12.75694193.+	chr12	75694193	75694194	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29643	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr1.153961815.-	chr1	153961815	153961816	-	0	NA	Intergenic	AluY|SINE|Alu	1424	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr15.93393113.+	chr15	93393113	93393114	+	0	NA	Intergenic	AluSx3|SINE|Alu	-32960	NR_037600	100507217	Hs.622504	NR_037600		LOC100507217	-	uncharacterized LOC100507217	miscRNA
chr6.157732653.-	chr6	157732653	157732654	-	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	-12600	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr8.113145020.+	chr8	113145020	113145021	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-510702	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	miscRNA
chr4.188471153.-	chr4	188471153	188471154	-	0	NA	Intergenic	AluSg|SINE|Alu	44386	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr15.63229205.-	chr15	63229205	63229206	-	0	NA	Intergenic	AluSp|SINE|Alu	105633	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr15.73344624.+	chr15	73344624	73344625	+	0	NA	promoter-TSS (NM_001172624)	promoter-TSS (NM_001172624)	-201	NM_002499	4756	Hs.388613	NM_001172623	ENSG00000067141	NEO1	IGDCC2|NGN	neogenin 1	protein-coding
chr20.8656862.-	chr20	8656862	8656863	-	0	NA	"intron (NM_182734, intron 9 of 32)"	AluSx|SINE|Alu	392839	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	"phospholipase C, beta 4"	protein-coding
chr4.113182847.+	chr4	113182847	113182848	+	0	NA	"intron (NM_001128426, intron 5 of 8)"	"intron (NM_001128426, intron 5 of 8)"	24212	NM_052864	92610	Hs.310640	NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF-interacting protein with forkhead-associated domain	protein-coding
chr16.69352916.-	chr16	69352916	69352917	-	0	NA	"intron (NM_013245, intron 5 of 10)"	"intron (NM_013245, intron 5 of 10)"	-7629	NM_013245	27183	Hs.128420	NM_013245	ENSG00000132612	VPS4A	SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A (S. cerevisiae)	protein-coding
chr9.131293202.-	chr9	131293202	131293203	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	"intron (NM_001003722, intron 9 of 15)"	21635	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr11.2213883.-	chr11	2213883	2213884	-	0	NA	Intergenic	Intergenic	-19590	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr8.26486343.+	chr8	26486343	26486344	+	0	NA	"intron (NM_001244604, intron 7 of 13)"	"intron (NM_001244604, intron 7 of 13)"	50422	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chrX.133328834.-	chrX	133328834	133328835	-	0	NA	Intergenic	AluSg|SINE|Alu	24526	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr6.141000400.+	chr6	141000400	141000401	+	0	NA	Intergenic	AluY|SINE|Alu	-4551	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr19.9311198.-	chr19	9311198	9311199	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14349	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr2.31691879.+	chr2	31691879	31691880	+	0	NA	Intergenic	AluY|SINE|Alu	-54268	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr9.120507388.-	chr9	120507388	120507389	-	0	NA	Intergenic	CpG	-40935	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr12.118663855.+	chr12	118663855	118663856	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89985	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr22.50959122.-	chr22	50959122	50959123	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4911	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr9.114342817.-	chr9	114342817	114342818	-	0	NA	"intron (NM_001146108, intron 6 of 9)"	AluSp|SINE|Alu	-18894	NM_012212	22949	Hs.584864	NM_001146108	ENSG00000106853	PTGR1	LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
chr1.6132092.+	chr1	6132092	6132093	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25918	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr9.130734373.+	chr9	130734373	130734374	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8439	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr5.154071089.+	chr5	154071089	154071090	+	0	NA	Intergenic	Intergenic	-21373	NM_015315	23367	Hs.292078	NM_033551	ENSG00000155506	LARP1	LARP	"La ribonucleoprotein domain family, member 1"	protein-coding
chr17.4708667.+	chr17	4708667	4708668	+	0	NA	Intergenic	AluSp|SINE|Alu	-1729	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr17.43255860.-	chr17	43255860	43255861	-	0	NA	Intergenic	AluY|SINE|Alu	-17596	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr2.239047348.-	chr2	239047348	239047349	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	15	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr14.102553411.-	chr14	102553411	102553412	-	0	NA	"5' UTR (NM_005348, exon 1 of 11)"	"5' UTR (NM_005348, exon 1 of 11)"	-101	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr16.76395014.-	chr16	76395014	76395015	-	0	NA	"intron (NM_138994, intron 3 of 22)"	AluY|SINE|Alu	-51279	NM_138994	85445	Hs.461389	NM_033401	ENSG00000152910	CNTNAP4	CASPR4	contactin associated protein-like 4	protein-coding
chr6.122006975.+	chr6	122006975	122006976	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250230	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr6.65337785.-	chr6	65337785	65337786	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673526	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr1.163468720.-	chr1	163468720	163468721	-	0	NA	Intergenic	SVA_A|Other|Other	-176997	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr20.31118123.+	chr20	31118123	31118124	+	0	NA	"intron (NM_001256798, intron 1 of 10)"	AluY|SINE|Alu	-46738	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr10.64976205.+	chr10	64976205	64976206	+	0	NA	"intron (NM_004241, intron 2 of 22)"	AluY|SINE|Alu	52777	NM_004241	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	RP11-10C13.2|TRIP8	jumonji domain containing 1C	protein-coding
chr17.1389868.+	chr17	1389868	1389869	+	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	-817	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr8.144359785.-	chr8	144359785	144359786	-	0	NA	TTS (NM_138465)	TTS (NM_138465)	-10178	NM_138465	2738	Hs.400533	NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
chrX.70493516.+	chrX	70493516	70493517	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9526	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr22.24237214.+	chr22	24237214	24237215	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	649	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr19.18416222.-	chr19	18416222	18416223	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17779	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr2.11411925.-	chr2	11411925	11411926	-	0	NA	"intron (NM_004850, intron 3 of 32)"	AluY|SINE|Alu	-72786	NM_004850	9475	Hs.681743	NM_004850		ROCK2	ROCK-II	"Rho-associated, coiled-coil containing protein kinase 2"	protein-coding
chrX.99100655.-	chrX	99100655	99100656	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94186	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr12.31575348.+	chr12	31575348	31575349	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96189	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr3.36494758.+	chr3	36494758	36494759	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72661	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr20.61425587.+	chr20	61425587	61425588	+	0	NA	Intergenic	Intergenic	-2218	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr7.5257583.-	chr7	5257583	5257584	-	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	-3683	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr17.4697372.+	chr17	4697372	4697373	+	0	NA	Intergenic	AluY|SINE|Alu	-2067	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr9.35728439.+	chr9	35728439	35728440	+	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	-3878	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr13.100899763.-	chr13	100899763	100899764	-	0	NA	"intron (NM_000282, intron 8 of 23)"	AluY|SINE|Alu	-158494	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr19.9311195.-	chr19	9311195	9311196	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14352	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr2.129057285.-	chr2	129057285	129057286	-	0	NA	"intron (NM_004807, intron 1 of 1)"	"intron (NM_004807, intron 1 of 1)"	-18886	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr14.51521353.+	chr14	51521353	51521354	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	41069	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr7.100963628.+	chr7	100963628	100963629	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1465	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chrX.134059677.+	chrX	134059677	134059678	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10380	NM_019556	56180	Hs.743299	NM_019556	ENSG00000101928	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
chr4.39399521.+	chr4	39399521	39399522	+	0	NA	Intergenic	AluSx|SINE|Alu	-8952	NM_175737	152831	Hs.90756	NM_175737	ENSG00000134962	KLB	BKL	klotho beta	protein-coding
chr11.45810272.-	chr11	45810272	45810273	-	0	NA	Intergenic	AluSz6|SINE|Alu	15351	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr12.129462876.-	chr12	129462876	129462877	-	0	NA	"intron (NM_144669, intron 7 of 7)"	"intron (NM_144669, intron 7 of 7)"	-124795	NM_144669	144423	Hs.655668	NM_144669	ENSG00000151948	GLT1D1	-	glycosyltransferase 1 domain containing 1	protein-coding
chr9.138663006.-	chr9	138663006	138663007	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	CpG-27303	-68975	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr7.1282626.+	chr7	1282626	1282627	+	0	NA	Intergenic	CpG-23802	9972	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chrM.796.+	chrM	796	797	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.8252949.-	chr17	8252949	8252950	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9761	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr15.41613134.-	chr15	41613134	41613135	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11685	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr6.164726224.-	chr6	164726224	164726225	-	0	NA	Intergenic	AluSq2|SINE|Alu	-890549	NM_006775	9444	Hs.510324	NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	"QKI, KH domain containing, RNA binding"	protein-coding
chr21.45243654.+	chr21	45243654	45243655	+	0	NA	Intergenic	Intergenic	-11206	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr7.592013.-	chr7	592013	592014	-	0	NA	"intron (NM_002735, intron 9 of 10)"	C-rich|Low_complexity|Low_complexity	-31985	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr14.75219156.-	chr14	75219156	75219157	-	0	NA	Intergenic	AluY|SINE|Alu	10913	NM_019589	56252	Hs.531111	NM_019589	ENSG00000119596	YLPM1	C14orf170|ZAP113|ZAP3	YLP motif containing 1	protein-coding
chr8.67618041.+	chr8	67618041	67618042	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6612	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr11.92637309.+	chr11	92637309	92637310	+	0	NA	Intergenic	AluY|SINE|Alu	-65480	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr16.4835222.+	chr16	4835222	4835223	+	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	-3176	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr5.79863383.-	chr5	79863383	79863384	-	0	NA	"intron (NM_001004441, intron 2 of 4)"	AluSq|SINE|Alu	-2921	NM_001004441	340120	Hs.519404	NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
chr1.25736537.+	chr1	25736537	25736538	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10826	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr16.16013174.-	chr16	16013174	16013175	-	0	NA	Intergenic	AluY|SINE|Alu	30260	NM_004996	4363	Hs.391464	NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	"ATP-binding cassette, sub-family C (CFTR/MRP), member 1"	protein-coding
chr17.37774506.-	chr17	37774506	37774507	-	0	NA	Intergenic	CpG	8671	NM_032192	84152	Hs.286192	NM_001242464	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	"protein phosphatase 1, regulatory (inhibitor) subunit 1B"	protein-coding
chr3.123619809.-	chr3	123619809	123619810	-	0	NA	Intergenic	AluSc8|SINE|Alu	16660	NM_053025	4638	Hs.477375	NM_053025	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
chr17.30414143.-	chr17	30414143	30414144	-	0	NA	Intergenic	FLAM_A|SINE|Alu	-46788	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
chr1.28703570.-	chr1	28703570	28703571	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7477	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr2.1563088.-	chr2	1563088	1563089	-	0	NA	Intergenic	Intergenic	-144908	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr16.31085182.+	chr16	31085182	31085183	+	0	NA	promoter-TSS (NM_014699)	promoter-TSS (NM_014699)	-359	NM_001172668	79759	Hs.102928	NM_001172668	ENSG00000167394	ZNF668	-	zinc finger protein 668	protein-coding
chr19.49964899.+	chr19	49964899	49964900	+	0	NA	"exon (NM_153329, exon 6 of 17)"	"exon (NM_153329, exon 6 of 17)"	8426	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chrX.142322513.-	chrX	142322513	142322514	-	0	NA	Intergenic	AluY|SINE|Alu	-208809	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	"SPANX family, member N4"	protein-coding
chr2.240402070.+	chr2	240402070	240402071	+	0	NA	Intergenic	Intergenic	-79427	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr5.176292809.+	chr5	176292809	176292810	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33524	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr3.195370291.-	chr3	195370291	195370292	-	0	NA	Intergenic	L2a|LINE|L2	14619	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2"	pseudo
chr8.1390520.+	chr8	1390520	1390521	+	0	NA	Intergenic	Intergenic	-59012	NM_001277161	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr19.18180383.-	chr19	18180383	18180384	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17314	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr1.16973970.-	chr1	16973970	16973971	-	0	NA	"non-coding (NR_027504, exon 6 of 14)"	"non-coding (NR_027504, exon 6 of 14)"	-1901	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr20.32056485.+	chr20	32056485	32056486	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21443	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr7.63583190.-	chr7	63583190	63583191	-	0	NA	Intergenic	AluSg|SINE|Alu	-77369	NM_001159522	442319	Hs.640774	NM_001159522	ENSG00000257482	ZNF727	-	zinc finger protein 727	protein-coding
chr3.109059733.+	chr3	109059733	109059734	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3314	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr2.79863146.-	chr2	79863146	79863147	-	0	NA	"intron (NM_001164883, intron 1 of 16)"	AluY|SINE|Alu	-13339	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr8.28351606.+	chr8	28351606	28351607	+	0	NA	promoter-TSS (NM_145866)	promoter-TSS (NM_145866)	-116	NM_017412	7976	Hs.734277	NM_017412	ENSG00000104290	FZD3	Fz-3	frizzled family receptor 3	protein-coding
chr1.78230568.-	chr1	78230568	78230569	-	0	NA	Intergenic	AluSz|SINE|Alu	5004	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr9.26341240.-	chr9	26341240	26341241	-	0	NA	Intergenic	AluSq2|SINE|Alu	-274567	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr1.38342263.+	chr1	38342263	38342264	+	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	-16971	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chrX.99100691.-	chrX	99100691	99100692	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94150	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr2.3331097.+	chr2	3331097	3331098	+	0	NA	"intron (NM_003310, intron 3 of 8)"	AluSz|SINE|Alu	50556	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr16.29422138.+	chr16	29422138	29422139	+	0	NA	Intergenic	AluSx|SINE|Alu	-38528	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr16.18801962.+	chr16	18801962	18801963	+	0	NA	promoter-TSS (NM_001019)	promoter-TSS (NM_001019)	-306	NM_001019	6210	Hs.370504	NM_001019	ENSG00000134419	RPS15A	S15a	ribosomal protein S15a	protein-coding
chr17.72203119.-	chr17	72203119	72203120	-	0	NA	"intron (NM_001035258, intron 3 of 4)"	AluY|SINE|Alu	-3324	NM_001035258	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr11.9503855.-	chr11	9503855	9503856	-	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	-21343	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr11.86869703.+	chr11	86869703	86869704	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	120817	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr21.43795257.+	chr21	43795257	43795258	+	0	NA	"intron (NM_001256317, intron 12 of 12)"	"intron (NM_001256317, intron 12 of 12)"	-8613	NM_003225	7031	Hs.162807	NM_003225	ENSG00000160182	TFF1	BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2	trefoil factor 1	protein-coding
chr5.179680172.+	chr5	179680172	179680173	+	0	NA	"intron (NM_139068, intron 5 of 11)"	LTR16B2|LTR|ERVL	38899	NM_139070	5601	Hs.484371	NM_001135044	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
chr18.11086401.-	chr18	11086401	11086402	-	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	-62360	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr21.31598732.-	chr21	31598732	31598733	-	0	NA	Intergenic	AluSx4|SINE|Alu	10263	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr16.58567193.+	chr16	58567193	58567194	+	0	NA	"intron (NM_001265612, intron 40 of 48)"	AluY|SINE|Alu	15344	NR_002978	677827	Hs.688592	NR_002978		SNORA46	ACA46	"small nucleolar RNA, H/ACA box 46"	snoRNA
chr15.55726761.-	chr15	55726761	55726762	-	0	NA	"intron (NR_037923, intron 7 of 15)"	BC200|scRNA|scRNA	-26038	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr13.31480348.+	chr13	31480348	31480349	+	0	NA	promoter-TSS (NM_032849)	promoter-TSS (NM_032849)	36	NM_032849	84935	Hs.708377	NM_032849	ENSG00000102802	MEDAG	AWMS3|C13orf33|MEDA-4|MEDA4|hAWMS3	mesenteric estrogen-dependent adipogenesis	protein-coding
chr10.104154504.-	chr10	104154504	104154505	-	0	NA	promoter-TSS (NM_001261403)	promoter-TSS (NM_001261403)	-167	NM_001077494	4791	Hs.73090	NM_001077494	ENSG00000077150	NFKB2	H2TF1|LYT-10|LYT10|NF-kB2|p105|p52	nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)	protein-coding
chr18.70912367.+	chr18	70912367	70912368	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19366	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr22.41521418.+	chr22	41521418	41521419	+	0	NA	"intron (NM_001429, intron 2 of 30)"	AluY|SINE|Alu	32804	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr12.4381911.-	chr12	4381911	4381912	-	0	NA	promoter-TSS (NM_001759)	promoter-TSS (NM_001759)	991	NM_001759	894	Hs.376071	NM_001759	ENSG00000118971	CCND2	KIAK0002	cyclin D2	protein-coding
chr2.70199640.+	chr2	70199640	70199641	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10243	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr6.13335731.-	chr6	13335731	13335732	-	0	NA	Intergenic	AluYa5|SINE|Alu	6944	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr1.18970440.-	chr1	18970440	18970441	-	0	NA	"intron (NM_001135254, intron 4 of 8)"	CpG	-12940	NM_002584	5081	Hs.113253	NM_001135254	ENSG00000009709	PAX7	HUP1|PAX7B|RMS2	paired box 7	protein-coding
chr3.42642377.+	chr3	42642377	42642378	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	195	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr2.43254182.+	chr2	43254182	43254183	+	0	NA	Intergenic	Intergenic	199563	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr2.97168916.-	chr2	97168916	97168917	-	0	NA	"intron (NR_026875, intron 1 of 3)"	"intron (NR_026875, intron 1 of 3)"	-4930	NR_026875	93082	Hs.149219	NR_026875	ENSG00000163121	NEURL3	LINCR	neuralized homolog 3 (Drosophila) pseudogene	pseudo
chr9.16748440.-	chr9	16748440	16748441	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122346	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr12.3093234.+	chr12	3093234	3093235	+	0	NA	"intron (NM_201443, intron 1 of 10)"	L2b|LINE|L2	24486	NM_201443	7004	Hs.94865	NM_003213	ENSG00000197905	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain family member 4	protein-coding
chr5.141558675.-	chr5	141558675	141558676	-	0	NA	Intergenic	AluSg|SINE|Alu	-70351	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr1.200950385.-	chr1	200950385	200950386	-	0	NA	"intron (NM_001252103, intron 27 of 33)"	"intron (NM_001252103, intron 27 of 33)"	-42443	NM_001252103	23046	Hs.169182	NM_001252100	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
chr8.144124781.-	chr8	144124781	144124782	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4102	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr3.66551138.+	chr3	66551138	66551139	+	0	NA	promoter-TSS (NM_015541)	promoter-TSS (NM_015541)	-293	NM_015541	26018	Hs.518055	NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding
chr17.12756058.+	chr17	12756058	12756059	+	0	NA	"intron (NM_014859, intron 1 of 20)"	AluY|SINE|Alu	63229	NM_014859	9912	Hs.499758	NM_014859	ENSG00000006740	ARHGAP44	NPC-A-10|RICH2	Rho GTPase activating protein 44	protein-coding
chr4.1872276.-	chr4	1872276	1872277	-	0	NA	promoter-TSS (NM_001042424)	promoter-TSS (NM_001042424)	847	NM_001042424	7468	Hs.113876	NM_001042424	ENSG00000109685	WHSC1	MMSET|NSD2|REIIBP|TRX5|WHS	Wolf-Hirschhorn syndrome candidate 1	protein-coding
chr11.92637319.+	chr11	92637319	92637320	+	0	NA	Intergenic	AluY|SINE|Alu	-65470	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr1.937272.-	chr1	937272	937273	-	0	NA	Intergenic	CpG-24	1720	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr15.75494182.+	chr15	75494182	75494183	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-39	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr6.137818308.-	chr6	137818308	137818309	-	0	NA	Intergenic	CpG	2777	NM_175747	167826	Hs.195398	NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
chr3.9398189.+	chr3	9398189	9398190	+	0	NA	Intergenic	AluY|SINE|Alu	-6528	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr13.19728179.+	chr13	19728179	19728180	+	0	NA	Intergenic	Intergenic	11057	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chrX.40029689.+	chrX	40029689	40029690	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	6893	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr21.45243638.-	chr21	45243638	45243639	-	0	NA	Intergenic	Intergenic	11190	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr2.53324866.-	chr2	53324866	53324867	-	0	NA	Intergenic	AluY|SINE|Alu	670063	NM_001008708	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	"ChaC, cation transport regulator homolog 2 (E. coli)"	protein-coding
chr9.140944717.+	chr9	140944717	140944718	+	0	NA	"intron (NM_000718, intron 24 of 45)"	"intron (NM_000718, intron 24 of 45)"	-99848	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr13.19518216.-	chr13	19518216	19518217	-	0	NA	Intergenic	GSATX|Satellite|centr	64183	NR_026852	348021	Hs.314114	NR_026852	ENSG00000232685	LINC00442	-	long intergenic non-protein coding RNA 442	miscRNA
chr3.51705360.+	chr3	51705360	51705361	+	0	NA	promoter-TSS (NM_001243725)	promoter-TSS (NM_001243725)	70	NM_001243725	51368	Hs.517864	NM_001129884	ENSG00000164081	TEX264	SIG11|ZSIG11	testis expressed 264	protein-coding
chrX.21676539.+	chrX	21676539	21676540	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-91	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr1.24513598.-	chr1	24513598	24513599	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-167	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr5.693688.-	chr5	693688	693689	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	178	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr15.50450644.+	chr15	50450644	50450645	+	0	NA	Intergenic	SVA_D|Other|Other	-23749	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	"solute carrier family 27 (fatty acid transporter), member 2"	protein-coding
chr6.18239289.-	chr6	18239289	18239290	-	0	NA	"intron (NM_001134709, intron 6 of 9)"	AluSp|SINE|Alu	-25510	NM_003472	7913	Hs.484813	NM_001134709	ENSG00000124795	DEK	D6S231E	DEK oncogene	protein-coding
chr19.16972545.-	chr19	16972545	16972546	-	0	NA	"intron (NM_015260, intron 8 of 19)"	AluSq2|SINE|Alu	27281	NM_003950	9002	Hs.137574	NM_003950		F2RL3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding
chr1.32122145.+	chr1	32122145	32122146	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11307	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr2.131100760.-	chr2	131100760	131100761	-	0	NA	promoter-TSS (NM_032357)	promoter-TSS (NM_032357)	-271	NM_033416	92856	Hs.91579	NM_033416	ENSG00000136718	IMP4	BXDC4	"IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)"	protein-coding
chr17.66597222.-	chr17	66597222	66597223	-	0	NA	promoter-TSS (NM_017565)	promoter-TSS (NM_017565)	127	NM_017565	54757	Hs.268874	NM_001243746		FAM20A	AIGFS|FP2747	"family with sequence similarity 20, member A"	protein-coding
chr11.62551861.-	chr11	62551861	62551862	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3013	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr11.100596581.-	chr11	100596581	100596582	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38174	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr17.73439477.-	chr17	73439477	73439478	-	0	NA	Intergenic	AluSg4|SINE|Alu	13187	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr5.134073879.+	chr5	134073879	134073880	+	0	NA	promoter-TSS (NM_001745)	promoter-TSS (NM_001745)	-291	NM_001745	819	Hs.529846	NM_001745	ENSG00000164615	CAMLG	CAML	calcium modulating ligand	protein-coding
chrY.13478068.+	chrY	13478068	13478069	+	0	NA	Intergenic	CpG	1055321	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr20.52362433.-	chr20	52362433	52362434	-	0	NA	Intergenic	AluSx|SINE|Alu	-129815	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr9.100747356.+	chr9	100747356	100747357	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1867	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr22.33497119.+	chr22	33497119	33497120	+	0	NA	Intergenic	AluSp|SINE|Alu	-42742	NM_001135774	8224	Hs.608750	NM_001135774	ENSG00000185666	SYN3	-	synapsin III	protein-coding
chr22.41633781.+	chr22	41633781	41633782	+	0	NA	"exon (NM_138481, exon 3 of 6)"	"exon (NM_138481, exon 3 of 6)"	3154	NM_138481	150356	Hs.344488	NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin-like	protein-coding
chr16.22675481.-	chr16	22675481	22675482	-	0	NA	Intergenic	AluJr|SINE|Alu	54122	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr6.42510301.+	chr6	42510301	42510302	+	0	NA	Intergenic	AluY|SINE|Alu	-21459	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chrX.53808258.+	chrX	53808258	53808259	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94561	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr18.77627517.-	chr18	77627517	77627518	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3849	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr2.176679073.-	chr2	176679073	176679074	-	0	NA	Intergenic	Intergenic	-187945	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|Ul|ulnaless	KIAA1715	protein-coding
chr22.38245559.+	chr22	38245559	38245560	+	0	NA	"intron (NM_016091, intron 1 of 12)"	CpG	180	NM_001242923	51386	Hs.446852	NM_001242923	ENSG00000100129	EIF3L	EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005	"eukaryotic translation initiation factor 3, subunit L"	protein-coding
chr13.103088637.-	chr13	103088637	103088638	-	0	NA	Intergenic	AluY|SINE|Alu	34513	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr6.71123665.+	chr6	71123665	71123666	+	0	NA	"intron (NM_020819, intron 1 of 20)"	CpG	558	NM_001105531	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr19.869351.-	chr19	869351	869352	-	0	NA	"intron (NM_005481, intron 13 of 15)"	"intron (NM_005481, intron 13 of 15)"	-9686	NM_001928	1675	Hs.155597	NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D (adipsin)	protein-coding
chr22.39040967.+	chr22	39040967	39040968	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11667	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr2.1563075.+	chr2	1563075	1563076	+	0	NA	Intergenic	Intergenic	144895	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr2.97656063.-	chr2	97656063	97656064	-	0	NA	Intergenic	AluY|SINE|Alu	3762	NM_001122646	51252	Hs.107922	NM_001122646	ENSG00000168754	FAM178B	-	"family with sequence similarity 178, member B"	protein-coding
chr15.37172894.+	chr15	37172894	37172895	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5840	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr4.92938324.+	chr4	92938324	92938325	+	0	NA	Intergenic	AluY|SINE|Alu	-287226	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr5.57859592.-	chr5	57859592	57859593	-	0	NA	Intergenic	SVA_A|Other|Other	19347	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr20.62029183.+	chr20	62029183	62029184	+	0	NA	Intergenic	Intergenic	-36435	NM_001256573	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr13.88877256.-	chr13	88877256	88877257	-	0	NA	Intergenic	AluY|SINE|Alu	315828	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr7.27284949.+	chr7	27284949	27284950	+	0	NA	"intron (NM_001989, intron 2 of 2)"	CpG-24164	2785	NM_001989	2128	Hs.369879	NM_001989		EVX1	-	even-skipped homeobox 1	protein-coding
chr16.1549235.+	chr16	1549235	1549236	+	0	NA	"exon (NM_016111, exon 6 of 21)"	"exon (NM_016111, exon 6 of 21)"	5883	NM_016111	9894	Hs.271044	NM_016111	ENSG00000100726	TELO2	CLK2|TEL2	"TEL2, telomere maintenance 2, homolog (S. cerevisiae)"	protein-coding
chr1.16175091.+	chr1	16175091	16175092	+	0	NA	promoter-TSS (NR_024279)	promoter-TSS (NR_024279)	-449	NR_024279	729614	Hs.119298	NR_024279	ENSG00000179743	FLJ37453	-	uncharacterized LOC729614	miscRNA
chr12.107112614.+	chr12	107112614	107112615	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34136	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr14.102101597.+	chr14	102101597	102101598	+	0	NA	Intergenic	Intergenic	73909	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr7.6454037.-	chr7	6454037	6454038	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	-33606	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr22.46522737.-	chr22	46522737	46522738	-	0	NA	Intergenic	Intergenic	-13171	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr12.49516406.-	chr12	49516406	49516407	-	0	NA	Intergenic	AluY|SINE|Alu	-8898	NM_006082	10376	Hs.524390	NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	"tubulin, alpha 1b"	protein-coding
chr19.21789904.-	chr19	21789904	21789905	-	0	NA	Intergenic	SVA_D|Other|Other	-101467	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr9.80898827.+	chr9	80898827	80898828	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13232	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr5.133968951.+	chr5	133968951	133968952	+	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	-418	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr4.3540634.-	chr4	3540634	3540635	-	0	NA	Intergenic	SVA_D|Other|Other	6410	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr9.133430101.+	chr9	133430101	133430102	+	0	NA	Intergenic	Intergenic	24780	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr5.2860361.-	chr5	2860361	2860362	-	0	NA	Intergenic	Intergenic	-108099	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr18.63641278.+	chr18	63641278	63641279	+	0	NA	Intergenic	AluSx3|SINE|Alu	223121	NM_004361	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr16.53227232.+	chr16	53227232	53227233	+	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	138287	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr4.186162046.-	chr4	186162046	186162047	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30762	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr9.861789.+	chr9	861789	861790	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20099	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr17.48046143.-	chr17	48046143	48046144	-	0	NA	promoter-TSS (NM_138281)	promoter-TSS (NM_138281)	419	NM_138281	1748	Hs.591167	NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
chrX.129231008.-	chrX	129231008	129231009	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13467	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr19.46185850.+	chr19	46185850	46185851	+	0	NA	TTS (NM_000164)	TTS (NM_000164)	-7584	NR_037512	100500845		NR_037512		MIR642B	-	microRNA 642b	miscRNA
chr19.59022760.+	chr19	59022760	59022761	+	0	NA	"exon (NM_012254, exon 1 of 10)"	"exon (NM_012254, exon 1 of 10)"	672	NM_012254	10998	Hs.292177	NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	"solute carrier family 27 (fatty acid transporter), member 5"	protein-coding
chr4.1358083.+	chr4	1358083	1358084	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16979	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr1.236252118.-	chr1	236252118	236252119	-	0	NA	Intergenic	Intergenic	23637	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr6.149075293.+	chr6	149075293	149075294	+	0	NA	"intron (NM_005715, intron 1 of 7)"	AluY|SINE|Alu	7022	NM_005715	10090	Hs.657370	NM_005715	ENSG00000111962	UST	2OST	uronyl-2-sulfotransferase	protein-coding
chr3.129048051.-	chr3	129048051	129048052	-	0	NA	Intergenic	AluY|SINE|Alu	12931	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr19.53979657.-	chr19	53979657	53979658	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8668	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr2.10205125.+	chr2	10205125	10205126	+	0	NA	"intron (NM_001037160, intron 2 of 2)"	AluSz|SINE|Alu	15413	NM_001037160	192668	Hs.720471	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
chr1.43460350.+	chr1	43460350	43460351	+	0	NA	Intergenic	AluSp|SINE|Alu	-35503	NM_006516	6513	Hs.473721	NM_006516		SLC2A1	DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED	"solute carrier family 2 (facilitated glucose transporter), member 1"	protein-coding
chr9.128842662.-	chr9	128842662	128842663	-	0	NA	Intergenic	LTR7|LTR|ERV1	246461	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr14.55349975.-	chr14	55349975	55349976	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5064	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr22.51001333.-	chr22	51001333	51001334	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	5	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr4.989226.+	chr4	989226	989227	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-2002	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr15.30396094.+	chr15	30396094	30396095	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	159	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr8.139075530.+	chr8	139075530	139075531	+	0	NA	Intergenic	AluSx|SINE|Alu	433535	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	"family with sequence similarity 135, member B"	protein-coding
chr14.101892566.-	chr14	101892566	101892567	-	0	NA	Intergenic	AluY|SINE|Alu	-129447	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr5.114712422.-	chr5	114712422	114712423	-	0	NA	Intergenic	AluYc3|SINE|Alu	79964	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr9.4741519.-	chr9	4741519	4741520	-	0	NA	promoter-TSS (NM_001199852)	promoter-TSS (NM_001199852)	210	NM_016282	50808	Hs.493362	NM_001199852		AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
chr1.54518657.-	chr1	54518657	54518658	-	0	NA	promoter-TSS (NM_153035)	promoter-TSS (NM_153035)	-454	NM_004872	9528	Hs.523262	NM_004872	ENSG00000116209	TMEM59	C1orf8|HSPC001	transmembrane protein 59	protein-coding
chr1.10446764.+	chr1	10446764	10446765	+	0	NA	Intergenic	AluY|SINE|Alu	-12321	NM_002631	5226	Hs.464071	NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
chr9.138065705.-	chr9	138065705	138065706	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7750	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr7.1084162.+	chr7	1084162	1084163	+	0	NA	"intron (NM_032350, intron 2 of 4)"	GC_rich|Low_complexity|Low_complexity	-12979	NM_138445	115330	Hs.718624	NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
chr12.132353187.+	chr12	132353187	132353188	+	0	NA	Intergenic	Intergenic	-26092	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr16.84670298.-	chr16	84670298	84670299	-	0	NA	Intergenic	AluY|SINE|Alu	11833	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr3.16159917.+	chr3	16159917	16159918	+	0	NA	Intergenic	AluSx|SINE|Alu	-56267	NM_054110	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNT13|GALNT7|GALNTL2|PIH5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chr1.11526621.+	chr1	11526621	11526622	+	0	NA	Intergenic	Intergenic	-12674	NM_020780	57540	Hs.202355	NM_020780	ENSG00000204624	PTCHD2	DISP3	patched domain containing 2	protein-coding
chrX.29649799.+	chrX	29649799	29649800	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-583876	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr6.158422589.-	chr6	158422589	158422590	-	0	NA	"intron (NR_046796, intron 1 of 2)"	AluSx3|SINE|Alu	-450	NR_046796	100874300	Hs.742238	NR_046796		SYNJ2-IT1	-	SYNJ2 intronic transcript 1 (non-protein coding)	miscRNA
chr8.145770884.+	chr8	145770884	145770885	+	0	NA	"exon (NM_025251, exon 7 of 13)"	"exon (NM_025251, exon 7 of 13)"	-16426	NM_001001795	414919	Hs.105685	NM_001001795		C8orf82	-	chromosome 8 open reading frame 82	protein-coding
chr9.83293408.+	chr9	83293408	83293409	+	0	NA	Intergenic	AluSc|SINE|Alu	1010188	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chrX.153095515.-	chrX	153095515	153095516	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-488	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr7.23550861.+	chr7	23550861	23550862	+	0	NA	"intron (NM_013293, intron 4 of 7)"	AluY|SINE|Alu	20795	NM_013293	29896	Hs.445652	NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog (Drosophila)	protein-coding
chr16.68889508.-	chr16	68889508	68889509	-	0	NA	"intron (NM_024562, intron 1 of 17)"	AluSx1|SINE|Alu	-11999	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
chr7.77452607.+	chr7	77452607	77452608	+	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	-16840	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr16.29422164.+	chr16	29422164	29422165	+	0	NA	Intergenic	AluSx|SINE|Alu	-38502	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chrX.53123320.+	chrX	53123320	53123321	+	0	NA	Intergenic	CpG	11778	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.242143607.-	chr2	242143607	242143608	-	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	-15683	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr12.95549208.+	chr12	95549208	95549209	+	0	NA	"intron (NM_018351, intron 3 of 20)"	AluSx|SINE|Alu	62032	NM_018351	55785	Hs.506381	NM_018351	ENSG00000180263	FGD6	ZFYVE24	"FYVE, RhoGEF and PH domain containing 6"	protein-coding
chr7.821300.-	chr7	821300	821301	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33894	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr3.34527447.-	chr3	34527447	34527448	-	0	NA	Intergenic	AluSz6|SINE|Alu	-687384	NM_001162429	10015	Hs.475896	NM_001162429	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
chr11.86519211.+	chr11	86519211	86519212	+	0	NA	"exon (NM_007173, exon 2 of 2)"	"exon (NM_007173, exon 2 of 2)"	7720	NM_007173	11098	Hs.25338	NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	"protease, serine, 23"	protein-coding
chr2.33935761.-	chr2	33935761	33935762	-	0	NA	Intergenic	AluSp|SINE|Alu	-17523	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr7.1001918.-	chr7	1001918	1001919	-	0	NA	Intergenic	Intergenic	7629	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr19.7123265.+	chr19	7123265	7123266	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53794	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr3.102974050.+	chr3	102974050	102974051	+	0	NA	Intergenic	SVA_D|Other|Other	820191	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr8.27695269.+	chr8	27695269	27695270	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	80	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr15.25904162.-	chr15	25904162	25904163	-	0	NA	Intergenic	AluSg|SINE|Alu	-189810	NR_039865	100616474		NR_039865		MIR4715	-	microRNA 4715	miscRNA
chrX.53125818.+	chrX	53125818	53125819	+	0	NA	Intergenic	AluJb|SINE|Alu	14276	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chrX.88129153.+	chrX	88129153	88129154	+	0	NA	Intergenic	AluY|SINE|Alu	126927	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr15.41443905.-	chr15	41443905	41443906	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35565	NM_017553	54617	Hs.292949	NM_017553	ENSG00000128908	INO80	INO80A|INOC1|hINO80	INO80 homolog (S. cerevisiae)	protein-coding
chr12.31575309.-	chr12	31575309	31575310	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96150	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr22.51001323.+	chr22	51001323	51001324	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	5	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr5.112263696.-	chr5	112263696	112263697	-	0	NA	Intergenic	AluY|SINE|Alu	5665	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr12.53472938.+	chr12	53472938	53472939	+	0	NA	"intron (NM_032840, intron 1 of 10)"	CpG	266	NM_032840	84926	Hs.343334	NM_032840	ENSG00000167778	SPRYD3	-	SPRY domain containing 3	protein-coding
chr19.10108041.-	chr19	10108041	10108042	-	0	NA	"intron (NM_015719, intron 11 of 66)"	"intron (NM_015719, intron 11 of 66)"	-13106	NM_015719	50509	Hs.235368	NM_015719	ENSG00000080573	COL5A3	-	"collagen, type V, alpha 3"	protein-coding
chr13.114932081.-	chr13	114932081	114932082	-	0	NA	Intergenic	Intergenic	33986	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr5.89746453.-	chr5	89746453	89746454	-	0	NA	Intergenic	AluSp|SINE|Alu	-24132	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr20.61471812.-	chr20	61471812	61471813	-	0	NA	TTS (NM_006602)	TTS (NM_006602)	4664	NM_080750	100132911	Hs.126248	NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1|dJ885L7.5	"DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1"	protein-coding
chr18.44499424.-	chr18	44499424	44499425	-	0	NA	Intergenic	AluSp|SINE|Alu	1929	NM_004671	9063	Hs.657844	NM_004671		PIAS2	ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4	"protein inhibitor of activated STAT, 2"	protein-coding
chr9.38829835.+	chr9	38829835	38829836	+	0	NA	Intergenic	AluY|SINE|Alu	208750	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr16.924567.+	chr16	924567	924568	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69124	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr4.1626798.+	chr4	1626798	1626799	+	0	NA	Intergenic	CpG	58920	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr13.82029588.-	chr13	82029588	82029589	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114502	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr5.179581178.-	chr5	179581178	179581179	-	0	NA	"intron (NM_175062, intron 1 of 13)"	"intron (NM_175062, intron 1 of 13)"	-54952	NM_175062	255426	Hs.190559	NM_001031799	ENSG00000146090	RASGEF1C	-	"RasGEF domain family, member 1C"	protein-coding
chr4.166248533.-	chr4	166248533	166248534	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	285	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr6.169342969.-	chr6	169342969	169342970	-	0	NA	Intergenic	Intergenic	-311168	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr1.38470698.+	chr1	38470698	38470699	+	0	NA	"intron (NM_004468, intron 1 of 5)"	CpG	489	NM_004468	2275	Hs.57687	NM_001243878	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
chr14.90248744.+	chr14	90248744	90248745	+	0	NA	Intergenic	AluSz6|SINE|Alu	-163250	NM_001085471	1112	Hs.434286	NM_001085471	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
chr13.20343685.+	chr13	20343685	20343686	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13474	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr2.62741048.+	chr2	62741048	62741049	+	0	NA	Intergenic	AluY|SINE|Alu	-7444	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr8.56758301.+	chr8	56758301	56758302	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34085	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr8.41559469.-	chr8	41559469	41559470	-	0	NA	"intron (NM_020476, intron 21 of 41)"	CpG	36665	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr14.55493819.+	chr14	55493819	55493820	+	0	NA	promoter-TSS (NM_001008396)	promoter-TSS (NM_001008396)	0	NM_007086	11169	Hs.385998	NM_001008396	ENSG00000198554	WDHD1	AND-1|CHTF4|CTF4	WD repeat and HMG-box DNA binding protein 1	protein-coding
chr4.83939799.-	chr4	83939799	83939800	-	0	NA	Intergenic	AluSq2|SINE|Alu	5759	NM_001115007	132660	Hs.96952	NM_001115007	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120	lin-54 homolog (C. elegans)	protein-coding
chr15.75165461.+	chr15	75165461	75165462	+	0	NA	"intron (NM_005697, intron 1 of 8)"	CpG	209	NM_005697	10066	Hs.458917	NM_005697		SCAMP2	-	secretory carrier membrane protein 2	protein-coding
chr5.179167568.+	chr5	179167568	179167569	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	7717	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr21.35774248.+	chr21	35774248	35774249	+	0	NA	Intergenic	AluSc8|SINE|Alu	26499	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr12.111714727.+	chr12	111714727	111714728	+	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	92198	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr3.49297087.+	chr3	49297087	49297088	+	0	NA	Intergenic	AluY|SINE|Alu	-14466	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	miscRNA
chr17.2721879.+	chr17	2721879	2721880	+	0	NA	"intron (NM_015085, intron 2 of 24)"	AluSz|SINE|Alu	22147	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr4.57302201.+	chr4	57302201	57302202	+	0	NA	promoter-TSS (NM_001079524)	promoter-TSS (NM_001079524)	-68	NM_001079525	10606	Hs.709570	NM_001079524	ENSG00000128050	PAICS	ADE2|ADE2H1|AIRC|PAIS	"phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase"	protein-coding
chr8.33217779.-	chr8	33217779	33217780	-	0	NA	Intergenic	AluY|SINE|Alu	-112885	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	"fucosyltransferase 10 (alpha (1,3) fucosyltransferase)"	protein-coding
chr22.38498793.+	chr22	38498793	38498794	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7883	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr13.99083503.+	chr13	99083503	99083504	+	0	NA	"exon (NM_005766, exon 18 of 27)"	"exon (NM_005766, exon 18 of 27)"	90838	NM_003576	8428	Hs.508514	NM_001032296	ENSG00000102572	STK24	MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
chr9.7934879.-	chr9	7934879	7934880	-	0	NA	Intergenic	AluY|SINE|Alu	135080	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr2.241550345.-	chr2	241550345	241550346	-	0	NA	"intron (NM_001195381, intron 2 of 5)"	AluSc8|SINE|Alu	-5520	NM_001195381	2859	Hs.112218	NM_001195381	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
chr13.35082269.-	chr13	35082269	35082270	-	0	NA	"intron (NR_047036, intron 2 of 2)"	AluY|SINE|Alu	-132553	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr10.12223701.-	chr10	12223701	12223702	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14260	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr9.88491241.-	chr9	88491241	88491242	-	0	NA	Intergenic	AluYc|SINE|Alu	64816	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr22.50987300.+	chr22	50987300	50987301	+	0	NA	"exon (NM_138433, exon 1 of 1)"	"exon (NM_138433, exon 1 of 1)"	838	NM_138433	113730	Hs.137007	NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
chr12.34191953.-	chr12	34191953	34191954	-	0	NA	Intergenic	AluSp|SINE|Alu	-16737	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr16.17617336.+	chr16	17617336	17617337	+	0	NA	Intergenic	AluSz|SINE|Alu	-52598	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr11.1904189.-	chr11	1904189	1904190	-	0	NA	"intron (NM_001013254, intron 3 of 10)"	"intron (NM_001013254, intron 3 of 10)"	-12035	NM_001013255	4046	Hs.56729	NM_001013253	ENSG00000130592	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
chr22.34378899.-	chr22	34378899	34378900	-	0	NA	Intergenic	AluSx1|SINE|Alu	62483	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr10.3161021.+	chr10	3161021	3161022	+	0	NA	"exon (NM_002627, exon 15 of 22)"	"exon (NM_002627, exon 15 of 22)"	-22772	NR_038284	100507034	Hs.665365	NR_038284	ENSG00000237399	PITRM1-AS1	-	PITRM1 antisense RNA 1	miscRNA
chr17.48350756.+	chr17	48350756	48350757	+	0	NA	"intron (NM_001168215, intron 1 of 5)"	CpG	-1032	NM_153229	162461	Hs.224630	NM_001168215	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
chr22.46522771.+	chr22	46522771	46522772	+	0	NA	Intergenic	Intergenic	13205	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr10.134216484.-	chr10	134216484	134216485	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5782	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr17.8342615.-	chr17	8342615	8342616	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3445	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr22.50354512.+	chr22	50354512	50354513	+	0	NA	"5' UTR (NM_001001852, exon 1 of 6)"	"5' UTR (NM_001001852, exon 1 of 6)"	369	NM_001001852	415116	Hs.530381	NM_001001852	ENSG00000198355	PIM3	pim-3	pim-3 oncogene	protein-coding
chr16.51168996.-	chr16	51168996	51168997	-	0	NA	TTS (NM_001127892)	TTS (NM_001127892)	-15512	NM_001127892	6299	Hs.135787	NM_001127892	ENSG00000103449	SALL1	HSAL1|Sal-1|TBS|ZNF794	sal-like 1 (Drosophila)	protein-coding
chr2.61294740.+	chr2	61294740	61294741	+	0	NA	"intron (NM_032506, intron 1 of 21)"	AluSc|SINE|Alu	1377	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr9.117009757.+	chr9	117009757	117009758	+	0	NA	"intron (NM_032888, intron 24 of 60)"	MIR3|SINE|MIR	38043	NR_030255	619556		NR_030255		MIR455	MIRN455|hsa-mir-455	microRNA 455	miscRNA
chr4.5892133.+	chr4	5892133	5892134	+	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	-1818	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr10.125611141.+	chr10	125611141	125611142	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40359	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr19.2984339.+	chr19	2984339	2984340	+	0	NA	"intron (NM_024760, intron 4 of 15)"	"intron (NM_024760, intron 4 of 15)"	6803	NM_001143986	79816	Hs.334507	NM_001143986	ENSG00000104953	TLE6	GRG6	"transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)"	protein-coding
chr14.19890139.+	chr14	19890139	19890140	+	0	NA	Intergenic	CpG	-4230	NR_073460	101101776	Hs.617315	NR_073460		LOC101101776	-	ribosome biogenesis protein BMS1 homolog pseudogene	pseudo
chr16.31996258.+	chr16	31996258	31996259	+	0	NA	Intergenic	AluY|SINE|Alu	111179	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr1.3379039.-	chr1	3379039	3379040	-	0	NA	"intron (NM_014448, intron 1 of 14)"	"intron (NM_014448, intron 1 of 14)"	-7892	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr17.4560133.-	chr17	4560133	4560134	-	0	NA	Intergenic	LTR12C|LTR|ERV1	15173	NM_001140	246	Hs.73809	NM_001140	ENSG00000161905	ALOX15	15-LOX-1|15LOX-1	arachidonate 15-lipoxygenase	protein-coding
chr16.50875269.-	chr16	50875269	50875270	-	0	NA	Intergenic	CpG	-99240	NM_001042412	1540	Hs.578973	NM_001042355	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2	cylindromatosis (turban tumor syndrome)	protein-coding
chr12.106606461.-	chr12	106606461	106606462	-	0	NA	Intergenic	L1PA7|LINE|L1	-35252	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chrX.40029607.-	chrX	40029607	40029608	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6975	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr11.64018877.-	chr11	64018877	64018878	-	0	NA	promoter-TSS (NM_000932)	promoter-TSS (NM_000932)	118	NM_000932	5331	Hs.523761	NM_000932		PLCB3	-	"phospholipase C, beta 3 (phosphatidylinositol-specific)"	protein-coding
chr16.1845164.+	chr16	1845164	1845165	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-255	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr14.44126151.-	chr14	44126151	44126152	-	0	NA	Intergenic	AluSc|SINE|Alu	-850348	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr5.168556368.+	chr5	168556368	168556369	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134330	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chr5.108146242.+	chr5	108146242	108146243	+	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	62719	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chr2.107084247.-	chr2	107084247	107084248	-	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	-554	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chr7.72395562.-	chr7	72395562	72395563	-	0	NA	"intron (NM_001257190, intron 4 of 15)"	CpG	-29740	NR_033323	260294	Hs.510927	NM_001039487	ENSG00000106133	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	"NOP2/Sun domain family, member 5 pseudogene 2"	pseudo
chr20.34266391.+	chr20	34266391	34266392	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13513	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr2.183903194.+	chr2	183903194	183903195	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	35	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr1.209280865.+	chr1	209280865	209280866	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-321303	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
chr7.150667513.+	chr7	150667513	150667514	+	0	NA	"intron (NM_000238, intron 2 of 14)"	"intron (NM_000238, intron 2 of 14)"	7889	NM_000238	3757	Hs.647099	NM_000238	ENSG00000055118	KCNH2	ERG1|HERG|HERG1|Kv11.1|LQT2|SQT1	"potassium voltage-gated channel, subfamily H (eag-related), member 2"	protein-coding
chr17.57884709.-	chr17	57884709	57884710	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33918	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr2.45326672.+	chr2	45326672	45326673	+	0	NA	Intergenic	AluSx1|SINE|Alu	-90130	NM_016932	10736	Hs.101937	NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
chr12.75694221.+	chr12	75694221	75694222	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29615	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr16.87910831.-	chr16	87910831	87910832	-	0	NA	Intergenic	AluY|SINE|Alu	7731	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr12.109637555.+	chr12	109637555	109637556	+	0	NA	"intron (NM_001093, intron 17 of 51)"	AluY|SINE|Alu	60353	NM_001093	32	Hs.234898	NM_001093	ENSG00000076555	ACACB	ACC2|ACCB|HACC275	acetyl-CoA carboxylase beta	protein-coding
chr9.133788062.-	chr9	133788062	133788063	-	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	18837	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr17.45897168.-	chr17	45897168	45897169	-	0	NA	"intron (NM_145798, intron 3 of 22)"	"intron (NM_145798, intron 3 of 22)"	-1979	NM_145798	114881	Hs.463320	NM_145798	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
chr14.53476777.+	chr14	53476777	53476778	+	0	NA	Intergenic	AluSx|SINE|Alu	-58962	NM_006832	10979	Hs.509343	NM_001134999	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
chr21.44478110.+	chr21	44478110	44478111	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17930	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr3.42642492.+	chr3	42642492	42642493	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	80	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr19.38755344.+	chr19	38755344	38755345	+	0	NA	"5' UTR (NM_021102, exon 1 of 7)"	"5' UTR (NM_021102, exon 1 of 7)"	246	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr14.60336424.-	chr14	60336424	60336425	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1133	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr14.101679053.-	chr14	101679053	101679054	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142805	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr6.167607671.-	chr6	167607671	167607672	-	0	NA	Intergenic	Intergenic	-23590	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr19.34074911.+	chr19	34074911	34074912	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-37950	NM_001127895	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr19.53979660.+	chr19	53979660	53979661	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8671	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr9.35116369.+	chr9	35116369	35116370	+	0	NA	promoter-TSS (NM_025182)	promoter-TSS (NM_025182)	-476	NM_025182	80256	Hs.301696	NM_025182	ENSG00000005238	FAM214B	KIAA1539|P1.11659_5|RP11-182N22.6|bA182N22.6	"family with sequence similarity 214, member B"	protein-coding
chr2.106682206.-	chr2	106682206	106682207	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-93	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr19.46000122.+	chr19	46000122	46000123	+	0	NA	"5' UTR (NM_005619, exon 1 of 11)"	"5' UTR (NM_005619, exon 1 of 11)"	191	NM_206900	6253	Hs.47517	NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
chr7.5257645.-	chr7	5257645	5257646	-	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	-3745	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr13.26145066.+	chr13	26145066	26145067	+	0	NA	"intron (NM_016529, intron 17 of 36)"	"intron (NM_016529, intron 17 of 36)"	198857	NM_016529	51761	Hs.444957	NM_016529		ATP8A2	ATP|ATPIB|IB|ML-1	"ATPase, aminophospholipid transporter, class I, type 8A, member 2"	protein-coding
chr3.14349488.+	chr3	14349488	14349489	+	0	NA	Intergenic	Intergenic	-94618	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr7.128141939.-	chr7	128141939	128141940	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25156	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr2.47661280.-	chr2	47661280	47661281	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31074	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr11.68855366.-	chr11	68855366	68855367	-	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	-39016	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr6.33500231.-	chr6	33500231	33500232	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47839	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr1.163468372.+	chr1	163468372	163468373	+	0	NA	Intergenic	SVA_A|Other|Other	176649	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr11.46730237.+	chr11	46730237	46730238	+	0	NA	Intergenic	AluSz|SINE|Alu	7593	NM_001184751	79797	Hs.656931	NM_001184751	ENSG00000175213	ZNF408	-	zinc finger protein 408	protein-coding
chr17.4926593.+	chr17	4926593	4926594	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12134	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chrX.39680353.-	chrX	39680353	39680354	-	0	NA	Intergenic	CpG	-276366	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.35418164.-	chr19	35418164	35418165	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-357	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr2.43253960.-	chr2	43253960	43253961	-	0	NA	Intergenic	Intergenic	-199785	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr19.37792683.-	chr19	37792683	37792684	-	0	NA	Intergenic	SST1|Satellite|centr	32771	NR_029390	284412	Hs.635932	NR_029390		LOC284412	-	uncharacterized LOC284412	miscRNA
chr21.47838760.-	chr21	47838760	47838761	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40102	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr2.47661299.+	chr2	47661299	47661300	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	31093	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr2.70199509.-	chr2	70199509	70199510	-	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	10112	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr17.47754939.-	chr17	47754939	47754940	-	0	NA	"intron (NM_001007226, intron 1 of 11)"	CpG	-586	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr7.66479990.-	chr7	66479990	66479991	-	0	NA	"intron (NM_018264, intron 5 of 15)"	"intron (NM_018264, intron 5 of 15)"	-18198	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr7.11871440.+	chr7	11871440	11871441	+	0	NA	"exon (NM_015204, exon 1 of 27)"	"exon (NM_015204, exon 1 of 27)"	384	NM_015204	221981	Hs.120855	NM_015204		THSD7A	-	"thrombospondin, type I, domain containing 7A"	protein-coding
chr22.49585349.+	chr22	49585349	49585350	+	0	NA	Intergenic	Intergenic	322767	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr6.152343839.+	chr6	152343839	152343840	+	0	NA	"intron (NM_001122742, intron 7 of 9)"	AluSp|SINE|Alu	215025	NM_000125	2099	Hs.208124	NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|Era|NR3A1	estrogen receptor 1	protein-coding
chr17.17584883.+	chr17	17584883	17584884	+	0	NA	promoter-TSS (NM_030665)	promoter-TSS (NM_030665)	96	NM_030665	10743	Hs.727059	NM_030665	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
chr9.16855694.-	chr9	16855694	16855695	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-15092	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr22.50726599.-	chr22	50726599	50726600	-	0	NA	"intron (NM_012401, intron 5 of 36)"	"intron (NM_012401, intron 5 of 36)"	17820	NM_002751	5600	Hs.57732	XM_003960822	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
chr10.135031514.+	chr10	135031514	135031515	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12264	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr8.98787936.-	chr8	98787936	98787937	-	0	NA	"5' UTR (NM_018407, exon 1 of 7)"	"5' UTR (NM_018407, exon 1 of 7)"	-127	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr19.54138366.-	chr19	54138366	54138367	-	0	NA	"intron (NM_001012728, intron 2 of 2)"	AluJb|SINE|Alu	-3056	NM_001012728	503834	Hs.579941	NM_001012728	ENSG00000204595	DPRX	-	divergent-paired related homeobox	protein-coding
chr11.16587519.-	chr11	16587519	16587520	-	0	NA	Intergenic	AluY|SINE|Alu	89584	NM_033326	55553	Hs.368226	NM_001145811	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
chr1.40953659.-	chr1	40953659	40953660	-	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	-10357	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr1.80177698.-	chr1	80177698	80177699	-	0	NA	Intergenic	AluSx|SINE|Alu	705203	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr7.158670985.+	chr7	158670985	158670986	+	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	21716	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr17.810101.+	chr17	810101	810102	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42750	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr7.1156330.+	chr7	1156330	1156331	+	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	21563	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chr12.105389760.-	chr12	105389760	105389761	-	0	NA	Intergenic	AluY|SINE|Alu	-9662	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr7.56109605.+	chr7	56109605	56109606	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9663	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr2.182756843.+	chr2	182756843	182756844	+	0	NA	"exon (NM_006751, exon 1 of 17)"	"exon (NM_006751, exon 1 of 17)"	371	NM_001130445	6744	Hs.196983	NM_001130445	ENSG00000138434	SSFA2	CS-1|CS1|KRAP|SPAG13	sperm specific antigen 2	protein-coding
chr22.41844553.+	chr22	41844553	41844554	+	0	NA	Intergenic	Intergenic	-1526	NM_016272	10766	Hs.743993	NM_016272	ENSG00000183864	TOB2	TOB4|TOBL|TROB2	"transducer of ERBB2, 2"	protein-coding
chr1.181058703.+	chr1	181058703	181058704	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1065	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr16.12223896.-	chr16	12223896	12223897	-	0	NA	"intron (NM_032167, intron 13 of 20)"	AluSc8|SINE|Alu	-153294	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr1.145075691.+	chr1	145075691	145075692	+	0	NA	"exon (NM_022359, exon 1 of 7)"	"exon (NM_022359, exon 1 of 7)"	495	NM_022359	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr8.80696433.+	chr8	80696433	80696434	+	0	NA	Intergenic	CpG	-16335	NM_012258	23462	Hs.234434	NM_001040708	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|OAF1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding
chr1.30574809.-	chr1	30574809	30574810	-	0	NA	Intergenic	Intergenic	616810	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	miscRNA
chr2.905948.+	chr2	905948	905949	+	0	NA	Intergenic	Intergenic	-40606	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr16.12997207.-	chr16	12997207	12997208	-	0	NA	"intron (NM_001145204, intron 1 of 4)"	CpG	-1730	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa homolog 9 (Xenopus laevis)	protein-coding
chr11.69189589.-	chr11	69189589	69189590	-	0	NA	Intergenic	Intergenic	-127967	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr8.144196748.-	chr8	144196748	144196749	-	0	NA	Intergenic	AluSp|SINE|Alu	-44709	NM_002347	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr2.179303695.+	chr2	179303695	179303696	+	0	NA	"intron (NM_003690, intron 6 of 7)"	AluY|SINE|Alu	11660	NM_001139518	8575	Hs.570274	NM_001139517	ENSG00000180228	PRKRA	DYT16|PACT|RAX	"protein kinase, interferon-inducible double stranded RNA dependent activator"	protein-coding
chr9.133788033.-	chr9	133788033	133788034	-	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	18808	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr1.1753930.+	chr1	1753930	1753931	+	0	NA	"intron (NM_002074, intron 3 of 11)"	AluY|SINE|Alu	-42422	NM_001198994	65220	Hs.733075	NM_001198993	ENSG00000008130	NADK	dJ283E3.1	NAD kinase	protein-coding
chr12.2384402.+	chr12	2384402	2384403	+	0	NA	"intron (NR_046769, intron 1 of 2)"	"intron (NR_046769, intron 1 of 2)"	5460	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	miscRNA
chr10.6622000.-	chr10	6622000	6622001	-	0	NA	promoter-TSS (NR_036502)	promoter-TSS (NR_036502)	-254	NM_006257	5588	Hs.498570	NM_001242413	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	"protein kinase C, theta"	protein-coding
chr5.178657994.+	chr5	178657994	178657995	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114437	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr16.22675578.+	chr16	22675578	22675579	+	0	NA	Intergenic	AluJr|SINE|Alu	-54025	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr4.92938360.+	chr4	92938360	92938361	+	0	NA	Intergenic	AluY|SINE|Alu	-287190	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr3.42642382.+	chr3	42642382	42642383	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	190	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr14.51521342.-	chr14	51521342	51521343	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41080	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr8.3825571.-	chr8	3825571	3825572	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026757	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr9.134340273.+	chr9	134340273	134340274	+	0	NA	"exon (NM_013318, exon 11 of 31)"	"exon (NM_013318, exon 11 of 31)"	-20779	NR_002914	26786		NR_002914		SNORD62A	RNU62|U62|U62A	"small nucleolar RNA, C/D box 62A"	snoRNA
chr3.126195072.-	chr3	126195072	126195073	-	0	NA	promoter-TSS (NM_025112)	promoter-TSS (NM_025112)	310	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr14.101679060.+	chr14	101679060	101679061	+	0	NA	Intergenic	AluSx1|SINE|Alu	142812	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr21.11129984.+	chr21	11129984	11129985	+	0	NA	Intergenic	AluSz6|SINE|Alu	-31047	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr5.3188273.+	chr5	3188273	3188274	+	0	NA	Intergenic	CpG	347935	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr7.5257641.-	chr7	5257641	5257642	-	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	-3741	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr8.141276709.+	chr8	141276709	141276710	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191152	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr3.122695636.-	chr3	122695636	122695637	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	655	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr5.87348563.-	chr5	87348563	87348564	-	0	NA	Intergenic	L1PA2|LINE|L1	-216102	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr7.25609217.-	chr7	25609217	25609218	-	0	NA	Intergenic	AluSz|SINE|Alu	-271413	NR_046486	100873753		NR_046486		RNU6-16	-	"RNA, U6 small nuclear 16"	snRNA
chr17.73644226.+	chr17	73644226	73644227	+	0	NA	TTS (NM_001162997)	TTS (NM_001162997)	1580	NM_001162997	100130933	Hs.662541	NM_001162997	ENSG00000259120	SMIM6	C17orf110	small integral membrane protein 6	protein-coding
chr6.13335738.-	chr6	13335738	13335739	-	0	NA	Intergenic	AluYa5|SINE|Alu	6951	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chrX.35517640.+	chrX	35517640	35517641	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-298819	NM_001099921	139604	Hs.700562	NM_001099921	ENSG00000189023	MAGEB16	-	"melanoma antigen family B, 16"	protein-coding
chr1.57020008.-	chr1	57020008	57020009	-	0	NA	"intron (NM_003713, intron 1 of 5)"	AluY|SINE|Alu	-25249	NM_003713	8613	Hs.619002	NM_003713	ENSG00000162407	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
chr2.122878823.-	chr2	122878823	122878824	-	0	NA	Intergenic	AluY|SINE|Alu	-365702	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr15.20244642.+	chr15	20244642	20244643	+	0	NA	Intergenic	AluSp|SINE|Alu	-243355	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr1.210574693.-	chr1	210574693	210574694	-	0	NA	"intron (NM_001170587, intron 4 of 10)"	AluSx1|SINE|Alu	-72053	NM_001170580	55733	Hs.58650	NM_001122834	ENSG00000054392	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
chr19.48476355.+	chr19	48476355	48476356	+	0	NA	"intron (NM_001128326, intron 5 of 5)"	AluY|SINE|Alu	17416	NR_024217	100170218	Hs.723092	NR_024217		SNAR-C2	-	small ILF3/NF90-associated RNA C2	snRNA
chr16.31996250.+	chr16	31996250	31996251	+	0	NA	Intergenic	AluY|SINE|Alu	111171	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr19.9311345.-	chr19	9311345	9311346	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14202	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr1.21995652.-	chr1	21995652	21995653	-	0	NA	"intron (NM_001145657, intron 1 of 26)"	CpG	-204	NM_002885	5909	Hs.148178	NM_001145657	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
chr2.219297606.+	chr2	219297606	219297607	+	0	NA	"exon (NM_007127, exon 13 of 20)"	"exon (NM_007127, exon 13 of 20)"	13768	NM_007127	7429	Hs.654595	NM_007127		VIL1	D2S1471|VIL	villin 1	protein-coding
chr16.49498952.-	chr16	49498952	49498953	-	0	NA	Intergenic	CpG	-91144	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr16.447373.+	chr16	447373	447374	+	0	NA	"intron (NM_005009, intron 1 of 4)"	CpG	181	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr22.24150166.-	chr22	24150166	24150167	-	0	NA	"intron (NM_003073, intron 5 of 8)"	AluY|SINE|Alu	-21016	NM_001007468	6598	Hs.534350	NM_001007468	ENSG00000099956	SMARCB1	BAF47|INI1|MRD15|RDT|RTPS1|SNF5|SNF5L1|Sfh1p|Snr1|hSNFS	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1"	protein-coding
chr8.98787939.+	chr8	98787939	98787940	+	0	NA	"5' UTR (NM_018407, exon 1 of 7)"	"5' UTR (NM_018407, exon 1 of 7)"	130	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr17.7812571.-	chr17	7812571	7812572	-	0	NA	"exon (NM_005852, exon 36 of 39)"	"exon (NM_005852, exon 36 of 39)"	-3130	NR_003000	677763		NR_003000		SCARNA21	ACA68	small Cajal body-specific RNA 21	miscRNA
chr17.81009571.+	chr17	81009571	81009572	+	0	NA	"intron (NM_001009905, intron 1 of 12)"	CpG	115	NM_001009905	146712	Hs.607824	NM_001009905	ENSG00000175711	B3GNTL1	B3GNT8	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1"	protein-coding
chr18.11959919.+	chr18	11959919	11959920	+	0	NA	Intergenic	SVA_D|Other|Other	-21508	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr9.8857450.+	chr9	8857450	8857451	+	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	-123504	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.22594664.-	chr8	22594664	22594665	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43849	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr1.48044195.+	chr1	48044195	48044196	+	0	NA	Intergenic	Intergenic	142506	NM_004474	2306	Hs.166188	NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
chr16.87695781.+	chr16	87695781	87695782	+	0	NA	"intron (NR_073379, intron 2 of 5)"	"intron (NR_073379, intron 2 of 5)"	59288	NM_001271605	57338	Hs.733790	NM_001271604	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
chr15.30643901.+	chr15	30643901	30643902	+	0	NA	Intergenic	AluSx1|SINE|Alu	41963	NM_148911	89832	Hs.510853	NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10	"CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion"	protein-coding
chr7.130418521.-	chr7	130418521	130418522	-	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	-367	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr22.38144978.+	chr22	38144978	38144979	+	0	NA	"intron (NM_138632, intron 1 of 7)"	L2c|LINE|L2	2737	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr1.5762913.+	chr1	5762913	5762914	+	0	NA	Intergenic	AluSp|SINE|Alu	138782	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	miscRNA
chr15.59685750.-	chr15	59685750	59685751	-	0	NA	Intergenic	AluSg4|SINE|Alu	20679	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
chr1.2706108.-	chr1	2706108	2706109	-	0	NA	"exon (NM_001242672, exon 1 of 7)"	"exon (NM_001242672, exon 1 of 7)"	-122	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr1.8021834.-	chr1	8021834	8021835	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-120	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr19.49061650.+	chr19	49061650	49061651	+	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	6221	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr10.103990481.-	chr10	103990481	103990482	-	0	NA	"exon (NM_005029, exon 4 of 4)"	"exon (NM_005029, exon 4 of 4)"	-4338	NM_152310	83401	Hs.302130	NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
chr6.133986048.+	chr6	133986048	133986049	+	0	NA	Intergenic	SVA_F|Other|Other	-156237	NR_027030	154089	Hs.126165	NR_027030		MGC34034	-	uncharacterized protein MGC34034	miscRNA
chr2.71562050.+	chr2	71562050	71562051	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3165	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr16.33294026.+	chr16	33294026	33294027	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4676	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr8.118789937.-	chr8	118789937	118789938	-	0	NA	Intergenic	SVA_B|Other|Other	-256972	NM_080651	90390	Hs.492612	NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
chr17.7246110.-	chr17	7246110	7246111	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6262	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr1.60870839.-	chr1	60870839	60870840	-	0	NA	Intergenic	AluYa5|SINE|Alu	331397	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chr19.30963822.-	chr19	30963822	30963823	-	0	NA	"intron (NM_014717, intron 2 of 4)"	AluSx|SINE|Alu	-100494	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
chr14.102970589.+	chr14	102970589	102970590	+	0	NA	Intergenic	Intergenic	5539	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr16.73528761.-	chr16	73528761	73528762	-	0	NA	Intergenic	AluSp|SINE|Alu	-108057	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr14.20670541.+	chr14	20670541	20670542	+	0	NA	Intergenic	AluSq2|SINE|Alu	5046	NM_001005503	390439	Hs.554582	NM_001005503	ENSG00000196832	OR11G2	OR14-34	"olfactory receptor, family 11, subfamily G, member 2"	protein-coding
chr12.83122557.+	chr12	83122557	83122558	+	0	NA	"intron (NM_152588, intron 1 of 11)"	LTR12C|LTR|ERV1	41623	NM_152588	160335	Hs.577775	NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chr15.37172807.-	chr15	37172807	37172808	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5927	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr9.1141625.+	chr9	1141625	1141626	+	0	NA	Intergenic	AluY|SINE|Alu	91005	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr1.6143073.+	chr1	6143073	6143074	+	0	NA	"intron (NM_172130, intron 5 of 14)"	"intron (NM_172130, intron 5 of 14)"	36899	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr2.35387134.+	chr2	35387134	35387135	+	0	NA	Intergenic	AluY|SINE|Alu	1195579	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr8.30590126.+	chr8	30590126	30590127	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4640	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr17.43255866.+	chr17	43255866	43255867	+	0	NA	Intergenic	AluY|SINE|Alu	17602	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr2.240371801.+	chr2	240371801	240371802	+	0	NA	Intergenic	SVA_D|Other|Other	-49158	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr20.39978492.-	chr20	39978492	39978493	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8932	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr2.120282007.-	chr2	120282007	120282008	-	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	-21	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr6.64324467.-	chr6	64324467	64324468	-	0	NA	Intergenic	AluSp|SINE|Alu	31964	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
chr19.1651807.+	chr19	1651807	1651808	+	0	NA	"intron (NM_003200, intron 1 of 18)"	GC_rich|Low_complexity|Low_complexity	521	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr16.924588.-	chr16	924588	924589	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69145	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chrX.153657085.-	chrX	153657085	153657086	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-107	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr2.29662861.+	chr2	29662861	29662862	+	0	NA	"intron (NM_004304, intron 4 of 28)"	AluSx1|SINE|Alu	324553	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr16.1845101.+	chr16	1845101	1845102	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-192	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.54614248.+	chr7	54614248	54614249	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4229	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr2.47596446.-	chr2	47596446	47596447	-	0	NA	"5' UTR (NM_002354, exon 1 of 9)"	"5' UTR (NM_002354, exon 1 of 9)"	-159	NM_002354	4072	Hs.542050	NM_002354	ENSG00000119888	EPCAM	DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1	epithelial cell adhesion molecule	protein-coding
chr19.11492328.+	chr19	11492328	11492329	+	0	NA	"intron (NR_033663, intron 4 of 7)"	CpG-12947	2690	NM_000121	2057	Hs.631624	NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
chr2.237068253.+	chr2	237068253	237068254	+	0	NA	Intergenic	CpG	8399	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chrX.91037164.-	chrX	91037164	91037165	-	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	-2904	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr3.95669694.+	chr3	95669694	95669695	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267657	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr20.47588426.+	chr20	47588426	47588427	+	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	50151	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr17.47735125.+	chr17	47735125	47735126	+	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	20400	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr3.57639944.-	chr3	57639944	57639945	-	0	NA	"intron (NM_152678, intron 9 of 19)"	AluY|SINE|Alu	-38872	NM_152678	201627	Hs.91085	NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN/MADD domain containing 6A	protein-coding
chr19.267137.-	chr19	267137	267138	-	0	NA	Intergenic	CpG	-24032	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr14.105560402.-	chr14	105560402	105560403	-	0	NA	Intergenic	CpG	28648	NM_013345	29933	Hs.532504	NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
chr2.240371708.+	chr2	240371708	240371709	+	0	NA	Intergenic	SVA_D|Other|Other	-49065	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr15.91370821.-	chr15	91370821	91370822	-	0	NA	Intergenic	AluSz|SINE|Alu	41064	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr20.33283450.-	chr20	33283450	33283451	-	0	NA	Intergenic	AluY|SINE|Alu	8698	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr9.14830638.+	chr9	14830638	14830639	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51107	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr13.99373200.-	chr13	99373200	99373201	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31729	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr18.73357728.+	chr18	73357728	73357729	+	0	NA	Intergenic	L2|LINE|L2	-218139	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr8.1390544.-	chr8	1390544	1390545	-	0	NA	Intergenic	Intergenic	58988	NM_001277161	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr2.96932121.-	chr2	96932121	96932122	-	0	NA	promoter-TSS (NM_001193304)	promoter-TSS (NM_001193304)	-237	NM_004804	9391	Hs.12109	NM_004804		CIAO1	CIA1|WDR39	cytosolic iron-sulfur protein assembly 1	protein-coding
chr17.35266121.+	chr17	35266121	35266122	+	0	NA	Intergenic	AluSx3|SINE|Alu	-28651	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr1.37546450.+	chr1	37546450	37546451	+	0	NA	Intergenic	SVA_D|Other|Other	-46606	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr15.41539498.+	chr15	41539498	41539499	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16061	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr20.31414381.-	chr20	31414381	31414382	-	0	NA	"intron (NM_012325, intron 2 of 6)"	AluSz|SINE|Alu	-6682	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	"microtubule-associated protein, RP/EB family, member 1"	protein-coding
chr19.4538450.-	chr19	4538450	4538451	-	0	NA	"exon (NM_052972, exon 2 of 2)"	"exon (NM_052972, exon 2 of 2)"	-1586	NM_052972	116844	Hs.655559	NM_052972		LRG1	HMFT1766|LRG	leucine-rich alpha-2-glycoprotein 1	protein-coding
chr12.117737202.-	chr12	117737202	117737203	-	0	NA	"intron (NM_000620, intron 3 of 28)"	AluY|SINE|Alu	-5655	NM_001204213	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr15.60727402.-	chr15	60727402	60727403	-	0	NA	"intron (NM_024611, intron 13 of 15)"	AluY|SINE|Alu	37217	NM_004039	302	Hs.511605	NM_001002857	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
chr7.821286.+	chr7	821286	821287	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33908	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr16.632112.-	chr16	632112	632113	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7245	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr3.128362588.-	chr3	128362588	128362589	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7131	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chrX.19862945.+	chrX	19862945	19862946	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42799	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr6.71123663.-	chr6	71123663	71123664	-	0	NA	"intron (NM_020819, intron 1 of 20)"	CpG	-556	NM_001105531	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr1.183670824.+	chr1	183670824	183670825	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48376	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr14.22016191.+	chr14	22016191	22016192	+	0	NA	Intergenic	AluY|SINE|Alu	-10854	NM_005407	6297	Hs.743336	NM_005407	ENSG00000165821	SALL2	HSAL2|Sal-2|ZNF795|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding
chr17.18785207.-	chr17	18785207	18785208	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16425	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr17.2311340.+	chr17	2311340	2311341	+	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	-7082	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr21.43699109.-	chr21	43699109	43699110	-	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	-36597	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr16.30961002.+	chr16	30961002	30961003	+	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	597	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr13.83333802.-	chr13	83333802	83333803	-	0	NA	Intergenic	AluYb8|SINE|Alu	-1122726	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr7.73470136.-	chr7	73470136	73470137	-	0	NA	"intron (NM_001081753, intron 19 of 30)"	AluSx1|SINE|Alu	-27709	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr11.68855361.+	chr11	68855361	68855362	+	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	39011	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr16.57323323.+	chr16	57323323	57323324	+	0	NA	Intergenic	AluY|SINE|Alu	-4739	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
chr16.1023720.-	chr16	1023720	1023721	-	0	NA	"intron (NR_033645, intron 1 of 11)"	AluY|SINE|Alu	2736	NM_022773	64788	Hs.732776	NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
chr17.73615833.+	chr17	73615833	73615834	+	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	-13681	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr11.129863546.+	chr11	129863546	129863547	+	0	NA	"intron (NM_020228, intron 1 of 21)"	AluY|SINE|Alu	-8973	NR_024233	440072	Hs.630600	NM_001007543		LINC00167	C11orf37|NCRNA00167	long intergenic non-protein coding RNA 167	miscRNA
chr18.909104.+	chr18	909104	909105	+	0	NA	"intron (NM_001117, intron 3 of 3)"	CpG-11552	3907	NM_001117	116	Hs.727476	NM_001099733	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
chr21.44478129.-	chr21	44478129	44478130	-	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	-17911	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr11.62418772.-	chr11	62418772	62418773	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-2002	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr16.84212678.+	chr16	84212678	84212679	+	0	NA	"exon (NM_005679, exon 14 of 14)"	"exon (NM_005679, exon 14 of 14)"	7998	NM_139353	9013	Hs.153022	NM_001243156	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa"	protein-coding
chr22.30781364.-	chr22	30781364	30781365	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	-1938	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr5.170687162.-	chr5	170687162	170687163	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49126	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr20.45935946.+	chr20	45935946	45935947	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11300	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr17.45349417.-	chr17	45349417	45349418	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluSq|SINE|Alu	-18209	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr7.5355973.+	chr7	5355973	5355974	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33412	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr12.107112611.+	chr12	107112611	107112612	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34133	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr2.905799.-	chr2	905799	905800	-	0	NA	Intergenic	Intergenic	40755	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr7.55379443.+	chr7	55379443	55379444	+	0	NA	Intergenic	SVA_D|Other|Other	-53698	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr12.49163981.-	chr12	49163981	49163982	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1839	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr7.130728504.-	chr7	130728504	130728505	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	-63285	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr20.13660628.+	chr20	13660628	13660629	+	0	NA	Intergenic	AluY|SINE|Alu	-41045	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr12.121338290.+	chr12	121338290	121338291	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3865	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr8.95668725.+	chr8	95668725	95668726	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15361	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr7.54614217.+	chr7	54614217	54614218	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4198	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr2.4156317.-	chr2	4156317	4156318	-	0	NA	Intergenic	CpG	134695	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr22.23539106.+	chr22	23539106	23539107	+	0	NA	"intron (NM_004327, intron 1 of 22)"	MER1B|DNA|hAT-Charlie	16554	NM_004327	613	Hs.715409	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	breakpoint cluster region	protein-coding
chr1.77440755.-	chr1	77440755	77440756	-	0	NA	"intron (NM_030965, intron 2 of 4)"	AluSq|SINE|Alu	-107569	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5"	protein-coding
chr9.138065698.-	chr9	138065698	138065699	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7757	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr17.78559330.-	chr17	78559330	78559331	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40705	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr19.1285934.-	chr19	1285934	1285935	-	0	NA	promoter-TSS (NM_001405)	promoter-TSS (NM_001405)	219	NM_001405	1943	Hs.741510	NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin-A2	protein-coding
chrX.53930568.+	chrX	53930568	53930569	+	0	NA	Intergenic	AluSq2|SINE|Alu	139059	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr8.26241069.-	chr8	26241069	26241070	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-546	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr5.179581184.-	chr5	179581184	179581185	-	0	NA	"intron (NM_175062, intron 1 of 13)"	"intron (NM_175062, intron 1 of 13)"	-54946	NM_175062	255426	Hs.190559	NM_001031799	ENSG00000146090	RASGEF1C	-	"RasGEF domain family, member 1C"	protein-coding
chr9.80376634.-	chr9	80376634	80376635	-	0	NA	"intron (NM_002072, intron 5 of 6)"	SVA_F|Other|Other	113402	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	"guanine nucleotide binding protein (G protein), alpha 14"	protein-coding
chr3.15431322.+	chr3	15431322	15431323	+	0	NA	Intergenic	AluSp|SINE|Alu	37720	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr6.99797591.-	chr6	99797591	99797592	-	0	NA	promoter-TSS (NM_032511)	promoter-TSS (NM_032511)	60	NM_032511	84553	Hs.573245	NM_032511		FAXC	C6orf168|dJ273F20	failed axon connections homolog (Drosophila)	protein-coding
chr19.45678464.+	chr19	45678464	45678465	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3037	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr6.151727633.-	chr6	151727633	151727634	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14956	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr6.43070134.-	chr6	43070134	43070135	-	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	-25582	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr7.2671588.+	chr7	2671588	2671589	+	0	NA	promoter-TSS (NM_025250)	promoter-TSS (NM_025250)	-15	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety homolog 3 (Drosophila)	protein-coding
chr9.116792824.+	chr9	116792824	116792825	+	0	NA	"intron (NM_133374, intron 10 of 13)"	"intron (NM_133374, intron 10 of 13)"	47928	NM_001633	259	Hs.436911	NM_001633	ENSG00000106927	AMBP	A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI	alpha-1-microglobulin/bikunin precursor	protein-coding
chr2.101816752.-	chr2	101816752	101816753	-	0	NA	Intergenic	AluY|SINE|Alu	48906	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	"TBC1 domain family, member 8 (with GRAM domain)"	protein-coding
chr3.29288114.-	chr3	29288114	29288115	-	0	NA	Intergenic	AluY|SINE|Alu	34689	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr18.48196291.-	chr18	48196291	48196292	-	0	NA	"intron (NM_002747, intron 2 of 5)"	AluY|SINE|Alu	-109807	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr15.41613088.-	chr15	41613088	41613089	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11731	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr12.122479168.+	chr12	122479168	122479169	+	0	NA	"intron (NM_001024808, intron 3 of 5)"	MIRb|SINE|MIR	19307	NM_001024808	605	Hs.530970	NM_001024808		BCL7A	BCL7	B-cell CLL/lymphoma 7A	protein-coding
chr2.1896149.+	chr2	1896149	1896150	+	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	-147858	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr17.18575642.+	chr17	18575642	18575643	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	852	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr3.36421974.-	chr3	36421974	36421975	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	123	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chrM.6571.-	chrM	6571	6572	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr13.114898627.-	chr13	114898627	114898628	-	0	NA	promoter-TSS (NM_007368)	promoter-TSS (NM_007368)	532	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr10.43914871.+	chr10	43914871	43914872	+	0	NA	Intergenic	AluY|SINE|Alu	-10175	NM_001098204	3185	Hs.712955	NM_001098204	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
chr15.100514162.-	chr15	100514162	100514163	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167030	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr1.937271.+	chr1	937271	937272	+	0	NA	Intergenic	CpG-24	-1719	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr18.21269764.+	chr18	21269764	21269765	+	0	NA	"exon (NM_001127717, exon 1 of 74)"	"exon (NM_001127717, exon 1 of 74)"	202	NM_001127717	3909	Hs.436367	NM_000227	ENSG00000053747	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	"laminin, alpha 3"	protein-coding
chr10.59080654.-	chr10	59080654	59080655	-	0	NA	Intergenic	Intergenic	16335	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr1.21714343.-	chr1	21714343	21714344	-	0	NA	Intergenic	SVA_F|Other|Other	42309	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr11.9243363.-	chr11	9243363	9243364	-	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	-43510	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr21.43198312.-	chr21	43198312	43198313	-	0	NA	Intergenic	Intergenic	11063	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr5.141558672.-	chr5	141558672	141558673	-	0	NA	Intergenic	AluSg|SINE|Alu	-70348	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr5.64597646.-	chr5	64597646	64597647	-	0	NA	"intron (NM_197941, intron 9 of 24)"	AluSx|SINE|Alu	-180058	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	"ADAM metallopeptidase with thrombospondin type 1 motif, 6"	protein-coding
chr6.84743562.+	chr6	84743562	84743563	+	0	NA	"5' UTR (NM_138409, exon 1 of 4)"	"5' UTR (NM_138409, exon 1 of 4)"	142	NM_138409	112609	Hs.370055	NM_138409	ENSG00000135324	MRAP2	C6orf117|RP11-51G5.2|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
chr16.1228059.+	chr16	1228059	1228060	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24818	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr7.63023253.+	chr7	63023253	63023254	+	0	NA	Intergenic	Intergenic	-58215	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr1.2587437.+	chr1	2587437	2587438	+	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	-22956	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr9.27921962.-	chr9	27921962	27921963	-	0	NA	Intergenic	AluSc8|SINE|Alu	348098	NM_001256054	203228	Hs.493639	NM_001256054	ENSG00000147894	C9orf72	ALSFTD|FTDALS	chromosome 9 open reading frame 72	protein-coding
chrX.40029680.+	chrX	40029680	40029681	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	6902	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr12.33592612.-	chr12	33592612	33592613	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-142	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr22.50681856.+	chr22	50681856	50681857	+	0	NA	"intron (NM_020461, intron 1 of 24)"	AluSg|SINE|Alu	1544	NM_020461	85378	Hs.336431	NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCPHCR	"tubulin, gamma complex associated protein 6"	protein-coding
chr19.17004914.+	chr19	17004914	17004915	+	0	NA	"intron (NM_015692, intron 41 of 41)"	"intron (NM_015692, intron 41 of 41)"	5088	NM_003950	9002	Hs.137574	NM_003950		F2RL3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding
chr3.84566232.+	chr3	84566232	84566233	+	0	NA	Intergenic	AluY|SINE|Alu	352494	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chrM.6527.+	chrM	6527	6528	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.65337803.+	chr6	65337803	65337804	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673508	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr7.1570465.-	chr7	1570465	1570466	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-97	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr7.532221.+	chr7	532221	532222	+	0	NA	Intergenic	Intergenic	27260	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr19.48836558.-	chr19	48836558	48836559	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7929	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr16.58300804.+	chr16	58300804	58300805	+	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	16964	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr20.33283451.+	chr20	33283451	33283452	+	0	NA	Intergenic	AluY|SINE|Alu	-8697	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr12.84357936.-	chr12	84357936	84357937	-	0	NA	Intergenic	AluY|SINE|Alu	-948672	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr17.76455071.-	chr17	76455071	76455072	-	0	NA	"intron (NM_173628, intron 61 of 80)"	CpG	25921	NR_102401	100996295	Hs.638630	XM_003846285		LOC100996295	-	uncharacterized LOC100996295	miscRNA
chr3.42642483.+	chr3	42642483	42642484	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	89	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr13.114306333.+	chr13	114306333	114306334	+	0	NA	"intron (NM_000705, intron 4 of 6)"	"intron (NM_000705, intron 4 of 6)"	6180	NM_000705	496	Hs.434202	NM_000705	ENSG00000186009	ATP4B	ATP6B	"ATPase, H+/K+ exchanging, beta polypeptide"	protein-coding
chr1.236444946.-	chr1	236444946	236444947	-	0	NA	"intron (NM_019891, intron 1 of 15)"	CpG	-393	NM_019891	56605	Hs.558519	NM_019891	ENSG00000086619	ERO1LB	-	ERO1-like beta (S. cerevisiae)	protein-coding
chr20.46019510.+	chr20	46019510	46019511	+	0	NA	Intergenic	AluY|SINE|Alu	-34036	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr6.12041600.-	chr6	12041600	12041601	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28876	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr8.95668723.-	chr8	95668723	95668724	-	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	-15359	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr19.18980241.+	chr19	18980241	18980242	+	0	NA	"intron (NM_021267, intron 7 of 7)"	CpG	26712	NM_001492	2657	Hs.412355	NM_001492	ENSG00000130283	GDF1	DORV|DTGA3	growth differentiation factor 1	protein-coding
chr5.693681.-	chr5	693681	693682	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	171	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr22.46303167.-	chr22	46303167	46303168	-	0	NA	Intergenic	Intergenic	-69841	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr3.47411282.-	chr3	47411282	47411283	-	0	NA	Intergenic	AluSq|SINE|Alu	11209	NM_015466	25930	Hs.25524	NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|PTP-TD14	"protein tyrosine phosphatase, non-receptor type 23"	protein-coding
chr21.44582114.-	chr21	44582114	44582115	-	0	NA	Intergenic	Intergenic	7027	NM_000394	1409	Hs.184085	NM_000394	ENSG00000160202	CRYAA	CRYA1|HSPB4	"crystallin, alpha A"	protein-coding
chr2.239047570.-	chr2	239047570	239047571	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-207	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr6.18155583.-	chr6	18155583	18155584	-	0	NA	promoter-TSS (NM_000367)	promoter-TSS (NM_000367)	36	NM_153042	221656	Hs.709336	NM_153042	ENSG00000165097	KDM1B	AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2	lysine (K)-specific demethylase 1B	protein-coding
chr20.46019545.-	chr20	46019545	46019546	-	0	NA	Intergenic	AluY|SINE|Alu	34071	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr5.3595160.+	chr5	3595160	3595161	+	0	NA	Intergenic	CpG	-1008	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr6.57322602.+	chr6	57322602	57322603	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140180	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr10.134034460.-	chr10	134034460	134034461	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34046	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr19.7123250.+	chr19	7123250	7123251	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53779	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr20.8656861.-	chr20	8656861	8656862	-	0	NA	"intron (NM_182734, intron 9 of 32)"	AluSx|SINE|Alu	392840	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	"phospholipase C, beta 4"	protein-coding
chr6.1610265.+	chr6	1610265	1610266	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-416	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr14.51123319.+	chr14	51123319	51123320	+	0	NA	"intron (NM_021818, intron 2 of 4)"	AluY|SINE|Alu	11752	NM_021818	60485	Hs.706933	NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador homolog 1 (Drosophila)	protein-coding
chr10.104209708.+	chr10	104209708	104209709	+	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	134	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chrX.133643952.+	chrX	133643952	133643953	+	0	NA	Intergenic	L1PA10|LINE|L1	30340	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr4.26862496.-	chr4	26862496	26862497	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-183	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr11.67759436.-	chr11	67759436	67759437	-	0	NA	"intron (NM_030930, intron 10 of 10)"	CpG	-12157	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chr2.17942260.-	chr2	17942260	17942261	-	0	NA	"intron (NM_001130009, intron 2 of 13)"	AluJb|SINE|Alu	-6846	NM_001130009	348654	Hs.467793	NM_001130009	ENSG00000178295	GEN1	Gen	Gen endonuclease homolog 1 (Drosophila)	protein-coding
chr13.21644864.+	chr13	21644864	21644865	+	0	NA	Intergenic	AluSx|SINE|Alu	-9142	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr1.23070266.+	chr1	23070266	23070267	+	0	NA	"intron (NM_017449, intron 1 of 15)"	MIRb|SINE|MIR	24256	NR_039832	100616391		NR_039832		MIR4684	-	microRNA 4684	miscRNA
chr10.134743493.-	chr10	134743493	134743494	-	0	NA	"intron (NM_001200049, intron 8 of 57)"	"intron (NM_001200049, intron 8 of 57)"	-12596	NM_001200049	54777	Hs.719815	NM_001200049	ENSG00000171811	TTC40	C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	tetratricopeptide repeat domain 40	protein-coding
chr7.1474527.+	chr7	1474527	1474528	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24582	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr2.905942.+	chr2	905942	905943	+	0	NA	Intergenic	Intergenic	-40612	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr12.70156395.-	chr12	70156395	70156396	-	0	NA	"intron (NM_022456, intron 3 of 10)"	AluY|SINE|Alu	16359	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
chr2.202092441.+	chr2	202092441	202092442	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5725	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr1.3527835.-	chr1	3527835	3527836	-	0	NA	"5' UTR (NM_001409, exon 1 of 37)"	"5' UTR (NM_001409, exon 1 of 37)"	-224	NM_001409	1953	Hs.593645	NM_001409		MEGF6	EGFL3	multiple EGF-like-domains 6	protein-coding
chr6.168149246.-	chr6	168149246	168149247	-	0	NA	Intergenic	Intergenic	-48293	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr7.56143789.+	chr7	56143789	56143790	+	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	11872	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr17.81057095.+	chr17	81057095	81057096	+	0	NA	Intergenic	Intergenic	19528	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr2.122878822.-	chr2	122878822	122878823	-	0	NA	Intergenic	AluY|SINE|Alu	-365701	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr19.14142600.+	chr19	14142600	14142601	+	0	NA	promoter-TSS (NM_004843)	promoter-TSS (NM_004843)	48	NM_004843	9466	Hs.352155	NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	"interleukin 27 receptor, alpha"	protein-coding
chr2.90482961.-	chr2	90482961	90482962	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365014	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr20.39978519.-	chr20	39978519	39978520	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8959	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr8.27695276.-	chr8	27695276	27695277	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-73	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr8.144546595.+	chr8	144546595	144546596	+	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	-33993	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr14.36549600.-	chr14	36549600	36549601	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9967	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr16.3755324.+	chr16	3755324	3755325	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12274	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr8.1205013.-	chr8	1205013	1205014	-	0	NA	Intergenic	Intergenic	-45814	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr17.74894598.+	chr17	74894598	74894599	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25869	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr7.157413778.+	chr7	157413778	157413779	+	0	NA	"intron (NM_130842, intron 14 of 21)"	"intron (NM_130842, intron 14 of 21)"	-46664	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr20.5213467.-	chr20	5213467	5213468	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81548	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr10.92922924.+	chr10	92922924	92922925	+	0	NA	"intron (NR_046435, intron 1 of 2)"	GC_rich|Low_complexity|Low_complexity	155	NM_001257101	84333	Hs.500512	NM_001256549	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
chr2.1554790.+	chr2	1554790	1554791	+	0	NA	Intergenic	Intergenic	136610	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr1.16826571.-	chr1	16826571	16826572	-	0	NA	Intergenic	AluSx|SINE|Alu	7375	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	"ciliary rootlet coiled-coil, rootletin pseudogene 3"	pseudo
chr19.34394367.-	chr19	34394367	34394368	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106616	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr4.17513779.+	chr4	17513779	17513780	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	78	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr3.52918380.+	chr3	52918380	52918381	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13217	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr3.22099270.-	chr3	22099270	22099271	-	0	NA	Intergenic	AluSx|SINE|Alu	306454	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr11.69189610.+	chr11	69189610	69189611	+	0	NA	Intergenic	Intergenic	127988	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr20.3079573.+	chr20	3079573	3079574	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7984	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	miscRNA
chr3.192348501.-	chr3	192348501	192348502	-	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	-96887	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr3.186441578.-	chr3	186441578	186441579	-	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	-6480	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr11.7603333.-	chr11	7603333	7603334	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15084	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr9.129229378.-	chr9	129229378	129229379	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56595	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr20.61471741.-	chr20	61471741	61471742	-	0	NA	TTS (NM_006602)	TTS (NM_006602)	4735	NM_080750	100132911	Hs.126248	NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1|dJ885L7.5	"DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1"	protein-coding
chr7.1967870.+	chr7	1967870	1967871	+	0	NA	"intron (NM_001013836, intron 17 of 18)"	CpG	-83981	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr8.144681695.+	chr8	144681695	144681696	+	0	NA	"exon (NM_032862, exon 1 of 1)"	"exon (NM_032862, exon 1 of 1)"	1621	NM_032862	84948	Hs.71574	NM_032862	ENSG00000179886	TIGD5	-	tigger transposable element derived 5	protein-coding
chr16.3733153.-	chr16	3733153	3733154	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30213	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr18.57708980.-	chr18	57708980	57708981	-	0	NA	Intergenic	AluSz|SINE|Alu	-141788	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
chr9.10974546.+	chr9	10974546	10974547	+	0	NA	Intergenic	L1PBa|LINE|L1	-361823	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr13.114878015.+	chr13	114878015	114878016	+	0	NA	"intron (NM_007368, intron 1 of 23)"	MER5A|DNA|hAT-Charlie	20080	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr8.144360660.-	chr8	144360660	144360661	-	0	NA	Intergenic	Intergenic	-11053	NM_138465	2738	Hs.400533	NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
chr7.26294451.-	chr7	26294451	26294452	-	0	NA	Intergenic	AluSx1|SINE|Alu	37064	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr8.107670104.-	chr8	107670104	107670105	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-68	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr18.73357752.-	chr18	73357752	73357753	-	0	NA	Intergenic	L2|LINE|L2	218163	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr15.63892669.-	chr15	63892669	63892670	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-357	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr11.100596549.-	chr11	100596549	100596550	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38142	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr5.133831561.+	chr5	133831561	133831562	+	0	NA	Intergenic	AluY|SINE|Alu	-30237	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr4.2554453.+	chr4	2554453	2554454	+	0	NA	Intergenic	AluY|SINE|Alu	-72706	NM_001256667	8603	Hs.652364	NM_001256666	ENSG00000125386	FAM193A	C4orf8	"family with sequence similarity 193, member A"	protein-coding
chr1.16345323.-	chr1	16345323	16345324	-	0	NA	promoter-TSS (NM_014424)	promoter-TSS (NM_014424)	38	NM_014424	27129	Hs.502612	NM_014424	ENSG00000173641	HSPB7	cvHSP	"heat shock 27kDa protein family, member 7 (cardiovascular)"	protein-coding
chr21.44390827.-	chr21	44390827	44390828	-	0	NA	Intergenic	AluY|SINE|Alu	3816	NM_004571	5316	Hs.431043	NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
chr7.5355983.-	chr7	5355983	5355984	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33422	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr9.127626595.-	chr9	127626595	127626596	-	0	NA	Intergenic	AluSx|SINE|Alu	2355	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr18.73357768.-	chr18	73357768	73357769	-	0	NA	Intergenic	L2|LINE|L2	218179	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr20.43926660.-	chr20	43926660	43926661	-	0	NA	"exon (NM_030590, exon 7 of 9)"	"exon (NM_030590, exon 7 of 9)"	8831	NM_014276	11317	Hs.248217	NM_014276		RBPJL	RBP-L|RBPSUHL|SUH|SUHL	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding
chr11.916058.-	chr11	916058	916059	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	1000	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr17.18575647.+	chr17	18575647	18575648	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	847	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chrX.153736337.+	chrX	153736337	153736338	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8229	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr4.184427543.+	chr4	184427543	184427544	+	0	NA	"intron (NM_001564, intron 1 of 1)"	CpG	1323	NM_001564	3622	Hs.107153	NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	"inhibitor of growth family, member 2"	protein-coding
chr1.21759018.+	chr1	21759018	21759019	+	0	NA	Intergenic	AluSx|SINE|Alu	-7565	NR_046176	84224	Hs.325422	NM_001256416	ENSG00000142794	NBPF3	AE2	"neuroblastoma breakpoint family, member 3"	protein-coding
chr15.100514178.-	chr15	100514178	100514179	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167046	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr20.45935936.+	chr20	45935936	45935937	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11310	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr6.125475709.+	chr6	125475709	125475710	+	0	NA	"intron (NM_001003395, intron 1 of 6)"	CpG	289	NM_001003395	7164	Hs.591347	NM_001003395	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
chr9.16914711.+	chr9	16914711	16914712	+	0	NA	Intergenic	AluY|SINE|Alu	-43925	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr4.163164041.-	chr4	163164041	163164042	-	0	NA	Intergenic	AluY|SINE|Alu	78855	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr2.11817362.-	chr2	11817362	11817363	-	0	NA	promoter-TSS (NM_001261428)	promoter-TSS (NM_001261428)	343	NM_001261428	23175	Hs.739141	NM_001261427	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
chr16.55357999.-	chr16	55357999	55358000	-	0	NA	promoter-TSS (NM_024335)	promoter-TSS (NM_024335)	472	NM_024335	79190	Hs.369907	NM_024335		IRX6	IRX-3|IRX7|IRXB3	iroquois homeobox 6	protein-coding
chr6.7878928.+	chr6	7878928	7878929	+	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	31382	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr1.982963.+	chr1	982963	982964	+	0	NA	"exon (NM_198576, exon 21 of 36)"	"exon (NM_198576, exon 21 of 36)"	26724	NM_001205252	401934	Hs.568137	NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
chr1.43081224.+	chr1	43081224	43081225	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42824	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr5.68358809.-	chr5	68358809	68358810	-	0	NA	Intergenic	SVA_D|Other|Other	30967	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr8.56758276.-	chr8	56758276	56758277	-	0	NA	Intergenic	AluSx3|SINE|Alu	34110	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr14.30961049.-	chr14	30961049	30961050	-	0	NA	Intergenic	AluSz|SINE|Alu	67280	NM_017769	55632	Hs.605081	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
chr15.67834991.+	chr15	67834991	67834992	+	0	NA	promoter-TSS (NM_145160)	promoter-TSS (NM_145160)	-30	NM_002757	5607	Hs.114198	NM_001206804	ENSG00000137764	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
chr7.95178724.-	chr7	95178724	95178725	-	0	NA	Intergenic	AluY|SINE|Alu	-47201	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr1.220909506.+	chr1	220909506	220909507	+	0	NA	Intergenic	AluSc|SINE|Alu	-12170	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr5.167671792.-	chr5	167671792	167671793	-	0	NA	"intron (NM_001122679, intron 26 of 28)"	AluSx|SINE|Alu	47273	NM_001161662	23286	Hs.484047	NM_001161661	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA	WW and C2 domain containing 1	protein-coding
chr9.7934866.+	chr9	7934866	7934867	+	0	NA	Intergenic	AluY|SINE|Alu	-135067	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr1.54775782.-	chr1	54775782	54775783	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96197	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr1.3460507.+	chr1	3460507	3460508	+	0	NA	"intron (NM_001409, intron 4 of 36)"	"intron (NM_001409, intron 4 of 36)"	16847	NR_030277	693135		NR_030277		MIR551A	MIRN551A	microRNA 551a	miscRNA
chr1.10769496.+	chr1	10769496	10769497	+	0	NA	"intron (NM_001079843, intron 2 of 20)"	"intron (NM_001079843, intron 2 of 20)"	87237	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr5.25101022.+	chr5	25101022	25101023	+	0	NA	Intergenic	AluSc|SINE|Alu	-260330	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr6.64246150.+	chr6	64246150	64246151	+	0	NA	Intergenic	AluSq|SINE|Alu	-35770	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr16.924591.+	chr16	924591	924592	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69148	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr19.11546886.-	chr19	11546886	11546887	-	0	NA	promoter-TSS (NM_145045)	promoter-TSS (NM_145045)	-617	NM_002743	5589	Hs.610830	NM_001001329	ENSG00000130175	PRKCSH	AGE-R2|G19P1|PCLD|PKCSH|PLD1	protein kinase C substrate 80K-H	protein-coding
chr10.45240311.-	chr10	45240311	45240312	-	0	NA	Intergenic	AluSx1|SINE|Alu	166453	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr15.75748046.+	chr15	75748046	75748047	+	0	NA	promoter-TSS (NM_001145357)	promoter-TSS (NM_001145357)	78	NM_001145357	25942	Hs.513039	NM_001145357	ENSG00000169375	SIN3A	-	SIN3 transcription regulator homolog A (yeast)	protein-coding
chr2.232277206.+	chr2	232277206	232277207	+	0	NA	Intergenic	Intergenic	16871	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr19.48877007.-	chr19	48877007	48877008	-	0	NA	"exon (NM_012451, exon 3 of 5)"	"exon (NM_012451, exon 3 of 5)"	-9356	NM_012451	23546	Hs.408333	NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
chr1.171662933.+	chr1	171662933	171662934	+	0	NA	Intergenic	SVA_C|Other|Other	-41160	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr6.74964950.+	chr6	74964950	74964951	+	0	NA	Intergenic	SVA_C|Other|Other	559436	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr5.172640599.-	chr5	172640599	172640600	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-21716	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr21.46737149.+	chr21	46737149	46737150	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	29182	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr6.15189311.-	chr6	15189311	15189312	-	0	NA	Intergenic	SVA_F|Other|Other	56895	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr16.4835177.-	chr16	4835177	4835178	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3221	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr1.110881067.-	chr1	110881067	110881068	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-726	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr12.99288679.+	chr12	99288679	99288680	+	0	NA	promoter-TSS (NM_001204079)	promoter-TSS (NM_001204079)	-5	NM_001204080	56899	Hs.506458	NM_001204065	ENSG00000185046	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chr6.25384346.+	chr6	25384346	25384347	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104690	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr11.16894147.+	chr11	16894147	16894148	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133999	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr5.178812398.+	chr5	178812398	178812399	+	0	NA	Intergenic	AluY|SINE|Alu	-39967	NM_014244	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr17.45349565.-	chr17	45349565	45349566	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18357	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr16.88074420.+	chr16	88074420	88074421	+	0	NA	"intron (NM_001173541, intron 10 of 11)"	"intron (NM_001173541, intron 10 of 11)"	70796	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr11.3224539.+	chr11	3224539	3224540	+	0	NA	Intergenic	CpG	-15023	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr4.141334756.+	chr4	141334756	141334757	+	0	NA	"intron (NM_004362, intron 1 of 14)"	L1PA2|LINE|L1	14059	NM_001130675	1047	Hs.86368	NM_001130675	ENSG00000153132	CLGN	-	calmegin	protein-coding
chrX.110926754.-	chrX	110926754	110926755	-	0	NA	"intron (NM_001257239, intron 2 of 3)"	AluSx|SINE|Alu	-1869	NM_001257239	79868	Hs.443061	NM_001039210	ENSG00000101901	ALG13	CDG1S|CXorf45|GLT28D1|MDS031|TDRD13|YGL047W	"ALG13, UDP-N-acetylglucosaminyltransferase subunit"	protein-coding
chr14.51521350.-	chr14	51521350	51521351	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41072	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr2.198058503.-	chr2	198058503	198058504	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117018	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr8.144512823.-	chr8	144512823	144512824	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	221	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr10.35559790.-	chr10	35559790	35559791	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	-23837	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr1.160239874.-	chr1	160239874	160239875	-	0	NA	Intergenic	AluJo|SINE|Alu	7524	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr18.60740385.+	chr18	60740385	60740386	+	0	NA	Intergenic	AluYb8|SINE|Alu	246228	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr5.141558664.-	chr5	141558664	141558665	-	0	NA	Intergenic	AluSg|SINE|Alu	-70340	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr14.22016195.+	chr14	22016195	22016196	+	0	NA	Intergenic	AluY|SINE|Alu	-10858	NM_005407	6297	Hs.743336	NM_005407	ENSG00000165821	SALL2	HSAL2|Sal-2|ZNF795|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding
chr7.56888245.+	chr7	56888245	56888246	+	0	NA	Intergenic	Intergenic	61594	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr12.49856946.-	chr12	49856946	49856947	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73989	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr14.105158911.+	chr14	105158911	105158912	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2968	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr18.54318535.+	chr18	54318535	54318536	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-81	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chrX.134049347.+	chrX	134049347	134049348	+	0	NA	promoter-TSS (NM_019556)	promoter-TSS (NM_019556)	-50	NM_019556	56180	Hs.743299	NM_019556	ENSG00000101928	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
chr9.4740765.-	chr9	4740765	4740766	-	0	NA	"intron (NM_001199853, intron 1 of 4)"	CpG	-544	NM_001199852	50808	Hs.493362	NM_001199852		AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
chr10.65213739.+	chr10	65213739	65213740	+	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSx|SINE|Alu	-11250	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr5.14460485.+	chr5	14460485	14460486	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121406	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr2.210525384.-	chr2	210525384	210525385	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80981	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr7.1474511.+	chr7	1474511	1474512	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24598	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr17.45349544.+	chr17	45349544	45349545	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18336	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr15.89219689.-	chr15	89219689	89219690	-	0	NA	Intergenic	AluSx|SINE|Alu	-37650	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
chr1.226212461.-	chr1	226212461	226212462	-	0	NA	Intergenic	AluY|SINE|Alu	25395	NM_152608	163859	Hs.520192	NM_152608	ENSG00000143751	SDE2	C1orf55|RP4-671D7.1|dJ671D7.1	SDE2 telomere maintenance homolog (S. pombe)	protein-coding
chr7.5396286.+	chr7	5396286	5396287	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66891	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr1.31586348.-	chr1	31586348	31586349	-	0	NA	Intergenic	AluY|SINE|Alu	47784	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr14.92790171.+	chr14	92790171	92790172	+	0	NA	promoter-TSS (NM_153646)	promoter-TSS (NM_153646)	19	NM_153646	123041	Hs.385530	NM_153646		SLC24A4	NCKX4|SHEP6|SLC24A2	"solute carrier family 24 (sodium/potassium/calcium exchanger), member 4"	protein-coding
chr15.73830922.-	chr15	73830922	73830923	-	0	NA	"intron (NM_001042367, intron 2 of 5)"	AluYk4|SINE|Alu	-94831	NM_012428	27020	Hs.187866	NM_001161363	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
chr10.30145023.-	chr10	30145023	30145024	-	0	NA	Intergenic	AluSx3|SINE|Alu	120293	NM_003174	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
chr5.128197055.-	chr5	128197055	128197056	-	0	NA	Intergenic	AluYk4|SINE|Alu	104155	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr8.27678913.-	chr8	27678913	27678914	-	0	NA	"intron (NM_018492, intron 5 of 7)"	AluSg|SINE|Alu	-16436	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr1.156527509.-	chr1	156527509	156527510	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14887	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr15.44038908.+	chr15	44038908	44038909	+	0	NA	promoter-TSS (NR_002318)	promoter-TSS (NR_002318)	318	NM_005313	2923	Hs.591095	NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HsT17083|P58|PI-PLC	"protein disulfide isomerase family A, member 3"	protein-coding
chr10.28966492.+	chr10	28966492	28966493	+	0	NA	promoter-TSS (NM_012342)	promoter-TSS (NM_012342)	68	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	protein-coding
chr20.33005273.-	chr20	33005273	33005274	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	48857	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr22.41507060.-	chr22	41507060	41507061	-	0	NA	"intron (NM_001429, intron 1 of 30)"	AluSz|SINE|Alu	-18446	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr11.86934397.-	chr11	86934397	86934398	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-185511	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr2.239058220.+	chr2	239058220	239058221	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10857	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr1.17034291.+	chr1	17034291	17034292	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12361	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr2.30144477.+	chr2	30144477	30144478	+	0	NA	promoter-TSS (NM_004304)	promoter-TSS (NM_004304)	0	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr13.23714179.+	chr13	23714179	23714180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40881	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr22.43539385.-	chr22	43539385	43539386	-	0	NA	promoter-TSS (NM_173467)	promoter-TSS (NM_173467)	-18	NR_046423	27349	Hs.349111	NM_014507		MCAT	FASN2C|MCT|MT|NET62|fabD	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding
chr2.210525398.+	chr2	210525398	210525399	+	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	80995	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr2.153119531.+	chr2	153119531	153119532	+	0	NA	Intergenic	AluSg|SINE|Alu	-72220	NM_052905	114793	Hs.654630	NM_052905	ENSG00000157827	FMNL2	FHOD2	formin-like 2	protein-coding
chr22.26439773.+	chr22	26439773	26439774	+	0	NA	Intergenic	AluSx3|SINE|Alu	-125667	NM_001184773	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr19.4717697.+	chr19	4717697	4717698	+	0	NA	"intron (NM_139159, intron 3 of 21)"	"intron (NM_139159, intron 3 of 21)"	6158	NM_139159	91039	Hs.515081	NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPRP-2|DPRP2	dipeptidyl-peptidase 9	protein-coding
chr6.150247110.+	chr6	150247110	150247111	+	0	NA	Intergenic	CpG	-2896	NM_001001788	353091	Hs.558792	NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
chrX.64875787.+	chrX	64875787	64875788	+	0	NA	Intergenic	AluSq2|SINE|Alu	-11724	NM_002444	4478	Hs.87752	NM_002444	ENSG00000147065	MSN	-	moesin	protein-coding
chr15.102520526.+	chr15	102520526	102520527	+	0	NA	Intergenic	TAR1|Satellite|telo	-1230	NR_051985	100288486	Hs.644359	NR_034090	ENSG00000248472	DDX11L9	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9	pseudo
chr2.126013195.+	chr2	126013195	126013196	+	0	NA	Intergenic	AluSc8|SINE|Alu	1230331	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr3.42642496.-	chr3	42642496	42642497	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-76	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr1.23931911.-	chr1	23931911	23931912	-	0	NA	Intergenic	AluSx|SINE|Alu	21913	NR_027042	259283	Hs.523369	NR_027042	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	miscRNA
chr1.113336892.+	chr1	113336892	113336893	+	0	NA	Intergenic	MER70B|LTR|ERVL	73703	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr18.74140106.+	chr18	74140106	74140107	+	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	67040	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr1.204216185.-	chr1	204216185	204216186	-	0	NA	"intron (NM_014935, intron 13 of 22)"	AluJb|SINE|Alu	32965	NM_198447	127845	Hs.532401	NM_198447	ENSG00000174567	GOLT1A	CGI-141|GOT1|HMFN1187|RP11-203F10.3|YMR292W	golgi transport 1A	protein-coding
chr19.11068059.+	chr19	11068059	11068060	+	0	NA	Intergenic	AluSp|SINE|Alu	-3539	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr2.232354865.+	chr2	232354865	232354866	+	0	NA	Intergenic	LTR13|LTR|ERVK	24185	NR_024079	151477	Hs.375211	NR_024079	ENSG00000181798	LINC00471	C2orf52	long intergenic non-protein coding RNA 471	miscRNA
chr12.123465430.-	chr12	123465430	123465431	-	0	NA	TTS (NM_024623)	TTS (NM_024623)	-550	NM_001002252	51329	Hs.103561	NM_001002251	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP-ribosylation-like factor 6 interacting protein 4	protein-coding
chr1.37940147.+	chr1	37940147	37940148	+	0	NA	promoter-TSS (NM_025079)	promoter-TSS (NM_025079)	28	NM_025079	80149	Hs.656294	NM_025079	ENSG00000163874	ZC3H12A	MCPIP|MCPIP1|RP3-423B22.1|dJ423B22.1	zinc finger CCCH-type containing 12A	protein-coding
chr5.179167534.-	chr5	179167534	179167535	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7683	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr2.85360736.-	chr2	85360736	85360737	-	0	NA	"5' UTR (NM_031283, exon 1 of 12)"	"5' UTR (NM_031283, exon 1 of 12)"	-153	NM_031283	83439	Hs.516297	NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	"transcription factor 7-like 1 (T-cell specific, HMG-box)"	protein-coding
chr7.3456552.+	chr7	3456552	3456553	+	0	NA	"intron (NM_152744, intron 1 of 44)"	AluSq|SINE|Alu	115472	NM_152744	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr17.61686665.+	chr17	61686665	61686666	+	0	NA	TTS (NM_016360)	TTS (NM_016360)	8434	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
chr2.217746886.+	chr2	217746886	217746887	+	0	NA	Intergenic	AluSz|SINE|Alu	-22104	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr5.178287391.+	chr5	178287391	178287392	+	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	437	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr7.1102872.+	chr7	1102872	1102873	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	5731	NM_138445	115330	Hs.718624	NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
chrX.152224598.-	chrX	152224598	152224599	-	0	NA	promoter-TSS (NM_013364)	promoter-TSS (NM_013364)	168	NM_013364	29944	Hs.744496	NM_013364	ENSG00000183837	PNMA3	MA3|MA5	paraneoplastic Ma antigen 3	protein-coding
chr12.49163978.+	chr12	49163978	49163979	+	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	1842	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr7.130418511.-	chr7	130418511	130418512	-	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	-377	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr22.18532583.+	chr22	18532583	18532584	+	0	NA	Intergenic	AluSx1|SINE|Alu	20432	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr8.67454354.-	chr8	67454354	67454355	-	0	NA	Intergenic	Intergenic	-48863	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr6.111165906.-	chr6	111165906	111165907	-	0	NA	Intergenic	AluSc8|SINE|Alu	29494	NM_015076	23097	Hs.584867	NM_015076	ENSG00000155111	CDK19	CDC2L6|CDK11|bA346C16.3	cyclin-dependent kinase 19	protein-coding
chr4.1626827.+	chr4	1626827	1626828	+	0	NA	Intergenic	CpG	58891	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr15.41486456.+	chr15	41486456	41486457	+	0	NA	"intron (NM_152596, intron 7 of 9)"	AluY|SINE|Alu	36439	NM_152596	161829	Hs.307999	NM_152596	ENSG00000178997	EXD1	EXDL1	exonuclease 3'-5' domain containing 1	protein-coding
chr9.136941010.+	chr9	136941010	136941011	+	0	NA	Intergenic	SVA_B|Other|Other	-7869	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr2.207036837.+	chr2	207036837	207036838	+	0	NA	Intergenic	SVA_D|Other|Other	9885	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr1.168864433.+	chr1	168864433	168864434	+	0	NA	Intergenic	AluY|SINE|Alu	108254	NR_024160	79100	Hs.250624	NR_024160	ENSG00000225826	LINC00626	-	long intergenic non-protein coding RNA 626	miscRNA
chr4.2878505.-	chr4	2878505	2878506	-	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	-32921	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr1.9832331.+	chr1	9832331	9832332	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52219	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr3.49757507.-	chr3	49757507	49757508	-	0	NA	promoter-TSS (NM_198722)	promoter-TSS (NM_198722)	269	NM_198722	386724	Hs.567903	NM_198722	ENSG00000176020	AMIGO3	AMIGO-3	adhesion molecule with Ig-like domain 3	protein-coding
chr8.145748436.+	chr8	145748436	145748437	+	0	NA	"exon (NM_001024678, exon 5 of 5)"	"exon (NM_001024678, exon 5 of 5)"	3980	NM_001024678	441381	Hs.740859	NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
chr17.37145995.+	chr17	37145995	37145996	+	0	NA	Intergenic	AluY|SINE|Alu	-22340	NM_001008777	494188	Hs.549536	NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
chr1.110881050.+	chr1	110881050	110881051	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	743	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr4.42658259.-	chr4	42658259	42658260	-	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	-863	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr2.88926033.+	chr2	88926033	88926034	+	0	NA	"intron (NM_004836, intron 1 of 16)"	"intron (NM_004836, intron 1 of 16)"	1061	NM_004836	9451	Hs.591589	NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2-alpha kinase 3	protein-coding
chr8.6875647.-	chr8	6875647	6875648	-	0	NA	"intron (NM_004084, intron 1 of 2).3"	"intron (NM_004084, intron 1 of 2).3"	-169	NM_005217	1668	Hs.654448	NM_005217	ENSG00000239839	DEFA3	DEF3|HNP-3|HNP3|HP-3|HP3	"defensin, alpha 3, neutrophil-specific"	protein-coding
chrX.133565021.+	chrX	133565021	133565022	+	0	NA	Intergenic	AluSp|SINE|Alu	-29154	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr16.33966273.-	chr16	33966273	33966274	-	0	NA	Intergenic	CpG	3770	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr1.115936707.+	chr1	115936707	115936708	+	0	NA	Intergenic	AluYc|SINE|Alu	-55850	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
chrX.69569693.-	chrX	69569693	69569694	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59814	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr1.97799174.-	chr1	97799174	97799175	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237695	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr17.18785147.-	chr17	18785147	18785148	-	0	NA	"intron (NM_002767, intron 6 of 11)"	"intron (NM_002767, intron 6 of 11)"	-16365	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr9.133430002.+	chr9	133430002	133430003	+	0	NA	Intergenic	Intergenic	24879	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr10.135008754.-	chr10	135008754	135008755	-	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	-34783	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr1.156575141.-	chr1	156575141	156575142	-	0	NA	Intergenic	AluSx|SINE|Alu	3862	NM_015590	54865	Hs.193832	NM_017725	ENSG00000160818	GPATCH4	GPATC4	G patch domain containing 4	protein-coding
chrX.93693175.+	chrX	93693175	93693176	+	0	NA	Intergenic	AluY|SINE|Alu	764163	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chrM.9293.+	chrM	9293	9294	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.132116784.+	chr12	132116784	132116785	+	0	NA	Intergenic	L1ME1|LINE|L1	-78848	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr5.17207794.+	chr5	17207794	17207795	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9138	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr7.64493637.+	chr7	64493637	64493638	+	0	NA	Intergenic	SVA_C|Other|Other	-5095	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr12.54667083.+	chr12	54667083	54667084	+	0	NA	"intron (NM_012117, intron 1 of 4)"	AluSx1|SINE|Alu	6832	NM_012117	23468	Hs.349283	NM_001127321	ENSG00000094916	CBX5	HP1|HP1A	chromobox homolog 5	protein-coding
chr20.61455572.+	chr20	61455572	61455573	+	0	NA	"intron (NM_001853, intron 10 of 31)"	CpG	7158	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chr17.7758407.+	chr17	7758407	7758408	+	0	NA	promoter-TSS (NM_203411)	promoter-TSS (NM_203411)	23	NM_203411	92162	Hs.389669	NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
chr1.183892661.-	chr1	183892661	183892662	-	0	NA	"intron (NM_015149, intron 18 of 18)"	"intron (NM_015149, intron 18 of 18)"	-114202	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr8.101594953.+	chr8	101594953	101594954	+	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	-22939	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chr21.43198268.+	chr21	43198268	43198269	+	0	NA	Intergenic	Intergenic	-11019	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr8.144512840.+	chr8	144512840	144512841	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-238	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr9.139407029.-	chr9	139407029	139407030	-	0	NA	"intron (NM_017617, intron 15 of 33)"	"intron (NM_017617, intron 15 of 33)"	-7049	NR_039820	100616242		NR_039820		MIR4673	-	microRNA 4673	miscRNA
chr17.78977918.+	chr17	78977918	78977919	+	0	NA	Intergenic	CpG	12277	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr17.45349571.+	chr17	45349571	45349572	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18363	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr7.1286202.+	chr7	1286202	1286203	+	0	NA	Intergenic	CpG	13548	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr2.16600697.+	chr2	16600697	16600698	+	0	NA	Intergenic	AluY|SINE|Alu	246437	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	"family with sequence similarity 49, member A"	protein-coding
chr11.69453719.+	chr11	69453719	69453720	+	0	NA	Intergenic	CpG	-2154	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr2.202898653.+	chr2	202898653	202898654	+	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	-657	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr5.1038034.-	chr5	1038034	1038035	-	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	-25055	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr19.11043329.+	chr19	11043329	11043330	+	0	NA	Intergenic	AluSg4|SINE|Alu	3905	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr6.141000368.-	chr6	141000368	141000369	-	0	NA	Intergenic	AluY|SINE|Alu	4583	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr7.139872216.-	chr7	139872216	139872217	-	0	NA	"intron (NM_030647, intron 1 of 19)"	AluY|SINE|Alu	-4525	NM_030647	80853	Hs.308710	NM_030647	ENSG00000006459	JHDM1D	KDM7A	jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)	protein-coding
chr6.46742399.-	chr6	46742399	46742400	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18695	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr22.50987293.-	chr22	50987293	50987294	-	0	NA	"exon (NM_138433, exon 1 of 1)"	"exon (NM_138433, exon 1 of 1)"	-831	NM_138433	113730	Hs.137007	NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
chr5.52096024.+	chr5	52096024	52096025	+	0	NA	"5' UTR (NM_015946, exon 2 of 3)"	"5' UTR (NM_015946, exon 2 of 3)"	11888	NM_181501	3672	Hs.644352	NM_181501		ITGA1	CD49a|VLA1	"integrin, alpha 1"	protein-coding
chr2.54494029.+	chr2	54494029	54494030	+	0	NA	"intron (NM_138448, intron 3 of 3)"	AluY|SINE|Alu	-10620	NM_001003937	388951	Hs.620508	NM_001003937	ENSG00000178021	TSPYL6	-	TSPY-like 6	protein-coding
chr1.150488266.+	chr1	150488266	150488267	+	0	NA	promoter-TSS (NR_051960)	promoter-TSS (NR_051960)	33	NR_051960	100874054	Hs.576460	NR_051960	ENSG00000228126	LINC00568	ncRNA-a1	long intergenic non-protein coding RNA 568	miscRNA
chr8.82599890.+	chr8	82599890	82599891	+	0	NA	Intergenic	AluY|SINE|Alu	-1301	NM_001144879	3612	Hs.656694	NM_001144878		IMPA1	IMP|IMPA	inositol(myo)-1(or 4)-monophosphatase 1	protein-coding
chr19.19300094.-	chr19	19300094	19300095	-	0	NA	"intron (NR_027307, intron 1 of 12)"	L2a|LINE|L2	2914	NM_003721	8625	Hs.296776	NM_003721	ENSG00000064490	RFXANK	ANKRA1|BLS|F14150_1|RFX-B	regulatory factor X-associated ankyrin-containing protein	protein-coding
chr2.10127177.+	chr2	10127177	10127178	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSz6|SINE|Alu	35385	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr4.784445.-	chr4	784445	784446	-	0	NA	"intron (NM_006651, intron 3 of 3)"	"intron (NM_006651, intron 3 of 3)"	8809	NR_036511	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	miscRNA
chr8.81337211.+	chr8	81337211	81337212	+	0	NA	Intergenic	AluSx1|SINE|Alu	-60643	NM_001277145	65986	Hs.709604	NM_001105539	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
chr3.9459304.-	chr3	9459304	9459305	-	0	NA	"intron (NM_001080517, intron 1 of 22)"	AluY|SINE|Alu	-19901	NM_001080517	55209	Hs.288164	NM_001080517	ENSG00000168137	SETD5	-	SET domain containing 5	protein-coding
chr7.56109471.-	chr7	56109471	56109472	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9797	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chrM.2915.+	chrM	2915	2916	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.443586.-	chr16	443586	443587	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3606	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr17.37768963.+	chr17	37768963	37768964	+	0	NA	Intergenic	Intergenic	-4788	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr15.80218638.+	chr15	80218638	80218639	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2542	NR_037652	400410	Hs.729127	NM_001100879	ENSG00000180953	ST20	HCCS-1	suppressor of tumorigenicity 20	protein-coding
chr1.40073624.+	chr1	40073624	40073625	+	0	NA	Intergenic	AluY|SINE|Alu	-31103	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chrX.141491653.-	chrX	141491653	141491654	-	0	NA	Intergenic	AluY|SINE|Alu	198577	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr5.133831555.-	chr5	133831555	133831556	-	0	NA	Intergenic	AluY|SINE|Alu	30243	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr19.1943069.+	chr19	1943069	1943070	+	0	NA	"intron (NM_001319, intron 1 of 11)"	"intron (NM_001319, intron 1 of 11)"	1908	NM_001319	1455	Hs.651905	NM_001319	ENSG00000133275	CSNK1G2	CK1g2	"casein kinase 1, gamma 2"	protein-coding
chr12.48975222.-	chr12	48975222	48975223	-	0	NA	Intergenic	AluY|SINE|Alu	11393	NM_002289	3906	Hs.72938	NM_002289	ENSG00000167531	LALBA	-	"lactalbumin, alpha-"	protein-coding
chr1.6094732.+	chr1	6094732	6094733	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	384	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr5.22207055.+	chr5	22207055	22207056	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64594	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr9.11197031.-	chr9	11197031	11197032	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584308	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr9.136900807.+	chr9	136900807	136900808	+	0	NA	"intron (NM_007371, intron 10 of 11)"	"intron (NM_007371, intron 10 of 11)"	10246	NR_015427	266655	Hs.654869	NR_002800		LINC00094	LP2477|NCRNA00094|bA374P20.3	long intergenic non-protein coding RNA 94	miscRNA
chr17.907881.-	chr17	907881	907882	-	0	NA	"non-coding (NR_046393, exon 18 of 18)"	"non-coding (NR_046393, exon 18 of 18)"	-7524	NM_013337	29928	Hs.592108	NM_013337	ENSG00000177370	TIMM22	TEX4|TIM22	translocase of inner mitochondrial membrane 22 homolog (yeast)	protein-coding
chr12.117737167.-	chr12	117737167	117737168	-	0	NA	"intron (NM_000620, intron 3 of 28)"	AluY|SINE|Alu	-5690	NM_001204213	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr17.422325.+	chr17	422325	422326	+	0	NA	"3' UTR (NM_001128159, exon 22 of 22)"	"3' UTR (NM_001128159, exon 22 of 22)"	-126594	NM_182705	359845	Hs.741149	NM_182705	ENSG00000183688	FAM101B	-	"family with sequence similarity 101, member B"	protein-coding
chr7.36192827.-	chr7	36192827	36192828	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	9	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr17.26336753.+	chr17	26336753	26336754	+	0	NA	Intergenic	AluSz|SINE|Alu	-32935	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr3.183872510.+	chr3	183872510	183872511	+	0	NA	promoter-TSS (NM_004423)	promoter-TSS (NM_004423)	-774	NM_004423	1857	Hs.388116	NM_004423	ENSG00000161202	DVL3	-	"dishevelled, dsh homolog 3 (Drosophila)"	protein-coding
chr17.77345819.-	chr17	77345819	77345820	-	0	NA	"intron (NM_001082575, intron 2 of 14)"	"intron (NM_001082575, intron 2 of 14)"	-166411	NM_001082575	146713	Hs.135229	NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	"RNA binding protein, fox-1 homolog (C. elegans) 3"	protein-coding
chr2.43254075.-	chr2	43254075	43254076	-	0	NA	Intergenic	Intergenic	-199670	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr8.56889776.-	chr8	56889776	56889777	-	0	NA	"intron (NM_002350, intron 10 of 12)"	"intron (NM_002350, intron 10 of 12)"	-96684	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr5.141016842.-	chr5	141016842	141016843	-	0	NA	promoter-TSS (NM_003883)	promoter-TSS (NM_003883)	-325	NM_001130029	285613	Hs.120094	NM_001130029	ENSG00000164620	RELL2	C5orf16	RELT-like 2	protein-coding
chr11.74394528.-	chr11	74394528	74394529	-	0	NA	Intergenic	CpG	-36854	NR_039845	100616402		NR_039845		MIR4696	-	microRNA 4696	miscRNA
chr2.159651772.+	chr2	159651772	159651773	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-57	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr1.102295591.+	chr1	102295591	102295592	+	0	NA	"intron (NM_058170, intron 3 of 5)"	AluY|SINE|Alu	-41976	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	"DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5"	pseudo
chr13.66584755.+	chr13	66584755	66584756	+	0	NA	Intergenic	AluY|SINE|Alu	-814546	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr19.3068358.-	chr19	3068358	3068359	-	0	NA	Intergenic	Intergenic	5394	NM_198969	166	Hs.515053	NM_001130	ENSG00000104964	AES	AES-1|AES-2|ESP1|GRG|GRG5|TLE5	amino-terminal enhancer of split	protein-coding
chr17.12756017.+	chr17	12756017	12756018	+	0	NA	"intron (NM_014859, intron 1 of 20)"	AluY|SINE|Alu	63188	NM_014859	9912	Hs.499758	NM_014859	ENSG00000006740	ARHGAP44	NPC-A-10|RICH2	Rho GTPase activating protein 44	protein-coding
chr22.41521455.+	chr22	41521455	41521456	+	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	32841	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr16.194628.+	chr16	194628	194629	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5931	NM_001243249	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr2.52338200.-	chr2	52338200	52338201	-	0	NA	Intergenic	AluY|SINE|Alu	1078526	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chrX.133565052.+	chrX	133565052	133565053	+	0	NA	Intergenic	AluSp|SINE|Alu	-29123	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr8.41166062.-	chr8	41166062	41166063	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-928	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr15.41613117.-	chr15	41613117	41613118	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11702	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr22.22550491.-	chr22	22550491	22550492	-	0	NA	Intergenic	Intergenic	48709	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr11.1122316.-	chr11	1122316	1122317	-	0	NA	Intergenic	Intergenic	-47441	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr11.71230044.-	chr11	71230044	71230045	-	0	NA	Intergenic	CpG	8269	NM_001012503	440050	Hs.710675	NM_001012503	ENSG00000244411	KRTAP5-7	KRTAP5-3|KRTAP5.7	keratin associated protein 5-7	protein-coding
chr5.178157386.-	chr5	178157386	178157387	-	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	-317	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr6.149638279.-	chr6	149638279	149638280	-	0	NA	Intergenic	CpG	1157	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr1.32815420.+	chr1	32815420	32815421	+	0	NA	Intergenic	AluY|SINE|Alu	12424	NM_001167676	100128071	Hs.660539	NM_001167676	ENSG00000225828	FAM229A	-	"family with sequence similarity 229, member A"	protein-coding
chr3.49406330.+	chr3	49406330	49406331	+	0	NA	"intron (NM_001664, intron 2 of 4)"	AluY|SINE|Alu	-10539	NM_000581	2876	Hs.76686	NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
chr8.140693645.+	chr8	140693645	140693646	+	0	NA	"intron (NM_016601, intron 1 of 2)"	"intron (NM_016601, intron 1 of 2)"	21654	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr2.73402910.-	chr2	73402910	73402911	-	0	NA	Intergenic	CpG	26476	NM_001134462	344022	Hs.694384	NM_001134462		NOTO	-	notochord homeobox	protein-coding
chr19.1663574.-	chr19	1663574	1663575	-	0	NA	Intergenic	AluSp|SINE|Alu	11246	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr7.132214518.+	chr7	132214518	132214519	+	0	NA	"intron (NM_181775, intron 2 of 4)"	AluY|SINE|Alu	46805	NM_020911	91584	Hs.511454	NM_001105543	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
chr22.22259559.-	chr22	22259559	22259560	-	0	NA	Intergenic	AluSq2|SINE|Alu	37589	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr5.176075321.-	chr5	176075321	176075322	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-933	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr4.989224.-	chr4	989224	989225	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	2000	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr10.122148852.+	chr10	122148852	122148853	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67614	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr4.41386479.+	chr4	41386479	41386480	+	0	NA	"intron (NM_001112717, intron 1 of 25)"	AluY|SINE|Alu	23675	NM_001112718	22998	Hs.335163	NM_001112717	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
chr20.62679791.+	chr20	62679791	62679792	+	0	NA	"exon (NM_018419, exon 2 of 2)"	"exon (NM_018419, exon 2 of 2)"	1188	NM_018419	54345	Hs.8619	NM_018419	ENSG00000203883	SOX18	HLTS	SRY (sex determining region Y)-box 18	protein-coding
chr9.137588874.+	chr9	137588874	137588875	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55222	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr2.202046024.+	chr2	202046024	202046025	+	0	NA	Intergenic	AluSz|SINE|Alu	-1597	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr20.36067895.+	chr20	36067895	36067896	+	0	NA	Intergenic	Intergenic	-81712	NM_005386	4826	Hs.504703	NM_005386	ENSG00000053438	NNAT	Peg5	neuronatin	protein-coding
chr13.66584753.-	chr13	66584753	66584754	-	0	NA	Intergenic	AluY|SINE|Alu	814548	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr18.29434818.-	chr18	29434818	29434819	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88273	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr7.158670991.-	chr7	158670991	158670992	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21722	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr6.143227026.-	chr6	143227026	143227027	-	0	NA	"intron (NM_006734, intron 1 of 9)"	AluSz6|SINE|Alu	-39312	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chr1.60870844.-	chr1	60870844	60870845	-	0	NA	Intergenic	AluYa5|SINE|Alu	331402	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chr8.7414171.+	chr8	7414171	7414172	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2455	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr3.194706075.-	chr3	194706075	194706076	-	0	NA	Intergenic	Intergenic	-276925	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	miscRNA
chr2.178129404.-	chr2	178129404	178129405	-	0	NA	promoter-TSS (NM_001145412)	promoter-TSS (NM_001145412)	-455	NM_006164	4780	Hs.744006	NM_001145412	ENSG00000116044	NFE2L2	NRF2	nuclear factor (erythroid-derived 2)-like 2	protein-coding
chr19.33554709.+	chr19	33554709	33554710	+	0	NA	"intron (NM_033103, intron 1 of 14)"	GC_rich|Low_complexity|Low_complexity	1115	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr10.28821900.+	chr10	28821900	28821901	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	478	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr2.170666415.+	chr2	170666415	170666416	+	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	11093	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr4.149686294.+	chr4	149686294	149686295	+	0	NA	Intergenic	AluJb|SINE|Alu	-322622	NM_001166104	4306	Hs.163924	NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	"nuclear receptor subfamily 3, group C, member 2"	protein-coding
chr19.21789926.-	chr19	21789926	21789927	-	0	NA	Intergenic	SVA_D|Other|Other	-101489	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr4.26862512.-	chr4	26862512	26862513	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-199	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr14.103988565.-	chr14	103988565	103988566	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-631	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr16.77246827.-	chr16	77246827	77246828	-	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	-13478	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr3.123987823.+	chr3	123987823	123987824	+	0	NA	"exon (NM_003947, exon 5 of 34)"	"exon (NM_003947, exon 5 of 34)"	136047	NR_049798	100847021		NR_049798		MIR5002	-	microRNA 5002	miscRNA
chr7.1542250.+	chr7	1542250	1542251	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1768	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr9.38705482.-	chr9	38705482	38705483	-	0	NA	Intergenic	AluY|SINE|Alu	-84397	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr12.129892179.-	chr12	129892179	129892180	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496033	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr1.78230573.+	chr1	78230573	78230574	+	0	NA	Intergenic	AluSz|SINE|Alu	-5009	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr16.67985908.+	chr16	67985908	67985909	+	0	NA	"exon (NM_001145962, exon 7 of 23)"	"exon (NM_001145962, exon 7 of 23)"	-7893	NM_000229	3931	Hs.387239	NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
chr3.128362570.-	chr3	128362570	128362571	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7149	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr22.46368238.+	chr22	46368238	46368239	+	0	NA	"intron (NM_058238, intron 1 of 3)"	CpG	4770	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr13.111268324.+	chr13	111268324	111268325	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	393	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr12.113601052.-	chr12	113601052	113601053	-	0	NA	"exon (NM_001111322, exon 16 of 20)"	"exon (NM_001111322, exon 16 of 20)"	-13389	NM_001144872	387885	Hs.486856	NM_001144872	ENSG00000186710	CCDC42B	-	coiled-coil domain containing 42B	protein-coding
chrX.7012491.+	chrX	7012491	7012492	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53410	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr9.137200965.+	chr9	137200965	137200966	+	0	NA	Intergenic	Intergenic	-17351	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr1.3560986.-	chr1	3560986	3560987	-	0	NA	"intron (NM_017818, intron 3 of 11)"	CpG	-5685	NM_017818	49856	Hs.31714	NM_017818	ENSG00000116213	WRAP73	WDR8	"WD repeat containing, antisense to TP73"	protein-coding
chr22.49785338.+	chr22	49785338	49785339	+	0	NA	Intergenic	Intergenic	265852	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr12.34501146.-	chr12	34501146	34501147	-	0	NA	Intergenic	GSATII|Satellite|centr	-325930	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.74880321.-	chr2	74880321	74880322	-	0	NA	Intergenic	AluYg6|SINE|Alu	1034	NM_004263	10505	Hs.25887	NM_001271661	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F"	protein-coding
chr1.32559991.+	chr1	32559991	32559992	+	0	NA	"intron (NM_018056, intron 6 of 8)"	AluSx4|SINE|Alu	-13653	NM_012316	23633	Hs.711019	NM_012316	ENSG00000025800	KPNA6	IPOA7|KPNA7	karyopherin alpha 6 (importin alpha 7)	protein-coding
chr17.26336764.-	chr17	26336764	26336765	-	0	NA	Intergenic	AluSz|SINE|Alu	32924	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr16.82671326.+	chr16	82671326	82671327	+	0	NA	"intron (NM_001220491, intron 1 of 4)"	AluY|SINE|Alu	10927	NM_001220488	1012	Hs.661776	NM_001220488	ENSG00000140945	CDH13	CDHH|P105	"cadherin 13, H-cadherin (heart)"	protein-coding
chr7.13329406.+	chr7	13329406	13329407	+	0	NA	Intergenic	AluY|SINE|Alu	602495	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr13.21644853.-	chr13	21644853	21644854	-	0	NA	Intergenic	AluSx|SINE|Alu	9131	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr7.66093732.+	chr7	66093732	66093733	+	0	NA	promoter-TSS (NM_001167961)	promoter-TSS (NM_001167961)	-136	NM_153033	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr12.121330511.-	chr12	121330511	121330512	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluY|SINE|Alu	-11644	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr3.9398181.+	chr3	9398181	9398182	+	0	NA	Intergenic	AluY|SINE|Alu	-6536	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr1.32122156.+	chr1	32122156	32122157	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11318	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr17.79611149.-	chr17	79611149	79611150	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1800	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr8.13979553.+	chr8	13979553	13979554	+	0	NA	"intron (NM_139167, intron 5 of 7)"	AluY|SINE|Alu	555201	NM_001007090	157773	Hs.104941	NM_001007090	ENSG00000164743	C8orf48	-	chromosome 8 open reading frame 48	protein-coding
chr21.32687761.+	chr21	32687761	32687762	+	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	243529	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr9.129229364.+	chr9	129229364	129229365	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56581	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr1.218505144.-	chr1	218505144	218505145	-	0	NA	"3' UTR (NM_016052, exon 5 of 5)"	"3' UTR (NM_016052, exon 5 of 5)"	13532	NM_003238	7042	Hs.133379	NM_001135599	ENSG00000092969	TGFB2	LDS4|TGF-beta2	"transforming growth factor, beta 2"	protein-coding
chr14.44126147.-	chr14	44126147	44126148	-	0	NA	Intergenic	AluSc|SINE|Alu	-850352	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr19.34958633.+	chr19	34958633	34958634	+	0	NA	"intron (NM_005499, intron 16 of 16)"	AluSx3|SINE|Alu	-14247	NM_001080436	126374	Hs.585010	NM_001080436		WTIP	-	Wilms tumor 1 interacting protein	protein-coding
chr4.344832.-	chr4	344832	344833	-	0	NA	"intron (NM_003441, intron 3 of 3)"	AluY|SINE|Alu	-13236	NM_003441	7700	Hs.654355	NM_003441		ZNF141	D4S90|pHZ-44	zinc finger protein 141	protein-coding
chr17.26550590.+	chr17	26550590	26550591	+	0	NA	Intergenic	SVA_F|Other|Other	-2999	NR_003064	23615	Hs.157195	NR_003064	ENSG00000237575	PYY2	-	"peptide YY, 2 (pseudogene)"	pseudo
chr9.36859978.-	chr9	36859978	36859979	-	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	-4327	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr11.69451971.-	chr11	69451971	69451972	-	0	NA	Intergenic	CpG	3902	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr11.18743329.-	chr11	18743329	18743330	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4448	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr14.103021327.+	chr14	103021327	103021328	+	0	NA	Intergenic	Intergenic	15346	NR_036192	100422954		NR_036192	ENSG00000266015	MIR4309	-	microRNA 4309	miscRNA
chr9.101446116.-	chr9	101446116	101446117	-	0	NA	"intron (NM_005458, intron 1 of 18)"	AluY|SINE|Alu	-25363	NM_005458	9568	Hs.198612	NM_005458	ENSG00000136928	GABBR2	GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099	"gamma-aminobutyric acid (GABA) B receptor, 2"	protein-coding
chr5.65936255.+	chr5	65936255	65936256	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44079	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr8.3825575.-	chr8	3825575	3825576	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026753	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr1.9667757.+	chr1	9667757	9667758	+	0	NA	"exon (NM_001130924, exon 7 of 11)"	"exon (NM_001130924, exon 7 of 11)"	18825	NM_001010866	199953	Hs.706017	NM_001010866	ENSG00000188807	TMEM201	NET5	transmembrane protein 201	protein-coding
chr2.232202235.-	chr2	232202235	232202236	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25184	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr1.42522910.-	chr1	42522910	42522911	-	0	NA	Intergenic	AluY|SINE|Alu	21314	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr2.163473814.+	chr2	163473814	163473815	+	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	221443	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chrX.9366113.+	chrX	9366113	9366114	+	0	NA	Intergenic	AluY|SINE|Alu	-65222	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr5.178157710.-	chr5	178157710	178157711	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	7	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr5.17924813.+	chr5	17924813	17924814	+	0	NA	Intergenic	AluY|SINE|Alu	-537394	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr11.189871.+	chr11	189871	189872	+	0	NA	Intergenic	TAR1|Satellite|telo	-3209	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	"secretoglobin, family 1C, member 1-like"	protein-coding
chr21.37627706.-	chr21	37627706	37627707	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64781	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr22.38510758.-	chr22	38510758	38510759	-	0	NA	"intron (NM_001004426, intron 13 of 15)"	"intron (NM_001004426, intron 13 of 15)"	4082	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr8.143592673.+	chr8	143592673	143592674	+	0	NA	"intron (NM_001702, intron 17 of 29)"	CpG-26086	47296	NM_001702	575	Hs.194654	NM_001702	ENSG00000181790	BAI1	GDAIF	brain-specific angiogenesis inhibitor 1	protein-coding
chr12.53658251.-	chr12	53658251	53658252	-	0	NA	Intergenic	AluY|SINE|Alu	3832	NM_012291	9700	Hs.153479	NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies homolog 1 (S. cerevisiae)	protein-coding
chr4.133021240.+	chr4	133021240	133021241	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1049230	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr22.46936383.+	chr22	46936383	46936384	+	0	NA	Intergenic	AluSx|SINE|Alu	-3316	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr17.18575645.+	chr17	18575645	18575646	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	849	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr3.196466955.+	chr3	196466955	196466956	+	0	NA	"5' UTR (NM_002577, exon 1 of 15)"	"5' UTR (NM_002577, exon 1 of 15)"	227	NM_002577	5062	Hs.518530	NM_002577	ENSG00000180370	PAK2	PAK65|PAKgamma	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding
chrX.9366123.-	chrX	9366123	9366124	-	0	NA	Intergenic	AluY|SINE|Alu	65212	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr2.211170531.+	chr2	211170531	211170532	+	0	NA	"intron (NM_079420, intron 1 of 6)"	AluSp|SINE|Alu	-2192	NM_079422	4632	Hs.187338	NM_079420	ENSG00000168530	MYL1	MLC1F|MLC3F	"myosin, light chain 1, alkali; skeletal, fast"	protein-coding
chr3.68753641.-	chr3	68753641	68753642	-	0	NA	Intergenic	AluSx3|SINE|Alu	-228120	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chrX.40019660.+	chrX	40019660	40019661	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluY|SINE|Alu	16922	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr17.66332173.-	chr17	66332173	66332174	-	0	NA	"intron (NM_001267727, intron 2 of 11)"	AluSx1|SINE|Alu	-44537	NM_001267727	22901	Hs.437249	NM_001267727		ARSG	-	arylsulfatase G	protein-coding
chr15.56917202.+	chr15	56917202	56917203	+	0	NA	Intergenic	AluSq2|SINE|Alu	108585	NM_017661	54816	Hs.511477	NM_001002843	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
chr14.102109499.-	chr14	102109499	102109500	-	0	NA	Intergenic	AluY|SINE|Alu	-81811	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr22.34378908.-	chr22	34378908	34378909	-	0	NA	Intergenic	AluSx1|SINE|Alu	62492	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr22.51010991.+	chr22	51010991	51010992	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5515	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr3.20070767.-	chr3	20070767	20070768	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10757	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr15.23811451.+	chr15	23811451	23811452	+	0	NA	"exon (NM_005664, exon 1 of 1)"	"exon (NM_005664, exon 1 of 1)"	997	NM_005664	7681	Hs.679587	NM_005664	ENSG00000179455	MKRN3	D15S9|RNF63|ZFP127|ZNF127	makorin ring finger protein 3	protein-coding
chr17.47363969.+	chr17	47363969	47363970	+	0	NA	Intergenic	AluSx|SINE|Alu	38364	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr20.56274949.-	chr20	56274949	56274950	-	0	NA	"intron (NM_199171, intron 1 of 3)"	"intron (NM_199171, intron 1 of 3)"	9269	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	"prostate transmembrane protein, androgen induced 1"	protein-coding
chr8.27127613.+	chr8	27127613	27127614	+	0	NA	Intergenic	AluY|SINE|Alu	-11710	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr12.125122418.+	chr12	125122418	125122419	+	0	NA	Intergenic	Intergenic	-70408	NM_001206654	9612	Hs.137510	NM_001077261	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
chr20.57575070.+	chr20	57575070	57575071	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7239	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr2.61306959.+	chr2	61306959	61306960	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13596	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr15.76627322.+	chr15	76627322	76627323	+	0	NA	Intergenic	AluSg|SINE|Alu	-1825	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr22.46932365.-	chr22	46932365	46932366	-	0	NA	"exon (NM_014246, exon 1 of 35)"	"exon (NM_014246, exon 1 of 35)"	-702	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chrX.133328824.+	chrX	133328824	133328825	+	0	NA	Intergenic	AluSg|SINE|Alu	-24516	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr8.143484272.-	chr8	143484272	143484273	-	0	NA	"intron (NM_145003, intron 1 of 13)"	CpG	-271	NM_145003	203062	Hs.370931	NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
chr20.32056514.-	chr20	32056514	32056515	-	0	NA	Intergenic	AluSx1|SINE|Alu	21414	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr2.120775592.-	chr2	120775592	120775593	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4807	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr20.2804840.-	chr20	2804840	2804841	-	0	NA	Intergenic	SVA_E|Other|Other	-7864	NM_001167670	100288797	Hs.664180	NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
chr8.19626691.-	chr8	19626691	19626692	-	0	NA	Intergenic	AluSx1|SINE|Alu	48227	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr11.68671241.+	chr11	68671241	68671242	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	62	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr3.188566645.-	chr3	188566645	188566646	-	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	323118	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr15.75019229.+	chr15	75019229	75019230	+	0	NA	Intergenic	CpG	-1352	NM_000499	1543	Hs.72912	NM_000499	ENSG00000140465	CYP1A1	AHH|AHRR|CP11|CYP1|P1-450|P450-C|P450DX	"cytochrome P450, family 1, subfamily A, polypeptide 1"	protein-coding
chr1.211688767.-	chr1	211688767	211688768	-	0	NA	Intergenic	CpG	22508	NM_183059	343035	Hs.632495	NM_001164688	ENSG00000198570	RD3	C1orf36|LCA12	retinal degeneration 3	protein-coding
chr5.17924684.-	chr5	17924684	17924685	-	0	NA	Intergenic	AluY|SINE|Alu	537265	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr5.133831536.+	chr5	133831536	133831537	+	0	NA	Intergenic	AluY|SINE|Alu	-30262	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr11.64661102.-	chr11	64661102	64661103	-	0	NA	TTS (NM_015104)	TTS (NM_015104)	2191	NR_029829	406970		NR_029829	ENSG00000207596	MIR194-2	MIRN194-2	microRNA 194-2	miscRNA
chr8.144512796.-	chr8	144512796	144512797	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	194	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr10.134216460.-	chr10	134216460	134216461	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5758	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr8.43413766.-	chr8	43413766	43413767	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266181	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr5.141303565.-	chr5	141303565	141303566	-	0	NA	"intron (NM_014773, intron 1 of 11)"	CpG	-180	NM_014773	9812	Hs.210532	NM_001142603	ENSG00000081791	KIAA0141	DELE	KIAA0141	protein-coding
chr19.17836935.-	chr19	17836935	17836936	-	0	NA	"exon (NM_018174, exon 5 of 7)"	"exon (NM_018174, exon 5 of 7)"	-6632	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chr1.114695807.-	chr1	114695807	114695808	-	0	NA	promoter-TSS (NM_205848)	promoter-TSS (NM_205848)	-665	NM_001270805	148281	Hs.736999	NM_001270805	ENSG00000134207	SYT6	sytVI	synaptotagmin VI	protein-coding
chr2.20424064.-	chr2	20424064	20424065	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-863	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr19.47682445.+	chr19	47682445	47682446	+	0	NA	"intron (NM_001145713, intron 6 of 6)"	AluY|SINE|Alu	-47754	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	-	microRNA 3190	miscRNA
chr12.49076431.+	chr12	49076431	49076432	+	0	NA	promoter-TSS (NM_017822)	promoter-TSS (NM_017822)	-396	NM_017822	54934	Hs.505412	NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
chr7.62939974.-	chr7	62939974	62939975	-	0	NA	Intergenic	AluYf4|SINE|Alu	80555	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr2.241780293.+	chr2	241780293	241780294	+	0	NA	Intergenic	Intergenic	-20568	NM_001244008	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr16.87360667.+	chr16	87360667	87360668	+	0	NA	Intergenic	Intergenic	-9641	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr21.43699098.+	chr21	43699098	43699099	+	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	36608	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr2.115948299.+	chr2	115948299	115948300	+	0	NA	"intron (NM_001004360, intron 1 of 25)"	HERVIP10F-int|LTR|ERV1	28615	NM_001004360	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr6.166722248.+	chr6	166722248	166722249	+	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	-377	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr8.67617947.+	chr8	67617947	67617948	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluY|SINE|Alu	-6706	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr13.66584746.-	chr13	66584746	66584747	-	0	NA	Intergenic	AluY|SINE|Alu	814555	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr5.32689668.-	chr5	32689668	32689669	-	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	21075	NM_001204376	4883	Hs.619466	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
chr22.38498767.-	chr22	38498767	38498768	-	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	-7909	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr3.32863318.-	chr3	32863318	32863319	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3808	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chrX.132930094.+	chrX	132930094	132930095	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189579	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr19.7587588.-	chr19	7587588	7587589	-	0	NA	promoter-TSS (NM_020533)	promoter-TSS (NM_020533)	-92	NM_020533	57192	Hs.631858	NM_020533	ENSG00000090674	MCOLN1	MG-2|ML4|MLIV|MST080|TRP-ML1|TRPM-L1|TRPML1	mucolipin 1	protein-coding
chr2.85638948.-	chr2	85638948	85638949	-	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	1128	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr1.9796070.+	chr1	9796070	9796071	+	0	NA	"exon (NM_001009566, exon 12 of 19)"	"exon (NM_001009566, exon 12 of 19)"	-81426	NR_027045	644997	Hs.568595	NM_001045478	ENSG00000179840	C1orf200	-	chromosome 1 open reading frame 200	miscRNA
chr7.53587095.-	chr7	53587095	53587096	-	0	NA	Intergenic	AluY|SINE|Alu	-292529	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr1.20923692.+	chr1	20923692	20923693	+	0	NA	"intron (NM_001785, intron 1 of 3)"	AluY|SINE|Alu	8248	NM_001785	978	Hs.466910	NM_001785	ENSG00000158825	CDA	CDD	cytidine deaminase	protein-coding
chr17.38356710.-	chr17	38356710	38356711	-	0	NA	Intergenic	AluY|SINE|Alu	18864	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr7.5572232.+	chr7	5572232	5572233	+	0	NA	Intergenic	Intergenic	-2000	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr4.65344013.+	chr4	65344013	65344014	+	0	NA	Intergenic	AluY|SINE|Alu	-68835	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr11.1710909.+	chr11	1710909	1710910	+	0	NA	"intron (NM_053005, intron 1 of 5)"	"intron (NM_053005, intron 1 of 5)"	-4050	NR_026642	100132464	Hs.117797	NR_026642	ENSG00000205865	FAM99B	-	"family with sequence similarity 99, member B (non-protein coding)"	miscRNA
chr12.131419283.+	chr12	131419283	131419284	+	0	NA	Intergenic	AluSz|SINE|Alu	-19169	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr3.126207225.-	chr3	126207225	126207226	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12463	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr17.46186990.-	chr17	46186990	46186991	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2043	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr21.40984664.-	chr21	40984664	40984665	-	0	NA	promoter-TSS (NR_026543)	promoter-TSS (NR_026543)	-85	NR_026543	114041	Hs.375120	NM_153754	ENSG00000184809	C21orf88	-	chromosome 21 open reading frame 88	miscRNA
chr11.72498604.+	chr11	72498604	72498605	+	0	NA	"intron (NM_006645, intron 1 of 6)"	"intron (NM_006645, intron 1 of 6)"	4029	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	miscRNA
chr2.171572854.+	chr2	171572854	171572855	+	0	NA	"exon (NM_001003845, exon 2 of 2)"	"exon (NM_001003845, exon 2 of 2)"	997	NM_001003845	389058	Hs.368802	NM_001003845	ENSG00000204335	SP5	-	Sp5 transcription factor	protein-coding
chr8.3500971.+	chr8	3500971	3500972	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351357	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr14.71276141.-	chr14	71276141	71276142	-	0	NA	promoter-TSS (NM_033141)	promoter-TSS (NM_033141)	253	NM_033141	4293	Hs.593542	NM_033141		MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
chr22.31477318.-	chr22	31477318	31477319	-	0	NA	promoter-TSS (NM_006932)	promoter-TSS (NM_006932)	-36	NM_134270	6525	Hs.149098	NM_001207017	ENSG00000183963	SMTN	-	smoothelin	protein-coding
chr2.74880334.-	chr2	74880334	74880335	-	0	NA	Intergenic	AluYg6|SINE|Alu	1021	NM_004263	10505	Hs.25887	NM_001271661	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F"	protein-coding
chr12.111714729.-	chr12	111714729	111714730	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92196	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr3.48028094.-	chr3	48028094	48028095	-	0	NA	"intron (NM_002375, intron 2 of 18)"	AluSz6|SINE|Alu	-102675	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr12.121338279.+	chr12	121338279	121338280	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3876	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr1.236252204.-	chr1	236252204	236252205	-	0	NA	Intergenic	AluY|SINE|Alu	23723	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chrX.69654753.+	chrX	69654753	69654754	+	0	NA	Intergenic	Intergenic	-9952	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr16.3292258.+	chr16	3292258	3292259	+	0	NA	"3' UTR (NM_000243, exon 10 of 10)"	"3' UTR (NM_000243, exon 10 of 10)"	-6801	NM_001145446	7752	Hs.632222	NM_001145446	ENSG00000010539	ZNF200	-	zinc finger protein 200	protein-coding
chr2.237068258.+	chr2	237068258	237068259	+	0	NA	Intergenic	CpG	8394	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.132978670.-	chr2	132978670	132978671	-	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	-35983	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr16.87799859.+	chr16	87799859	87799860	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-261	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr7.5557978.+	chr7	5557978	5557979	+	0	NA	Intergenic	AluYc|SINE|Alu	-4579	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chrX.18849787.+	chrX	18849787	18849788	+	0	NA	Intergenic	AluY|SINE|Alu	-58627	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr5.1137806.-	chr5	1137806	1137807	-	0	NA	Intergenic	Intergenic	25634	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr18.19630117.+	chr18	19630117	19630118	+	0	NA	Intergenic	AluY|SINE|Alu	-119287	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr19.45454749.+	chr19	45454749	45454750	+	0	NA	Intergenic	Intergenic	-3093	NR_040007	1209	Hs.444441	NM_001199468	ENSG00000104853	CLPTM1	-	cleft lip and palate associated transmembrane protein 1	protein-coding
chr7.36403683.-	chr7	36403683	36403684	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	"intron (NM_001100425, intron 2 of 6)"	-3099	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr6.123144180.+	chr6	123144180	123144181	+	0	NA	Intergenic	AluY|SINE|Alu	34209	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr7.2564616.+	chr7	2564616	2564617	+	0	NA	"intron (NM_001040167, intron 2 of 7)"	"intron (NM_001040167, intron 2 of 7)"	-2092	NR_039791	100616116		NR_039791		MIR4648	-	microRNA 4648	miscRNA
chr5.128196984.-	chr5	128196984	128196985	-	0	NA	Intergenic	AluYk4|SINE|Alu	104226	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr7.130956402.-	chr7	130956402	130956403	-	0	NA	"intron (NM_001145354, intron 2 of 18)"	AluSq|SINE|Alu	56193	NM_013255	4289	Hs.44693	NM_001145354	ENSG00000128585	MKLN1	TWA2	"muskelin 1, intracellular mediator containing kelch motifs"	protein-coding
chr4.177146932.+	chr4	177146932	177146933	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30110	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr3.164852026.-	chr3	164852026	164852027	-	0	NA	Intergenic	AluY|SINE|Alu	55743	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr16.22675582.-	chr16	22675582	22675583	-	0	NA	Intergenic	AluJr|SINE|Alu	54021	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr1.151573462.-	chr1	151573462	151573463	-	0	NA	Intergenic	SVA_E|Other|Other	11200	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr20.62108044.+	chr20	62108044	62108045	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4051	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr10.48324346.+	chr10	48324346	48324347	+	0	NA	Intergenic	Intergenic	-30743	NM_153034	118738	Hs.27788	NM_153034	ENSG00000165388	ZNF488	-	zinc finger protein 488	protein-coding
chr13.114762806.+	chr13	114762806	114762807	+	0	NA	"intron (NM_007368, intron 20 of 23)"	"intron (NM_007368, intron 20 of 23)"	-130842	NR_047495	100861555	Hs.353773	NR_047495	ENSG00000260910	LINC00565	-	long intergenic non-protein coding RNA 565	miscRNA
chr2.25758477.-	chr2	25758477	25758478	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114614	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr7.394769.+	chr7	394769	394770	+	0	NA	Intergenic	Intergenic	-24622	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr20.43040162.-	chr20	43040162	43040163	-	0	NA	"intron (NM_178850, intron 3 of 7)"	"intron (NM_178850, intron 3 of 7)"	-3402	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	miscRNA
chr15.94016043.+	chr15	94016043	94016044	+	0	NA	Intergenic	AluY|SINE|Alu	-383600	NM_020211	56963	Hs.271277	NM_001166283	ENSG00000182175	RGMA	RGM	"RGM domain family, member A"	protein-coding
chr5.133968953.-	chr5	133968953	133968954	-	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	420	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr7.1542289.+	chr7	1542289	1542290	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1729	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr1.2576569.+	chr1	2576569	2576570	+	0	NA	"intron (NM_001242672, intron 5 of 6)"	"intron (NM_001242672, intron 5 of 6)"	-12088	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr13.49426615.+	chr13	49426615	49426616	+	0	NA	Intergenic	AluSp|SINE|Alu	-123433	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr7.130418556.+	chr7	130418556	130418557	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	332	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr8.91013862.-	chr8	91013862	91013863	-	0	NA	"intron (NM_001359, intron 1 of 9)"	CpG	-282	NM_001359	1666	Hs.492212	NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	"2,4-dienoyl CoA reductase 1, mitochondrial"	protein-coding
chr2.182902229.+	chr2	182902229	182902230	+	0	NA	"intron (NR_048566, intron 2 of 5)"	AluSc|SINE|Alu	51678	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	"protein phosphatase 1, regulatory (inhibitor) subunit 1C"	protein-coding
chr19.3971095.+	chr19	3971095	3971096	+	0	NA	Intergenic	CpG	-1269	NM_001348	1613	Hs.631844	NM_001348	ENSG00000167657	DAPK3	ZIP|ZIPK	death-associated protein kinase 3	protein-coding
chr15.91427622.+	chr15	91427622	91427623	+	0	NA	promoter-TSS (NM_002005)	promoter-TSS (NM_002005)	-43	NM_001143785	2242	Hs.7636	NM_001143783	ENSG00000182511	FES	FPS	feline sarcoma oncogene	protein-coding
chr19.1194433.+	chr19	1194433	1194434	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11365	NM_000455	6794	Hs.515005	NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
chr20.20772524.-	chr20	20772524	20772525	-	0	NA	Intergenic	LTR16A2|LTR|ERVL	79258	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr16.1123270.-	chr16	1123270	1123271	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-514	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr2.128430610.+	chr2	128430610	128430611	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2154	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr6.80035328.+	chr6	80035328	80035329	+	0	NA	Intergenic	L1PA4|LINE|L1	-90873	NM_004242	9324	Hs.77558	NM_001201362	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chr4.65343979.+	chr4	65343979	65343980	+	0	NA	Intergenic	AluY|SINE|Alu	-68801	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr6.12662856.-	chr6	12662856	12662857	-	0	NA	Intergenic	AluSg|SINE|Alu	54181	NM_001242648	221692	Hs.436996	NM_001242648		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
chr3.170641238.-	chr3	170641238	170641239	-	0	NA	Intergenic	SVA_C|Other|Other	14812	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr3.42642412.-	chr3	42642412	42642413	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-160	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr11.66512926.+	chr11	66512926	66512927	+	0	NA	"intron (NR_048553, intron 1 of 14)"	"intron (NR_048553, intron 1 of 14)"	719	NM_024650	79703	Hs.292088	NM_024650	ENSG00000173715	C11orf80	-	chromosome 11 open reading frame 80	protein-coding
chr19.46271185.+	chr19	46271185	46271186	+	0	NA	"intron (NM_175875, intron 1 of 2)"	CpG	1312	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
chrX.49682938.+	chrX	49682938	49682939	+	0	NA	Intergenic	AluSz|SINE|Alu	-4287	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr13.24099546.-	chr13	24099546	24099547	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	44963	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr16.50142555.+	chr16	50142555	50142556	+	0	NA	Intergenic	AluSz6|SINE|Alu	42674	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr9.95431866.+	chr9	95431866	95431867	+	0	NA	"intron (NM_022755, intron 1 of 12)"	CpG	681	NM_022755	64768	Hs.713775	NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	"inositol 1,3,4,5,6-pentakisphosphate 2-kinase"	protein-coding
chr6.151771580.-	chr6	151771580	151771581	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1736	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chrX.81762755.+	chrX	81762755	81762756	+	0	NA	Intergenic	AluY|SINE|Alu	-1000514	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr8.142138505.+	chr8	142138505	142138506	+	0	NA	promoter-TSS (NM_014957)	promoter-TSS (NM_014957)	-215	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN/MADD domain containing 3	protein-coding
chr19.292288.+	chr19	292288	292289	+	0	NA	promoter-TSS (NM_003712)	promoter-TSS (NM_003712)	-853	NM_003712	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr20.46019527.+	chr20	46019527	46019528	+	0	NA	Intergenic	AluY|SINE|Alu	-34053	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr14.97183880.+	chr14	97183880	97183881	+	0	NA	Intergenic	AluY|SINE|Alu	-79804	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr7.2943515.+	chr7	2943515	2943516	+	0	NA	Intergenic	Intergenic	-59556	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr20.32469619.-	chr20	32469619	32469620	-	0	NA	Intergenic	AluJb|SINE|Alu	-70509	NM_176812	128866	Hs.472471	NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
chr10.324340.-	chr10	324340	324341	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98406	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr14.95067808.-	chr14	95067808	95067809	-	0	NA	Intergenic	AluY|SINE|Alu	10906	NM_001085	12	Hs.710488	NM_001085	ENSG00000196136	SERPINA3	AACT|ACT|GIG25	"serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3"	protein-coding
chr16.28435265.+	chr16	28435265	28435266	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2510	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr7.129803713.-	chr7	129803713	129803714	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41625	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr17.37145997.+	chr17	37145997	37145998	+	0	NA	Intergenic	AluY|SINE|Alu	-22342	NM_001008777	494188	Hs.549536	NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
chr11.9243382.+	chr11	9243382	9243383	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43491	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr10.35559800.+	chr10	35559800	35559801	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23847	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr6.4780634.+	chr6	4780634	4780635	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3954	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr21.45959275.+	chr21	45959275	45959276	+	0	NA	"exon (NM_198691, exon 1 of 1)"	"exon (NM_198691, exon 1 of 1)"	803	NM_198691	386677	Hs.688631	NM_198691	ENSG00000215455	KRTAP10-1	KAP10.1|KAP18-1|KAP18.1|KRTAP10.1|KRTAP18-1|KRTAP18.1	keratin associated protein 10-1	protein-coding
chr16.632126.+	chr16	632126	632127	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7231	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chrX.69654665.+	chrX	69654665	69654666	+	0	NA	Intergenic	Intergenic	-10040	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr14.39018151.-	chr14	39018151	39018152	-	0	NA	Intergenic	AluYa5|SINE|Alu	292576	NM_175060	161198	Hs.525307	NM_175060	ENSG00000176435	CLEC14A	C14orf27|CEG1|EGFR-5	"C-type lectin domain family 14, member A"	protein-coding
chr13.21644838.-	chr13	21644838	21644839	-	0	NA	Intergenic	AluSx|SINE|Alu	9116	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chrM.16302.+	chrM	16302	16303	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr7.77127400.-	chr7	77127400	77127401	-	0	NA	Intergenic	AluY|SINE|Alu	39373	NM_002835	5782	Hs.61812	NM_001131008	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	"protein tyrosine phosphatase, non-receptor type 12"	protein-coding
chr19.7580983.-	chr19	7580983	7580984	-	0	NA	promoter-TSS (NM_018083)	promoter-TSS (NM_018083)	21	NM_018083	140467	Hs.133475	NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
chr18.13095643.+	chr18	13095643	13095644	+	0	NA	"exon (NM_032142, exon 35 of 45)"	"exon (NM_032142, exon 35 of 45)"	104282	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr16.16013180.-	chr16	16013180	16013181	-	0	NA	Intergenic	AluY|SINE|Alu	30254	NM_004996	4363	Hs.391464	NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	"ATP-binding cassette, sub-family C (CFTR/MRP), member 1"	protein-coding
chr9.6559756.+	chr9	6559756	6559757	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85936	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr5.170687214.+	chr5	170687214	170687215	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49074	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr19.36762836.+	chr19	36762836	36762837	+	0	NA	Intergenic	SST1|Satellite|centr	-39409	NR_029389	100134317	Hs.729610	NR_029389		LOC100134317	-	uncharacterized LOC100134317	miscRNA
chr16.89023325.-	chr16	89023325	89023326	-	0	NA	"intron (NM_005187, intron 1 of 11)"	"intron (NM_005187, intron 1 of 11)"	15717	NM_175931	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr5.1137719.+	chr5	1137719	1137720	+	0	NA	Intergenic	Intergenic	-25547	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr14.95067771.-	chr14	95067771	95067772	-	0	NA	Intergenic	AluY|SINE|Alu	10943	NM_001085	12	Hs.710488	NM_001085	ENSG00000196136	SERPINA3	AACT|ACT|GIG25	"serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3"	protein-coding
chr14.44877963.+	chr14	44877963	44877964	+	0	NA	Intergenic	AluY|SINE|Alu	98536	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr15.76627369.-	chr15	76627369	76627370	-	0	NA	Intergenic	AluSg|SINE|Alu	1778	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr3.53529695.+	chr3	53529695	53529696	+	0	NA	"intron (NM_001128840, intron 1 of 47)"	CpG-18602	619	NM_000720	776	Hs.476358	NM_000720	ENSG00000157388	CACNA1D	CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|SANDD	"calcium channel, voltage-dependent, L type, alpha 1D subunit"	protein-coding
chr22.47162098.-	chr22	47162098	47162099	-	0	NA	"intron (NM_014346, intron 1 of 12)"	AluY|SINE|Alu	-3580	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr7.150812736.-	chr7	150812736	150812737	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28910	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr19.36578438.-	chr19	36578438	36578439	-	0	NA	"intron (NM_173636, intron 13 of 31)"	AluSq|SINE|Alu	23667	NM_001270948	728361	Hs.143920	NM_001270948		OVOL3	-	ovo-like 3 (Drosophila)	protein-coding
chr15.41613148.-	chr15	41613148	41613149	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11671	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr14.23233386.+	chr14	23233386	23233387	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2345	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr5.675422.-	chr5	675422	675423	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18088	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr2.10733455.+	chr2	10733455	10733456	+	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	96658	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr18.19630087.+	chr18	19630087	19630088	+	0	NA	Intergenic	AluY|SINE|Alu	-119317	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr11.121920106.-	chr11	121920106	121920107	-	0	NA	Intergenic	AluSq2|SINE|Alu	-50446	NR_029671	406911		NR_029671	ENSG00000207971	MIR125B1	MIRN125B1	microRNA 125b-1	miscRNA
chr12.126371187.+	chr12	126371187	126371188	+	0	NA	Intergenic	AluY|SINE|Alu	96733	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chr12.121168040.+	chr12	121168040	121168041	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSg|SINE|Alu	4469	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr10.43393846.+	chr10	43393846	43393847	+	0	NA	Intergenic	CpG	-99165	NR_049836	100847014		NR_049836	ENSG00000263795	MIR5100	-	microRNA 5100	miscRNA
chr8.6812634.-	chr8	6812634	6812635	-	0	NA	Intergenic	AluSp|SINE|Alu	3513	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr3.42642402.+	chr3	42642402	42642403	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	170	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr3.28951363.-	chr3	28951363	28951364	-	0	NA	Intergenic	AluY|SINE|Alu	-334594	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr14.105158939.-	chr14	105158939	105158940	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2996	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr4.8161354.+	chr4	8161354	8161355	+	0	NA	promoter-TSS (NM_001130084)	promoter-TSS (NM_001130084)	-795	NM_001130088	84448	Hs.233404	NM_001130083	ENSG00000163995	ABLIM2	-	"actin binding LIM protein family, member 2"	protein-coding
chr1.145400426.-	chr1	145400426	145400427	-	0	NA	Intergenic	AluSq2|SINE|Alu	12765	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr10.73848180.+	chr10	73848180	73848181	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	351	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr16.2076756.-	chr16	2076756	2076757	-	0	NA	promoter-TSS (NM_001130012)	promoter-TSS (NM_001130012)	113	NM_001130012	9351	Hs.440896	NM_001130012	ENSG00000065054	SLC9A3R2	E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2"	protein-coding
chr7.157605504.-	chr7	157605504	157605505	-	0	NA	"intron (NM_130842, intron 11 of 21)"	"intron (NM_130842, intron 11 of 21)"	41773	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr2.134028761.+	chr2	134028761	134028762	+	0	NA	"intron (NM_207363, intron 4 of 19)"	AluY|SINE|Alu	297270	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
chr2.99347730.+	chr2	99347730	99347731	+	0	NA	promoter-TSS (NM_012214)	promoter-TSS (NM_012214)	-141	NM_012214	11320	Hs.177576	NM_001160154	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A"	protein-coding
chr3.125174737.-	chr3	125174737	125174738	-	0	NA	"intron (NR_073435, intron 10 of 12)"	AluY|SINE|Alu	-64321	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr6.64103936.+	chr6	64103936	64103937	+	0	NA	Intergenic	AluSx|SINE|Alu	-74054	NM_001143940	51557	Hs.149585	NM_001143940	ENSG00000146166	LGSN	GLULD1|LGS	"lengsin, lens protein with glutamine synthetase domain"	protein-coding
chr6.122006957.+	chr6	122006957	122006958	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250212	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr15.41539490.-	chr15	41539490	41539491	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16053	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr17.40316783.+	chr17	40316783	40316784	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9721	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr16.29940320.+	chr16	29940320	29940321	+	0	NA	Intergenic	AluSg|SINE|Alu	-2775	NM_178863	253980	Hs.534590	NM_178863	ENSG00000174943	KCTD13	PDIP1|POLDIP1|hBACURD1	potassium channel tetramerisation domain containing 13	protein-coding
chr3.9429721.+	chr3	9429721	9429722	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9453	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr9.138437863.+	chr9	138437863	138437864	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-122	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr12.116724254.+	chr12	116724254	116724255	+	0	NA	Intergenic	AluY|SINE|Alu	-9263	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr7.5610921.+	chr7	5610921	5610922	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21515	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr11.67140115.-	chr11	67140115	67140116	-	0	NA	"intron (NM_001166212, intron 1 of 2)"	CpG	-1091	NM_013246	23529	Hs.502977	NM_001166212	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin-like cytokine factor 1	protein-coding
chr12.6391357.-	chr12	6391357	6391358	-	0	NA	Intergenic	L2b|LINE|L2	28245	NM_018173	55200	Hs.631660	NM_001144856	ENSG00000008323	PLEKHG6	MyoGEF	"pleckstrin homology domain containing, family G (with RhoGef domain) member 6"	protein-coding
chr7.56442188.+	chr7	56442188	56442189	+	0	NA	Intergenic	Intergenic	73880	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr5.179383836.+	chr5	179383836	179383837	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-48980	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr3.61188817.+	chr3	61188817	61188818	+	0	NA	"intron (NM_001166243, intron 1 of 9)"	AluY|SINE|Alu	48316	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr9.83484.-	chr9	83484	83485	-	0	NA	Intergenic	SVA_E|Other|Other	-34933	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr7.1542239.+	chr7	1542239	1542240	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1779	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr17.57868962.-	chr17	57868962	57868963	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49665	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr5.68477054.+	chr5	68477054	68477055	+	0	NA	Intergenic	AluY|SINE|Alu	-8321	NM_022909	64946	Hs.631967	NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
chr3.32863288.+	chr3	32863288	32863289	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3778	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr19.2492355.+	chr19	2492355	2492356	+	0	NA	Intergenic	AluSz|SINE|Alu	16232	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr5.17207848.-	chr5	17207848	17207849	-	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	9084	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr6.70692612.+	chr6	70692612	70692613	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116164	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr3.196619075.+	chr3	196619075	196619076	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24348	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr9.108210401.-	chr9	108210401	108210402	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-76	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr20.17596009.+	chr20	17596009	17596010	+	0	NA	"intron (NM_004587, intron 23 of 24)"	"intron (NM_004587, intron 23 of 24)"	45410	NM_001011546	11034	Hs.705996	NM_001011546	ENSG00000125868	DSTN	ACTDP|ADF|bA462D18.2	destrin (actin depolymerizing factor)	protein-coding
chr20.57226297.+	chr20	57226297	57226298	+	0	NA	promoter-TSS (NM_003763)	promoter-TSS (NM_003763)	-12	NR_037943	8675	Hs.307913	NM_001001433	ENSG00000124222	STX16	SYN16	syntaxin 16	protein-coding
chr5.1494523.-	chr5	1494523	1494524	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29553	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr18.46501916.-	chr18	46501916	46501917	-	0	NA	Intergenic	CpG	24835	NM_001190821	4092	Hs.465087	NM_001190821	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
chr6.168395058.-	chr6	168395058	168395059	-	0	NA	Intergenic	AluSx|SINE|Alu	17439	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr18.11086418.+	chr18	11086418	11086419	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62343	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr13.72731954.+	chr13	72731954	72731955	+	0	NA	Intergenic	AluY|SINE|Alu	-290624	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr3.16153606.+	chr3	16153606	16153607	+	0	NA	Intergenic	AluY|SINE|Alu	-62578	NM_054110	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNT13|GALNT7|GALNTL2|PIH5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chr13.114899224.-	chr13	114899224	114899225	-	0	NA	Intergenic	Intergenic	1129	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr9.80376630.-	chr9	80376630	80376631	-	0	NA	"intron (NM_002072, intron 5 of 6)"	SVA_F|Other|Other	113398	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	"guanine nucleotide binding protein (G protein), alpha 14"	protein-coding
chr5.21484617.+	chr5	21484617	21484618	+	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	25028	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr1.214610012.+	chr1	214610012	214610013	+	0	NA	"intron (NM_005401, intron 3 of 18)"	AluSx1|SINE|Alu	115012	NM_005401	5784	Hs.193557	NM_005401		PTPN14	PEZ|PTP36	"protein tyrosine phosphatase, non-receptor type 14"	protein-coding
chr7.53196201.-	chr7	53196201	53196202	-	0	NA	Intergenic	AluY|SINE|Alu	-92852	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chrX.153657088.-	chrX	153657088	153657089	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-110	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr9.137288462.-	chr9	137288462	137288463	-	0	NA	"intron (NM_002957, intron 1 of 9)"	"intron (NM_002957, intron 1 of 9)"	-17205	NR_039816	100616236		NR_039816		MIR4669	-	microRNA 4669	miscRNA
chr17.48037712.+	chr17	48037712	48037713	+	0	NA	Intergenic	MIR|SINE|MIR	-8850	NM_138281	1748	Hs.591167	NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
chr22.51144105.+	chr22	51144105	51144106	+	0	NA	"intron (NM_033517, intron 16 of 21)"	"intron (NM_033517, intron 16 of 21)"	31035	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr2.43254198.-	chr2	43254198	43254199	-	0	NA	Intergenic	Intergenic	-199547	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr7.56109632.+	chr7	56109632	56109633	+	0	NA	"intron (NM_004577, intron 1 of 7)"	"intron (NM_004577, intron 1 of 7)"	9636	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr1.93761585.+	chr1	93761585	93761586	+	0	NA	Intergenic	AluSz6|SINE|Alu	49783	NR_034089	100131564	Hs.732666	NR_034089		LOC100131564	-	uncharacterized LOC100131564	miscRNA
chr22.29711967.-	chr22	29711967	29711968	-	0	NA	promoter-TSS (NM_006477)	promoter-TSS (NM_006477)	222	NM_006477	10633	Hs.73088	NM_001007279	ENSG00000100276	RASL10A	RRP22	"RAS-like, family 10, member A"	protein-coding
chr7.95234850.-	chr7	95234850	95234851	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8925	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr20.46387692.-	chr20	46387692	46387693	-	0	NA	"intron (NM_198596, intron 1 of 20)"	"intron (NM_198596, intron 1 of 20)"	-27116	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr5.115909106.+	chr5	115909106	115909107	+	0	NA	"intron (NM_020796, intron 1 of 18)"	CpG	1445	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr4.42658255.-	chr4	42658255	42658256	-	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	-867	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr20.732313.+	chr20	732313	732314	+	0	NA	Intergenic	AluSg|SINE|Alu	16915	NM_033409	113278	Hs.283865	NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	"solute carrier family 52, riboflavin transporter, member 3"	protein-coding
chr13.111268095.+	chr13	111268095	111268096	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	164	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr18.67270870.-	chr18	67270870	67270871	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202586	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr6.53738374.-	chr6	53738374	53738375	-	0	NA	"intron (NM_018214, intron 2 of 13)"	AluY|SINE|Alu	-78596	NM_018214	55227	Hs.732252	NM_025168	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
chr22.50876250.+	chr22	50876250	50876251	+	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	37214	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr17.37768947.+	chr17	37768947	37768948	+	0	NA	Intergenic	Intergenic	-4772	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr7.150812744.+	chr7	150812744	150812745	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28918	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr3.16159889.+	chr3	16159889	16159890	+	0	NA	Intergenic	AluSx|SINE|Alu	-56295	NM_054110	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNT13|GALNT7|GALNTL2|PIH5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chr8.27127617.+	chr8	27127617	27127618	+	0	NA	Intergenic	AluY|SINE|Alu	-11714	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr5.123857453.+	chr5	123857453	123857454	+	0	NA	Intergenic	LTR12C|LTR|ERV1	223352	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
chr10.12781582.-	chr10	12781582	12781583	-	0	NA	"intron (NM_020397, intron 3 of 9)"	AluSx3|SINE|Alu	93551	NR_027322	283070	Hs.600547	NR_027322		LOC283070	-	uncharacterized LOC283070	miscRNA
chr7.5570042.+	chr7	5570042	5570043	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	190	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr16.30641624.+	chr16	30641624	30641625	+	0	NA	Intergenic	AluJb|SINE|Alu	-19528	NR_073481	115509	Hs.454685	NM_138447		ZNF689	TIPUH1	zinc finger protein 689	protein-coding
chr21.30947168.+	chr21	30947168	30947169	+	0	NA	"intron (NM_175611, intron 13 of 15)"	AluY|SINE|Alu	-21192	NR_033368	100379661	Hs.659368	NR_033368	ENSG00000156273	GRIK1-AS2	C21orf41|NCRNA00258	GRIK1 antisense RNA 2	miscRNA
chr9.26387242.-	chr9	26387242	26387243	-	0	NA	Intergenic	AluY|SINE|Alu	-320569	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr4.97305984.-	chr4	97305984	97305985	-	0	NA	Intergenic	AluY|SINE|Alu	-544745	NM_005390	5161	Hs.131361	NM_005390	ENSG00000163114	PDHA2	PDHAL	pyruvate dehydrogenase (lipoamide) alpha 2	protein-coding
chr17.81153667.-	chr17	81153667	81153668	-	0	NA	Intergenic	Intergenic	20999	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
chr3.46709782.+	chr3	46709782	46709783	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9117	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr2.96149450.-	chr2	96149450	96149451	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1029	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr11.64929027.-	chr11	64929027	64929028	-	0	NA	Intergenic	AluSc5|SINE|Alu	8680	NM_001008778	387778	Hs.450642	NM_001008778	ENSG00000204710	SPDYC	RINGOC|Ringo2	speedy homolog C (Xenopus laevis)	protein-coding
chr6.154586620.-	chr6	154586620	154586621	-	0	NA	"intron (NM_001130699, intron 4 of 12)"	AluSg|SINE|Alu	-64595	NM_001130699	26034	Hs.146100	NM_001130699	ENSG00000074706	IPCEF1	PIP3-E|RP3-402L9.2	interaction protein for cytohesin exchange factors 1	protein-coding
chr19.8408081.+	chr19	8408081	8408082	+	0	NA	promoter-TSS (NM_198471)	promoter-TSS (NM_198471)	65	NM_198471	256949	Hs.322473	NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
chr8.1390543.+	chr8	1390543	1390544	+	0	NA	Intergenic	Intergenic	-58989	NM_001277161	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr8.49889216.-	chr8	49889216	49889217	-	0	NA	Intergenic	Intergenic	55217	NM_003068	6591	Hs.360174	NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH1|SNAIL2|WS2D	snail homolog 2 (Drosophila)	protein-coding
chr17.40464874.+	chr17	40464874	40464875	+	0	NA	TTS (NM_213662)	TTS (NM_213662)	25309	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr7.1286185.-	chr7	1286185	1286186	-	0	NA	Intergenic	CpG	-13531	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr18.9386395.-	chr18	9386395	9386396	-	0	NA	"intron (NM_020648, intron 3 of 4)"	AluSx1|SINE|Alu	-51630	NM_020648	57045	Hs.514685	NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation homolog 1 (Drosophila)	protein-coding
chr17.37768959.+	chr17	37768959	37768960	+	0	NA	Intergenic	Intergenic	-4784	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr20.17960352.-	chr20	17960352	17960353	-	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	-10590	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr22.38498798.+	chr22	38498798	38498799	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7878	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr7.5629218.+	chr7	5629218	5629219	+	0	NA	Intergenic	AluJo|SINE|Alu	-3218	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr9.74464983.-	chr9	74464983	74464984	-	0	NA	Intergenic	AluY|SINE|Alu	-61165	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr2.101924973.-	chr2	101924973	101924974	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-205	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr4.56262144.+	chr4	56262144	56262145	+	0	NA	promoter-TSS (NM_018475)	promoter-TSS (NM_018475)	64	NR_073070	55858	Hs.479766	NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|TMPT27|TPARL	transmembrane protein 165	protein-coding
chr4.113182851.+	chr4	113182851	113182852	+	0	NA	"intron (NM_001128426, intron 5 of 8)"	"intron (NM_001128426, intron 5 of 8)"	24208	NM_052864	92610	Hs.310640	NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF-interacting protein with forkhead-associated domain	protein-coding
chr2.198175552.-	chr2	198175552	198175553	-	0	NA	promoter-TSS (NM_001195144)	promoter-TSS (NM_001195144)	31	NM_153697	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr7.1033036.-	chr7	1033036	1033037	-	0	NA	Intergenic	Intergenic	-10201	NM_017781	54905	Hs.272795	NM_017781	ENSG00000073067	CYP2W1	-	"cytochrome P450, family 2, subfamily W, polypeptide 1"	protein-coding
chr1.21714344.-	chr1	21714344	21714345	-	0	NA	Intergenic	SVA_F|Other|Other	42310	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr4.83439460.+	chr4	83439460	83439461	+	0	NA	"intron (NM_001080506, intron 1 of 7)"	AluSx1|SINE|Alu	43666	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	-	transmembrane protein 150C	protein-coding
chr4.1358078.+	chr4	1358078	1358079	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16974	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr6.21206314.+	chr6	21206314	21206315	+	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	-387658	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr7.16632892.-	chr7	16632892	16632893	-	0	NA	Intergenic	AluJb|SINE|Alu	-52550	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr13.96681248.-	chr13	96681248	96681249	-	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	-24488	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr20.47588421.-	chr20	47588421	47588422	-	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	-50146	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr18.41408403.-	chr18	41408403	41408404	-	0	NA	Intergenic	AluSx3|SINE|Alu	550788	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr16.49498957.-	chr16	49498957	49498958	-	0	NA	Intergenic	CpG	-91149	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr1.6132037.-	chr1	6132037	6132038	-	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	-25863	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr7.532211.-	chr7	532211	532212	-	0	NA	Intergenic	Intergenic	-27270	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr1.117312776.-	chr1	117312776	117312777	-	0	NA	TTS (NM_001767)	TTS (NM_001767)	-15690	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr7.2943529.-	chr7	2943529	2943530	-	0	NA	Intergenic	Intergenic	59570	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr19.50724939.+	chr19	50724939	50724940	+	0	NA	"intron (NM_001145809, intron 3 of 42)"	AluSq2|SINE|Alu	18054	NM_001145809	79784	Hs.467142	NM_001077186	ENSG00000105357	MYH14	DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	"myosin, heavy chain 14, non-muscle"	protein-coding
chr13.72731952.-	chr13	72731952	72731953	-	0	NA	Intergenic	AluY|SINE|Alu	290622	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr19.58310313.+	chr19	58310313	58310314	+	0	NA	Intergenic	AluY|SINE|Alu	15968	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr6.141000360.-	chr6	141000360	141000361	-	0	NA	Intergenic	AluY|SINE|Alu	4591	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr10.104198579.-	chr10	104198579	104198580	-	0	NA	Intergenic	AluY|SINE|Alu	-2310	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B	microRNA 146b	miscRNA
chr17.21825596.+	chr17	21825596	21825597	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	226	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chrX.9366111.+	chrX	9366111	9366112	+	0	NA	Intergenic	AluY|SINE|Alu	-65224	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr19.14156304.+	chr19	14156304	14156305	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13667	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr1.40259996.+	chr1	40259996	40259997	+	0	NA	Intergenic	AluY|SINE|Alu	-5463	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr1.120270176.-	chr1	120270176	120270177	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15757	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr5.172424806.+	chr5	172424806	172424807	+	0	NA	"intron (NM_003945, intron 2 of 3)"	AluY|SINE|Alu	14043	NM_003945	8992	Hs.484188	NM_003945		ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	"ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1"	protein-coding
chr20.60392349.-	chr20	60392349	60392350	-	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	-136369	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr6.20212815.+	chr6	20212815	20212816	+	0	NA	promoter-TSS (NM_001080480)	promoter-TSS (NM_001080480)	-120	NM_001080480	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
chr9.6742805.-	chr9	6742805	6742806	-	0	NA	"intron (NM_001146696, intron 1 of 17)"	"intron (NM_001146696, intron 1 of 17)"	14836	NM_001146695	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chrX.53123332.+	chrX	53123332	53123333	+	0	NA	Intergenic	CpG	11790	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.49857031.-	chr12	49857031	49857032	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-74074	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr7.36823385.+	chr7	36823385	36823386	+	0	NA	Intergenic	AluSx3|SINE|Alu	-59231	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr1.147010014.-	chr1	147010014	147010015	-	0	NA	Intergenic	AluY|SINE|Alu	3168	NM_004326	607	Hs.415209	NM_004326	ENSG00000116128	BCL9	LGS	B-cell CLL/lymphoma 9	protein-coding
chr1.113336827.-	chr1	113336827	113336828	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73638	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr6.4776038.-	chr6	4776038	4776039	-	0	NA	promoter-TSS (NM_004824)	promoter-TSS (NM_004824)	642	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr5.12186592.+	chr5	12186592	12186593	+	0	NA	Intergenic	AluYa5|SINE|Alu	-282482	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	"catenin (cadherin-associated protein), delta 2"	protein-coding
chr12.94945451.+	chr12	94945451	94945452	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10114	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr2.101020041.-	chr2	101020041	101020042	-	0	NA	"intron (NM_004854, intron 3 of 6)"	"intron (NM_004854, intron 3 of 6)"	-14089	NM_004854	9486	Hs.731724	NM_004854	ENSG00000115526	CHST10	HNK-1ST|HNK1ST	carbohydrate sulfotransferase 10	protein-coding
chr1.6132101.+	chr1	6132101	6132102	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25927	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr7.124427323.-	chr7	124427323	124427324	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3541	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr17.2311342.-	chr17	2311342	2311343	-	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	7084	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr1.151573463.-	chr1	151573463	151573464	-	0	NA	Intergenic	SVA_E|Other|Other	11199	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr7.5322955.+	chr7	5322955	5322956	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	394	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr17.25539011.+	chr17	25539011	25539012	+	0	NA	Intergenic	SVA_E|Other|Other	82011	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	miscRNA
chr7.5355980.+	chr7	5355980	5355981	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33419	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr2.230314753.+	chr2	230314753	230314754	+	0	NA	"intron (NM_139072, intron 7 of 12)"	AluSg|SINE|Alu	-178696	NM_001100818	55022	Hs.409352	NM_001100818	ENSG00000153823	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
chr12.1044026.+	chr12	1044026	1044027	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14837	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr18.70912360.+	chr18	70912360	70912361	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19373	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr2.85691636.+	chr2	85691636	85691637	+	0	NA	Intergenic	AluSg7|SINE|Alu	29718	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr7.66480036.+	chr7	66480036	66480037	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18244	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr1.10727942.+	chr1	10727942	10727943	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128791	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr16.15231541.-	chr16	15231541	15231542	-	0	NA	Intergenic	Intergenic	-17318	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	-	microRNA 3180-4	miscRNA
chr8.119713935.+	chr8	119713935	119713936	+	0	NA	"intron (NR_038210, intron 3 of 4)"	AluSz|SINE|Alu	-79751	NM_207506	401474	Hs.701196	NM_001101676	ENSG00000177570	SAMD12	-	sterile alpha motif domain containing 12	protein-coding
chr19.1396405.-	chr19	1396405	1396406	-	0	NA	TTS (NM_024407)	TTS (NM_024407)	-5164	NM_000156	2593	Hs.81131	NM_000156	ENSG00000130005	GAMT	PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
chr11.133763876.-	chr11	133763876	133763877	-	0	NA	Intergenic	AluY|SINE|Alu	-4600	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr3.164852042.-	chr3	164852042	164852043	-	0	NA	Intergenic	AluY|SINE|Alu	55759	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr6.106301640.-	chr6	106301640	106301641	-	0	NA	Intergenic	SVA_D|Other|Other	232555	NM_001198	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	"PR domain containing 1, with ZNF domain"	protein-coding
chr14.101892670.+	chr14	101892670	101892671	+	0	NA	Intergenic	AluY|SINE|Alu	129343	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr2.4156399.-	chr2	4156399	4156400	-	0	NA	Intergenic	CpG	134777	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr13.28528667.+	chr13	28528667	28528668	+	0	NA	Intergenic	CpG	9324	NR_002162	432369	Hs.574118	NR_002162	ENSG00000180389	ATP5EP2	-	"ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2"	pseudo
chr8.144503757.+	chr8	144503757	144503758	+	0	NA	Intergenic	CpG	8845	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr8.11739659.-	chr8	11739659	11739660	-	0	NA	Intergenic	AluSx1|SINE|Alu	14013	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr16.58300811.+	chr16	58300811	58300812	+	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	16971	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr3.116522940.+	chr3	116522940	116522941	+	0	NA	Intergenic	AluYb8|SINE|Alu	94305	NR_015391	285194	Hs.120364	NR_015391		LSAMP-AS3	LSAMP-AS1|NCRNA00295	LSAMP antisense RNA 3	miscRNA
chr1.197418615.+	chr1	197418615	197418616	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181281	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr9.130997032.+	chr9	130997032	130997033	+	0	NA	"intron (NM_001005336, intron 11 of 21)"	L1MB3|LINE|L1	10077	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	miscRNA
chr11.16894105.+	chr11	16894105	16894106	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133957	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr14.23701976.+	chr14	23701976	23701977	+	0	NA	Intergenic	SVA_C|Other|Other	-49107	NM_012244	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	"solute carrier family 7 (amino acid transporter light chain, L system), member 8"	protein-coding
chr11.113666015.+	chr11	113666015	113666016	+	0	NA	Intergenic	AluSx|SINE|Alu	15497	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr9.16748443.-	chr9	16748443	16748444	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122343	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr22.39437243.-	chr22	39437243	39437244	-	0	NA	"intron (NM_145298, intron 1 of 6)"	"intron (NM_145298, intron 1 of 6)"	-570	NM_001006666	200316	Hs.659809	NM_001006666		APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F"	protein-coding
chr19.3093859.+	chr19	3093859	3093860	+	0	NA	promoter-TSS (NM_002067)	promoter-TSS (NM_002067)	-549	NM_002067	2767	Hs.654784	NM_002067		GNA11	GNA-11	"guanine nucleotide binding protein (G protein), alpha 11 (Gq class)"	protein-coding
chr19.15543243.-	chr19	15543243	15543244	-	0	NA	"intron (NM_021241, intron 3 of 7)"	CpG	13410	NM_014371	26993	Hs.399800	NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A kinase (PRKA) anchor protein 8-like	protein-coding
chr22.47545868.+	chr22	47545868	47545869	+	0	NA	"intron (NM_014346, intron 12 of 12)"	"intron (NM_014346, intron 12 of 12)"	387350	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr10.135014268.+	chr10	135014268	135014269	+	0	NA	"intron (NM_152643, intron 16 of 29)"	"intron (NM_152643, intron 16 of 29)"	-29510	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr17.810075.+	chr17	810075	810076	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42724	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr17.744648.+	chr17	744648	744649	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22703	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr9.139028954.-	chr9	139028954	139028955	-	0	NA	Intergenic	MIRb|SINE|MIR	18223	NM_152833	90120	Hs.287411	NM_001256526	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
chr16.924572.-	chr16	924572	924573	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69129	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr10.59080751.-	chr10	59080751	59080752	-	0	NA	Intergenic	AluY|SINE|Alu	16432	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr3.136609080.+	chr3	136609080	136609081	+	0	NA	"intron (NM_006153, intron 1 of 3)"	LTR12C|LTR|ERV1	28030	NM_006153	4690	Hs.477693	NM_001190796	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
chr17.74707064.+	chr17	74707064	74707065	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-8	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr12.132372601.-	chr12	132372601	132372602	-	0	NA	Intergenic	AluSx|SINE|Alu	6678	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr13.99373169.-	chr13	99373169	99373170	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31760	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr9.113201948.-	chr9	113201948	113201949	-	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	101823	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chr1.151742033.+	chr1	151742033	151742034	+	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	2902	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr10.134209647.+	chr10	134209647	134209648	+	0	NA	Intergenic	CpG	-1055	NM_138499	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr22.50959117.-	chr22	50959117	50959118	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4916	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr13.29352196.+	chr13	29352196	29352197	+	0	NA	Intergenic	Intergenic	-59046	NM_181785	283537	Hs.117167	NM_001135919	ENSG00000139508	SLC46A3	FKSG16	"solute carrier family 46, member 3"	protein-coding
chr10.122148857.-	chr10	122148857	122148858	-	0	NA	Intergenic	AluSx1|SINE|Alu	67609	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr2.236999630.+	chr2	236999630	236999631	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	77022	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr7.101006333.+	chr7	101006333	101006334	+	0	NA	"exon (NM_133457, exon 1 of 13)"	"exon (NM_133457, exon 1 of 13)"	211	NM_133457	136227	Hs.654854	NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	"collagen, type XXVI, alpha 1"	protein-coding
chr5.132082981.+	chr5	132082981	132082982	+	0	NA	promoter-TSS (NM_001039780)	promoter-TSS (NM_001039780)	-156	NM_001039780	645121	Hs.714496	NM_001039780	ENSG00000205089	CCNI2	-	"cyclin I family, member 2"	protein-coding
chr18.53101831.-	chr18	53101831	53101832	-	0	NA	"intron (NM_001243231, intron 3 of 17)"	AluY|SINE|Alu	12108	NM_001243233	6925	Hs.605153	NM_001083962	ENSG00000196628	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|TCF-4|bHLHb19	transcription factor 4	protein-coding
chr17.31565672.-	chr17	31565672	31565673	-	0	NA	"intron (NM_001094, intron 1 of 9)"	L2a|LINE|L2	-54334	NM_183377	40	Hs.368417	NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
chr1.202611826.-	chr1	202611826	202611827	-	0	NA	"intron (NM_177402, intron 1 of 8)"	CpG	-755	NM_001136504	127833	Hs.25422	NM_001136504	ENSG00000143858	SYT2	SytII	synaptotagmin II	protein-coding
chr17.28267926.-	chr17	28267926	28267927	-	0	NA	promoter-TSS (NR_026738)	promoter-TSS (NR_026738)	697	NM_198529	374786	Hs.662411	NM_001033562	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
chr12.122667596.-	chr12	122667596	122667597	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	71	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr13.100934750.+	chr13	100934750	100934751	+	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	193481	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr20.34266380.-	chr20	34266380	34266381	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13502	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr6.160985706.-	chr6	160985706	160985707	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53550	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr6.168352143.+	chr6	168352143	168352144	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25476	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr10.134034464.-	chr10	134034464	134034465	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34050	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr19.45678453.+	chr19	45678453	45678454	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3048	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr7.6194297.+	chr7	6194297	6194298	+	0	NA	"exon (NM_032172, exon 15 of 18)"	"exon (NM_032172, exon 15 of 18)"	49747	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
chr2.29554969.-	chr2	29554969	29554970	-	0	NA	"intron (NM_004304, intron 5 of 28)"	AluSc8|SINE|Alu	-216661	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr1.11903519.-	chr1	11903519	11903520	-	0	NA	TTS (NM_001286)	TTS (NM_001286)	-3143	NR_037806	100379251	Hs.710015	NR_037806		NPPA-AS1	NPPA-AS|NPPAAS	NPPA antisense RNA 1	miscRNA
chr17.57868958.-	chr17	57868958	57868959	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49669	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr19.17585848.+	chr19	17585848	17585849	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4548	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr9.11197041.-	chr9	11197041	11197042	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584318	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chrX.142432474.-	chrX	142432474	142432475	-	0	NA	Intergenic	AluSx1|SINE|Alu	-172833	NM_001009609	139067	Hs.447320	NM_001009609	ENSG00000189252	SPANXN3	CT11.8|SPANX-N3	"SPANX family, member N3"	protein-coding
chr7.157234945.-	chr7	157234945	157234946	-	0	NA	Intergenic	CpG	-105234	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr16.1959120.+	chr16	1959120	1959121	+	0	NA	Intergenic	Intergenic	9111	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr20.52362400.-	chr20	52362400	52362401	-	0	NA	Intergenic	AluSx|SINE|Alu	-129848	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr2.237068225.-	chr2	237068225	237068226	-	0	NA	Intergenic	CpG	-8427	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr3.37329885.+	chr3	37329885	37329886	+	0	NA	"intron (NM_002078, intron 4 of 23)"	AluSg|SINE|Alu	45203	NM_001172713	2803	Hs.344151	NM_001172713	ENSG00000144674	GOLGA4	GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
chr3.32853880.+	chr3	32853880	32853881	+	0	NA	Intergenic	AluY|SINE|Alu	-5630	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr15.64013623.+	chr15	64013623	64013624	+	0	NA	"intron (NM_003922, intron 19 of 77)"	AluSx|SINE|Alu	112524	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
chr3.77641957.+	chr3	77641957	77641958	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494794	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr5.43588007.+	chr5	43588007	43588008	+	0	NA	"intron (NR_073113, intron 1 of 2)"	AluY|SINE|Alu	-14784	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
chr14.95067754.-	chr14	95067754	95067755	-	0	NA	Intergenic	AluY|SINE|Alu	10960	NM_001085	12	Hs.710488	NM_001085	ENSG00000196136	SERPINA3	AACT|ACT|GIG25	"serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3"	protein-coding
chr19.34394386.-	chr19	34394386	34394387	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106635	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr5.114712352.-	chr5	114712352	114712353	-	0	NA	Intergenic	MIRb|SINE|MIR	79894	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr1.110881063.+	chr1	110881063	110881064	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	730	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr2.71561997.+	chr2	71561997	71561998	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3112	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr8.104645096.+	chr8	104645096	104645097	+	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	132120	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr2.91990332.-	chr2	91990332	91990333	-	0	NA	Intergenic	AluY|SINE|Alu	-26964	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
chr15.100080039.-	chr15	100080039	100080040	-	0	NA	Intergenic	AluSq2|SINE|Alu	26094	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr2.125181302.+	chr2	125181302	125181303	+	0	NA	"intron (NM_130773, intron 4 of 23)"	AluY|SINE|Alu	398438	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr13.21834970.-	chr13	21834970	21834971	-	0	NA	Intergenic	Intergenic	37294	NR_038939	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr8.128328711.-	chr8	128328711	128328712	-	0	NA	Intergenic	Intergenic	99146	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr10.35223722.-	chr10	35223722	35223723	-	0	NA	Intergenic	AluSx4|SINE|Alu	119469	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr7.61969459.-	chr7	61969459	61969460	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-794975	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr2.38825085.+	chr2	38825085	38825086	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5093	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr1.3083890.+	chr1	3083890	3083891	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	39351	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr4.42659052.+	chr4	42659052	42659053	+	0	NA	promoter-TSS (NM_001105529)	promoter-TSS (NM_001105529)	70	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr8.98771804.+	chr8	98771804	98771805	+	0	NA	Intergenic	AluSq10|SINE|Alu	-16005	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr13.79183591.-	chr13	79183591	79183592	-	0	NA	"intron (NR_047001, intron 5 of 5)"	CpG	5896	NM_006237	5457	Hs.654522	NM_006237	ENSG00000152192	POU4F1	BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
chr5.45596267.+	chr5	45596267	45596268	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99953	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr15.90118933.-	chr15	90118933	90118934	-	0	NA	"exon (NM_152259, exon 1 of 22)"	"exon (NM_152259, exon 1 of 22)"	-115	NM_152259	90381	Hs.441708	NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1-interacting checkpoint and replication regulator	protein-coding
chr9.1045392.+	chr9	1045392	1045393	+	0	NA	Intergenic	AluY|SINE|Alu	-4954	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr15.41613139.-	chr15	41613139	41613140	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11680	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr17.78559366.-	chr17	78559366	78559367	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40741	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr1.32679308.-	chr1	32679308	32679309	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4613	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chrX.70493601.+	chrX	70493601	70493602	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9441	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr12.48370830.+	chr12	48370830	48370831	+	0	NA	"intron (NM_001844, intron 47 of 53)"	"intron (NM_001844, intron 47 of 53)"	13500	NM_024056	79022	Hs.596726	NM_001143844	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
chr8.130306064.-	chr8	130306064	130306065	-	0	NA	Intergenic	AluY|SINE|Alu	52578	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LOC728724	-	hCG1814486	miscRNA
chr19.58310314.+	chr19	58310314	58310315	+	0	NA	Intergenic	AluY|SINE|Alu	15967	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr13.111467868.-	chr13	111467868	111467869	-	0	NA	Intergenic	Intergenic	-54787	NR_027701	283487	Hs.245390	NM_178514		LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	miscRNA
chr2.84029395.+	chr2	84029395	84029396	+	0	NA	Intergenic	AluYc3|SINE|Alu	-488411	NR_003663	388965	Hs.744643	NR_003663	ENSG00000182814	FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
chr3.53225175.-	chr3	53225175	53225176	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29952	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr2.149395107.+	chr2	149395107	149395108	+	0	NA	Intergenic	AluY|SINE|Alu	-7453	NM_015630	26122	Hs.23270	NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chr15.78913545.-	chr15	78913545	78913546	-	0	NA	promoter-TSS (NM_000743)	promoter-TSS (NM_000743)	-92	NM_001166694	1136	Hs.89605	NM_000743	ENSG00000080644	CHRNA3	LNCR2|NACHRA3|PAOD2	"cholinergic receptor, nicotinic, alpha 3 (neuronal)"	protein-coding
chr1.12290446.-	chr1	12290446	12290447	-	0	NA	"intron (NM_018156, intron 1 of 68)"	CpG	-333	NM_018156	55187	Hs.439381	NM_015378	ENSG00000048707	VPS13D	-	vacuolar protein sorting 13 homolog D (S. cerevisiae)	protein-coding
chr1.6471002.-	chr1	6471002	6471003	-	0	NA	Intergenic	AluSz|SINE|Alu	-8977	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr11.3224533.+	chr11	3224533	3224534	+	0	NA	Intergenic	CpG	-15029	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr2.240659288.+	chr2	240659288	240659289	+	0	NA	Intergenic	(CCCCAG)n|Simple_repeat|Simple_repeat	-25266	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chr16.53448443.+	chr16	53448443	53448444	+	0	NA	Intergenic	AluSp|SINE|Alu	-19908	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr19.55855545.+	chr19	55855545	55855546	+	0	NA	"intron (NM_032701, intron 6 of 8)"	AluYc|SINE|Alu	4324	NM_032701	84787	Hs.590982	NM_032701	ENSG00000133247	SUV420H2	KMT5C	suppressor of variegation 4-20 homolog 2 (Drosophila)	protein-coding
chrX.3617485.-	chrX	3617485	3617486	-	0	NA	"intron (NM_005044, intron 1 of 8)"	AluSx1|SINE|Alu	-14190	NM_005044	5613	Hs.390788	NM_005044	ENSG00000183943	PRKX	PKX1	"protein kinase, X-linked"	protein-coding
chrM.15763.-	chrM	15763	15764	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.87910791.-	chr16	87910791	87910792	-	0	NA	Intergenic	AluY|SINE|Alu	7691	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr5.86116416.-	chr5	86116416	86116417	-	0	NA	Intergenic	AluSp|SINE|Alu	-200102	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr2.106682178.-	chr2	106682178	106682179	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-65	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chrX.53111559.-	chrX	53111559	53111560	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-17	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.38493597.+	chr12	38493597	38493598	+	0	NA	Intergenic	Intergenic	-216960	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr7.151329644.+	chr7	151329644	151329645	+	0	NA	promoter-TSS (NM_024429)	promoter-TSS (NM_024429)	-300	NM_024429	51422	Hs.647072	NM_001040633	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	"protein kinase, AMP-activated, gamma 2 non-catalytic subunit"	protein-coding
chr7.2716336.-	chr7	2716336	2716337	-	0	NA	Intergenic	Intergenic	2827	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr2.136760878.-	chr2	136760878	136760879	-	0	NA	Intergenic	AluSq2|SINE|Alu	17656	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr7.77452623.+	chr7	77452623	77452624	+	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	-16824	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr5.79942084.+	chr5	79942084	79942085	+	0	NA	"intron (NM_000791, intron 3 of 5)"	AluSg|SINE|Alu	4770	NM_001190470	100462981	Hs.666077	NM_001190470		MTRNR2L2	HN2	MT-RNR2-like 2	protein-coding
chr3.88595861.-	chr3	88595861	88595862	-	0	NA	Intergenic	AluSc8|SINE|Alu	396845	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr5.179373598.-	chr5	179373598	179373599	-	0	NA	Intergenic	AluY|SINE|Alu	38742	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr20.43040165.-	chr20	43040165	43040166	-	0	NA	"intron (NM_178850, intron 3 of 7)"	"intron (NM_178850, intron 3 of 7)"	-3405	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	miscRNA
chr5.180198334.+	chr5	180198334	180198335	+	0	NA	Intergenic	SVA_D|Other|Other	-31276	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr17.45349414.-	chr17	45349414	45349415	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluSq|SINE|Alu	-18206	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr3.136117012.-	chr3	136117012	136117013	-	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	-147845	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr19.1252682.+	chr19	1252682	1252683	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4130	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr2.240371692.+	chr2	240371692	240371693	+	0	NA	Intergenic	SVA_D|Other|Other	-49049	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr3.29051419.-	chr3	29051419	29051420	-	0	NA	Intergenic	AluSc8|SINE|Alu	271384	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr7.2518186.-	chr7	2518186	2518187	-	0	NA	Intergenic	Intergenic	33977	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chrX.46794122.+	chrX	46794122	46794123	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22254	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr20.32757606.-	chr20	32757606	32757607	-	0	NA	Intergenic	AluSc8|SINE|Alu	57521	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr16.89034098.-	chr16	89034098	89034099	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9406	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr6.46742416.+	chr6	46742416	46742417	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18678	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr19.53979652.-	chr19	53979652	53979653	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8663	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr6.123144195.+	chr6	123144195	123144196	+	0	NA	Intergenic	AluY|SINE|Alu	34224	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr9.74827316.-	chr9	74827316	74827317	-	0	NA	"intron (NM_001242505, intron 4 of 15)"	AluY|SINE|Alu	-63049	NM_004293	9615	Hs.494163	NM_001242505	ENSG00000119125	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
chr14.103988566.+	chr14	103988566	103988567	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	630	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr10.7626524.+	chr10	7626524	7626525	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35112	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr2.70199608.+	chr2	70199608	70199609	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10211	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr18.70912369.+	chr18	70912369	70912370	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19364	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr6.139853816.+	chr6	139853816	139853817	+	0	NA	Intergenic	AluY|SINE|Alu	-58083	NR_033919	645434	Hs.666240	NR_033919		LOC645434	-	uncharacterized LOC645434	miscRNA
chr8.141559350.+	chr8	141559350	141559351	+	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	37269	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chrX.101829266.-	chrX	101829266	101829267	-	0	NA	Intergenic	L1PA3|LINE|L1	-24373	NR_002216	55999	Hs.454283	NR_002216	ENSG00000196970	NXF4	-	nuclear RNA export factor 4 pseudogene	pseudo
chr1.1023371.-	chr1	1023371	1023372	-	0	NA	"intron (NM_017891, intron 4 of 9)"	"intron (NM_017891, intron 4 of 9)"	13684	NM_001205252	401934	Hs.568137	NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
chr10.93052220.-	chr10	93052220	93052221	-	0	NA	Intergenic	Intergenic	-71861	NR_046310	84333	Hs.500512	NM_001256549	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
chr11.74476603.-	chr11	74476603	74476604	-	0	NA	"intron (NM_001098638, intron 1 of 5)"	AluSq|SINE|Alu	-16690	NM_001098638	254225	Hs.744081	NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
chr7.155246290.+	chr7	155246290	155246291	+	0	NA	Intergenic	Intergenic	-4534	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr12.117605469.-	chr12	117605469	117605470	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22831	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr9.91150780.+	chr9	91150780	91150781	+	0	NA	"intron (NM_145283, intron 1 of 2)"	"intron (NM_145283, intron 1 of 2)"	764	NM_001161625	158046	Hs.734507	NM_001161625	ENSG00000130045	NXNL2	C9orf121|RDCVF2	nucleoredoxin-like 2	protein-coding
chr4.55034933.+	chr4	55034933	55034934	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60331	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr20.4667225.+	chr20	4667225	4667226	+	0	NA	promoter-TSS (NM_001080123)	promoter-TSS (NM_001080123)	68	NM_001080123	5621	Hs.721670	NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
chr17.80687687.+	chr17	80687687	80687688	+	0	NA	Intergenic	CpG	-5765	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr12.56579286.-	chr12	56579286	56579287	-	0	NA	"intron (NM_003075, intron 3 of 27)"	AluSx1|SINE|Alu	-4065	NM_139067	6601	Hs.632717	NM_001130420		SMARCC2	BAF170|CRACC2|Rsc8	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2"	protein-coding
chr8.29884837.-	chr8	29884837	29884838	-	0	NA	Intergenic	CpG	-55812	NM_016127	51669	Hs.521487	NM_016127	ENSG00000133872	TMEM66	FOAP-7|SARAF|XTP3	transmembrane protein 66	protein-coding
chr5.76691196.+	chr5	76691196	76691197	+	0	NA	"intron (NM_001029853, intron 9 of 20)"	AluY|SINE|Alu	97136	NM_018268	55255	Hs.482573	NM_018268		WDR41	-	WD repeat domain 41	protein-coding
chr7.95178750.+	chr7	95178750	95178751	+	0	NA	Intergenic	AluY|SINE|Alu	47175	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr2.73511827.+	chr2	73511827	73511828	+	0	NA	Intergenic	CpG	9002	NM_001965	1961	Hs.3052	NM_001965	ENSG00000135625	EGR4	NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
chr4.2878582.-	chr4	2878582	2878583	-	0	NA	"intron (NM_014189, intron 2 of 14)"	AluSx|SINE|Alu	-32998	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr9.86597318.-	chr9	86597318	86597319	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1681	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr2.111367729.+	chr2	111367729	111367730	+	0	NA	Intergenic	Intergenic	-31420	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr19.3267476.+	chr19	3267476	3267477	+	0	NA	"intron (NR_033342, intron 2 of 12)"	"intron (NR_033342, intron 2 of 12)"	41993	NR_033342	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr8.143373440.+	chr8	143373440	143373441	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93723	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr14.20778839.+	chr14	20778839	20778840	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4686	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr2.170687944.+	chr2	170687944	170687945	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3926	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr17.42774508.+	chr17	42774508	42774509	+	0	NA	Intergenic	AluY|SINE|Alu	-7343	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chr7.2943531.+	chr7	2943531	2943532	+	0	NA	Intergenic	Intergenic	-59572	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr19.51815119.+	chr19	51815119	51815120	+	0	NA	promoter-TSS (NM_001101372)	promoter-TSS (NM_001101372)	17	NM_001101372	402665	Hs.546636	NM_001101372	ENSG00000142549	IGLON5	-	IgLON family member 5	protein-coding
chr11.67351060.-	chr11	67351060	67351061	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	6	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr9.133788044.+	chr9	133788044	133788045	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18819	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr2.113642142.+	chr2	113642142	113642143	+	0	NA	Intergenic	AluJb|SINE|Alu	-28406	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr3.95220118.-	chr3	95220118	95220119	-	0	NA	Intergenic	AluSx1|SINE|Alu	-181919	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr3.13876353.+	chr3	13876353	13876354	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45265	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr4.1626811.-	chr4	1626811	1626812	-	0	NA	Intergenic	CpG	-58907	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr1.227982958.+	chr1	227982958	227982959	+	0	NA	Intergenic	Intergenic	-20460	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr16.88257876.+	chr16	88257876	88257877	+	0	NA	Intergenic	Intergenic	-236003	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr6.3179555.+	chr6	3179555	3179556	+	0	NA	Intergenic	AluY|SINE|Alu	16446	NR_038296	100507194	Hs.678053	NR_038295	ENSG00000230269	LOC100507194	-	uncharacterized LOC100507194	miscRNA
chr7.72991470.+	chr7	72991470	72991471	+	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	1543	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr15.90792646.+	chr15	90792646	90792647	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-118	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr14.101892564.-	chr14	101892564	101892565	-	0	NA	Intergenic	AluY|SINE|Alu	-129449	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr20.57291208.+	chr20	57291208	57291209	+	0	NA	TTS (NM_001204872)	TTS (NM_001204872)	23346	NM_024663	79716	Hs.654868	NM_001204872	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase-like 1	protein-coding
chr8.128328718.-	chr8	128328718	128328719	-	0	NA	Intergenic	Intergenic	99139	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr7.151826444.-	chr7	151826444	151826445	-	0	NA	Intergenic	CpG	-103666	NM_022087	63917	Hs.647109	NM_022087	ENSG00000178234	GALNT11	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)	protein-coding
chr5.134527268.+	chr5	134527268	134527269	+	0	NA	"intron (NM_001277348, intron 3 of 5)"	CpG	56599	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	LOC340073	-	uncharacterized LOC340073	miscRNA
chr2.79329511.+	chr2	79329511	79329512	+	0	NA	Intergenic	AluY|SINE|Alu	-14361	NM_006507	5968	Hs.708865	NM_006507	ENSG00000172023	REG1B	PSPS2|REGH|REGI-BETA|REGL	regenerating islet-derived 1 beta	protein-coding
chr1.43189469.-	chr1	43189469	43189470	-	0	NA	Intergenic	Intergenic	-16456	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr20.47588424.+	chr20	47588424	47588425	+	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	50149	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr8.144247062.-	chr8	144247062	144247063	-	0	NA	Intergenic	AluSx|SINE|Alu	5009	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr10.76198264.+	chr10	76198264	76198265	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262017	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr5.10524218.+	chr5	10524218	10524219	+	0	NA	Intergenic	AluYg6|SINE|Alu	-40217	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chr9.36859957.+	chr9	36859957	36859958	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4348	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr16.8974149.+	chr16	8974149	8974150	+	0	NA	Intergenic	Intergenic	-11286	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr3.106520937.+	chr3	106520937	106520938	+	0	NA	Intergenic	AluSq|SINE|Alu	438548	NR_028303	100302640	Hs.648607	NR_028303		LOC100302640	-	uncharacterized LOC100302640	miscRNA
chr12.108297631.+	chr12	108297631	108297632	+	0	NA	promoter-TSS (NR_037629)	promoter-TSS (NR_037629)	-83	NR_037629	728739	Hs.741995	NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
chr4.185174132.+	chr4	185174132	185174133	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35018	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr21.22851670.-	chr21	22851670	22851671	-	0	NA	"intron (NM_004540, intron 15 of 17)"	AluY|SINE|Alu	-193848	NR_046937	100873771		NR_046937	ENSG00000222791	RNU6-67	-	"RNA, U6 small nuclear 67"	snRNA
chr20.4699524.-	chr20	4699524	4699525	-	0	NA	Intergenic	AluSc8|SINE|Alu	3032	NM_012409	23627	Hs.406696	NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion protein 2 (dublet)	protein-coding
chr12.129892268.+	chr12	129892268	129892269	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	495944	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr7.5557969.+	chr7	5557969	5557970	+	0	NA	Intergenic	AluYc|SINE|Alu	-4570	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr9.137200953.+	chr9	137200953	137200954	+	0	NA	Intergenic	Intergenic	-17363	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chrX.42145030.-	chrX	42145030	42145031	-	0	NA	Intergenic	SVA_D|Other|Other	362743	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr2.120282023.+	chr2	120282023	120282024	+	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	5	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr15.30396195.+	chr15	30396195	30396196	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	260	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr18.56561514.-	chr18	56561514	56561515	-	0	NA	"intron (NM_018181, intron 3 of 10)"	AluSz|SINE|Alu	-31453	NM_018181	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
chr21.47838715.+	chr21	47838715	47838716	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40147	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr12.49856950.-	chr12	49856950	49856951	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73993	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr1.38342269.+	chr1	38342269	38342270	+	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	-16977	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr8.14459355.+	chr8	14459355	14459356	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	251664	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr4.40196249.+	chr4	40196249	40196250	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2278	NM_004310	399	Hs.654594	NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
chr1.236211520.-	chr1	236211520	236211521	-	0	NA	"intron (NM_002508, intron 2 of 19)"	AluY|SINE|Alu	-16961	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr16.75182860.+	chr16	75182860	75182861	+	0	NA	"intron (NM_153688, intron 1 of 3)"	GC_rich|Low_complexity|Low_complexity	439	NM_153688	162239	Hs.388813	NM_153688	ENSG00000184517	ZFP1	ZNF475	ZFP1 zinc finger protein	protein-coding
chr12.107112652.+	chr12	107112652	107112653	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34174	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr5.1067318.+	chr5	1067318	1067319	+	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	-4229	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr5.52856709.+	chr5	52856709	52856710	+	0	NA	"intron (NM_002495, intron 1 of 4)"	CpG	244	NM_002495	4724	Hs.528222	NM_002495	ENSG00000164258	NDUFS4	AQDQ|CI-18	"NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)"	protein-coding
chr3.160673496.-	chr3	160673496	160673497	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149187	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr19.18180447.+	chr19	18180447	18180448	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17250	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr9.114342773.+	chr9	114342773	114342774	+	0	NA	"intron (NM_001146108, intron 6 of 9)"	AluSp|SINE|Alu	18938	NM_012212	22949	Hs.584864	NM_001146108	ENSG00000106853	PTGR1	LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
chr9.26387256.+	chr9	26387256	26387257	+	0	NA	Intergenic	AluY|SINE|Alu	320583	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr5.178016791.-	chr5	178016791	178016792	-	0	NA	"intron (NM_173465, intron 1 of 28)"	CpG	-765	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr7.132855395.-	chr7	132855395	132855396	-	0	NA	Intergenic	AluSq2|SINE|Alu	82428	NM_001037126	60412	Hs.321273	NM_001037126	ENSG00000131558	EXOC4	SEC8|SEC8L1|Sec8p	exocyst complex component 4	protein-coding
chr11.74107022.-	chr11	74107022	74107023	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2480	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr1.240947691.+	chr1	240947691	240947692	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172229	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr1.172502598.-	chr1	172502598	172502599	-	0	NA	"exon (NM_014283, exon 1 of 24)"	"exon (NM_014283, exon 1 of 24)"	-281	NM_016227	51430	Hs.743437	NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
chr12.129892191.-	chr12	129892191	129892192	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496021	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr2.27588361.+	chr2	27588361	27588362	+	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	4558	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr2.10303069.-	chr2	10303069	10303070	-	0	NA	"intron (NM_182626, intron 2 of 2)"	"intron (NM_182626, intron 2 of 2)"	-21088	NM_182626	348738	Hs.454981	NM_182626		C2orf48	-	chromosome 2 open reading frame 48	protein-coding
chr7.6843792.+	chr7	6843792	6843793	+	0	NA	"intron (NM_198097, intron 12 of 14)"	AluSz|SINE|Alu	22134	NM_198097	221960	Hs.567779	NM_198097		CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
chr11.68671212.-	chr11	68671212	68671213	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-91	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr7.5396355.+	chr7	5396355	5396356	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66822	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr2.129491286.+	chr2	129491286	129491287	+	0	NA	Intergenic	Intergenic	-415115	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chrX.53111687.+	chrX	53111687	53111688	+	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	145	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr20.62479281.+	chr20	62479281	62479282	+	0	NA	Intergenic	Intergenic	-13285	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr19.12676663.+	chr19	12676663	12676664	+	0	NA	Intergenic	AluSz|SINE|Alu	-14307	NM_144976	163050	Hs.655615	NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
chr18.55790694.+	chr18	55790694	55790695	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25871	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr11.5315859.-	chr11	5315859	5315860	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7317	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr7.66137168.-	chr7	66137168	66137169	-	0	NA	Intergenic	AluY|SINE|Alu	-43300	NM_001167961	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr6.108280018.+	chr6	108280018	108280019	+	0	NA	promoter-TSS (NM_007214)	promoter-TSS (NM_007214)	-536	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr12.120959417.-	chr12	120959417	120959418	-	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	-7547	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr12.58230257.-	chr12	58230257	58230258	-	0	NA	"intron (NM_005730, intron 1 of 7)"	AluJb|SINE|Alu	-10490	NM_005730	10106	Hs.524530	NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2"	protein-coding
chr14.23706358.-	chr14	23706358	23706359	-	0	NA	Intergenic	AluSz|SINE|Alu	-48951	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr17.5148709.-	chr17	5148709	5148710	-	0	NA	Intergenic	AluSq|SINE|Alu	10554	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr21.47403467.+	chr21	47403467	47403468	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1804	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr4.22186882.+	chr4	22186882	22186883	+	0	NA	Intergenic	AluY|SINE|Alu	154407	NR_037877	100505912	Hs.270471	NR_037877		LOC100505912	-	uncharacterized LOC100505912	miscRNA
chr9.90728990.-	chr9	90728990	90728991	-	0	NA	Intergenic	REP522|Satellite|telo	-20910	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	"SPATA31 subfamily C, member 2"	protein-coding
chr7.5396375.+	chr7	5396375	5396376	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66802	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr2.163018695.+	chr2	163018695	163018696	+	0	NA	Intergenic	AluSz|SINE|Alu	-9781	NM_002054	2641	Hs.741174	NM_002054	ENSG00000115263	GCG	GLP1|GLP2|GRPP	glucagon	protein-coding
chr2.95885001.+	chr2	95885001	95885002	+	0	NA	Intergenic	AluY|SINE|Alu	53818	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr2.71786208.-	chr2	71786208	71786209	-	0	NA	"intron (NM_001130976, intron 21 of 53)"	"intron (NM_001130976, intron 21 of 53)"	-92376	NM_001130987	8291	Hs.252180	NM_001130455	ENSG00000135636	DYSF	FER1L1|LGMD2B|MMD1	"dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)"	protein-coding
chr22.41215498.-	chr22	41215498	41215499	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	106	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr3.127494777.+	chr3	127494777	127494778	+	0	NA	"intron (NM_001256585, intron 3 of 6)"	"intron (NM_001256585, intron 3 of 6)"	46948	NM_007283	11343	Hs.277035	NM_001003794	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
chrX.24728153.-	chrX	24728153	24728154	-	0	NA	"intron (NM_016937, intron 4 of 36)"	SVA_F|Other|Other	-16089	NM_016937	5422	Hs.567319	NM_016937	ENSG00000101868	POLA1	POLA|p180	"polymerase (DNA directed), alpha 1, catalytic subunit"	protein-coding
chr5.8479641.+	chr5	8479641	8479642	+	0	NA	Intergenic	AluY|SINE|Alu	18603	NR_039663	100616142		NR_039663	ENSG00000266471	MIR4458	-	microRNA 4458	miscRNA
chr5.1201349.+	chr5	1201349	1201350	+	0	NA	promoter-TSS (NM_001003841)	promoter-TSS (NM_001003841)	-361	NM_001003841	340024	Hs.481478	NM_001003841	ENSG00000174358	SLC6A19	B0AT1|HND	"solute carrier family 6 (neutral amino acid transporter), member 19"	protein-coding
chr19.11043330.-	chr19	11043330	11043331	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3906	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr9.137588884.+	chr9	137588884	137588885	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55232	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr1.183670892.+	chr1	183670892	183670893	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48444	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr17.63480286.+	chr17	63480286	63480287	+	0	NA	Intergenic	SVA_D|Other|Other	77454	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
chr19.27732271.-	chr19	27732271	27732272	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-552577	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr5.91967016.+	chr5	91967016	91967017	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939483	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr7.70502843.-	chr7	70502843	70502844	-	0	NA	Intergenic	LTR12C|LTR|ERV1	94680	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr8.14459419.-	chr8	14459419	14459420	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251600	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr7.66480058.+	chr7	66480058	66480059	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18266	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr1.54953532.-	chr1	54953532	54953533	-	0	NA	Intergenic	Intergenic	60275	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr8.14882307.-	chr8	14882307	14882308	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171288	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr18.74062620.-	chr18	74062620	74062621	-	0	NA	Intergenic	CpG	-144526	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr10.104238502.-	chr10	104238502	104238503	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17332	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr21.45566096.-	chr21	45566096	45566097	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12602	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr19.735783.+	chr19	735783	735784	+	0	NA	"intron (NM_002579, intron 6 of 8)"	"intron (NM_002579, intron 6 of 8)"	-15363	NM_173481	126353	Hs.439180	NM_173481	ENSG00000099812	C19orf21	-	chromosome 19 open reading frame 21	protein-coding
chr17.6371765.+	chr17	6371765	6371766	+	0	NA	"intron (NM_001165966, intron 12 of 18)"	"intron (NM_001165966, intron 12 of 18)"	24030	NM_019013	54478	Hs.592116	NM_001195228	ENSG00000129195	FAM64A	CATS|RCS1	"family with sequence similarity 64, member A"	protein-coding
chr5.137550358.-	chr5	137550358	137550359	-	0	NA	Intergenic	AluY|SINE|Alu	1326	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr18.11959840.-	chr18	11959840	11959841	-	0	NA	Intergenic	SVA_D|Other|Other	21587	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr8.137542875.-	chr8	137542875	137542876	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-1073159	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	"KH domain containing, RNA binding, signal transduction associated 3"	protein-coding
chr11.726156.+	chr11	726156	726157	+	0	NA	"exon (NM_022772, exon 18 of 21)"	"exon (NM_022772, exon 18 of 21)"	20036	NM_022772	64787	Hs.55016	NM_022772	ENSG00000177106	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
chrX.19498829.+	chrX	19498829	19498830	+	0	NA	"intron (NM_001001671, intron 3 of 28)"	AluSx1|SINE|Alu	34550	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr1.9517620.+	chr1	9517620	9517621	+	0	NA	Intergenic	AluJb|SINE|Alu	-81908	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr17.46101017.-	chr17	46101017	46101018	-	0	NA	Intergenic	CpG	-13596	NR_029687	406943		NR_029687		MIR152	MIRN152	microRNA 152	miscRNA
chr1.9969978.+	chr1	9969978	9969979	+	0	NA	"intron (NM_020248, intron 1 of 5)"	CpG	338	NM_020248	56998	Hs.463759	NM_001012329	ENSG00000178585	CTNNBIP1	ICAT	"catenin, beta interacting protein 1"	protein-coding
chr6.168079339.-	chr6	168079339	168079340	-	0	NA	Intergenic	Intergenic	-118200	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr6.168149245.-	chr6	168149245	168149246	-	0	NA	Intergenic	Intergenic	-48294	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr15.57662557.+	chr15	57662557	57662558	+	0	NA	Intergenic	AluSx|SINE|Alu	-6146	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr15.41687844.+	chr15	41687844	41687845	+	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	6814	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr3.128194214.-	chr3	128194214	128194215	-	0	NA	Intergenic	Intergenic	8123	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr17.38406615.+	chr17	38406615	38406616	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluY|SINE|Alu	31041	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chrM.9316.+	chrM	9316	9317	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr5.2391216.+	chr5	2391216	2391217	+	0	NA	Intergenic	Intergenic	360553	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr21.47343961.-	chr21	47343961	47343962	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57702	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr19.4065756.-	chr19	4065756	4065757	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1060	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr5.127873970.-	chr5	127873970	127873971	-	0	NA	promoter-TSS (NM_001999)	promoter-TSS (NM_001999)	235	NM_001999	2201	Hs.519294	NM_001999	ENSG00000138829	FBN2	CCA|DA9	fibrillin 2	protein-coding
chr17.18179029.+	chr17	18179029	18179030	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14605	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr1.197233952.+	chr1	197233952	197233953	+	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	-3382	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr4.84372672.-	chr4	84372672	84372673	-	0	NA	"intron (NM_133636, intron 2 of 17)"	AluY|SINE|Alu	-4353	NM_133636	113510	Hs.480101	NM_133636	ENSG00000163312	HELQ	HEL308	"helicase, POLQ-like"	protein-coding
chr4.3038602.-	chr4	3038602	3038603	-	0	NA	"intron (NM_182982, intron 13 of 15)"	"intron (NM_182982, intron 13 of 15)"	-37639	NR_045414	100750326	Hs.575112	NR_045414		HTT-AS1	HTTAS	HTT antisense RNA 1 (head to head)	miscRNA
chr9.16748448.-	chr9	16748448	16748449	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122338	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr16.81206618.-	chr16	81206618	81206619	-	0	NA	"intron (NM_001076780, intron 16 of 17)"	LTR33|LTR|ERVL	-47357	NM_001076780	114780	Hs.413525	NM_001076780	ENSG00000166473	PKD1L2	PC1L2	polycystic kidney disease 1-like 2	protein-coding
chr10.122148827.-	chr10	122148827	122148828	-	0	NA	Intergenic	AluSx1|SINE|Alu	67639	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr2.224724780.-	chr2	224724780	224724781	-	0	NA	Intergenic	AluSp|SINE|Alu	22461	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr6.89377978.+	chr6	89377978	89377979	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295370	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr19.14156317.-	chr19	14156317	14156318	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13654	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr22.22259608.+	chr22	22259608	22259609	+	0	NA	Intergenic	AluSq2|SINE|Alu	-37638	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr22.51001354.+	chr22	51001354	51001355	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-26	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.937253.+	chr1	937253	937254	+	0	NA	Intergenic	CpG-24	-1701	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr4.37977136.+	chr4	37977136	37977137	+	0	NA	"intron (NM_001253912, intron 2 of 20)"	LTR13|LTR|ERVK	15080	NM_006607	10744	Hs.668806	NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
chr11.125462723.+	chr11	125462723	125462724	+	0	NA	promoter-TSS (NM_152713)	promoter-TSS (NM_152713)	-16	NM_152713	3703	Hs.504237	NM_152713	ENSG00000134910	STT3A	ITM1|STT3-A|TMC	"STT3A, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr8.95907727.+	chr8	95907727	95907728	+	0	NA	promoter-TSS (NM_057749)	promoter-TSS (NM_057749)	-245	NM_057749	9134	Hs.521693	NM_057749	ENSG00000175305	CCNE2	CYCE2	cyclin E2	protein-coding
chr5.179167541.-	chr5	179167541	179167542	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7690	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr7.77452556.-	chr7	77452556	77452557	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16891	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr12.32673570.+	chr12	32673570	32673571	+	0	NA	"intron (NM_139241, intron 1 of 16)"	AluY|SINE|Alu	18529	NM_139241	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	"FYVE, RhoGEF and PH domain containing 4"	protein-coding
chr21.43198272.-	chr21	43198272	43198273	-	0	NA	Intergenic	Intergenic	11023	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr15.90327985.-	chr15	90327985	90327986	-	0	NA	TTS (NM_001150)	TTS (NM_001150)	-8396	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr1.101426773.+	chr1	101426773	101426774	+	0	NA	"intron (NM_133496, intron 8 of 10)"	AluY|SINE|Alu	64589	NM_015958	51611	Hs.440776	NM_001077394		DPH5	CGI-30|HSPC143|NPD015	DPH5 homolog (S. cerevisiae)	protein-coding
chr9.133788041.-	chr9	133788041	133788042	-	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	18816	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr22.42027289.-	chr22	42027289	42027290	-	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	-9994	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr1.3022439.+	chr1	3022439	3022440	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22100	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr19.10587508.-	chr19	10587508	10587509	-	0	NA	Intergenic	AluSq2|SINE|Alu	-23875	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr16.341080.-	chr16	341080	341081	-	0	NA	"intron (NM_181050, intron 8 of 9)"	"intron (NM_181050, intron 8 of 9)"	-7962	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chrX.42145005.-	chrX	42145005	42145006	-	0	NA	Intergenic	SVA_D|Other|Other	362718	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr3.32863283.-	chr3	32863283	32863284	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3773	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr18.73167691.-	chr18	73167691	73167692	-	0	NA	Intergenic	CpG	28102	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chrX.153665714.+	chrX	153665714	153665715	+	0	NA	TTS (NM_001183)	TTS (NM_001183)	455	NM_001493	2664	Hs.595950	NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4	GDP dissociation inhibitor 1	protein-coding
chr20.32914500.+	chr20	32914500	32914501	+	0	NA	Intergenic	AluSx|SINE|Alu	-14892	NM_001161766	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr4.185174252.-	chr4	185174252	185174253	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35138	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr5.471169.+	chr5	471169	471170	+	0	NA	"non-coding (NR_024158, exon 2 of 2)"	"non-coding (NR_024158, exon 2 of 2)"	1911	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	miscRNA
chr15.22804018.-	chr15	22804018	22804019	-	0	NA	Intergenic	AluSp|SINE|Alu	29377	NM_052903	114791	Hs.533898	NM_001102610	ENSG00000153575	TUBGCP5	GCP5	"tubulin, gamma complex associated protein 5"	protein-coding
chr1.171662946.+	chr1	171662946	171662947	+	0	NA	Intergenic	SVA_C|Other|Other	-41173	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr10.35559811.+	chr10	35559811	35559812	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23858	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr2.91874352.+	chr2	91874352	91874353	+	0	NA	Intergenic	CpG	-26377	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr11.62551835.+	chr11	62551835	62551836	+	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	-3039	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr20.5213517.-	chr20	5213517	5213518	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81498	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr16.3755320.-	chr16	3755320	3755321	-	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	-12278	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr21.25155476.+	chr21	25155476	25155477	+	0	NA	Intergenic	AluY|SINE|Alu	-398320	NR_040254	266917	Hs.145622	NR_040254	ENSG00000228592	D21S2088E	-	D21S2088E	miscRNA
chr1.161879495.-	chr1	161879495	161879496	-	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	-114149	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr5.78495536.-	chr5	78495536	78495537	-	0	NA	Intergenic	AluY|SINE|Alu	36389	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHDC1L3	"junction mediating and regulatory protein, p53 cofactor"	protein-coding
chr5.114712460.+	chr5	114712460	114712461	+	0	NA	Intergenic	AluYc3|SINE|Alu	-80002	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr15.30396136.+	chr15	30396136	30396137	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	201	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr19.9311342.-	chr19	9311342	9311343	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14205	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr6.41732912.+	chr6	41732912	41732913	+	0	NA	Intergenic	AluSx1|SINE|Alu	14718	NM_006653	10817	Hs.194208	NM_006653	ENSG00000137218	FRS3	FRS2B|FRS2beta|SNT-2|SNT2	fibroblast growth factor receptor substrate 3	protein-coding
chr19.33554697.+	chr19	33554697	33554698	+	0	NA	"intron (NM_033103, intron 1 of 14)"	"intron (NM_033103, intron 1 of 14)"	1127	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr3.1144530.+	chr3	1144530	1144531	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9901	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr2.905558.-	chr2	905558	905559	-	0	NA	Intergenic	Intergenic	40996	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr6.170055431.+	chr6	170055431	170055432	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46728	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr7.936479.+	chr7	936479	936480	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20288	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr19.5146252.+	chr19	5146252	5146253	+	0	NA	"intron (NM_015015, intron 21 of 22)"	CpG	177128	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr2.119939739.-	chr2	119939739	119939740	-	0	NA	Intergenic	Intergenic	23268	NM_182528	165257	Hs.433493	NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	"complement component 1, q subcomponent-like 2"	protein-coding
chr9.139625247.-	chr9	139625247	139625248	-	0	NA	Intergenic	AluSx|SINE|Alu	2611	NR_003672	84973	Hs.495480	NR_003672	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7 (non-protein coding)	miscRNA
chr12.75694199.-	chr12	75694199	75694200	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29637	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr8.145691762.-	chr8	145691762	145691763	-	0	NA	promoter-TSS (NM_145754)	promoter-TSS (NM_145754)	-24	NM_145754	90990	Hs.528713	NM_145754	ENSG00000167702	KIFC2	-	kinesin family member C2	protein-coding
chr20.32873754.-	chr20	32873754	32873755	-	0	NA	"intron (NM_000687, intron 8 of 9)"	AluY|SINE|Alu	-17461	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr5.65272924.-	chr5	65272924	65272925	-	0	NA	"intron (NM_001253699, intron 1 of 25)"	SVA_D|Other|Other	31523	NR_028474	100303749	Hs.608060	NR_028474		LOC100303749	-	"LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene"	pseudo
chr18.38415898.-	chr18	38415898	38415899	-	0	NA	Intergenic	AluY|SINE|Alu	-684663	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr2.162137804.+	chr2	162137804	162137805	+	0	NA	Intergenic	Intergenic	-26982	NM_005805	10213	Hs.740477	NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 14"	protein-coding
chr4.38869375.+	chr4	38869375	38869376	+	0	NA	promoter-TSS (NR_033290)	promoter-TSS (NR_033290)	21	NM_138389	92689	Hs.476517	NM_138389	ENSG00000197712	FAM114A1	Noxp20	"family with sequence similarity 114, member A1"	protein-coding
chrX.153095517.-	chrX	153095517	153095518	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-486	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr15.23086480.-	chr15	23086480	23086481	-	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	44	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr1.32731820.-	chr1	32731820	32731821	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7892	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr2.4156478.+	chr2	4156478	4156479	+	0	NA	Intergenic	Intergenic	-134856	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr15.90645830.-	chr15	90645830	90645831	-	0	NA	promoter-TSS (NM_002168)	promoter-TSS (NM_002168)	122	NM_002168	3418	Hs.596461	NM_002168		IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	"isocitrate dehydrogenase 2 (NADP+), mitochondrial"	protein-coding
chr8.65493830.-	chr8	65493830	65493831	-	0	NA	"exon (NM_152414, exon 1 of 1)"	"exon (NM_152414, exon 1 of 1)"	-1035	NM_152414	27319	Hs.743680	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|CAGL85|TNRC20	"basic helix-loop-helix family, member e22"	protein-coding
chr7.102565275.-	chr7	102565275	102565276	-	0	NA	"intron (NM_145032, intron 10 of 19)"	AluYc|SINE|Alu	-11931	NM_001031692	10234	Hs.567412	NM_001031692	ENSG00000128606	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
chr19.49656121.-	chr19	49656121	49656122	-	0	NA	"intron (NM_002152, intron 2 of 5)"	AluSc8|SINE|Alu	-2560	NM_002152	3270	Hs.436885	NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
chrM.149.+	chrM	149	150	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr22.30781350.-	chr22	30781350	30781351	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	-1952	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr21.47424131.+	chr21	47424131	47424132	+	0	NA	"3' UTR (NM_001848, exon 35 of 35)"	"3' UTR (NM_001848, exon 35 of 35)"	22468	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chrX.53111616.-	chrX	53111616	53111617	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-74	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.101426804.+	chr1	101426804	101426805	+	0	NA	"intron (NM_133496, intron 8 of 10)"	AluY|SINE|Alu	64558	NM_015958	51611	Hs.440776	NM_001077394		DPH5	CGI-30|HSPC143|NPD015	DPH5 homolog (S. cerevisiae)	protein-coding
chr10.12405373.+	chr10	12405373	12405374	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13790	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr9.33511055.+	chr9	33511055	33511056	+	0	NA	"non-coding (NR_003667, exon 1 of 5)"	"non-coding (NR_003667, exon 1 of 5)"	109	NR_003667	441394	Hs.521441	NR_003667		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1	pseudo
chr6.8388448.-	chr6	8388448	8388449	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47346	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr1.28965053.-	chr1	28965053	28965054	-	0	NA	"intron (NM_005644, intron 1 of 5)"	AluSx|SINE|Alu	-4551	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chr17.15703039.+	chr17	15703039	15703040	+	0	NA	Intergenic	AluYk4|SINE|Alu	12875	NR_002211	4213	Hs.356135	NR_002211		MEIS3P1	MEIS3|MEIS4|MRG2	Meis homeobox 3 pseudogene 1	pseudo
chr3.195928222.+	chr3	195928222	195928223	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSx1|SINE|Alu	10078	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr6.57322581.+	chr6	57322581	57322582	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140159	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr2.10572403.-	chr2	10572403	10572404	-	0	NA	Intergenic	CpG	-14572	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	"small nucleolar RNA, H/ACA box 80B"	snoRNA
chr9.105850388.-	chr9	105850388	105850389	-	0	NA	Intergenic	AluYc|SINE|Alu	-92795	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr1.158012614.+	chr1	158012614	158012615	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49551	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr2.55646994.+	chr2	55646994	55646995	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	63	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr17.67192568.+	chr17	67192568	67192569	+	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	48388	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chr5.78890171.+	chr5	78890171	78890172	+	0	NA	Intergenic	AluY|SINE|Alu	-18072	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr4.1400179.-	chr4	1400179	1400180	-	0	NA	Intergenic	CpG	-14839	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr2.122475132.+	chr2	122475132	122475133	+	0	NA	"intron (NR_037857, intron 3 of 3)"	AluSq2|SINE|Alu	19371	NM_032390	84365	Hs.367842	NM_032390	ENSG00000155438	MKI67IP	NIFK|Nopp34	MKI67 (FHA domain) interacting nucleolar phosphoprotein	protein-coding
chr10.6985549.-	chr10	6985549	6985550	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163989	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr2.123429983.-	chr2	123429983	123429984	-	0	NA	Intergenic	AluY|SINE|Alu	-916862	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr8.101661652.+	chr8	101661652	101661653	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	241	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr19.48836574.-	chr19	48836574	48836575	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7945	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr22.32868758.+	chr22	32868758	32868759	+	0	NA	Intergenic	AluY|SINE|Alu	-1949	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr21.34602967.-	chr21	34602967	34602968	-	0	NA	"intron (NM_207584, intron 1 of 8)"	CpG	-736	NM_207584	3455	Hs.708195	NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-alpha-REC|IFNABR|IFNARB	"interferon (alpha, beta and omega) receptor 2"	protein-coding
chr5.52316809.+	chr5	52316809	52316810	+	0	NA	"intron (NR_073107, intron 1 of 28)"	AluSx|SINE|Alu	31653	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	"integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)"	protein-coding
chr19.4479500.-	chr19	4479500	4479501	-	0	NA	"intron (NM_001001520, intron 3 of 16)"	AluY|SINE|Alu	-7245	NM_032631	84717	Hs.43071	NM_001001520	ENSG00000167674	HDGFRP2	HDGF2	hepatoma-derived growth factor-related protein 2	protein-coding
chr11.28078787.+	chr11	28078787	28078788	+	0	NA	TTS (NR_030341)	TTS (NR_030341)	425	NR_030341	693195		NR_030341	ENSG00000207874	MIR610	MIRN610|hsa-mir-610	microRNA 610	miscRNA
chr7.1547552.+	chr7	1547552	1547553	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3534	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr16.9185086.-	chr16	9185086	9185087	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	451	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr8.104645115.-	chr8	104645115	104645116	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132139	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr15.41674335.+	chr15	41674335	41674336	+	0	NA	Intergenic	SVA_F|Other|Other	20323	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr4.48016911.+	chr4	48016911	48016912	+	0	NA	Intergenic	AluY|SINE|Alu	-1880	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr15.83365820.-	chr15	83365820	83365821	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12815	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr7.150812776.-	chr7	150812776	150812777	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28950	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr14.23408334.-	chr14	23408334	23408335	-	0	NA	Intergenic	AluY|SINE|Alu	9673	NM_006109	10419	Hs.367854	NM_001039619	ENSG00000100462	PRMT5	HRMT1L5|IBP72|JBP1|SKB1|SKB1Hs	protein arginine methyltransferase 5	protein-coding
chr4.138974460.-	chr4	138974460	138974461	-	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	35708	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr2.87624386.+	chr2	87624386	87624387	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-130588	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr12.51681481.-	chr12	51681481	51681482	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17279	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr8.7414175.+	chr8	7414175	7414176	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2451	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr2.232276917.+	chr2	232276917	232276918	+	0	NA	Intergenic	CpG	16582	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr22.18892179.+	chr22	18892179	18892180	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1557	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr10.104209687.-	chr10	104209687	104209688	-	0	NA	TTS (NM_024886)	TTS (NM_024886)	-113	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr6.105584675.-	chr6	105584675	105584676	-	0	NA	promoter-TSS (NM_007073)	promoter-TSS (NM_007073)	132	NM_007073	11149	Hs.221660	NM_001199563	ENSG00000112276	BVES	HBVES|POP1|POPDC1	blood vessel epicardial substance	protein-coding
chr2.19132835.+	chr2	19132835	19132836	+	0	NA	Intergenic	AluYk4|SINE|Alu	-361989	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr10.81319180.+	chr10	81319180	81319181	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	983	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr3.52525473.-	chr3	52525473	52525474	-	0	NA	"exon (NM_007184, exon 20 of 21)"	"exon (NM_007184, exon 20 of 21)"	3883	NM_015136	23166	Hs.301989	NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FELE-1|FEX1|STAB-1	stabilin 1	protein-coding
chr2.27588385.+	chr2	27588385	27588386	+	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	4534	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr3.180140567.-	chr3	180140567	180140568	-	0	NA	Intergenic	AluY|SINE|Alu	179351	NM_133462	151613	Hs.43213	NM_001042601	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
chr2.159651789.+	chr2	159651789	159651790	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-40	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr10.6985590.-	chr10	6985590	6985591	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164030	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr19.33554703.+	chr19	33554703	33554704	+	0	NA	"intron (NM_033103, intron 1 of 14)"	GC_rich|Low_complexity|Low_complexity	1121	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr15.41685483.-	chr15	41685483	41685484	-	0	NA	"intron (NM_016013, intron 3 of 4)"	AluSx|SINE|Alu	-9175	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr5.57859838.+	chr5	57859838	57859839	+	0	NA	Intergenic	SVA_A|Other|Other	-19101	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chrM.6576.-	chrM	6576	6577	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr18.14856552.+	chr18	14856552	14856553	+	0	NA	Intergenic	SVA_F|Other|Other	26387	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	miscRNA
chr7.158268167.+	chr7	158268167	158268168	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57338	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr9.137588858.+	chr9	137588858	137588859	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55206	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr5.2391210.+	chr5	2391210	2391211	+	0	NA	Intergenic	Intergenic	360559	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr6.45365113.+	chr6	45365113	45365114	+	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	-19325	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr12.65049569.-	chr12	65049569	65049570	-	0	NA	"intron (NR_040718, intron 1 of 3)"	AluSx1|SINE|Alu	33184	NR_037515	100500856		NR_037515		MIR548Z	-	microRNA 548z	miscRNA
chr19.50670116.-	chr19	50670116	50670117	-	0	NA	Intergenic	AluSg|SINE|Alu	3578	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr18.7005562.+	chr18	7005562	7005563	+	0	NA	"intron (NM_005559, intron 29 of 62)"	AluSx1|SINE|Alu	-75694	NR_034100	400643	Hs.253920	NM_001103383	ENSG00000265933	LINC00668	-	long intergenic non-protein coding RNA 668	miscRNA
chr16.2238512.+	chr16	2238512	2238513	+	0	NA	"intron (NM_020764, intron 6 of 19)"	AluJo|SINE|Alu	7953	NM_020764	57524	Hs.643537	NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
chrX.46794151.+	chrX	46794151	46794152	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22283	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr4.49325153.+	chr4	49325153	49325154	+	0	NA	Intergenic	ACRO1|Satellite|acro	336888	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr8.71581369.-	chr8	71581369	71581370	-	0	NA	promoter-TSS (NM_016027)	promoter-TSS (NM_016027)	-78	NM_016027	51110	Hs.118554	NM_016027	ENSG00000147592	LACTB2	-	"lactamase, beta 2"	protein-coding
chr12.95549219.+	chr12	95549219	95549220	+	0	NA	"intron (NM_018351, intron 3 of 20)"	AluSx|SINE|Alu	62021	NM_018351	55785	Hs.506381	NM_018351	ENSG00000180263	FGD6	ZFYVE24	"FYVE, RhoGEF and PH domain containing 6"	protein-coding
chr1.171662964.+	chr1	171662964	171662965	+	0	NA	Intergenic	SVA_C|Other|Other	-41191	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr19.49529838.+	chr19	49529838	49529839	+	0	NA	Intergenic	AluSz|SINE|Alu	-2206	NM_000737	1082	Hs.743279	NM_000737	ENSG00000104827	CGB	CGB3|CGB5|CGB7|CGB8|hCGB	"chorionic gonadotropin, beta polypeptide"	protein-coding
chr11.118214118.+	chr11	118214118	118214119	+	0	NA	promoter-TSS (NM_000732)	promoter-TSS (NM_000732)	-659	NM_000732	915	Hs.504048	NM_000732	ENSG00000167286	CD3D	CD3-DELTA|T3D	"CD3d molecule, delta (CD3-TCR complex)"	protein-coding
chr5.28928054.-	chr5	28928054	28928055	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1077	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr6.141000384.+	chr6	141000384	141000385	+	0	NA	Intergenic	AluY|SINE|Alu	-4567	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr2.202092479.-	chr2	202092479	202092480	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5687	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr1.3022474.+	chr1	3022474	3022475	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22065	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr17.26336744.-	chr17	26336744	26336745	-	0	NA	Intergenic	AluSz|SINE|Alu	32944	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr7.1972265.-	chr7	1972265	1972266	-	0	NA	"intron (NM_001013836, intron 17 of 18)"	HAL1|LINE|L1	88376	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr11.6429149.+	chr11	6429149	6429150	+	0	NA	"intron (NM_001257324, intron 1 of 7)"	AluYb8|SINE|Alu	-2258	NM_001257320	322	Hs.372840	NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	protein-coding
chr10.35336412.-	chr10	35336412	35336413	-	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	-26846	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr6.114387670.+	chr6	114387670	114387671	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3629	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chr7.124427326.-	chr7	124427326	124427327	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3538	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr18.33543864.-	chr18	33543864	33543865	-	0	NA	Intergenic	AluY|SINE|Alu	8724	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr20.60833001.+	chr20	60833001	60833002	+	0	NA	"intron (NM_014835, intron 2 of 13)"	AluSx1|SINE|Alu	19421	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr11.67351053.+	chr11	67351053	67351054	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-13	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr1.11960065.-	chr1	11960065	11960066	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26420	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
chrX.46794128.-	chrX	46794128	46794129	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22260	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr15.91260504.+	chr15	91260504	91260505	+	0	NA	promoter-TSS (NM_000057)	promoter-TSS (NM_000057)	-75	NM_000057	641	Hs.725208	NM_000057	ENSG00000197299	BLM	BS|RECQ2|RECQL2|RECQL3	"Bloom syndrome, RecQ helicase-like"	protein-coding
chr10.42385286.-	chr10	42385286	42385287	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-478207	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr10.104209669.-	chr10	104209669	104209670	-	0	NA	promoter-TSS (NR_038938)	promoter-TSS (NR_038938)	-95	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr16.18995105.+	chr16	18995105	18995106	+	0	NA	promoter-TSS (NM_001160364)	promoter-TSS (NM_001160364)	-151	NM_024847	79905	Hs.531661	NM_001160364	ENSG00000170537	TMC7	-	transmembrane channel-like 7	protein-coding
chr2.32100889.-	chr2	32100889	32100890	-	0	NA	"intron (NM_015955, intron 7 of 8)"	AluSz|SINE|Alu	-134809	NM_015955	51072	Hs.444969	NM_001137602	ENSG00000162959	MEMO1	C2orf4|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
chr1.40330211.-	chr1	40330211	40330212	-	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	-18966	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr6.84954116.+	chr6	84954116	84954117	+	0	NA	Intergenic	SVA_D|Other|Other	-16781	NM_014895	22832	Hs.485865	NM_014895	ENSG00000135315	KIAA1009	C6orf84|QN1	KIAA1009	protein-coding
chr3.49047711.+	chr3	49047711	49047712	+	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	3074	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr7.158268164.-	chr7	158268164	158268165	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57341	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chrX.113575430.+	chrX	113575430	113575431	+	0	NA	Intergenic	AluJb|SINE|Alu	-243121	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr9.16855814.-	chr9	16855814	16855815	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14972	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr17.48630990.-	chr17	48630990	48630991	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6540	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr9.16748438.-	chr9	16748438	16748439	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122348	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr9.139872206.-	chr9	139872206	139872207	-	0	NA	"intron (NM_000954, intron 1 of 6)"	"intron (NM_000954, intron 1 of 6)"	-250	NM_000954	5730	Hs.446429	NM_000954	ENSG00000107317	PTGDS	L-PGDS|LPGDS|PDS|PGD2|PGDS|PGDS2	prostaglandin D2 synthase 21kDa (brain)	protein-coding
chr1.194872454.+	chr1	194872454	194872455	+	0	NA	Intergenic	AluSx|SINE|Alu	1679157	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr19.16957647.-	chr19	16957647	16957648	-	0	NA	"intron (NM_015260, intron 4 of 19)"	"intron (NM_015260, intron 4 of 19)"	-17438	NM_015260	23309	Hs.13999	NM_015260	ENSG00000127511	SIN3B	-	SIN3 transcription regulator homolog B (yeast)	protein-coding
chr17.65363607.+	chr17	65363607	65363608	+	0	NA	promoter-TSS (NM_002816)	promoter-TSS (NM_002816)	-886	NM_002816	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr3.124468908.-	chr3	124468908	124468909	-	0	NA	TTS (NM_000373)	TTS (NM_000373)	-19695	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr18.46969442.+	chr18	46969442	46969443	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17637	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr10.135270894.-	chr10	135270894	135270895	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3462	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr21.43198270.-	chr21	43198270	43198271	-	0	NA	Intergenic	Intergenic	11021	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr18.12308045.-	chr18	12308045	12308046	-	0	NA	promoter-TSS (NM_032525)	promoter-TSS (NM_032525)	212	NM_032525	84617	Hs.744066	NM_032525	ENSG00000176014	TUBB6	HsT1601|TUBB-5	"tubulin, beta 6 class V"	protein-coding
chr7.111846972.+	chr7	111846972	111846973	+	0	NA	promoter-TSS (NM_014705)	promoter-TSS (NM_014705)	329	NM_021994	11179	Hs.655904	NM_021994		ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
chr8.1321567.+	chr8	1321567	1321568	+	0	NA	Intergenic	CpG	-70740	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr8.94845587.-	chr8	94845587	94845588	-	0	NA	Intergenic	SVA_A|Other|Other	-78515	NM_001142301	91147	Hs.116240	NM_001142301	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
chr2.239058224.+	chr2	239058224	239058225	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10861	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr20.33283468.-	chr20	33283468	33283469	-	0	NA	Intergenic	AluY|SINE|Alu	8680	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr7.45775920.+	chr7	45775920	45775921	+	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	32697	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr19.6945094.-	chr19	6945094	6945095	-	0	NA	Intergenic	AluY|SINE|Alu	-45763	NR_024075	326342	Hs.688043	NR_024075	ENSG00000268758	EMR4P	EMR4|FIRE|GPR127|PGR16	"egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene"	pseudo
chr4.126736801.+	chr4	126736801	126736802	+	0	NA	Intergenic	AluY|SINE|Alu	308387	NR_031746	100302267		NR_031746		MIR2054	hsa-mir-2054	microRNA 2054	miscRNA
chrY.13463322.-	chrY	13463322	13463323	-	0	NA	Intergenic	CpG	-1070067	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr2.905812.+	chr2	905812	905813	+	0	NA	Intergenic	Intergenic	-40742	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr9.10974641.+	chr9	10974641	10974642	+	0	NA	Intergenic	L1PBa|LINE|L1	-361918	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr4.1626682.+	chr4	1626682	1626683	+	0	NA	Intergenic	CpG	59036	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr8.49546680.-	chr8	49546680	49546681	-	0	NA	Intergenic	AluSg|SINE|Alu	-101190	NM_024593	79645	Hs.23245	NM_001142857	ENSG00000034239	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
chr8.90586395.-	chr8	90586395	90586396	-	0	NA	Intergenic	AluY|SINE|Alu	183580	NM_003821	8767	Hs.103755	NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor-interacting serine-threonine kinase 2	protein-coding
chr21.42048863.-	chr21	42048863	42048864	-	0	NA	"intron (NM_001389, intron 3 of 32)"	"intron (NM_001389, intron 3 of 32)"	46170	NR_046774	100874326	Hs.679746	NR_046774		DSCAM-IT1	zag4	DSCAM intronic transcript 1 (non-protein coding)	miscRNA
chr12.1044017.+	chr12	1044017	1044018	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14846	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr2.216176673.-	chr2	216176673	216176674	-	0	NA	promoter-TSS (NM_004044)	promoter-TSS (NM_004044)	6	NM_004044	471	Hs.90280	NM_004044	ENSG00000138363	ATIC	AICAR|AICARFT|IMPCHASE|PURH	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding
chr8.10386076.-	chr8	10386076	10386077	-	0	NA	"intron (NM_198464, intron 1 of 4)"	"intron (NM_198464, intron 1 of 4)"	-3020	NM_198464	203074	Hs.591394	NM_001197020	ENSG00000184647	PRSS55	T-SP1|UNQ9391	"protease, serine, 55"	protein-coding
chr5.76115687.+	chr5	76115687	76115688	+	0	NA	"intron (NM_005242, intron 1 of 1)"	CpG	854	NM_005242	2150	Hs.744181	NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	coagulation factor II (thrombin) receptor-like 1	protein-coding
chr16.4337499.-	chr16	4337499	4337500	-	0	NA	Intergenic	AluSq2|SINE|Alu	14498	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4 (activating enhancer binding protein 4)	protein-coding
chr1.27878500.-	chr1	27878500	27878501	-	0	NA	"exon (NM_001029882, exon 6 of 7)"	"exon (NM_001029882, exon 6 of 7)"	-51643	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	CL23945|DJ159A19.3|RP1-159A19.1	"AT hook, DNA binding motif, containing 1"	protein-coding
chr17.40543780.+	chr17	40543780	40543781	+	0	NA	Intergenic	AluJr4|SINE|Alu	-3267	NM_139276	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr11.16587522.-	chr11	16587522	16587523	-	0	NA	Intergenic	AluY|SINE|Alu	89587	NM_033326	55553	Hs.368226	NM_001145811	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
chr5.137688595.-	chr5	137688595	137688596	-	0	NA	"exon (NM_016604, exon 1 of 24)"	"exon (NM_016604, exon 1 of 24)"	-310	NM_016604	51780	Hs.744155	NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|JMJD1B|NET22	lysine (K)-specific demethylase 3B	protein-coding
chr7.13459488.-	chr7	13459488	13459489	-	0	NA	Intergenic	AluY|SINE|Alu	-566651	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr18.77627524.-	chr18	77627524	77627525	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3856	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr16.68573289.-	chr16	68573289	68573290	-	0	NA	promoter-TSS (NM_133458)	promoter-TSS (NM_133458)	372	NM_133458	146198	Hs.709017	NM_133458	ENSG00000184939	ZFP90	NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
chr16.81156384.+	chr16	81156384	81156385	+	0	NA	"intron (NM_052892, intron 37 of 42)"	AluSq2|SINE|Alu	-26404	NM_004483	2653	Hs.546256	NM_004483	ENSG00000140905	GCSH	GCE|NKH	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
chr10.126538780.-	chr10	126538780	126538781	-	0	NA	Intergenic	AluSx|SINE|Alu	-48426	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr1.54775790.-	chr1	54775790	54775791	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96189	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr3.50701703.+	chr3	50701703	50701704	+	0	NA	Intergenic	AluY|SINE|Alu	-10808	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr13.23713115.-	chr13	23713115	23713116	-	0	NA	Intergenic	AluY|SINE|Alu	41945	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr19.41118035.-	chr19	41118035	41118036	-	0	NA	"exon (NM_001042544, exon 18 of 33)"	"exon (NM_001042544, exon 18 of 33)"	-10758	NM_001042545	8425	Hs.466766	NM_001042544	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
chr15.22397734.+	chr15	22397734	22397735	+	0	NA	Intergenic	AluY|SINE|Alu	15261	NM_001005241	283694	Hs.525666	NM_001005241		OR4N4	OR15-1|OR15-5	"olfactory receptor, family 4, subfamily N, member 4"	protein-coding
chr4.174023300.-	chr4	174023300	174023301	-	0	NA	Intergenic	Harlequin-int|LTR|ERV1	66604	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
chr9.34628936.-	chr9	34628936	34628937	-	0	NA	promoter-TSS (NM_001017363)	promoter-TSS (NM_001017363)	925	NM_001017363	138715	Hs.534549	NM_001017363	ENSG00000205143	ARID3C	-	AT rich interactive domain 3C (BRIGHT-like)	protein-coding
chr12.112426260.-	chr12	112426260	112426261	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24763	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr10.120841969.+	chr10	120841969	120841970	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1635	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr1.40259997.-	chr1	40259997	40259998	-	0	NA	Intergenic	AluY|SINE|Alu	5464	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr22.51171310.-	chr22	51171310	51171311	-	0	NA	"3' UTR (NM_033517, exon 22 of 22)"	"3' UTR (NM_033517, exon 22 of 22)"	5342	NM_001097	49	Hs.370870	NM_001097	ENSG00000100312	ACR	-	acrosin	protein-coding
chr3.102973953.+	chr3	102973953	102973954	+	0	NA	Intergenic	SVA_D|Other|Other	820094	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr3.125931963.+	chr3	125931963	125931964	+	0	NA	Intergenic	CpG	-31934	NM_001270364	10840	Hs.434435	NM_001270364	ENSG00000144908	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	"aldehyde dehydrogenase 1 family, member L1"	protein-coding
chr5.180618849.-	chr5	180618849	180618850	-	0	NA	Intergenic	CpG	-9081	NM_203297	81786	Hs.487412	NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
chr8.43274647.-	chr8	43274647	43274648	-	0	NA	Intergenic	SVA_D|Other|Other	-127062	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr16.1332172.-	chr16	1332172	1332173	-	0	NA	Intergenic	AluSx|SINE|Alu	-25899	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr7.61969340.+	chr7	61969340	61969341	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795094	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr22.42027284.+	chr22	42027284	42027285	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9989	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr3.128194221.-	chr3	128194221	128194222	-	0	NA	Intergenic	Intergenic	8130	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr10.14903933.-	chr10	14903933	14903934	-	0	NA	"intron (NM_016299, intron 10 of 13)"	AluSc|SINE|Alu	16849	NR_034181	79723	Hs.554883	NM_001193424	ENSG00000152455	SUV39H2	KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding
chr9.77401529.-	chr9	77401529	77401530	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100734	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr4.177247213.-	chr4	177247213	177247214	-	0	NA	"intron (NM_021928, intron 3 of 4)"	AluSx|SINE|Alu	-6123	NM_021928	60559	Hs.42194	NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22/23|SPC3|YLR066W	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
chr19.36744770.-	chr19	36744770	36744771	-	0	NA	Intergenic	AluY|SINE|Alu	38784	NM_001042474	147929	Hs.596338	NM_001042474	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
chr17.72262262.+	chr17	72262262	72262263	+	0	NA	Intergenic	AluJb|SINE|Alu	-8124	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr7.66137132.-	chr7	66137132	66137133	-	0	NA	Intergenic	AluY|SINE|Alu	-43264	NM_001167961	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr3.1144529.+	chr3	1144529	1144530	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9900	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chrX.117828390.-	chrX	117828390	117828391	-	0	NA	Intergenic	AluSx|SINE|Alu	33169	NM_001560	3597	Hs.496646	NM_001560	ENSG00000131724	IL13RA1	CD213A1|IL-13Ra|NR4	"interleukin 13 receptor, alpha 1"	protein-coding
chr10.135075285.+	chr10	135075285	135075286	+	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	-14161	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr16.65697054.-	chr16	65697054	65697055	-	0	NA	Intergenic	AluY|SINE|Alu	86851	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LOC283867	-	uncharacterized LOC283867	miscRNA
chr22.18193158.-	chr22	18193158	18193159	-	0	NA	"intron (NM_001270733, intron 1 of 1)"	AluSz|SINE|Alu	-3734	NM_001270733	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr2.30144474.+	chr2	30144474	30144475	+	0	NA	promoter-TSS (NM_004304)	promoter-TSS (NM_004304)	3	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr19.8599190.+	chr19	8599190	8599191	+	0	NA	"intron (NM_012335, intron 19 of 27)"	(TTTTC)n|Simple_repeat|Simple_repeat	-20142	NM_001146175	84330	Hs.515114	NM_001146175	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
chr14.34924285.+	chr14	34924285	34924286	+	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	7183	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr2.101214311.+	chr2	101214311	101214312	+	0	NA	Intergenic	AluY|SINE|Alu	34893	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.113642149.-	chr2	113642149	113642150	-	0	NA	Intergenic	AluJb|SINE|Alu	28399	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr17.74707130.+	chr17	74707130	74707131	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-74	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr10.118500913.-	chr10	118500913	118500914	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1172	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr7.33164253.-	chr7	33164253	33164254	-	0	NA	Intergenic	AluYf5|SINE|Alu	4899	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr4.166248530.-	chr4	166248530	166248531	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	288	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr6.167600175.-	chr6	167600175	167600176	-	0	NA	Intergenic	Intergenic	-16094	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr20.45571661.+	chr20	45571661	45571662	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48398	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr13.99373202.-	chr13	99373202	99373203	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31727	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr17.2311352.-	chr17	2311352	2311353	-	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	7094	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr9.139513540.-	chr9	139513540	139513541	-	0	NA	Intergenic	Intergenic	39768	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr11.47284124.-	chr11	47284124	47284125	-	0	NA	"intron (NM_001130102, intron 6 of 8)"	AluSz|SINE|Alu	-4656	NM_005693	10062	Hs.438863	NM_001130101	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	"nuclear receptor subfamily 1, group H, member 3"	protein-coding
chr7.2943540.-	chr7	2943540	2943541	-	0	NA	Intergenic	Intergenic	59581	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr19.47507409.+	chr19	47507409	47507410	+	0	NA	"3' UTR (NM_004491, exon 6 of 6)"	"3' UTR (NM_004491, exon 6 of 6)"	-16734	NM_002517	4861	Hs.79564	NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
chrX.153657097.-	chrX	153657097	153657098	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-119	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr2.10163550.+	chr2	10163550	10163551	+	0	NA	Intergenic	Intergenic	-20132	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr3.22843185.+	chr3	22843185	22843186	+	0	NA	Intergenic	L1PA2|LINE|L1	-401599	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chrX.54371335.+	chrX	54371335	54371336	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13103	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr5.10564493.-	chr5	10564493	10564494	-	0	NA	promoter-TSS (NM_001164440)	promoter-TSS (NM_001164440)	-58	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chr19.49186311.+	chr19	49186311	49186312	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10047	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr7.2443924.-	chr7	2443924	2443925	-	0	NA	"intron (NM_018641, intron 1 of 1)"	CpG	-729	NM_018641	55501	Hs.213088	NM_001243794	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate (chondroitin 4) sulfotransferase 12	protein-coding
chr13.112722077.-	chr13	112722077	112722078	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-164	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr6.151727644.-	chr6	151727644	151727645	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14967	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr19.3219056.-	chr19	3219056	3219057	-	0	NA	Intergenic	AluY|SINE|Alu	5645	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr3.9398191.+	chr3	9398191	9398192	+	0	NA	Intergenic	AluY|SINE|Alu	-6526	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr3.102974058.+	chr3	102974058	102974059	+	0	NA	Intergenic	SVA_D|Other|Other	820199	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr10.134411389.-	chr10	134411389	134411390	-	0	NA	"intron (NM_005539, intron 1 of 15)"	CpG	-60036	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr1.40367257.-	chr1	40367257	40367258	-	0	NA	"5' UTR (NM_001033081, exon 1 of 2)"	"5' UTR (NM_001033081, exon 1 of 2)"	-430	NM_005376	4610	Hs.437922	NM_001033081	ENSG00000116990	MYCL1	LMYC|MYCL|bHLHe38	"v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)"	protein-coding
chr7.158284913.-	chr7	158284913	158284914	-	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	-40592	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr19.33554699.-	chr19	33554699	33554700	-	0	NA	"intron (NM_033103, intron 1 of 14)"	"intron (NM_033103, intron 1 of 14)"	-1125	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr17.80674960.-	chr17	80674960	80674961	-	0	NA	"intron (NM_024619, intron 1 of 5)"	CpG	-378	NM_024619	79672	Hs.31431	NM_024619	ENSG00000141560	FN3KRP	FN3KL	fructosamine 3 kinase related protein	protein-coding
chrX.122993636.-	chrX	122993636	122993637	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	26	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr6.126111898.+	chr6	126111898	126111899	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-11	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr22.46326761.-	chr22	46326761	46326762	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46247	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr12.33352576.+	chr12	33352576	33352577	+	0	NA	Intergenic	LTR12|LTR|ERV1	240178	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr21.43430696.+	chr21	43430696	43430697	+	0	NA	promoter-TSS (NM_001098402)	promoter-TSS (NM_001098402)	-200	NM_020727	49854	Hs.618406	NM_001098402	ENSG00000173276	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding
chr7.32427415.-	chr7	32427415	32427416	-	0	NA	Intergenic	SVA_E|Other|Other	-70691	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
chr12.53369501.-	chr12	53369501	53369502	-	0	NA	Intergenic	Intergenic	25851	NM_001256293	3856	Hs.708445	NM_001256282	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
chrX.133328815.+	chrX	133328815	133328816	+	0	NA	Intergenic	AluSg|SINE|Alu	-24507	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr7.109212721.+	chr7	109212721	109212722	+	0	NA	Intergenic	AluSz|SINE|Alu	387549	NR_003024	442720	Hs.535194	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	"eukaryotic translation initiation factor 3, subunit I pseudogene 1"	pseudo
chr4.2270636.-	chr4	2270636	2270637	-	0	NA	TTS (NM_001172659)	TTS (NM_001172659)	6897	NM_006454	10608	Hs.655020	NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
chr9.1141623.+	chr9	1141623	1141624	+	0	NA	Intergenic	AluY|SINE|Alu	91003	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr16.70133264.-	chr16	70133264	70133265	-	0	NA	Intergenic	AluY|SINE|Alu	14265	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr16.8974155.+	chr16	8974155	8974156	+	0	NA	Intergenic	Intergenic	-11292	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr2.43254044.+	chr2	43254044	43254045	+	0	NA	Intergenic	Intergenic	199701	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr9.95526673.+	chr9	95526673	95526674	+	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	410	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr11.61606635.-	chr11	61606635	61606636	-	0	NA	"intron (NM_004265, intron 2 of 11)"	"intron (NM_004265, intron 2 of 11)"	-10922	NM_004265	9415	Hs.502745	NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
chr8.1321569.+	chr8	1321569	1321570	+	0	NA	Intergenic	CpG	-70742	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr1.54966396.-	chr1	54966396	54966397	-	0	NA	Intergenic	AluSq|SINE|Alu	47411	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr17.38406655.-	chr17	38406655	38406656	-	0	NA	"intron (NM_133264, intron 1 of 7)"	AluY|SINE|Alu	-31081	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr21.47485678.-	chr21	47485678	47485679	-	0	NA	Intergenic	Intergenic	32355	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr12.132313488.+	chr12	132313488	132313489	+	0	NA	"intron (NM_016155, intron 1 of 9)"	CpG	547	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr14.39018138.-	chr14	39018138	39018139	-	0	NA	Intergenic	AluYa5|SINE|Alu	292563	NM_175060	161198	Hs.525307	NM_175060	ENSG00000176435	CLEC14A	C14orf27|CEG1|EGFR-5	"C-type lectin domain family 14, member A"	protein-coding
chr15.100514122.+	chr15	100514122	100514123	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-166990	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr20.5213486.-	chr20	5213486	5213487	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81529	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr16.3109391.+	chr16	3109391	3109392	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5922	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr20.45952944.-	chr20	45952944	45952945	-	0	NA	"intron (NM_183047, intron 2 of 22)"	AluSc|SINE|Alu	-5698	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr2.202045969.-	chr2	202045969	202045970	-	0	NA	Intergenic	Intergenic	1652	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr11.67620863.-	chr11	67620863	67620864	-	0	NA	Intergenic	HERVE-int|LTR|ERV1	48056	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr1.156448365.+	chr1	156448365	156448366	+	0	NA	"intron (NM_005920, intron 6 of 11)"	AluSp|SINE|Alu	12026	NM_001271629	4209	Hs.744524	NM_001271629	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
chr12.117605449.-	chr12	117605449	117605450	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22851	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr7.139900640.+	chr7	139900640	139900641	+	0	NA	Intergenic	AluSx1|SINE|Alu	23579	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	LOC100134229	-	uncharacterized LOC100134229	miscRNA
chr5.86907785.-	chr5	86907785	86907786	-	0	NA	Intergenic	AluY|SINE|Alu	198935	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr8.128552624.+	chr8	128552624	128552625	+	0	NA	Intergenic	AluY|SINE|Alu	-58240	NR_024393	727677	Hs.736625	NR_024393	ENSG00000246228	LOC727677	-	uncharacterized LOC727677	miscRNA
chr2.113914944.-	chr2	113914944	113914945	-	0	NA	Intergenic	CpG	16616	NM_012455	23550	Hs.516306	NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
chr14.105158926.-	chr14	105158926	105158927	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2983	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr3.31574023.+	chr3	31574023	31574024	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-468	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr1.28099694.+	chr1	28099694	28099695	+	0	NA	promoter-TSS (NM_177424)	promoter-TSS (NM_177424)	0	NM_177424	23673	Hs.523855	NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
chr17.12456646.+	chr17	12456646	12456647	+	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	3361	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr16.84754496.-	chr16	84754496	84754497	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	"intron (NM_001272075, intron 2 of 14)"	-20941	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr1.43612766.+	chr1	43612766	43612767	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-828	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chrM.16400.+	chrM	16400	16401	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.2858362.-	chr12	2858362	2858363	-	0	NA	Intergenic	L1P3|LINE|L1	-22473	NR_033958	283440	Hs.658536	NR_033958	ENSG00000255669	LOC283440	-	uncharacterized LOC283440	miscRNA
chrX.39680386.+	chrX	39680386	39680387	+	0	NA	Intergenic	CpG	276333	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr3.53225242.+	chr3	53225242	53225243	+	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	30019	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr10.85918849.-	chr10	85918849	85918850	-	0	NA	Intergenic	Intergenic	14705	NM_207373	387695	Hs.499145	NM_207373	ENSG00000188373	C10orf99	UNQ1833	chromosome 10 open reading frame 99	protein-coding
chr10.8150596.+	chr10	8150596	8150597	+	0	NA	Intergenic	AluY|SINE|Alu	53929	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr15.43273011.+	chr15	43273011	43273012	+	0	NA	"intron (NM_174916, intron 37 of 46)"	AluJb|SINE|Alu	-60004	NM_173500	146057	Hs.727864	NM_173500		TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
chr3.192348632.+	chr3	192348632	192348633	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96756	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr15.90327986.+	chr15	90327986	90327987	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8397	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr3.36494731.-	chr3	36494731	36494732	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72634	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr12.106477562.-	chr12	106477562	106477563	-	0	NA	"intron (NM_014840, intron 4 of 6)"	"intron (NM_014840, intron 4 of 6)"	-56249	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr9.10974557.+	chr9	10974557	10974558	+	0	NA	Intergenic	L1PBa|LINE|L1	-361834	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.6051337.+	chr1	6051337	6051338	+	0	NA	"intron (NM_015102, intron 1 of 29)"	"intron (NM_015102, intron 1 of 29)"	-1021	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr10.133203418.-	chr10	133203418	133203419	-	0	NA	Intergenic	Intergenic	93434	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr2.105472058.-	chr2	105472058	105472059	-	0	NA	promoter-TSS (NM_006236)	promoter-TSS (NM_006236)	-89	NM_006236	5455	Hs.673855	NM_006236		POU3F3	BRN1|OTF8	POU class 3 homeobox 3	protein-coding
chrX.18117008.-	chrX	18117008	18117009	-	0	NA	Intergenic	Intergenic	-122016	NM_153346	139105	Hs.403802	NM_001184767	ENSG00000177324	BEND2	CXorf20	BEN domain containing 2	protein-coding
chr16.9185061.+	chr16	9185061	9185062	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-476	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr5.140564.-	chr5	140564	140565	-	0	NA	"exon (NM_052909, exon 1 of 18)"	"exon (NM_052909, exon 1 of 18)"	-191	NM_052909	153478	Hs.535800	NM_052909		PLEKHG4B	-	"pleckstrin homology domain containing, family G (with RhoGef domain) member 4B"	protein-coding
chr19.20713424.+	chr19	20713424	20713425	+	0	NA	Intergenic	SVA_D|Other|Other	35202	NM_001159293	100129842	Hs.515696	NM_001159293		ZNF737	ZNF102	zinc finger protein 737	protein-coding
chr7.45775953.-	chr7	45775953	45775954	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32664	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr11.598321.-	chr11	598321	598322	-	0	NA	"intron (NM_020901, intron 8 of 17)"	"intron (NM_020901, intron 8 of 17)"	-17407	NM_004031	3665	Hs.166120	NM_001572	ENSG00000185507	IRF7	IRF-7H|IRF7A	interferon regulatory factor 7	protein-coding
chr10.4887122.-	chr10	4887122	4887123	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18753	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr4.42658264.-	chr4	42658264	42658265	-	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	-858	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr15.41613112.-	chr15	41613112	41613113	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11707	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr12.8777867.-	chr12	8777867	8777868	-	0	NA	Intergenic	Intergenic	12425	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr2.45870923.-	chr2	45870923	45870924	-	0	NA	Intergenic	CpG	8120	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	"protein kinase C, epsilon"	protein-coding
chr3.47744708.+	chr3	47744708	47744709	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78697	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr17.4488394.-	chr17	4488394	4488395	-	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	-560	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chrX.32910767.+	chrX	32910767	32910768	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127550	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr6.43016794.+	chr6	43016794	43016795	+	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	4889	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr19.48381907.-	chr19	48381907	48381908	-	0	NA	"intron (NM_003167, intron 4 of 5)"	AluSg4|SINE|Alu	-7747	NM_003167	6822	Hs.515835	NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa	"sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1"	protein-coding
chr13.83333893.-	chr13	83333893	83333894	-	0	NA	Intergenic	AluYb8|SINE|Alu	-1122635	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr9.11197052.+	chr9	11197052	11197053	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584329	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.197418608.+	chr1	197418608	197418609	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181274	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr9.137240508.+	chr9	137240508	137240509	+	0	NA	"intron (NM_002957, intron 1 of 9)"	"intron (NM_002957, intron 1 of 9)"	22192	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr11.777467.+	chr11	777467	777468	+	0	NA	promoter-TSS (NM_182612)	promoter-TSS (NM_182612)	20	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr3.36421965.-	chr3	36421965	36421966	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	132	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr2.20424063.+	chr2	20424063	20424064	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	864	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr1.205674979.-	chr1	205674979	205674980	-	0	NA	Intergenic	AluY|SINE|Alu	25349	NM_033102	85414	Hs.278695	NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	"solute carrier family 45, member 3"	protein-coding
chr19.49748216.+	chr19	49748216	49748217	+	0	NA	Intergenic	AluSx3|SINE|Alu	63909	NR_036209	100422979		NR_036209		MIR4324	-	microRNA 4324	miscRNA
chr1.29450988.+	chr1	29450988	29450989	+	0	NA	promoter-TSS (NM_001003682)	promoter-TSS (NM_001003682)	-567	NM_001003682	399474	Hs.712722	NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
chr9.138994831.-	chr9	138994831	138994832	-	0	NA	Intergenic	AluY|SINE|Alu	7700	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr16.28435251.+	chr16	28435251	28435252	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2524	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr6.119182266.+	chr6	119182266	119182267	+	0	NA	"intron (NM_017696, intron 6 of 11)"	MER52A|LTR|ERV1	-32975	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	protein-coding
chr14.102954946.-	chr14	102954946	102954947	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21182	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr17.78559346.+	chr17	78559346	78559347	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40721	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr16.84513587.-	chr16	84513587	84513588	-	0	NA	"exon (NM_020947, exon 8 of 8)"	"exon (NM_020947, exon 8 of 8)"	-24701	NM_020947	57707	Hs.288274	NM_020947		TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
chrX.69654660.+	chrX	69654660	69654661	+	0	NA	Intergenic	CpG	-10045	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr18.77627512.-	chr18	77627512	77627513	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3844	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr11.67776281.-	chr11	67776281	67776282	-	0	NA	"intron (NM_001161473, intron 1 of 9)"	"intron (NM_001161473, intron 1 of 9)"	-233	NM_001161473	221	Hs.523841	NM_000694		ALDH3B1	ALDH4|ALDH7	"aldehyde dehydrogenase 3 family, member B1"	protein-coding
chr4.45824624.-	chr4	45824624	45824625	-	0	NA	Intergenic	AluY|SINE|Alu	-301458	NM_173536	2565	Hs.375051	NM_173536	ENSG00000163285	GABRG1	-	"gamma-aminobutyric acid (GABA) A receptor, gamma 1"	protein-coding
chr10.94709461.-	chr10	94709461	94709462	-	0	NA	"intron (NM_001013848, intron 14 of 21)"	AluSq2|SINE|Alu	-101236	NM_019053	54536	Hs.655657	NM_001013848	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
chr10.135031502.+	chr10	135031502	135031503	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12276	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr3.164852002.-	chr3	164852002	164852003	-	0	NA	Intergenic	AluY|SINE|Alu	55719	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr6.126112000.-	chr6	126112000	126112001	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-91	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr20.62052656.+	chr20	62052656	62052657	+	0	NA	"intron (NM_172107, intron 11 of 16)"	"intron (NM_172107, intron 11 of 16)"	51337	NM_004518	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr10.125228149.-	chr10	125228149	125228150	-	0	NA	Intergenic	AluY|SINE|Alu	197722	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr6.143858975.+	chr6	143858975	143858976	+	0	NA	Intergenic	AluSx3|SINE|Alu	24210	NR_027114	285740	Hs.432656	NR_027113		LOC285740	-	uncharacterized LOC285740	miscRNA
chr16.89034202.+	chr16	89034202	89034203	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9302	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr10.98956285.+	chr10	98956285	98956286	+	0	NA	"intron (NR_037909, intron 11 of 14)"	CpG	-10602	NM_003061	6585	Hs.632082	NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit homolog 1 (Drosophila)	protein-coding
chr12.67941936.-	chr12	67941936	67941937	-	0	NA	Intergenic	AluY|SINE|Alu	100576	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr5.28928040.-	chr5	28928040	28928041	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1063	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr7.155246321.-	chr7	155246321	155246322	-	0	NA	Intergenic	Intergenic	4503	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr6.114067439.-	chr6	114067439	114067440	-	0	NA	Intergenic	AluY|SINE|Alu	111088	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr2.225533522.+	chr2	225533522	225533523	+	0	NA	Intergenic	AluSx|SINE|Alu	-83408	NM_001257197	8452	Hs.372286	NM_001257197	ENSG00000036257	CUL3	CUL-3|PHA2E	cullin 3	protein-coding
chr7.35225517.+	chr7	35225517	35225518	+	0	NA	"non-coding (NR_002833, exon 1 of 22)"	"non-coding (NR_002833, exon 1 of 22)"	257	NR_002833	554236	Hs.594815	NR_002833		DPY19L2P1	-	dpy-19-like 2 pseudogene 1 (C. elegans)	pseudo
chr20.57575074.+	chr20	57575074	57575075	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7235	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr14.105116583.-	chr14	105116583	105116584	-	0	NA	Intergenic	CpG	-27503	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr11.45810350.+	chr11	45810350	45810351	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15273	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr14.74708125.-	chr14	74708125	74708126	-	0	NA	"intron (NM_182894, intron 2 of 4)"	CpG-7195	-1950	NM_182894	338917	Hs.449771	NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
chr7.13141840.+	chr7	13141840	13141841	+	0	NA	Intergenic	SVA_D|Other|Other	414929	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr1.53335576.-	chr1	53335576	53335577	-	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	-27393	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr18.73357750.-	chr18	73357750	73357751	-	0	NA	Intergenic	L2|LINE|L2	218161	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chrX.137770382.-	chrX	137770382	137770383	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20428	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr13.23734804.+	chr13	23734804	23734805	+	0	NA	Intergenic	CpG	-20256	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr19.411335.+	chr19	411335	411336	+	0	NA	Intergenic	Intergenic	-2165	NM_001136263	126567	Hs.223770	NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium-dependent domain containing 4C	protein-coding
chrM.804.+	chrM	804	805	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.142795209.-	chr6	142795209	142795210	-	0	NA	Intergenic	AluSc|SINE|Alu	-163764	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr7.394758.+	chr7	394758	394759	+	0	NA	Intergenic	Intergenic	-24633	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr6.89377973.+	chr6	89377973	89377974	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295375	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr2.221058177.-	chr2	221058177	221058178	-	0	NA	Intergenic	MER52A|LTR|ERV1	286891	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr6.45365122.+	chr6	45365122	45365123	+	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	-19334	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr9.136941007.+	chr9	136941007	136941008	+	0	NA	Intergenic	SVA_B|Other|Other	-7866	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr11.100596529.-	chr11	100596529	100596530	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38122	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr5.39649165.+	chr5	39649165	39649166	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223830	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr3.8721148.+	chr3	8721148	8721149	+	0	NA	Intergenic	Intergenic	-27384	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr2.121244088.-	chr2	121244088	121244089	-	0	NA	Intergenic	Intergenic	20163	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr21.46383143.+	chr21	46383143	46383144	+	0	NA	"intron (NM_058190, intron 3 of 5)"	AluY|SINE|Alu	23188	NM_058190	85395	Hs.410830	NM_058190	ENSG00000160256	FAM207A	C21orf70	"family with sequence similarity 207, member A"	protein-coding
chr5.132165680.+	chr5	132165680	132165681	+	0	NA	"intron (NM_001172700, intron 1 of 9)"	CpG	910	NM_001172700	134549	Hs.519574	NM_001172700	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
chr19.7123170.+	chr19	7123170	7123171	+	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	53699	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr2.101924985.-	chr2	101924985	101924986	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-193	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr3.129868003.-	chr3	129868003	129868004	-	0	NA	Intergenic	HERVE-int|LTR|ERV1	37727	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr15.65370034.+	chr15	65370034	65370035	+	0	NA	"exon (NM_001101362, exon 1 of 1)"	"exon (NM_001101362, exon 1 of 1)"	880	NM_001101362	390594	Hs.586890	NM_001101362	ENSG00000234438	KBTBD13	HCG1645727|NEM6	kelch repeat and BTB (POZ) domain containing 13	protein-coding
chr5.178157712.-	chr5	178157712	178157713	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	9	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr12.50895290.+	chr12	50895290	50895291	+	0	NA	Intergenic	AluSp|SINE|Alu	-3478	NM_173602	57609	Hs.505516	NM_173602	ENSG00000066084	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
chr17.17985420.-	chr17	17985420	17985421	-	0	NA	Intergenic	AluSq|SINE|Alu	5761	NM_001388	1819	Hs.78582	NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
chr7.151348440.+	chr7	151348440	151348441	+	0	NA	"intron (NM_001040633, intron 4 of 15)"	AluSz|SINE|Alu	-19096	NM_024429	51422	Hs.647072	NM_001040633	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	"protein kinase, AMP-activated, gamma 2 non-catalytic subunit"	protein-coding
chr22.22550481.-	chr22	22550481	22550482	-	0	NA	Intergenic	Intergenic	48719	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr19.34623455.-	chr19	34623455	34623456	-	0	NA	Intergenic	SVA_D|Other|Other	39897	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr8.144124763.-	chr8	144124763	144124764	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4084	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr4.84864618.+	chr4	84864618	84864619	+	0	NA	Intergenic	SVA_D|Other|Other	407148	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr11.119091852.-	chr11	119091852	119091853	-	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	-14866	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr19.18942991.+	chr19	18942991	18942992	+	0	NA	"5' UTR (NM_002911, exon 1 of 24)"	"5' UTR (NM_002911, exon 1 of 24)"	247	NM_002911	5976	Hs.515266	NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|pNORF1|smg-2	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding
chr22.39437248.-	chr22	39437248	39437249	-	0	NA	"intron (NM_145298, intron 1 of 6)"	"intron (NM_145298, intron 1 of 6)"	-575	NM_001006666	200316	Hs.659809	NM_001006666		APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F"	protein-coding
chr17.1226039.-	chr17	1226039	1226040	-	0	NA	Intergenic	Intergenic	-43082	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr19.53979673.+	chr19	53979673	53979674	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8684	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr17.30414159.-	chr17	30414159	30414160	-	0	NA	Intergenic	FLAM_A|SINE|Alu	-46804	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
chr3.88595887.-	chr3	88595887	88595888	-	0	NA	Intergenic	AluSc8|SINE|Alu	396871	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr17.14204675.-	chr17	14204675	14204676	-	0	NA	"5' UTR (NM_006041, exon 1 of 2)"	"5' UTR (NM_006041, exon 1 of 2)"	-169	NM_006041	9953	Hs.48384	NM_006041		HS3ST3B1	30ST3B1|3OST3B1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding
chr8.22308544.-	chr8	22308544	22308545	-	0	NA	"intron (NM_001243975, intron 1 of 12)"	AluY|SINE|Alu	-10061	NM_001243974	5533	Hs.731683	NM_001243974	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	"protein phosphatase 3, catalytic subunit, gamma isozyme"	protein-coding
chr16.1200851.-	chr16	1200851	1200852	-	0	NA	Intergenic	Intergenic	2390	NM_021098	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr2.203879667.-	chr2	203879667	203879668	-	0	NA	promoter-TSS (NM_001114132)	promoter-TSS (NM_001114132)	-65	NM_001114132	65065	Hs.648846	NM_001099273	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin-like 1	protein-coding
chr4.1795416.+	chr4	1795416	1795417	+	0	NA	"intron (NM_000142, intron 1 of 17)"	CpG	377	NM_022965	2261	Hs.1420	NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
chr5.131817907.-	chr5	131817907	131817908	-	0	NA	"3' UTR (NM_002198, exon 10 of 10)"	"3' UTR (NM_002198, exon 10 of 10)"	-8558	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr1.114695808.-	chr1	114695808	114695809	-	0	NA	promoter-TSS (NM_205848)	promoter-TSS (NM_205848)	-664	NM_001270805	148281	Hs.736999	NM_001270805	ENSG00000134207	SYT6	sytVI	synaptotagmin VI	protein-coding
chr10.14851257.+	chr10	14851257	14851258	+	0	NA	Intergenic	AluY|SINE|Alu	28726	NM_001029954	441549	Hs.559067	NM_001029954		CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
chr6.100062327.+	chr6	100062327	100062328	+	0	NA	"exon (NM_021620, exon 4 of 4)"	"exon (NM_021620, exon 4 of 4)"	7677	NM_021620	59336	Hs.287386	NM_021620	ENSG00000112238	PRDM13	MU-MB-20.220|PFM10	PR domain containing 13	protein-coding
chr7.100963620.-	chr7	100963620	100963621	-	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	-1473	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr8.6022639.-	chr8	6022639	6022640	-	0	NA	Intergenic	AluY|SINE|Alu	-241430	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	miscRNA
chr2.64811857.-	chr2	64811857	64811858	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22589	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chrX.39680359.-	chrX	39680359	39680360	-	0	NA	Intergenic	CpG	-276360	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr12.38552960.+	chr12	38552960	38552961	+	0	NA	Intergenic	GSATX|Satellite|centr	-157597	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr19.4866047.-	chr19	4866047	4866048	-	0	NA	"intron (NM_005817, intron 1 of 7)"	AluSx1|SINE|Alu	-1733	NM_001164194	10226	Hs.140452	NM_001164189	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
chr3.109059747.+	chr3	109059747	109059748	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3328	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr5.1667729.-	chr5	1667729	1667730	-	0	NA	Intergenic	CpG	33609	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
chr2.130902787.-	chr2	130902787	130902788	-	0	NA	promoter-TSS (NM_001258307)	promoter-TSS (NM_001258307)	80	NM_207310	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chr5.25535454.+	chr5	25535454	25535455	+	0	NA	Intergenic	AluY|SINE|Alu	-694762	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr9.127902574.-	chr9	127902574	127902575	-	0	NA	"intron (NM_173690, intron 2 of 18)"	AluSx1|SINE|Alu	-3264	NM_173690	286205	Hs.59504	NM_001144877		SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
chr8.143681064.+	chr8	143681064	143681065	+	0	NA	Intergenic	Intergenic	14769	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr18.12734524.-	chr18	12734524	12734525	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31537	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr2.122494507.-	chr2	122494507	122494508	-	0	NA	promoter-TSS (NM_032390)	promoter-TSS (NM_032390)	4	NM_032390	84365	Hs.367842	NM_032390	ENSG00000155438	MKI67IP	NIFK|Nopp34	MKI67 (FHA domain) interacting nucleolar phosphoprotein	protein-coding
chr18.76189785.+	chr18	76189785	76189786	+	0	NA	Intergenic	CpG	-550490	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr8.26371340.-	chr8	26371340	26371341	-	0	NA	promoter-TSS (NM_001197293)	promoter-TSS (NM_001197293)	-143	NM_007257	10687	Hs.591838	NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	paraneoplastic Ma antigen 2	protein-coding
chr1.181058698.+	chr1	181058698	181058699	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1060	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr9.10786966.+	chr9	10786966	10786967	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174243	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr13.112597815.-	chr13	112597815	112597816	-	0	NA	Intergenic	MIRc|SINE|MIR	124098	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr10.104238479.+	chr10	104238479	104238480	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17309	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr7.66984547.-	chr7	66984547	66984548	-	0	NA	Intergenic	AluY|SINE|Alu	-216922	NR_040585	64940	Hs.632013	NM_022906	ENSG00000106610	STAG3L4	-	stromal antigen 3-like 4	pseudo
chr9.127626587.-	chr9	127626587	127626588	-	0	NA	Intergenic	AluSx|SINE|Alu	2347	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr7.1587800.+	chr7	1587800	1587801	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8266	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr1.103747515.-	chr1	103747515	103747516	-	0	NA	Intergenic	AluYa5|SINE|Alu	173463	NM_001854	1301	Hs.523446	NM_001190709	ENSG00000060718	COL11A1	CO11A1|COLL6|STL2	"collagen, type XI, alpha 1"	protein-coding
chr6.21897111.+	chr6	21897111	21897112	+	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	230436	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr12.126371219.+	chr12	126371219	126371220	+	0	NA	Intergenic	AluY|SINE|Alu	96701	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chrY.9930534.+	chrY	9930534	9930535	+	0	NA	Intergenic	5S|rRNA|rRNA	182127	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr17.45349567.+	chr17	45349567	45349568	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18359	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr2.136760845.-	chr2	136760845	136760846	-	0	NA	Intergenic	AluSq2|SINE|Alu	17623	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr8.6644923.+	chr8	6644923	6644924	+	0	NA	Intergenic	AluY|SINE|Alu	-42162	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr13.112726531.+	chr13	112726531	112726532	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4618	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr10.46964151.-	chr10	46964151	46964152	-	0	NA	"intron (NM_181519, intron 6 of 8)"	"intron (NM_181519, intron 6 of 8)"	-6450	NM_031912	83849	Hs.696346	NM_031912	ENSG00000204176	SYT15	CHR10SYT|sytXV	synaptotagmin XV	protein-coding
chr12.107112609.-	chr12	107112609	107112610	-	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	34131	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr10.134216458.+	chr10	134216458	134216459	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5756	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr12.132336765.+	chr12	132336765	132336766	+	0	NA	TTS (NM_016155)	TTS (NM_016155)	23824	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr14.92578728.-	chr14	92578728	92578729	-	0	NA	Intergenic	AluY|SINE|Alu	5763	NR_028453	4287	Hs.532632	NM_001127696	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
chr6.126100221.+	chr6	126100221	126100222	+	0	NA	Intergenic	AluY|SINE|Alu	-2086	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.114361275.+	chr2	114361275	114361276	+	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	19	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr9.34329089.-	chr9	34329089	34329090	-	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-109	NM_194313	347240	Hs.710246	NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
chr10.6985583.+	chr10	6985583	6985584	+	0	NA	Intergenic	AluSx1|SINE|Alu	164023	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr22.51001355.-	chr22	51001355	51001356	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	27	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr16.89608215.+	chr16	89608215	89608216	+	0	NA	"intron (NM_003119, intron 9 of 16)"	"intron (NM_003119, intron 9 of 16)"	-18850	NM_001243131	6137	Hs.410817	NM_000977		RPL13	BBC1|D16S444E|D16S44E|L13	ribosomal protein L13	protein-coding
chr1.151741994.-	chr1	151741994	151741995	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2863	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr13.112112770.-	chr13	112112770	112112771	-	0	NA	Intergenic	Intergenic	-139755	NM_152324	121793	Hs.210677	NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
chr1.183670883.-	chr1	183670883	183670884	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48435	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr12.49856939.+	chr12	49856939	49856940	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	73982	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr8.94805095.-	chr8	94805095	94805096	-	0	NA	"intron (NM_153704, intron 15 of 27)"	AluY|SINE|Alu	-38023	NM_001142301	91147	Hs.116240	NM_001142301	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
chr8.6644916.+	chr8	6644916	6644917	+	0	NA	Intergenic	AluY|SINE|Alu	-42155	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr12.121168071.+	chr12	121168071	121168072	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSg|SINE|Alu	4500	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr6.42510174.-	chr6	42510174	42510175	-	0	NA	Intergenic	AluY|SINE|Alu	21586	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr2.90481143.-	chr2	90481143	90481144	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1366832	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr19.13741895.-	chr19	13741895	13741896	-	0	NA	Intergenic	AluSc8|SINE|Alu	116858	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr4.178730123.-	chr4	178730123	178730124	-	0	NA	"intron (NR_028342, intron 2 of 5)"	AluY|SINE|Alu	-80212	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LOC285501	-	uncharacterized LOC285501	miscRNA
chr6.18371768.-	chr6	18371768	18371769	-	0	NA	Intergenic	AluSx1|SINE|Alu	15813	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
chr22.21022186.-	chr22	21022186	21022187	-	0	NA	Intergenic	CpG	21657	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr7.1570430.-	chr7	1570430	1570431	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-62	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr7.130418528.+	chr7	130418528	130418529	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	360	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr12.48399245.+	chr12	48399245	48399246	+	0	NA	promoter-TSS (NM_033150)	promoter-TSS (NM_033150)	-960	NM_033150	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC	"collagen, type II, alpha 1"	protein-coding
chr4.1023380.+	chr4	1023380	1023381	+	0	NA	Intergenic	Intergenic	17128	NM_021923	53834	Hs.193326	NM_001004356	ENSG00000127418	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
chr20.33005292.+	chr20	33005292	33005293	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48838	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr22.24621454.+	chr22	24621454	24621455	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19656	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr2.44294801.+	chr2	44294801	44294802	+	0	NA	Intergenic	SVA_D|Other|Other	-71657	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr19.18057768.+	chr19	18057768	18057769	+	0	NA	Intergenic	AluSx|SINE|Alu	-4343	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr3.178542418.+	chr3	178542418	178542419	+	0	NA	"intron (NM_005832, intron 3 of 5)"	AluY|SINE|Alu	247238	NM_152240	64393	Hs.371609	NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	"zinc finger, matrin-type 3"	protein-coding
chrY.13478066.+	chrY	13478066	13478067	+	0	NA	Intergenic	CpG	1055323	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr11.16894102.+	chr11	16894102	16894103	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133954	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr22.46504409.+	chr22	46504409	46504410	+	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	-4220	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr5.1067319.+	chr5	1067319	1067320	+	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	-4230	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr20.1317826.+	chr20	1317826	1317827	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-7947	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chrX.15026743.+	chrX	15026743	15026744	+	0	NA	Intergenic	AluY|SINE|Alu	123330	NM_001177475	158747	Hs.190043	NM_001177475		MOSPD2	-	motile sperm domain containing 2	protein-coding
chr3.38669138.-	chr3	38669138	38669139	-	0	NA	"intron (NM_000335, intron 3 of 27)"	AluSg7|SINE|Alu	-22025	NM_001099404	6331	Hs.517898	NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	"sodium channel, voltage-gated, type V, alpha subunit"	protein-coding
chr1.97029361.-	chr1	97029361	97029362	-	0	NA	Intergenic	AluSp|SINE|Alu	157814	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr11.2051342.-	chr11	2051342	2051343	-	0	NA	Intergenic	Intergenic	32277	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr5.141558682.+	chr5	141558682	141558683	+	0	NA	Intergenic	AluSg|SINE|Alu	70358	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr4.55034964.+	chr4	55034964	55034965	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60300	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr5.17207864.+	chr5	17207864	17207865	+	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	-9068	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr16.88873556.+	chr16	88873556	88873557	+	0	NA	"exon (NM_030928, exon 8 of 10)"	"exon (NM_030928, exon 8 of 10)"	3370	NM_030928	81620	Hs.122908	NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
chr2.178267571.-	chr2	178267571	178267572	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10100	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr2.64811860.-	chr2	64811860	64811861	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22586	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr9.128777186.+	chr9	128777186	128777187	+	0	NA	Intergenic	Intergenic	266708	NM_001134778	5090	Hs.428027	NM_001134778	ENSG00000167081	PBX3	-	pre-B-cell leukemia homeobox 3	protein-coding
chr6.2221772.+	chr6	2221772	2221773	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24096	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr6.64268031.+	chr6	64268031	64268032	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13889	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr6.18256503.+	chr6	18256503	18256504	+	0	NA	"intron (NM_001134709, intron 4 of 9)"	AluSp|SINE|Alu	8296	NM_003472	7913	Hs.484813	NM_001134709	ENSG00000124795	DEK	D6S231E	DEK oncogene	protein-coding
chr17.79427762.-	chr17	79427762	79427763	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9548	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr12.118079842.-	chr12	118079842	118079843	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280235	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr16.4835228.-	chr16	4835228	4835229	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3170	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr14.31429815.+	chr14	31429815	31429816	+	0	NA	"intron (NM_001083893, intron 1 of 17)"	AluY|SINE|Alu	54133	NR_030354	693209		NR_030354		MIR624	MIRN624|hsa-mir-624	microRNA 624	miscRNA
chr14.101693727.-	chr14	101693727	101693728	-	0	NA	Intergenic	Intergenic	-157479	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr17.43255865.+	chr17	43255865	43255866	+	0	NA	Intergenic	AluY|SINE|Alu	17601	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr9.87007983.-	chr9	87007983	87007984	-	0	NA	Intergenic	AluSg|SINE|Alu	24570	NM_022127	64078	Hs.535966	NM_001199633	ENSG00000197506	SLC28A3	CNT3	"solute carrier family 28 (sodium-coupled nucleoside transporter), member 3"	protein-coding
chr2.183903193.-	chr2	183903193	183903194	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-36	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr22.50876273.+	chr22	50876273	50876274	+	0	NA	"exon (NM_001242899, exon 16 of 23)"	"exon (NM_001242899, exon 16 of 23)"	37191	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chrX.88129119.-	chrX	88129119	88129120	-	0	NA	Intergenic	AluY|SINE|Alu	-126893	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr18.73167690.-	chr18	73167690	73167691	-	0	NA	Intergenic	CpG	28101	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr3.196325423.+	chr3	196325423	196325424	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29698	NM_001105573	200933	Hs.169815	NM_001105573	ENSG00000174013	FBXO45	Fbx45	F-box protein 45	protein-coding
chr19.22949511.-	chr19	22949511	22949512	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	-17462	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr8.1312673.-	chr8	1312673	1312674	-	0	NA	Intergenic	Intergenic	61846	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr7.95178738.-	chr7	95178738	95178739	-	0	NA	Intergenic	AluY|SINE|Alu	-47187	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr8.26532425.-	chr8	26532425	26532426	-	0	NA	Intergenic	AluSp|SINE|Alu	-96504	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr2.2669438.-	chr2	2669438	2669439	-	0	NA	Intergenic	Intergenic	334393	NM_015025	23040	Hs.669852	NM_015025	ENSG00000186487	MYT1L	NZF1|ZC2HC4B	myelin transcription factor 1-like	protein-coding
chr16.1824177.+	chr16	1824177	1824178	+	0	NA	"intron (NM_001257370, intron 2 of 7)"	"intron (NM_001257370, intron 2 of 7)"	948	NM_001257370	197342	Hs.7247	NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic endonuclease 1 homolog 2 (S. pombe)	protein-coding
chr13.51885836.-	chr13	51885836	51885837	-	0	NA	Intergenic	AluSx|SINE|Alu	29332	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr8.28669068.-	chr8	28669068	28669069	-	0	NA	"intron (NR_026826, intron 6 of 14)"	AluJb|SINE|Alu	-78364	NM_001172562	55756	Hs.162397	NM_001145159	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
chr11.31555117.-	chr11	31555117	31555118	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluYk4|SINE|Alu	-23820	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr6.89378024.-	chr6	89378024	89378025	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295324	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr17.61686673.-	chr17	61686673	61686674	-	0	NA	TTS (NM_016360)	TTS (NM_016360)	-8442	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
chr7.22396713.+	chr7	22396713	22396714	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-180	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr6.28304040.+	chr6	28304040	28304041	+	0	NA	promoter-TSS (NM_001135216)	promoter-TSS (NM_001135216)	112	NM_001243244	64288	Hs.656413	NM_001135215	ENSG00000235109	ZSCAN31	ZNF20-Lp|ZNF310P|ZNF323|dJ874C20.2	zinc finger and SCAN domain containing 31	protein-coding
chr9.137721488.+	chr9	137721488	137721489	+	0	NA	"intron (NM_000093, intron 63 of 65)"	"intron (NM_000093, intron 63 of 65)"	19727	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chrX.53125755.+	chrX	53125755	53125756	+	0	NA	Intergenic	AluJb|SINE|Alu	14213	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.53979682.+	chr19	53979682	53979683	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8693	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr3.25825164.+	chr3	25825164	25825165	+	0	NA	promoter-TSS (NM_001145295)	promoter-TSS (NM_001145295)	-175	NM_001145293	55768	Hs.743367	NM_001145293	ENSG00000151092	NGLY1	PNG1|PNGase	N-glycanase 1	protein-coding
chr16.58288631.+	chr16	58288631	58288632	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4791	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr12.127898783.-	chr12	127898783	127898784	-	0	NA	Intergenic	Intergenic	467379	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr9.134084002.-	chr9	134084002	134084003	-	0	NA	"intron (NM_005085, intron 30 of 35)"	AluY|SINE|Alu	-67904	NM_033387	286336	Hs.704076	NM_033387	ENSG00000126882	FAM78A	C9orf59	"family with sequence similarity 78, member A"	protein-coding
chr17.45349418.+	chr17	45349418	45349419	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluSq|SINE|Alu	18210	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr17.27717871.+	chr17	27717871	27717872	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-72	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr14.51521296.+	chr14	51521296	51521297	+	0	NA	"intron (NM_052978, intron 1 of 6)"	"intron (NM_052978, intron 1 of 6)"	41126	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr18.33709921.+	chr18	33709921	33709922	+	0	NA	promoter-TSS (NM_001242877)	promoter-TSS (NM_001242877)	84	NR_040110	55250	Hs.8739	NM_001242875	ENSG00000134759	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
chr12.49856917.-	chr12	49856917	49856918	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73960	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr14.90540095.+	chr14	90540095	90540096	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSx|SINE|Alu	11987	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr6.141000395.+	chr6	141000395	141000396	+	0	NA	Intergenic	AluY|SINE|Alu	-4556	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr7.12736917.+	chr7	12736917	12736918	+	0	NA	Intergenic	AluSg|SINE|Alu	10006	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr8.60674643.+	chr8	60674643	60674644	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519311	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chrX.53808339.-	chrX	53808339	53808340	-	0	NA	Intergenic	AluYb8|SINE|Alu	94642	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr9.89763552.-	chr9	89763552	89763553	-	0	NA	promoter-TSS (NM_001001709)	promoter-TSS (NM_001001709)	7	NM_001001709	401535	Hs.657740	NM_001001709	ENSG00000204446	C9orf170	-	chromosome 9 open reading frame 170	protein-coding
chr14.23706400.-	chr14	23706400	23706401	-	0	NA	Intergenic	AluSz|SINE|Alu	-48909	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr17.79089769.-	chr17	79089769	79089770	-	0	NA	"3' UTR (NM_001144888, exon 14 of 14)"	"3' UTR (NM_001144888, exon 14 of 14)"	-9404	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr2.34374937.+	chr2	34374937	34374938	+	0	NA	Intergenic	AluY|SINE|Alu	-421653	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr2.71562033.+	chr2	71562033	71562034	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3148	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr19.39915298.-	chr19	39915298	39915299	-	0	NA	"exon (NM_022835, exon 19 of 19)"	"exon (NM_022835, exon 19 of 19)"	-11320	NM_001020	6217	Hs.397609	NM_001020	ENSG00000105193	RPS16	S16	ribosomal protein S16	protein-coding
chr9.131389932.-	chr9	131389932	131389933	-	0	NA	"intron (NM_001195532, intron 48 of 54)"	"intron (NM_001195532, intron 48 of 54)"	-29197	NM_052844	89891	Hs.495240	NM_052844	ENSG00000119333	WDR34	DIC5|bA216B9.3	WD repeat domain 34	protein-coding
chr20.61867558.+	chr20	61867558	61867559	+	0	NA	"exon (NM_139317, exon 1 of 7)"	"exon (NM_139317, exon 1 of 7)"	282	NM_139317	79444	Hs.256126	NM_022161	ENSG00000101197	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
chr1.240947769.+	chr1	240947769	240947770	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172307	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr13.21872278.+	chr13	21872278	21872279	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	14	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr2.183903208.-	chr2	183903208	183903209	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-21	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr12.112161144.-	chr12	112161144	112161145	-	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	-37287	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr2.224599673.-	chr2	224599673	224599674	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102646	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr3.126207251.-	chr3	126207251	126207252	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12489	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr17.4697367.-	chr17	4697367	4697368	-	0	NA	Intergenic	AluY|SINE|Alu	2072	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr7.1710280.-	chr7	1710280	1710281	-	0	NA	Intergenic	CpG	38518	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr8.14882328.-	chr8	14882328	14882329	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171309	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr5.22207064.+	chr5	22207064	22207065	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64603	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr2.121425242.-	chr2	121425242	121425243	-	0	NA	Intergenic	AluY|SINE|Alu	129625	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr3.127223564.-	chr3	127223564	127223565	-	0	NA	Intergenic	AluY|SINE|Alu	-86038	NM_001136053	131601	Hs.6418	NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	"transmembrane protein, adipocyte asscociated 1"	protein-coding
chr11.2013417.+	chr11	2013417	2013418	+	0	NA	Intergenic	CpG	-2267	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	miscRNA
chrX.69569433.-	chrX	69569433	69569434	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59554	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr4.57633196.-	chr4	57633196	57633197	-	0	NA	Intergenic	AluSc8|SINE|Alu	-54443	NR_073417	6691	Hs.98243	NM_001271718	ENSG00000128040	SPINK2	HUSI-II	"serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)"	protein-coding
chr15.93223282.+	chr15	93223282	93223283	+	0	NA	Intergenic	AluY|SINE|Alu	-24251	NM_207446	400451	Hs.702316	NM_207446	ENSG00000185442	FAM174B	-	"family with sequence similarity 174, member B"	protein-coding
chrX.42939951.+	chrX	42939951	42939952	+	0	NA	Intergenic	AluSx|SINE|Alu	-302465	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr2.71561999.+	chr2	71561999	71562000	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3114	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr12.132116746.+	chr12	132116746	132116747	+	0	NA	Intergenic	L1ME1|LINE|L1	-78886	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr11.73486266.-	chr11	73486266	73486267	-	0	NA	Intergenic	SVA_C|Other|Other	12651	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr16.67682110.+	chr16	67682110	67682111	+	0	NA	"exon (NM_001013838, exon 14 of 38)"	"exon (NM_001013838, exon 14 of 38)"	3080	NM_001013838	146206	Hs.611432	NM_001013838	ENSG00000159753	RLTPR	CARMIL2|CARMIL2b|LRRC16C	"RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing"	protein-coding
chr9.72433074.+	chr9	72433074	72433075	+	0	NA	Intergenic	AluY|SINE|Alu	2581	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr17.78559354.-	chr17	78559354	78559355	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40729	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr5.55029219.-	chr5	55029219	55029220	-	0	NA	Intergenic	AluY|SINE|Alu	4626	NM_001166533	54514	Hs.223581	NM_019039	ENSG00000152670	DDX4	VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding
chr2.242479888.-	chr2	242479888	242479889	-	0	NA	Intergenic	Intergenic	18258	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr12.105375627.-	chr12	105375627	105375628	-	0	NA	Intergenic	AluSx3|SINE|Alu	4471	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr2.120282020.+	chr2	120282020	120282021	+	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	8	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr1.7496575.+	chr1	7496575	7496576	+	0	NA	"intron (NM_015215, intron 5 of 22)"	"intron (NM_015215, intron 5 of 22)"	-334754	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr19.23432247.+	chr19	23432247	23432248	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	925	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr22.38498808.+	chr22	38498808	38498809	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7868	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr12.94542008.-	chr12	94542008	94542009	-	0	NA	promoter-TSS (NM_005761)	promoter-TSS (NM_005761)	491	NM_005761	10154	Hs.584845	NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
chr13.82029618.-	chr13	82029618	82029619	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114532	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr3.129081669.-	chr3	129081669	129081670	-	0	NA	Intergenic	SVA_D|Other|Other	-34522	NR_002992	677797	Hs.711399	NR_002992	ENSG00000207088	SNORA7B	ACA7B	"small nucleolar RNA, H/ACA box 7B"	snoRNA
chr8.43413768.+	chr8	43413768	43413769	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	266183	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr3.20908692.+	chr3	20908692	20908693	+	0	NA	Intergenic	SVA_D|Other|Other	-538526	NR_002311	391518	Hs.543226	NR_002311	ENSG00000236380	VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo
chr10.74059488.+	chr10	74059488	74059489	+	0	NA	Intergenic	AluSz6|SINE|Alu	25811	NM_019058	54541	Hs.523012	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
chr3.15431320.-	chr3	15431320	15431321	-	0	NA	Intergenic	AluSp|SINE|Alu	-37722	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr1.1452385.-	chr1	1452385	1452386	-	0	NA	"intron (NM_001170535, intron 2 of 15)"	AluSx1|SINE|Alu	-4475	NM_001170536	55210	Hs.23413	NM_001170535	ENSG00000197785	ATAD3A	-	"ATPase family, AAA domain containing 3A"	protein-coding
chr1.150745381.+	chr1	150745381	150745382	+	0	NA	Intergenic	AluY|SINE|Alu	-6948	NM_001199739	1520	Hs.181301	NM_001199739	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
chr3.81127057.+	chr3	81127057	81127058	+	0	NA	Intergenic	AluY|SINE|Alu	683893	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr6.1604609.-	chr6	1604609	1604610	-	0	NA	Intergenic	CpG	6072	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr6.105851062.+	chr6	105851062	105851063	+	0	NA	promoter-TSS (NM_002726)	promoter-TSS (NM_002726)	-63	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
chr17.6371754.+	chr17	6371754	6371755	+	0	NA	"intron (NM_001165966, intron 12 of 18)"	"intron (NM_001165966, intron 12 of 18)"	24019	NM_019013	54478	Hs.592116	NM_001195228	ENSG00000129195	FAM64A	CATS|RCS1	"family with sequence similarity 64, member A"	protein-coding
chr5.2007697.+	chr5	2007697	2007698	+	0	NA	Intergenic	CpG	-124817	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr5.176829669.-	chr5	176829669	176829670	-	0	NA	"exon (NM_000505, exon 13 of 14)"	"exon (NM_000505, exon 13 of 14)"	2032	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
chr3.142840273.-	chr3	142840273	142840274	-	0	NA	"exon (NM_004267, exon 2 of 2)"	"exon (NM_004267, exon 2 of 2)"	-1655	NM_004267	9435	Hs.744216	NM_004267		CHST2	C6ST|GST-2|GST2|Gn6ST-1|glcNAc6ST-1	carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2	protein-coding
chr7.12736881.+	chr7	12736881	12736882	+	0	NA	Intergenic	AluSg|SINE|Alu	9970	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr9.139071850.+	chr9	139071850	139071851	+	0	NA	Intergenic	Intergenic	23154	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr7.5322936.+	chr7	5322936	5322937	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	375	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr22.38008295.+	chr22	38008295	38008296	+	0	NA	"intron (NM_001172688, intron 1 of 17)"	AluY|SINE|Alu	3248	NM_001172688	26088	Hs.499158	NM_001001560	ENSG00000100083	GGA1	-	"golgi-associated, gamma adaptin ear containing, ARF binding protein 1"	protein-coding
chr18.11086424.+	chr18	11086424	11086425	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62337	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr21.47838712.-	chr21	47838712	47838713	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40150	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr12.129892186.+	chr12	129892186	129892187	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496026	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr14.23706398.-	chr14	23706398	23706399	-	0	NA	Intergenic	AluSz|SINE|Alu	-48911	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr17.4810675.-	chr17	4810675	4810676	-	0	NA	Intergenic	AluY|SINE|Alu	4306	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	"cholinergic receptor, nicotinic, epsilon (muscle)"	protein-coding
chr9.91117681.+	chr9	91117681	91117682	+	0	NA	Intergenic	L2b|LINE|L2	-32335	NM_145283	158046	Hs.734507	NM_001161625	ENSG00000130045	NXNL2	C9orf121|RDCVF2	nucleoredoxin-like 2	protein-coding
chr6.33806198.+	chr6	33806198	33806199	+	0	NA	Intergenic	Intergenic	-34405	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chrM.15613.-	chrM	15613	15614	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.121174793.-	chr12	121174793	121174794	-	0	NA	"exon (NM_000017, exon 3 of 10)"	"exon (NM_000017, exon 3 of 10)"	-11222	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr1.109995572.-	chr1	109995572	109995573	-	0	NA	Intergenic	AluY|SINE|Alu	13528	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr7.154698557.-	chr7	154698557	154698558	-	0	NA	Intergenic	LTR12E|LTR|ERV1	21670	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	LOC100132707	-	uncharacterized LOC100132707	miscRNA
chr11.22981434.-	chr11	22981434	22981435	-	0	NA	Intergenic	AluYg6|SINE|Alu	99462	NM_001195637	100500938	Hs.555029	NM_001195637	ENSG00000255359	CCDC179	-	coiled-coil domain containing 179	protein-coding
chr5.178901722.+	chr5	178901722	178901723	+	0	NA	Intergenic	AluY|SINE|Alu	-75840	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chr7.5570041.+	chr7	5570041	5570042	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	191	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr20.48703468.-	chr20	48703468	48703469	-	0	NA	"intron (NM_022442, intron 2 of 3)"	AluY|SINE|Alu	-26267	NM_001257399	7335	Hs.420529	NM_001032288	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
chr9.137588938.-	chr9	137588938	137588939	-	0	NA	"intron (NM_000093, intron 2 of 65)"	"intron (NM_000093, intron 2 of 65)"	-55286	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr11.74394520.+	chr11	74394520	74394521	+	0	NA	Intergenic	CpG	36862	NR_039845	100616402		NR_039845		MIR4696	-	microRNA 4696	miscRNA
chr9.121440471.-	chr9	121440471	121440472	-	0	NA	Intergenic	SVA_B|Other|Other	-691268	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr13.112726516.+	chr13	112726516	112726517	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4603	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr4.1541950.-	chr4	1541950	1541951	-	0	NA	Intergenic	Intergenic	-143768	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr11.67351072.-	chr11	67351072	67351073	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-6	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr6.1035046.+	chr6	1035046	1035047	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66521	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chr8.28449399.-	chr8	28449399	28449400	-	0	NA	Intergenic	AluSg4|SINE|Alu	86700	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	miscRNA
chr11.2213972.-	chr11	2213972	2213973	-	0	NA	Intergenic	Intergenic	-19679	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr15.66993507.-	chr15	66993507	66993508	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	1167	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr5.86116405.+	chr5	86116405	86116406	+	0	NA	Intergenic	AluSp|SINE|Alu	200091	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr8.101767152.+	chr8	101767152	101767153	+	0	NA	Intergenic	AluSx3|SINE|Alu	-32837	NM_002568	26986	Hs.387804	NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	"poly(A) binding protein, cytoplasmic 1"	protein-coding
chr11.64781956.-	chr11	64781956	64781957	-	0	NA	"intron (NR_037650, intron 1 of 10)"	CpG	-371	NR_037650	100528018	Hs.80132	NR_037650		ARL2-SNX15	-	ARL2-SNX15 readthrough	miscRNA
chr14.106359740.-	chr14	106359740	106359741	-	0	NA	Intergenic	Intergenic	24098	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr6.123144118.+	chr6	123144118	123144119	+	0	NA	Intergenic	AluY|SINE|Alu	34147	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr11.114277516.-	chr11	114277516	114277517	-	0	NA	"intron (NM_016090, intron 4 of 4)"	AluSg|SINE|Alu	-6132	NM_016090	10179	Hs.7527	NM_016090	ENSG00000076053	RBM7	-	RNA binding motif protein 7	protein-coding
chr22.49832967.+	chr22	49832967	49832968	+	0	NA	Intergenic	AluSx|SINE|Alu	218223	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr19.11104359.-	chr19	11104359	11104360	-	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	-9531	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr8.41166052.-	chr8	41166052	41166053	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-938	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr20.52741110.+	chr20	52741110	52741111	+	0	NA	Intergenic	AluSx1|SINE|Alu	49406	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr11.119749464.+	chr11	119749464	119749465	+	0	NA	Intergenic	AluSp|SINE|Alu	-150029	NM_203285	5818	Hs.334846	NM_002855	ENSG00000110400	PVRL1	CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
chr8.144512822.-	chr8	144512822	144512823	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	220	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr1.10727878.-	chr1	10727878	10727879	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128855	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr19.267142.-	chr19	267142	267143	-	0	NA	Intergenic	CpG	-24027	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr2.81982194.+	chr2	81982194	81982195	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101733	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr9.107727062.-	chr9	107727062	107727063	-	0	NA	Intergenic	AluYa5|SINE|Alu	36535	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr19.658495.-	chr19	658495	658496	-	0	NA	"intron (NM_194460, intron 1 of 8)"	"intron (NM_194460, intron 1 of 8)"	-4738	NM_194460	55658	Hs.69554	NM_194460	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
chr19.15718078.-	chr19	15718078	15718079	-	0	NA	Intergenic	AluY|SINE|Alu	7951	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr19.18180411.+	chr19	18180411	18180412	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17286	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chrX.86720998.+	chrX	86720998	86720999	+	0	NA	Intergenic	SVA_C|Other|Other	-51717	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr3.8635261.+	chr3	8635261	8635262	+	0	NA	Intergenic	Intergenic	21793	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr2.27007095.-	chr2	27007095	27007096	-	0	NA	Intergenic	AluJb|SINE|Alu	1787	NM_001809	1058	Hs.1594	NM_001042426	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
chr20.52741105.+	chr20	52741105	52741106	+	0	NA	Intergenic	AluSx1|SINE|Alu	49411	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr20.33005264.+	chr20	33005264	33005265	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48866	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr7.5629212.+	chr7	5629212	5629213	+	0	NA	Intergenic	AluJo|SINE|Alu	-3224	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr19.38836198.-	chr19	38836198	38836199	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9755	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr1.937255.+	chr1	937255	937256	+	0	NA	Intergenic	CpG-24	-1703	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr22.39437253.-	chr22	39437253	39437254	-	0	NA	"intron (NM_145298, intron 1 of 6)"	"intron (NM_145298, intron 1 of 6)"	-580	NM_001006666	200316	Hs.659809	NM_001006666		APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F"	protein-coding
chr3.133380497.+	chr3	133380497	133380498	+	0	NA	"intron (NM_007027, intron 1 of 27)"	CpG	240	NM_007027	11073	Hs.593379	NM_007027	ENSG00000163781	TOPBP1	TOP2BP1	topoisomerase (DNA) II binding protein 1	protein-coding
chr11.7603346.-	chr11	7603346	7603347	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15071	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr1.236252185.+	chr1	236252185	236252186	+	0	NA	Intergenic	AluY|SINE|Alu	-23704	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr12.130340698.+	chr12	130340698	130340699	+	0	NA	"intron (NM_133448, intron 1 of 8)"	CpG	47514	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr3.73614825.+	chr3	73614825	73614826	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59247	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr2.54429522.+	chr2	54429522	54429523	+	0	NA	"intron (NM_138448, intron 3 of 3)"	AluSx|SINE|Alu	53887	NM_001003937	388951	Hs.620508	NM_001003937	ENSG00000178021	TSPYL6	-	TSPY-like 6	protein-coding
chr19.45682595.+	chr19	45682595	45682596	+	0	NA	"exon (NM_212550, exon 2 of 2)"	"exon (NM_212550, exon 2 of 2)"	592	NM_212550	388552	Hs.103902	NM_212550	ENSG00000189114	BLOC1S3	BLOS3|HPS8|RP	"biogenesis of lysosomal organelles complex-1, subunit 3"	protein-coding
chr19.866140.+	chr19	866140	866141	+	0	NA	Intergenic	Intergenic	6475	NM_001928	1675	Hs.155597	NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D (adipsin)	protein-coding
chr11.18743355.-	chr11	18743355	18743356	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4422	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr5.179806532.-	chr5	179806532	179806533	-	0	NA	Intergenic	L2a|LINE|L2	26217	NM_005110	9945	Hs.696497	NM_005110	ENSG00000131459	GFPT2	GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
chr11.72160431.-	chr11	72160431	72160432	-	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	14707	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr9.131293142.+	chr9	131293142	131293143	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21695	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr1.2260078.-	chr1	2260078	2260079	-	0	NA	"intron (NM_024848, intron 12 of 13)"	"intron (NM_024848, intron 12 of 13)"	-24022	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr20.60392342.+	chr20	60392342	60392343	+	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	136376	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr15.63892649.-	chr15	63892649	63892650	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-377	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr5.171395325.+	chr5	171395325	171395326	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38552	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr14.23706404.+	chr14	23706404	23706405	+	0	NA	Intergenic	AluSz|SINE|Alu	48905	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr16.1807960.+	chr16	1807960	1807961	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13750	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr17.34257207.-	chr17	34257207	34257208	-	0	NA	promoter-TSS (NM_001163124)	promoter-TSS (NM_001163124)	-96	NR_028000	201299	Hs.194411	NM_001034836	ENSG00000187456	RDM1	RAD52B	RAD52 motif 1	protein-coding
chr8.130306074.+	chr8	130306074	130306075	+	0	NA	Intergenic	AluY|SINE|Alu	-52588	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LOC728724	-	hCG1814486	miscRNA
chr9.138663343.+	chr9	138663343	138663344	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69312	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr7.95234891.+	chr7	95234891	95234892	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8966	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr7.45776029.-	chr7	45776029	45776030	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32588	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr3.32863291.+	chr3	32863291	32863292	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3781	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr4.2538745.-	chr4	2538745	2538746	-	0	NA	Intergenic	CpG	-67565	NM_001185009	6047	Hs.740360	NM_001185009	ENSG00000063978	RNF4	SLX5|SNURF	ring finger protein 4	protein-coding
chr9.16855798.+	chr9	16855798	16855799	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	14988	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chrX.54371345.-	chrX	54371345	54371346	-	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	-13093	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr22.17043789.-	chr22	17043789	17043790	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-29911	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	"chaperonin containing TCP1, subunit 8 (theta)-like 2"	protein-coding
chr7.26216461.+	chr7	26216461	26216462	+	0	NA	"intron (NM_004289, intron 1 of 3)"	SVA_A|Other|Other	23952	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
chr5.1246054.+	chr5	1246054	1246055	+	0	NA	"exon (NM_182632, exon 12 of 12)"	"exon (NM_182632, exon 12 of 12)"	20584	NM_182632	348932	Hs.213284	NM_182632	ENSG00000164363	SLC6A18	Xtrp2	"solute carrier family 6, member 18"	protein-coding
chr7.139762594.-	chr7	139762594	139762595	-	0	NA	"exon (NM_022750, exon 1 of 12)"	"exon (NM_022750, exon 1 of 12)"	-927	NM_022750	64761	Hs.12646	NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	"poly (ADP-ribose) polymerase family, member 12"	protein-coding
chr20.47588409.-	chr20	47588409	47588410	-	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	-50134	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr20.58244240.+	chr20	58244240	58244241	+	0	NA	"intron (NM_080672, intron 1 of 12)"	MIRb|SINE|MIR	-7476	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr2.240383718.-	chr2	240383718	240383719	-	0	NA	Intergenic	Intergenic	61075	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.139262279.-	chr9	139262279	139262280	-	0	NA	"exon (NM_052814, exon 8 of 13)"	"exon (NM_052814, exon 8 of 13)"	4016	NR_073565	728489	Hs.528581	NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
chr20.29612129.-	chr20	29612129	29612130	-	0	NA	"intron (NR_003579, intron 1 of 7)"	CpG	-250	NR_003579	284802	Hs.653099	NR_003579	ENSG00000149531	FRG1B	C20orf80|bA348I14.2	"FSHD region gene 1 family, member B"	pseudo
chr7.156795114.-	chr7	156795114	156795115	-	0	NA	Intergenic	Intergenic	-7015	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chrX.109043296.-	chrX	109043296	109043297	-	0	NA	Intergenic	AluY|SINE|Alu	66675	NM_004458	2182	Hs.268785	NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
chr1.235537122.-	chr1	235537122	235537123	-	0	NA	"intron (NM_001079515, intron 1 of 16)"	AluY|SINE|Alu	-6394	NM_001079515	6905	Hs.498143	NM_001079515	ENSG00000116957	TBCE	HRD|KCS|KCS1|pac2	tubulin folding cofactor E	protein-coding
chr12.112161139.+	chr12	112161139	112161140	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37282	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr9.137588841.+	chr9	137588841	137588842	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55189	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr17.74169104.+	chr17	74169104	74169105	+	0	NA	"intron (NM_052916, intron 3 of 18)"	AluY|SINE|Alu	-31724	NM_001454	2302	Hs.651204	NM_001454	ENSG00000129654	FOXJ1	FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
chr2.198058519.-	chr2	198058519	198058520	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117002	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr4.113704352.+	chr4	113704352	113704353	+	0	NA	Intergenic	AluSg|SINE|Alu	-34887	NM_001127493	287	Hs.620557	NM_001127493	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	"ankyrin 2, neuronal"	protein-coding
chr6.150071146.+	chr6	150071146	150071147	+	0	NA	"intron (NM_001252051, intron 1 of 6)"	CpG	315	NM_001252050	5110	Hs.279257	NM_001252049	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
chr7.154796059.-	chr7	154796059	154796060	-	0	NA	"non-coding (NR_028090, exon 1 of 1)"	"non-coding (NR_028090, exon 1 of 1)"	-916	NR_028090	202781	Hs.193172	NR_028090		LOC202781	-	uncharacterized LOC202781	miscRNA
chr16.88074388.+	chr16	88074388	88074389	+	0	NA	"intron (NM_001173541, intron 10 of 11)"	"intron (NM_001173541, intron 10 of 11)"	70764	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr12.120874321.+	chr12	120874321	120874322	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1572	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr2.21484714.-	chr2	21484714	21484715	-	0	NA	Intergenic	Intergenic	217769	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr9.126145345.+	chr9	126145345	126145346	+	0	NA	"intron (NM_020946, intron 21 of 21)"	MIRc|SINE|MIR	19537	NR_030332	693186		NR_030332		MIR601	MIRN601|hsa-mir-601	microRNA 601	miscRNA
chr22.50876235.+	chr22	50876235	50876236	+	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	37229	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr1.9517619.+	chr1	9517619	9517620	+	0	NA	Intergenic	AluJb|SINE|Alu	-81909	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr8.86544465.-	chr8	86544465	86544466	-	0	NA	Intergenic	AluSp|SINE|Alu	-23440	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chrX.53930553.+	chrX	53930553	53930554	+	0	NA	Intergenic	AluSq2|SINE|Alu	139074	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr12.34501250.+	chr12	34501250	34501251	+	0	NA	Intergenic	GSATII|Satellite|centr	326034	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr14.64299493.+	chr14	64299493	64299494	+	0	NA	Intergenic	AluJb|SINE|Alu	-20190	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chrX.122993614.-	chrX	122993614	122993615	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	48	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr3.1144604.-	chr3	1144604	1144605	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9975	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr19.58427967.-	chr19	58427967	58427968	-	0	NA	promoter-TSS (NM_152475)	promoter-TSS (NM_152475)	-11	NM_152475	147687	Hs.567710	NM_152475		ZNF417	-	zinc finger protein 417	protein-coding
chr2.32250713.+	chr2	32250713	32250714	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14131	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr6.89378028.+	chr6	89378028	89378029	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295320	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr19.1399296.+	chr19	1399296	1399297	+	0	NA	"intron (NM_000156, intron 3 of 5)"	CpG	2273	NM_000156	2593	Hs.81131	NM_000156	ENSG00000130005	GAMT	PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
chr17.35266226.+	chr17	35266226	35266227	+	0	NA	Intergenic	AluSx3|SINE|Alu	-28546	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr7.73624272.+	chr7	73624272	73624273	+	0	NA	"5' UTR (NM_014146, exon 1 of 13)"	"5' UTR (NM_014146, exon 1 of 13)"	185	NM_032464	7462	Hs.741249	NM_014146	ENSG00000086730	LAT2	LAB|NTAL|WBSCR15|WBSCR5|WSCR5	"linker for activation of T cells family, member 2"	protein-coding
chr20.62587613.+	chr20	62587613	62587614	+	0	NA	TTS (NM_020713)	TTS (NM_020713)	187	NM_017859	54963	Hs.504998	NM_001193379	ENSG00000198276	UCKL1	UCK1-LIKE|UCK1L|URKL1	uridine-cytidine kinase 1-like 1	protein-coding
chr17.8061022.-	chr17	8061022	8061023	-	0	NA	Intergenic	AluY|SINE|Alu	5269	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr12.112407465.+	chr12	112407465	112407466	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43558	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr6.34857494.-	chr6	34857494	34857495	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-456	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr4.185174245.-	chr4	185174245	185174246	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35131	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr9.138437772.-	chr9	138437772	138437773	-	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	213	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr6.35497074.+	chr6	35497074	35497075	+	0	NA	Intergenic	AluSp|SINE|Alu	-16427	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
chr3.155539413.+	chr3	155539413	155539414	+	0	NA	Intergenic	AluSp|SINE|Alu	-15358	NM_173657	285315	Hs.350846	NM_173657	ENSG00000174928	C3orf33	AC3-33	chromosome 3 open reading frame 33	protein-coding
chr6.123144101.-	chr6	123144101	123144102	-	0	NA	Intergenic	AluY|SINE|Alu	-34130	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr6.168378628.+	chr6	168378628	168378629	+	0	NA	Intergenic	L2a|LINE|L2	-1009	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr15.72816632.-	chr15	72816632	72816633	-	0	NA	"intron (NM_005744, intron 2 of 13)"	AluSz|SINE|Alu	-49965	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	"ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)"	protein-coding
chr18.46969471.+	chr18	46969471	46969472	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17608	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr17.29814852.-	chr17	29814852	29814853	-	0	NA	"intron (NM_032932, intron 3 of 14)"	CpG	47049	NR_039877	100616248		NR_039877	ENSG00000266459	MIR4724	-	microRNA 4724	miscRNA
chrX.12171172.+	chrX	12171172	12171173	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14587	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chr4.1358098.+	chr4	1358098	1358099	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16994	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr22.18131977.+	chr22	18131977	18131978	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6451	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr17.74115539.+	chr17	74115539	74115540	+	0	NA	Intergenic	Intergenic	-15671	NM_015219	23265	Hs.514496	NM_001013839	ENSG00000182473	EXOC7	2-5-3p|EX070|EXO70|EXOC1|Exo70p|YJL085W	exocyst complex component 7	protein-coding
chr7.111846973.-	chr7	111846973	111846974	-	0	NA	promoter-TSS (NM_014705)	promoter-TSS (NM_014705)	-330	NM_021994	11179	Hs.655904	NM_021994		ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
chr3.139481333.-	chr3	139481333	139481334	-	0	NA	Intergenic	Intergenic	84448	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr9.127626626.-	chr9	127626626	127626627	-	0	NA	Intergenic	AluSx|SINE|Alu	2386	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr5.87348575.-	chr5	87348575	87348576	-	0	NA	Intergenic	L1PA2|LINE|L1	-216090	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr2.239047345.+	chr2	239047345	239047346	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-18	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr1.2483297.+	chr1	2483297	2483298	+	0	NA	"non-coding (NR_026927, exon 1 of 2)"	"non-coding (NR_026927, exon 1 of 2)"	987	NR_026927	115110	Hs.132272	NR_026927		LOC115110	-	uncharacterized LOC115110	miscRNA
chr15.50998361.-	chr15	50998361	50998362	-	0	NA	Intergenic	AluYa8|SINE|Alu	19349	NM_017672	54822	Hs.512894	NM_017672		TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK	"transient receptor potential cation channel, subfamily M, member 7"	protein-coding
chr18.14856557.+	chr18	14856557	14856558	+	0	NA	Intergenic	SVA_F|Other|Other	26392	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	miscRNA
chr2.32250690.-	chr2	32250690	32250691	-	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	-14154	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr15.91599299.-	chr15	91599299	91599300	-	0	NA	Intergenic	Intergenic	33466	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr15.41687858.-	chr15	41687858	41687859	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6800	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr2.213546703.+	chr2	213546703	213546704	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143351	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr13.114899241.+	chr13	114899241	114899242	+	0	NA	Intergenic	Intergenic	-1146	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr12.116724216.+	chr12	116724216	116724217	+	0	NA	Intergenic	AluY|SINE|Alu	-9225	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr2.236403079.-	chr2	236403079	236403080	-	0	NA	"5' UTR (NM_001244888, exon 1 of 10)"	"5' UTR (NM_001244888, exon 1 of 10)"	-346	NM_001244888	116987	Hs.435039	NM_001037131	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1"	protein-coding
chr7.128828510.-	chr7	128828510	128828511	-	0	NA	promoter-TSS (NM_005631)	promoter-TSS (NM_005631)	203	NM_005631	6608	Hs.437846	NM_005631	ENSG00000128602	SMO	FZD11|Gx|SMOH	"smoothened, frizzled family receptor"	protein-coding
chr3.48533705.-	chr3	48533705	48533706	-	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	-7778	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr3.186441529.-	chr3	186441529	186441530	-	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	-6431	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr1.43625570.-	chr1	43625570	43625571	-	0	NA	Intergenic	AluY|SINE|Alu	-11976	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chr3.81337967.+	chr3	81337967	81337968	+	0	NA	Intergenic	AluY|SINE|Alu	472983	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr1.119721805.-	chr1	119721805	119721806	-	0	NA	Intergenic	LTR12C|LTR|ERV1	38510	NM_015836	10352	Hs.523506	NM_015836	ENSG00000116874	WARS2	TrpRS	"tryptophanyl tRNA synthetase 2, mitochondrial"	protein-coding
chr15.90328017.-	chr15	90328017	90328018	-	0	NA	TTS (NM_001150)	TTS (NM_001150)	-8428	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chrX.81762762.+	chrX	81762762	81762763	+	0	NA	Intergenic	AluY|SINE|Alu	-1000507	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr19.14551302.+	chr19	14551302	14551303	+	0	NA	"intron (NM_213560, intron 1 of 21)"	"intron (NM_213560, intron 1 of 21)"	216	NM_213560	5585	Hs.466044	NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
chr12.133366783.-	chr12	133366783	133366784	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28332	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr19.58125592.+	chr19	58125592	58125593	+	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	-238	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr17.16010331.-	chr17	16010331	16010332	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87622	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr1.119793433.-	chr1	119793433	119793434	-	0	NA	Intergenic	AluYc|SINE|Alu	110138	NM_015836	10352	Hs.523506	NM_015836	ENSG00000116874	WARS2	TrpRS	"tryptophanyl tRNA synthetase 2, mitochondrial"	protein-coding
chr19.53979641.-	chr19	53979641	53979642	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8652	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr14.51123357.+	chr14	51123357	51123358	+	0	NA	"intron (NM_021818, intron 2 of 4)"	AluY|SINE|Alu	11714	NM_021818	60485	Hs.706933	NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador homolog 1 (Drosophila)	protein-coding
chr10.135101664.+	chr10	135101664	135101665	+	0	NA	"exon (NM_001256618, exon 10 of 17)"	"exon (NM_001256618, exon 10 of 17)"	-11257	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr20.57267645.+	chr20	57267645	57267646	+	0	NA	promoter-TSS (NM_024663)	promoter-TSS (NM_024663)	-217	NM_024663	79716	Hs.654868	NM_001204872	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase-like 1	protein-coding
chr5.133503217.-	chr5	133503217	133503218	-	0	NA	"intron (NM_170679, intron 2 of 5)"	MER2|DNA|TcMar-Tigger	-9507	NM_006930	6500	Hs.171626	NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
chr8.609249.-	chr8	609249	609250	-	0	NA	Intergenic	Intergenic	-71977	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr11.66884114.+	chr11	66884114	66884115	+	0	NA	Intergenic	AluSx|SINE|Alu	-2626	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr19.53979659.+	chr19	53979659	53979660	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8670	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr19.19410478.+	chr19	19410478	19410479	+	0	NA	"intron (NM_172231, intron 7 of 13)"	AluY|SINE|Alu	20843	NM_172231	57794	Hs.515274	NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G patch domain containing 1	protein-coding
chr5.77309804.+	chr5	77309804	77309805	+	0	NA	"intron (NM_001271769, intron 26 of 26)"	AluY|SINE|Alu	-237619	NM_004607	6902	Hs.291212	NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
chr11.17788562.+	chr11	17788562	17788563	+	0	NA	"intron (NM_004976, intron 1 of 1)"	AluSx|SINE|Alu	31067	NM_004976	3746	Hs.552896	NM_001112741	ENSG00000129159	KCNC1	KV3.1|KV4|NGK2	"potassium voltage-gated channel, Shaw-related subfamily, member 1"	protein-coding
chr17.78021102.-	chr17	78021102	78021103	-	0	NA	"exon (NM_001243342, exon 4 of 18)"	"exon (NM_001243342, exon 4 of 18)"	-10671	NM_017950	55036	Hs.202542	NM_001243342	ENSG00000141519	CCDC40	CILD15	coiled-coil domain containing 40	protein-coding
chr20.34266413.+	chr20	34266413	34266414	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13535	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr19.19594713.+	chr19	19594713	19594714	+	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	31756	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr22.41111473.+	chr22	41111473	41111474	+	0	NA	Intergenic	AluSc|SINE|Alu	36291	NM_005297	2847	Hs.248122	NM_005297	ENSG00000128285	MCHR1	GPR24|MCH1R|SLC1	melanin-concentrating hormone receptor 1	protein-coding
chrX.21676566.+	chrX	21676566	21676567	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-118	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr1.17034292.+	chr1	17034292	17034293	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12360	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr19.1252661.-	chr19	1252661	1252662	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4109	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr5.18111535.-	chr5	18111535	18111536	-	0	NA	Intergenic	AluY|SINE|Alu	724116	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr19.14156307.-	chr19	14156307	14156308	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13664	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr10.32635522.-	chr10	32635522	32635523	-	0	NA	"intron (NR_073538, intron 1 of 13)"	CpG	-624	NM_001272004	80314	Hs.743354	NM_001272004	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1 (Drosophila)	protein-coding
chr11.41260594.+	chr11	41260594	41260595	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220592	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr3.1900301.-	chr3	1900301	1900302	-	0	NA	Intergenic	AluSp|SINE|Alu	240249	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr9.111767012.-	chr9	111767012	111767013	-	0	NA	"intron (NM_003798, intron 1 of 18)"	AluSg|SINE|Alu	-8752	NM_003798	8727	Hs.58488	NM_003798	ENSG00000119326	CTNNAL1	CLLP|alpha-CATU	"catenin (cadherin-associated protein), alpha-like 1"	protein-coding
chr17.78977917.+	chr17	78977917	78977918	+	0	NA	Intergenic	CpG	12276	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr2.230314752.+	chr2	230314752	230314753	+	0	NA	"intron (NM_139072, intron 7 of 12)"	AluSg|SINE|Alu	-178695	NM_001100818	55022	Hs.409352	NM_001100818	ENSG00000153823	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
chr10.127408397.+	chr10	127408397	127408398	+	0	NA	promoter-TSS (NR_033847)	promoter-TSS (NR_033847)	313	NM_001202438	26098	Hs.468688	NM_001202438	ENSG00000107938	C10orf137	EDRF1	chromosome 10 open reading frame 137	protein-coding
chr5.130576922.-	chr5	130576922	130576923	-	0	NA	Intergenic	AluY|SINE|Alu	22780	NM_020240	56990	Hs.713870	NM_001038702	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
chr9.131639086.+	chr9	131639086	131639087	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5268	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr20.50318738.+	chr20	50318738	50318739	+	0	NA	"intron (NM_006045, intron 4 of 27)"	AluSx1|SINE|Alu	66170	NM_006045	10079	Hs.743248	NM_006045	ENSG00000054793	ATP9A	ATPIIA	"ATPase, class II, type 9A"	protein-coding
chr17.4708693.+	chr17	4708693	4708694	+	0	NA	Intergenic	AluSp|SINE|Alu	-1703	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr14.64976420.-	chr14	64976420	64976421	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5128	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chr10.63228768.+	chr10	63228768	63228769	+	0	NA	Intergenic	AluSq2|SINE|Alu	-15560	NM_178505	219623	Hs.623955	NM_178505	ENSG00000196932	TMEM26	-	transmembrane protein 26	protein-coding
chr17.3627394.+	chr17	3627394	3627395	+	0	NA	"exon (NM_031965, exon 1 of 1)"	"exon (NM_031965, exon 1 of 1)"	197	NM_031965	83903	Hs.534059	NM_031965	ENSG00000177602	GSG2	HASPIN	germ cell associated 2 (haspin)	protein-coding
chr3.173427329.+	chr3	173427329	173427330	+	0	NA	"intron (NM_014932, intron 3 of 6)"	AluSq2|SINE|Alu	311085	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr19.45660396.+	chr19	45660396	45660397	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3012	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr9.139119884.-	chr9	139119884	139119885	-	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	-17803	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr2.905809.+	chr2	905809	905810	+	0	NA	Intergenic	Intergenic	-40745	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr22.41521429.-	chr22	41521429	41521430	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32815	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr19.16626078.-	chr19	16626078	16626079	-	0	NA	"intron (NM_032207, intron 7 of 8)"	AluSx1|SINE|Alu	-18873	NM_032207	84167	Hs.631627	NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
chr5.40801253.-	chr5	40801253	40801254	-	0	NA	Intergenic	SVA_E|Other|Other	2956	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr1.14834345.+	chr1	14834345	14834346	+	0	NA	Intergenic	AluYc|SINE|Alu	-90868	NM_015209	23254	Hs.368823	NM_001017999	ENSG00000189337	KAZN	KAZ	"kazrin, periplakin interacting protein"	protein-coding
chr7.66607938.+	chr7	66607938	66607939	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28554	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr12.110163320.+	chr12	110163320	110163321	+	0	NA	"intron (NM_032829, intron 1 of 2)"	"intron (NM_032829, intron 1 of 2)"	11133	NM_032829	84915	Hs.661785	NM_032829	ENSG00000139438	FAM222A	C12orf34	"family with sequence similarity 222, member A"	protein-coding
chr2.8966052.-	chr2	8966052	8966053	-	0	NA	"intron (NM_020738, intron 2 of 29)"	AluY|SINE|Alu	-11703	NM_020738	57498	Hs.9873	NM_020738	ENSG00000134313	KIDINS220	ARMS	"kinase D-interacting substrate, 220kDa"	protein-coding
chr1.10727939.-	chr1	10727939	10727940	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128794	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chrX.53930559.+	chrX	53930559	53930560	+	0	NA	Intergenic	AluSq2|SINE|Alu	139068	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr8.21777010.-	chr8	21777010	21777011	-	0	NA	promoter-TSS (NM_015024)	promoter-TSS (NM_015024)	170	NM_015024	23039	Hs.172685	NM_001100161	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
chr10.95605018.-	chr10	95605018	95605019	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48712	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr5.178812404.+	chr5	178812404	178812405	+	0	NA	Intergenic	AluY|SINE|Alu	-39973	NM_014244	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr8.46935789.+	chr8	46935789	46935790	+	0	NA	Intergenic	GSATX|Satellite|centr	-816719	NR_027012	497634	Hs.406982	NR_027012	ENSG00000253314	LINC00293	BEYLA|NCRNA00293	long intergenic non-protein coding RNA 293	miscRNA
chr1.59041961.+	chr1	59041961	59041962	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1205	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr19.10587506.-	chr19	10587506	10587507	-	0	NA	Intergenic	AluSq2|SINE|Alu	-23873	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr6.33806257.+	chr6	33806257	33806258	+	0	NA	Intergenic	Intergenic	-34464	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr16.194630.-	chr16	194630	194631	-	0	NA	Intergenic	AluSx3|SINE|Alu	5933	NM_001243249	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr10.134034478.-	chr10	134034478	134034479	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34064	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr20.21284145.-	chr20	21284145	21284146	-	0	NA	"intron (NM_012255, intron 1 of 29)"	CpG	-203	NM_012255	22803	Hs.255932	NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
chr3.45348411.+	chr3	45348411	45348412	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80597	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr1.27687695.+	chr1	27687695	27687696	+	0	NA	"exon (NM_004672, exon 13 of 29)"	"exon (NM_004672, exon 13 of 29)"	5642	NM_004672	9064	Hs.194694	NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
chr8.144512189.-	chr8	144512189	144512190	-	0	NA	"exon (NM_201589, exon 1 of 1)"	"exon (NM_201589, exon 1 of 1)"	-413	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.173941045.+	chr2	173941045	173941046	+	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	480	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr16.33393295.-	chr16	33393295	33393296	-	0	NA	Intergenic	AluSx1|SINE|Alu	94593	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr5.3764369.+	chr5	3764369	3764370	+	0	NA	Intergenic	Intergenic	168201	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr1.144931930.+	chr1	144931930	144931931	+	0	NA	"5' UTR (NM_001002811, exon 1 of 19)"	"5' UTR (NM_001002811, exon 1 of 19)"	102	NM_001002811	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr12.2673063.+	chr12	2673063	2673064	+	0	NA	"intron (NM_001129846, intron 11 of 45)"	"intron (NM_001129846, intron 11 of 45)"	127260	NR_045725	100652846	Hs.683896	NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	miscRNA
chr9.74464953.-	chr9	74464953	74464954	-	0	NA	Intergenic	AluY|SINE|Alu	-61195	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr17.21825592.-	chr17	21825592	21825593	-	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	-222	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr11.66730184.-	chr11	66730184	66730185	-	0	NA	Intergenic	AluSx|SINE|Alu	4337	NM_000920	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr1.40237094.-	chr1	40237094	40237095	-	0	NA	promoter-TSS (NM_022120)	promoter-TSS (NM_022120)	74	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	SCOTT	3-oxoacid CoA transferase 2	protein-coding
chr12.110821773.-	chr12	110821773	110821774	-	0	NA	"intron (NM_016238, intron 6 of 10)"	AluSg4|SINE|Alu	-19762	NM_001137664	51434	Hs.719935	NM_001137664	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
chr13.80902413.-	chr13	80902413	80902414	-	0	NA	Intergenic	AluSp|SINE|Alu	-12673	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr11.113665975.+	chr11	113665975	113665976	+	0	NA	Intergenic	AluSx|SINE|Alu	15457	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr16.75395282.-	chr16	75395282	75395283	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluSz|SINE|Alu	-72105	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
chr5.179167562.-	chr5	179167562	179167563	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7711	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr2.1896152.+	chr2	1896152	1896153	+	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	-147861	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr6.43070148.-	chr6	43070148	43070149	-	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	-25596	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr6.33948489.-	chr6	33948489	33948490	-	0	NA	Intergenic	Intergenic	-19339	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr2.21484577.-	chr2	21484577	21484578	-	0	NA	Intergenic	Intergenic	217632	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr16.723804.-	chr16	723804	723805	-	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	2271	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr13.21644842.-	chr13	21644842	21644843	-	0	NA	Intergenic	AluSx|SINE|Alu	9120	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr17.68536086.+	chr17	68536086	68536087	+	0	NA	Intergenic	AluSx3|SINE|Alu	370410	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	"potassium inwardly-rectifying channel, subfamily J, member 2"	protein-coding
chr9.38829848.-	chr9	38829848	38829849	-	0	NA	Intergenic	AluY|SINE|Alu	-208763	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr6.162998532.-	chr6	162998532	162998533	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149632	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr3.22099195.-	chr3	22099195	22099196	-	0	NA	Intergenic	AluSx|SINE|Alu	306379	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr2.73511615.-	chr2	73511615	73511616	-	0	NA	Intergenic	CpG	-9214	NM_001965	1961	Hs.3052	NM_001965	ENSG00000135625	EGR4	NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
chr11.86869691.-	chr11	86869691	86869692	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-120805	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr6.165953241.+	chr6	165953241	165953242	+	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	122347	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr3.196618953.+	chr3	196618953	196618954	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSc8|SINE|Alu	24226	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr1.242294491.+	chr1	242294491	242294492	+	0	NA	"intron (NM_152666, intron 6 of 10)"	AluSc|SINE|Alu	-132106	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr16.22429197.-	chr16	22429197	22429198	-	0	NA	Intergenic	AluJb|SINE|Alu	19132	NR_027154	641298	Hs.552700	NR_027154	ENSG00000237296	SMG1P1	-	"smg-1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene 1"	pseudo
chr13.51885866.-	chr13	51885866	51885867	-	0	NA	Intergenic	AluSx|SINE|Alu	29302	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr1.24513567.-	chr1	24513567	24513568	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-198	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr13.31023964.+	chr13	31023964	31023965	+	0	NA	Intergenic	AluSq2|SINE|Alu	16117	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr11.100596575.-	chr11	100596575	100596576	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38168	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr2.10150242.-	chr2	10150242	10150243	-	0	NA	Intergenic	Intergenic	33440	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr3.186155939.-	chr3	186155939	186155940	-	0	NA	Intergenic	AluY|SINE|Alu	-55511	NR_033844	253573	Hs.97386	NR_033844	ENSG00000224406	LOC253573	-	uncharacterized LOC253573	miscRNA
chr1.9832289.+	chr1	9832289	9832290	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52261	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr19.18220234.-	chr19	18220234	18220235	-	0	NA	"intron (NM_015016, intron 2 of 26)"	"intron (NM_015016, intron 2 of 26)"	-11631	NM_015016	23031	Hs.466184	NM_015016	ENSG00000099308	MAST3	-	microtubule associated serine/threonine kinase 3	protein-coding
chr7.64349800.+	chr7	64349800	64349801	+	0	NA	Intergenic	CpG	-13820	NR_003099	10793	Hs.520889	NM_021148		ZNF273	HZF9	zinc finger protein 273	protein-coding
chr9.140206021.-	chr9	140206021	140206022	-	0	NA	"intron (NM_017820, intron 19 of 21)"	"intron (NM_017820, intron 19 of 21)"	9318	NM_001004354	441478	Hs.732282	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
chr1.12090109.-	chr1	12090109	12090110	-	0	NA	"exon (NM_021933, exon 8 of 10)"	"exon (NM_021933, exon 8 of 10)"	-10810	NM_021933	60672	Hs.8595	NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
chr17.15325830.-	chr17	15325830	15325831	-	0	NA	Intergenic	L2a|LINE|L2	-45095	NM_001204477	284040	Hs.731765	NM_173622	ENSG00000239704	CDRT4	-	CMT1A duplicated region transcript 4	protein-coding
chr11.40005659.-	chr11	40005659	40005660	-	0	NA	Intergenic	L1PA5|LINE|L1	-309021	NR_047674	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr15.41539491.+	chr15	41539491	41539492	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16054	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr19.11068058.+	chr19	11068058	11068059	+	0	NA	Intergenic	AluSp|SINE|Alu	-3540	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr4.106448047.+	chr4	106448047	106448048	+	0	NA	Intergenic	Intergenic	-25730	NM_017700	54848	Hs.744739	NM_001242729	ENSG00000236699	ARHGEF38	-	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding
chr12.91235788.+	chr12	91235788	91235789	+	0	NA	Intergenic	AluYk11|SINE|Alu	-76012	NR_038868	439916	Hs.350600	NM_001039384	ENSG00000196243	LINC00615	C12orf37	long intergenic non-protein coding RNA 615	miscRNA
chr2.85664942.-	chr2	85664942	85664943	-	0	NA	TTS (NM_198482)	TTS (NM_198482)	-3024	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr2.208657752.+	chr2	208657752	208657753	+	0	NA	Intergenic	AluSx|SINE|Alu	-23609	NM_003468	7855	Hs.17631	NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5	frizzled family receptor 5	protein-coding
chr13.112722065.-	chr13	112722065	112722066	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-152	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr1.40953666.-	chr1	40953666	40953667	-	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	-10364	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr14.105255201.-	chr14	105255201	105255202	-	0	NA	"intron (NM_001014432, intron 3 of 14)"	"intron (NM_001014432, intron 3 of 14)"	-4737	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr2.86777037.+	chr2	86777037	86777038	+	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	13583	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr17.4697255.-	chr17	4697255	4697256	-	0	NA	Intergenic	AluY|SINE|Alu	2184	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr16.85681650.+	chr16	85681650	85681651	+	0	NA	"intron (NM_014615, intron 2 of 15)"	"intron (NM_014615, intron 2 of 15)"	34726	NM_014615	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chrX.88129121.+	chrX	88129121	88129122	+	0	NA	Intergenic	AluY|SINE|Alu	126895	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr19.49964869.+	chr19	49964869	49964870	+	0	NA	"intron (NM_001145396, intron 5 of 15)"	"intron (NM_001145396, intron 5 of 15)"	8396	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr3.122695687.+	chr3	122695687	122695688	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-706	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr10.73650886.-	chr10	73650886	73650887	-	0	NA	Intergenic	Intergenic	39804	NM_002778	5660	Hs.523004	NM_001042465	ENSG00000197746	PSAP	GLBA|SAP1	prosaposin	protein-coding
chr9.14830758.-	chr9	14830758	14830759	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51227	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chrX.18849762.+	chrX	18849762	18849763	+	0	NA	Intergenic	AluY|SINE|Alu	-58652	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr12.75694229.+	chr12	75694229	75694230	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29607	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr1.6471008.-	chr1	6471008	6471009	-	0	NA	Intergenic	AluSz|SINE|Alu	-8971	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr1.156030262.-	chr1	156030262	156030263	-	0	NA	promoter-TSS (NM_020387)	promoter-TSS (NM_020387)	704	NM_020387	57111	Hs.632469	NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	"RAB25, member RAS oncogene family"	protein-coding
chr8.128328706.-	chr8	128328706	128328707	-	0	NA	Intergenic	Intergenic	99151	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr16.22833123.+	chr16	22833123	22833124	+	0	NA	"intron (NM_006043, intron 1 of 1)"	"intron (NM_006043, intron 1 of 1)"	7263	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chrX.144903005.+	chrX	144903005	144903006	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	139	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr13.47735082.+	chr13	47735082	47735083	+	0	NA	Intergenic	LTR12|LTR|ERV1	-263871	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr4.3540632.-	chr4	3540632	3540633	-	0	NA	Intergenic	SVA_D|Other|Other	6408	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr12.49760429.+	chr12	49760429	49760430	+	0	NA	promoter-TSS (NM_023071)	promoter-TSS (NM_023071)	-259	NM_023071	65244	Hs.654826	NM_023071	ENSG00000123352	SPATS2	P59SCR|SCR59|SPATA10	"spermatogenesis associated, serine-rich 2"	protein-coding
chr2.47798057.-	chr2	47798057	47798058	-	0	NA	promoter-TSS (NM_022055)	promoter-TSS (NM_022055)	587	NM_022055	56660	Hs.591586	NM_022055		KCNK12	K2p12.1|THIK-2|THIK2	"potassium channel, subfamily K, member 12"	protein-coding
chr9.86597300.+	chr9	86597300	86597301	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1663	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr1.21835732.-	chr1	21835732	21835733	-	0	NA	promoter-TSS (NM_001177520)	promoter-TSS (NM_001177520)	126	NM_001127501	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr4.186162043.-	chr4	186162043	186162044	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30759	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr8.98771867.+	chr8	98771867	98771868	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15942	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr17.57868954.+	chr17	57868954	57868955	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49673	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr3.99923789.-	chr3	99923789	99923790	-	0	NA	Intergenic	AluSq|SINE|Alu	-19121	NR_028358	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30C	CDC50C	transmembrane protein 30C	pseudo
chr7.99630231.+	chr7	99630231	99630232	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17012	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr3.114903135.+	chr3	114903135	114903136	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37008	NM_015642	26137	Hs.655108	NM_001164342	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
chr14.21558832.-	chr14	21558832	21558833	-	0	NA	TTS (NM_018071)	TTS (NM_018071)	-7976	NM_016423	51222	Hs.250493	NM_001101672	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
chr19.35418189.-	chr19	35418189	35418190	-	0	NA	"intron (NM_001099438, intron 1 of 4)"	CpG	-382	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chrX.125299942.-	chrX	125299942	125299943	-	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	-138	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr17.18179054.+	chr17	18179054	18179055	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14630	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr11.72160486.-	chr11	72160486	72160487	-	0	NA	Intergenic	AluY|SINE|Alu	14762	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr1.16166980.+	chr1	16166980	16166981	+	0	NA	"intron (NR_024279, intron 1 of 1)"	AluSc8|SINE|Alu	-7379	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chr21.47403572.-	chr21	47403572	47403573	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1909	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr5.133831549.+	chr5	133831549	133831550	+	0	NA	Intergenic	AluY|SINE|Alu	-30249	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr10.81060575.+	chr10	81060575	81060576	+	0	NA	"exon (NM_020338, exon 17 of 25)"	"exon (NM_020338, exon 17 of 25)"	-46645	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr10.133869247.+	chr10	133869247	133869248	+	0	NA	Intergenic	Intergenic	-49066	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr16.89034078.+	chr16	89034078	89034079	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9426	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr5.86116413.-	chr5	86116413	86116414	-	0	NA	Intergenic	AluSp|SINE|Alu	-200099	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr9.128471501.-	chr9	128471501	128471502	-	0	NA	Intergenic	AluSc8|SINE|Alu	1988	NM_001006621	79109	Hs.495138	NM_001006617	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
chr10.17622290.-	chr10	17622290	17622291	-	0	NA	Intergenic	AluY|SINE|Alu	-37083	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr11.67346422.+	chr11	67346422	67346423	+	0	NA	Intergenic	AluY|SINE|Alu	-4644	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr20.49196788.+	chr20	49196788	49196789	+	0	NA	"intron (NM_002827, intron 8 of 9)"	"intron (NM_002827, intron 8 of 9)"	-5535	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	miscRNA
chr5.21341898.+	chr5	21341898	21341899	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-117691	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr12.106477569.-	chr12	106477569	106477570	-	0	NA	"intron (NM_014840, intron 4 of 6)"	"intron (NM_014840, intron 4 of 6)"	-56242	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr1.155035094.-	chr1	155035094	155035095	-	0	NA	"non-coding (NR_048579, exon 22 of 22)"	"non-coding (NR_048579, exon 22 of 22)"	1119	NM_182690	1945	Hs.639422	NM_005227	ENSG00000243364	EFNA4	EFL4|EPLG4|LERK4	ephrin-A4	protein-coding
chr2.122878793.+	chr2	122878793	122878794	+	0	NA	Intergenic	AluY|SINE|Alu	365672	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr12.127210858.+	chr12	127210858	127210859	+	0	NA	Intergenic	CpG	-10695	NR_038256	100507206	Hs.662298	NR_038256		LOC100507206	-	uncharacterized LOC100507206	miscRNA
chr19.12606199.-	chr19	12606199	12606200	-	0	NA	Intergenic	CpG	10567	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr7.12736910.+	chr7	12736910	12736911	+	0	NA	Intergenic	AluSg|SINE|Alu	9999	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr1.110881047.-	chr1	110881047	110881048	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-746	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr4.106031838.+	chr4	106031838	106031839	+	0	NA	Intergenic	SVA_E|Other|Other	-35194	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chr6.33806252.+	chr6	33806252	33806253	+	0	NA	Intergenic	Intergenic	-34459	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chrX.18849760.-	chrX	18849760	18849761	-	0	NA	Intergenic	AluY|SINE|Alu	58654	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr1.114299536.+	chr1	114299536	114299537	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2241	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr7.5355956.-	chr7	5355956	5355957	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33395	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr4.39561556.+	chr4	39561556	39561557	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32097	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr1.212898491.+	chr1	212898491	212898492	+	0	NA	Intergenic	SVA_B|Other|Other	-25164	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr16.4835217.-	chr16	4835217	4835218	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3181	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr7.157129495.+	chr7	157129495	157129496	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-215	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr11.31560760.-	chr11	31560760	31560761	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29463	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr18.31802627.-	chr18	31802627	31802628	-	0	NA	promoter-TSS (NM_001198547)	promoter-TSS (NM_001198547)	193	NR_036752	8715	Hs.514795	NM_001198546	ENSG00000101746	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
chr2.101245787.+	chr2	101245787	101245788	+	0	NA	Intergenic	Intergenic	66369	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr12.49163968.+	chr12	49163968	49163969	+	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	1852	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chrX.129097399.+	chrX	129097399	129097400	+	0	NA	Intergenic	Intergenic	-41765	NM_021946	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
chr3.10376229.+	chr3	10376229	10376230	+	0	NA	"intron (NM_001001331, intron 22 of 22)"	"intron (NM_001001331, intron 22 of 22)"	-13371	NR_024272	6396	Hs.166924	NM_001136232	ENSG00000157020	SEC13	D3S1231E|SEC13L1|SEC13R|npp-20	SEC13 homolog (S. cerevisiae)	protein-coding
chr1.31727320.-	chr1	31727320	31727321	-	0	NA	Intergenic	AluY|SINE|Alu	14586	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr2.27588373.-	chr2	27588373	27588374	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4546	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chrX.136631640.+	chrX	136631640	136631641	+	0	NA	Intergenic	Intergenic	-16706	NM_003413	7547	Hs.111227	NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
chr12.121905628.-	chr12	121905628	121905629	-	0	NA	"intron (NM_032590, intron 12 of 22)"	CpG	-67707	NM_194271	80196	Hs.292804	NM_001256858	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	"ring finger protein 34, E3 ubiquitin protein ligase"	protein-coding
chr5.137550359.+	chr5	137550359	137550360	+	0	NA	Intergenic	AluY|SINE|Alu	-1327	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr8.123206118.+	chr8	123206118	123206119	+	0	NA	Intergenic	AluYk4|SINE|Alu	-552488	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
chr8.100115816.+	chr8	100115816	100115817	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90322	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr7.100171832.+	chr7	100171832	100171833	+	0	NA	promoter-TSS (NM_001168682)	promoter-TSS (NM_001168682)	-562	NM_001168682	100316904	Hs.633863	NM_001168682	ENSG00000205307	SAP25	-	"Sin3A-associated protein, 25kDa"	protein-coding
chr7.5257585.+	chr7	5257585	5257586	+	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	3685	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr7.192247.+	chr7	192247	192248	+	0	NA	promoter-TSS (NM_020223)	promoter-TSS (NM_020223)	-722	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	"family with sequence similarity 20, member C"	protein-coding
chr7.63582823.-	chr7	63582823	63582824	-	0	NA	Intergenic	AluJo|SINE|Alu	-77002	NM_001159522	442319	Hs.640774	NM_001159522	ENSG00000257482	ZNF727	-	zinc finger protein 727	protein-coding
chr3.42630503.+	chr3	42630503	42630504	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1795	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr9.111476091.-	chr9	111476091	111476092	-	0	NA	Intergenic	L1PA7|LINE|L1	-142184	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr12.49035834.+	chr12	49035834	49035835	+	0	NA	Intergenic	SVA_A|Other|Other	12467	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr3.189635233.-	chr3	189635233	189635234	-	0	NA	Intergenic	AluSz6|SINE|Alu	-87522	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	miscRNA
chr11.2213901.+	chr11	2213901	2213902	+	0	NA	Intergenic	Intergenic	19608	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr10.129196002.+	chr10	129196002	129196003	+	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	-151611	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr12.107112630.+	chr12	107112630	107112631	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34152	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr10.49732204.-	chr10	49732204	49732205	-	0	NA	"intron (NR_045675, intron 4 of 10)"	CpG	30512	NM_001256026	58504	Hs.655672	NM_001256027	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
chr17.18179058.-	chr17	18179058	18179059	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14634	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr8.98771783.+	chr8	98771783	98771784	+	0	NA	Intergenic	AluSq10|SINE|Alu	-16026	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr20.61021239.-	chr20	61021239	61021240	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18610	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr6.99291373.-	chr6	99291373	99291374	-	0	NA	Intergenic	CpG	-8793	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
chr20.61810562.+	chr20	61810562	61810563	+	0	NA	TTS (NR_029670)	TTS (NR_029670)	710	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3	microRNA 124-3	miscRNA
chr2.11817366.+	chr2	11817366	11817367	+	0	NA	promoter-TSS (NM_001261428)	promoter-TSS (NM_001261428)	-339	NM_001261428	23175	Hs.739141	NM_001261427	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
chrX.152916296.-	chrX	152916296	152916297	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8399	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr9.135947032.-	chr9	135947032	135947033	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9667	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr8.41166063.+	chr8	41166063	41166064	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	927	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr18.19630102.+	chr18	19630102	19630103	+	0	NA	Intergenic	AluY|SINE|Alu	-119302	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr6.38622783.-	chr6	38622783	38622784	-	0	NA	Intergenic	AluSp|SINE|Alu	14859	NM_001099272	114781	Hs.603858	NM_001099272	ENSG00000183826	BTBD9	dJ322I12.1	BTB (POZ) domain containing 9	protein-coding
chr9.95526677.+	chr9	95526677	95526678	+	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	406	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr7.66064180.+	chr7	66064180	66064181	+	0	NA	Intergenic	AluY|SINE|Alu	-20682	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr17.18575681.+	chr17	18575681	18575682	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	813	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chrX.91037191.+	chrX	91037191	91037192	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2931	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr13.99097765.-	chr13	99097765	99097766	-	0	NA	"intron (NM_005766, intron 24 of 26)"	"intron (NM_005766, intron 24 of 26)"	-76576	NM_003576	8428	Hs.508514	NM_001032296	ENSG00000102572	STK24	MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
chr11.82044231.-	chr11	82044231	82044232	-	0	NA	Intergenic	AluSp|SINE|Alu	-400675	NM_175885	220382	Hs.448218	NM_175885	ENSG00000182103	FAM181B	-	"family with sequence similarity 181, member B"	protein-coding
chr4.87023926.+	chr4	87023926	87023927	+	0	NA	"intron (NM_138981, intron 1 of 8)"	AluSc8|SINE|Alu	4880	NM_138981	5602	Hs.125503	NM_002753	ENSG00000109339	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chr7.21582938.+	chr7	21582938	21582939	+	0	NA	"exon (NM_001277115, exon 1 of 82)"	"exon (NM_001277115, exon 1 of 82)"	105	NM_001277115	8701	Hs.744069	NM_001277115	ENSG00000105877	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	"dynein, axonemal, heavy chain 11"	protein-coding
chr17.1389854.-	chr17	1389854	1389855	-	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	803	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr5.170687223.+	chr5	170687223	170687224	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49065	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr11.117881963.+	chr11	117881963	117881964	+	0	NA	Intergenic	Intergenic	24857	NM_001558	3587	Hs.504035	NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	"interleukin 10 receptor, alpha"	protein-coding
chr7.61969436.-	chr7	61969436	61969437	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-794998	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr19.13312470.-	chr19	13312470	13312471	-	0	NA	Intergenic	Intergenic	-51188	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr7.16632873.+	chr7	16632873	16632874	+	0	NA	Intergenic	AluJb|SINE|Alu	52569	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chrX.133565035.+	chrX	133565035	133565036	+	0	NA	Intergenic	AluSp|SINE|Alu	-29140	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr8.14882313.+	chr8	14882313	14882314	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171294	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr5.87348564.-	chr5	87348564	87348565	-	0	NA	Intergenic	L1PA2|LINE|L1	-216101	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr9.10974564.+	chr9	10974564	10974565	+	0	NA	Intergenic	L1PBa|LINE|L1	-361841	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chrX.132930119.-	chrX	132930119	132930120	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189554	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr5.149874648.-	chr5	149874648	149874649	-	0	NA	Intergenic	AluSx4|SINE|Alu	13026	NM_001543	3340	Hs.222055	NM_001543	ENSG00000070614	NDST1	HSST|NST1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding
chr2.192542796.-	chr2	192542796	192542797	-	0	NA	promoter-TSS (NM_001254736)	promoter-TSS (NM_001254736)	2	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chrX.32910757.+	chrX	32910757	32910758	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127560	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr8.27695260.+	chr8	27695260	27695261	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	89	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr14.77600325.+	chr14	77600325	77600326	+	0	NA	"intron (NM_174976, intron 2 of 2)"	"intron (NM_174976, intron 2 of 2)"	7809	NM_174976	283576	Hs.525485	NM_174976	ENSG00000177108	ZDHHC22	C14orf59	"zinc finger, DHHC-type containing 22"	protein-coding
chr2.71357878.+	chr2	71357878	71357879	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	434	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr8.130306070.-	chr8	130306070	130306071	-	0	NA	Intergenic	AluY|SINE|Alu	52584	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LOC728724	-	hCG1814486	miscRNA
chr1.117244833.-	chr1	117244833	117244834	-	0	NA	Intergenic	AluY|SINE|Alu	-30462	NR_031564	100302117		NR_031564	ENSG00000211543	MIR320B1	MIR320B-1|MIRN320B1|hsa-mir-320b-1	microRNA 320b-1	miscRNA
chr9.140099785.-	chr9	140099785	140099786	-	0	NA	promoter-TSS (NM_014434)	promoter-TSS (NM_014434)	-305	NM_053045	94107	Hs.231029	NM_053045	ENSG00000187713	TMEM203	HBEBP1	transmembrane protein 203	protein-coding
chr17.810086.-	chr17	810086	810087	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42735	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr20.20772522.+	chr20	20772522	20772523	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79256	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr8.107613693.+	chr8	107613693	107613694	+	0	NA	"intron (NM_018002, intron 3 of 15)"	MLT1A|LTR|ERVL-MaLR	-56343	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr20.5213522.+	chr20	5213522	5213523	+	0	NA	Intergenic	AluJr4|SINE|Alu	81493	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr17.4453812.+	chr17	4453812	4453813	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4869	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr1.246807615.+	chr1	246807615	246807616	+	0	NA	"intron (NM_001139459, intron 8 of 8)"	AluYc|SINE|Alu	77976	NM_152609	163882	Hs.368353	NM_001139459	ENSG00000162852	CNST	C1orf71|PPP1R64	"consortin, connexin sorting protein"	protein-coding
chr9.129229396.+	chr9	129229396	129229397	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56613	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr18.11086416.-	chr18	11086416	11086417	-	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	-62345	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr3.126260575.+	chr3	126260575	126260576	+	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	17183	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr19.12036009.+	chr19	12036009	12036010	+	0	NA	"5' UTR (NM_144566, exon 1 of 4)"	"5' UTR (NM_144566, exon 1 of 4)"	126	NM_144566	90592	Hs.528486	NM_001271847	ENSG00000196757	ZNF700	-	zinc finger protein 700	protein-coding
chr9.135462123.+	chr9	135462123	135462124	+	0	NA	"intron (NM_020064, intron 1 of 2)"	CpG	4130	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH-like homeobox 1	protein-coding
chr7.100291455.-	chr7	100291455	100291456	-	0	NA	Intergenic	CpG	4585	NM_022574	64599	Hs.414396	NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
chr12.26964558.+	chr12	26964558	26964559	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21573	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr13.106283057.+	chr13	106283057	106283058	+	0	NA	Intergenic	Intergenic	-76161	NR_046391	144920	Hs.567700	NR_046391		LINC00343	NCRNA00343	long intergenic non-protein coding RNA 343	miscRNA
chr19.23432205.-	chr19	23432205	23432206	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx|SINE|Alu	-967	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr4.189084407.+	chr4	189084407	189084408	+	0	NA	Intergenic	AluJr|SINE|Alu	23809	NM_178556	339976	Hs.348618	NM_178556	ENSG00000184108	TRIML1	RNF209	tripartite motif family-like 1	protein-coding
chr14.97125933.+	chr14	97125933	97125934	+	0	NA	Intergenic	AluSz|SINE|Alu	-137751	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr12.127944411.-	chr12	127944411	127944412	-	0	NA	Intergenic	Intergenic	421751	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr15.90792634.-	chr15	90792634	90792635	-	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	130	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr6.12012468.+	chr6	12012468	12012469	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-256	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr11.2158766.-	chr11	2158766	2158767	-	0	NA	"intron (NM_001007139, intron 2 of 4)"	"intron (NM_001007139, intron 2 of 4)"	-1438	NM_000612	3481	Hs.272259	NM_000612	ENSG00000167244	IGF2	C11orf43|IGF-II|PP9974	insulin-like growth factor 2 (somatomedin A)	protein-coding
chr20.43342088.-	chr20	43342088	43342089	-	0	NA	Intergenic	AluSx|SINE|Alu	1797	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr7.99698283.-	chr7	99698283	99698284	-	0	NA	promoter-TSS (NM_182776)	promoter-TSS (NM_182776)	-97	NM_182776	4176	Hs.438720	NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146	minichromosome maintenance complex component 7	protein-coding
chr22.51001372.+	chr22	51001372	51001373	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-44	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr7.33164243.-	chr7	33164243	33164244	-	0	NA	Intergenic	AluYf5|SINE|Alu	4909	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr1.38281045.+	chr1	38281045	38281046	+	0	NA	"exon (NM_005955, exon 11 of 11)"	"exon (NM_005955, exon 11 of 11)"	-7180	NM_024640	79693	Hs.301564	NM_024640	ENSG00000196449	YRDC	DRIP3|IRIP|RP11-109P14.4|SUA5	yrdC domain containing (E. coli)	protein-coding
chr12.79439014.-	chr12	79439014	79439015	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	419	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chrX.132930067.+	chrX	132930067	132930068	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189606	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr9.38424628.+	chr9	38424628	38424629	+	0	NA	promoter-TSS (NM_001007563)	promoter-TSS (NM_001007563)	-184	NM_001007563	347252	Hs.349705	NM_001007563	ENSG00000137142	IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin-like growth factor binding protein-like 1	protein-coding
chr17.4435101.+	chr17	4435101	4435102	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23580	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr12.126371188.+	chr12	126371188	126371189	+	0	NA	Intergenic	AluY|SINE|Alu	96732	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chr7.5355893.-	chr7	5355893	5355894	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33332	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr19.2034083.-	chr19	2034083	2034084	-	0	NA	Intergenic	Intergenic	-17160	NM_199054	2872	Hs.515032	NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAP kinase interacting serine/threonine kinase 2	protein-coding
chr22.46326772.+	chr22	46326772	46326773	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46236	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr20.49112567.-	chr20	49112567	49112568	-	0	NA	Intergenic	AluY|SINE|Alu	14324	NM_002827	5770	Hs.417549	NM_002827	ENSG00000196396	PTPN1	PTP1B	"protein tyrosine phosphatase, non-receptor type 1"	protein-coding
chr10.43692974.-	chr10	43692974	43692975	-	0	NA	"intron (NM_145313, intron 10 of 12)"	"intron (NM_145313, intron 10 of 12)"	-59081	NM_018590	55454	Hs.744559	NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|GALNACT-2|GALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
chr18.70912344.+	chr18	70912344	70912345	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19389	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr16.3755364.-	chr16	3755364	3755365	-	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	-12234	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr17.78559321.-	chr17	78559321	78559322	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40696	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr9.861783.-	chr9	861783	861784	-	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	-20093	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr6.7878967.+	chr6	7878967	7878968	+	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	31343	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr2.107872733.+	chr2	107872733	107872734	+	0	NA	Intergenic	Intergenic	-369170	NM_032528	84620	Hs.98265	NM_001142351	ENSG00000144057	ST6GAL2	SIAT2|ST6GalII	"ST6 beta-galactosamide alpha-2,6-sialyltranferase 2"	protein-coding
chr1.229762164.-	chr1	229762164	229762165	-	0	NA	promoter-TSS (NM_001025247)	promoter-TSS (NM_001025247)	-183	NM_014777	9816	Hs.533628	NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding
chr10.104474385.-	chr10	104474385	104474386	-	0	NA	promoter-TSS (NM_004311)	promoter-TSS (NM_004311)	-87	NM_178858	118980	Hs.44070	NM_178858	ENSG00000156398	SFXN2	-	sideroflexin 2	protein-coding
chr3.1144610.+	chr3	1144610	1144611	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9981	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr13.112769122.+	chr13	112769122	112769123	+	0	NA	Intergenic	L2a|LINE|L2	47209	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr17.78021103.-	chr17	78021103	78021104	-	0	NA	"exon (NM_001243342, exon 4 of 18)"	"exon (NM_001243342, exon 4 of 18)"	-10672	NM_017950	55036	Hs.202542	NM_001243342	ENSG00000141519	CCDC40	CILD15	coiled-coil domain containing 40	protein-coding
chr2.10163554.+	chr2	10163554	10163555	+	0	NA	Intergenic	Intergenic	-20128	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr1.151742006.-	chr1	151742006	151742007	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2875	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr14.97183875.-	chr14	97183875	97183876	-	0	NA	Intergenic	AluY|SINE|Alu	79809	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr15.75840708.-	chr15	75840708	75840709	-	0	NA	"intron (NM_002833, intron 1 of 12)"	AluSq2|SINE|Alu	-30917	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	"protein tyrosine phosphatase, non-receptor type 9"	protein-coding
chr14.64976413.-	chr14	64976413	64976414	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5121	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chrX.20694439.-	chrX	20694439	20694440	-	0	NA	Intergenic	AluY|SINE|Alu	409689	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr15.29130803.-	chr15	29130803	29130804	-	0	NA	Intergenic	CpG	36982	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr3.42642506.+	chr3	42642506	42642507	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	66	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr17.79988629.-	chr17	79988629	79988630	-	0	NA	promoter-TSS (NM_005052)	promoter-TSS (NM_005052)	903	NM_005052	5881	Hs.45002	NM_005052	ENSG00000169750	RAC3	-	"ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)"	protein-coding
chr5.1494533.-	chr5	1494533	1494534	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29543	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr5.171434001.+	chr5	171434001	171434002	+	0	NA	promoter-TSS (NM_012300)	promoter-TSS (NM_012300)	-124	NM_033645	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr14.35080564.+	chr14	35080564	35080565	+	0	NA	"intron (NM_021249, intron 1 of 12)"	AluSz6|SINE|Alu	18751	NM_021249	58533	Hs.356647	NM_152233	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
chr21.46737162.-	chr21	46737162	46737163	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29195	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr7.30721591.+	chr7	30721591	30721592	+	0	NA	"exon (NM_001202482, exon 2 of 12)"	"exon (NM_001202482, exon 2 of 12)"	550	NM_001202482	1395	Hs.729970	NM_001202475		CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
chr8.56758273.-	chr8	56758273	56758274	-	0	NA	Intergenic	AluSx3|SINE|Alu	34113	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr15.92290004.-	chr15	92290004	92290005	-	0	NA	Intergenic	AluY|SINE|Alu	106934	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr2.242504638.-	chr2	242504638	242504639	-	0	NA	"intron (NM_032515, intron 3 of 4)"	"intron (NM_032515, intron 3 of 4)"	6080	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr2.71562009.+	chr2	71562009	71562010	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3124	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr15.93174886.+	chr15	93174886	93174887	+	0	NA	"intron (NM_207446, intron 1 of 2)"	AluY|SINE|Alu	24145	NM_207446	400451	Hs.702316	NM_207446	ENSG00000185442	FAM174B	-	"family with sequence similarity 174, member B"	protein-coding
chr8.29303378.+	chr8	29303378	29303379	+	0	NA	Intergenic	AluSx3|SINE|Alu	-95111	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
chr1.47311874.+	chr1	47311874	47311875	+	0	NA	"intron (NR_002788, intron 9 of 11)"	L1PA5|LINE|L1	47204	NM_000779	1580	Hs.436317	NM_000779	ENSG00000142973	CYP4B1	CYPIVB1|P-450HP	"cytochrome P450, family 4, subfamily B, polypeptide 1"	protein-coding
chr22.38336385.-	chr22	38336385	38336386	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13269	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr9.140604146.-	chr9	140604146	140604147	-	0	NA	"intron (NM_001145527, intron 1 of 15)"	"intron (NM_001145527, intron 1 of 15)"	53328	NR_024341	643210	Hs.721002	NM_001039765		FLJ40292	-	uncharacterized LOC643210	miscRNA
chr6.71104381.+	chr6	71104381	71104382	+	0	NA	Intergenic	MER48|LTR|ERV1	-18726	NM_020819	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr16.86962842.-	chr16	86962842	86962843	-	0	NA	Intergenic	Intergenic	-350727	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr2.238396164.-	chr2	238396164	238396165	-	0	NA	"intron (NM_001042467, intron 1 of 14)"	CpG	-286	NM_024101	79083	Hs.102406	NM_001042467	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
chr9.94169598.+	chr9	94169598	94169599	+	0	NA	Intergenic	AluY|SINE|Alu	16546	NM_005384	4783	Hs.79334	NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	"nuclear factor, interleukin 3 regulated"	protein-coding
chr16.1838767.+	chr16	1838767	1838768	+	0	NA	"3' UTR (NM_012225, exon 7 of 7)"	"3' UTR (NM_012225, exon 7 of 7)"	4967	NM_004970	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.1474489.+	chr7	1474489	1474490	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24620	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr11.17160899.+	chr11	17160899	17160900	+	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	30455	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr9.10974562.-	chr9	10974562	10974563	-	0	NA	Intergenic	L1PBa|LINE|L1	361839	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr3.192348600.+	chr3	192348600	192348601	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96788	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr19.7123154.+	chr19	7123154	7123155	+	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	53683	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr8.143373423.+	chr8	143373423	143373424	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93706	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr19.17585846.+	chr19	17585846	17585847	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4546	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr15.91599293.-	chr15	91599293	91599294	-	0	NA	Intergenic	Intergenic	33460	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr4.116121647.-	chr4	116121647	116121648	-	0	NA	Intergenic	LTR12C|LTR|ERV1	86615	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	NDST-4|NHSST4	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4	protein-coding
chr11.8302427.-	chr11	8302427	8302428	-	0	NA	Intergenic	AluY|SINE|Alu	12245	NM_001270428	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
chr17.10101792.-	chr17	10101792	10101793	-	0	NA	promoter-TSS (NM_201433)	promoter-TSS (NM_201433)	-76	NM_201433	8522	Hs.462214	NM_001130831	ENSG00000007237	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
chr17.78021119.-	chr17	78021119	78021120	-	0	NA	"exon (NM_001243342, exon 4 of 18)"	"exon (NM_001243342, exon 4 of 18)"	-10688	NM_017950	55036	Hs.202542	NM_001243342	ENSG00000141519	CCDC40	CILD15	coiled-coil domain containing 40	protein-coding
chr2.61595303.+	chr2	61595303	61595304	+	0	NA	"intron (NM_014709, intron 10 of 79)"	AluSc|SINE|Alu	49209	NR_003707	100124537	Hs.675825	NR_003707		SNORA70B	-	"small nucleolar RNA, H/ACA box 70B"	snoRNA
chr17.9202878.-	chr17	9202878	9202879	-	0	NA	"intron (NM_004853, intron 7 of 7)"	AluY|SINE|Alu	-276397	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
chr7.73456643.+	chr7	73456643	73456644	+	0	NA	"intron (NM_001081753, intron 5 of 30)"	AluJb|SINE|Alu	14216	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr16.71647937.-	chr16	71647937	71647938	-	0	NA	Intergenic	AluSz|SINE|Alu	12119	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr14.19890144.-	chr14	19890144	19890145	-	0	NA	Intergenic	CpG	4225	NR_073460	101101776	Hs.617315	NR_073460		LOC101101776	-	ribosome biogenesis protein BMS1 homolog pseudogene	pseudo
chr9.425351.+	chr9	425351	425352	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44943	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr8.124194968.+	chr8	124194968	124194969	+	0	NA	"5' UTR (NM_032899, exon 1 of 4)"	"5' UTR (NM_032899, exon 1 of 4)"	216	NM_032899	84985	Hs.379821	NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	"family with sequence similarity 83, member A"	protein-coding
chr22.21042876.+	chr22	21042876	21042877	+	0	NA	promoter-TSS (NR_024592)	promoter-TSS (NR_024592)	-967	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr7.50561968.-	chr7	50561968	50561969	-	0	NA	"intron (NM_001242890, intron 9 of 9)"	AluY|SINE|Alu	37489	NR_033845	100129427	Hs.680434	NR_033845	ENSG00000226122	LOC100129427	-	uncharacterized LOC100129427	miscRNA
chr10.76198265.+	chr10	76198265	76198266	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262018	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr17.12456652.+	chr17	12456652	12456653	+	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	3367	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr1.54775797.-	chr1	54775797	54775798	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96182	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr6.2221762.-	chr6	2221762	2221763	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24106	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr2.68031692.+	chr2	68031692	68031693	+	0	NA	Intergenic	AluY|SINE|Alu	258467	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr2.62740971.-	chr2	62740971	62740972	-	0	NA	Intergenic	AluY|SINE|Alu	7367	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chrX.134156680.+	chrX	134156680	134156681	+	0	NA	promoter-TSS (NM_001078173)	promoter-TSS (NM_001078173)	-114	NM_001078173	441518	Hs.378813	NM_001078173	ENSG00000212747	FAM127C	CXX1c|MAR8B	"family with sequence similarity 127, member C"	protein-coding
chr5.17207784.-	chr5	17207784	17207785	-	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	9148	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr8.141030035.+	chr8	141030035	141030036	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314736	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr7.100719599.-	chr7	100719599	100719600	-	0	NA	Intergenic	AluJr|SINE|Alu	9187	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr17.18178968.+	chr17	18178968	18178969	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14544	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr19.36762813.+	chr19	36762813	36762814	+	0	NA	Intergenic	SST1|Satellite|centr	-39432	NR_029389	100134317	Hs.729610	NR_029389		LOC100134317	-	uncharacterized LOC100134317	miscRNA
chr17.57884676.+	chr17	57884676	57884677	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33951	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr12.8831011.-	chr12	8831011	8831012	-	0	NA	Intergenic	AluSp|SINE|Alu	15578	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr2.101214344.+	chr2	101214344	101214345	+	0	NA	Intergenic	AluY|SINE|Alu	34926	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.39267410.+	chr2	39267410	39267411	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79925	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr13.21562765.-	chr13	21562765	21562766	-	0	NA	"exon (NM_014572, exon 4 of 8)"	"exon (NM_014572, exon 4 of 8)"	-72957	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr9.34329545.+	chr9	34329545	34329546	+	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	41	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr10.134216438.-	chr10	134216438	134216439	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5736	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr11.110086009.-	chr11	110086009	110086010	-	0	NA	"intron (NM_001260493, intron 14 of 15)"	AluY|SINE|Alu	-81428	NM_001260495	5962	Hs.741211	NM_001260492	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
chr19.46914707.+	chr19	46914707	46914708	+	0	NA	"exon (NM_032040, exon 1 of 1)"	"exon (NM_032040, exon 1 of 1)"	2212	NM_032040	83987	Hs.744359	NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
chr11.31560753.+	chr11	31560753	31560754	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29456	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr7.40164637.-	chr7	40164637	40164638	-	0	NA	Intergenic	AluY|SINE|Alu	-9614	NM_138701	136647	Hs.654989	NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20	M-phase specific PLK1 interacting protein	protein-coding
chr1.80177683.-	chr1	80177683	80177684	-	0	NA	Intergenic	AluSx|SINE|Alu	705188	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr14.101679090.-	chr14	101679090	101679091	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142842	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr4.106031869.+	chr4	106031869	106031870	+	0	NA	Intergenic	SVA_E|Other|Other	-35163	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chr10.1577560.-	chr10	1577560	1577561	-	0	NA	"intron (NR_033387, intron 1 of 1)"	"intron (NR_033387, intron 1 of 1)"	-8735	NR_033387	642394	Hs.568831	NR_033387	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	miscRNA
chr7.95234907.+	chr7	95234907	95234908	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8982	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr17.71108163.-	chr17	71108163	71108164	-	0	NA	Intergenic	AluY|SINE|Alu	19310	NM_001159770	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr6.168465589.+	chr6	168465589	168465590	+	0	NA	"exon (NM_024919, exon 5 of 11)"	"exon (NM_024919, exon 5 of 11)"	10943	NM_001122841	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr7.560583.-	chr7	560583	560584	-	0	NA	"non-coding (NR_033963, exon 1 of 3)"	"non-coding (NR_033963, exon 1 of 3)"	-555	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr2.136760862.-	chr2	136760862	136760863	-	0	NA	Intergenic	AluSq2|SINE|Alu	17640	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr1.113544056.+	chr1	113544056	113544057	+	0	NA	Intergenic	AluY|SINE|Alu	-45081	NM_003051	6566	Hs.75231	NM_001166496	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1	"solute carrier family 16, member 1 (monocarboxylic acid transporter 1)"	protein-coding
chr7.143105828.-	chr7	143105828	143105829	-	0	NA	"exon (NM_005232, exon 1 of 18)"	"exon (NM_005232, exon 1 of 18)"	-157	NM_005232	2041	Hs.89839	NM_005232	ENSG00000146904	EPHA1	EPH|EPHT|EPHT1	EPH receptor A1	protein-coding
chr10.71044917.-	chr10	71044917	71044918	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15161	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr9.139616026.+	chr9	139616026	139616027	+	0	NA	"intron (NM_152421, intron 2 of 4)"	"intron (NM_152421, intron 2 of 4)"	4663	NR_002975	677824	Hs.495480	NR_002975	ENSG00000199437	SNORA43	ACA43	"small nucleolar RNA, H/ACA box 43"	snoRNA
chr4.185174257.-	chr4	185174257	185174258	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35143	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr17.46916871.+	chr17	46916871	46916872	+	0	NA	"intron (NM_001261395, intron 1 of 11)"	AluSx1|SINE|Alu	8521	NM_001261393	10241	Hs.514920	NM_001261390	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
chr17.47288238.-	chr17	47288238	47288239	-	0	NA	promoter-TSS (NM_001198754)	promoter-TSS (NM_001198754)	302	NM_001198754	2793	Hs.181781	NM_001198754	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8	"guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2"	protein-coding
chr22.38498877.+	chr22	38498877	38498878	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7799	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr12.127944425.-	chr12	127944425	127944426	-	0	NA	Intergenic	Intergenic	421737	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr20.46387689.-	chr20	46387689	46387690	-	0	NA	"intron (NM_198596, intron 1 of 20)"	"intron (NM_198596, intron 1 of 20)"	-27119	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr12.113725957.+	chr12	113725957	113725958	+	0	NA	"intron (NM_001143819, intron 20 of 28)"	"intron (NM_001143819, intron 20 of 28)"	46968	NM_024959	80024	Hs.286194	NM_024959	ENSG00000089060	SLC24A6	NCKX6|NCLX	"solute carrier family 24 (sodium/lithium/calcium exchanger), member 6"	protein-coding
chrX.107355825.-	chrX	107355825	107355826	-	0	NA	"intron (NM_052936, intron 1 of 12)"	AluY|SINE|Alu	-20926	NM_178270	115201	Hs.8763	NM_052936	ENSG00000101844	ATG4A	APG4A|AUTL2	"autophagy related 4A, cysteine peptidase"	protein-coding
chr6.2221741.+	chr6	2221741	2221742	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24127	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr1.17266919.-	chr1	17266919	17266920	-	0	NA	"intron (NM_014675, intron 13 of 36)"	AluSg7|SINE|Alu	-18474	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr9.139780623.-	chr9	139780623	139780624	-	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	342	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr6.41732898.+	chr6	41732898	41732899	+	0	NA	Intergenic	AluSx1|SINE|Alu	14732	NM_006653	10817	Hs.194208	NM_006653	ENSG00000137218	FRS3	FRS2B|FRS2beta|SNT-2|SNT2	fibroblast growth factor receptor substrate 3	protein-coding
chr21.45243648.+	chr21	45243648	45243649	+	0	NA	Intergenic	Intergenic	-11200	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr20.61964651.+	chr20	61964651	61964652	+	0	NA	Intergenic	Intergenic	28097	NM_000744	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr18.2377779.-	chr18	2377779	2377780	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193710	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr6.88932913.+	chr6	88932913	88932914	+	0	NA	Intergenic	AluY|SINE|Alu	-57146	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chr5.37295968.-	chr5	37295968	37295969	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46438	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr20.48684849.+	chr20	48684849	48684850	+	0	NA	Intergenic	Intergenic	-26683	NR_051976	100887755	Hs.195705	NR_051976		LINC00651	-	long intergenic non-protein coding RNA 651	miscRNA
chr17.78559328.+	chr17	78559328	78559329	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40703	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr20.2673443.-	chr20	2673443	2673444	-	0	NA	promoter-TSS (NM_001110514)	promoter-TSS (NM_001110514)	81	NM_001110514	57593	Hs.471955	NM_001110514	ENSG00000088881	EBF4	COE4|O/E-4	early B-cell factor 4	protein-coding
chr19.644298.-	chr19	644298	644299	-	0	NA	TTS (NM_020637)	TTS (NM_020637)	-4372	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr12.105389723.+	chr12	105389723	105389724	+	0	NA	Intergenic	AluY|SINE|Alu	9625	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr12.133328240.+	chr12	133328240	133328241	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10211	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr19.47364559.+	chr19	47364559	47364560	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-10356	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr19.14156295.-	chr19	14156295	14156296	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13676	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr13.34113105.+	chr13	34113105	34113106	+	0	NA	"intron (NM_001243476, intron 3 of 17)"	AluY|SINE|Alu	137827	NM_001243476	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr16.87446535.+	chr16	87446535	87446536	+	0	NA	"exon (NM_015144, exon 12 of 13)"	"exon (NM_015144, exon 12 of 13)"	20734	NM_022818	81631	Hs.356061	NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule-associated protein 1 light chain 3 beta	protein-coding
chr12.112407411.-	chr12	112407411	112407412	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43612	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr1.6471018.-	chr1	6471018	6471019	-	0	NA	Intergenic	AluSz|SINE|Alu	-8961	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr22.19583890.-	chr22	19583890	19583891	-	0	NA	Intergenic	AluY|SINE|Alu	29528	NR_024381	150185	Hs.723715	NR_024381		LOC150185	-	uncharacterized LOC150185	miscRNA
chr8.23098502.+	chr8	23098502	23098503	+	0	NA	Intergenic	AluY|SINE|Alu	-2648	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr10.324330.-	chr10	324330	324331	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98396	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr4.26862478.+	chr4	26862478	26862479	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	165	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr13.66584787.+	chr13	66584787	66584788	+	0	NA	Intergenic	AluY|SINE|Alu	-814514	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr19.34394363.+	chr19	34394363	34394364	+	0	NA	Intergenic	AluSx1|SINE|Alu	106612	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr11.31560748.-	chr11	31560748	31560749	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29451	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr9.138476829.+	chr9	138476829	138476830	+	0	NA	"intron (NR_034017, intron 4 of 4)"	"intron (NR_034017, intron 4 of 4)"	10058	NR_034017	100130954	Hs.550769	NR_034016	ENSG00000237339	LOC100130954	-	uncharacterized LOC100130954	miscRNA
chr1.40953673.-	chr1	40953673	40953674	-	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	-10371	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr20.46019503.+	chr20	46019503	46019504	+	0	NA	Intergenic	AluY|SINE|Alu	-34029	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr17.65843555.-	chr17	65843555	65843556	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21775	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr2.20739866.-	chr2	20739866	20739867	-	0	NA	Intergenic	Intergenic	-93031	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
chr10.14851260.+	chr10	14851260	14851261	+	0	NA	Intergenic	AluY|SINE|Alu	28723	NM_001029954	441549	Hs.559067	NM_001029954		CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
chr15.41613104.+	chr15	41613104	41613105	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11715	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr11.66354664.-	chr11	66354664	66354665	-	0	NA	Intergenic	SVA_F|Other|Other	-5890	NM_018219	55231	Hs.121072	NM_018219	ENSG00000182791	CCDC87	-	coiled-coil domain containing 87	protein-coding
chr1.212973169.+	chr1	212973169	212973170	+	0	NA	"intron (NM_001146170, intron 4 of 8)"	AluSz6|SINE|Alu	7999	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
chr12.6866147.+	chr12	6866147	6866148	+	0	NA	Intergenic	AluSp|SINE|Alu	-3511	NR_026581	8079	Hs.524214	NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
chrX.153657108.-	chrX	153657108	153657109	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-130	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr1.217394791.+	chr1	217394791	217394792	+	0	NA	Intergenic	AluSq2|SINE|Alu	-83694	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr6.4780649.+	chr6	4780649	4780650	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3969	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr16.1228061.+	chr16	1228061	1228062	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24820	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr2.21484574.-	chr2	21484574	21484575	-	0	NA	Intergenic	Intergenic	217629	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr12.58005003.-	chr12	58005003	58005004	-	0	NA	promoter-TSS (NR_046223)	promoter-TSS (NR_046223)	215	NR_046223	115557	Hs.61581	NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding
chr19.3766720.-	chr19	3766720	3766721	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4055	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chrX.9439589.-	chrX	9439589	9439590	-	0	NA	"intron (NM_005647, intron 1 of 17)"	"intron (NM_005647, intron 1 of 17)"	-6388	NM_005647	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr15.100080083.-	chr15	100080083	100080084	-	0	NA	Intergenic	AluSq2|SINE|Alu	26050	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr22.49948649.+	chr22	49948649	49948650	+	0	NA	Intergenic	Intergenic	102541	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr12.8778542.+	chr12	8778542	8778543	+	0	NA	Intergenic	SVA_E|Other|Other	-13100	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr2.240371715.-	chr2	240371715	240371716	-	0	NA	Intergenic	SVA_D|Other|Other	49072	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr6.138984622.+	chr6	138984622	138984623	+	0	NA	Intergenic	AluSp|SINE|Alu	-28183	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr13.41885935.-	chr13	41885935	41885936	-	0	NA	"intron (NM_024561, intron 1 of 19)"	CpG	-594	NM_001110798	79612	Hs.512914	NM_001110798	ENSG00000172766	NAA16	NARG1L	"N(alpha)-acetyltransferase 16, NatA auxiliary subunit"	protein-coding
chr5.176292812.+	chr5	176292812	176292813	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33521	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr7.5355964.-	chr7	5355964	5355965	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33403	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr17.26336767.-	chr17	26336767	26336768	-	0	NA	Intergenic	AluSz|SINE|Alu	32921	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr3.22843315.-	chr3	22843315	22843316	-	0	NA	Intergenic	L1PA2|LINE|L1	401469	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr7.55379434.+	chr7	55379434	55379435	+	0	NA	Intergenic	SVA_D|Other|Other	-53707	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr3.170641488.-	chr3	170641488	170641489	-	0	NA	Intergenic	SVA_C|Other|Other	15062	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr16.56485171.-	chr16	56485171	56485172	-	0	NA	promoter-TSS (NM_007006)	promoter-TSS (NM_007006)	-90	NM_007006	11051	Hs.528834	NM_007006	ENSG00000167005	NUDT21	CFIM25|CPSF5	nudix (nucleoside diphosphate linked moiety X)-type motif 21	protein-coding
chr16.16470783.+	chr16	16470783	16470784	+	0	NA	Intergenic	Intergenic	59317	NR_036447	339044	Hs.743246	XR_172152		PKD1P1	HG1	polycystic kidney disease 1 (autosomal dominant) pseudogene 1	pseudo
chr11.73347277.+	chr11	73347277	73347278	+	0	NA	Intergenic	AluSq|SINE|Alu	-9946	NM_001130033	58473	Hs.445489	NM_001130033	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	"pleckstrin homology domain containing, family B (evectins) member 1"	protein-coding
chr15.64723788.+	chr15	64723788	64723789	+	0	NA	"intron (NM_016213, intron 11 of 12)"	AluSx1|SINE|Alu	43785	NM_016213	9325	Hs.500340	NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391	thyroid hormone receptor interactor 4	protein-coding
chr11.9243447.-	chr11	9243447	9243448	-	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	-43426	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr9.140061913.+	chr9	140061913	140061914	+	0	NA	"exon (NM_007327, exon 20 of 20)"	"exon (NM_007327, exon 20 of 20)"	1809	NR_037416	100500811		NR_037416		MIR3621	-	microRNA 3621	miscRNA
chr19.59050236.-	chr19	59050236	59050237	-	0	NA	Intergenic	CpG	5600	NM_005762	10155	Hs.467408	NM_005762	ENSG00000130726	TRIM28	KAP1|RNF96|TF1B|TIF1B	tripartite motif containing 28	protein-coding
chr21.15448586.+	chr21	15448586	15448587	+	0	NA	Intergenic	Intergenic	-95821	NR_027270	391267	Hs.364456	NM_153750	ENSG00000215559	ANKRD20A11P	C21orf81	"ankyrin repeat domain 20 family, member A11, pseudogene"	pseudo
chr6.33806254.+	chr6	33806254	33806255	+	0	NA	Intergenic	Intergenic	-34461	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr20.5213545.-	chr20	5213545	5213546	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81470	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr16.75395283.-	chr16	75395283	75395284	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluSz|SINE|Alu	-72104	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
chr12.121338306.-	chr12	121338306	121338307	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	-3849	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr15.90792631.+	chr15	90792631	90792632	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-133	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr15.51032391.-	chr15	51032391	51032392	-	0	NA	"intron (NM_032802, intron 5 of 14)"	AluSp|SINE|Alu	-25519	NM_032802	84888	Hs.401537	NM_032802	ENSG00000138600	SPPL2A	IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
chr1.97228929.+	chr1	97228929	97228930	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41754	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr16.17617295.-	chr16	17617295	17617296	-	0	NA	Intergenic	AluSz|SINE|Alu	52557	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr8.8559288.-	chr8	8559288	8559289	-	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	378	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr10.126538905.-	chr10	126538905	126538906	-	0	NA	Intergenic	AluSc|SINE|Alu	-48551	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr7.45118132.+	chr7	45118132	45118133	+	0	NA	Intergenic	Intergenic	10361	NM_001146334	23148	Hs.96633	NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
chr5.3764113.+	chr5	3764113	3764114	+	0	NA	Intergenic	Intergenic	167945	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr20.62586829.-	chr20	62586829	62586830	-	0	NA	"non-coding (NR_027287, exon 1 of 2)"	"non-coding (NR_027287, exon 1 of 2)"	-971	NM_017859	54963	Hs.504998	NM_001193379	ENSG00000198276	UCKL1	UCK1-LIKE|UCK1L|URKL1	uridine-cytidine kinase 1-like 1	protein-coding
chr5.180633759.+	chr5	180633759	180633760	+	0	NA	Intergenic	Intergenic	-1582	NM_203293	81786	Hs.487412	NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
chr8.86574479.+	chr8	86574479	86574480	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	263	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr7.7547626.-	chr7	7547626	7547627	-	0	NA	"intron (NM_001037763, intron 9 of 34)"	AluY|SINE|Alu	-27834	NM_001037763	340267	Hs.491104	NM_001037763	ENSG00000215018	COL28A1	COL28	"collagen, type XXVIII, alpha 1"	protein-coding
chr6.1610258.+	chr6	1610258	1610259	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-423	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr11.4520316.-	chr11	4520316	4520317	-	0	NA	Intergenic	AluY|SINE|Alu	-10207	NM_001005171	390036	Hs.553726	NM_001005171	ENSG00000196778	OR52K1	OR11-8	"olfactory receptor, family 52, subfamily K, member 1"	protein-coding
chr19.8298167.-	chr19	8298167	8298168	-	0	NA	"intron (NM_024552, intron 2 of 11)"	AluSx|SINE|Alu	-23950	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
chr9.74827311.-	chr9	74827311	74827312	-	0	NA	"intron (NM_001242505, intron 4 of 15)"	AluY|SINE|Alu	-63044	NM_004293	9615	Hs.494163	NM_001242505	ENSG00000119125	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
chr16.69735140.+	chr16	69735140	69735141	+	0	NA	"3' UTR (NM_001113178, exon 15 of 15)"	"3' UTR (NM_001113178, exon 15 of 15)"	25393	NM_001025434	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	"NAD(P)H dehydrogenase, quinone 1"	protein-coding
chr19.35532719.+	chr19	35532719	35532720	+	0	NA	"5' UTR (NM_182983, exon 2 of 13)"	"5' UTR (NM_182983, exon 2 of 13)"	1309	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr4.185174235.-	chr4	185174235	185174236	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35121	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr2.44294155.-	chr2	44294155	44294156	-	0	NA	Intergenic	SVA_D|Other|Other	71011	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr16.53232372.-	chr16	53232372	53232373	-	0	NA	"intron (NM_025134, intron 2 of 38)"	AluSc8|SINE|Alu	-143427	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chrX.73102287.+	chrX	73102287	73102288	+	0	NA	Intergenic	SVA_B|Other|Other	-29699	NR_001564	7503	Hs.655450	NR_001564	ENSG00000229807	XIST	DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66	X inactive specific transcript (non-protein coding)	miscRNA
chr9.719231.-	chr9	719231	719232	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12425	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr17.7493219.+	chr17	7493219	7493220	+	0	NA	"5' UTR (NM_006942, exon 1 of 2)"	"5' UTR (NM_006942, exon 1 of 2)"	269	NM_006942	6665	Hs.95582	NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY (sex determining region Y)-box 15	protein-coding
chr20.24450368.-	chr20	24450368	24450369	-	0	NA	"5' UTR (NM_024893, exon 1 of 4)"	"5' UTR (NM_024893, exon 1 of 4)"	-533	NM_024893	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
chr1.3155259.+	chr1	3155259	3155260	+	0	NA	"intron (NM_199454, intron 2 of 16)"	CpG	110720	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr17.43255895.-	chr17	43255895	43255896	-	0	NA	Intergenic	AluY|SINE|Alu	-17631	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr9.27541454.+	chr9	27541454	27541455	+	0	NA	Intergenic	AluY|SINE|Alu	-11604	NM_024761	79817	Hs.733701	NM_024761	ENSG00000120162	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
chr7.532184.-	chr7	532184	532185	-	0	NA	Intergenic	Intergenic	-27297	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr19.49061662.+	chr19	49061662	49061663	+	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	6233	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr3.195929662.+	chr3	195929662	195929663	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	L2|LINE|L2	8638	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr2.25757651.-	chr2	25757651	25757652	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-115440	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr6.57322570.+	chr6	57322570	57322571	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140148	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chrX.137770401.+	chrX	137770401	137770402	+	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	-20447	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr7.1542270.+	chr7	1542270	1542271	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1748	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr11.1266550.-	chr11	1266550	1266551	-	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	-22255	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr15.41613143.-	chr15	41613143	41613144	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11676	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr12.116724237.-	chr12	116724237	116724238	-	0	NA	Intergenic	AluY|SINE|Alu	9246	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr7.1474531.-	chr7	1474531	1474532	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24578	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr17.78994843.-	chr17	78994843	78994844	-	0	NA	Intergenic	Intergenic	-13676	NR_026857	440465	Hs.448889	NM_001004336	ENSG00000226137	BAIAP2-AS1	-	BAIAP2 antisense RNA 1 (head to head)	miscRNA
chr8.19626690.-	chr8	19626690	19626691	-	0	NA	Intergenic	AluSx1|SINE|Alu	48228	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr12.118556938.-	chr12	118556938	118556939	-	0	NA	Intergenic	AluSx|SINE|Alu	15128	NM_019086	54621	Hs.187624	NM_019086	ENSG00000176834	VSIG10	-	V-set and immunoglobulin domain containing 10	protein-coding
chr22.46565264.-	chr22	46565264	46565265	-	0	NA	"intron (NM_001001928, intron 2 of 7)"	AluY|SINE|Alu	-18765	NM_001001928	5465	Hs.710044	NM_001001928	ENSG00000186951	PPARA	NR1C1|PPAR|PPARalpha|hPPAR	peroxisome proliferator-activated receptor alpha	protein-coding
chr11.5623428.-	chr11	5623428	5623429	-	0	NA	"intron (NM_001198645, intron 1 of 5)"	AluY|SINE|Alu	-5563	NM_001003818	117854	Hs.729048	NM_001003818	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
chr4.974884.-	chr4	974884	974885	-	0	NA	"intron (NM_134425, intron 2 of 2)"	HERVL74-int|LTR|ERVL	5901	NM_000203	3425	Hs.89560	NM_000203	ENSG00000127415	IDUA	IDA|MPS1	"iduronidase, alpha-L-"	protein-coding
chr2.90482942.-	chr2	90482942	90482943	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365033	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr7.45775944.+	chr7	45775944	45775945	+	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	32673	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr3.102973974.+	chr3	102973974	102973975	+	0	NA	Intergenic	SVA_D|Other|Other	820115	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr12.133328244.-	chr12	133328244	133328245	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10207	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr14.57275890.+	chr14	57275890	57275891	+	0	NA	"intron (NM_001270524, intron 1 of 3)"	CpG	1304	NM_001270523	5015	Hs.741558	NM_001270523	ENSG00000165588	OTX2	CPHD6|MCOPS5	orthodenticle homeobox 2	protein-coding
chr5.54539379.+	chr5	54539379	54539380	+	0	NA	Intergenic	AluSc|SINE|Alu	-9871	NM_021147	10309	Hs.3041	NM_001024592	ENSG00000152669	CCNO	CCNU|UDG2	cyclin O	protein-coding
chr16.4537725.+	chr16	4537725	4537726	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8134	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr7.56109514.-	chr7	56109514	56109515	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9754	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr19.13497344.+	chr19	13497344	13497345	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119930	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr6.2233008.-	chr6	2233008	2233009	-	0	NA	"intron (NM_001500, intron 1 of 10)"	"intron (NM_001500, intron 1 of 10)"	-12860	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr7.63582824.-	chr7	63582824	63582825	-	0	NA	Intergenic	AluJo|SINE|Alu	-77003	NM_001159522	442319	Hs.640774	NM_001159522	ENSG00000257482	ZNF727	-	zinc finger protein 727	protein-coding
chr1.8021833.-	chr1	8021833	8021834	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-119	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr19.51165132.+	chr19	51165132	51165133	+	0	NA	TTS (NM_016148)	TTS (NM_016148)	12430	NM_001195076	342918	Hs.531650	NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
chr8.141559333.-	chr8	141559333	141559334	-	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	-37252	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chrX.39680335.-	chrX	39680335	39680336	-	0	NA	Intergenic	CpG	-276384	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr17.78977997.+	chr17	78977997	78977998	+	0	NA	Intergenic	CpG	12356	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr11.133788091.+	chr11	133788091	133788092	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16456	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr14.64194135.-	chr14	64194135	64194136	-	0	NA	"exon (NM_030791, exon 1 of 3)"	"exon (NM_030791, exon 1 of 3)"	-621	NM_030791	81537	Hs.24678	NM_030791	ENSG00000126821	SGPP1	SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
chr12.66636866.-	chr12	66636866	66636867	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	"intron (NM_001142523, intron 7 of 10)"	-53888	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr4.42658251.-	chr4	42658251	42658252	-	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	-871	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chrM.791.+	chrM	791	792	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr7.1200500.+	chr7	1200500	1200501	+	0	NA	promoter-TSS (NM_182491)	promoter-TSS (NM_182491)	-645	NM_182491	90637	Hs.648111	NM_182491	ENSG00000178381	ZFAND2A	AIRAP	"zinc finger, AN1-type domain 2A"	protein-coding
chr17.27069963.+	chr17	27069963	27069964	+	0	NA	TTS (NM_178170)	TTS (NM_178170)	-1060	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr19.41868050.-	chr19	41868050	41868051	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1821	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr15.83365832.-	chr15	83365832	83365833	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12803	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr18.19630093.+	chr18	19630093	19630094	+	0	NA	Intergenic	AluY|SINE|Alu	-119311	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr9.15428411.+	chr9	15428411	15428412	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5629	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr6.138984650.+	chr6	138984650	138984651	+	0	NA	Intergenic	AluSp|SINE|Alu	-28155	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr5.179581189.-	chr5	179581189	179581190	-	0	NA	"intron (NM_175062, intron 1 of 13)"	"intron (NM_175062, intron 1 of 13)"	-54941	NM_175062	255426	Hs.190559	NM_001031799	ENSG00000146090	RASGEF1C	-	"RasGEF domain family, member 1C"	protein-coding
chr13.52439640.+	chr13	52439640	52439641	+	0	NA	"exon (NM_031290, exon 2 of 2)"	"exon (NM_031290, exon 2 of 2)"	3523	NM_031290	83446	Hs.120573	NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding
chr17.4697284.-	chr17	4697284	4697285	-	0	NA	Intergenic	AluY|SINE|Alu	2155	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr12.106533458.-	chr12	106533458	106533459	-	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	-353	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr6.10415307.+	chr6	10415307	10415308	+	0	NA	"5' UTR (NM_003220, exon 1 of 7)"	"5' UTR (NM_003220, exon 1 of 7)"	163	NM_003220	7020	Hs.519880	NM_001032280	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	protein-coding
chr7.155191798.-	chr7	155191798	155191799	-	0	NA	Intergenic	Intergenic	59026	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr12.66636780.-	chr12	66636780	66636781	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53802	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr16.31449002.+	chr16	31449002	31449003	+	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	5346	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chrX.19498820.+	chrX	19498820	19498821	+	0	NA	"intron (NM_001001671, intron 3 of 28)"	AluSx1|SINE|Alu	34559	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr16.1836596.+	chr16	1836596	1836597	+	0	NA	"exon (NM_012225, exon 2 of 7)"	"exon (NM_012225, exon 2 of 7)"	3663	NM_012225	10101	Hs.256549	NM_012225	ENSG00000095906	NUBP2	CFD1|NUBP1	nucleotide binding protein 2	protein-coding
chr5.74566606.+	chr5	74566606	74566607	+	0	NA	Intergenic	SVA_F|Other|Other	-33903	NM_001164443	256006	Hs.482533	NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
chr5.1466230.+	chr5	1466230	1466231	+	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	-20687	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr7.95178700.-	chr7	95178700	95178701	-	0	NA	Intergenic	AluY|SINE|Alu	-47225	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr22.44600842.+	chr22	44600842	44600843	+	0	NA	"intron (NM_022141, intron 12 of 13)"	"intron (NM_022141, intron 12 of 13)"	23585	NM_001137606	64098	Hs.666944	NM_001137606	ENSG00000138964	PARVG	-	"parvin, gamma"	protein-coding
chr21.47838750.-	chr21	47838750	47838751	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40112	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr1.1136584.-	chr1	1136584	1136585	-	0	NA	Intergenic	CpG	-5505	NM_004195	8784	Hs.212680	NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|GITR|GITR-D	"tumor necrosis factor receptor superfamily, member 18"	protein-coding
chr17.43225020.-	chr17	43225020	43225021	-	0	NA	"5' UTR (NM_006460, exon 1 of 1)"	"5' UTR (NM_006460, exon 1 of 1)"	-336	NM_006460	10614	Hs.741758	NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	hexamethylene bis-acetamide inducible 1	protein-coding
chr2.241622527.-	chr2	241622527	241622528	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	210	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr15.83365837.-	chr15	83365837	83365838	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12798	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr1.168105253.-	chr1	168105253	168105254	-	0	NA	"5' UTR (NM_001267612, exon 1 of 6)"	"5' UTR (NM_001267612, exon 1 of 6)"	-421	NM_001267612	23432	Hs.271809	NM_007369		GPR161	RE2	G protein-coupled receptor 161	protein-coding
chr19.23432203.+	chr19	23432203	23432204	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx|SINE|Alu	969	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr12.120962164.-	chr12	120962164	120962165	-	0	NA	"intron (NM_032314, intron 1 of 6)"	AluY|SINE|Alu	-4800	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr3.49047722.-	chr3	49047722	49047723	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3085	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr5.36142989.-	chr5	36142989	36142990	-	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	-5101	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr5.114712358.-	chr5	114712358	114712359	-	0	NA	Intergenic	MIRb|SINE|MIR	79900	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr1.10727913.+	chr1	10727913	10727914	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128820	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chrX.54371337.-	chrX	54371337	54371338	-	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	-13101	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr7.2716318.-	chr7	2716318	2716319	-	0	NA	Intergenic	Intergenic	2845	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chrX.25544582.-	chrX	25544582	25544583	-	0	NA	Intergenic	AluSc5|SINE|Alu	510517	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
chr9.11197043.+	chr9	11197043	11197044	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584320	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr22.22550487.+	chr22	22550487	22550488	+	0	NA	Intergenic	Intergenic	-48713	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr6.42248121.-	chr6	42248121	42248122	-	0	NA	"intron (NM_033502, intron 4 of 17)"	"intron (NM_033502, intron 4 of 17)"	62488	NM_018141	55173	Hs.669022	NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122	mitochondrial ribosomal protein S10	protein-coding
chr16.11953921.+	chr16	11953921	11953922	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8479	NM_015659	26156	Hs.401842	NM_015659	ENSG00000171490	RSL1D1	CSIG|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
chr10.104209697.-	chr10	104209697	104209698	-	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	-123	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr6.76458922.-	chr6	76458922	76458923	-	0	NA	promoter-TSS (NM_004999)	promoter-TSS (NM_004999)	-13	NM_004999	4646	Hs.149387	NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
chr6.170055349.+	chr6	170055349	170055350	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46810	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr1.65532944.-	chr1	65532944	65532945	-	0	NA	Intergenic	CpG	8753	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr2.62135501.-	chr2	62135501	62135502	-	0	NA	"intron (NM_152516, intron 1 of 2)"	AluSc|SINE|Alu	-2698	NM_152516	150684	Hs.468702	NM_152516		COMMD1	C2orf5|MURR1	copper metabolism (Murr1) domain containing 1	protein-coding
chr3.29288103.-	chr3	29288103	29288104	-	0	NA	Intergenic	AluY|SINE|Alu	34700	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr11.4258920.+	chr11	4258920	4258921	+	0	NA	Intergenic	SVA_B|Other|Other	50538	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr17.59487105.-	chr17	59487105	59487106	-	0	NA	TTS (NM_005994)	TTS (NM_005994)	2007	NM_203425	388407	Hs.434459	NM_203425	ENSG00000187013	C17orf82	-	chromosome 17 open reading frame 82	protein-coding
chr7.53587019.-	chr7	53587019	53587020	-	0	NA	Intergenic	AluY|SINE|Alu	-292605	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr17.74707062.+	chr17	74707062	74707063	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-6	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr16.75112455.+	chr16	75112455	75112456	+	0	NA	"intron (NM_032268, intron 1 of 4)"	AluSx|SINE|Alu	38215	NM_194436	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
chr17.79455119.+	chr17	79455119	79455120	+	0	NA	Intergenic	CpG	24773	NR_037688	71	Hs.706229	NM_001199954	ENSG00000184009	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26	"actin, gamma 1"	protein-coding
chr8.1899228.-	chr8	1899228	1899229	-	0	NA	"intron (NM_014629, intron 27 of 28)"	"intron (NM_014629, intron 27 of 28)"	22816	NM_014867	9920	Hs.5333	NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB (POZ) domain containing 11	protein-coding
chr13.100353714.+	chr13	100353714	100353715	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluY|SINE|Alu	58401	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr20.52741098.+	chr20	52741098	52741099	+	0	NA	Intergenic	AluSx1|SINE|Alu	49418	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr14.64976411.-	chr14	64976411	64976412	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5119	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chr6.4780652.+	chr6	4780652	4780653	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3972	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr20.60952048.-	chr20	60952048	60952049	-	0	NA	Intergenic	MER20|DNA|hAT-Charlie	9680	NM_005560	3911	Hs.473256	NM_005560	ENSG00000130702	LAMA5	-	"laminin, alpha 5"	protein-coding
chr2.224599676.-	chr2	224599676	224599677	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102643	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr4.1626800.-	chr4	1626800	1626801	-	0	NA	Intergenic	CpG	-58918	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr4.55015823.+	chr4	55015823	55015824	+	0	NA	Intergenic	LTR12C|LTR|ERV1	49575	NM_133267	170825	Hs.371899	NM_133267		GSX2	GSH2	GS homeobox 2	protein-coding
chr11.64391611.+	chr11	64391611	64391612	+	0	NA	"intron (NM_138732, intron 17 of 19)"	"intron (NM_138732, intron 17 of 19)"	19176	NM_138734	9379	Hs.372938	NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
chrX.68956146.+	chrX	68956146	68956147	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSp|SINE|Alu	120235	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr3.47744674.-	chr3	47744674	47744675	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78731	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr1.146544213.-	chr1	146544213	146544214	-	0	NA	Intergenic	CpG	29614	NR_024442	728989	Hs.537068	NR_024442	ENSG00000227242	LOC728989	-	phosphodiesterase 4D interacting protein pseudogene	pseudo
chr2.208475925.+	chr2	208475925	208475926	+	0	NA	"3' UTR (NM_145280, exon 4 of 4)"	"3' UTR (NM_145280, exon 4 of 4)"	13771	NM_145280	151194	Hs.664764	NM_001127395	ENSG00000144401	METTL21A	FAM119A|HCA557b	methyltransferase like 21A	protein-coding
chr14.60336284.-	chr14	60336284	60336285	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1273	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr11.7603270.-	chr11	7603270	7603271	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15147	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr15.59685670.-	chr15	59685670	59685671	-	0	NA	Intergenic	AluSg4|SINE|Alu	20599	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
chr6.165205830.+	chr6	165205830	165205831	+	0	NA	Intergenic	AluYb8|SINE|Alu	517281	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr7.158462273.-	chr7	158462273	158462274	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35247	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr8.139075535.+	chr8	139075535	139075536	+	0	NA	Intergenic	AluSx|SINE|Alu	433530	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	"family with sequence similarity 135, member B"	protein-coding
chr17.6946773.-	chr17	6946773	6946774	-	0	NA	"exon (NM_153357, exon 1 of 4)"	"exon (NM_153357, exon 1 of 4)"	-469	NM_153357	162515	Hs.336564	NM_153357	ENSG00000174326	SLC16A11	MCT11	"solute carrier family 16, member 11 (monocarboxylic acid transporter 11)"	protein-coding
chr5.172640593.-	chr5	172640593	172640594	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-21722	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr5.159429707.+	chr5	159429707	159429708	+	0	NA	Intergenic	AluSz|SINE|Alu	-6473	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr1.42522907.-	chr1	42522907	42522908	-	0	NA	Intergenic	AluY|SINE|Alu	21311	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr6.168395057.+	chr6	168395057	168395058	+	0	NA	Intergenic	AluSx|SINE|Alu	-17438	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr6.170055336.-	chr6	170055336	170055337	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46823	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr13.100934744.-	chr13	100934744	100934745	-	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	-193475	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr4.26862514.-	chr4	26862514	26862515	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-201	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr11.6651829.-	chr11	6651829	6651830	-	0	NA	"exon (NM_003737, exon 10 of 21)"	"exon (NM_003737, exon 10 of 21)"	11137	NM_000391	1200	Hs.523454	NM_000391	ENSG00000166340	TPP1	CLN2|LPIC|TPP-1	tripeptidyl peptidase I	protein-coding
chr4.166248512.+	chr4	166248512	166248513	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-306	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr17.57868949.+	chr17	57868949	57868950	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49678	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr11.64628374.+	chr11	64628374	64628375	+	0	NA	"intron (NM_006795, intron 2 of 4)"	AluSg7|SINE|Alu	-16333	NM_017525	55561	Hs.293590	NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding
chr17.74632758.+	chr17	74632758	74632759	+	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	7136	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr17.6371742.-	chr17	6371742	6371743	-	0	NA	"intron (NM_001165966, intron 12 of 18)"	"intron (NM_001165966, intron 12 of 18)"	-24007	NM_019013	54478	Hs.592116	NM_001195228	ENSG00000129195	FAM64A	CATS|RCS1	"family with sequence similarity 64, member A"	protein-coding
chr8.6644893.+	chr8	6644893	6644894	+	0	NA	Intergenic	AluY|SINE|Alu	-42132	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr4.148279082.+	chr4	148279082	148279083	+	0	NA	Intergenic	SVA_D|Other|Other	-122987	NM_001256283	1909	Hs.183713	NM_001166055	ENSG00000151617	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
chr3.122047960.-	chr3	122047960	122047961	-	0	NA	"intron (NM_005213, intron 1 of 2)"	AluY|SINE|Alu	-3949	NM_005213	1475	Hs.518198	NM_005213	ENSG00000121552	CSTA	AREI|STF1|STFA	cystatin A (stefin A)	protein-coding
chr19.44489465.+	chr19	44489465	44489466	+	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	1143	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr3.146187663.+	chr3	146187663	146187664	+	0	NA	promoter-TSS (NM_001199978)	promoter-TSS (NM_001199978)	-575	NM_001199978	57047	Hs.744414	NM_001199978	ENSG00000163746	PLSCR2	-	phospholipid scramblase 2	protein-coding
chr1.153918758.+	chr1	153918758	153918759	+	0	NA	"intron (NM_014856, intron 1 of 27)"	CpG	396	NM_014856	9909	Hs.632480	NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN/MADD domain containing 4B	protein-coding
chr17.46186992.-	chr17	46186992	46186993	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2045	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr15.31566365.-	chr15	31566365	31566366	-	0	NA	Intergenic	AluY|SINE|Alu	43315	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chr6.88118026.+	chr6	88118026	88118027	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	336	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr21.34099787.-	chr21	34099787	34099788	-	0	NA	promoter-TSS (NR_038880)	promoter-TSS (NR_038880)	-463	NM_001160302	8867	Hs.473632	NM_001160302	ENSG00000159082	SYNJ1	INPP5G	synaptojanin 1	protein-coding
chr12.54699001.-	chr12	54699001	54699002	-	0	NA	Intergenic	AluSx1|SINE|Alu	4180	NM_001261461	4778	Hs.75643	NM_001136023	ENSG00000123405	NFE2	NF-E2|p45	"nuclear factor (erythroid-derived 2), 45kDa"	protein-coding
chr19.10408186.-	chr19	10408186	10408187	-	0	NA	TTS (NM_003259)	TTS (NM_003259)	-7531	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr2.172379810.+	chr2	172379810	172379811	+	0	NA	"intron (NM_001127383, intron 1 of 2)"	CpG	944	NM_001127383	79901	Hs.221941	NM_001127383	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
chr12.112161419.-	chr12	112161419	112161420	-	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_F|Other|Other	-37562	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr13.45945068.-	chr13	45945068	45945069	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29588	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr2.21484573.-	chr2	21484573	21484574	-	0	NA	Intergenic	Intergenic	217628	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr22.24237317.+	chr22	24237317	24237318	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	752	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr1.54953554.+	chr1	54953554	54953555	+	0	NA	Intergenic	Intergenic	-60253	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr17.30414152.-	chr17	30414152	30414153	-	0	NA	Intergenic	FLAM_A|SINE|Alu	-46797	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
chr1.99544261.+	chr1	99544261	99544262	+	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	-73812	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr14.23791115.-	chr14	23791115	23791116	-	0	NA	"intron (NM_004643, intron 1 of 6)"	G-rich|Low_complexity|Low_complexity	-1718	NM_004643	8106	Hs.707712	NM_004643		PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	"poly(A) binding protein, nuclear 1"	protein-coding
chr17.8342577.-	chr17	8342577	8342578	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3407	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr5.137550370.+	chr5	137550370	137550371	+	0	NA	Intergenic	AluY|SINE|Alu	-1338	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr3.1144513.+	chr3	1144513	1144514	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9884	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr7.2671586.-	chr7	2671586	2671587	-	0	NA	promoter-TSS (NM_025250)	promoter-TSS (NM_025250)	17	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety homolog 3 (Drosophila)	protein-coding
chr22.24563093.+	chr22	24563093	24563094	+	0	NA	"exon (NM_001201429, exon 31 of 36)"	"exon (NM_001201429, exon 31 of 36)"	-14351	NM_019601	56241	Hs.131819	NM_019601	ENSG00000099994	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
chr13.111268073.-	chr13	111268073	111268074	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-142	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr2.65360269.+	chr2	65360269	65360270	+	0	NA	Intergenic	AluY|SINE|Alu	-2834	NM_015543	5861	Hs.310645	NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	"RAB1A, member RAS oncogene family"	protein-coding
chr8.142440423.-	chr8	142440423	142440424	-	0	NA	"intron (NM_032611, intron 4 of 4)"	CpG	-8416	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr12.132353189.+	chr12	132353189	132353190	+	0	NA	Intergenic	Intergenic	-26090	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chrX.53125863.-	chrX	53125863	53125864	-	0	NA	Intergenic	AluJb|SINE|Alu	-14321	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.39267313.+	chr2	39267313	39267314	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79828	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr12.132116745.-	chr12	132116745	132116746	-	0	NA	Intergenic	L1ME1|LINE|L1	78887	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr1.2043380.-	chr1	2043380	2043381	-	0	NA	"intron (NM_001033582, intron 1 of 14)"	"intron (NM_001033582, intron 1 of 14)"	-7225	NM_001033582	5590	Hs.496255	NM_001033581	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	"protein kinase C, zeta"	protein-coding
chr2.203320659.+	chr2	203320659	203320660	+	0	NA	"intron (NM_001204, intron 1 of 12)"	AluY|SINE|Alu	79609	NM_001204	659	Hs.471119	NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|PPH1|T-ALK	"bone morphogenetic protein receptor, type II (serine/threonine kinase)"	protein-coding
chr7.3124530.-	chr7	3124530	3124531	-	0	NA	Intergenic	AluSg7|SINE|Alu	41021	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr2.27588374.-	chr2	27588374	27588375	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4545	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr5.147055659.-	chr5	147055659	147055660	-	0	NA	"intron (NM_001270941, intron 1 of 21)"	AluY|SINE|Alu	-106752	NM_014790	9832	Hs.740461	NM_001270934		JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
chr7.66137275.+	chr7	66137275	66137276	+	0	NA	Intergenic	AluY|SINE|Alu	43407	NM_001167961	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr14.102970598.+	chr14	102970598	102970599	+	0	NA	Intergenic	Intergenic	5530	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr4.1358077.-	chr4	1358077	1358078	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16973	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr10.1034382.+	chr10	1034382	1034383	+	0	NA	promoter-TSS (NM_012341)	promoter-TSS (NM_012341)	33	NM_012341	23560	Hs.215766	NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
chrX.49126765.-	chrX	49126765	49126766	-	0	NA	"exon (NM_033215, exon 1 of 4)"	"exon (NM_033215, exon 1 of 4)"	-459	NM_001184745	89801	Hs.433652	NM_001184745	ENSG00000049769	PPP1R3F	HB2E|R3F	"protein phosphatase 1, regulatory subunit 3F"	protein-coding
chrX.54483056.-	chrX	54483056	54483057	-	0	NA	"intron (NM_004463, intron 8 of 17)"	"intron (NM_004463, intron 8 of 17)"	-16203	NM_058163	90121	Hs.522662	NM_058163	ENSG00000158526	TSR2	DT1P1A10|WGG1	"TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)"	protein-coding
chr8.22594700.+	chr8	22594700	22594701	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43885	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr19.22949539.+	chr19	22949539	22949540	+	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	17434	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr3.47865649.+	chr3	47865649	47865650	+	0	NA	"intron (NM_014966, intron 5 of 22)"	AluSx|SINE|Alu	21250	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|RETCOR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding
chr4.8913717.-	chr4	8913717	8913718	-	0	NA	Intergenic	Intergenic	37760	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr9.140343830.+	chr9	140343830	140343831	+	0	NA	"3' UTR (NM_001130969, exon 16 of 16)"	"3' UTR (NM_001130969, exon 16 of 16)"	-7929	NM_001033113	377841	Hs.512562	NM_001033113	ENSG00000188833	ENTPD8	GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
chr3.36494712.-	chr3	36494712	36494713	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72615	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr5.14460432.-	chr5	14460432	14460433	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121459	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr9.28773127.-	chr9	28773127	28773128	-	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	53824	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr7.124427236.+	chr7	124427236	124427237	+	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	3628	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chrX.122993633.-	chrX	122993633	122993634	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	29	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr7.1370394.-	chr7	1370394	1370395	-	0	NA	Intergenic	CpG	-97740	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr20.61402372.-	chr20	61402372	61402373	-	0	NA	Intergenic	Intergenic	-5836	NR_046224	100652730	Hs.254951	NR_046224		LINC00659	-	long intergenic non-protein coding RNA 659	miscRNA
chr3.9423718.-	chr3	9423718	9423719	-	0	NA	"intron (NM_015453, intron 7 of 9)"	AluY|SINE|Alu	-15456	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr1.10727951.+	chr1	10727951	10727952	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128782	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr5.1137808.-	chr5	1137808	1137809	-	0	NA	Intergenic	Intergenic	25636	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr10.134034470.-	chr10	134034470	134034471	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34056	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr19.1912346.+	chr19	1912346	1912347	+	0	NA	"exon (NM_138422, exon 2 of 2)"	"exon (NM_138422, exon 2 of 2)"	6973	NM_079834	113178	Hs.144980	NM_079834	ENSG00000227500	SCAMP4	SCAMP-4	secretory carrier membrane protein 4	protein-coding
chr9.36859966.+	chr9	36859966	36859967	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4339	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr1.236252212.+	chr1	236252212	236252213	+	0	NA	Intergenic	AluY|SINE|Alu	-23731	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr3.22843172.-	chr3	22843172	22843173	-	0	NA	Intergenic	L1PA2|LINE|L1	401612	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr9.123743131.+	chr9	123743131	123743132	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51680	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr14.23233420.+	chr14	23233420	23233421	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2311	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr19.7752415.-	chr19	7752415	7752416	-	0	NA	Intergenic	MIR|SINE|MIR	-6708	NM_001042462	126003	Hs.432413	NM_001042461	ENSG00000181029	TRAPPC5	TRS31	trafficking protein particle complex 5	protein-coding
chr1.53792625.+	chr1	53792625	53792626	+	0	NA	"exon (NM_017522, exon 2 of 16)"	"exon (NM_017522, exon 2 of 16)"	1196	NM_004631	7804	Hs.280387	NM_001018054		LRP8	APOER2|HSZ75190|LRP-8|MCI1	"low density lipoprotein receptor-related protein 8, apolipoprotein e receptor"	protein-coding
chr17.73439484.-	chr17	73439484	73439485	-	0	NA	Intergenic	AluSg4|SINE|Alu	13180	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr17.18575636.+	chr17	18575636	18575637	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	858	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr12.111714639.-	chr12	111714639	111714640	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92286	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr19.53096864.-	chr19	53096864	53096865	-	0	NA	Intergenic	SVA_D|Other|Other	3073	NR_023311	7696	Hs.373648	NM_003438		ZNF137P	ZNF137|pHZ-30	"zinc finger protein 137, pseudogene"	pseudo
chr19.22949433.-	chr19	22949433	22949434	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSg|SINE|Alu	-17540	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr1.16972921.+	chr1	16972921	16972922	+	0	NA	"non-coding (NR_027504, exon 2 of 14)"	"non-coding (NR_027504, exon 2 of 14)"	852	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr11.125673028.+	chr11	125673028	125673029	+	0	NA	Intergenic	L1M2|LINE|L1	15022	NM_001129883	100169851	Hs.131278	NM_001129883	ENSG00000236027	PATE3	HEL-127|PATE-DJ	prostate and testis expressed 3	protein-coding
chr2.71562041.+	chr2	71562041	71562042	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3156	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chrX.53111613.-	chrX	53111613	53111614	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-71	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.14591089.+	chr19	14591089	14591090	+	0	NA	"intron (NM_202469, intron 4 of 6)"	CpG	-4915	NM_000955	5731	Hs.159360	NM_000955	ENSG00000160951	PTGER1	EP1	"prostaglandin E receptor 1 (subtype EP1), 42kDa"	protein-coding
chr2.101245835.+	chr2	101245835	101245836	+	0	NA	Intergenic	Intergenic	66417	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr7.5275433.+	chr7	5275433	5275434	+	0	NA	Intergenic	AluSg|SINE|Alu	21533	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr10.7616573.+	chr10	7616573	7616574	+	0	NA	"intron (NM_001001851, intron 10 of 11)"	AluYk4|SINE|Alu	45063	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr11.128107155.-	chr11	128107155	128107156	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-285050	NM_005238	2113	Hs.369438	NM_001143820	ENSG00000134954	ETS1	ETS-1|EWSR2	v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	protein-coding
chrX.19461237.+	chrX	19461237	19461238	+	0	NA	"intron (NM_001001671, intron 6 of 28)"	AluSz|SINE|Alu	72142	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr3.188566628.-	chr3	188566628	188566629	-	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	323135	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr9.6582750.-	chr9	6582750	6582751	-	0	NA	"intron (NM_000170, intron 15 of 24)"	AluY|SINE|Alu	-62942	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr5.11072958.-	chr5	11072958	11072959	-	0	NA	"intron (NM_001332, intron 16 of 21)"	"intron (NM_001332, intron 16 of 21)"	311571	NM_004394	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death-associated protein	protein-coding
chr2.70416472.-	chr2	70416472	70416473	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1679	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr16.1151811.-	chr16	1151811	1151812	-	0	NA	Intergenic	Intergenic	5567	NM_207419	390664	Hs.527853	NM_207419		C1QTNF8	CTRP8|UNQ5829	C1q and tumor necrosis factor related protein 8	protein-coding
chr17.79034740.-	chr17	79034740	79034741	-	0	NA	"intron (NM_017451, intron 3 of 14)"	AluSx|SINE|Alu	-25793	NM_006340	10458	Hs.128316	NM_001144888	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1-associated protein 2	protein-coding
chr2.149395128.+	chr2	149395128	149395129	+	0	NA	Intergenic	AluY|SINE|Alu	-7432	NM_015630	26122	Hs.23270	NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chr2.1896144.+	chr2	1896144	1896145	+	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	-147853	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr11.86267747.-	chr11	86267747	86267748	-	0	NA	"intron (NM_001014811, intron 2 of 13)"	"intron (NM_001014811, intron 2 of 13)"	-115493	NM_001014811	10873	Hs.199743	NM_001014811	ENSG00000151376	ME3	NADP-ME	"malic enzyme 3, NADP(+)-dependent, mitochondrial"	protein-coding
chr17.74563293.+	chr17	74563293	74563294	+	0	NA	"intron (NM_006456, intron 8 of 8)"	"intron (NM_006456, intron 8 of 8)"	5578	NR_004395	677848		NR_004395	ENSG00000201838	SNORD1A	R38A|snR38A	"small nucleolar RNA, C/D box 1A"	snoRNA
chr2.176994771.-	chr2	176994771	176994772	-	0	NA	"5' UTR (NM_001199746, exon 1 of 2)"	"5' UTR (NM_001199746, exon 1 of 2)"	-303	NM_019558	3234	Hs.301963	NM_001199746	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
chr19.4158978.+	chr19	4158978	4158979	+	0	NA	"intron (NM_032607, intron 3 of 9)"	"intron (NM_032607, intron 3 of 9)"	5380	NM_032607	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr2.192374794.+	chr2	192374794	192374795	+	0	NA	Intergenic	AluY|SINE|Alu	-168004	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr20.61610463.+	chr20	61610463	61610464	+	0	NA	Intergenic	Intergenic	26464	NM_022082	63910	Hs.512686	NM_022082	ENSG00000101194	SLC17A9	C20orf59	"solute carrier family 17, member 9"	protein-coding
chr9.12352798.+	chr9	12352798	12352799	+	0	NA	Intergenic	AluY|SINE|Alu	-340588	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr1.109995457.+	chr1	109995457	109995458	+	0	NA	Intergenic	AluY|SINE|Alu	-13643	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr2.52338186.-	chr2	52338186	52338187	-	0	NA	Intergenic	AluY|SINE|Alu	1078512	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr8.104115239.+	chr8	104115239	104115240	+	0	NA	Intergenic	AluSp|SINE|Alu	-37682	NM_024812	79870	Hs.533446	NM_001024372	ENSG00000164929	BAALC	-	"brain and acute leukemia, cytoplasmic"	protein-coding
chr16.81040482.+	chr16	81040482	81040483	+	0	NA	promoter-TSS (NM_020188)	promoter-TSS (NM_020188)	20	NM_020188	56942	Hs.55028	NM_020188		CMC2	2310061C15Rik|C16orf61	COX assembly mitochondrial protein 2 homolog (S. cerevisiae)	protein-coding
chr4.8913740.-	chr4	8913740	8913741	-	0	NA	Intergenic	Intergenic	37737	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr5.159429733.+	chr5	159429733	159429734	+	0	NA	Intergenic	AluSz|SINE|Alu	-6447	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr12.49212628.-	chr12	49212628	49212629	-	0	NA	"5' UTR (NM_001206915, exon 1 of 12)"	"5' UTR (NM_001206915, exon 1 of 12)"	-374	NM_001206915	784	Hs.737291	NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	"calcium channel, voltage-dependent, beta 3 subunit"	protein-coding
chr8.98766120.+	chr8	98766120	98766121	+	0	NA	Intergenic	AluSz|SINE|Alu	-21689	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr8.623618.-	chr8	623618	623619	-	0	NA	"exon (NM_207332, exon 4 of 6)"	"exon (NM_207332, exon 4 of 6)"	-57608	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr19.6337909.-	chr19	6337909	6337910	-	0	NA	Intergenic	AluY|SINE|Alu	4269	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr22.51142894.+	chr22	51142894	51142895	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29824	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr12.5736483.+	chr12	5736483	5736484	+	0	NA	"intron (NM_020373, intron 17 of 25)"	"intron (NM_020373, intron 17 of 25)"	133185	NM_002527	4908	Hs.99171	NM_001102654	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT3	neurotrophin 3	protein-coding
chr22.41715334.-	chr22	41715334	41715335	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17827	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr2.120964321.-	chr2	120964321	120964322	-	0	NA	Intergenic	Intergenic	-16663	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr12.96314638.-	chr12	96314638	96314639	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21790	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr1.40953680.+	chr1	40953680	40953681	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10378	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr8.67454359.+	chr8	67454359	67454360	+	0	NA	Intergenic	Intergenic	48868	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr2.71562018.+	chr2	71562018	71562019	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3133	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr6.8388469.-	chr6	8388469	8388470	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47325	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr16.58288662.+	chr16	58288662	58288663	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4822	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr10.88702381.-	chr10	88702381	88702382	-	0	NA	"exon (NM_024756, exon 6 of 7)"	"exon (NM_024756, exon 6 of 7)"	-15044	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chrX.23801533.-	chrX	23801533	23801534	-	0	NA	"exon (NM_002970, exon 1 of 6)"	"exon (NM_002970, exon 1 of 6)"	-258	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr1.121485053.-	chr1	121485053	121485054	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-224143	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr10.18575196.-	chr10	18575196	18575197	-	0	NA	"intron (NM_000724, intron 1 of 12)"	AluYk4|SINE|Alu	-25612	NM_000724	783	Hs.59093	NM_000724	ENSG00000165995	CACNB2	CACNLB2|CAVB2|MYSB	"calcium channel, voltage-dependent, beta 2 subunit"	protein-coding
chr16.632121.+	chr16	632121	632122	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7236	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr7.142960552.-	chr7	142960552	142960553	-	0	NA	promoter-TSS (NM_015917)	promoter-TSS (NM_015917)	-30	NM_015917	373156	Hs.390667	NM_001143679	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
chr6.45365016.-	chr6	45365016	45365017	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19228	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr14.23438221.-	chr14	23438221	23438222	-	0	NA	Intergenic	AluSx1|SINE|Alu	-8211	NM_198086	84962	Hs.655832	NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
chr16.29422160.+	chr16	29422160	29422161	+	0	NA	Intergenic	AluSx|SINE|Alu	-38506	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr1.235668600.+	chr1	235668600	235668601	+	0	NA	promoter-TSS (NM_152490)	promoter-TSS (NM_152490)	-819	NM_152490	148789	Hs.743413	NM_001277155		B3GALNT2	B3GalNAc-T2	"beta-1,3-N-acetylgalactosaminyltransferase 2"	protein-coding
chr11.134207994.+	chr11	134207994	134207995	+	0	NA	"intron (NM_138342, intron 1 of 19)"	"intron (NM_138342, intron 1 of 19)"	6226	NM_138342	89944	Hs.436178	NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	"galactosidase, beta 1-like 2"	protein-coding
chr2.121010179.+	chr2	121010179	121010180	+	0	NA	promoter-TSS (NM_002881)	promoter-TSS (NM_002881)	-235	NM_002881	5899	Hs.469820	NM_002881	ENSG00000144118	RALB	-	v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein)	protein-coding
chr14.105292266.+	chr14	105292266	105292267	+	0	NA	Intergenic	L2|LINE|L2	4728	NR_024396	196872	Hs.352220	NR_024396	ENSG00000258701	LINC00638	-	long intergenic non-protein coding RNA 638	miscRNA
chr10.135192242.+	chr10	135192242	135192243	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-499	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr3.22987501.+	chr3	22987501	22987502	+	0	NA	Intergenic	AluYk4|SINE|Alu	-257283	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr9.115480382.+	chr9	115480382	115480383	+	0	NA	promoter-TSS (NM_021218)	promoter-TSS (NM_021218)	5	NM_021218	58493	Hs.658575	NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
chr5.125759090.-	chr5	125759090	125759091	-	0	NA	"5' UTR (NM_023927, exon 1 of 14)"	"5' UTR (NM_023927, exon 1 of 14)"	-221	NM_023927	65983	Hs.363558	NM_001146319	ENSG00000155324	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
chr20.61021397.+	chr20	61021397	61021398	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-18768	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr3.85080826.+	chr3	85080826	85080827	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72693	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr7.5570081.-	chr7	5570081	5570082	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-151	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr16.29328244.+	chr16	29328244	29328245	+	0	NA	"intron (NR_002939, intron 2 of 8)"	"intron (NR_002939, intron 2 of 8)"	14636	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr19.50614538.-	chr19	50614538	50614539	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1207	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr17.64230391.-	chr17	64230391	64230392	-	0	NA	Intergenic	AluYc|SINE|Alu	4835	NM_000042	350	Hs.445358	NM_000042	ENSG00000091583	APOH	B2G1|B2GP1|BG	apolipoprotein H (beta-2-glycoprotein I)	protein-coding
chr5.86315082.+	chr5	86315082	86315083	+	0	NA	Intergenic	AluYc3|SINE|Alu	95689	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	miscRNA
chr12.127210856.+	chr12	127210856	127210857	+	0	NA	Intergenic	CpG	-10697	NR_038256	100507206	Hs.662298	NR_038256		LOC100507206	-	uncharacterized LOC100507206	miscRNA
chr19.21789927.-	chr19	21789927	21789928	-	0	NA	Intergenic	SVA_D|Other|Other	-101490	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr17.80642862.-	chr17	80642862	80642863	-	0	NA	"intron (NM_006822, intron 1 of 5)"	AluSq2|SINE|Alu	-13736	NM_006822	10966	Hs.484068	NM_006822		RAB40B	RAR|SEC4L	"RAB40B, member RAS oncogene family"	protein-coding
chr7.532562.-	chr7	532562	532563	-	0	NA	Intergenic	Intergenic	-26919	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr3.164119682.+	chr3	164119682	164119683	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676601	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr2.11305628.-	chr2	11305628	11305629	-	0	NA	"intron (NM_152391, intron 4 of 6)"	SVA_C|Other|Other	-10088	NM_152391	130814	Hs.274415	NM_152391	ENSG00000162976	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
chrX.107355784.-	chrX	107355784	107355785	-	0	NA	"intron (NM_052936, intron 1 of 12)"	AluY|SINE|Alu	-20885	NM_178270	115201	Hs.8763	NM_052936	ENSG00000101844	ATG4A	APG4A|AUTL2	"autophagy related 4A, cysteine peptidase"	protein-coding
chr19.40967811.-	chr19	40967811	40967812	-	0	NA	"intron (NM_000713, intron 1 of 4)"	L2c|LINE|L2	-3914	NM_000713	645	Hs.515785	NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|SDR43U1	biliverdin reductase B (flavin reductase (NADPH))	protein-coding
chr9.28773117.-	chr9	28773117	28773118	-	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	53814	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr12.92086071.+	chr12	92086071	92086072	+	0	NA	Intergenic	AluSx3|SINE|Alu	449418	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr11.9503841.+	chr11	9503841	9503842	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21329	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr7.102789741.-	chr7	102789741	102789742	-	0	NA	promoter-TSS (NM_001122838)	promoter-TSS (NM_001122838)	172	NM_001122838	222236	Hs.324271	NM_001122838	ENSG00000161048	NAPEPLD	FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
chr16.4537724.-	chr16	4537724	4537725	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8135	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr21.37627689.-	chr21	37627689	37627690	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64798	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chrX.21676446.-	chrX	21676446	21676447	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-2	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr1.80177687.-	chr1	80177687	80177688	-	0	NA	Intergenic	AluSx|SINE|Alu	705192	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr6.99291397.+	chr6	99291397	99291398	+	0	NA	Intergenic	CpG	8817	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
chr2.233364892.+	chr2	233364892	233364893	+	0	NA	Intergenic	Intergenic	-12360	NM_004826	9427	Hs.26880	NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme-like 1	protein-coding
chr9.113201959.-	chr9	113201959	113201960	-	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	101834	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chr22.49428545.-	chr22	49428545	49428546	-	0	NA	Intergenic	Intergenic	-165963	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr12.8777851.-	chr12	8777851	8777852	-	0	NA	Intergenic	Intergenic	12409	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr10.94857288.-	chr10	94857288	94857289	-	0	NA	Intergenic	Intergenic	-23641	NM_000783	1592	Hs.150595	NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	"cytochrome P450, family 26, subfamily A, polypeptide 1"	protein-coding
chr3.36421975.-	chr3	36421975	36421976	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	122	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr7.1286189.-	chr7	1286189	1286190	-	0	NA	Intergenic	CpG	-13535	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr1.246995901.-	chr1	246995901	246995902	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42982	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr5.168556389.+	chr5	168556389	168556390	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134309	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chrX.39864929.-	chrX	39864929	39864930	-	0	NA	Intergenic	CpG	-91790	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.49190994.+	chr19	49190994	49190995	+	0	NA	Intergenic	AluSp|SINE|Alu	-8234	NM_000511	2524	Hs.655052	NM_000511	ENSG00000176920	FUT2	B12QTL1|SE|SEC2|Se2|sej	fucosyltransferase 2 (secretor status included)	protein-coding
chr5.77549712.-	chr5	77549712	77549713	-	0	NA	"intron (NM_001271769, intron 2 of 26)"	AluY|SINE|Alu	-40867	NM_003664	8546	Hs.532091	NM_001271769	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	"adaptor-related protein complex 3, beta 1 subunit"	protein-coding
chr12.100804223.+	chr12	100804223	100804224	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53366	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr17.1533093.-	chr17	1533093	1533094	-	0	NA	promoter-TSS (NM_152346)	promoter-TSS (NM_152346)	963	NM_152346	124935	Hs.160550	NM_152346	ENSG00000167703	SLC43A2	LAT4	"solute carrier family 43, member 2"	protein-coding
chr12.93835615.+	chr12	93835615	93835616	+	0	NA	"intron (NM_003348, intron 1 of 3)"	CpG	411	NM_003348	7334	Hs.524630	NM_003348		UBE2N	UBC13|UbcH-ben|UbcH13	ubiquitin-conjugating enzyme E2N	protein-coding
chr2.170687916.+	chr2	170687916	170687917	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3898	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chrX.53123445.+	chrX	53123445	53123446	+	0	NA	Intergenic	CpG	11903	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr3.128194310.+	chr3	128194310	128194311	+	0	NA	Intergenic	Intergenic	-8219	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr16.84754623.-	chr16	84754623	84754624	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	-21068	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr19.10463949.-	chr19	10463949	10463950	-	0	NA	"intron (NM_003331, intron 21 of 24)"	CpG	13604	NM_002162	3385	Hs.654563	NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
chr5.114712367.+	chr5	114712367	114712368	+	0	NA	Intergenic	MIRb|SINE|MIR	-79909	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr2.208031299.-	chr2	208031299	208031300	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-281	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr11.118559923.-	chr11	118559923	118559924	-	0	NA	Intergenic	LTR12C|LTR|ERV1	9542	NM_007180	11181	Hs.129712	NM_007180	ENSG00000118094	TREH	TRE|TREA	trehalase (brush-border membrane glycoprotein)	protein-coding
chr2.10165500.+	chr2	10165500	10165501	+	0	NA	Intergenic	AluJo|SINE|Alu	-18182	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chrX.39680370.-	chrX	39680370	39680371	-	0	NA	Intergenic	CpG	-276349	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr5.122861565.+	chr5	122861565	122861566	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13772	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr15.100881433.-	chr15	100881433	100881434	-	0	NA	"exon (NM_139057, exon 2 of 22)"	"exon (NM_139057, exon 2 of 22)"	-750	NM_139057	170691	Hs.513200	NM_139057	ENSG00000140470	ADAMTS17	-	"ADAM metallopeptidase with thrombospondin type 1 motif, 17"	protein-coding
chr1.54775686.+	chr1	54775686	54775687	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96293	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr4.185174239.-	chr4	185174239	185174240	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35125	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr2.240402106.-	chr2	240402106	240402107	-	0	NA	Intergenic	Intergenic	79463	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr19.11189381.-	chr19	11189381	11189382	-	0	NA	Intergenic	AluSg|SINE|Alu	10657	NM_001195799	3949	Hs.713981	NM_000527	ENSG00000130164	LDLR	FH|FHC|LDLCQ2	low density lipoprotein receptor	protein-coding
chr1.47809011.-	chr1	47809011	47809012	-	0	NA	"intron (NM_001136140, intron 1 of 4)"	AluSg4|SINE|Alu	-9542	NR_046395	51727	Hs.731647	NM_001136140	ENSG00000162368	CMPK1	CMK|CMPK|UMK|UMP-CMPK|UMPK	"cytidine monophosphate (UMP-CMP) kinase 1, cytosolic"	protein-coding
chr16.53227228.-	chr16	53227228	53227229	-	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	-138283	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr18.77244867.+	chr18	77244867	77244868	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84541	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr2.213402676.+	chr2	213402676	213402677	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	676	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr20.39978481.+	chr20	39978481	39978482	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8921	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr16.1845165.-	chr16	1845165	1845166	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	256	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr12.132116761.+	chr12	132116761	132116762	+	0	NA	Intergenic	L1ME1|LINE|L1	-78871	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr16.70148613.+	chr16	70148613	70148614	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1084	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr10.132284887.+	chr10	132284887	132284888	+	0	NA	Intergenic	Intergenic	350248	NM_001199868	10539	Hs.42644	NM_001199868	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
chr19.589046.-	chr19	589046	589047	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	847	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr17.78977921.+	chr17	78977921	78977922	+	0	NA	Intergenic	CpG	12280	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr1.59041964.+	chr1	59041964	59041965	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1202	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr20.32914478.+	chr20	32914478	32914479	+	0	NA	Intergenic	AluSx|SINE|Alu	-14870	NM_001161766	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr6.122006939.+	chr6	122006939	122006940	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250194	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr2.107084283.+	chr2	107084283	107084284	+	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	518	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chr1.110881117.+	chr1	110881117	110881118	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	676	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chrX.9366108.+	chrX	9366108	9366109	+	0	NA	Intergenic	AluY|SINE|Alu	-65227	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr2.92172351.+	chr2	92172351	92172352	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43192	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr5.132082982.-	chr5	132082982	132082983	-	0	NA	promoter-TSS (NM_001039780)	promoter-TSS (NM_001039780)	155	NM_001039780	645121	Hs.714496	NM_001039780	ENSG00000205089	CCNI2	-	"cyclin I family, member 2"	protein-coding
chr1.5005153.+	chr1	5005153	5005154	+	0	NA	Intergenic	Intergenic	290048	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr7.156795151.+	chr7	156795151	156795152	+	0	NA	Intergenic	Intergenic	6978	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr3.26495147.-	chr3	26495147	26495148	-	0	NA	Intergenic	AluY|SINE|Alu	169153	NM_052953	116135	Hs.517868	NM_052953	ENSG00000179796	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
chr10.135104696.+	chr10	135104696	135104697	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14289	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr8.3825576.-	chr8	3825576	3825577	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026752	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr12.94946994.+	chr12	94946994	94946995	+	0	NA	Intergenic	AluSx|SINE|Alu	-8571	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr13.56400622.+	chr13	56400622	56400623	+	0	NA	Intergenic	AluY|SINE|Alu	652033	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr5.40801244.-	chr5	40801244	40801245	-	0	NA	Intergenic	SVA_E|Other|Other	2947	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr16.85267963.-	chr16	85267963	85267964	-	0	NA	Intergenic	MIR|SINE|MIR	48601	NR_038859	197196	Hs.679002	NR_038859	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	miscRNA
chr7.66480042.-	chr7	66480042	66480043	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18250	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr20.35737805.-	chr20	35737805	35737806	-	0	NA	"intron (NM_152503, intron 21 of 23)"	AluSq10|SINE|Alu	13395	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding
chr10.101380812.-	chr10	101380812	101380813	-	0	NA	promoter-TSS (NM_031212)	promoter-TSS (NM_031212)	591	NM_031212	81894	Hs.403790	NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L	"solute carrier family 25 (mitochondrial iron transporter), member 28"	protein-coding
chr22.43670603.-	chr22	43670603	43670604	-	0	NA	"intron (NM_173050, intron 4 of 21)"	"intron (NM_173050, intron 4 of 21)"	-68791	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr2.221058171.-	chr2	221058171	221058172	-	0	NA	Intergenic	MER52A|LTR|ERV1	286885	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr19.53979643.+	chr19	53979643	53979644	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8654	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr4.5981996.-	chr4	5981996	5981997	-	0	NA	Intergenic	Intergenic	56941	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	-	microRNA 378d-1	miscRNA
chr3.9429638.+	chr3	9429638	9429639	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9536	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr10.99162519.+	chr10	99162519	99162520	+	0	NA	Intergenic	AluSx|SINE|Alu	-1392	NM_001145114	23223	Hs.434251	NM_001145114	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding
chr9.138959047.-	chr9	138959047	138959048	-	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	-28084	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr17.55927358.+	chr17	55927358	55927359	+	0	NA	promoter-TSS (NM_016070)	promoter-TSS (NM_016070)	75	NM_016070	51649	Hs.5836	NM_016070		MRPS23	HSPC329|MRP-S23	mitochondrial ribosomal protein S23	protein-coding
chr17.73439508.+	chr17	73439508	73439509	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13156	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr8.27141312.+	chr8	27141312	27141313	+	0	NA	Intergenic	Intergenic	-25409	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr8.11312270.+	chr8	11312270	11312271	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	12006	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr8.125554043.+	chr8	125554043	125554044	+	0	NA	"intron (NM_005005, intron 1 of 3)"	AluSq|SINE|Alu	2700	NM_005005	4715	Hs.15977	NM_005005	ENSG00000147684	NDUFB9	B22|LYRM3|UQOR22	"NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa"	protein-coding
chr1.40052636.+	chr1	40052636	40052637	+	0	NA	Intergenic	AluSq|SINE|Alu	-10115	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr2.240371791.+	chr2	240371791	240371792	+	0	NA	Intergenic	SVA_D|Other|Other	-49148	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr3.146868673.-	chr3	146868673	146868674	-	0	NA	Intergenic	AluY|SINE|Alu	-241544	NR_033119	84107	Hs.739084	NM_001168378	ENSG00000174963	ZIC4	-	Zic family member 4	protein-coding
chr2.113642125.-	chr2	113642125	113642126	-	0	NA	Intergenic	AluJb|SINE|Alu	28423	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr9.135048760.+	chr9	135048760	135048761	+	0	NA	"intron (NM_032536, intron 2 of 7)"	"intron (NM_032536, intron 2 of 7)"	11426	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr9.8858139.+	chr9	8858139	8858140	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124193	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.95668714.-	chr8	95668714	95668715	-	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	-15350	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr8.96095128.+	chr8	96095128	96095129	+	0	NA	Intergenic	AluY|SINE|Alu	-9904	NR_037484	100500907		NR_037484	ENSG00000265256	MIR3150B	-	microRNA 3150b	miscRNA
chr11.122311483.-	chr11	122311483	122311484	-	0	NA	Intergenic	Intergenic	214915	NM_032873	84959	Hs.444075	NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
chr3.36494703.+	chr3	36494703	36494704	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72606	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr4.39399520.+	chr4	39399520	39399521	+	0	NA	Intergenic	AluSx|SINE|Alu	-8953	NM_175737	152831	Hs.90756	NM_175737	ENSG00000134962	KLB	BKL	klotho beta	protein-coding
chr2.31691888.+	chr2	31691888	31691889	+	0	NA	Intergenic	AluY|SINE|Alu	-54277	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr21.33279847.+	chr21	33279847	33279848	+	0	NA	"intron (NM_014586, intron 1 of 10)"	"intron (NM_014586, intron 1 of 10)"	34219	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr14.70001402.+	chr14	70001402	70001403	+	0	NA	Intergenic	AluY|SINE|Alu	40198	NM_001271507	56936	Hs.458319	NM_001271507		CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
chr3.141902863.-	chr3	141902863	141902864	-	0	NA	"intron (NM_001039547, intron 9 of 15)"	AluY|SINE|Alu	34477	NM_001178138	7029	Hs.379018	NM_001178138	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2 (E2F dimerization partner 2)	protein-coding
chr1.8418618.-	chr1	8418618	8418619	-	0	NA	"exon (NM_012102, exon 21 of 24)"	"exon (NM_012102, exon 21 of 24)"	-34228	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	"solute carrier family 45, member 1"	protein-coding
chr2.111367743.+	chr2	111367743	111367744	+	0	NA	Intergenic	Intergenic	-31434	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr17.8059774.+	chr17	8059774	8059775	+	0	NA	Intergenic	CpG	-4021	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chrM.6556.+	chrM	6556	6557	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr10.21183571.-	chr10	21183571	21183572	-	0	NA	"intron (NM_006393, intron 2 of 27)"	AluY|SINE|Alu	-2960	NM_006393	10529	Hs.5025	NM_001173484	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding
chr13.114001966.-	chr13	114001966	114001967	-	0	NA	"intron (NM_024719, intron 4 of 7)"	"intron (NM_024719, intron 4 of 7)"	-16497	NM_024719	79774	Hs.170904	NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
chrX.73387393.+	chrX	73387393	73387394	+	0	NA	"intron (NR_028379, intron 5 of 6)"	SVA_D|Other|Other	50903	NR_030398	693122		NR_030398	ENSG00000202566	MIR421	MIRN421|hsa-mir-421	microRNA 421	miscRNA
chr14.97125912.-	chr14	97125912	97125913	-	0	NA	Intergenic	AluSz|SINE|Alu	137772	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr12.26964580.-	chr12	26964580	26964581	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21551	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr8.70401944.-	chr8	70401944	70401945	-	0	NA	"intron (NM_001128204, intron 1 of 21)"	AluY|SINE|Alu	3084	NM_001128206	23213	Hs.409602	NM_001128204	ENSG00000137573	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
chr19.17434552.-	chr19	17434552	17434553	-	0	NA	TTS (NM_024050)	TTS (NM_024050)	-11086	NM_020959	57719	Hs.590990	NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
chr7.157451860.+	chr7	157451860	157451861	+	0	NA	"intron (NM_130842, intron 12 of 21)"	"intron (NM_130842, intron 12 of 21)"	-84746	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr19.21789916.+	chr19	21789916	21789917	+	0	NA	Intergenic	SVA_D|Other|Other	101479	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr10.120426975.-	chr10	120426975	120426976	-	0	NA	Intergenic	AluSp|SINE|Alu	71815	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr4.6946522.+	chr4	6946522	6946523	+	0	NA	"intron (NM_020773, intron 2 of 13)"	"intron (NM_020773, intron 2 of 13)"	35027	NM_020773	57533	Hs.518611	NM_001113361	ENSG00000132405	TBC1D14	-	"TBC1 domain family, member 14"	protein-coding
chr9.127540401.-	chr9	127540401	127540402	-	0	NA	"intron (NM_182487, intron 1 of 7)"	AluY|SINE|Alu	-964	NM_182487	169611	Hs.357004	NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin-like 2A	protein-coding
chr6.46742387.+	chr6	46742387	46742388	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18707	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr12.107215588.-	chr12	107215588	107215589	-	0	NA	"intron (NM_018157, intron 3 of 8)"	AluY|SINE|Alu	46979	NR_040246	100287944	Hs.742087	NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	miscRNA
chr17.810095.+	chr17	810095	810096	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42744	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr20.31118149.+	chr20	31118149	31118150	+	0	NA	"intron (NM_001256798, intron 1 of 10)"	AluY|SINE|Alu	-46764	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr8.2451988.+	chr8	2451988	2451989	+	0	NA	Intergenic	AluY|SINE|Alu	458830	NM_003970	9172	Hs.443683	NM_003970	ENSG00000036448	MYOM2	TTNAP	myomesin 2	protein-coding
chr2.242345570.-	chr2	242345570	242345571	-	0	NA	"intron (NM_014808, intron 4 of 26)"	AluY|SINE|Alu	-49906	NM_014808	9855	Hs.726316	NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	"FERM, RhoGEF and pleckstrin domain protein 2"	protein-coding
chrM.2674.-	chrM	2674	2675	-	0	NA	NA	LSU-rRNA_Hsa|rRNA|rRNA	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr13.111268303.-	chr13	111268303	111268304	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-372	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr2.90481150.+	chr2	90481150	90481151	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1366825	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr19.3810428.-	chr19	3810428	3810429	-	0	NA	"intron (NM_015174, intron 16 of 18)"	"intron (NM_015174, intron 16 of 18)"	8618	NM_002378	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chr9.139980835.+	chr9	139980835	139980836	+	0	NA	promoter-TSS (NM_016219)	promoter-TSS (NM_016219)	434	NR_027447	100289341	Hs.593896	NR_027447		LOC100289341	-	uncharacterized LOC100289341	miscRNA
chr16.88387045.+	chr16	88387045	88387046	+	0	NA	Intergenic	L2b|LINE|L2	-106834	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr7.2164658.+	chr7	2164658	2164659	+	0	NA	"intron (NM_001013836, intron 11 of 18)"	"intron (NM_001013836, intron 11 of 18)"	107925	NM_001013836	8379	Hs.654838	NM_001013836	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
chr12.31242126.+	chr12	31242126	31242127	+	0	NA	"intron (NM_004399, intron 7 of 25)"	"intron (NM_004399, intron 7 of 25)"	-15345	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	-	DDX11 antisense RNA 1	miscRNA
chrX.39680380.-	chrX	39680380	39680381	-	0	NA	Intergenic	CpG	-276339	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr2.43253968.+	chr2	43253968	43253969	+	0	NA	Intergenic	Intergenic	199777	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr9.107825440.+	chr9	107825440	107825441	+	0	NA	Intergenic	AluSc|SINE|Alu	-134913	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr11.67183083.+	chr11	67183083	67183084	+	0	NA	promoter-TSS (NM_001166222)	promoter-TSS (NM_001166222)	-66	NM_020811	57571	Hs.502982	NM_001166222	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
chr11.31560774.+	chr11	31560774	31560775	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29477	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr17.46186985.-	chr17	46186985	46186986	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2038	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr16.31932526.-	chr16	31932526	31932527	-	0	NA	Intergenic	AluY|SINE|Alu	-47447	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr13.111467832.-	chr13	111467832	111467833	-	0	NA	Intergenic	Intergenic	-54823	NR_027701	283487	Hs.245390	NM_178514		LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	miscRNA
chrX.153095485.+	chrX	153095485	153095486	+	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	518	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr11.119599529.-	chr11	119599529	119599530	-	0	NA	promoter-TSS (NM_203285)	promoter-TSS (NM_203285)	94	NM_203285	5818	Hs.334846	NM_002855	ENSG00000110400	PVRL1	CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
chr3.124468934.-	chr3	124468934	124468935	-	0	NA	TTS (NM_000373)	TTS (NM_000373)	-19721	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr9.131639089.+	chr9	131639089	131639090	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5265	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr2.191399186.-	chr2	191399186	191399187	-	0	NA	"intron (NM_001142645, intron 1 of 8)"	CpG	-282	NM_001142645	100131211	Hs.659824	NM_001142645		TMEM194B	-	transmembrane protein 194B	protein-coding
chr3.93689472.+	chr3	93689472	93689473	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3462	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chrX.43991624.-	chrX	43991624	43991625	-	0	NA	Intergenic	AluY|SINE|Alu	158703	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
chr17.4708671.+	chr17	4708671	4708672	+	0	NA	Intergenic	AluSp|SINE|Alu	-1725	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr14.30961033.+	chr14	30961033	30961034	+	0	NA	Intergenic	AluSz|SINE|Alu	-67296	NM_017769	55632	Hs.605081	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
chr1.1341937.-	chr1	1341937	1341938	-	0	NA	"intron (NM_017971, intron 2 of 3)"	"intron (NM_017971, intron 2 of 3)"	-756	NM_017971	55052	Hs.182698	NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20	mitochondrial ribosomal protein L20	protein-coding
chr6.4776045.-	chr6	4776045	4776046	-	0	NA	promoter-TSS (NM_004824)	promoter-TSS (NM_004824)	635	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr16.1807972.+	chr16	1807972	1807973	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13738	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chrX.7012504.+	chrX	7012504	7012505	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53397	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr20.60921085.+	chr20	60921085	60921086	+	0	NA	"intron (NM_005560, intron 10 of 79)"	"intron (NM_005560, intron 10 of 79)"	-13472	NR_039915	100616340		NR_039915		MIR4758	-	microRNA 4758	miscRNA
chr9.107727118.-	chr9	107727118	107727119	-	0	NA	Intergenic	AluYa5|SINE|Alu	36591	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr18.67270916.-	chr18	67270916	67270917	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202632	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr7.22705304.+	chr7	22705304	22705305	+	0	NA	Intergenic	CpG	-61462	NM_000600	3569	Hs.654458	NM_000600	ENSG00000136244	IL6	BSF2|HGF|HSF|IFNB2|IL-6	"interleukin 6 (interferon, beta 2)"	protein-coding
chr2.239047581.+	chr2	239047581	239047582	+	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	218	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chrX.73387394.+	chrX	73387394	73387395	+	0	NA	"intron (NR_028379, intron 5 of 6)"	SVA_D|Other|Other	50902	NR_030398	693122		NR_030398	ENSG00000202566	MIR421	MIRN421|hsa-mir-421	microRNA 421	miscRNA
chr10.134828160.+	chr10	134828160	134828161	+	0	NA	Intergenic	Intergenic	49122	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LOC399829	-	uncharacterized LOC399829	miscRNA
chr9.121440490.-	chr9	121440490	121440491	-	0	NA	Intergenic	SVA_B|Other|Other	-691249	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr2.44294808.+	chr2	44294808	44294809	+	0	NA	Intergenic	SVA_D|Other|Other	-71664	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr15.100080080.-	chr15	100080080	100080081	-	0	NA	Intergenic	AluSq2|SINE|Alu	26053	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr1.36787080.-	chr1	36787080	36787081	-	0	NA	TTS (NM_024676)	TTS (NM_024676)	-2675	NM_018166	55194	Hs.87016	NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B|RP11-268J15.2	eva-1 homolog B (C. elegans)	protein-coding
chr12.63016917.+	chr12	63016917	63016918	+	0	NA	Intergenic	AluY|SINE|Alu	19451	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	miscRNA
chr2.242500458.+	chr2	242500458	242500459	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1900	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr5.40801243.-	chr5	40801243	40801244	-	0	NA	Intergenic	SVA_E|Other|Other	2946	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr6.168395136.-	chr6	168395136	168395137	-	0	NA	Intergenic	AluSx|SINE|Alu	17517	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr5.21484676.+	chr5	21484676	21484677	+	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	25087	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr14.90564836.+	chr14	90564836	90564837	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSc8|SINE|Alu	36728	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr9.11197010.-	chr9	11197010	11197011	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584287	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr16.5016327.-	chr16	5016327	5016328	-	0	NA	"intron (NM_014692, intron 2 of 15)"	AluSx1|SINE|Alu	-8009	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14-like 5 (S. cerevisiae)	protein-coding
chr2.71295963.+	chr2	71295963	71295964	+	0	NA	"intron (NM_017567, intron 1 of 9)"	CpG	555	NM_017567	55577	Hs.7036	NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
chr9.16748460.-	chr9	16748460	16748461	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122326	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr9.135013485.-	chr9	135013485	135013486	-	0	NA	Intergenic	AluSz|SINE|Alu	23849	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr3.39425756.+	chr3	39425756	39425757	+	0	NA	"intron (NM_017875, intron 1 of 6)"	CpG	941	NM_017875	54977	Hs.369615	NM_017875	ENSG00000144659	SLC25A38	-	"solute carrier family 25, member 38"	protein-coding
chr17.34072164.-	chr17	34072164	34072165	-	0	NA	"exon (NM_139285, exon 6 of 6)"	"exon (NM_139285, exon 6 of 6)"	-7733	NM_139285	246176	Hs.591194	NM_139285	ENSG00000132139	GAS2L2	GAR17	growth arrest-specific 2 like 2	protein-coding
chr3.164119661.-	chr3	164119661	164119662	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676622	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr11.63286718.+	chr11	63286718	63286719	+	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	11259	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr6.16831790.-	chr6	16831790	16831791	-	0	NA	Intergenic	AluY|SINE|Alu	70069	NM_000332	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
chr3.20070757.-	chr3	20070757	20070758	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10767	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr2.224254290.-	chr2	224254290	224254291	-	0	NA	Intergenic	MER49|LTR|ERV1	-212927	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
chrM.6575.-	chrM	6575	6576	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.3219076.+	chr19	3219076	3219077	+	0	NA	Intergenic	AluY|SINE|Alu	-5625	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr1.26591555.+	chr1	26591555	26591556	+	0	NA	"intron (NM_022778, intron 7 of 13)"	AluSx1|SINE|Alu	-14658	NM_031286	83442	Hs.109051	NM_031286		SH3BGRL3	SH3BP-1|TIP-B1	SH3 domain binding glutamic acid-rich protein like 3	protein-coding
chr19.16781118.+	chr19	16781118	16781119	+	0	NA	"intron (NM_024074, intron 1 of 5)"	AluSq|SINE|Alu	9180	NM_024074	79041	Hs.436068	NM_024074		TMEM38A	TRIC-A|TRICA	transmembrane protein 38A	protein-coding
chr17.37146005.-	chr17	37146005	37146006	-	0	NA	Intergenic	AluY|SINE|Alu	22350	NM_001008777	494188	Hs.549536	NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
chrX.109043285.-	chrX	109043285	109043286	-	0	NA	Intergenic	AluY|SINE|Alu	66664	NM_004458	2182	Hs.268785	NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
chr2.233499458.-	chr2	233499458	233499459	-	0	NA	"intron (NM_025202, intron 1 of 3)"	CpG	-1251	NM_025202	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr19.35418184.-	chr19	35418184	35418185	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-377	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr13.101240978.+	chr13	101240978	101240979	+	0	NA	promoter-TSS (NM_001195087)	promoter-TSS (NM_001195087)	68	NM_001195087	87769	Hs.350868	NM_001195087		GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
chr21.37627681.-	chr21	37627681	37627682	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64806	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr6.126111917.-	chr6	126111917	126111918	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-8	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr11.9243362.-	chr11	9243362	9243363	-	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	-43511	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chrX.13062350.+	chrX	13062350	13062351	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	567	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr3.20353468.-	chr3	20353468	20353469	-	0	NA	Intergenic	AluYk4|SINE|Alu	125744	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr17.45349541.+	chr17	45349541	45349542	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18333	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chrX.112142812.-	chrX	112142812	112142813	-	0	NA	Intergenic	AluY|SINE|Alu	58769	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr16.440487.-	chr16	440487	440488	-	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	6705	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr1.180202739.+	chr1	180202739	180202740	+	0	NA	"intron (NM_033343, intron 1 of 5)"	CpG-1965	3306	NM_033343	89884	Hs.658487	NM_033343		LHX4	CPHD4	LIM homeobox 4	protein-coding
chr7.1497129.+	chr7	1497129	1497130	+	0	NA	"intron (NM_182924, intron 1 of 16)"	L2b|LINE|L2	1980	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr6.64246109.+	chr6	64246109	64246110	+	0	NA	Intergenic	AluSq|SINE|Alu	-35811	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr6.64268059.+	chr6	64268059	64268060	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13861	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr2.85554139.+	chr2	85554139	85554140	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1280	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr22.46443050.+	chr22	46443050	46443051	+	0	NA	Intergenic	AluSg|SINE|Alu	-2302	NR_027036	100271722	Hs.528519	NR_027036		LOC100271722	-	uncharacterized LOC100271722	miscRNA
chr5.140315612.-	chr5	140315612	140315613	-	0	NA	"intron (NM_018898, intron 1 of 3)"	AluSx1|SINE|Alu	-9310	NM_018898	56135	Hs.199343	NM_018898	ENSG00000248383	PCDHAC1	PCDH-ALPHA-C1	"protocadherin alpha subfamily C, 1"	protein-coding
chr17.48631007.-	chr17	48631007	48631008	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6557	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr11.118672116.+	chr11	118672116	118672117	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10144	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr20.33062708.-	chr20	33062708	33062709	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8578	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr12.131191648.-	chr12	131191648	131191649	-	0	NA	Intergenic	Intergenic	-132171	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr16.30960876.-	chr16	30960876	30960877	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-471	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr6.157734068.-	chr6	157734068	157734069	-	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	-11185	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr11.71702981.+	chr11	71702981	71702982	+	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	-6977	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr1.51984047.+	chr1	51984047	51984048	+	0	NA	"intron (NM_001981, intron 1 of 24)"	"intron (NM_001981, intron 1 of 24)"	948	NM_001981	2060	Hs.83722	NM_001159969	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
chr19.5409944.-	chr19	5409944	5409945	-	0	NA	Intergenic	AluY|SINE|Alu	45482	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr2.107084261.-	chr2	107084261	107084262	-	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	-540	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chr15.44092827.+	chr15	44092827	44092828	+	0	NA	promoter-TSS (NM_001258032)	promoter-TSS (NM_001258032)	208	NM_001199885	25764	Hs.730672	NM_001199885	ENSG00000140264	HYPK	C15orf63	huntingtin interacting protein K	protein-coding
chr20.31565640.+	chr20	31565640	31565641	+	0	NA	Intergenic	Intergenic	26599	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr3.42630488.+	chr3	42630488	42630489	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1810	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr4.1358081.+	chr4	1358081	1358082	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16977	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr7.1798928.-	chr7	1798928	1798929	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50130	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr4.177987445.-	chr4	177987445	177987446	-	0	NA	Intergenic	AluY|SINE|Alu	243546	NM_018248	55247	Hs.405467	NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|hFPG2|hNEI3	nei endonuclease VIII-like 3 (E. coli)	protein-coding
chr10.103815812.-	chr10	103815812	103815813	-	0	NA	"intron (NM_024541, intron 1 of 25)"	CpG	-120	NM_024541	79591	Hs.16004	NM_024541	ENSG00000120029	C10orf76	-	chromosome 10 open reading frame 76	protein-coding
chr10.130260166.-	chr10	130260166	130260167	-	0	NA	Intergenic	Intergenic	335698	NM_001145966	4288	Hs.689823	NM_001145966	ENSG00000148773	MKI67	KIA	antigen identified by monoclonal antibody Ki-67	protein-coding
chr6.73869940.+	chr6	73869940	73869941	+	0	NA	"intron (NM_019842, intron 10 of 13)"	AluY|SINE|Alu	-16703	NR_046621	100873997	Hs.743196	NR_046621	ENSG00000229154	KCNQ5-AS1	-	KCNQ5 antisense RNA 1	miscRNA
chr2.202092481.-	chr2	202092481	202092482	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5685	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr19.13497340.+	chr19	13497340	13497341	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119934	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr3.128362569.-	chr3	128362569	128362570	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7150	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr6.165205820.+	chr6	165205820	165205821	+	0	NA	Intergenic	AluYb8|SINE|Alu	517291	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr19.18180381.+	chr19	18180381	18180382	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17316	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr15.81072300.+	chr15	81072300	81072301	+	0	NA	"intron (NM_018689, intron 1 of 28)"	CpG	588	NM_018689	57214	Hs.459088	NM_018689	ENSG00000103888	KIAA1199	CCSP1|TMEM2L	KIAA1199	protein-coding
chr6.322753.+	chr6	322753	322754	+	0	NA	"intron (NM_020185, intron 3 of 7)"	"intron (NM_020185, intron 3 of 7)"	30652	NM_020185	56940	Hs.29106	NM_020185		DUSP22	JKAP|JSP1|LMWDSP2|MKPX|VHX	dual specificity phosphatase 22	protein-coding
chr9.21968312.+	chr9	21968312	21968313	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1174	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr9.127105722.-	chr9	127105722	127105723	-	0	NA	"intron (NM_001166170, intron 8 of 9)"	"intron (NM_001166170, intron 8 of 9)"	10030	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	miscRNA
chr20.33283470.+	chr20	33283470	33283471	+	0	NA	Intergenic	AluY|SINE|Alu	-8678	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr1.160062902.-	chr1	160062902	160062903	-	0	NA	"exon (NM_052868, exon 4 of 7)"	"exon (NM_052868, exon 4 of 7)"	-5537	NM_052868	93185	Hs.743982	NM_001206665	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	"immunoglobulin superfamily, member 8"	protein-coding
chr7.45775919.+	chr7	45775919	45775920	+	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	32698	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr17.78189878.-	chr17	78189878	78189879	-	0	NA	"intron (NM_000199, intron 2 of 7)"	AluSz|SINE|Alu	-4321	NM_000199	6448	Hs.31074	NM_000199	ENSG00000181523	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
chr2.236999651.-	chr2	236999651	236999652	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-77001	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr17.1637970.-	chr17	1637970	1637971	-	0	NA	"intron (NM_152348, intron 8 of 10)"	AluSc8|SINE|Alu	8160	NM_001165921	5345	Hs.159509	NM_000934	ENSG00000167711	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI	"serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2"	protein-coding
chr17.78199804.-	chr17	78199804	78199805	-	0	NA	"intron (NM_173626, intron 6 of 17)"	"intron (NM_173626, intron 6 of 17)"	-5604	NM_001166347	284129	Hs.4866	NM_001166347	ENSG00000181045	SLC26A11	-	"solute carrier family 26, member 11"	protein-coding
chr13.31024000.-	chr13	31024000	31024001	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16081	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr9.134449900.+	chr9	134449900	134449901	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43238	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr7.95234875.+	chr7	95234875	95234876	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8950	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr14.51521356.+	chr14	51521356	51521357	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	41066	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr13.34113107.+	chr13	34113107	34113108	+	0	NA	"intron (NM_001243476, intron 3 of 17)"	AluY|SINE|Alu	137825	NM_001243476	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr22.24237323.+	chr22	24237323	24237324	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	758	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr1.36675732.-	chr1	36675732	36675733	-	0	NA	Intergenic	AluSc8|SINE|Alu	14285	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
chr5.19804198.-	chr5	19804198	19804199	-	0	NA	"intron (NM_001167667, intron 3 of 12)"	AluY|SINE|Alu	-184155	NM_004934	1016	Hs.317632	NM_001167667	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	"cadherin 18, type 2"	protein-coding
chr9.16766050.-	chr9	16766050	16766051	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104736	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr6.33806260.+	chr6	33806260	33806261	+	0	NA	Intergenic	Intergenic	-34467	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr1.228427865.-	chr1	228427865	228427866	-	0	NA	"intron (NM_001271223, intron 10 of 115)"	AluY|SINE|Alu	26500	NR_073154	574407	Hs.650039	NM_001025495	ENSG00000162913	C1orf145	-	chromosome 1 open reading frame 145	miscRNA
chr7.5570076.+	chr7	5570076	5570077	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	156	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr17.47413991.-	chr17	47413991	47413992	-	0	NA	"intron (NM_014897, intron 1 of 5)"	AluSg|SINE|Alu	-25485	NM_001145365	22834	Hs.463375	NM_001145365		ZNF652	-	zinc finger protein 652	protein-coding
chr9.131099679.+	chr9	131099679	131099680	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3160	NM_005094	10999	Hs.656699	NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	"solute carrier family 27 (fatty acid transporter), member 4"	protein-coding
chr8.10386073.-	chr8	10386073	10386074	-	0	NA	"intron (NM_198464, intron 1 of 4)"	"intron (NM_198464, intron 1 of 4)"	-3017	NM_198464	203074	Hs.591394	NM_001197020	ENSG00000184647	PRSS55	T-SP1|UNQ9391	"protease, serine, 55"	protein-coding
chr9.99114710.+	chr9	99114710	99114711	+	0	NA	"intron (NM_007001, intron 4 of 11)"	AluSx|SINE|Alu	31282	NM_007001	11046	Hs.731624	NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	"solute carrier family 35, member D2"	protein-coding
chr1.28003918.-	chr1	28003918	28003919	-	0	NA	Intergenic	AluY|SINE|Alu	5194	NM_002038	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr20.51938379.+	chr20	51938379	51938380	+	0	NA	"intron (NM_173485, intron 2 of 2)"	MER102a|DNA|hAT-Charlie	136557	NM_001193421	128553	Hs.473117	NM_001193421		TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
chr8.120878234.+	chr8	120878234	120878235	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7666	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr10.28821796.+	chr10	28821796	28821797	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	374	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr2.21484584.+	chr2	21484584	21484585	+	0	NA	Intergenic	Intergenic	-217639	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr17.29255135.-	chr17	29255135	29255136	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6381	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr17.38239327.+	chr17	38239327	38239328	+	0	NA	"intron (NM_199334, intron 4 of 8)"	AluY|SINE|Alu	17651	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr6.5085619.+	chr6	5085619	5085620	+	0	NA	promoter-TSS (NM_001145115)	promoter-TSS (NM_001145115)	-101	NM_001145115	648791	Hs.653089	NM_001145115	ENSG00000219607	PPP1R3G	-	"protein phosphatase 1, regulatory subunit 3G"	protein-coding
chr2.35387176.+	chr2	35387176	35387177	+	0	NA	Intergenic	AluY|SINE|Alu	1195537	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr16.3203712.-	chr16	3203712	3203713	-	0	NA	Intergenic	AluSg|SINE|Alu	-18578	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr16.440472.-	chr16	440472	440473	-	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	6720	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr9.16855823.-	chr9	16855823	16855824	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14963	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr19.19594705.-	chr19	19594705	19594706	-	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	-31764	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr6.108315273.-	chr6	108315273	108315274	-	0	NA	Intergenic	AluSz|SINE|Alu	35791	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr2.48079316.+	chr2	48079316	48079317	+	0	NA	"intron (NM_001190274, intron 1 of 22)"	AluSx1|SINE|Alu	36542	NM_025133	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chr1.21671593.-	chr1	21671593	21671594	-	0	NA	"intron (NM_001113348, intron 1 of 18)"	CpG	-441	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr12.57177807.+	chr12	57177807	57177808	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20699	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr7.45775959.+	chr7	45775959	45775960	+	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	32658	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr7.100963622.+	chr7	100963622	100963623	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1471	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr1.112631813.+	chr1	112631813	112631814	+	0	NA	Intergenic	AluY|SINE|Alu	98623	NM_001270945	643355	Hs.279714	NM_001270945		LOC643355	-	uncharacterized LOC643355	protein-coding
chr9.83470.-	chr9	83470	83471	-	0	NA	Intergenic	SVA_E|Other|Other	-34947	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr1.8021849.-	chr1	8021849	8021850	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-135	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr2.173941038.-	chr2	173941038	173941039	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-473	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr5.14460486.+	chr5	14460486	14460487	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121405	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr22.46504411.+	chr22	46504411	46504412	+	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	-4218	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr1.8837724.+	chr1	8837724	8837725	+	0	NA	"intron (NM_001042681, intron 1 of 22)"	AluY|SINE|Alu	39975	NM_012102	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr9.72433100.-	chr9	72433100	72433101	-	0	NA	Intergenic	AluY|SINE|Alu	-2555	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr7.158068852.+	chr7	158068852	158068853	+	0	NA	"intron (NM_130842, intron 2 of 21)"	"intron (NM_130842, intron 2 of 21)"	256653	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr3.53225250.+	chr3	53225250	53225251	+	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	30027	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr11.638950.-	chr11	638950	638951	-	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	-1645	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr6.126111919.+	chr6	126111919	126111920	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	10	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr14.73651095.-	chr14	73651095	73651096	-	0	NA	"intron (NM_000021, intron 5 of 11)"	SVA_F|Other|Other	-47952	NM_007318	5663	Hs.3260	NM_000021	ENSG00000080815	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
chr13.112726547.-	chr13	112726547	112726548	-	0	NA	TTS (NM_005986)	TTS (NM_005986)	-4634	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr3.66551559.-	chr3	66551559	66551560	-	0	NA	promoter-TSS (NM_015541)	promoter-TSS (NM_015541)	714	NM_015541	26018	Hs.518055	NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding
chr8.144020475.-	chr8	144020475	144020476	-	0	NA	Intergenic	Intergenic	21216	NM_000498	1585	Hs.632054	NM_000498	ENSG00000179142	CYP11B2	ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo	"cytochrome P450, family 11, subfamily B, polypeptide 2"	protein-coding
chr19.33557626.-	chr19	33557626	33557627	-	0	NA	Intergenic	Intergenic	1802	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr11.65792967.+	chr11	65792967	65792968	+	0	NA	"exon (NM_053054, exon 1 of 12)"	"exon (NM_053054, exon 1 of 12)"	1021	NM_053054	117144	Hs.189105	NM_053054	ENSG00000175294	CATSPER1	CATSPER|SPGF7	"cation channel, sperm associated 1"	protein-coding
chr12.64883609.+	chr12	64883609	64883610	+	0	NA	"intron (NM_013254, intron 12 of 20)"	AluSc8|SINE|Alu	37769	NM_013254	29110	Hs.505874	NM_013254	ENSG00000183735	TBK1	NAK|T2K	TANK-binding kinase 1	protein-coding
chr8.125487382.-	chr8	125487382	125487383	-	0	NA	"exon (NM_007218, exon 1 of 2)"	"exon (NM_007218, exon 1 of 2)"	-374	NM_007218	11236	Hs.744151	NM_007218		RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
chr2.3190720.-	chr2	3190720	3190721	-	0	NA	Intergenic	Intergenic	-190933	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr18.8383149.-	chr18	8383149	8383150	-	0	NA	"intron (NM_001105244, intron 29 of 32)"	AluSc|SINE|Alu	16117	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	miscRNA
chr9.140728433.-	chr9	140728433	140728434	-	0	NA	"intron (NM_024757, intron 25 of 26)"	"intron (NM_024757, intron 25 of 26)"	4438	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	miscRNA
chrX.191442.-	chrX	191442	191443	-	0	NA	Intergenic	Intergenic	1549	NR_028057	55344	Hs.522568	NM_018390	ENSG00000182378	PLCXD1	-	"phosphatidylinositol-specific phospholipase C, X domain containing 1"	protein-coding
chr7.104040182.-	chr7	104040182	104040183	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71078	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr3.31574003.-	chr3	31574003	31574004	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	488	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr20.61604902.-	chr20	61604902	61604903	-	0	NA	Intergenic	Intergenic	-20903	NM_022082	63910	Hs.512686	NM_022082	ENSG00000101194	SLC17A9	C20orf59	"solute carrier family 17, member 9"	protein-coding
chr5.133831566.+	chr5	133831566	133831567	+	0	NA	Intergenic	AluY|SINE|Alu	-30232	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr5.178287370.+	chr5	178287370	178287371	+	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	416	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr10.123791049.-	chr10	123791049	123791050	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42360	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chrX.48975600.+	chrX	48975600	48975601	+	0	NA	"intron (NM_015698, intron 4 of 10)"	AluY|SINE|Alu	4479	NM_015698	27238	Hs.503666	NM_015698		GPKOW	GPATC5|GPATCH5|Spp2|T54	G patch domain and KOW motifs	protein-coding
chrX.86734347.+	chrX	86734347	86734348	+	0	NA	Intergenic	AluY|SINE|Alu	-38368	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr3.45635766.-	chr3	45635766	45635767	-	0	NA	promoter-TSS (NM_014240)	promoter-TSS (NM_014240)	557	NM_014240	8994	Hs.621057	NM_014240		LIMD1	-	LIM domains containing 1	protein-coding
chr2.10198519.+	chr2	10198519	10198520	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14147	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr3.32863314.+	chr3	32863314	32863315	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3804	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr13.114446692.+	chr13	114446692	114446693	+	0	NA	Intergenic	Intergenic	7370	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr3.49862168.-	chr3	49862168	49862169	-	0	NA	Intergenic	AluSx|SINE|Alu	10777	NM_003335	7318	Hs.16695	NM_003335	ENSG00000182179	UBA7	D8|UBA1B|UBE1L|UBE2	ubiquitin-like modifier activating enzyme 7	protein-coding
chr10.17622288.-	chr10	17622288	17622289	-	0	NA	Intergenic	AluY|SINE|Alu	-37085	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr4.1311078.+	chr4	1311078	1311079	+	0	NA	"intron (NM_005882, intron 3 of 7)"	C-rich|Low_complexity|Low_complexity	27406	NM_001017405	10296	Hs.139896	NM_001017405	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|PIG5	macrophage erythroblast attacher	protein-coding
chr7.156795099.-	chr7	156795099	156795100	-	0	NA	Intergenic	Intergenic	-7030	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr10.116446547.-	chr10	116446547	116446548	-	0	NA	Intergenic	AluJo|SINE|Alu	2133	NM_001003407	3983	Hs.593868	NM_001003407	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
chr19.1205497.-	chr19	1205497	1205498	-	0	NA	promoter-TSS (NM_000455)	promoter-TSS (NM_000455)	301	NM_000455	6794	Hs.515005	NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
chr9.66500831.+	chr9	66500831	66500832	+	0	NA	"non-coding (NR_024496, exon 2 of 2)"	"non-coding (NR_024496, exon 2 of 2)"	6562	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr15.51200447.-	chr15	51200447	51200448	-	0	NA	promoter-TSS (NM_001252127)	promoter-TSS (NM_001252127)	422	NM_007347	23431	Hs.413366	NM_001252127	ENSG00000081014	AP4E1	CPSQ4|SPG51	"adaptor-related protein complex 4, epsilon 1 subunit"	protein-coding
chr2.220430201.+	chr2	220430201	220430202	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6067	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr12.7858596.+	chr12	7858596	7858597	+	0	NA	Intergenic	CpG	-5493	NM_199286	359787	Hs.131358	NM_199286	ENSG00000187569	DPPA3	STELLA	developmental pluripotency associated 3	protein-coding
chr19.8324310.+	chr19	8324310	8324311	+	0	NA	"intron (NM_024552, intron 10 of 11)"	L2a|LINE|L2	48930	NM_016579	51293	Hs.558499	NM_001165895	ENSG00000167775	CD320	8D6|8D6A|TCBLR	CD320 molecule	protein-coding
chr17.34053766.-	chr17	34053766	34053767	-	0	NA	TTS (NM_001282)	TTS (NM_001282)	4913	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr2.11541739.+	chr2	11541739	11541740	+	0	NA	"intron (NR_047499, intron 2 of 2)"	AluY|SINE|Alu	7632	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	miscRNA
chrX.5704219.-	chrX	5704219	5704220	-	0	NA	Intergenic	AluSx|SINE|Alu	-441669	NM_020742	57502	Hs.21107	NM_020742	ENSG00000146938	NLGN4X	ASPGX2|AUTSX2|HLNX|HNL4X|HNLX|NLGN|NLGN4	"neuroligin 4, X-linked"	protein-coding
chr8.98771799.-	chr8	98771799	98771800	-	0	NA	Intergenic	AluSq10|SINE|Alu	16010	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr2.129491397.-	chr2	129491397	129491398	-	0	NA	Intergenic	Intergenic	415226	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr19.50639927.+	chr19	50639927	50639928	+	0	NA	Intergenic	AluSx|SINE|Alu	2567	NR_024231	100170224	Hs.446545	NR_024231		SNAR-B1	-	small ILF3/NF90-associated RNA B1	snRNA
chr12.49856912.-	chr12	49856912	49856913	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73955	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr4.1358123.-	chr4	1358123	1358124	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17019	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr20.34893939.-	chr20	34893939	34893940	-	0	NA	Intergenic	CpG	-69600	NM_001271874	25980	Hs.744306	NM_001271874	ENSG00000131043	AAR2	C20orf4	AAR2 splicing factor homolog (S. cerevisiae)	protein-coding
chr5.93681533.+	chr5	93681533	93681534	+	0	NA	"intron (NM_001145678, intron 20 of 20)"	LTR2|LTR|ERV1	-234129	NM_001163418	83989	Hs.600086	NM_001163417	ENSG00000113391	FAM172A	C5orf21	"family with sequence similarity 172, member A"	protein-coding
chr17.8061032.+	chr17	8061032	8061033	+	0	NA	Intergenic	AluY|SINE|Alu	5261	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chrX.81762804.-	chrX	81762804	81762805	-	0	NA	Intergenic	AluY|SINE|Alu	1000465	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr9.74464954.-	chr9	74464954	74464955	-	0	NA	Intergenic	AluY|SINE|Alu	-61194	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr18.70534387.+	chr18	70534387	70534388	+	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	423	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr16.66959697.-	chr16	66959697	66959698	-	0	NA	promoter-TSS (NM_001128850)	promoter-TSS (NM_001128850)	258	NM_004165	6236	Hs.1027	NM_001128850	ENSG00000166592	RRAD	RAD|RAD1|REM3	Ras-related associated with diabetes	protein-coding
chr1.217394798.+	chr1	217394798	217394799	+	0	NA	Intergenic	AluSq2|SINE|Alu	-83701	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr7.5396354.-	chr7	5396354	5396355	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	-66823	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr3.126260598.-	chr3	126260598	126260599	-	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	-17160	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr5.180198332.-	chr5	180198332	180198333	-	0	NA	Intergenic	SVA_D|Other|Other	31274	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr2.240101074.+	chr2	240101074	240101075	+	0	NA	"intron (NM_006037, intron 4 of 26)"	MER1B|DNA|hAT-Charlie	16079	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	miscRNA
chr4.26862268.+	chr4	26862268	26862269	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-45	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr18.70912364.+	chr18	70912364	70912365	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19369	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chrX.80065531.+	chrX	80065531	80065532	+	0	NA	promoter-TSS (NM_153252)	promoter-TSS (NM_153252)	-298	NM_153252	254065	Hs.613180	NM_153252	ENSG00000165288	BRWD3	BRODL|MRX93	bromodomain and WD repeat domain containing 3	protein-coding
chr9.135356087.+	chr9	135356087	135356088	+	0	NA	"intron (NM_207417, intron 1 of 6)"	L2b|LINE|L2	70476	NM_207417	389799	Hs.201709	NM_207417	ENSG00000188523	C9orf171	-	chromosome 9 open reading frame 171	protein-coding
chr2.68031683.+	chr2	68031683	68031684	+	0	NA	Intergenic	AluY|SINE|Alu	258476	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr7.1592407.-	chr7	1592407	1592408	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	-3659	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr3.42630489.+	chr3	42630489	42630490	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1809	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr1.97029348.-	chr1	97029348	97029349	-	0	NA	Intergenic	AluSp|SINE|Alu	157827	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr12.33592852.+	chr12	33592852	33592853	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-98	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr19.48814154.+	chr19	48814154	48814155	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9178	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr1.12567866.-	chr1	12567866	12567867	-	0	NA	TTS (NR_003022)	TTS (NR_003022)	-566	NR_003022	677882	Hs.721005	NR_003022		SNORA59B	ACA59	"small nucleolar RNA, H/ACA box 59B"	snoRNA
chr2.175518189.-	chr2	175518189	175518190	-	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	18882	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr22.50959104.+	chr22	50959104	50959105	+	0	NA	TTS (NM_014551)	TTS (NM_014551)	4929	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr2.110631833.+	chr2	110631833	110631834	+	0	NA	Intergenic	AluY|SINE|Alu	-24176	NR_027467	96626	Hs.535619	NM_033514	ENSG00000256977	LIMS3	PINCH-3	LIM and senescent cell antigen-like domains 3	protein-coding
chr1.31773687.+	chr1	31773687	31773688	+	0	NA	"intron (NM_016505, intron 1 of 7)"	AluSq2|SINE|Alu	3845	NM_016505	51538	Hs.524094	NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|RP11-266K22.1|pNO40	"zinc finger, CCHC domain containing 17"	protein-coding
chr12.112051666.+	chr12	112051666	112051667	+	0	NA	Intergenic	AluY|SINE|Alu	-14186	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chr1.97799048.-	chr1	97799048	97799049	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluSc|SINE|Alu	-237569	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr13.112597806.+	chr13	112597806	112597807	+	0	NA	Intergenic	MIRc|SINE|MIR	-124107	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr13.20711701.+	chr13	20711701	20711702	+	0	NA	TTS (NM_021954)	TTS (NM_021954)	23482	NM_021954	2700	Hs.130313	NM_021954	ENSG00000121743	GJA3	CX46|CZP3	"gap junction protein, alpha 3, 46kDa"	protein-coding
chr22.34296788.+	chr22	34296788	34296789	+	0	NA	"intron (NM_004737, intron 1 of 15)"	AluSx|SINE|Alu	19628	NM_133642	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr14.102101588.+	chr14	102101588	102101589	+	0	NA	Intergenic	CpG	73900	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chrX.58290082.+	chrX	58290082	58290083	+	0	NA	Intergenic	GSATX|Satellite|centr	-353015	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	"zinc finger, X-linked, duplicated A"	protein-coding
chr19.47789242.+	chr19	47789242	47789243	+	0	NA	Intergenic	AluSq2|SINE|Alu	11100	NM_178511	255783	Hs.128690	NM_178511	ENSG00000257704	PRR24	-	proline rich 24	protein-coding
chr20.13654594.-	chr20	13654594	13654595	-	0	NA	Intergenic	AluY|SINE|Alu	35011	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr2.208031307.-	chr2	208031307	208031308	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-273	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr12.125357954.-	chr12	125357954	125357955	-	0	NA	Intergenic	L2a|LINE|L2	9435	NM_001082959	949	Hs.731377	NM_001082959	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	"scavenger receptor class B, member 1"	protein-coding
chr17.38400026.+	chr17	38400026	38400027	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24452	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr1.10727910.-	chr1	10727910	10727911	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128823	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chrX.93693250.+	chrX	93693250	93693251	+	0	NA	Intergenic	AluY|SINE|Alu	764238	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chr8.39796535.-	chr8	39796535	39796536	-	0	NA	"intron (NM_194294, intron 1 of 10)"	AluSx1|SINE|Alu	-4061	NM_194294	169355	Hs.676257	NM_194294	ENSG00000188676	IDO2	INDOL1	"indoleamine 2,3-dioxygenase 2"	protein-coding
chr19.23474354.+	chr19	23474354	23474355	+	0	NA	Intergenic	AluSx|SINE|Alu	-41182	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr11.66914779.+	chr11	66914779	66914780	+	0	NA	"intron (NM_012308, intron 2 of 20)"	AluY|SINE|Alu	28039	NR_027473	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr1.28207920.+	chr1	28207920	28207921	+	0	NA	"intron (NM_004848, intron 3 of 4)"	AluY|SINE|Alu	8865	NM_001039477	9473	Hs.10649	NM_001039477	ENSG00000130775	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
chr4.54103738.+	chr4	54103738	54103739	+	0	NA	"intron (NM_152540, intron 4 of 8)"	SVA_D|Other|Other	128504	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr5.675428.-	chr5	675428	675429	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18082	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr8.81679096.+	chr8	81679096	81679097	+	0	NA	"intron (NM_001033723, intron 2 of 8)"	AluSx|SINE|Alu	107920	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
chr2.1896173.+	chr2	1896173	1896174	+	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	-147882	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr10.133230287.-	chr10	133230287	133230288	-	0	NA	Intergenic	L2b|LINE|L2	120303	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr19.267157.+	chr19	267157	267158	+	0	NA	Intergenic	CpG	24012	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr12.57177796.+	chr12	57177796	57177797	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20688	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr3.136117029.+	chr3	136117029	136117030	+	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	147862	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr11.1476591.+	chr11	1476591	1476592	+	0	NA	"intron (NM_003957, intron 16 of 19)"	"intron (NM_003957, intron 16 of 19)"	31357	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr2.159693869.+	chr2	159693869	159693870	+	0	NA	Intergenic	AluSp|SINE|Alu	42040	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr13.25027220.+	chr13	25027220	25027221	+	0	NA	"intron (NM_006437, intron 23 of 33)"	AluSx1|SINE|Alu	59728	NM_006437	143	Hs.117825	NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	"poly (ADP-ribose) polymerase family, member 4"	protein-coding
chr2.213546690.-	chr2	213546690	213546691	-	0	NA	Intergenic	AluSc8|SINE|Alu	143338	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr13.100934722.-	chr13	100934722	100934723	-	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	-193453	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr20.62038583.+	chr20	62038583	62038584	+	0	NA	"exon (NM_172107, exon 17 of 17)"	"exon (NM_172107, exon 17 of 17)"	-45835	NM_001256573	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr2.242447237.+	chr2	242447237	242447238	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	538	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr8.98771790.-	chr8	98771790	98771791	-	0	NA	Intergenic	AluSq10|SINE|Alu	16019	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr20.5213534.+	chr20	5213534	5213535	+	0	NA	Intergenic	AluJr4|SINE|Alu	81481	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr16.616139.+	chr16	616139	616140	+	0	NA	promoter-TSS (NM_176677)	promoter-TSS (NM_176677)	-893	NM_176677	283948	Hs.664267	NM_176677	ENSG00000257108	NHLRC4	-	NHL repeat containing 4	protein-coding
chr11.67028745.-	chr11	67028745	67028746	-	0	NA	Intergenic	MIRb|SINE|MIR	5160	NM_001619	156	Hs.83636	NM_001619	ENSG00000173020	ADRBK1	BARK1|BETA-ARK1|GRK2	"adrenergic, beta, receptor kinase 1"	protein-coding
chr2.105472112.-	chr2	105472112	105472113	-	0	NA	"exon (NM_006236, exon 1 of 1)"	"exon (NM_006236, exon 1 of 1)"	-143	NM_006236	5455	Hs.673855	NM_006236		POU3F3	BRN1|OTF8	POU class 3 homeobox 3	protein-coding
chr2.87655675.+	chr2	87655675	87655676	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-99299	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr10.20638021.-	chr10	20638021	20638022	-	0	NA	Intergenic	Intergenic	202878	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr5.1038035.-	chr5	1038035	1038036	-	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	-25054	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr12.32064895.+	chr12	32064895	32064896	+	0	NA	Intergenic	AluY|SINE|Alu	-47458	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr7.5570092.-	chr7	5570092	5570093	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-140	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr19.48814187.+	chr19	48814187	48814188	+	0	NA	"intron (NM_144577, intron 5 of 13)"	NA	9145	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr16.3646183.-	chr16	3646183	3646184	-	0	NA	"exon (NM_032444, exon 8 of 15)"	"exon (NM_032444, exon 8 of 15)"	-15402	NM_032444	84464	Hs.143681	NM_032444	ENSG00000188827	SLX4	BTBD12|FANCP|MUS312	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding
chr1.32731822.+	chr1	32731822	32731823	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7890	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr22.46929375.+	chr22	46929375	46929376	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3692	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr19.18180428.-	chr19	18180428	18180429	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17269	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr1.178011440.+	chr1	178011440	178011441	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4298	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr21.47838754.-	chr21	47838754	47838755	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40108	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr7.155246430.-	chr7	155246430	155246431	-	0	NA	Intergenic	CpG	4394	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr10.134743495.-	chr10	134743495	134743496	-	0	NA	"intron (NM_001200049, intron 8 of 57)"	"intron (NM_001200049, intron 8 of 57)"	-12594	NM_001200049	54777	Hs.719815	NM_001200049	ENSG00000171811	TTC40	C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	tetratricopeptide repeat domain 40	protein-coding
chr10.12223706.-	chr10	12223706	12223707	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14255	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr17.20588549.-	chr17	20588549	20588550	-	0	NA	Intergenic	SVA_D|Other|Other	27210	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr8.143694265.-	chr8	143694265	143694266	-	0	NA	"3' UTR (NM_015193, exon 1 of 3)"	"3' UTR (NM_015193, exon 1 of 3)"	-1568	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr1.40330243.+	chr1	40330243	40330244	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18934	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr12.49163961.-	chr12	49163961	49163962	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1859	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr6.17450412.-	chr6	17450412	17450413	-	0	NA	"intron (NM_006366, intron 3 of 12)"	AluY|SINE|Alu	-56676	NM_006366	10486	Hs.132902	NM_006366	ENSG00000112186	CAP2	-	"CAP, adenylate cyclase-associated protein, 2 (yeast)"	protein-coding
chr4.55034906.-	chr4	55034906	55034907	-	0	NA	Intergenic	AluSx3|SINE|Alu	60358	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr17.79427800.+	chr17	79427800	79427801	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9586	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr19.8017578.+	chr19	8017578	8017579	+	0	NA	Intergenic	AluJb|SINE|Alu	-8870	NM_006351	10469	Hs.465784	NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44 homolog (yeast)	protein-coding
chr1.239598799.+	chr1	239598799	239598800	+	0	NA	Intergenic	Intergenic	-193574	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	"cholinergic receptor, muscarinic 3"	protein-coding
chr3.186441602.-	chr3	186441602	186441603	-	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	-6504	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr22.46565291.+	chr22	46565291	46565292	+	0	NA	"intron (NM_001001928, intron 2 of 7)"	AluY|SINE|Alu	18792	NM_001001928	5465	Hs.710044	NM_001001928	ENSG00000186951	PPARA	NR1C1|PPAR|PPARalpha|hPPAR	peroxisome proliferator-activated receptor alpha	protein-coding
chr16.84754609.-	chr16	84754609	84754610	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	-21054	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr19.1453932.-	chr19	1453932	1453933	-	0	NA	"intron (NM_005883, intron 4 of 14)"	"intron (NM_005883, intron 4 of 14)"	-3784	NM_005883	10297	Hs.446376	NM_005883	ENSG00000115266	APC2	APCL	adenomatosis polyposis coli 2	protein-coding
chr7.5583860.-	chr7	5583860	5583861	-	0	NA	Intergenic	AluY|SINE|Alu	13628	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr7.5629201.+	chr7	5629201	5629202	+	0	NA	Intergenic	AluJo|SINE|Alu	-3235	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr10.35336427.-	chr10	35336427	35336428	-	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	-26831	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr11.33110420.+	chr11	33110420	33110421	+	0	NA	"intron (NM_001326, intron 17 of 20)"	AluJb|SINE|Alu	12724	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr16.12210433.-	chr16	12210433	12210434	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139831	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr1.24513572.+	chr1	24513572	24513573	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	193	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr3.53080072.-	chr3	53080072	53080073	-	0	NA	promoter-TSS (NM_016329)	promoter-TSS (NM_016329)	-17	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr3.134238125.-	chr3	134238125	134238126	-	0	NA	"intron (NM_001042400, intron 3 of 12)"	AluSx|SINE|Alu	-33078	NM_025180	80254	Hs.443301	NM_001042383	ENSG00000182923	CEP63	-	centrosomal protein 63kDa	protein-coding
chr12.75694233.-	chr12	75694233	75694234	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29603	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr2.89219893.+	chr2	89219893	89219894	+	0	NA	Intergenic	SVA_B|Other|Other	108009	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	-	microRNA 4436a	miscRNA
chr16.23194444.-	chr16	23194444	23194445	-	0	NA	"intron (NM_001039, intron 1 of 12)"	CpG	-404	NM_001039	6340	Hs.371727	NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|PHA1|SCNEG	"sodium channel, non-voltage-gated 1, gamma subunit"	protein-coding
chr9.74464985.-	chr9	74464985	74464986	-	0	NA	Intergenic	AluY|SINE|Alu	-61163	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr11.67085294.-	chr11	67085294	67085295	-	0	NA	promoter-TSS (NR_024469)	promoter-TSS (NR_024469)	16	NR_024469	100130987	Hs.664585	NR_024469		LOC100130987	-	uncharacterized LOC100130987	miscRNA
chr3.102974042.+	chr3	102974042	102974043	+	0	NA	Intergenic	SVA_D|Other|Other	820183	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr10.65358165.+	chr10	65358165	65358166	+	0	NA	"intron (NM_001001330, intron 4 of 7)"	AluSz|SINE|Alu	77042	NM_001001330	221035	Hs.499833	NM_001001330	ENSG00000165476	REEP3	C10orf74	receptor accessory protein 3	protein-coding
chr11.66997301.-	chr11	66997301	66997302	-	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	10205	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr2.163473832.-	chr2	163473832	163473833	-	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	-221425	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chr17.68536093.-	chr17	68536093	68536094	-	0	NA	Intergenic	AluSx3|SINE|Alu	-370417	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	"potassium inwardly-rectifying channel, subfamily J, member 2"	protein-coding
chr2.207036845.+	chr2	207036845	207036846	+	0	NA	Intergenic	SVA_D|Other|Other	9893	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr20.5213487.-	chr20	5213487	5213488	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81528	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr19.6196969.+	chr19	6196969	6196970	+	0	NA	Intergenic	AluY|SINE|Alu	61259	NM_030924	81616	Hs.465720	NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
chr9.138959030.-	chr9	138959030	138959031	-	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	-28101	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr2.58008668.-	chr2	58008668	58008669	-	0	NA	Intergenic	AluY|SINE|Alu	265109	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr9.94666440.-	chr9	94666440	94666441	-	0	NA	"intron (NM_004560, intron 1 of 8)"	AluSx|SINE|Alu	-46004	NM_004560	4920	Hs.644776	NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
chr12.93964997.+	chr12	93964997	93964998	+	0	NA	promoter-TSS (NM_001270470)	promoter-TSS (NM_001270470)	177	NR_038263	144481	Hs.733244	NR_038263	ENSG00000246985	SOCS2-AS1	-	SOCS2 antisense RNA 1	miscRNA
chr10.135270886.-	chr10	135270886	135270887	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3454	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chrX.53125843.+	chrX	53125843	53125844	+	0	NA	Intergenic	AluJb|SINE|Alu	14301	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr8.99627109.-	chr8	99627109	99627110	-	0	NA	"intron (NM_001256313, intron 4 of 8)"	L1PA2|LINE|L1	-187859	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chrX.99663877.-	chrX	99663877	99663878	-	0	NA	"5' UTR (NM_001105243, exon 1 of 5)"	"5' UTR (NM_001105243, exon 1 of 5)"	-1394	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr1.70733983.+	chr1	70733983	70733984	+	0	NA	"intron (NM_030816, intron 12 of 12)"	AluSq2|SINE|Alu	62618	NM_001190987	9295	Hs.479693	NM_001190987	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine/arginine-rich splicing factor 11	protein-coding
chr18.74140100.-	chr18	74140100	74140101	-	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	-67046	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr7.150812586.-	chr7	150812586	150812587	-	0	NA	"intron (NM_031946, intron 1 of 17)"	GC_rich|Low_complexity|Low_complexity	-28760	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr6.123144173.-	chr6	123144173	123144174	-	0	NA	Intergenic	AluY|SINE|Alu	-34202	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr22.50853124.-	chr22	50853124	50853125	-	0	NA	"intron (NM_001242898, intron 5 of 23)"	"intron (NM_001242898, intron 5 of 23)"	-60340	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr6.2945814.+	chr6	2945814	2945815	+	0	NA	Intergenic	AluSz6|SINE|Alu	16590	NM_001271825	5269	Hs.731506	NM_001195291	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	"serpin peptidase inhibitor, clade B (ovalbumin), member 6"	protein-coding
chrX.152953647.+	chrX	152953647	152953648	+	0	NA	promoter-TSS (NM_005629)	promoter-TSS (NM_005629)	-105	NM_005629	6535	Hs.540696	NM_001142805	ENSG00000130821	SLC6A8	CRT|CRTR|CT1	"solute carrier family 6 (neurotransmitter transporter, creatine), member 8"	protein-coding
chrM.11167.-	chrM	11167	11168	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.125475734.+	chr6	125475734	125475735	+	0	NA	"intron (NM_001003395, intron 1 of 6)"	GC_rich|Low_complexity|Low_complexity	314	NM_001003395	7164	Hs.591347	NM_001003395	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
chr16.30810977.-	chr16	30810977	30810978	-	0	NA	Intergenic	AluSx|SINE|Alu	12454	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr7.157129525.+	chr7	157129525	157129526	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-185	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr2.99466545.-	chr2	99466545	99466546	-	0	NA	"intron (NM_207362, intron 1 of 9)"	"intron (NM_207362, intron 1 of 9)"	-86139	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211-like	protein-coding
chr11.3224537.+	chr11	3224537	3224538	+	0	NA	Intergenic	CpG	-15025	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr1.231589825.+	chr1	231589825	231589826	+	0	NA	Intergenic	SVA_B|Other|Other	22446	NR_033826	645339	Hs.382049	NR_033826		SNRPD2P2	-	small nuclear ribonucleoprotein D2 pseudogene 2	pseudo
chr19.6307837.-	chr19	6307837	6307838	-	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	-25803	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr19.4932230.+	chr19	4932230	4932231	+	0	NA	promoter-TSS (NR_039902)	promoter-TSS (NR_039902)	-469	NR_039902	100616337		NR_039902		MIR4747	-	microRNA 4747	miscRNA
chr10.73848168.+	chr10	73848168	73848169	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	363	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr19.34623383.+	chr19	34623383	34623384	+	0	NA	Intergenic	SVA_D|Other|Other	-39969	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr2.240980377.+	chr2	240980377	240980378	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2022	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr22.50637756.+	chr22	50637756	50637757	+	0	NA	"3' UTR (NM_025204, exon 10 of 10)"	"3' UTR (NM_025204, exon 10 of 10)"	-1652	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chrX.103014801.+	chrX	103014801	103014802	+	0	NA	Intergenic	AluY|SINE|Alu	-16638	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr2.99061839.-	chr2	99061839	99061840	-	0	NA	"intron (NM_001134225, intron 1 of 24)"	CpG	-518	NM_001134224	3631	Hs.469386	NM_001134224	ENSG00000040933	INPP4A	INPP4|TVAS1	"inositol polyphosphate-4-phosphatase, type I, 107kDa"	protein-coding
chr4.185174259.+	chr4	185174259	185174260	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35145	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr16.68158312.-	chr16	68158312	68158313	-	0	NA	"intron (NM_004555, intron 2 of 10)"	AluJo|SINE|Alu	-39043	NM_004555	4775	Hs.436585	NM_004555	ENSG00000072736	NFATC3	NFAT4|NFATX	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3"	protein-coding
chr22.50352381.-	chr22	50352381	50352382	-	0	NA	Intergenic	Intergenic	1762	NM_001001852	415116	Hs.530381	NM_001001852	ENSG00000198355	PIM3	pim-3	pim-3 oncogene	protein-coding
chr9.134449895.-	chr9	134449895	134449896	-	0	NA	Intergenic	AluSx1|SINE|Alu	43233	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr20.62045299.+	chr20	62045299	62045300	+	0	NA	"intron (NM_172108, intron 13 of 15)"	"intron (NM_172108, intron 13 of 15)"	-52551	NM_001256573	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr2.232277195.-	chr2	232277195	232277196	-	0	NA	Intergenic	Intergenic	-16860	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr3.164119689.-	chr3	164119689	164119690	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676594	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr11.18742751.-	chr11	18742751	18742752	-	0	NA	"intron (NM_173588, intron 4 of 22)"	CpG	-5026	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chrX.129230992.-	chrX	129230992	129230993	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13483	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr22.39040975.+	chr22	39040975	39040976	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11659	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr18.76189781.+	chr18	76189781	76189782	+	0	NA	Intergenic	CpG	-550494	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr1.55505935.-	chr1	55505935	55505936	-	0	NA	"intron (NM_174936, intron 1 of 11)"	CpG	-786	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr16.89034061.+	chr16	89034061	89034062	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9443	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.158052711.-	chr2	158052711	158052712	-	0	NA	Intergenic	AluYk4|SINE|Alu	61629	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chrX.53123407.+	chrX	53123407	53123408	+	0	NA	Intergenic	CpG	11865	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr17.57645269.-	chr17	57645269	57645270	-	0	NA	"intron (NM_024612, intron 2 of 17)"	AluY|SINE|Alu	-2383	NM_024612	79665	Hs.29403	XM_003846599	ENSG00000108406	DHX40	DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding
chr12.43781885.+	chr12	43781885	43781886	+	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	163839	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr1.110881041.-	chr1	110881041	110881042	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-752	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr8.115172976.-	chr8	115172976	115172977	-	0	NA	Intergenic	AluY|SINE|Alu	723734	NM_198123	114788	Hs.91381	NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
chr14.24785813.-	chr14	24785813	24785814	-	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	-3500	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr22.20137599.+	chr22	20137599	20137600	+	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	-168	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr7.66479983.+	chr7	66479983	66479984	+	0	NA	"intron (NM_018264, intron 5 of 15)"	"intron (NM_018264, intron 5 of 15)"	18191	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr9.138663199.+	chr9	138663199	138663200	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69168	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr2.62740959.-	chr2	62740959	62740960	-	0	NA	Intergenic	AluY|SINE|Alu	7355	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr16.81849441.-	chr16	81849441	81849442	-	0	NA	"intron (NM_002661, intron 2 of 32)"	AluSz|SINE|Alu	-36542	NM_002661	5336	Hs.413111	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3	"phospholipase C, gamma 2 (phosphatidylinositol-specific)"	protein-coding
chr7.56888230.+	chr7	56888230	56888231	+	0	NA	Intergenic	Intergenic	61609	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr8.144267545.+	chr8	144267545	144267546	+	0	NA	Intergenic	CpG	-25492	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr5.3188304.-	chr5	3188304	3188305	-	0	NA	Intergenic	CpG	-347904	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr6.38402733.-	chr6	38402733	38402734	-	0	NA	"intron (NM_001172418, intron 5 of 10)"	AluSx|SINE|Alu	-161110	NM_001172418	114781	Hs.603858	NM_001099272	ENSG00000183826	BTBD9	dJ322I12.1	BTB (POZ) domain containing 9	protein-coding
chrX.53123342.+	chrX	53123342	53123343	+	0	NA	Intergenic	CpG	11800	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr3.1144599.+	chr3	1144599	1144600	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9970	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chrX.53123424.+	chrX	53123424	53123425	+	0	NA	Intergenic	CpG	11882	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.16748437.-	chr9	16748437	16748438	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122349	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr18.33543836.-	chr18	33543836	33543837	-	0	NA	Intergenic	AluY|SINE|Alu	8752	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr8.33580504.+	chr8	33580504	33580505	+	0	NA	Intergenic	CpG	-123065	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
chr11.64696274.+	chr11	64696274	64696275	+	0	NA	"intron (NM_006244, intron 6 of 13)"	AluYb8|SINE|Alu	4131	NM_006244	5526	Hs.75199	NM_006244	ENSG00000068971	PPP2R5B	B56B|PR61B	"protein phosphatase 2, regulatory subunit B', beta"	protein-coding
chr19.38755124.+	chr19	38755124	38755125	+	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	26	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr8.1321521.-	chr8	1321521	1321522	-	0	NA	Intergenic	CpG	70694	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr16.8974146.-	chr16	8974146	8974147	-	0	NA	Intergenic	Intergenic	11283	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr2.126700653.-	chr2	126700653	126700654	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712858	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr2.61619483.+	chr2	61619483	61619484	+	0	NA	"intron (NM_014709, intron 5 of 79)"	AluSx|SINE|Alu	25029	NR_003707	100124537	Hs.675825	NR_003707		SNORA70B	-	"small nucleolar RNA, H/ACA box 70B"	snoRNA
chr8.143916351.-	chr8	143916351	143916352	-	0	NA	"intron (NM_002066, intron 1 of 3)"	CpG	-134	NM_002066	2765	Hs.661218	NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
chr18.74844374.-	chr18	74844374	74844375	-	0	NA	"intron (NM_001025101, intron 1 of 8)"	CpG	-400	NM_001025100	4155	Hs.551713	NM_001025081	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
chr16.1824211.-	chr16	1824211	1824212	-	0	NA	"intron (NM_001257370, intron 2 of 7)"	"intron (NM_001257370, intron 2 of 7)"	-982	NM_001257370	197342	Hs.7247	NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic endonuclease 1 homolog 2 (S. pombe)	protein-coding
chr7.51276064.+	chr7	51276064	51276065	+	0	NA	"intron (NM_015198, intron 2 of 12)"	SVA_D|Other|Other	108451	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
chr2.71357875.+	chr2	71357875	71357876	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	431	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr2.44380944.-	chr2	44380944	44380945	-	0	NA	Intergenic	AluY|SINE|Alu	15056	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr1.10727952.-	chr1	10727952	10727953	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128781	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr9.6559754.-	chr9	6559754	6559755	-	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	-85938	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr5.112263719.+	chr5	112263719	112263720	+	0	NA	Intergenic	AluY|SINE|Alu	-5688	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr2.10916522.+	chr2	10916522	10916523	+	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	36438	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr19.58892111.-	chr19	58892111	58892112	-	0	NA	"intron (NM_138466, intron 1 of 2)"	CpG	-278	NR_049780	116412	Hs.222236	NM_001129730	ENSG00000152475	ZNF837	-	zinc finger protein 837	protein-coding
chr7.55379509.+	chr7	55379509	55379510	+	0	NA	Intergenic	SVA_D|Other|Other	-53632	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr16.75112404.+	chr16	75112404	75112405	+	0	NA	"intron (NM_032268, intron 1 of 4)"	AluSx|SINE|Alu	38266	NM_194436	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
chr19.15719736.-	chr19	15719736	15719737	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6293	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr21.47403474.-	chr21	47403474	47403475	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1811	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr8.144503751.-	chr8	144503751	144503752	-	0	NA	Intergenic	CpG	-8851	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr15.102506257.+	chr15	102506257	102506258	+	0	NA	"intron (NR_003659, intron 1 of 10)"	"intron (NR_003659, intron 1 of 10)"	5241	NR_003659	374666	Hs.585931	XR_172490		WASH3P	FAM39DP	WAS protein family homolog 3 pseudogene	pseudo
chr11.27721880.-	chr11	27721880	27721881	-	0	NA	promoter-TSS (NM_170734)	promoter-TSS (NM_170734)	-155	NM_001709	627	Hs.502182	NM_001143805	ENSG00000176697	BDNF	ANON2|BULN2	brain-derived neurotrophic factor	protein-coding
chr4.190662160.+	chr4	190662160	190662161	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199814	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr1.33815560.-	chr1	33815560	33815561	-	0	NA	promoter-TSS (NM_004427)	promoter-TSS (NM_004427)	61	NM_004427	1912	Hs.524271	NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2 (Drosophila)	protein-coding
chr1.28003921.-	chr1	28003921	28003922	-	0	NA	Intergenic	AluY|SINE|Alu	5197	NM_002038	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr11.7603260.-	chr11	7603260	7603261	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15157	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chrX.20694424.-	chrX	20694424	20694425	-	0	NA	Intergenic	AluY|SINE|Alu	409674	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr19.6337917.-	chr19	6337917	6337918	-	0	NA	Intergenic	AluY|SINE|Alu	4277	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr19.41868019.-	chr19	41868019	41868020	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1852	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr15.22804019.-	chr15	22804019	22804020	-	0	NA	Intergenic	AluSp|SINE|Alu	29376	NM_052903	114791	Hs.533898	NM_001102610	ENSG00000153575	TUBGCP5	GCP5	"tubulin, gamma complex associated protein 5"	protein-coding
chr17.8252955.+	chr17	8252955	8252956	+	0	NA	Intergenic	AluSq2|SINE|Alu	9767	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr20.13910571.-	chr20	13910571	13910572	-	0	NA	"intron (NR_073207, intron 3 of 18)"	AluSx|SINE|Alu	-60694	NR_073206	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding
chr10.59351232.+	chr10	59351232	59351233	+	0	NA	Intergenic	AluY|SINE|Alu	-286913	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr2.58008305.+	chr2	58008305	58008306	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265472	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr13.50125799.-	chr13	50125799	50125800	-	0	NA	"intron (NM_018191, intron 7 of 12)"	AluY|SINE|Alu	-33920	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr11.17160904.-	chr11	17160904	17160905	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30450	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr2.99438484.+	chr2	99438484	99438485	+	0	NA	"exon (NM_207362, exon 7 of 10)"	"exon (NM_207362, exon 7 of 10)"	-90895	NM_012214	11320	Hs.177576	NM_001160154	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A"	protein-coding
chr11.78394589.-	chr11	78394589	78394590	-	0	NA	"intron (NM_001098816, intron 29 of 33)"	L1HS|LINE|L1	108680	NM_024678	79731	Hs.503389	NM_001243251	ENSG00000137513	NARS2	SLM5|asnRS	"asparaginyl-tRNA synthetase 2, mitochondrial (putative)"	protein-coding
chrX.22158755.+	chrX	22158755	22158756	+	0	NA	"intron (NM_000444, intron 12 of 21)"	AluSz6|SINE|Alu	32345	NR_046639	100873942	Hs.633194	NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	miscRNA
chr2.38595160.+	chr2	38595160	38595161	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9272	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr2.20424072.+	chr2	20424072	20424073	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	855	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr8.3501031.+	chr8	3501031	3501032	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351297	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr10.35559793.-	chr10	35559793	35559794	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	-23840	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr16.341065.+	chr16	341065	341066	+	0	NA	"intron (NM_181050, intron 8 of 9)"	"intron (NM_181050, intron 8 of 9)"	7947	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr17.18585618.-	chr17	18585618	18585619	-	0	NA	promoter-TSS (NM_001145045)	promoter-TSS (NM_001145045)	46	NM_001145045	729288	Hs.534279	NR_024508	ENSG00000249459	ZNF286B	ZNF286C|ZNF286L|ZNF590	zinc finger protein 286B	protein-coding
chr13.20328832.-	chr13	20328832	20328833	-	0	NA	"intron (NR_044998, intron 3 of 7)"	AluSx|SINE|Alu	-28327	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr11.18743331.-	chr11	18743331	18743332	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4446	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr2.242500489.+	chr2	242500489	242500490	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1931	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr5.168300392.-	chr5	168300392	168300393	-	0	NA	"intron (NM_003062, intron 5 of 35)"	AluJb|SINE|Alu	105132	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	miscRNA
chr1.2157798.-	chr1	2157798	2157799	-	0	NA	Intergenic	AluJb|SINE|Alu	2336	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr12.48975192.-	chr12	48975192	48975193	-	0	NA	Intergenic	AluSx|SINE|Alu	11363	NM_002289	3906	Hs.72938	NM_002289	ENSG00000167531	LALBA	-	"lactalbumin, alpha-"	protein-coding
chr20.61449275.+	chr20	61449275	61449276	+	0	NA	"intron (NM_001853, intron 2 of 31)"	"intron (NM_001853, intron 2 of 31)"	861	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chr20.35737797.-	chr20	35737797	35737798	-	0	NA	"intron (NM_152503, intron 21 of 23)"	AluSq10|SINE|Alu	13387	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding
chr5.8479662.+	chr5	8479662	8479663	+	0	NA	Intergenic	AluY|SINE|Alu	18624	NR_039663	100616142		NR_039663	ENSG00000266471	MIR4458	-	microRNA 4458	miscRNA
chr1.52460308.-	chr1	52460308	52460309	-	0	NA	Intergenic	AluY|SINE|Alu	3872	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	"RAB3B, member RAS oncogene family"	protein-coding
chr19.54076851.-	chr19	54076851	54076852	-	0	NA	"intron (NM_001253798, intron 6 of 6)"	AluJb|SINE|Alu	-18290	NM_001079907	55422	Hs.185674	NM_001079906	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
chr22.49812477.-	chr22	49812477	49812478	-	0	NA	Intergenic	Intergenic	-238713	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr13.25096904.+	chr13	25096904	25096905	+	0	NA	Intergenic	AluY|SINE|Alu	-9956	NM_006437	143	Hs.117825	NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	"poly (ADP-ribose) polymerase family, member 4"	protein-coding
chr9.27541453.+	chr9	27541453	27541454	+	0	NA	Intergenic	AluY|SINE|Alu	-11603	NM_024761	79817	Hs.733701	NM_024761	ENSG00000120162	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
chr12.45135211.+	chr12	45135211	45135212	+	0	NA	"intron (NM_001145108, intron 9 of 19)"	L1PA4|LINE|L1	134233	NM_001145109	4753	Hs.505326	NM_001145107	ENSG00000184613	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
chr15.70300073.+	chr15	70300073	70300074	+	0	NA	Intergenic	MIRb|SINE|MIR	71734	NR_030714	693214		NR_030714		MIR629	MIRN629|hsa-mir-629	microRNA 629	miscRNA
chr14.39018145.-	chr14	39018145	39018146	-	0	NA	Intergenic	AluYa5|SINE|Alu	292570	NM_175060	161198	Hs.525307	NM_175060	ENSG00000176435	CLEC14A	C14orf27|CEG1|EGFR-5	"C-type lectin domain family 14, member A"	protein-coding
chr1.161879554.+	chr1	161879554	161879555	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114090	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr10.12344459.+	chr10	12344459	12344460	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47124	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chrX.122964914.-	chrX	122964914	122964915	-	0	NA	Intergenic	AluSp|SINE|Alu	28748	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr2.11411921.-	chr2	11411921	11411922	-	0	NA	"intron (NM_004850, intron 3 of 32)"	AluY|SINE|Alu	-72790	NM_004850	9475	Hs.681743	NM_004850		ROCK2	ROCK-II	"Rho-associated, coiled-coil containing protein kinase 2"	protein-coding
chr4.175612756.+	chr4	175612756	175612757	+	0	NA	"intron (NM_001042543, intron 5 of 8)"	SVA_D|Other|Other	137709	NM_001042543	8001	Hs.413099	NM_001042543	ENSG00000145451	GLRA3	-	"glycine receptor, alpha 3"	protein-coding
chr17.18785209.+	chr17	18785209	18785210	+	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	16427	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr19.58310417.+	chr19	58310417	58310418	+	0	NA	Intergenic	AluY|SINE|Alu	15864	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr6.45365137.+	chr6	45365137	45365138	+	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	-19349	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr7.1116554.-	chr7	1116554	1116555	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	9889	NM_001505	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr19.6307836.+	chr19	6307836	6307837	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25804	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr3.50701797.-	chr3	50701797	50701798	-	0	NA	Intergenic	AluY|SINE|Alu	10714	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr15.75701806.-	chr15	75701806	75701807	-	0	NA	"intron (NM_001145357, intron 8 of 20)"	"intron (NM_001145357, intron 8 of 20)"	40838	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr17.74118600.-	chr17	74118600	74118601	-	0	NA	Intergenic	Intergenic	18037	NR_040017	100507218	Hs.654866	NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	miscRNA
chr12.57177830.+	chr12	57177830	57177831	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20722	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr5.69056911.-	chr5	69056911	69056912	-	0	NA	Intergenic	AluYa5|SINE|Alu	50639	NR_027386	653188	Hs.654588	NR_027386	ENSG00000253203	GUSBP3	-	"glucuronidase, beta pseudogene 3"	pseudo
chr7.1286172.+	chr7	1286172	1286173	+	0	NA	Intergenic	CpG	13518	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr2.175862751.-	chr2	175862751	175862752	-	0	NA	"intron (NR_038133, intron 1 of 11)"	AluSz6|SINE|Alu	-7230	NM_001822	1123	Hs.380138	NM_001025201	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
chr17.29255141.-	chr17	29255141	29255142	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6387	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr6.96691751.-	chr6	96691751	96691752	-	0	NA	Intergenic	AluYk11|SINE|Alu	-227906	NM_006581	10690	Hs.49117	NM_006581		FUT9	Fuc-TIX	"fucosyltransferase 9 (alpha (1,3) fucosyltransferase)"	protein-coding
chr3.84566259.+	chr3	84566259	84566260	+	0	NA	Intergenic	AluY|SINE|Alu	352467	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr7.1889575.+	chr7	1889575	1889576	+	0	NA	"intron (NM_001013836, intron 18 of 18)"	"intron (NM_001013836, intron 18 of 18)"	-5686	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr16.3203709.-	chr16	3203709	3203710	-	0	NA	Intergenic	AluSg|SINE|Alu	-18575	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr15.41613151.-	chr15	41613151	41613152	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11668	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr1.78837733.-	chr1	78837733	78837734	-	0	NA	Intergenic	AluSx|SINE|Alu	118995	NM_001039585	5737	Hs.654365	NM_000959	ENSG00000122420	PTGFR	FP	prostaglandin F receptor (FP)	protein-coding
chr8.86747638.-	chr8	86747638	86747639	-	0	NA	promoter-TSS (NR_003594).4	promoter-TSS (NR_003594).4	889	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr21.34914896.-	chr21	34914896	34914897	-	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	-299	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr19.35850494.-	chr19	35850494	35850495	-	0	NA	"exon (NM_005304, exon 2 of 2)"	"exon (NM_005304, exon 2 of 2)"	-1006	NM_005304	2865	Hs.248055	NM_005304	ENSG00000185897	FFAR3	FFA3R|GPR41	free fatty acid receptor 3	protein-coding
chr10.28650999.-	chr10	28650999	28651000	-	0	NA	Intergenic	AluY|SINE|Alu	79932	NM_173496	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	"membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)"	protein-coding
chr22.24621476.+	chr22	24621476	24621477	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19634	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr11.100596569.-	chr11	100596569	100596570	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38162	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr2.1912008.+	chr2	1912008	1912009	+	0	NA	"intron (NM_015025, intron 13 of 24)"	"intron (NM_015025, intron 13 of 24)"	-163717	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr5.27408074.+	chr5	27408074	27408075	+	0	NA	Intergenic	AluY|SINE|Alu	-64325	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chrY.9930606.+	chrY	9930606	9930607	+	0	NA	Intergenic	Intergenic	182199	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr19.9879376.+	chr19	9879376	9879377	+	0	NA	promoter-TSS (NM_001077624)	promoter-TSS (NM_001077624)	34	NM_001077624	162993	Hs.665717	NM_001077624	ENSG00000196605	ZNF846	-	zinc finger protein 846	protein-coding
chr3.8721147.-	chr3	8721147	8721148	-	0	NA	Intergenic	Intergenic	27383	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr3.22099287.-	chr3	22099287	22099288	-	0	NA	Intergenic	AluSx|SINE|Alu	306471	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr1.855967.-	chr1	855967	855968	-	0	NA	Intergenic	Intergenic	1150	NR_026874	100130417	Hs.200644	NR_026874		LOC100130417	-	uncharacterized LOC100130417	miscRNA
chr15.41687830.-	chr15	41687830	41687831	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6828	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chrY.9930611.+	chrY	9930611	9930612	+	0	NA	Intergenic	CpG	182204	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chrX.47334408.+	chrX	47334408	47334409	+	0	NA	"intron (NM_153380, intron 1 of 4)"	AluYk12|SINE|Alu	7937	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr17.65029929.+	chr17	65029929	65029930	+	0	NA	TTS (NM_014405)	TTS (NM_014405)	-10723	NM_000727	786	Hs.147989	NM_000727	ENSG00000108878	CACNG1	CACNLG	"calcium channel, voltage-dependent, gamma subunit 1"	protein-coding
chr22.23539107.+	chr22	23539107	23539108	+	0	NA	"intron (NM_004327, intron 1 of 22)"	MER1B|DNA|hAT-Charlie	16555	NM_004327	613	Hs.715409	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	breakpoint cluster region	protein-coding
chr5.22207071.-	chr5	22207071	22207072	-	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	-64610	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chrX.142432465.-	chrX	142432465	142432466	-	0	NA	Intergenic	AluSx1|SINE|Alu	-172842	NM_001009609	139067	Hs.447320	NM_001009609	ENSG00000189252	SPANXN3	CT11.8|SPANX-N3	"SPANX family, member N3"	protein-coding
chr3.46709802.+	chr3	46709802	46709803	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9097	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr11.66887548.-	chr11	66887548	66887549	-	0	NA	"intron (NM_012308, intron 1 of 20)"	"intron (NM_012308, intron 1 of 20)"	-808	NR_027473	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr2.96149434.-	chr2	96149434	96149435	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1045	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr14.44877951.+	chr14	44877951	44877952	+	0	NA	Intergenic	AluY|SINE|Alu	98548	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr16.31103091.-	chr16	31103091	31103092	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	2961	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr2.87655693.-	chr2	87655693	87655694	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	99281	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr7.3124558.+	chr7	3124558	3124559	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41049	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr15.95399697.+	chr15	95399697	95399698	+	0	NA	"non-coding (NR_077061, exon 1 of 1)"	"non-coding (NR_077061, exon 1 of 1)"	1105	NR_077061	440311		NR_077061		LOC440311	-	glioma tumor suppressor candidate region gene 2 pseudogene	pseudo
chr13.45945041.+	chr13	45945041	45945042	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29561	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr19.3068350.-	chr19	3068350	3068351	-	0	NA	Intergenic	Intergenic	5386	NM_198969	166	Hs.515053	NM_001130	ENSG00000104964	AES	AES-1|AES-2|ESP1|GRG|GRG5|TLE5	amino-terminal enhancer of split	protein-coding
chr9.127980417.+	chr9	127980417	127980418	+	0	NA	"intron (NM_005833, intron 4 of 7)"	AluY|SINE|Alu	17555	NM_005833	10244	Hs.19012	NM_001174152	ENSG00000136933	RABEPK	RAB9P40|bA65N13.1|p40	Rab9 effector protein with kelch motifs	protein-coding
chr7.100231664.-	chr7	100231664	100231665	-	0	NA	promoter-TSS (NM_001206855)	promoter-TSS (NM_001206855)	391	NM_001206855	7036	Hs.544932	NM_001206855	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
chr22.51001335.-	chr22	51001335	51001336	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	7	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr18.14856562.+	chr18	14856562	14856563	+	0	NA	Intergenic	SVA_F|Other|Other	26397	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	miscRNA
chr20.57575092.-	chr20	57575092	57575093	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7217	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr1.154548824.+	chr1	154548824	154548825	+	0	NA	"3' UTR (NM_000748, exon 6 of 6)"	"3' UTR (NM_000748, exon 6 of 6)"	8567	NM_000748	1141	Hs.2306	NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	"cholinergic receptor, nicotinic, beta 2 (neuronal)"	protein-coding
chr7.5322970.-	chr7	5322970	5322971	-	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	-409	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr1.80177667.+	chr1	80177667	80177668	+	0	NA	Intergenic	AluSx|SINE|Alu	-705172	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr8.57184589.-	chr8	57184589	57184590	-	0	NA	Intergenic	SVA_D|Other|Other	-48652	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr8.86574385.+	chr8	86574385	86574386	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	357	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr14.21741104.+	chr14	21741104	21741105	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3466	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr1.25568269.-	chr1	25568269	25568270	-	0	NA	TTS (NM_020317)	TTS (NM_020317)	-5716	NM_020317	57035	Hs.695168	NM_207035	ENSG00000117616	C1orf63	DJ465N24.2.1|NPD014|RP3-465N24.4	chromosome 1 open reading frame 63	protein-coding
chr12.132313227.+	chr12	132313227	132313228	+	0	NA	"intron (NM_016155, intron 1 of 9)"	CpG	286	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr5.14460475.+	chr5	14460475	14460476	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121416	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr6.33500242.-	chr6	33500242	33500243	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47828	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr6.157734048.+	chr6	157734048	157734049	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11205	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr5.149676958.+	chr5	149676958	149676959	+	0	NA	"exon (NM_001012301, exon 2 of 2)"	"exon (NM_001012301, exon 2 of 2)"	5567	NM_001012301	340075	Hs.591252	NM_001012301	ENSG00000183876	ARSI	-	"arylsulfatase family, member I"	protein-coding
chr1.145075951.-	chr1	145075951	145075952	-	0	NA	"5' UTR (NM_022359, exon 1 of 7)"	"5' UTR (NM_022359, exon 1 of 7)"	-235	NM_022359	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr11.20177879.-	chr11	20177879	20177880	-	0	NA	"exon (NM_001029865, exon 4 of 4)"	"exon (NM_001029865, exon 4 of 4)"	-3991	NM_001029865	120237	Hs.558604	NM_001029865	ENSG00000109851	DBX1	-	developing brain homeobox 1	protein-coding
chr4.138974454.-	chr4	138974454	138974455	-	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	35714	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr9.16855840.-	chr9	16855840	16855841	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14946	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr3.196619098.+	chr3	196619098	196619099	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24371	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr20.57372801.-	chr20	57372801	57372802	-	0	NA	Intergenic	HAL1|LINE|L1	-19948	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr11.62530790.+	chr11	62530790	62530791	+	0	NA	"intron (NM_002696, intron 3 of 7)"	AluY|SINE|Alu	1779	NM_002696	5436	Hs.14839	NM_002696	ENSG00000168002	POLR2G	RPB19|RPB7|hRPB19|hsRPB7	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding
chr22.21983251.+	chr22	21983251	21983252	+	0	NA	"intron (NM_001017964, intron 4 of 4)"	CpG	1089	NM_001017964	150223	Hs.355952	NM_001017965	ENSG00000161179	YDJC	-	YdjC homolog (bacterial)	protein-coding
chr6.158438945.-	chr6	158438945	158438946	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-865	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr2.38703698.+	chr2	38703698	38703699	+	0	NA	Intergenic	Intergenic	-99266	NR_024191	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr4.184754924.+	chr4	184754924	184754925	+	0	NA	Intergenic	AluYa5|SINE|Alu	-71585	NM_020225	56977	Hs.696657	NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
chr13.113336464.-	chr13	113336464	113336465	-	0	NA	"intron (NM_207440, intron 2 of 2)"	AluY|SINE|Alu	8179	NM_015205	23250	Hs.29189	NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS	"ATPase, class VI, type 11A"	protein-coding
chr22.38336374.-	chr22	38336374	38336375	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13280	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr9.6790189.+	chr9	6790189	6790190	+	0	NA	"intron (NM_001146694, intron 1 of 20)"	AluYc|SINE|Alu	32548	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr3.185305609.+	chr3	185305609	185305610	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1578	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr15.41613500.-	chr15	41613500	41613501	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11319	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr2.11541671.-	chr2	11541671	11541672	-	0	NA	"intron (NR_047499, intron 2 of 2)"	AluY|SINE|Alu	-7564	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	miscRNA
chr5.32689675.-	chr5	32689675	32689676	-	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	21068	NM_001204376	4883	Hs.619466	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
chrY.13478067.+	chrY	13478067	13478068	+	0	NA	Intergenic	CpG	1055322	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr17.74707135.+	chr17	74707135	74707136	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-79	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr19.45530311.+	chr19	45530311	45530312	+	0	NA	"intron (NM_006509, intron 6 of 10)"	AluY|SINE|Alu	-11987	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr12.57417327.-	chr12	57417327	57417328	-	0	NA	Intergenic	AluSx3|SINE|Alu	6983	NR_033654	6866	Hs.9730	NM_001178054	ENSG00000166863	TAC3	HH10|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin 3	protein-coding
chr12.79439079.-	chr12	79439079	79439080	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	354	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr2.20424066.-	chr2	20424066	20424067	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-861	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr10.88411551.-	chr10	88411551	88411552	-	0	NA	Intergenic	Intergenic	2763	NM_001030015	94233	Hs.283922	NM_001030015	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
chr18.41408410.-	chr18	41408410	41408411	-	0	NA	Intergenic	AluSx3|SINE|Alu	550795	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr12.84357943.-	chr12	84357943	84357944	-	0	NA	Intergenic	AluY|SINE|Alu	-948665	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr6.158439005.-	chr6	158439005	158439006	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-925	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr22.49546122.+	chr22	49546122	49546123	+	0	NA	Intergenic	Intergenic	283540	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr15.68112102.-	chr15	68112102	68112103	-	0	NA	promoter-TSS (NM_001258024)	promoter-TSS (NM_001258024)	-60	NM_001258024	390598	Hs.451224	NM_001031807		SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
chr17.77810372.-	chr17	77810372	77810373	-	0	NA	"intron (NM_003655, intron 3 of 4)"	"intron (NM_003655, intron 3 of 4)"	-2841	NM_003655	8535	Hs.743401	NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
chr4.185174119.-	chr4	185174119	185174120	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35005	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr16.88677930.+	chr16	88677930	88677931	+	0	NA	"exon (NM_144604, exon 8 of 18)"	"exon (NM_144604, exon 8 of 18)"	-27071	NM_013278	27189	Hs.278911	NM_013278	ENSG00000124391	IL17C	CX2|IL-17C|IL-21	interleukin 17C	protein-coding
chr5.17924785.+	chr5	17924785	17924786	+	0	NA	Intergenic	AluY|SINE|Alu	-537366	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr2.45870591.+	chr2	45870591	45870592	+	0	NA	Intergenic	Intergenic	-8452	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	"protein kinase C, epsilon"	protein-coding
chr14.20670552.+	chr14	20670552	20670553	+	0	NA	Intergenic	AluSq2|SINE|Alu	5057	NM_001005503	390439	Hs.554582	NM_001005503	ENSG00000196832	OR11G2	OR14-34	"olfactory receptor, family 11, subfamily G, member 2"	protein-coding
chr3.36494788.-	chr3	36494788	36494789	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72691	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr10.23728419.-	chr10	23728419	23728420	-	0	NA	"exon (NM_001145373, exon 1 of 1)"	"exon (NM_001145373, exon 1 of 1)"	-221	NM_001145373	220213	Hs.499042	NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU domain containing 1	protein-coding
chr12.112620037.-	chr12	112620037	112620038	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56688	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr13.49550710.-	chr13	49550710	49550711	-	0	NA	"intron (NM_001079673, intron 1 of 25)"	CpG	-662	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr1.10040875.+	chr1	10040875	10040876	+	0	NA	"intron (NM_022787, intron 3 of 4)"	AluSc8|SINE|Alu	-16380	NM_052960	116362	Hs.422688	NM_052960	ENSG00000162444	RBP7	CRBP4|CRBPIV	"retinol binding protein 7, cellular"	protein-coding
chr10.135138765.-	chr10	135138765	135138766	-	0	NA	TTS (NM_015722)	TTS (NM_015722)	-11710	NM_015722	50632	Hs.148680	NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron-specific vesicular protein	protein-coding
chr19.4065765.-	chr19	4065765	4065766	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1051	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr4.1626645.+	chr4	1626645	1626646	+	0	NA	Intergenic	CpG	59073	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr7.1798878.-	chr7	1798878	1798879	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50080	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr10.112572140.+	chr10	112572140	112572141	+	0	NA	"exon (NM_001134363, exon 9 of 14)"	"exon (NM_001134363, exon 9 of 14)"	58522	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	miscRNA
chr16.70144508.+	chr16	70144508	70144509	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3021	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr13.72731944.+	chr13	72731944	72731945	+	0	NA	Intergenic	AluY|SINE|Alu	-290614	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr15.91370850.+	chr15	91370850	91370851	+	0	NA	Intergenic	AluSz|SINE|Alu	-41035	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr7.102089911.-	chr7	102089911	102089912	-	0	NA	"3' UTR (NM_001271818, exon 4 of 4)"	"3' UTR (NM_001271818, exon 4 of 4)"	-15410	NM_017621	54784	Hs.658598	NM_017621	ENSG00000160993	ALKBH4	ABH4	"alkB, alkylation repair homolog 4 (E. coli)"	protein-coding
chr1.54775676.-	chr1	54775676	54775677	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96303	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr17.4488399.-	chr17	4488399	4488400	-	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	-565	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr19.34394360.-	chr19	34394360	34394361	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106609	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr6.55774916.-	chr6	55774916	55774917	-	0	NA	Intergenic	SVA_D|Other|Other	34541	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr19.1136029.+	chr19	1136029	1136030	+	0	NA	"intron (NM_014963, intron 4 of 31)"	MLT1C|LTR|ERVL-MaLR	-3756	NM_001100122	22904	Hs.408708	NM_001100122	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
chr10.112124062.+	chr10	112124062	112124063	+	0	NA	Intergenic	Intergenic	-59355	NM_005871	10285	Hs.632093	NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
chr16.632144.-	chr16	632144	632145	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7213	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr21.47343980.+	chr21	47343980	47343981	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-57683	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr1.110881066.-	chr1	110881066	110881067	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-727	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr8.104851166.-	chr8	104851166	104851167	-	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	-19750	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr11.89400852.+	chr11	89400852	89400853	+	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	8387	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr9.138663314.+	chr9	138663314	138663315	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69283	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr18.41408395.-	chr18	41408395	41408396	-	0	NA	Intergenic	AluSx3|SINE|Alu	550780	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr7.95178732.-	chr7	95178732	95178733	-	0	NA	Intergenic	AluY|SINE|Alu	-47193	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr3.122695619.-	chr3	122695619	122695620	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	638	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr4.1358106.+	chr4	1358106	1358107	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	17002	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr12.49717304.+	chr12	49717304	49717305	+	0	NA	"intron (NM_005480, intron 1 of 14)"	"intron (NM_005480, intron 1 of 14)"	333	NM_001100620	10024	Hs.524399	NM_001100620	ENSG00000135451	TROAP	TASTIN	trophinin associated protein	protein-coding
chr1.171590673.+	chr1	171590673	171590674	+	0	NA	Intergenic	AluY|SINE|Alu	31100	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr2.101767274.+	chr2	101767274	101767275	+	0	NA	"intron (NM_001102426, intron 1 of 19)"	CpG	572	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	"TBC1 domain family, member 8 (with GRAM domain)"	protein-coding
chr12.33592608.+	chr12	33592608	33592609	+	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	146	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr22.38336402.-	chr22	38336402	38336403	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13252	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr1.151966630.+	chr1	151966630	151966631	+	0	NA	promoter-TSS (NM_002966)	promoter-TSS (NM_002966)	84	NM_002966	6281	Hs.143873	NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
chr6.12012487.+	chr6	12012487	12012488	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-237	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr1.171662966.+	chr1	171662966	171662967	+	0	NA	Intergenic	SVA_C|Other|Other	-41193	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr17.7308222.+	chr17	7308222	7308223	+	0	NA	promoter-TSS (NM_152766)	promoter-TSS (NM_152766)	-772	NM_152766	254863	Hs.730789	NM_152766	ENSG00000205544	TMEM256	C17orf61	transmembrane protein 256	protein-coding
chr1.2798169.-	chr1	2798169	2798170	-	0	NA	Intergenic	Intergenic	91939	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr6.168352182.-	chr6	168352182	168352183	-	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	-25437	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr11.16894114.-	chr11	16894114	16894115	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133966	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr10.134216433.-	chr10	134216433	134216434	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5731	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr4.83439459.+	chr4	83439459	83439460	+	0	NA	"intron (NM_001080506, intron 1 of 7)"	AluSx1|SINE|Alu	43667	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	-	transmembrane protein 150C	protein-coding
chr9.44780293.+	chr9	44780293	44780294	+	0	NA	Intergenic	AluSx|SINE|Alu	-209943	NR_027421	100132948	Hs.645763	NR_027421	ENSG00000154537	FAM27C	FAM27A3|bA374M1.5	"family with sequence similarity 27, member C"	miscRNA
chr10.16780303.-	chr10	16780303	16780304	-	0	NA	"intron (NM_012425, intron 7 of 8)"	AluYk4|SINE|Alu	-79150	NM_152724	6251	Hs.524161	NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
chr1.24513600.+	chr1	24513600	24513601	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	165	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr2.55647022.+	chr2	55647022	55647023	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	35	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr2.203038186.-	chr2	203038186	203038187	-	0	NA	"intron (NM_001277372, intron 15 of 21)"	AluSp|SINE|Alu	-65136	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr10.12344457.+	chr10	12344457	12344458	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47126	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr17.78559371.+	chr17	78559371	78559372	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40746	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr19.40938974.+	chr19	40938974	40938975	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7042	NM_013376	29950	Hs.269898	NM_013376		SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding
chr15.75494204.+	chr15	75494204	75494205	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-17	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr16.58810880.+	chr16	58810880	58810881	+	0	NA	Intergenic	AluSq4|SINE|Alu	-42634	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr10.20637960.-	chr10	20637960	20637961	-	0	NA	Intergenic	AluSg4|SINE|Alu	202939	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr16.53447751.+	chr16	53447751	53447752	+	0	NA	Intergenic	AluSx|SINE|Alu	-20600	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr9.105365737.-	chr9	105365737	105365738	-	0	NA	Intergenic	SVA_B|Other|Other	391856	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr5.177538232.-	chr5	177538232	177538233	-	0	NA	Intergenic	AluSp|SINE|Alu	2324	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr12.120959434.+	chr12	120959434	120959435	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7530	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr9.129229278.-	chr9	129229278	129229279	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56495	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr11.60609538.-	chr11	60609538	60609539	-	0	NA	"5' UTR (NM_024098, exon 1 of 4)"	"5' UTR (NM_024098, exon 1 of 4)"	-109	NM_024098	79080	Hs.4253	NM_024098	ENSG00000110104	CCDC86	-	coiled-coil domain containing 86	protein-coding
chr15.102520494.+	chr15	102520494	102520495	+	0	NA	Intergenic	TAR1|Satellite|telo	-1198	NR_051985	100288486	Hs.644359	NR_034090	ENSG00000248472	DDX11L9	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9	pseudo
chrX.132930114.+	chrX	132930114	132930115	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189559	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr7.150812722.-	chr7	150812722	150812723	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28896	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr3.128194240.-	chr3	128194240	128194241	-	0	NA	Intergenic	Intergenic	8149	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr1.8191566.+	chr1	8191566	8191567	+	0	NA	Intergenic	AluSx|SINE|Alu	-105173	NM_018948	54206	Hs.605445	NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
chr2.27070619.-	chr2	27070619	27070620	-	0	NA	promoter-TSS (NM_020134)	promoter-TSS (NM_020134)	350	NM_020134	56896	Hs.299315	NM_001253723	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|Ulip6	dihydropyrimidinase-like 5	protein-coding
chr11.113665996.+	chr11	113665996	113665997	+	0	NA	Intergenic	AluSx|SINE|Alu	15478	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr6.111924247.+	chr6	111924247	111924248	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3230	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr3.128194316.+	chr3	128194316	128194317	+	0	NA	Intergenic	Intergenic	-8225	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chrX.103014808.-	chrX	103014808	103014809	-	0	NA	Intergenic	AluY|SINE|Alu	16631	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr6.33811439.+	chr6	33811439	33811440	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39646	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr6.165122649.+	chr6	165122649	165122650	+	0	NA	Intergenic	Intergenic	600462	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr9.719243.+	chr9	719243	719244	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12437	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr16.88125298.+	chr16	88125298	88125299	+	0	NA	Intergenic	Intergenic	121674	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr6.35497064.-	chr6	35497064	35497065	-	0	NA	Intergenic	AluSp|SINE|Alu	16417	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
chr3.115377592.+	chr3	115377592	115377593	+	0	NA	"intron (NM_002045, intron 1 of 2)"	CpG	35441	NM_001130064	2596	Hs.134974	NM_001130064	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
chr22.44258092.-	chr22	44258092	44258093	-	0	NA	"intron (NM_014351, intron 1 of 6)"	CpG	-286	NM_014351	25830	Hs.189810	NM_014351	ENSG00000130540	SULT4A1	BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1	"sulfotransferase family 4A, member 1"	protein-coding
chr17.7745072.+	chr17	7745072	7745073	+	0	NA	"intron (NM_001080424, intron 1 of 21)"	CpG	1837	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine (K)-specific demethylase 6B	protein-coding
chr5.22207153.+	chr5	22207153	22207154	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64692	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr5.115953562.-	chr5	115953562	115953563	-	0	NA	Intergenic	AluY|SINE|Alu	43011	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr9.8858140.-	chr9	8858140	8858141	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124194	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr3.39425753.+	chr3	39425753	39425754	+	0	NA	"intron (NM_017875, intron 1 of 6)"	CpG	938	NM_017875	54977	Hs.369615	NM_017875	ENSG00000144659	SLC25A38	-	"solute carrier family 25, member 38"	protein-coding
chr9.90204118.-	chr9	90204118	90204119	-	0	NA	"intron (NM_004938, intron 2 of 25)"	AluSp|SINE|Alu	-91362	NM_004938	1612	Hs.693441	NM_004938	ENSG00000196730	DAPK1	DAPK	death-associated protein kinase 1	protein-coding
chr7.77315610.-	chr7	77315610	77315611	-	0	NA	"intron (NR_038361, intron 1 of 2)"	AluY|SINE|Alu	10133	NM_198467	222194	Hs.592289	NM_198467	ENSG00000187257	RSBN1L	-	round spermatid basic protein 1-like	protein-coding
chr5.150051445.+	chr5	150051445	150051446	+	0	NA	"exon (NM_133371, exon 5 of 7)"	"exon (NM_133371, exon 5 of 7)"	11042	NM_133371	91977	Hs.91626	NM_001122853	ENSG00000164591	MYOZ3	CS-3|CS3|FRP3	myozenin 3	protein-coding
chr13.26145031.+	chr13	26145031	26145032	+	0	NA	"intron (NM_016529, intron 17 of 36)"	"intron (NM_016529, intron 17 of 36)"	198822	NM_016529	51761	Hs.444957	NM_016529		ATP8A2	ATP|ATPIB|IB|ML-1	"ATPase, aminophospholipid transporter, class I, type 8A, member 2"	protein-coding
chr15.64369383.+	chr15	64369383	64369384	+	0	NA	"intron (NM_001014812, intron 2 of 3)"	AluSc8|SINE|Alu	16824	NM_032231	84191	Hs.439548	NM_001014812	ENSG00000166797	FAM96A	-	"family with sequence similarity 96, member A"	protein-coding
chr12.112407463.+	chr12	112407463	112407464	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43560	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr16.73461651.-	chr16	73461651	73461652	-	0	NA	Intergenic	AluSg|SINE|Alu	-40947	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr4.2878496.-	chr4	2878496	2878497	-	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	-32912	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr20.46019536.+	chr20	46019536	46019537	+	0	NA	Intergenic	AluY|SINE|Alu	-34062	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr2.33600903.-	chr2	33600903	33600904	-	0	NA	"intron (NM_000627, intron 27 of 29)"	AluY|SINE|Alu	60513	NM_170672	25780	Hs.143674	NM_001139488	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
chr9.99212741.-	chr9	99212741	99212742	-	0	NA	"exon (NM_014282, exon 1 of 8)"	"exon (NM_014282, exon 1 of 8)"	-327	NM_014282	22927	Hs.494567	NM_014282	ENSG00000130956	HABP4	IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
chr17.18179007.+	chr17	18179007	18179008	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14583	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr2.228632715.-	chr2	228632715	228632716	-	0	NA	Intergenic	MER20|DNA|hAT-Charlie	45843	NM_004591	6364	Hs.75498	NM_001130046	ENSG00000115009	CCL20	CKb4|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	chemokine (C-C motif) ligand 20	protein-coding
chr4.139919226.+	chr4	139919226	139919227	+	0	NA	Intergenic	AluY|SINE|Alu	-17717	NM_012118	25819	Hs.656047	NM_012118	ENSG00000151014	CCRN4L	CCR4L|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
chr1.114299623.+	chr1	114299623	114299624	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2154	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr3.164119695.+	chr3	164119695	164119696	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676588	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr7.45775938.+	chr7	45775938	45775939	+	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	32679	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr20.17960346.+	chr20	17960346	17960347	+	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	10584	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr5.176829676.-	chr5	176829676	176829677	-	0	NA	"exon (NM_000505, exon 13 of 14)"	"exon (NM_000505, exon 13 of 14)"	2039	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
chr3.48117712.+	chr3	48117712	48117713	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13057	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr8.86574406.+	chr8	86574406	86574407	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	336	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr16.9185107.-	chr16	9185107	9185108	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	430	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr3.48533700.-	chr3	48533700	48533701	-	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	-7783	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr4.81188408.+	chr4	81188408	81188409	+	0	NA	"intron (NM_033143, intron 1 of 1)"	"intron (NM_033143, intron 1 of 1)"	666	NM_033143	2250	Hs.37055	NM_004464	ENSG00000138675	FGF5	HBGF-5|Smag-82	fibroblast growth factor 5	protein-coding
chr22.44281154.-	chr22	44281154	44281155	-	0	NA	"intron (NM_138814, intron 6 of 8)"	"intron (NM_138814, intron 6 of 8)"	-6739	NM_001177675	150379	Hs.248086	NM_001177675	ENSG00000100341	PNPLA5	GS2L|dJ388M5|dJ388M5.4	patatin-like phospholipase domain containing 5	protein-coding
chr15.59685748.-	chr15	59685748	59685749	-	0	NA	Intergenic	AluSg4|SINE|Alu	20677	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
chr20.31565665.+	chr20	31565665	31565666	+	0	NA	Intergenic	Intergenic	26574	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr5.75699345.+	chr5	75699345	75699346	+	0	NA	"5' UTR (NM_006633, exon 1 of 36)"	"5' UTR (NM_006633, exon 1 of 36)"	196	NM_006633	10788	Hs.291030	NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
chr11.24538891.+	chr11	24538891	24538892	+	0	NA	"intron (NM_001252008, intron 1 of 11)"	AluY|SINE|Alu	20375	NM_001252008	338645	Hs.655032	NM_001009909	ENSG00000187398	LUZP2	KFSP2566|PRO6246	leucine zipper protein 2	protein-coding
chr12.49856916.+	chr12	49856916	49856917	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	73959	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr16.1179780.+	chr16	1179780	1179781	+	0	NA	Intergenic	CpG	-23461	NM_021098	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr8.7414152.+	chr8	7414152	7414153	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2474	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr7.5610938.+	chr7	5610938	5610939	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21498	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr16.69735138.+	chr16	69735138	69735139	+	0	NA	"3' UTR (NM_001113178, exon 15 of 15)"	"3' UTR (NM_001113178, exon 15 of 15)"	25395	NM_001025434	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	"NAD(P)H dehydrogenase, quinone 1"	protein-coding
chr10.133203423.-	chr10	133203423	133203424	-	0	NA	Intergenic	Intergenic	93439	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr7.56143767.-	chr7	56143767	56143768	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11850	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr6.2221731.+	chr6	2221731	2221732	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24137	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr18.70534380.-	chr18	70534380	70534381	-	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	-430	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr16.49892633.+	chr16	49892633	49892634	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-803	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr19.18856311.-	chr19	18856311	18856312	-	0	NA	"intron (NM_001098482, intron 3 of 14)"	"intron (NM_001098482, intron 3 of 14)"	-45803	NM_000095	1311	Hs.1584	NM_000095	ENSG00000105664	COMP	EDM1|EPD1|MED|PSACH|THBS5	cartilage oligomeric matrix protein	protein-coding
chr1.54775796.+	chr1	54775796	54775797	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96183	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr2.20424084.-	chr2	20424084	20424085	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-843	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr7.1575450.-	chr7	1575450	1575451	-	0	NA	"intron (NM_002360, intron 1 of 2)"	"intron (NM_002360, intron 1 of 2)"	-5082	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr9.26341252.-	chr9	26341252	26341253	-	0	NA	Intergenic	AluSq2|SINE|Alu	-274579	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr12.128310542.-	chr12	128310542	128310543	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	55620	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr15.41687837.-	chr15	41687837	41687838	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6821	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr16.3733095.-	chr16	3733095	3733096	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30155	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr19.33764725.+	chr19	33764725	33764726	+	0	NA	Intergenic	Intergenic	28705	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr9.131099677.+	chr9	131099677	131099678	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3162	NM_005094	10999	Hs.656699	NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	"solute carrier family 27 (fatty acid transporter), member 4"	protein-coding
chr7.936430.-	chr7	936430	936431	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20239	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr8.86544464.-	chr8	86544464	86544465	-	0	NA	Intergenic	AluSp|SINE|Alu	-23441	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr6.11537792.+	chr6	11537792	11537793	+	0	NA	promoter-TSS (NM_001100829)	promoter-TSS (NM_001100829)	-668	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
chr20.39978511.-	chr20	39978511	39978512	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8951	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr4.42658250.-	chr4	42658250	42658251	-	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	-872	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr4.78671597.-	chr4	78671597	78671598	-	0	NA	"intron (NM_144571, intron 5 of 11)"	AluY|SINE|Alu	-68947	NM_144571	246175	Hs.592519	NM_144571	ENSG00000138767	CNOT6L	CCR4b	"CCR4-NOT transcription complex, subunit 6-like"	protein-coding
chr6.25847029.+	chr6	25847029	25847030	+	0	NA	"intron (NM_001098486, intron 11 of 12)"	AluSx3|SINE|Alu	-14742	NM_005074	6568	Hs.205816	NM_005074	ENSG00000124568	SLC17A1	NAPI-1|NPT-1|NPT1	"solute carrier family 17 (sodium phosphate), member 1"	protein-coding
chr15.59370973.+	chr15	59370973	59370974	+	0	NA	"intron (NM_001270528, intron 7 of 13)"	AluSx1|SINE|Alu	-26311	NM_004701	9133	Hs.194698	NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
chr19.853185.+	chr19	853185	853186	+	0	NA	"intron (NM_001972, intron 2 of 4)"	CpG-12138	894	NM_001972	1991	Hs.99863	NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	"elastase, neutrophil expressed"	protein-coding
chr17.76250446.-	chr17	76250446	76250447	-	0	NA	Intergenic	CpG	-23055	NM_001204212	283999	Hs.632228	NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding
chr11.638975.+	chr11	638975	638976	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1670	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr19.2209751.+	chr19	2209751	2209752	+	0	NA	"intron (NM_032482, intron 12 of 27)"	"intron (NM_032482, intron 12 of 27)"	24397	NR_031596	100302283		NR_031596		MIR1227	MIRN1227|hsa-mir-1227	microRNA 1227	miscRNA
chr16.30960899.-	chr16	30960899	30960900	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-494	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr9.77401579.-	chr9	77401579	77401580	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100684	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr11.4030417.-	chr11	4030417	4030418	-	0	NA	"intron (NM_003156, intron 2 of 11)"	AluY|SINE|Alu	85507	NM_001033	6240	Hs.445705	NM_001033	ENSG00000167325	RRM1	R1|RIR1|RR1	ribonucleotide reductase M1	protein-coding
chr13.111268317.-	chr13	111268317	111268318	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-386	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr13.50177035.+	chr13	50177035	50177036	+	0	NA	Intergenic	AluY|SINE|Alu	-17316	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr6.392492.+	chr6	392492	392493	+	0	NA	"intron (NR_046000, intron 1 of 9)"	CpG	753	NM_002460	3662	Hs.401013	NM_001195286	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
chr8.28928630.+	chr8	28928630	28928631	+	0	NA	"intron (NM_015254, intron 39 of 39)"	"intron (NM_015254, intron 39 of 39)"	180405	NM_024567	79618	Hs.591836	NM_001135726	ENSG00000147421	HMBOX1	HNF1LA|PBHNF	homeobox containing 1	protein-coding
chrX.133031160.-	chrX	133031160	133031161	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-88513	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr9.138241197.+	chr9	138241197	138241198	+	0	NA	Intergenic	MIRc|SINE|MIR	6102	NM_173520	157927	Hs.559511	NM_173520	ENSG00000178243	C9orf62	-	chromosome 9 open reading frame 62	protein-coding
chr4.41107728.-	chr4	41107728	41107729	-	0	NA	"intron (NM_173075, intron 2 of 16)"	AluY|SINE|Alu	-108907	NM_001166050	323	Hs.479602	NM_001166050	ENSG00000163697	APBB2	FE65L|FE65L1	"amyloid beta (A4) precursor protein-binding, family B, member 2"	protein-coding
chr16.4835202.-	chr16	4835202	4835203	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3196	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr11.68704224.+	chr11	68704224	68704225	+	0	NA	"exon (NM_002180, exon 13 of 15)"	"exon (NM_002180, exon 13 of 15)"	32905	NM_002180	3508	Hs.503048	NM_002180	ENSG00000132740	IGHMBP2	CATF1|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7	immunoglobulin mu binding protein 2	protein-coding
chr7.100231670.-	chr7	100231670	100231671	-	0	NA	promoter-TSS (NM_001206855)	promoter-TSS (NM_001206855)	397	NM_001206855	7036	Hs.544932	NM_001206855	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
chr19.12151156.-	chr19	12151156	12151157	-	0	NA	Intergenic	AluY|SINE|Alu	4631	NM_001080411	163059	Hs.667776	NM_001080411	ENSG00000197647	ZNF433	-	zinc finger protein 433	protein-coding
chr8.30590125.+	chr8	30590125	30590126	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4639	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr20.62457900.+	chr20	62457900	62457901	+	0	NA	Intergenic	AluY|SINE|Alu	-21044	NM_025224	140685	Hs.585028	NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
chr6.17450416.-	chr6	17450416	17450417	-	0	NA	"intron (NM_006366, intron 3 of 12)"	AluY|SINE|Alu	-56680	NM_006366	10486	Hs.132902	NM_006366	ENSG00000112186	CAP2	-	"CAP, adenylate cyclase-associated protein, 2 (yeast)"	protein-coding
chr16.88387014.+	chr16	88387014	88387015	+	0	NA	Intergenic	L2b|LINE|L2	-106865	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr8.128328725.-	chr8	128328725	128328726	-	0	NA	Intergenic	Intergenic	99132	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr17.1226124.-	chr17	1226124	1226125	-	0	NA	Intergenic	AluSx|SINE|Alu	-43167	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr8.144363993.+	chr8	144363993	144363994	+	0	NA	Intergenic	LTR50|LTR|ERVL	-9566	NM_030895	79943	Hs.512740	NM_030895		ZNF696	-	zinc finger protein 696	protein-coding
chr7.2716321.-	chr7	2716321	2716322	-	0	NA	Intergenic	Intergenic	2842	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chrX.90204086.+	chrX	90204086	90204087	+	0	NA	Intergenic	AluY|SINE|Alu	-485511	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr1.203683375.-	chr1	203683375	203683376	-	0	NA	"exon (NM_001684, exon 15 of 21)"	"exon (NM_001684, exon 15 of 21)"	15334	NR_003019	677843	Hs.676135	NR_003019		SNORA77	ACA63	"small nucleolar RNA, H/ACA box 77"	snoRNA
chr12.12810263.-	chr12	12810263	12810264	-	0	NA	Intergenic	AluY|SINE|Alu	-38858	NM_006143	2842	Hs.657862	NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
chr11.4258918.+	chr11	4258918	4258919	+	0	NA	Intergenic	SVA_B|Other|Other	50536	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr7.156796995.+	chr7	156796995	156796996	+	0	NA	TTS (NM_005515)	TTS (NM_005515)	5134	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chrX.133328814.+	chrX	133328814	133328815	+	0	NA	Intergenic	AluSg|SINE|Alu	-24506	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr19.4065755.-	chr19	4065755	4065756	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1061	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr20.52741096.-	chr20	52741096	52741097	-	0	NA	Intergenic	AluSx1|SINE|Alu	-49420	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chrX.53123442.+	chrX	53123442	53123443	+	0	NA	Intergenic	CpG	11900	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.176292914.+	chr5	176292914	176292915	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33419	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr9.138065641.-	chr9	138065641	138065642	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7814	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr1.101786715.-	chr1	101786715	101786716	-	0	NA	Intergenic	AluY|SINE|Alu	-19736	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr5.54522508.-	chr5	54522508	54522509	-	0	NA	"intron (NM_001190787, intron 2 of 6)"	CpG-20700	-635	NM_001190787	345643	Hs.394578	NM_001190787	ENSG00000234602	MCIDAS	IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
chr7.45750429.-	chr7	45750429	45750430	-	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	-58188	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr17.30025172.-	chr17	30025172	30025173	-	0	NA	Intergenic	AluSg4|SINE|Alu	-122742	NR_029856	100126356		NR_029856	ENSG00000199187	MIR365B	MIR365-2|MIRN365-2|hsa-mir-365b	microRNA 365b	miscRNA
chr11.22214129.-	chr11	22214129	22214130	-	0	NA	promoter-TSS (NM_001142649)	promoter-TSS (NM_001142649)	593	NM_213599	203859	Hs.154329	NM_001142649	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
chr12.34492646.+	chr12	34492646	34492647	+	0	NA	Intergenic	GSATII|Satellite|centr	317430	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr9.135946995.+	chr9	135946995	135946996	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9630	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr2.178267557.-	chr2	178267557	178267558	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10086	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr5.178491502.-	chr5	178491502	178491503	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3895	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr8.100115792.+	chr8	100115792	100115793	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90298	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr22.46663715.+	chr22	46663715	46663716	+	0	NA	promoter-TSS (NM_017931)	promoter-TSS (NM_017931)	-146	NM_017931	55020	Hs.435832	NM_017931	ENSG00000075234	TTC38	-	tetratricopeptide repeat domain 38	protein-coding
chr9.95526670.+	chr9	95526670	95526671	+	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	413	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr13.62067807.+	chr13	62067807	62067808	+	0	NA	Intergenic	AluY|SINE|Alu	-78152	NM_022843	64881	Hs.391781	NM_022843	ENSG00000197991	PCDH20	PCDH13	protocadherin 20	protein-coding
chr18.29434789.+	chr18	29434789	29434790	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88302	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr12.117605427.+	chr12	117605427	117605428	+	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	22873	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr3.95669701.+	chr3	95669701	95669702	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267664	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr9.95476509.-	chr9	95476509	95476510	-	0	NA	"3' UTR (NM_001003800, exon 7 of 7)"	"3' UTR (NM_001003800, exon 7 of 7)"	43962	NM_022755	64768	Hs.713775	NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	"inositol 1,3,4,5,6-pentakisphosphate 2-kinase"	protein-coding
chr20.55247393.-	chr20	55247393	55247394	-	0	NA	Intergenic	AluSz6|SINE|Alu	-43035	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr4.8913679.+	chr4	8913679	8913680	+	0	NA	Intergenic	Intergenic	-37798	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr17.15464160.-	chr17	15464160	15464161	-	0	NA	"intron (NR_037924, intron 1 of 5)"	AluY|SINE|Alu	-2785	NR_037924	100533496	Hs.744260	NM_001204478	ENSG00000259024	TVP23C-CDRT4	FAM18B2-CDRT4	TVP23C-CDRT4 readthrough	protein-coding
chr2.19132834.-	chr2	19132834	19132835	-	0	NA	Intergenic	AluYk4|SINE|Alu	361988	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr7.25173779.-	chr7	25173779	25173780	-	0	NA	TTS (NM_138811)	TTS (NM_138811)	8799	NM_018947	54205	Hs.617193	NM_018947		CYCS	CYC|HCS|THC4	"cytochrome c, somatic"	protein-coding
chr17.70637576.-	chr17	70637576	70637577	-	0	NA	promoter-TSS (NR_033876)	promoter-TSS (NR_033876)	965	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	miscRNA
chr13.41345470.-	chr13	41345470	41345471	-	0	NA	promoter-TSS (NM_005830)	promoter-TSS (NM_005830)	123	NM_005830	10240	Hs.596607	NM_005830	ENSG00000102738	MRPS31	IMOGN38|MRP-S31|S31mt	mitochondrial ribosomal protein S31	protein-coding
chr1.246995874.-	chr1	246995874	246995875	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42955	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr9.35846388.-	chr9	35846388	35846389	-	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	13883	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr6.170491921.+	chr6	170491921	170491922	+	0	NA	Intergenic	CpG	79736	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr16.57323319.+	chr16	57323319	57323320	+	0	NA	Intergenic	AluY|SINE|Alu	-4735	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
chr12.8777860.-	chr12	8777860	8777861	-	0	NA	Intergenic	Intergenic	12418	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr16.88851914.+	chr16	88851914	88851915	+	0	NA	promoter-TSS (NM_001142864)	promoter-TSS (NM_001142864)	-542	NM_001142864	9780	Hs.592074	NM_001142864	ENSG00000103335	PIEZO1	FAM38A|Mib	piezo-type mechanosensitive ion channel component 1	protein-coding
chr17.1107247.+	chr17	1107247	1107248	+	0	NA	Intergenic	CpG	-16631	NM_001159746	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr16.85371285.+	chr16	85371285	85371286	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-31354	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr8.144512807.+	chr8	144512807	144512808	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-205	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr3.53225185.-	chr3	53225185	53225186	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29962	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr2.240402011.-	chr2	240402011	240402012	-	0	NA	Intergenic	Intergenic	79368	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr7.29605985.-	chr7	29605985	29605986	-	0	NA	"exon (NM_175887, exon 2 of 2)"	"exon (NM_175887, exon 2 of 2)"	-2558	NM_175887	222171	Hs.91109	NM_175887	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
chr10.99441505.-	chr10	99441505	99441506	-	0	NA	"intron (NM_021732, intron 1 of 2)"	AluYb8|SINE|Alu	-5510	NM_021732	60370	Hs.23918	NM_021732	ENSG00000119986	AVPI1	PP5395|RP11-548K23.7|VIP32|VIT32	arginine vasopressin-induced 1	protein-coding
chr11.369557.-	chr11	369557	369558	-	0	NA	promoter-TSS (NM_178537)	promoter-TSS (NM_178537)	238	NM_178537	338707	Hs.148074	NM_178537	ENSG00000182272	B4GALNT4	-	"beta-1,4-N-acetyl-galactosaminyl transferase 4"	protein-coding
chr19.1255633.-	chr19	1255633	1255634	-	0	NA	"exon (NM_177401, exon 7 of 8)"	"exon (NM_177401, exon 7 of 8)"	-7081	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr16.544892.-	chr16	544892	544893	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20042	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr2.43253944.+	chr2	43253944	43253945	+	0	NA	Intergenic	Intergenic	199801	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr12.8831003.+	chr12	8831003	8831004	+	0	NA	Intergenic	AluSp|SINE|Alu	-15570	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr19.4741376.-	chr19	4741376	4741377	-	0	NA	Intergenic	AluSx|SINE|Alu	17521	NM_139159	91039	Hs.515081	NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPRP-2|DPRP2	dipeptidyl-peptidase 9	protein-coding
chr8.144503740.+	chr8	144503740	144503741	+	0	NA	Intergenic	CpG	8862	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.58288627.+	chr16	58288627	58288628	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4787	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr3.44626341.+	chr3	44626341	44626342	+	0	NA	promoter-TSS (NM_173658)	promoter-TSS (NM_173658)	-115	NM_173658	285349	Hs.733134	NM_173658		ZNF660	-	zinc finger protein 660	protein-coding
chr14.24046440.+	chr14	24046440	24046441	+	0	NA	"exon (NM_001146028, exon 2 of 6)"	"exon (NM_001146028, exon 2 of 6)"	1569	NM_001146028	84502	Hs.597841	NM_001146028	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
chr11.134026097.+	chr11	134026097	134026098	+	0	NA	"intron (NM_015261, intron 32 of 34)"	"intron (NM_015261, intron 32 of 34)"	68329	NM_015261	23310	Hs.438550	NM_015261	ENSG00000151503	NCAPD3	CAP-D3|hCAP-D3|hHCP-6|hcp-6	"non-SMC condensin II complex, subunit D3"	protein-coding
chr3.64331895.+	chr3	64331895	64331896	+	0	NA	Intergenic	L2a|LINE|L2	-120764	NM_198859	166336	Hs.743295	NM_198859	ENSG00000163637	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
chr14.36549604.-	chr14	36549604	36549605	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9971	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr7.936487.-	chr7	936487	936488	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20296	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr2.241622524.-	chr2	241622524	241622525	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	207	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr8.17104685.-	chr8	17104685	17104686	-	0	NA	promoter-TSS (NM_013354)	promoter-TSS (NM_013354)	-284	NM_152415	137492	Hs.343873	NM_001145152	ENSG00000155975	VPS37A	HCRP1|PQBP2|SPG53	vacuolar protein sorting 37 homolog A (S. cerevisiae)	protein-coding
chr1.226350794.+	chr1	226350794	226350795	+	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	23629	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr7.4681972.+	chr7	4681972	4681973	+	0	NA	Intergenic	CpG	-39958	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr8.17013877.-	chr8	17013877	17013878	-	0	NA	promoter-TSS (NM_016353)	promoter-TSS (NM_016353)	-41	NM_016353	51201	Hs.744097	NM_016353		ZDHHC2	DHHC2|ZNF372	"zinc finger, DHHC-type containing 2"	protein-coding
chr3.46717863.+	chr3	46717863	46717864	+	0	NA	"exon (NM_001190707, exon 19 of 26)"	"exon (NM_001190707, exon 19 of 26)"	1036	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr2.70416473.-	chr2	70416473	70416474	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1678	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr22.22259598.-	chr22	22259598	22259599	-	0	NA	Intergenic	AluSq2|SINE|Alu	37628	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr12.75694215.+	chr12	75694215	75694216	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29621	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr4.160748520.-	chr4	160748520	160748521	-	0	NA	Intergenic	AluSx1|SINE|Alu	-559522	NM_014247	9693	Hs.113912	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chr16.1542178.+	chr16	1542178	1542179	+	0	NA	Intergenic	AluJb|SINE|Alu	-1174	NM_016111	9894	Hs.271044	NM_016111	ENSG00000100726	TELO2	CLK2|TEL2	"TEL2, telomere maintenance 2, homolog (S. cerevisiae)"	protein-coding
chr11.69580019.+	chr11	69580019	69580020	+	0	NA	Intergenic	AluSp|SINE|Alu	10152	NM_002007	2249	Hs.1755	NM_002007	ENSG00000075388	FGF4	HBGF-4|HST|HST-1|HSTF1|K-FGF|KFGF	fibroblast growth factor 4	protein-coding
chr19.11043338.+	chr19	11043338	11043339	+	0	NA	Intergenic	AluSg4|SINE|Alu	3914	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr2.126700691.-	chr2	126700691	126700692	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712820	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr2.44536158.+	chr2	44536158	44536159	+	0	NA	"intron (NM_000341, intron 7 of 9)"	AluY|SINE|Alu	33561	NM_000341	6519	Hs.112916	NM_000341		SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	"solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1"	protein-coding
chr17.15813811.+	chr17	15813811	15813812	+	0	NA	Intergenic	AluSx|SINE|Alu	-34420	NM_000676	136	Hs.167046	NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
chr9.12352808.+	chr9	12352808	12352809	+	0	NA	Intergenic	AluY|SINE|Alu	-340578	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr1.14702205.+	chr1	14702205	14702206	+	0	NA	Intergenic	AluY|SINE|Alu	-223008	NM_015209	23254	Hs.368823	NM_001017999	ENSG00000189337	KAZN	KAZ	"kazrin, periplakin interacting protein"	protein-coding
chr3.81714511.+	chr3	81714511	81714512	+	0	NA	"intron (NM_000158, intron 3 of 15)"	AluY|SINE|Alu	96439	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr6.170580874.+	chr6	170580874	170580875	+	0	NA	Intergenic	Intergenic	-9217	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr13.111268323.-	chr13	111268323	111268324	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-392	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr17.4105642.+	chr17	4105642	4105643	+	0	NA	"intron (NR_047571, intron 6 of 23)"	AluSz6|SINE|Alu	58727	NM_001254755	124936	Hs.513871	NM_001254755	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
chr22.43045620.+	chr22	43045620	43045621	+	0	NA	promoter-TSS (NM_000398)	promoter-TSS (NM_000398)	-215	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chr10.35559813.-	chr10	35559813	35559814	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	-23860	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr5.179167564.-	chr5	179167564	179167565	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7713	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr9.28773088.-	chr9	28773088	28773089	-	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	53785	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr7.2943505.+	chr7	2943505	2943506	+	0	NA	Intergenic	Intergenic	-59546	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr5.179383869.+	chr5	179383869	179383870	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-49013	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr5.52316812.+	chr5	52316812	52316813	+	0	NA	"intron (NR_073107, intron 1 of 28)"	AluSx|SINE|Alu	31656	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	"integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)"	protein-coding
chr7.5558100.+	chr7	5558100	5558101	+	0	NA	Intergenic	AluYc|SINE|Alu	-4701	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr2.43905220.-	chr2	43905220	43905221	-	0	NA	"intron (NM_172069, intron 2 of 29)"	SVA_D|Other|Other	1759	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
chr4.1721028.+	chr4	1721028	1721029	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	2056	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr11.17905668.-	chr11	17905668	17905669	-	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	-128969	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr9.14830618.+	chr9	14830618	14830619	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51087	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr10.122148854.+	chr10	122148854	122148855	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67612	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr4.174438927.+	chr4	174438927	174438928	+	0	NA	Intergenic	Intergenic	12451	NM_021973	9464	Hs.388245	NM_021973	ENSG00000164107	HAND2	DHAND2|Hed|Thing2|bHLHa26|dHand	heart and neural crest derivatives expressed 2	protein-coding
chr19.9311336.-	chr19	9311336	9311337	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14211	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr11.86934333.-	chr11	86934333	86934334	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-185447	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr1.18015513.+	chr1	18015513	18015514	+	0	NA	"intron (NM_018125, intron 27 of 28)"	MIRb|SINE|MIR	-66295	NM_030812	81569	Hs.2149	NM_030812	ENSG00000117148	ACTL8	CT57	actin-like 8	protein-coding
chr14.105618888.-	chr14	105618888	105618889	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16273	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr13.113768339.-	chr13	113768339	113768340	-	0	NA	"intron (NR_051961, intron 3 of 6)"	"intron (NR_051961, intron 3 of 6)"	-8237	NM_019616	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII (serum prothrombin conversion accelerator)	protein-coding
chr6.57322549.+	chr6	57322549	57322550	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140127	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr11.75491975.+	chr11	75491975	75491976	+	0	NA	"intron (NM_001253891, intron 1 of 6)"	"intron (NM_001253891, intron 1 of 6)"	12197	NM_032564	84649	Hs.129798	NM_001253891	ENSG00000062282	DGAT2	ARAT|GS1999FULL	diacylglycerol O-acyltransferase 2	protein-coding
chr6.132850762.-	chr6	132850762	132850763	-	0	NA	Intergenic	AluY|SINE|Alu	8665	NM_175057	134860	Hs.434116	NM_175057	ENSG00000237110	TAAR9	TA3|TAR3|TAR9|TRAR3	trace amine associated receptor 9 (gene/pseudogene)	protein-coding
chr17.29255147.-	chr17	29255147	29255148	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6393	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr6.20403782.+	chr6	20403782	20403783	+	0	NA	promoter-TSS (NM_001243076)	promoter-TSS (NM_001243076)	-128	NM_001243076	1871	Hs.703174	NM_001243076	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
chr2.240383726.-	chr2	240383726	240383727	-	0	NA	Intergenic	Intergenic	61083	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr1.43081165.+	chr1	43081165	43081166	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42883	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr17.26336755.-	chr17	26336755	26336756	-	0	NA	Intergenic	AluSz|SINE|Alu	32933	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr12.33592601.-	chr12	33592601	33592602	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-153	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr5.12186581.+	chr5	12186581	12186582	+	0	NA	Intergenic	AluYa5|SINE|Alu	-282471	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	"catenin (cadherin-associated protein), delta 2"	protein-coding
chr7.21370305.-	chr7	21370305	21370306	-	0	NA	Intergenic	MER52D|LTR|ERV1	97384	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr5.171395360.-	chr5	171395360	171395361	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38517	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr16.656872.+	chr16	656872	656873	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16699	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr17.12179842.+	chr17	12179842	12179843	+	0	NA	Intergenic	AluSx3|SINE|Alu	194626	NR_030613	100126313		NR_030613		MIR744	MIRN744|hsa-mir-744	microRNA 744	miscRNA
chr2.10163545.+	chr2	10163545	10163546	+	0	NA	Intergenic	Intergenic	-20137	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr2.73613426.-	chr2	73613426	73613427	-	0	NA	"intron (NM_015120, intron 1 of 22)"	CpG	-540	NM_015120	7840	Hs.184720	NM_015120	ENSG00000116127	ALMS1	ALSS	Alstrom syndrome 1	protein-coding
chr18.74224989.-	chr18	74224989	74224990	-	0	NA	Intergenic	AluY|SINE|Alu	15623	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LOC284276	-	uncharacterized LOC284276	miscRNA
chr9.130734371.-	chr9	130734371	130734372	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8441	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr2.101245801.-	chr2	101245801	101245802	-	0	NA	Intergenic	Intergenic	-66383	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.20424071.-	chr2	20424071	20424072	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-856	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr7.66607955.+	chr7	66607955	66607956	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28571	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr7.95234864.-	chr7	95234864	95234865	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8939	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr18.9386378.-	chr18	9386378	9386379	-	0	NA	"intron (NM_020648, intron 3 of 4)"	AluSx1|SINE|Alu	-51613	NM_020648	57045	Hs.514685	NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation homolog 1 (Drosophila)	protein-coding
chr13.31735128.-	chr13	31735128	31735129	-	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	-989	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr6.157734059.-	chr6	157734059	157734060	-	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	-11194	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr18.11959845.-	chr18	11959845	11959846	-	0	NA	Intergenic	SVA_D|Other|Other	21582	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr16.67520123.+	chr16	67520123	67520124	+	0	NA	Intergenic	Intergenic	-2407	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr4.513565.+	chr4	513565	513566	+	0	NA	"intron (NM_001127178, intron 6 of 12)"	"intron (NM_001127178, intron 6 of 12)"	20576	NM_001127178	54872	Hs.7099	NM_001127178	ENSG00000174227	PIGG	GPI7|LAS21|PRO4405|RLGS1930	"phosphatidylinositol glycan anchor biosynthesis, class G"	protein-coding
chr10.35559775.+	chr10	35559775	35559776	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23822	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr8.107613675.+	chr8	107613675	107613676	+	0	NA	"intron (NM_018002, intron 3 of 15)"	MLT1A|LTR|ERVL-MaLR	-56361	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr8.111696866.-	chr8	111696866	111696867	-	0	NA	Intergenic	AluY|SINE|Alu	709907	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr17.4926576.-	chr17	4926576	4926577	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12151	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr7.148820951.-	chr7	148820951	148820952	-	0	NA	"intron (NM_001001661, intron 1 of 3)"	AluY|SINE|Alu	-2487	NM_001001661	155054	Hs.31743	NM_001001661	ENSG00000204947	ZNF425	-	zinc finger protein 425	protein-coding
chr5.178491503.+	chr5	178491503	178491504	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	3896	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr2.71562007.+	chr2	71562007	71562008	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3122	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr9.37800561.-	chr9	37800561	37800562	-	0	NA	promoter-TSS (NM_024345)	promoter-TSS (NM_024345)	229	NM_024345	79269	Hs.118394	NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
chr4.252500.-	chr4	252500	252501	-	0	NA	Intergenic	AluSg|SINE|Alu	-37444	NM_001137608	654254	Hs.698668	NM_001137608		ZNF732	-	zinc finger protein 732	protein-coding
chr5.145549271.-	chr5	145549271	145549272	-	0	NA	"intron (NM_020117, intron 4 of 31)"	AluSq2|SINE|Alu	-13023	NM_020117	51520	Hs.432674	NM_020117	ENSG00000133706	LARS	HSPC192|LARS1|LEURS|LEUS|LRS|PIG44|RNTLS|hr025Cl	leucyl-tRNA synthetase	protein-coding
chr1.172502589.-	chr1	172502589	172502590	-	0	NA	"exon (NM_014283, exon 1 of 24)"	"exon (NM_014283, exon 1 of 24)"	-272	NM_016227	51430	Hs.743437	NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
chr2.47379028.+	chr2	47379028	47379029	+	0	NA	"intron (NM_173649, intron 2 of 4)"	AluY|SINE|Alu	3489	NM_173649	285051	Hs.531575	NM_001163561	ENSG00000239605	C2orf61	-	chromosome 2 open reading frame 61	protein-coding
chr20.4729572.-	chr20	4729572	4729573	-	0	NA	Intergenic	Intergenic	8258	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr5.271807.+	chr5	271807	271808	+	0	NA	promoter-TSS (NM_001267558)	promoter-TSS (NM_001267558)	71	NM_001267557	10016	Hs.50823	NM_001267556	ENSG00000249915	PDCD6	ALG-2|PEF1B	programmed cell death 6	protein-coding
chr21.31311331.+	chr21	31311331	31311332	+	0	NA	"intron (NM_175611, intron 1 of 15)"	"intron (NM_175611, intron 1 of 15)"	951	NM_000830	2897	Hs.664641	NM_000830	ENSG00000171189	GRIK1	EAA3|EEA3|GLR5|GLUR5|GluK1	"glutamate receptor, ionotropic, kainate 1"	protein-coding
chr19.17585873.+	chr19	17585873	17585874	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4573	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr11.66512930.-	chr11	66512930	66512931	-	0	NA	"intron (NR_048553, intron 1 of 14)"	"intron (NR_048553, intron 1 of 14)"	-723	NM_024650	79703	Hs.292088	NM_024650	ENSG00000173715	C11orf80	-	chromosome 11 open reading frame 80	protein-coding
chr7.148823275.+	chr7	148823275	148823276	+	0	NA	promoter-TSS (NM_020781)	promoter-TSS (NM_020781)	163	NM_001001661	155054	Hs.31743	NM_001001661	ENSG00000204947	ZNF425	-	zinc finger protein 425	protein-coding
chr8.11739661.-	chr8	11739661	11739662	-	0	NA	Intergenic	AluSx1|SINE|Alu	14015	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr1.92206179.+	chr1	92206179	92206180	+	0	NA	"intron (NR_036634, intron 5 of 17)"	AluSx1|SINE|Alu	145657	NM_003243	7049	Hs.735919	NM_001195683	ENSG00000069702	TGFBR3	BGCAN|betaglycan	"transforming growth factor, beta receptor III"	protein-coding
chr4.26862515.-	chr4	26862515	26862516	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-202	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr10.89094474.+	chr10	89094474	89094475	+	0	NA	"intron (NR_024397, intron 2 of 5)"	AluY|SINE|Alu	-7694	NR_029408	439994	Hs.651188	NR_029408		LOC439994	-	uncharacterized LOC439994	miscRNA
chr21.43109548.+	chr21	43109548	43109549	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10086	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr1.212953007.-	chr1	212953007	212953008	-	0	NA	"intron (NM_001042549, intron 4 of 6)"	SVA_D|Other|Other	-12132	NM_015471	25936	Hs.497692	NM_001042549		NSL1	C1orf48|MIS14	"NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr1.37980441.-	chr1	37980441	37980442	-	0	NA	promoter-TSS (NR_073090)	promoter-TSS (NR_073090)	21	NM_022756	64769	Hs.17118	NM_001270875		MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1-associated factor 6	protein-coding
chr11.64819785.+	chr11	64819785	64819786	+	0	NA	"intron (NM_005468, intron 8 of 17)"	L2c|LINE|L2	6224	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr9.131293127.-	chr9	131293127	131293128	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21710	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr2.242750637.+	chr2	242750637	242750638	+	0	NA	"intron (NM_001167600, intron 1 of 3)"	"intron (NM_001167600, intron 1 of 3)"	477	NM_001167601	129807	Hs.551747	NM_001167599	ENSG00000204099	NEU4	-	sialidase 4	protein-coding
chr17.80376633.-	chr17	80376633	80376634	-	0	NA	promoter-TSS (NM_024648)	promoter-TSS (NM_024648)	120	NM_175902	79701	Hs.187505	NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
chr8.35254001.-	chr8	35254001	35254002	-	0	NA	"intron (NM_080872, intron 1 of 16)"	"intron (NM_080872, intron 1 of 16)"	-161026	NM_080872	137970	Hs.238889	NM_080872	ENSG00000156687	UNC5D	PRO34692|Unc5h4	unc-5 homolog D (C. elegans)	protein-coding
chr7.5583852.-	chr7	5583852	5583853	-	0	NA	Intergenic	AluY|SINE|Alu	13620	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr1.28899369.-	chr1	28899369	28899370	-	0	NA	"intron (NM_017846, intron 8 of 8)"	AluY|SINE|Alu	-5965	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	"small nucleolar RNA, C/D box 99"	snoRNA
chr2.85691630.-	chr2	85691630	85691631	-	0	NA	Intergenic	AluSg7|SINE|Alu	-29712	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr12.112426261.-	chr12	112426261	112426262	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24762	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr20.19431525.+	chr20	19431525	19431526	+	0	NA	"intron (NM_020689, intron 2 of 16)"	AluSz|SINE|Alu	-166285	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	miscRNA
chr14.103988605.-	chr14	103988605	103988606	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-591	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr10.122216466.+	chr10	122216466	122216467	+	0	NA	promoter-TSS (NM_001030059)	promoter-TSS (NM_001030059)	0	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr16.84754600.+	chr16	84754600	84754601	+	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	21045	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr8.57184601.+	chr8	57184601	57184602	+	0	NA	Intergenic	SVA_D|Other|Other	48640	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr15.21904787.+	chr15	21904787	21904788	+	0	NA	Intergenic	Intergenic	35952	NR_027053	646214	Hs.510697	NR_027053		LOC646214	-	p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene	pseudo
chr11.64107701.+	chr11	64107701	64107702	+	0	NA	promoter-TSS (NM_032251)	promoter-TSS (NM_032251)	11	NM_032251	283234	Hs.98564	NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
chrX.39375762.+	chrX	39375762	39375763	+	0	NA	Intergenic	Intergenic	-189146	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	LOC286442	-	uncharacterized LOC286442	miscRNA
chr12.132293449.-	chr12	132293449	132293450	-	0	NA	Intergenic	CpG	19492	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr22.46303171.+	chr22	46303171	46303172	+	0	NA	Intergenic	Intergenic	69837	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr3.185305629.+	chr3	185305629	185305630	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1598	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr3.39425760.+	chr3	39425760	39425761	+	0	NA	"intron (NM_017875, intron 1 of 6)"	CpG	945	NM_017875	54977	Hs.369615	NM_017875	ENSG00000144659	SLC25A38	-	"solute carrier family 25, member 38"	protein-coding
chr12.62886305.+	chr12	62886305	62886306	+	0	NA	"intron (NM_015026, intron 2 of 34)"	AluYb8|SINE|Alu	25708	NM_015026	23041	Hs.389378	NM_015026	ENSG00000061987	MON2	-	MON2 homolog (S. cerevisiae)	protein-coding
chr22.51064801.-	chr22	51064801	51064802	-	0	NA	"intron (NM_001085428, intron 4 of 7)"	"intron (NM_001085428, intron 4 of 7)"	-1800	NM_000487	410	Hs.731715	NM_000487		ARSA	MLD	arylsulfatase A	protein-coding
chr11.4258894.+	chr11	4258894	4258895	+	0	NA	Intergenic	SVA_B|Other|Other	50512	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr17.57508070.+	chr17	57508070	57508071	+	0	NA	Intergenic	AluSx3|SINE|Alu	64626	NR_039882	100616204		NR_039882		MIR4729	-	microRNA 4729	miscRNA
chr20.57372815.-	chr20	57372815	57372816	-	0	NA	Intergenic	HAL1|LINE|L1	-19934	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr19.6307839.+	chr19	6307839	6307840	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25801	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr12.8777855.-	chr12	8777855	8777856	-	0	NA	Intergenic	Intergenic	12413	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr1.153961798.+	chr1	153961798	153961799	+	0	NA	Intergenic	AluY|SINE|Alu	-1441	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr2.241363399.-	chr2	241363399	241363400	-	0	NA	Intergenic	Intergenic	11716	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr1.151473970.+	chr1	151473970	151473971	+	0	NA	Intergenic	AluSx|SINE|Alu	-9892	NM_020770	57530	Hs.591464	NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
chr8.21767373.-	chr8	21767373	21767374	-	0	NA	"exon (NM_003974, exon 5 of 5)"	"exon (NM_003974, exon 5 of 5)"	-3832	NM_003974	9046	Hs.71215	NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	"docking protein 2, 56kDa"	protein-coding
chr8.609259.+	chr8	609259	609260	+	0	NA	Intergenic	Intergenic	71967	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr12.132116750.+	chr12	132116750	132116751	+	0	NA	Intergenic	L1ME1|LINE|L1	-78882	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr1.233601918.+	chr1	233601918	233601919	+	0	NA	Intergenic	LTR12E|LTR|ERV1	138404	NM_032435	84451	Hs.547779	NM_032435	ENSG00000143674	KIAA1804	MLK4|RP5-862P8.2|dJ862P8.3	mixed lineage kinase 4	protein-coding
chr19.11128243.-	chr19	11128243	11128244	-	0	NA	"intron (NM_001128845, intron 15 of 32)"	"intron (NM_001128845, intron 15 of 32)"	-33415	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr12.51785560.-	chr12	51785560	51785561	-	0	NA	promoter-TSS (NM_007210)	promoter-TSS (NM_007210)	360	NM_007210	11226	Hs.505575	NM_007210	ENSG00000139629	GALNT6	GALNAC-T6|GalNAcT6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)	protein-coding
chr2.27526307.-	chr2	27526307	27526308	-	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	-4823	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr1.32122090.+	chr1	32122090	32122091	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11252	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr7.13141812.+	chr7	13141812	13141813	+	0	NA	Intergenic	SVA_D|Other|Other	414901	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr12.67941939.-	chr12	67941939	67941940	-	0	NA	Intergenic	AluY|SINE|Alu	100573	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr2.240980345.-	chr2	240980345	240980346	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2054	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr6.88117996.+	chr6	88117996	88117997	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	306	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr1.25568272.-	chr1	25568272	25568273	-	0	NA	TTS (NM_020317)	TTS (NM_020317)	-5713	NM_020317	57035	Hs.695168	NM_207035	ENSG00000117616	C1orf63	DJ465N24.2.1|NPD014|RP3-465N24.4	chromosome 1 open reading frame 63	protein-coding
chr1.212973040.+	chr1	212973040	212973041	+	0	NA	"intron (NM_001146170, intron 4 of 8)"	AluSz6|SINE|Alu	7870	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
chr5.76691197.+	chr5	76691197	76691198	+	0	NA	"intron (NM_001029853, intron 9 of 20)"	AluY|SINE|Alu	97135	NM_018268	55255	Hs.482573	NM_018268		WDR41	-	WD repeat domain 41	protein-coding
chr20.58142651.+	chr20	58142651	58142652	+	0	NA	Intergenic	Intergenic	-9913	NM_001199505	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr12.132313897.-	chr12	132313897	132313898	-	0	NA	"intron (NM_016155, intron 1 of 9)"	CpG	-956	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr16.31932502.-	chr16	31932502	31932503	-	0	NA	Intergenic	AluY|SINE|Alu	-47423	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr11.73347313.+	chr11	73347313	73347314	+	0	NA	Intergenic	AluSq|SINE|Alu	-9910	NM_001130033	58473	Hs.445489	NM_001130033	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	"pleckstrin homology domain containing, family B (evectins) member 1"	protein-coding
chr6.112193987.-	chr6	112193987	112193988	-	0	NA	"intron (NM_002037, intron 1 of 13)"	CpG	-668	NM_002037	2534	Hs.664520	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	"FYN oncogene related to SRC, FGR, YES"	protein-coding
chr4.26862276.-	chr4	26862276	26862277	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	37	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr4.569273.-	chr4	569273	569274	-	0	NA	Intergenic	CpG	50090	NM_000283	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr2.158052725.+	chr2	158052725	158052726	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61615	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr20.60000316.+	chr20	60000316	60000317	+	0	NA	"intron (NM_001794, intron 2 of 15)"	"intron (NM_001794, intron 2 of 15)"	-74161	NM_001252338	1002	Hs.473231	NM_001252338		CDH4	CAD4|RCAD	"cadherin 4, type 1, R-cadherin (retinal)"	protein-coding
chr11.57267117.+	chr11	57267117	57267118	+	0	NA	"intron (NM_003627, intron 5 of 14)"	CpG	15241	NM_001198810	8501	Hs.735724	NM_001198810	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	"solute carrier family 43, member 1"	protein-coding
chr5.1067285.-	chr5	1067285	1067286	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4196	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr7.532201.-	chr7	532201	532202	-	0	NA	Intergenic	Intergenic	-27280	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr8.11739688.-	chr8	11739688	11739689	-	0	NA	Intergenic	AluSx1|SINE|Alu	14042	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr1.32122102.-	chr1	32122102	32122103	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11264	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr1.110881042.-	chr1	110881042	110881043	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-751	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chrX.134556412.-	chrX	134556412	134556413	-	0	NA	"non-coding (NR_024359, exon 1 of 2)"	"non-coding (NR_024359, exon 1 of 2)"	-544	NR_024359	399668	Hs.374414	NM_203306	ENSG00000178947	LINC00086	NCRNA00086	long intergenic non-protein coding RNA 86	miscRNA
chr8.57359108.-	chr8	57359108	57359109	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-174	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr19.1953238.-	chr19	1953238	1953239	-	0	NA	"intron (NR_033400, intron 2 of 2)"	"intron (NR_033400, intron 2 of 2)"	-1310	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	miscRNA
chr6.122006974.+	chr6	122006974	122006975	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250229	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr9.7934880.+	chr9	7934880	7934881	+	0	NA	Intergenic	AluY|SINE|Alu	-135081	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr12.120856943.-	chr12	120856943	120856944	-	0	NA	Intergenic	AluSz|SINE|Alu	18950	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr1.40953661.+	chr1	40953661	40953662	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10359	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr16.80278052.-	chr16	80278052	80278053	-	0	NA	Intergenic	SVA_F|Other|Other	296802	NM_130897	83657	Hs.98849	NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	"dynein, light chain, roadblock-type 2"	protein-coding
chr20.61885487.+	chr20	61885487	61885488	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	157	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr6.168219476.+	chr6	168219476	168219477	+	0	NA	Intergenic	AluSp|SINE|Alu	8000	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr12.12939856.+	chr12	12939856	12939857	+	0	NA	"exon (NM_030817, exon 2 of 2)"	"exon (NM_030817, exon 2 of 2)"	1315	NM_030817	81575	Hs.719938	NM_001130415	ENSG00000178878	APOLD1	VERGE	apolipoprotein L domain containing 1	protein-coding
chr10.252062.-	chr10	252062	252063	-	0	NA	"intron (NM_006624, intron 2 of 14)"	AluSx1|SINE|Alu	-26128	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr16.632146.+	chr16	632146	632147	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7211	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr4.3540633.-	chr4	3540633	3540634	-	0	NA	Intergenic	SVA_D|Other|Other	6409	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr8.609786.+	chr8	609786	609787	+	0	NA	Intergenic	Intergenic	71440	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr6.149638269.-	chr6	149638269	149638270	-	0	NA	Intergenic	CpG	1167	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr7.64493650.+	chr7	64493650	64493651	+	0	NA	Intergenic	SVA_C|Other|Other	-5082	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr9.38829836.-	chr9	38829836	38829837	-	0	NA	Intergenic	AluY|SINE|Alu	-208751	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr5.86116408.+	chr5	86116408	86116409	+	0	NA	Intergenic	AluSp|SINE|Alu	200094	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr1.39450200.-	chr1	39450200	39450201	-	0	NA	Intergenic	AluY|SINE|Alu	6716	NM_024595	79647	Hs.293563	NM_001136275	ENSG00000174574	AKIRIN1	C1orf108|RP11-781D11.2|STRF2	akirin 1	protein-coding
chr19.10408158.+	chr19	10408158	10408159	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7503	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr19.11878162.-	chr19	11878162	11878163	-	0	NA	"intron (NM_152355, intron 1 of 3)"	CpG	-347	NM_152355	126068	Hs.675132	NM_152355	ENSG00000197044	ZNF441	-	zinc finger protein 441	protein-coding
chr2.1562086.-	chr2	1562086	1562087	-	0	NA	Intergenic	AluY|SINE|Alu	-143906	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr7.138365524.+	chr7	138365524	138365525	+	0	NA	Intergenic	AluY|SINE|Alu	-1734	NM_001139456	136306	Hs.99414	NM_001139456	ENSG00000157703	SVOPL	-	SVOP-like	protein-coding
chr16.88851521.-	chr16	88851521	88851522	-	0	NA	promoter-TSS (NM_001142864)	promoter-TSS (NM_001142864)	149	NM_001142864	9780	Hs.592074	NM_001142864	ENSG00000103335	PIEZO1	FAM38A|Mib	piezo-type mechanosensitive ion channel component 1	protein-coding
chr2.86012662.-	chr2	86012662	86012663	-	0	NA	"intron (NM_032827, intron 2 of 2)"	"intron (NM_032827, intron 2 of 2)"	29591	NR_038888	284950	Hs.570227	NR_038888		LOC284950	-	uncharacterized LOC284950	miscRNA
chr15.91643212.+	chr15	91643212	91643213	+	0	NA	promoter-TSS (NM_014848)	promoter-TSS (NM_014848)	30	NM_001167580	9899	Hs.21754	NM_001167580	ENSG00000185518	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding
chr16.67520000.-	chr16	67520000	67520001	-	0	NA	Intergenic	AluY|SINE|Alu	2284	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr20.39978479.-	chr20	39978479	39978480	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8919	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr2.122434956.+	chr2	122434956	122434957	+	0	NA	"intron (NR_037857, intron 2 of 3)"	AluY|SINE|Alu	27391	NR_037856	254128	Hs.712685	NR_037856	ENSG00000236859	LOC254128	-	uncharacterized LOC254128	miscRNA
chr6.46742379.+	chr6	46742379	46742380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18715	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr11.45810273.+	chr11	45810273	45810274	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15350	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr8.42217732.+	chr8	42217732	42217733	+	0	NA	"intron (NM_002690, intron 9 of 13)"	AluSz|SINE|Alu	16942	NM_014420	27121	Hs.159311	NM_014420	ENSG00000104371	DKK4	DKK-4	dickkopf homolog 4 (Xenopus laevis)	protein-coding
chrX.69654666.+	chrX	69654666	69654667	+	0	NA	Intergenic	Intergenic	-10039	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr1.32731841.+	chr1	32731841	32731842	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7871	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr7.56421572.-	chr7	56421572	56421573	-	0	NA	Intergenic	AluJo|SINE|Alu	-94496	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr1.7739311.+	chr1	7739311	7739312	+	0	NA	"intron (NM_015215, intron 11 of 22)"	"intron (NM_015215, intron 11 of 22)"	-92018	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr6.79187852.-	chr6	79187852	79187853	-	0	NA	Intergenic	AluY|SINE|Alu	389409	NM_001010844	134728	Hs.656212	NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
chr12.112407443.+	chr12	112407443	112407444	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43580	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr8.123636945.+	chr8	123636945	123636946	+	0	NA	Intergenic	AluSx|SINE|Alu	-156956	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr17.4697360.+	chr17	4697360	4697361	+	0	NA	Intergenic	AluY|SINE|Alu	-2079	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr16.88708359.+	chr16	88708359	88708360	+	0	NA	Intergenic	AluY|SINE|Alu	3358	NM_013278	27189	Hs.278911	NM_013278	ENSG00000124391	IL17C	CX2|IL-17C|IL-21	interleukin 17C	protein-coding
chr11.71703020.-	chr11	71703020	71703021	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	6938	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr4.140201445.-	chr4	140201445	140201446	-	0	NA	promoter-TSS (NM_032623)	promoter-TSS (NM_032623)	-47	NM_032623	84709	Hs.710036	NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria-localized glutamic acid-rich protein	protein-coding
chr5.91213198.+	chr5	91213198	91213199	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-534049	NM_020801	57561	Hs.24684	NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
chr7.5322923.+	chr7	5322923	5322924	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	362	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr11.1122334.+	chr11	1122334	1122335	+	0	NA	Intergenic	Intergenic	47459	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr19.36654039.+	chr19	36654039	36654040	+	0	NA	Intergenic	AluY|SINE|Alu	-10268	NM_001864	1346	Hs.421621	NM_001864	ENSG00000161281	COX7A1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)	protein-coding
chr7.54614211.+	chr7	54614211	54614212	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4192	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr12.33592639.-	chr12	33592639	33592640	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-115	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr2.43707910.+	chr2	43707910	43707911	+	0	NA	"intron (NM_022065, intron 26 of 37)"	AluSx3|SINE|Alu	115203	NM_001083953	63892	Hs.369592	NM_001083953	ENSG00000115970	THADA	GITA	thyroid adenoma associated	protein-coding
chr9.10974545.-	chr9	10974545	10974546	-	0	NA	Intergenic	L1PBa|LINE|L1	361822	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.2518002.+	chr1	2518002	2518003	+	0	NA	promoter-TSS (NM_001195738)	promoter-TSS (NM_001195738)	103	NR_036638	127281	Hs.462033	NM_001195736	ENSG00000157870	FAM213B	C1orf93	"family with sequence similarity 213, member B"	protein-coding
chr10.28790425.-	chr10	28790425	28790426	-	0	NA	Intergenic	AluY|SINE|Alu	-30858	NR_033805	220906	Hs.403253	NR_033805		WAC-AS1	-	WAC antisense RNA 1 (head to head)	miscRNA
chr10.133203402.+	chr10	133203402	133203403	+	0	NA	Intergenic	Intergenic	-93418	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr15.25459158.+	chr15	25459158	25459159	+	0	NA	TTS (NR_003495)	TTS (NR_003495)	352	NR_003495	100036563		NR_003495	ENSG00000200398	SNORD115-24	HBII-52-24	"small nucleolar RNA, C/D box 115-24"	snoRNA
chr15.25149760.+	chr15	25149760	25149761	+	0	NA	"intron (NM_022807, intron 3 of 12)"	AluSx|SINE|Alu	48062	NM_022805	6638	Hs.743549	NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
chr2.240980307.+	chr2	240980307	240980308	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2092	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr22.18131953.+	chr22	18131953	18131954	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6475	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chrX.103014825.+	chrX	103014825	103014826	+	0	NA	Intergenic	AluY|SINE|Alu	-16614	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr2.58077710.+	chr2	58077710	58077711	+	0	NA	Intergenic	Intergenic	-196067	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr16.340998.+	chr16	340998	340999	+	0	NA	"intron (NM_181050, intron 8 of 9)"	"intron (NM_181050, intron 8 of 9)"	7880	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chrX.53123353.-	chrX	53123353	53123354	-	0	NA	Intergenic	CpG	-11811	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr3.42642491.+	chr3	42642491	42642492	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	81	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr1.97799200.-	chr1	97799200	97799201	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237721	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr7.75159462.+	chr7	75159462	75159463	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2009	NR_028059	5387	Hs.661055	XR_172481	ENSG00000127957	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	postmeiotic segregation increased 2 pseudogene 3	pseudo
chr19.15442458.-	chr19	15442458	15442459	-	0	NA	Intergenic	CpG	-48154	NM_005858	10270	Hs.743430	NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A kinase (PRKA) anchor protein 8	protein-coding
chr2.111367750.+	chr2	111367750	111367751	+	0	NA	Intergenic	Intergenic	-31441	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr5.6633934.+	chr5	6633934	6633935	+	0	NA	promoter-TSS (NM_017755)	promoter-TSS (NM_017755)	434	NM_001047	6715	Hs.552	NM_001047	ENSG00000145545	SRD5A1	S5AR 1	"steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)"	protein-coding
chrX.144903017.-	chrX	144903017	144903018	-	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	-151	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr5.70068538.+	chr5	70068538	70068539	+	0	NA	Intergenic	AluY|SINE|Alu	-127952	NM_021967	8293	Hs.726820	NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A (telomeric)	protein-coding
chr20.45557350.+	chr20	45557350	45557351	+	0	NA	"intron (NM_005244, intron 1 of 15)"	"intron (NM_005244, intron 1 of 15)"	34087	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr2.208576144.+	chr2	208576144	208576145	+	0	NA	promoter-TSS (NM_001142300)	promoter-TSS (NM_001142300)	-120	NM_001142300	151195	Hs.597952	NM_001142300	ENSG00000163249	CCNYL1	-	cyclin Y-like 1	protein-coding
chr4.185174121.+	chr4	185174121	185174122	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35007	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr21.47423137.-	chr21	47423137	47423138	-	0	NA	"intron (NM_001848, intron 34 of 34)"	CpG-17409	-21474	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr2.221058167.-	chr2	221058167	221058168	-	0	NA	Intergenic	MER52A|LTR|ERV1	286881	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr17.48630991.+	chr17	48630991	48630992	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6541	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr17.48207398.-	chr17	48207398	48207399	-	0	NA	promoter-TSS (NM_174920)	promoter-TSS (NM_174920)	152	NM_001257359	201191	Hs.567769	NM_001257359	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
chr7.1286199.-	chr7	1286199	1286200	-	0	NA	Intergenic	CpG	-13545	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr1.937265.+	chr1	937265	937266	+	0	NA	Intergenic	CpG-24	-1713	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr7.5396302.+	chr7	5396302	5396303	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66875	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr20.40246806.+	chr20	40246806	40246807	+	0	NA	"intron (NM_032221, intron 1 of 36)"	CpG	327	NM_032221	84181	Hs.740645	NM_032221	ENSG00000124177	CHD6	CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
chr8.120565241.+	chr8	120565241	120565242	+	0	NA	Intergenic	AluSc8|SINE|Alu	40007	NR_045555	5168	Hs.190977	NM_001040092	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
chr16.84879517.+	chr16	84879517	84879518	+	0	NA	"intron (NM_031476, intron 3 of 14)"	"intron (NM_031476, intron 3 of 14)"	25930	NM_031476	83716	Hs.617091	NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
chr1.228112740.+	chr1	228112740	228112741	+	0	NA	"intron (NM_003395, intron 2 of 3)"	"intron (NM_003395, intron 2 of 3)"	16644	NR_049806	100847072		NR_049806		MIR5008	-	microRNA 5008	miscRNA
chr1.52460247.+	chr1	52460247	52460248	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3811	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	"RAB3B, member RAS oncogene family"	protein-coding
chr2.235844075.-	chr2	235844075	235844076	-	0	NA	Intergenic	Intergenic	16553	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr16.69374055.+	chr16	69374055	69374056	+	0	NA	promoter-TSS (NM_032382)	promoter-TSS (NM_032382)	-529	NM_032382	84342	Hs.130849	NM_032382		COG8	CDG2H|DOR1	component of oligomeric golgi complex 8	protein-coding
chr12.105389619.+	chr12	105389619	105389620	+	0	NA	Intergenic	AluY|SINE|Alu	9521	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr1.39450162.+	chr1	39450162	39450163	+	0	NA	Intergenic	AluY|SINE|Alu	-6754	NM_024595	79647	Hs.293563	NM_001136275	ENSG00000174574	AKIRIN1	C1orf108|RP11-781D11.2|STRF2	akirin 1	protein-coding
chr19.58916201.-	chr19	58916201	58916202	-	0	NA	Intergenic	SVA_D|Other|Other	3862	NM_173548	201514	Hs.439551	NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
chrX.91037175.+	chrX	91037175	91037176	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2915	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr19.827901.-	chr19	827901	827902	-	0	NA	promoter-TSS (NM_001700)	promoter-TSS (NM_001700)	-70	NM_001700	566	Hs.72885	NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC	azurocidin 1	protein-coding
chr16.443663.+	chr16	443663	443664	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3529	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr6.12012465.+	chr6	12012465	12012466	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-259	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr20.58515240.-	chr20	58515240	58515241	-	0	NA	promoter-TSS (NM_022106)	promoter-TSS (NM_022106)	-112	NM_006242	5509	Hs.42215	NM_006242	ENSG00000132825	PPP1R3D	PPP1R6	"protein phosphatase 1, regulatory subunit 3D"	protein-coding
chr9.139609360.+	chr9	139609360	139609361	+	0	NA	"intron (NM_152421, intron 1 of 4)"	"intron (NM_152421, intron 1 of 4)"	2336	NM_152421	138311	Hs.741305	NM_152421		FAM69B	C9orf136|pp6977	"family with sequence similarity 69, member B"	protein-coding
chr19.3766734.-	chr19	3766734	3766735	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4069	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr9.77401539.-	chr9	77401539	77401540	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100724	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr16.2009564.-	chr16	2009564	2009565	-	0	NA	promoter-TSS (NM_004548)	promoter-TSS (NM_004548)	-47	NM_004548	4716	Hs.513266	NM_004548	ENSG00000140990	NDUFB10	PDSW	"NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa"	protein-coding
chrY.9930610.-	chrY	9930610	9930611	-	0	NA	Intergenic	CpG	-182203	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr13.103088643.-	chr13	103088643	103088644	-	0	NA	Intergenic	AluY|SINE|Alu	34519	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr1.28099693.+	chr1	28099693	28099694	+	0	NA	promoter-TSS (NM_177424)	promoter-TSS (NM_177424)	-1	NM_177424	23673	Hs.523855	NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
chrX.20094594.-	chrX	20094594	20094595	-	0	NA	"intron (NM_152780, intron 1 of 15)"	AluSq|SINE|Alu	-40162	NM_001168467	256714	Hs.127951	NM_001168465	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
chr19.3766704.-	chr19	3766704	3766705	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4039	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr7.1592369.-	chr7	1592369	1592370	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	-3697	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr17.79427777.-	chr17	79427777	79427778	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9563	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chrX.21676537.-	chrX	21676537	21676538	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	89	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr3.60485397.+	chr3	60485397	60485398	+	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	751736	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr14.105158908.+	chr14	105158908	105158909	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2965	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr2.90481147.-	chr2	90481147	90481148	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1366828	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr11.916044.-	chr11	916044	916045	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	986	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr1.24829830.+	chr1	24829830	24829831	+	0	NA	promoter-TSS (NR_045407)	promoter-TSS (NR_045407)	443	NM_001251981	11123	Hs.737226	NM_001251977	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
chr17.217658.-	chr17	217658	217659	-	0	NA	Intergenic	L1MEg|LINE|L1	15025	NM_006987	9501	Hs.651925	NM_001190411	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A-like (without C2 domains)	protein-coding
chr7.21498086.+	chr7	21498086	21498087	+	0	NA	"intron (NM_003112, intron 3 of 5)"	AluSx1|SINE|Alu	30397	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr21.45243659.-	chr21	45243659	45243660	-	0	NA	Intergenic	Intergenic	11211	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr3.129048088.-	chr3	129048088	129048089	-	0	NA	Intergenic	AluY|SINE|Alu	12968	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr14.105158929.-	chr14	105158929	105158930	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2986	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr14.23564098.-	chr14	23564098	23564099	-	0	NA	promoter-TSS (NM_017924)	promoter-TSS (NM_017924)	585	NM_017924	55017	Hs.735365	NM_017924	ENSG00000179933	C14orf119	-	chromosome 14 open reading frame 119	protein-coding
chr2.1554812.+	chr2	1554812	1554813	+	0	NA	Intergenic	Intergenic	136632	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr7.157234947.-	chr7	157234947	157234948	-	0	NA	Intergenic	CpG	-105236	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr1.21893075.+	chr1	21893075	21893076	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57217	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chrX.27921077.+	chrX	27921077	27921078	+	0	NA	Intergenic	AluY|SINE|Alu	78489	NM_001017930	139425	Hs.447365	NM_001017930	ENSG00000226372	DCAF8L1	WDR42B	DDB1 and CUL4 associated factor 8-like 1	protein-coding
chr9.108210416.+	chr9	108210416	108210417	+	0	NA	promoter-TSS (NM_207647)	promoter-TSS (NM_207647)	91	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr20.13654588.-	chr20	13654588	13654589	-	0	NA	Intergenic	AluY|SINE|Alu	35005	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr1.59041968.+	chr1	59041968	59041969	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1198	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chrX.42144944.-	chrX	42144944	42144945	-	0	NA	Intergenic	SVA_D|Other|Other	362657	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr3.149374846.+	chr3	149374846	149374847	+	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	966	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr8.26241080.-	chr8	26241080	26241081	-	0	NA	"intron (NM_004331, intron 1 of 5)"	"intron (NM_004331, intron 1 of 5)"	-557	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr1.32731837.+	chr1	32731837	32731838	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7875	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr1.15772168.-	chr1	15772168	15772169	-	0	NA	"exon (NM_007272, exon 7 of 8)"	"exon (NM_007272, exon 7 of 8)"	-7230	NM_007272	11330	Hs.631869	NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C (caldecrin)	protein-coding
chr19.2424657.-	chr19	2424657	2424658	-	0	NA	TTS (NM_012458)	TTS (NM_012458)	-3218	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr7.13141833.+	chr7	13141833	13141834	+	0	NA	Intergenic	SVA_D|Other|Other	414922	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr3.6318001.+	chr3	6318001	6318002	+	0	NA	Intergenic	AluY|SINE|Alu	-584801	NM_181874	2917	Hs.660131	NM_000844	ENSG00000196277	GRM7	GLUR7|GPRC1G|MGLU7|MGLUR7	"glutamate receptor, metabotropic 7"	protein-coding
chr8.26241052.-	chr8	26241052	26241053	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-529	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr14.55349953.+	chr14	55349953	55349954	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-5042	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr16.600126.+	chr16	600126	600127	+	0	NA	"intron (NM_005632, intron 7 of 13)"	"intron (NM_005632, intron 7 of 13)"	6849	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	-	microRNA 3176	miscRNA
chr17.4697387.-	chr17	4697387	4697388	-	0	NA	Intergenic	AluY|SINE|Alu	2052	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr22.49969180.-	chr22	49969180	49969181	-	0	NA	Intergenic	Intergenic	-82010	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr14.20778651.+	chr14	20778651	20778652	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4498	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr11.120384424.+	chr11	120384424	120384425	+	0	NA	Intergenic	Intergenic	-146604	NM_014619	2900	Hs.568901	NM_014619		GRIK4	EAA1|GRIK|GluK4|KA1	"glutamate receptor, ionotropic, kainate 4"	protein-coding
chr11.73347220.+	chr11	73347220	73347221	+	0	NA	Intergenic	AluSq|SINE|Alu	-10003	NM_001130033	58473	Hs.445489	NM_001130033	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	"pleckstrin homology domain containing, family B (evectins) member 1"	protein-coding
chr4.146648846.-	chr4	146648846	146648847	-	0	NA	"intron (NM_001080531, intron 3 of 5)"	AluSq|SINE|Alu	-47490	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
chr12.6866149.+	chr12	6866149	6866150	+	0	NA	Intergenic	AluSp|SINE|Alu	-3513	NR_026581	8079	Hs.524214	NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
chr8.14459351.+	chr8	14459351	14459352	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	251668	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr12.80701188.-	chr12	80701188	80701189	-	0	NA	"intron (NM_173591, intron 28 of 57)"	SVA_D|Other|Other	-97955	NM_173591	283310	Hs.723594	NM_173591	ENSG00000165899	OTOGL	C12orf64|DFNB84B	otogelin-like	protein-coding
chr13.111268313.-	chr13	111268313	111268314	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-382	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr16.88182990.-	chr16	88182990	88182991	-	0	NA	Intergenic	Intergenic	-179366	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr1.32122113.-	chr1	32122113	32122114	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11275	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr9.120176534.-	chr9	120176534	120176535	-	0	NA	"intron (NM_014010, intron 1 of 21)"	CpG	-783	NM_014010	23245	Hs.601562	NM_001184734	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
chrX.99100682.-	chrX	99100682	99100683	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94159	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr7.77452588.-	chr7	77452588	77452589	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16859	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr3.117326556.+	chr3	117326556	117326557	+	0	NA	Intergenic	Intergenic	897921	NR_015391	285194	Hs.120364	NR_015391		LSAMP-AS3	LSAMP-AS1|NCRNA00295	LSAMP antisense RNA 3	miscRNA
chr19.48814152.-	chr19	48814152	48814153	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9180	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr12.131551520.-	chr12	131551520	131551521	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98036	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr3.42630481.-	chr3	42630481	42630482	-	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	1817	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr21.46737198.+	chr21	46737198	46737199	+	0	NA	Intergenic	Intergenic	29231	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr1.200941591.-	chr1	200941591	200941592	-	0	NA	"3' UTR (NM_001252102, exon 35 of 35)"	"3' UTR (NM_001252102, exon 35 of 35)"	-51237	NM_001252103	23046	Hs.169182	NM_001252100	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
chr1.236252182.+	chr1	236252182	236252183	+	0	NA	Intergenic	AluY|SINE|Alu	-23701	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr2.134028758.+	chr2	134028758	134028759	+	0	NA	"intron (NM_207363, intron 4 of 19)"	AluY|SINE|Alu	297273	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
chr3.53118165.-	chr3	53118165	53118166	-	0	NA	Intergenic	Intergenic	38076	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr22.25960703.+	chr22	25960703	25960704	+	0	NA	promoter-TSS (NM_005160)	promoter-TSS (NM_005160)	-158	NM_005160	157	Hs.657494	NM_005160		ADRBK2	BARK2|GRK3	"adrenergic, beta, receptor kinase 2"	protein-coding
chr4.177146924.-	chr4	177146924	177146925	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30102	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr2.241541400.+	chr2	241541400	241541401	+	0	NA	Intergenic	Intergenic	-3425	NM_001195382	2859	Hs.112218	NM_001195381	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
chr9.131121763.+	chr9	131121763	131121764	+	0	NA	"intron (NM_005094, intron 12 of 12)"	AluSx1|SINE|Alu	-11835	NM_030914	81605	Hs.495229	NM_001135947		URM1	C9orf74	ubiquitin related modifier 1	protein-coding
chr12.133328230.-	chr12	133328230	133328231	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10221	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr1.32731815.+	chr1	32731815	32731816	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7897	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr13.21872285.-	chr13	21872285	21872286	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-21	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr11.77200935.-	chr11	77200935	77200936	-	0	NA	Intergenic	SVA_D|Other|Other	15827	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr9.36596629.-	chr9	36596629	36596630	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23770	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr6.93408716.+	chr6	93408716	93408717	+	0	NA	Intergenic	AluY|SINE|Alu	720584	NM_004440	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK3|HEK11	EPH receptor A7	protein-coding
chr7.66064185.+	chr7	66064185	66064186	+	0	NA	Intergenic	AluY|SINE|Alu	-20687	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr9.137200945.-	chr9	137200945	137200946	-	0	NA	Intergenic	Intergenic	17371	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chrX.32812448.-	chrX	32812448	32812449	-	0	NA	"intron (NM_000109, intron 7 of 78)"	AluY|SINE|Alu	-225869	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr2.65087248.+	chr2	65087248	65087249	+	0	NA	Intergenic	Intergenic	72333	NR_036586	400958	Hs.591565	NR_036586		LOC400958	-	uncharacterized LOC400958	miscRNA
chrX.22158759.+	chrX	22158759	22158760	+	0	NA	"intron (NM_000444, intron 12 of 21)"	AluSz6|SINE|Alu	32341	NR_046639	100873942	Hs.633194	NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	miscRNA
chr3.49297065.+	chr3	49297065	49297066	+	0	NA	Intergenic	AluY|SINE|Alu	-14488	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	miscRNA
chr17.4697351.-	chr17	4697351	4697352	-	0	NA	Intergenic	AluY|SINE|Alu	2088	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr3.195498023.-	chr3	195498023	195498024	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40821	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr1.148928238.-	chr1	148928238	148928239	-	0	NA	promoter-TSS (NR_027355)	promoter-TSS (NR_027355)	48	NR_027356	645166	Hs.744183	NR_027355	ENSG00000232527	LOC645166	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr2.68031672.+	chr2	68031672	68031673	+	0	NA	Intergenic	AluY|SINE|Alu	258487	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chrM.6540.+	chrM	6540	6541	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.21350629.+	chr1	21350629	21350630	+	0	NA	"intron (NM_001198803, intron 6 of 14)"	SVA_F|Other|Other	87247	NM_003760	8672	Hs.732241	NM_001198801	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	"eukaryotic translation initiation factor 4 gamma, 3"	protein-coding
chr2.208031281.-	chr2	208031281	208031282	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-299	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr18.74505085.+	chr18	74505085	74505086	+	0	NA	Intergenic	Intergenic	29166	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr14.55349956.-	chr14	55349956	55349957	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5045	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr5.41712460.+	chr5	41712460	41712461	+	0	NA	Intergenic	AluY|SINE|Alu	158331	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA transferase 1	protein-coding
chr16.17658403.+	chr16	17658403	17658404	+	0	NA	Intergenic	AluJb|SINE|Alu	-93665	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr2.38595167.-	chr2	38595167	38595168	-	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	-9265	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr7.150865500.-	chr7	150865500	150865501	-	0	NA	promoter-TSS (NM_001098834)	promoter-TSS (NM_001098834)	633	NM_001098834	2636	Hs.647114	NM_001098834	ENSG00000164900	GBX1	-	gastrulation brain homeobox 1	protein-coding
chr2.38595147.+	chr2	38595147	38595148	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9285	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr22.43238145.-	chr22	43238145	43238146	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15263	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr14.87514439.+	chr14	87514439	87514440	+	0	NA	Intergenic	AluY|SINE|Alu	142317	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LOC283585	-	uncharacterized LOC283585	miscRNA
chr10.104255219.+	chr10	104255219	104255220	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7293	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr10.324414.-	chr10	324414	324415	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98480	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr20.46019508.+	chr20	46019508	46019509	+	0	NA	Intergenic	AluY|SINE|Alu	-34034	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr11.76156233.-	chr11	76156233	76156234	-	0	NA	"intron (NM_020193, intron 1 of 20)"	CpG	-164	NM_020193	56946	Hs.352588	NM_020193	ENSG00000158636	C11orf30	EMSY	chromosome 11 open reading frame 30	protein-coding
chr19.11043339.+	chr19	11043339	11043340	+	0	NA	Intergenic	AluSg4|SINE|Alu	3915	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr19.39998288.-	chr19	39998288	39998289	-	0	NA	"intron (NM_203486, intron 7 of 8)"	CpG-13707	7465	NM_182704	348303	Hs.319284	NM_182704	ENSG00000186838	SELV	-	selenoprotein V	protein-coding
chr3.45348434.+	chr3	45348434	45348435	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80620	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr20.61885860.-	chr20	61885860	61885861	-	0	NA	promoter-TSS (NM_152864)	promoter-TSS (NM_152864)	-32	NM_152864	128414	Hs.46627	NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	Na+/K+ transporting ATPase interacting 4	protein-coding
chr5.17207824.-	chr5	17207824	17207825	-	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	9108	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr17.74534126.-	chr17	74534126	74534127	-	0	NA	promoter-TSS (NM_134268)	promoter-TSS (NM_134268)	139	NM_134268	114757	Hs.95120	NM_134268	ENSG00000161544	CYGB	HGB|STAP	cytoglobin	protein-coding
chr1.65991626.-	chr1	65991626	65991627	-	0	NA	"intron (NM_001198688, intron 1 of 18)"	CpG	-254	NM_001198689	3953	Hs.723178	NM_001003679	ENSG00000116678	LEPR	CD295|LEP-R|LEPRD|OB-R|OBR	leptin receptor	protein-coding
chr9.134449889.-	chr9	134449889	134449890	-	0	NA	Intergenic	AluSx1|SINE|Alu	43227	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr17.42869168.+	chr17	42869168	42869169	+	0	NA	Intergenic	AluY|SINE|Alu	32600	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chrX.53467767.-	chrX	53467767	53467768	-	0	NA	Intergenic	Intergenic	6444	NM_004493	3028	Hs.171280	NM_001037811	ENSG00000072506	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding
chr3.93689440.+	chr3	93689440	93689441	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3494	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr16.67519975.+	chr16	67519975	67519976	+	0	NA	Intergenic	AluY|SINE|Alu	-2259	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr2.10424791.+	chr2	10424791	10424792	+	0	NA	Intergenic	Intergenic	-18239	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr10.59080727.-	chr10	59080727	59080728	-	0	NA	Intergenic	AluY|SINE|Alu	16408	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr4.69917179.+	chr4	69917179	69917180	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-31066	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr1.156851437.+	chr1	156851437	156851438	+	0	NA	"3' UTR (NM_002529, exon 17 of 17)"	"3' UTR (NM_002529, exon 17 of 17)"	-12086	NM_001080471	375033	Hs.142003	NM_001080471	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
chr14.76577625.+	chr14	76577625	76577626	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40634	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr5.87348566.-	chr5	87348566	87348567	-	0	NA	Intergenic	L1PA2|LINE|L1	-216099	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr19.36762849.-	chr19	36762849	36762850	-	0	NA	Intergenic	SST1|Satellite|centr	39396	NR_029389	100134317	Hs.729610	NR_029389		LOC100134317	-	uncharacterized LOC100134317	miscRNA
chr10.133869106.-	chr10	133869106	133869107	-	0	NA	Intergenic	Intergenic	49207	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr3.36494760.-	chr3	36494760	36494761	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72663	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr3.180597038.-	chr3	180597038	180597039	-	0	NA	Intergenic	AluSx3|SINE|Alu	33196	NM_005087	8087	Hs.478407	NM_001013438		FXR1	FXR1P	"fragile X mental retardation, autosomal homolog 1"	protein-coding
chr1.45963438.+	chr1	45963438	45963439	+	0	NA	"intron (NR_033298, intron 2 of 5)"	SVA_D|Other|Other	2313	NR_033298	126661	Hs.461300	NM_001102601	ENSG00000236624	CCDC163P	C1orf231	"coiled-coil domain containing 163, pseudogene"	pseudo
chr2.74668990.-	chr2	74668990	74668991	-	0	NA	promoter-TSS (NM_001015055)	promoter-TSS (NM_001015055)	-70	NM_001015055	6242	Hs.192854	NM_001015055	ENSG00000114993	RTKN	-	rhotekin	protein-coding
chr12.70156397.-	chr12	70156397	70156398	-	0	NA	"intron (NM_022456, intron 3 of 10)"	AluY|SINE|Alu	16357	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
chrX.153095484.-	chrX	153095484	153095485	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-519	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chrX.132930072.-	chrX	132930072	132930073	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189601	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr5.137550363.-	chr5	137550363	137550364	-	0	NA	Intergenic	AluY|SINE|Alu	1331	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr5.180198335.-	chr5	180198335	180198336	-	0	NA	Intergenic	SVA_D|Other|Other	31277	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr16.86337858.-	chr16	86337858	86337859	-	0	NA	Intergenic	CpG	-17821	NR_038438	146513	Hs.434338	NR_038438	ENSG00000268532	LOC146513	-	uncharacterized LOC146513	miscRNA
chr6.154868719.+	chr6	154868719	154868720	+	0	NA	Intergenic	AluY|SINE|Alu	-36966	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding
chr1.40330228.-	chr1	40330228	40330229	-	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	-18949	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr19.49186332.-	chr19	49186332	49186333	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10068	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chrX.42144947.-	chrX	42144947	42144948	-	0	NA	Intergenic	SVA_D|Other|Other	362660	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr1.47808998.-	chr1	47808998	47808999	-	0	NA	"intron (NM_001136140, intron 1 of 4)"	AluSg4|SINE|Alu	-9529	NR_046395	51727	Hs.731647	NM_001136140	ENSG00000162368	CMPK1	CMK|CMPK|UMK|UMP-CMPK|UMPK	"cytidine monophosphate (UMP-CMP) kinase 1, cytosolic"	protein-coding
chr11.66970132.-	chr11	66970132	66970133	-	0	NA	"intron (NM_012308, intron 5 of 20)"	AluY|SINE|Alu	37374	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr9.141038896.-	chr9	141038896	141038897	-	0	NA	Intergenic	Intergenic	5669	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr10.6985574.-	chr10	6985574	6985575	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164014	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr6.114067422.-	chr6	114067422	114067423	-	0	NA	Intergenic	AluY|SINE|Alu	111105	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr7.99630458.+	chr7	99630458	99630459	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluY|SINE|Alu	-16959	NM_145914	7589	Hs.632294	NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
chr22.50919605.+	chr22	50919605	50919606	+	0	NA	promoter-TSS (NM_001253845)	promoter-TSS (NM_001253845)	-380	NM_024866	79924	Hs.743540	NM_001253845	ENSG00000128165	ADM2	AM2|dJ579N16.4	adrenomedullin 2	protein-coding
chr13.25592833.-	chr13	25592833	25592834	-	0	NA	Intergenic	CpG	50226	NR_026730	646405	Hs.620592	NR_026730		TPTE2P1	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudo
chr14.50066604.-	chr14	50066604	50066605	-	0	NA	"intron (NR_037792, intron 1 of 5)"	G-rich|Low_complexity|Low_complexity	-1189	NR_037792	122769	Hs.451090	NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
chr9.14830723.+	chr9	14830723	14830724	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51192	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chrX.125299933.-	chrX	125299933	125299934	-	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	-147	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr8.1312660.-	chr8	1312660	1312661	-	0	NA	Intergenic	Intergenic	61833	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr11.47284116.-	chr11	47284116	47284117	-	0	NA	"intron (NM_001130102, intron 6 of 8)"	AluSz|SINE|Alu	-4648	NM_005693	10062	Hs.438863	NM_001130101	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	"nuclear receptor subfamily 1, group H, member 3"	protein-coding
chr5.178491477.-	chr5	178491477	178491478	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3870	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr14.64299500.-	chr14	64299500	64299501	-	0	NA	Intergenic	AluJb|SINE|Alu	20183	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr1.246995903.-	chr1	246995903	246995904	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42984	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr1.182583557.-	chr1	182583557	182583558	-	0	NA	promoter-TSS (NR_036490)	promoter-TSS (NR_036490)	718	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LOC284648	-	uncharacterized LOC284648	miscRNA
chr17.79427757.-	chr17	79427757	79427758	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9543	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr7.1592365.-	chr7	1592365	1592366	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	-3701	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chrX.23796170.+	chrX	23796170	23796171	+	0	NA	Intergenic	AluSx|SINE|Alu	-5105	NM_002970	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr22.50681874.+	chr22	50681874	50681875	+	0	NA	"intron (NM_020461, intron 1 of 24)"	AluSg|SINE|Alu	1526	NM_020461	85378	Hs.336431	NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCPHCR	"tubulin, gamma complex associated protein 6"	protein-coding
chr8.88833121.+	chr8	88833121	88833122	+	0	NA	Intergenic	LTR12C|LTR|ERV1	53175	NM_152418	138009	Hs.371738	NM_152418	ENSG00000176566	DCAF4L2	WDR21C	DDB1 and CUL4 associated factor 4-like 2	protein-coding
chr2.126700672.-	chr2	126700672	126700673	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712839	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr19.23391297.-	chr19	23391297	23391298	-	0	NA	Intergenic	AluYb8|SINE|Alu	-41875	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr22.31792832.-	chr22	31792832	31792833	-	0	NA	Intergenic	AluJr4|SINE|Alu	2707	NM_004147	4733	Hs.115242	NM_004147	ENSG00000185721	DRG1	NEDD3	developmentally regulated GTP binding protein 1	protein-coding
chr20.25837901.-	chr20	25837901	25837902	-	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	55974	NR_026714	728882	Hs.682103	NR_026714		FAM182B	-	"family with sequence similarity 182, member B"	miscRNA
chr1.197233950.+	chr1	197233950	197233951	+	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	-3384	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr2.190692832.-	chr2	190692832	190692833	-	0	NA	"intron (NM_001128143, intron 5 of 11)"	AluY|SINE|Alu	43735	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr3.60261996.-	chr3	60261996	60261997	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluY|SINE|Alu	-975137	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr21.32687759.-	chr21	32687759	32687760	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243531	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr7.100044619.+	chr7	100044619	100044620	+	0	NA	Intergenic	AluY|SINE|Alu	-10525	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr5.79331114.-	chr5	79331114	79331115	-	0	NA	promoter-TSS (NM_003248)	promoter-TSS (NM_003248)	56	NM_003248	7060	Hs.211426	NM_003248	ENSG00000113296	THBS4	TSP4	thrombospondin 4	protein-coding
chr1.150745375.+	chr1	150745375	150745376	+	0	NA	Intergenic	AluY|SINE|Alu	-6942	NM_001199739	1520	Hs.181301	NM_001199739	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
chr2.202092561.-	chr2	202092561	202092562	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5605	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr7.532210.-	chr7	532210	532211	-	0	NA	Intergenic	Intergenic	-27271	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr9.101868049.+	chr9	101868049	101868050	+	0	NA	"intron (NM_001130916, intron 1 of 7)"	CpG	637	NM_004612	7046	Hs.494622	NM_001130916	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|LDS1A|LDS2A|MSSE|SKR4|TGFR-1	"transforming growth factor, beta receptor 1"	protein-coding
chr7.5345660.-	chr7	5345660	5345661	-	0	NA	TTS (NM_001080495)	TTS (NM_001080495)	-23099	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr3.36494783.-	chr3	36494783	36494784	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72686	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr2.3331096.+	chr2	3331096	3331097	+	0	NA	"intron (NM_003310, intron 3 of 8)"	AluSz|SINE|Alu	50557	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr2.42782476.+	chr2	42782476	42782477	+	0	NA	Intergenic	AluSp|SINE|Alu	-13195	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr7.155656534.-	chr7	155656534	155656535	-	0	NA	Intergenic	Intergenic	51567	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr1.218165408.-	chr1	218165408	218165409	-	0	NA	Intergenic	AluSq|SINE|Alu	-99166	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr10.69822244.+	chr10	69822244	69822245	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12859	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr18.70912411.-	chr18	70912411	70912412	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19322	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr15.41674328.+	chr15	41674328	41674329	+	0	NA	Intergenic	SVA_F|Other|Other	20330	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr19.40973090.+	chr19	40973090	40973091	+	0	NA	promoter-TSS (NM_020971)	promoter-TSS (NM_020971)	-36	NM_020971	57731	Hs.32706	NM_020971	ENSG00000160460	SPTBN4	QV|SPNB4|SPTBN3	"spectrin, beta, non-erythrocytic 4"	protein-coding
chr2.19560986.+	chr2	19560986	19560987	+	0	NA	Intergenic	CpG	-2614	NM_145260	130497	Hs.123933	NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related 1 (Drosophila)	protein-coding
chr12.109637543.+	chr12	109637543	109637544	+	0	NA	"intron (NM_001093, intron 17 of 51)"	AluY|SINE|Alu	60341	NM_001093	32	Hs.234898	NM_001093	ENSG00000076555	ACACB	ACC2|ACCB|HACC275	acetyl-CoA carboxylase beta	protein-coding
chr19.2898696.+	chr19	2898696	2898697	+	0	NA	Intergenic	AluSc|SINE|Alu	-2200	NM_173480	126295	Hs.591378	NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
chr1.151199136.-	chr1	151199136	151199137	-	0	NA	"intron (NM_001135638, intron 3 of 15)"	AluSq2|SINE|Alu	28061	NM_002810	5710	Hs.505059	NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 4"	protein-coding
chr16.22675498.-	chr16	22675498	22675499	-	0	NA	Intergenic	AluJr|SINE|Alu	54105	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr10.105992125.+	chr10	105992125	105992126	+	0	NA	promoter-TSS (NM_025145)	promoter-TSS (NM_025145)	-5	NM_025145	80217	Hs.288927	NM_025145	ENSG00000197748	WDR96	C10orf79|bA373N18.2	WD repeat domain 96	protein-coding
chr2.114341493.-	chr2	114341493	114341494	-	0	NA	"non-coding (NR_024077, exon 1 of 11)"	"non-coding (NR_024077, exon 1 of 11)"	-263	NR_024077	375260	Hs.709408	NM_198943	ENSG00000146556	WASH2P	FAM39B	WAS protein family homolog 2 pseudogene	pseudo
chr11.89400826.-	chr11	89400826	89400827	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8361	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr13.100934734.+	chr13	100934734	100934735	+	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	193465	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chrM.16399.+	chrM	16399	16400	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.10290833.+	chr3	10290833	10290834	+	0	NA	"intron (NM_014760, intron 1 of 7)"	"intron (NM_014760, intron 1 of 7)"	656	NM_014760	9797	Hs.475401	NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
chr6.12012490.+	chr6	12012490	12012491	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-234	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr9.10974558.-	chr9	10974558	10974559	-	0	NA	Intergenic	L1PBa|LINE|L1	361835	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr18.77627530.-	chr18	77627530	77627531	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3862	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr3.112807980.+	chr3	112807980	112807981	+	0	NA	Intergenic	AluYc|SINE|Alu	-69425	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr7.856320.+	chr7	856320	856321	+	0	NA	promoter-TSS (NM_001171945)	promoter-TSS (NM_001171945)	68	NM_025154	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr8.107670064.+	chr8	107670064	107670065	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	28	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr8.29884849.-	chr8	29884849	29884850	-	0	NA	Intergenic	CpG	-55800	NM_016127	51669	Hs.521487	NM_016127	ENSG00000133872	TMEM66	FOAP-7|SARAF|XTP3	transmembrane protein 66	protein-coding
chr14.106358758.+	chr14	106358758	106358759	+	0	NA	Intergenic	Intergenic	-25080	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr2.91874358.+	chr2	91874358	91874359	+	0	NA	Intergenic	CpG	-26383	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chrX.54209006.+	chrX	54209006	54209007	+	0	NA	"exon (NM_198456, exon 1 of 2)"	"exon (NM_198456, exon 1 of 2)"	708	NM_198456	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr7.2674492.+	chr7	2674492	2674493	+	0	NA	"intron (NM_025250, intron 1 of 13)"	"intron (NM_025250, intron 1 of 13)"	2889	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety homolog 3 (Drosophila)	protein-coding
chr8.144503704.+	chr8	144503704	144503705	+	0	NA	Intergenic	CpG	8898	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr8.141559344.+	chr8	141559344	141559345	+	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	37263	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr16.17617334.+	chr16	17617334	17617335	+	0	NA	Intergenic	AluSz|SINE|Alu	-52596	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr15.75494168.+	chr15	75494168	75494169	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-53	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr7.53587022.-	chr7	53587022	53587023	-	0	NA	Intergenic	AluY|SINE|Alu	-292602	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr13.50701764.-	chr13	50701764	50701765	-	0	NA	Intergenic	CpG-6444	2087	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr21.32916806.-	chr21	32916806	32916807	-	0	NA	"intron (NM_003253, intron 1 of 28)"	AluSx1|SINE|Alu	-14484	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr1.57087963.+	chr1	57087963	57087964	+	0	NA	Intergenic	AluSz|SINE|Alu	-23027	NM_006252	5563	Hs.437039	NM_006252	ENSG00000162409	PRKAA2	AMPK|AMPK2|AMPKa2|PRKAA	"protein kinase, AMP-activated, alpha 2 catalytic subunit"	protein-coding
chr16.81282927.+	chr16	81282927	81282928	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10631	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr11.128041187.-	chr11	128041187	128041188	-	0	NA	Intergenic	AluY|SINE|Alu	-351018	NM_005238	2113	Hs.369438	NM_001143820	ENSG00000134954	ETS1	ETS-1|EWSR2	v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	protein-coding
chrX.70865463.-	chrX	70865463	70865464	-	0	NA	"intron (NR_001568, intron 1 of 3)"	SVA_B|Other|Other	27096	NM_001142797	2833	Hs.198252	NM_001142797	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	chemokine (C-X-C motif) receptor 3	protein-coding
chr15.69745523.-	chr15	69745523	69745524	-	0	NA	"intron (NM_213725, intron 1 of 2)"	CpG	-364	NM_001003	6176	Hs.356502	NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	"ribosomal protein, large, P1"	protein-coding
chr12.57177855.+	chr12	57177855	57177856	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20747	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chrX.23801553.+	chrX	23801553	23801554	+	0	NA	"intron (NR_027783, intron 1 of 6)"	CpG	278	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr1.28703575.-	chr1	28703575	28703576	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7482	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr15.89358752.-	chr15	89358752	89358753	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12078	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr8.141296405.+	chr8	141296405	141296406	+	0	NA	"intron (NM_031466, intron 13 of 22)"	"intron (NM_031466, intron 13 of 22)"	171456	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr5.1038046.-	chr5	1038046	1038047	-	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	-25043	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr5.25535467.+	chr5	25535467	25535468	+	0	NA	Intergenic	AluY|SINE|Alu	-694775	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr4.44679282.-	chr4	44679282	44679283	-	0	NA	Intergenic	AluSg|SINE|Alu	1151	NM_021927	60558	Hs.546419	NM_021927	ENSG00000151806	GUF1	EF-4	GUF1 GTPase homolog (S. cerevisiae)	protein-coding
chr14.106359739.-	chr14	106359739	106359740	-	0	NA	Intergenic	Intergenic	24099	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr12.118663856.+	chr12	118663856	118663857	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89986	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr8.29884834.-	chr8	29884834	29884835	-	0	NA	Intergenic	CpG	-55815	NM_016127	51669	Hs.521487	NM_016127	ENSG00000133872	TMEM66	FOAP-7|SARAF|XTP3	transmembrane protein 66	protein-coding
chr6.123144125.-	chr6	123144125	123144126	-	0	NA	Intergenic	AluY|SINE|Alu	-34154	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr7.155656504.-	chr7	155656504	155656505	-	0	NA	Intergenic	Intergenic	51537	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr7.158670579.+	chr7	158670579	158670580	+	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	21310	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr20.46387674.-	chr20	46387674	46387675	-	0	NA	"intron (NM_198596, intron 1 of 20)"	"intron (NM_198596, intron 1 of 20)"	-27134	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr16.87360654.+	chr16	87360654	87360655	+	0	NA	Intergenic	Intergenic	-9628	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr17.2278920.+	chr17	2278920	2278921	+	0	NA	"exon (NM_014853, exon 18 of 24)"	"exon (NM_014853, exon 18 of 24)"	25338	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr9.92218751.-	chr9	92218751	92218752	-	0	NA	Intergenic	Intergenic	1176	NM_006705	10912	Hs.9701	NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	"growth arrest and DNA-damage-inducible, gamma"	protein-coding
chr3.126195065.-	chr3	126195065	126195066	-	0	NA	promoter-TSS (NM_025112)	promoter-TSS (NM_025112)	303	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr14.80915457.-	chr14	80915457	80915458	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218060	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr11.7603331.-	chr11	7603331	7603332	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15086	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr20.31414383.-	chr20	31414383	31414384	-	0	NA	"intron (NM_012325, intron 2 of 6)"	AluSz|SINE|Alu	-6684	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	"microtubule-associated protein, RP/EB family, member 1"	protein-coding
chr19.11104351.-	chr19	11104351	11104352	-	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	-9523	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr14.64976448.-	chr14	64976448	64976449	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5156	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chr2.242750600.+	chr2	242750600	242750601	+	0	NA	"intron (NM_001167600, intron 1 of 3)"	"intron (NM_001167600, intron 1 of 3)"	440	NM_001167601	129807	Hs.551747	NM_001167599	ENSG00000204099	NEU4	-	sialidase 4	protein-coding
chr17.18575640.-	chr17	18575640	18575641	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-854	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr19.27732248.-	chr19	27732248	27732249	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-552600	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr4.163164023.-	chr4	163164023	163164024	-	0	NA	Intergenic	AluY|SINE|Alu	78837	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr20.3079574.+	chr20	3079574	3079575	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7983	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	miscRNA
chr8.12476353.-	chr8	12476353	12476354	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46767	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr20.61371645.+	chr20	61371645	61371646	+	0	NA	"intron (NM_002531, intron 1 of 3)"	"intron (NM_002531, intron 1 of 3)"	31456	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
chr10.123790907.+	chr10	123790907	123790908	+	0	NA	"intron (NM_206862, intron 2 of 22)"	MLT1K|LTR|ERVL-MaLR	42218	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr15.41687845.+	chr15	41687845	41687846	+	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	6813	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr22.51001350.-	chr22	51001350	51001351	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	22	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr15.37172794.-	chr15	37172794	37172795	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5940	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr3.51745884.+	chr3	51745884	51745885	+	0	NA	"intron (NM_000839, intron 2 of 5)"	"intron (NM_000839, intron 2 of 5)"	4803	NM_000839	2912	Hs.121510	NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	"glutamate receptor, metabotropic 2"	protein-coding
chr7.1798952.+	chr7	1798952	1798953	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50154	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr2.122878790.-	chr2	122878790	122878791	-	0	NA	Intergenic	AluY|SINE|Alu	-365669	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr8.107670094.-	chr8	107670094	107670095	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-58	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr17.3290556.-	chr17	3290556	3290557	-	0	NA	Intergenic	AluSx1|SINE|Alu	-11148	NM_003553	8387	Hs.278485	NM_003553		OR1E1	HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547	"olfactory receptor, family 1, subfamily E, member 1"	protein-coding
chr3.126207230.-	chr3	126207230	126207231	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12468	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr20.45571659.+	chr20	45571659	45571660	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48396	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr8.33580503.-	chr8	33580503	33580504	-	0	NA	Intergenic	CpG	123064	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
chr19.48814058.-	chr19	48814058	48814059	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9274	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr2.101959021.-	chr2	101959021	101959022	-	0	NA	Intergenic	Intergenic	-33109	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	miscRNA
chr10.59351284.-	chr10	59351284	59351285	-	0	NA	Intergenic	AluY|SINE|Alu	286965	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr14.77227717.-	chr14	77227717	77227718	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	518	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr15.63229233.-	chr15	63229233	63229234	-	0	NA	Intergenic	AluSp|SINE|Alu	105605	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr2.240362345.+	chr2	240362345	240362346	+	0	NA	Intergenic	Intergenic	-39702	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr20.33734903.-	chr20	33734903	33734904	-	0	NA	"non-coding (NR_026728, exon 1 of 10)"	"non-coding (NR_026728, exon 1 of 10)"	-258	NR_026728	55741	Hs.720177	NM_001145025	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	"ER degradation enhancer, mannosidase alpha-like 2"	protein-coding
chr16.25210480.-	chr16	25210480	25210481	-	0	NA	Intergenic	AluSq2|SINE|Alu	17805	NM_001169	343	Hs.176658	NM_001169	ENSG00000103375	AQP8	AQP-8	aquaporin 8	protein-coding
chr9.88491227.+	chr9	88491227	88491228	+	0	NA	Intergenic	AluYc|SINE|Alu	-64830	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr8.98771766.-	chr8	98771766	98771767	-	0	NA	Intergenic	AluSq10|SINE|Alu	16043	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr8.26532448.+	chr8	26532448	26532449	+	0	NA	Intergenic	AluSp|SINE|Alu	96527	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr12.112194280.-	chr12	112194280	112194281	-	0	NA	"3' UTR (NM_001136538, exon 22 of 22)"	"3' UTR (NM_001136538, exon 22 of 22)"	10411	NM_001204889	217	Hs.604551	NM_000690	ENSG00000111275	ALDH2	ALDH-E2|ALDHI|ALDM	aldehyde dehydrogenase 2 family (mitochondrial)	protein-coding
chr2.175183585.+	chr2	175183585	175183586	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7170	NR_038897	285084	Hs.275398	NR_038897	ENSG00000231453	LOC285084	-	uncharacterized LOC285084	miscRNA
chr12.19304893.-	chr12	19304893	19304894	-	0	NA	"intron (NM_019012, intron 3 of 25)"	AluY|SINE|Alu	-22267	NM_001190860	54477	Hs.188614	NM_001143821	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	"pleckstrin homology domain containing, family A member 5"	protein-coding
chr9.86597310.+	chr9	86597310	86597311	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1673	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr15.83248400.+	chr15	83248400	83248401	+	0	NA	"intron (NM_030594, intron 2 of 11)"	AluYb8|SINE|Alu	-7827	NM_001079533	64506	Hs.547988	NM_001079533	ENSG00000214575	CPEB1	CEBP|CPE-BP1|CPEB	cytoplasmic polyadenylation element binding protein 1	protein-coding
chr8.86544448.-	chr8	86544448	86544449	-	0	NA	Intergenic	AluSp|SINE|Alu	-23457	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr1.3022463.+	chr1	3022463	3022464	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22076	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr12.117737201.-	chr12	117737201	117737202	-	0	NA	"intron (NM_000620, intron 3 of 28)"	AluY|SINE|Alu	-5656	NM_001204213	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr9.140459803.+	chr9	140459803	140459804	+	0	NA	"intron (NM_138778, intron 5 of 8)"	"intron (NM_138778, intron 5 of 8)"	13494	NM_032477	64975	Hs.44017	NM_032477		MRPL41	BMRP|MRP-L27|MRPL27|RPML27	mitochondrial ribosomal protein L41	protein-coding
chr16.84212698.+	chr16	84212698	84212699	+	0	NA	"exon (NM_005679, exon 14 of 14)"	"exon (NM_005679, exon 14 of 14)"	7978	NM_139353	9013	Hs.153022	NM_001243156	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa"	protein-coding
chr2.174617789.-	chr2	174617789	174617790	-	0	NA	Intergenic	AluSx4|SINE|Alu	-211158	NM_001017371	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr1.113336826.+	chr1	113336826	113336827	+	0	NA	Intergenic	MER70B|LTR|ERVL	73637	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr1.92407892.+	chr1	92407892	92407893	+	0	NA	Intergenic	AluY|SINE|Alu	-7036	NM_207189	676	Hs.482520	NM_001242805	ENSG00000137948	BRDT	BRD6|CT9	"bromodomain, testis-specific"	protein-coding
chr4.177147015.-	chr4	177147015	177147016	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30193	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr7.1286203.-	chr7	1286203	1286204	-	0	NA	Intergenic	CpG	-13549	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr4.71832376.+	chr4	71832376	71832377	+	0	NA	"intron (NM_001244766, intron 3 of 6)"	AluSp|SINE|Alu	-26889	NM_000788	1633	Hs.709	NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
chr3.188566613.-	chr3	188566613	188566614	-	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	323150	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr9.719250.+	chr9	719250	719251	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12444	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr16.30170466.+	chr16	30170466	30170467	+	0	NA	Intergenic	SVA_A|Other|Other	-24265	NM_001193333	11151	Hs.415067	NM_001193333	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|TACO|p57	"coronin, actin binding protein, 1A"	protein-coding
chr11.1946050.+	chr11	1946050	1946051	+	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	5251	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr19.3247899.+	chr19	3247899	3247900	+	0	NA	"intron (NR_033342, intron 1 of 12)"	AluSx1|SINE|Alu	22416	NR_033342	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr8.76091562.-	chr8	76091562	76091563	-	0	NA	Intergenic	L1PA16|LINE|L1	-194854	NM_031461	83690	Hs.436542	NM_031461	ENSG00000121005	CRISPLD1	CRISP10|LCRISP1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding
chr11.111957636.+	chr11	111957636	111957637	+	0	NA	promoter-TSS (NM_001276506)	promoter-TSS (NM_001276506)	88	NM_001276506	6392	Hs.744039	NM_001276503	ENSG00000204370	SDHD	CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS	"succinate dehydrogenase complex, subunit D, integral membrane protein"	protein-coding
chr18.28613890.+	chr18	28613890	28613891	+	0	NA	"intron (NM_024423, intron 1 of 16)"	AluY|SINE|Alu	8891	NM_001941	1825	Hs.41690	NM_001941	ENSG00000134762	DSC3	CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP	desmocollin 3	protein-coding
chr17.1226140.-	chr17	1226140	1226141	-	0	NA	Intergenic	AluSx|SINE|Alu	-43183	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr9.95546684.+	chr9	95546684	95546685	+	0	NA	Intergenic	AluSq2|SINE|Alu	-19601	NM_001003800	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr12.54763503.+	chr12	54763503	54763504	+	0	NA	"3' UTR (NM_015481, exon 7 of 7)"	"3' UTR (NM_015481, exon 7 of 7)"	-5233	NM_020370	53831	Hs.306199	NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
chr2.90481119.+	chr2	90481119	90481120	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1366856	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr6.89378020.-	chr6	89378020	89378021	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295328	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chrY.9930609.-	chrY	9930609	9930610	-	0	NA	Intergenic	Intergenic	-182202	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr1.113336846.+	chr1	113336846	113336847	+	0	NA	Intergenic	MER70B|LTR|ERVL	73657	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr5.1494500.-	chr5	1494500	1494501	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29576	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr20.61371637.+	chr20	61371637	61371638	+	0	NA	"intron (NM_002531, intron 1 of 3)"	"intron (NM_002531, intron 1 of 3)"	31448	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
chrX.132930105.+	chrX	132930105	132930106	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189568	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr17.3630892.+	chr17	3630892	3630893	+	0	NA	TTS (NM_031965)	TTS (NM_031965)	3695	NM_031965	83903	Hs.534059	NM_031965	ENSG00000177602	GSG2	HASPIN	germ cell associated 2 (haspin)	protein-coding
chr1.32122109.+	chr1	32122109	32122110	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11271	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr1.16972994.+	chr1	16972994	16972995	+	0	NA	"non-coding (NR_027504, exon 2 of 14)"	"non-coding (NR_027504, exon 2 of 14)"	925	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr9.26387262.-	chr9	26387262	26387263	-	0	NA	Intergenic	AluY|SINE|Alu	-320589	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr16.924577.-	chr16	924577	924578	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69134	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr17.31619219.+	chr17	31619219	31619220	+	0	NA	"5' UTR (NM_183377, exon 1 of 10)"	"5' UTR (NM_183377, exon 1 of 10)"	787	NM_183377	40	Hs.368417	NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
chr5.72677734.-	chr5	72677734	72677735	-	0	NA	Intergenic	CpG	-66618	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC4	forkhead box D1	protein-coding
chrX.46135364.+	chrX	46135364	46135365	+	0	NA	Intergenic	SVA_F|Other|Other	-171260	NM_001129899	55634	Hs.632800	NM_001129898	ENSG00000147121	KRBOX4	ZNF673	KRAB box domain containing 4	protein-coding
chr17.15703049.+	chr17	15703049	15703050	+	0	NA	Intergenic	AluYk4|SINE|Alu	12885	NR_002211	4213	Hs.356135	NR_002211		MEIS3P1	MEIS3|MEIS4|MRG2	Meis homeobox 3 pseudogene 1	pseudo
chrX.81762771.-	chrX	81762771	81762772	-	0	NA	Intergenic	AluY|SINE|Alu	1000498	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr19.18180396.-	chr19	18180396	18180397	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17301	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr1.163468730.+	chr1	163468730	163468731	+	0	NA	Intergenic	SVA_A|Other|Other	177007	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr8.21208788.+	chr8	21208788	21208789	+	0	NA	Intergenic	Intergenic	377291	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr3.124468924.+	chr3	124468924	124468925	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19711	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr21.43699094.-	chr21	43699094	43699095	-	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	-36612	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr7.77452586.-	chr7	77452586	77452587	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16861	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr12.121734488.-	chr12	121734488	121734489	-	0	NA	promoter-TSS (NM_001270485)	promoter-TSS (NM_001270485)	-68	NM_172226	10645	Hs.297343	NM_001270485	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	"calcium/calmodulin-dependent protein kinase kinase 2, beta"	protein-coding
chr6.147830243.-	chr6	147830243	147830244	-	0	NA	"exon (NM_001030060, exon 1 of 2)"	"exon (NM_001030060, exon 1 of 2)"	-415	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
chr13.66584765.+	chr13	66584765	66584766	+	0	NA	Intergenic	AluY|SINE|Alu	-814536	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr5.86907805.+	chr5	86907805	86907806	+	0	NA	Intergenic	AluY|SINE|Alu	-198955	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr2.181845289.-	chr2	181845289	181845290	-	0	NA	promoter-TSS (NM_006357)	promoter-TSS (NM_006357)	53	NM_006357	10477	Hs.470804	NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chr9.134165358.-	chr9	134165358	134165359	-	0	NA	"5' UTR (NM_032728, exon 1 of 2)"	"5' UTR (NM_032728, exon 1 of 2)"	-277	NM_032728	84814	Hs.134292	NM_032728	ENSG00000160539	PPAPDC3	C9orf67|NET39	phosphatidic acid phosphatase type 2 domain containing 3	protein-coding
chr5.1887183.-	chr5	1887183	1887184	-	0	NA	Intergenic	CpG-20520	4303	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr6.144923531.+	chr6	144923531	144923532	+	0	NA	"intron (NM_007124, intron 50 of 73)"	AluSx3|SINE|Alu	310658	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr2.208475930.+	chr2	208475930	208475931	+	0	NA	"3' UTR (NM_145280, exon 4 of 4)"	"3' UTR (NM_145280, exon 4 of 4)"	13766	NM_145280	151194	Hs.664764	NM_001127395	ENSG00000144401	METTL21A	FAM119A|HCA557b	methyltransferase like 21A	protein-coding
chr7.66064178.+	chr7	66064178	66064179	+	0	NA	Intergenic	AluY|SINE|Alu	-20680	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr19.34620300.+	chr19	34620300	34620301	+	0	NA	Intergenic	AluY|SINE|Alu	-43052	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr13.59108606.-	chr13	59108606	59108607	-	0	NA	Intergenic	AluY|SINE|Alu	-902817	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr12.57183261.+	chr12	57183261	57183262	+	0	NA	Intergenic	SVA_D|Other|Other	26153	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr7.100201789.-	chr7	100201789	100201790	-	0	NA	promoter-TSS (NR_038910)	promoter-TSS (NR_038910)	128	NR_038910	100129845	Hs.714123	NR_038910	ENSG00000224729	PCOLCE-AS1	-	PCOLCE antisense RNA 1	miscRNA
chr5.148988214.+	chr5	148988214	148988215	+	0	NA	"intron (NM_001001669, intron 3 of 12)"	AluSg|SINE|Alu	27079	NM_001001669	389337	Hs.256206	NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding
chr9.14830611.+	chr9	14830611	14830612	+	0	NA	"intron (NM_144966, intron 11 of 37)"	"intron (NM_144966, intron 11 of 37)"	-51080	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr8.60674703.-	chr8	60674703	60674704	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519251	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr3.50273463.-	chr3	50273463	50273464	-	0	NA	promoter-TSS (NM_002070)	promoter-TSS (NM_002070)	184	NM_002070	2771	Hs.77269	NM_001166425	ENSG00000114353	GNAI2	GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1	"guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2"	protein-coding
chr5.160463939.-	chr5	160463939	160463940	-	0	NA	Intergenic	AluY|SINE|Alu	98306	NR_027111	285629	Hs.554279	NR_027111	ENSG00000253417	LOC285629	-	uncharacterized LOC285629	miscRNA
chr2.241780292.+	chr2	241780292	241780293	+	0	NA	Intergenic	Intergenic	-20567	NM_001244008	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr5.151304620.-	chr5	151304620	151304621	-	0	NA	promoter-TSS (NM_001146040)	promoter-TSS (NM_001146040)	223	NM_001146040	2741	Hs.121490	NM_000171	ENSG00000145888	GLRA1	HKPX1|STHE	"glycine receptor, alpha 1"	protein-coding
chr4.55525168.+	chr4	55525168	55525169	+	0	NA	"intron (NM_001093772, intron 1 of 20)"	CpG	1073	NM_001093772	3815	Hs.479754	NM_000222	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
chr3.15431306.+	chr3	15431306	15431307	+	0	NA	Intergenic	AluSp|SINE|Alu	37736	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr1.181058694.-	chr1	181058694	181058695	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1056	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr12.42794074.-	chr12	42794074	42794075	-	0	NA	TTS (NM_201438)	TTS (NM_201438)	-74127	NM_201439	51535	Hs.444157	NM_001143787	ENSG00000134283	PPHLN1	HSPC232	periphilin 1	protein-coding
chr7.394782.+	chr7	394782	394783	+	0	NA	Intergenic	Intergenic	-24609	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr19.8070172.-	chr19	8070172	8070173	-	0	NA	"intron (NM_001419, intron 1 of 5)"	"intron (NM_001419, intron 1 of 5)"	-357	NM_001419	1994	Hs.713744	NM_001419	ENSG00000066044	ELAVL1	ELAV1|HUR|Hua|MelG	"ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)"	protein-coding
chr7.53196242.-	chr7	53196242	53196243	-	0	NA	Intergenic	AluY|SINE|Alu	-92893	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr12.32200130.+	chr12	32200130	32200131	+	0	NA	Intergenic	AluSz|SINE|Alu	-53328	NR_046944	100873778		NR_046944		RNU6-78	-	"RNA, U6 small nuclear 78"	snRNA
chr15.75701801.+	chr15	75701801	75701802	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	"intron (NM_001145357, intron 8 of 20)"	-40833	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr5.178658024.-	chr5	178658024	178658025	-	0	NA	"intron (NM_021599, intron 3 of 10)"	"intron (NM_021599, intron 3 of 10)"	-114407	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr17.27717850.+	chr17	27717850	27717851	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-93	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr4.40571753.+	chr4	40571753	40571754	+	0	NA	"intron (NM_001098634, intron 1 of 6)"	AluSz|SINE|Alu	-53763	NM_019027	54502	Hs.518727	NM_001098634	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
chr2.178267559.-	chr2	178267559	178267560	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10088	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr1.167424987.-	chr1	167424987	167424988	-	0	NA	"intron (NM_000734, intron 1 of 7)"	CpG	-62860	NM_198053	919	Hs.156445	NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|T3Z|TCRZ	CD247 molecule	protein-coding
chr8.86574466.+	chr8	86574466	86574467	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	276	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr2.202767488.-	chr2	202767488	202767489	-	0	NA	Intergenic	AluY|SINE|Alu	-96186	NM_001261436	65061	Hs.348711	NM_001261435	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin-dependent kinase 15	protein-coding
chr10.20638038.-	chr10	20638038	20638039	-	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	202861	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr12.46411948.+	chr12	46411948	46411949	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-27547	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr6.151771585.-	chr6	151771585	151771586	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1731	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr11.916037.-	chr11	916037	916038	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	979	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr8.12476349.-	chr8	12476349	12476350	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46771	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr2.85620848.+	chr2	85620848	85620849	+	0	NA	Intergenic	AluSz|SINE|Alu	16972	NM_001256140	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr1.9832294.+	chr1	9832294	9832295	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52256	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr1.43189474.-	chr1	43189474	43189475	-	0	NA	Intergenic	Intergenic	-16451	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr19.34394408.+	chr19	34394408	34394409	+	0	NA	Intergenic	AluSx1|SINE|Alu	106657	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr16.3109380.+	chr16	3109380	3109381	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5933	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr17.72741291.+	chr17	72741291	72741292	+	0	NA	"intron (NM_175738, intron 8 of 8)"	"intron (NM_175738, intron 8 of 8)"	-3460	NM_004252	9368	Hs.744126	NM_004252	ENSG00000109062	SLC9A3R1	EBP50|NHERF|NHERF-1|NHERF1|NPHLOP2	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1"	protein-coding
chr4.87856054.-	chr4	87856054	87856055	-	0	NA	promoter-TSS (NM_001166693)	promoter-TSS (NM_001166693)	52	NR_038841	100506746	Hs.657766	NR_038841	ENSG00000163633	LOC100506746	-	uncharacterized LOC100506746	miscRNA
chr3.77641956.+	chr3	77641956	77641957	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494793	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr10.131449511.-	chr10	131449511	131449512	-	0	NA	"intron (NM_002412, intron 2 of 4)"	"intron (NM_002412, intron 2 of 4)"	-184057	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
chr6.135685306.-	chr6	135685306	135685307	-	0	NA	"intron (NM_001134831, intron 23 of 28)"	SVA_D|Other|Other	-133597	NM_017651	54806	Hs.386684	NM_001134830	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
chr8.42217729.+	chr8	42217729	42217730	+	0	NA	"intron (NM_002690, intron 9 of 13)"	AluSz|SINE|Alu	16945	NM_014420	27121	Hs.159311	NM_014420	ENSG00000104371	DKK4	DKK-4	dickkopf homolog 4 (Xenopus laevis)	protein-coding
chr11.19262565.+	chr11	19262565	19262566	+	0	NA	promoter-TSS (NM_024680)	promoter-TSS (NM_024680)	-58	NM_024680	79733	Hs.523526	NM_001256371	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
chr18.43723421.+	chr18	43723421	43723422	+	0	NA	Intergenic	AluY|SINE|Alu	-30567	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr19.15466579.-	chr19	15466579	15466580	-	0	NA	"intron (NM_005858, intron 13 of 13)"	AluSp|SINE|Alu	-24033	NM_005858	10270	Hs.743430	NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A kinase (PRKA) anchor protein 8	protein-coding
chr7.151348444.+	chr7	151348444	151348445	+	0	NA	"intron (NM_001040633, intron 4 of 15)"	AluSz|SINE|Alu	-19100	NM_024429	51422	Hs.647072	NM_001040633	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	"protein kinase, AMP-activated, gamma 2 non-catalytic subunit"	protein-coding
chr16.89034174.+	chr16	89034174	89034175	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9330	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.72377013.-	chr2	72377013	72377014	-	0	NA	Intergenic	CpG	2050	NM_019885	56603	Hs.91546	NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	"cytochrome P450, family 26, subfamily B, polypeptide 1"	protein-coding
chr17.7246103.+	chr17	7246103	7246104	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6255	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr10.45240316.-	chr10	45240316	45240317	-	0	NA	Intergenic	AluSx1|SINE|Alu	166448	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr2.11541690.-	chr2	11541690	11541691	-	0	NA	"intron (NR_047499, intron 2 of 2)"	AluY|SINE|Alu	-7583	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	miscRNA
chr9.137024611.+	chr9	137024611	137024612	+	0	NA	"3' UTR (NM_052821, exon 13 of 13)"	"3' UTR (NM_052821, exon 13 of 13)"	5075	NR_023344	100151684	Hs.545589	NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	"RNA, U6atac small nuclear (U12-dependent splicing)"	snRNA
chr19.46526243.-	chr19	46526243	46526244	-	0	NA	"exon (NM_005091, exon 1 of 3)"	"exon (NM_005091, exon 1 of 3)"	-313	NM_005091	8993	Hs.137583	NM_005091		PGLYRP1	PGLYRP|PGRP|PGRP-S|PGRPS|TAG7|TNFSF3L	peptidoglycan recognition protein 1	protein-coding
chr10.43563284.+	chr10	43563284	43563285	+	0	NA	Intergenic	Intergenic	-9233	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr19.15719745.+	chr19	15719745	15719746	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6284	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr22.44600847.+	chr22	44600847	44600848	+	0	NA	"intron (NM_022141, intron 12 of 13)"	"intron (NM_022141, intron 12 of 13)"	23590	NM_001137606	64098	Hs.666944	NM_001137606	ENSG00000138964	PARVG	-	"parvin, gamma"	protein-coding
chr2.1896150.+	chr2	1896150	1896151	+	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	-147859	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr22.41521454.-	chr22	41521454	41521455	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32840	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr17.35266161.-	chr17	35266161	35266162	-	0	NA	Intergenic	AluSx3|SINE|Alu	28611	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr8.38894853.+	chr8	38894853	38894854	+	0	NA	"intron (NR_027638, intron 11 of 20)"	AluYc3|SINE|Alu	40348	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
chr3.77641990.+	chr3	77641990	77641991	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494827	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr17.34053892.+	chr17	34053892	34053893	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4787	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr14.23701967.+	chr14	23701967	23701968	+	0	NA	Intergenic	SVA_C|Other|Other	-49098	NM_012244	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	"solute carrier family 7 (amino acid transporter light chain, L system), member 8"	protein-coding
chr4.8629338.+	chr4	8629338	8629339	+	0	NA	Intergenic	AluSx1|SINE|Alu	34951	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr19.34559861.+	chr19	34559861	34559862	+	0	NA	Intergenic	AluYf4|SINE|Alu	-103491	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr10.81319157.+	chr10	81319157	81319158	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	1006	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr14.77965496.-	chr14	77965496	77965497	-	0	NA	promoter-TSS (NM_199296)	promoter-TSS (NM_199296)	286	NM_182509	145501	Hs.29742	NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2 homolog (zebrafish)	protein-coding
chr14.94606685.+	chr14	94606685	94606686	+	0	NA	Intergenic	Intergenic	-10728	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chr7.104040199.-	chr7	104040199	104040200	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71095	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr9.33194251.+	chr9	33194251	33194252	+	0	NA	Intergenic	AluY|SINE|Alu	-26895	NM_001497	2683	Hs.272011	NM_001497	ENSG00000086062	B4GALT1	B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1	"UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1"	protein-coding
chr20.39978512.-	chr20	39978512	39978513	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8952	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr13.81676518.-	chr13	81676518	81676519	-	0	NA	Intergenic	SVA_D|Other|Other	761432	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr16.12163783.+	chr16	12163783	12163784	+	0	NA	"intron (NM_032167, intron 10 of 20)"	AluYc|SINE|Alu	93181	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr4.114652878.-	chr4	114652878	114652879	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30205	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr2.88284200.-	chr2	88284200	88284201	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	AluY|SINE|Alu	-1109	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
chr19.9311188.+	chr19	9311188	9311189	+	0	NA	Intergenic	L1MA3|LINE|L1	14359	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr8.125514424.-	chr8	125514424	125514425	-	0	NA	"intron (NM_032026, intron 9 of 11)"	AluY|SINE|Alu	-27416	NM_007218	11236	Hs.744151	NM_007218		RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
chr14.44126232.+	chr14	44126232	44126233	+	0	NA	Intergenic	AluSc|SINE|Alu	850267	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr8.22941434.-	chr8	22941434	22941435	-	0	NA	promoter-TSS (NR_046173)	promoter-TSS (NR_046173)	434	NR_046173	254896	Hs.735240	NR_046173		LOC254896	-	uncharacterized LOC254896	miscRNA
chr5.133968955.-	chr5	133968955	133968956	-	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	422	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr22.39895867.-	chr22	39895867	39895868	-	0	NA	Intergenic	AluSc|SINE|Alu	2417	NM_019008	54471	Hs.744044	NM_019008	ENSG00000100335	SMCR7L	HSU79252|MID51|MIEF1|dJ1104E15.3	"Smith-Magenis syndrome chromosome region, candidate 7-like"	protein-coding
chr18.2377824.-	chr18	2377824	2377825	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193665	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr5.57859841.+	chr5	57859841	57859842	+	0	NA	Intergenic	SVA_A|Other|Other	-19098	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chrM.6530.+	chrM	6530	6531	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.21893035.-	chr1	21893035	21893036	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57177	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr12.1059497.-	chr12	1059497	1059498	-	0	NA	promoter-TSS (NM_134424)	promoter-TSS (NM_134424)	634	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr16.81731148.-	chr16	81731148	81731149	-	0	NA	"intron (NM_198390, intron 14 of 20)"	MIR3|SINE|MIR	-32189	NR_045112	100129617	Hs.657151	NR_045112		LOC100129617	-	uncharacterized LOC100129617	miscRNA
chr2.203038188.-	chr2	203038188	203038189	-	0	NA	"intron (NM_001277372, intron 15 of 21)"	AluSp|SINE|Alu	-65134	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr11.68303165.-	chr11	68303165	68303166	-	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	-74979	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr15.85267844.+	chr15	85267844	85267845	+	0	NA	Intergenic	AluY|SINE|Alu	-8153	NM_001271919	23478	Hs.9534	NM_001271918	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A (S. cerevisiae)	protein-coding
chr21.36261320.+	chr21	36261320	36261321	+	0	NA	promoter-TSS (NM_001122607)	promoter-TSS (NM_001122607)	-333	NM_001001890	861	Hs.612648	NM_001001890	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
chr6.25384358.+	chr6	25384358	25384359	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104702	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr9.10786972.+	chr9	10786972	10786973	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174249	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.109308535.+	chr2	109308535	109308536	+	0	NA	Intergenic	AluY|SINE|Alu	-27402	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr17.4488385.-	chr17	4488385	4488386	-	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	-551	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr1.54775780.+	chr1	54775780	54775781	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96199	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr12.127944448.+	chr12	127944448	127944449	+	0	NA	Intergenic	Intergenic	-421714	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr13.33001572.-	chr13	33001572	33001573	-	0	NA	"intron (NM_052818, intron 1 of 4)"	CpG	-743	NM_052818	90634	Hs.732118	NM_001079691	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
chr9.137855572.+	chr9	137855572	137855573	+	0	NA	Intergenic	Intergenic	-45766	NM_002003	2219	Hs.440898	NM_002003	ENSG00000085265	FCN1	FCNM	ficolin (collagen/fibrinogen domain containing) 1	protein-coding
chr12.54085372.+	chr12	54085372	54085373	+	0	NA	Intergenic	AluY|SINE|Alu	-14860	NM_001002031	517	Hs.524464	NM_001002031	ENSG00000135390	ATP5G2	ATP5A	"ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)"	protein-coding
chr16.11747034.-	chr16	11747034	11747035	-	0	NA	Intergenic	AluSx1|SINE|Alu	15255	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chrX.69569675.-	chrX	69569675	69569676	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59796	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr16.9185103.+	chr16	9185103	9185104	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-434	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr6.163113542.-	chr6	163113542	163113543	-	0	NA	"intron (NM_004562, intron 1 of 11)"	MER77|LTR|ERVL	34622	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr20.45557347.+	chr20	45557347	45557348	+	0	NA	"intron (NM_005244, intron 1 of 15)"	"intron (NM_005244, intron 1 of 15)"	34084	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr4.39561494.-	chr4	39561494	39561495	-	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	-32035	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr1.28207925.+	chr1	28207925	28207926	+	0	NA	"intron (NM_004848, intron 3 of 4)"	AluY|SINE|Alu	8870	NM_001039477	9473	Hs.10649	NM_001039477	ENSG00000130775	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
chr12.38493566.-	chr12	38493566	38493567	-	0	NA	Intergenic	Intergenic	216991	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr6.150275505.+	chr6	150275505	150275506	+	0	NA	Intergenic	CpG	-9638	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr11.62418872.-	chr11	62418872	62418873	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-1902	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr1.171662934.+	chr1	171662934	171662935	+	0	NA	Intergenic	SVA_C|Other|Other	-41161	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr11.105759232.+	chr11	105759232	105759233	+	0	NA	"intron (NM_000829, intron 6 of 16)"	AluYa5|SINE|Alu	133722	NM_032424	84437	Hs.266782	NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
chr22.38336400.+	chr22	38336400	38336401	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13254	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr19.48836579.-	chr19	48836579	48836580	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7950	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr18.13726039.+	chr18	13726039	13726040	+	0	NA	promoter-TSS (NM_003799)	promoter-TSS (NM_003799)	552	NM_152352	125228	Hs.13034	NM_001098801	ENSG00000177150	FAM210A	C18orf19|HsT2329	"family with sequence similarity 210, member A"	protein-coding
chr7.156795123.-	chr7	156795123	156795124	-	0	NA	Intergenic	Intergenic	-7006	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr8.141030083.+	chr8	141030083	141030084	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314784	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr16.544890.-	chr16	544890	544891	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20040	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr21.37627719.-	chr21	37627719	37627720	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64768	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr2.14112632.+	chr2	14112632	14112633	+	0	NA	Intergenic	AluY|SINE|Alu	-660178	NM_145175	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	"family with sequence similarity 84, member A"	protein-coding
chr8.107670093.-	chr8	107670093	107670094	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-57	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr19.38755103.+	chr19	38755103	38755104	+	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	5	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr11.31555107.-	chr11	31555107	31555108	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluYk4|SINE|Alu	-23810	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr9.105850362.+	chr9	105850362	105850363	+	0	NA	Intergenic	AluYc|SINE|Alu	92769	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr5.86907810.-	chr5	86907810	86907811	-	0	NA	Intergenic	AluY|SINE|Alu	198960	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr3.142319958.+	chr3	142319958	142319959	+	0	NA	"intron (NM_001145319, intron 1 of 15)"	AluY|SINE|Alu	4729	NM_001145319	5357	Hs.203637	NM_001145319	ENSG00000120756	PLS1	-	plastin 1	protein-coding
chr13.45944949.-	chr13	45944949	45944950	-	0	NA	"intron (NR_024458, intron 4 of 10)"	"intron (NR_024458, intron 4 of 10)"	-29469	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr16.3146816.+	chr16	3146816	3146817	+	0	NA	Intergenic	AluSx|SINE|Alu	-3955	NM_032805	84891	Hs.334515	NM_032805	ENSG00000130182	ZSCAN10	ZNF206	zinc finger and SCAN domain containing 10	protein-coding
chr10.81319173.+	chr10	81319173	81319174	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	990	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr1.212371328.-	chr1	212371328	212371329	-	0	NA	Intergenic	AluY|SINE|Alu	87551	NM_006243	5525	Hs.744012	NM_001199756	ENSG00000066027	PPP2R5A	B56A|PR61A	"protein phosphatase 2, regulatory subunit B', alpha"	protein-coding
chr6.170055414.+	chr6	170055414	170055415	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46745	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr5.170738297.+	chr5	170738297	170738298	+	0	NA	"intron (NM_021025, intron 2 of 2)"	CpG-21367	2009	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr21.35774239.+	chr21	35774239	35774240	+	0	NA	Intergenic	AluSc8|SINE|Alu	26490	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr2.80188685.-	chr2	80188685	80188686	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	312200	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr2.4156516.+	chr2	4156516	4156517	+	0	NA	Intergenic	Intergenic	-134894	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr6.20239313.-	chr6	20239313	20239314	-	0	NA	Intergenic	LTR12C|LTR|ERV1	26618	NM_001080480	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
chr13.103088652.-	chr13	103088652	103088653	-	0	NA	Intergenic	AluY|SINE|Alu	34528	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr6.170055413.-	chr6	170055413	170055414	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46746	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr17.7246085.+	chr17	7246085	7246086	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6237	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr4.8913738.-	chr4	8913738	8913739	-	0	NA	Intergenic	Intergenic	37739	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr10.133203412.-	chr10	133203412	133203413	-	0	NA	Intergenic	Intergenic	93428	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr6.160985733.+	chr6	160985733	160985734	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53577	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr8.123899481.-	chr8	123899481	123899482	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105580	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr9.100747316.-	chr9	100747316	100747317	-	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	-1827	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr6.108280011.+	chr6	108280011	108280012	+	0	NA	promoter-TSS (NM_007214)	promoter-TSS (NM_007214)	-529	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chrM.15611.-	chrM	15611	15612	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr21.45243656.+	chr21	45243656	45243657	+	0	NA	Intergenic	Intergenic	-11208	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr1.60870849.-	chr1	60870849	60870850	-	0	NA	Intergenic	AluYa5|SINE|Alu	331407	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chr8.142215447.+	chr8	142215447	142215448	+	0	NA	Intergenic	AluSx1|SINE|Alu	23226	NM_001080431	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	"solute carrier family 45, member 4"	protein-coding
chr2.92172361.+	chr2	92172361	92172362	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43202	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr1.43189344.-	chr1	43189344	43189345	-	0	NA	Intergenic	AluJr|SINE|Alu	-16581	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr22.37641450.-	chr22	37641450	37641451	-	0	NA	Intergenic	Intergenic	1145	NM_002872	5880	Hs.517601	NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022	"ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)"	protein-coding
chr1.247536542.-	chr1	247536542	247536543	-	0	NA	Intergenic	AluSx3|SINE|Alu	41497	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr1.224601860.-	chr1	224601860	224601861	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15847	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr15.41865545.+	chr15	41865545	41865546	+	0	NA	"exon (NM_006293, exon 17 of 19)"	"exon (NM_006293, exon 17 of 19)"	14325	NM_006293	7301	Hs.381282	NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|RSE|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
chr11.7975915.+	chr11	7975915	7975916	+	0	NA	Intergenic	AluY|SINE|Alu	9144	NM_176821	338322	Hs.449636	NM_176821	ENSG00000182261	NLRP10	CLR11.1|NALP10|NOD8|PAN5|PYNOD	"NLR family, pyrin domain containing 10"	protein-coding
chr8.67618045.+	chr8	67618045	67618046	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6608	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr14.39544126.+	chr14	39544126	39544127	+	0	NA	"intron (NM_006364, intron 8 of 19)"	AluY|SINE|Alu	28311	NM_006364	10484	Hs.272927	NM_006364	ENSG00000100934	SEC23A	CLSD	Sec23 homolog A (S. cerevisiae)	protein-coding
chr16.33293937.-	chr16	33293937	33293938	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4765	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr10.134773729.+	chr10	134773729	134773730	+	0	NA	Intergenic	Intergenic	-5309	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LOC399829	-	uncharacterized LOC399829	miscRNA
chr7.5703145.-	chr7	5703145	5703146	-	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	-16947	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr6.127755459.-	chr6	127755459	127755460	-	0	NA	Intergenic	AluSx1|SINE|Alu	-25076	NM_014702	9729	Hs.319247	NM_014702		KIAA0408	RP3-403A15.2	KIAA0408	protein-coding
chr17.48422548.-	chr17	48422548	48422549	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	845	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr6.74427491.+	chr6	74427491	74427492	+	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	21977	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr13.100914565.+	chr13	100914565	100914566	+	0	NA	"intron (NM_000282, intron 9 of 23)"	AluSx|SINE|Alu	173296	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr2.187453300.-	chr2	187453300	187453301	-	0	NA	Intergenic	AluJr4|SINE|Alu	1490	NM_002210	3685	Hs.436873	NM_001144999	ENSG00000138448	ITGAV	CD51|MSK8|VNRA|VTNR	"integrin, alpha V"	protein-coding
chr9.130734376.+	chr9	130734376	130734377	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8436	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr21.44478125.+	chr21	44478125	44478126	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17915	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr11.45810300.+	chr11	45810300	45810301	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15323	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr5.127419676.+	chr5	127419676	127419677	+	0	NA	promoter-TSS (NR_015360)	promoter-TSS (NR_015360)	193	NM_001256461	6558	Hs.712970	NM_001046	ENSG00000064651	SLC12A2	BSC|BSC2|NKCC1	"solute carrier family 12 (sodium/potassium/chloride transporters), member 2"	protein-coding
chr17.4560140.+	chr17	4560140	4560141	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-15180	NM_001140	246	Hs.73809	NM_001140	ENSG00000161905	ALOX15	15-LOX-1|15LOX-1	arachidonate 15-lipoxygenase	protein-coding
chr11.113666030.-	chr11	113666030	113666031	-	0	NA	Intergenic	AluSx|SINE|Alu	-15512	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr11.8040449.-	chr11	8040449	8040450	-	0	NA	Intergenic	CpG	19731	NM_003320	7275	Hs.733193	NM_003320	ENSG00000166402	TUB	rd5	tubby homolog (mouse)	protein-coding
chr8.67618014.-	chr8	67618014	67618015	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6639	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr16.78269420.-	chr16	78269420	78269421	-	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	-136093	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr16.341094.+	chr16	341094	341095	+	0	NA	"intron (NM_181050, intron 8 of 9)"	CpG	7976	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr19.13528793.+	chr19	13528793	13528794	+	0	NA	"intron (NM_023035, intron 3 of 46)"	"intron (NM_023035, intron 3 of 46)"	88481	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr1.21893061.-	chr1	21893061	21893062	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57203	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chrX.152890827.+	chrX	152890827	152890828	+	0	NA	Intergenic	Intergenic	-17070	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr6.123144119.+	chr6	123144119	123144120	+	0	NA	Intergenic	AluY|SINE|Alu	34148	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chrX.129149238.+	chrX	129149238	129149239	+	0	NA	"exon (NM_021946, exon 3 of 12)"	"exon (NM_021946, exon 3 of 12)"	10074	NM_021946	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
chr17.38406795.-	chr17	38406795	38406796	-	0	NA	"intron (NM_133264, intron 1 of 7)"	AluY|SINE|Alu	-31221	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr16.58810861.-	chr16	58810861	58810862	-	0	NA	Intergenic	AluSq4|SINE|Alu	42615	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr15.89358721.-	chr15	89358721	89358722	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12047	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr1.7952811.-	chr1	7952811	7952812	-	0	NA	Intergenic	AluSx1|SINE|Alu	39260	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr8.60674622.-	chr8	60674622	60674623	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519332	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr16.22943687.+	chr16	22943687	22943688	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	117827	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr8.91013871.-	chr8	91013871	91013872	-	0	NA	"intron (NM_001359, intron 1 of 9)"	CpG	-291	NM_001359	1666	Hs.492212	NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	"2,4-dienoyl CoA reductase 1, mitochondrial"	protein-coding
chr14.23517162.+	chr14	23517162	23517163	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5786	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr17.42774548.-	chr17	42774548	42774549	-	0	NA	Intergenic	AluY|SINE|Alu	7383	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chr11.86934399.-	chr11	86934399	86934400	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-185513	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr16.8974150.-	chr16	8974150	8974151	-	0	NA	Intergenic	Intergenic	11287	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr9.8858149.-	chr9	8858149	8858150	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124203	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.146024454.+	chr8	146024454	146024455	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	193	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr1.24513577.-	chr1	24513577	24513578	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-188	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr22.49832965.+	chr22	49832965	49832966	+	0	NA	Intergenic	AluSx|SINE|Alu	218225	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr8.43274639.-	chr8	43274639	43274640	-	0	NA	Intergenic	SVA_D|Other|Other	-127054	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr17.7308475.+	chr17	7308475	7308476	+	0	NA	Intergenic	CpG-10087	-1025	NM_152766	254863	Hs.730789	NM_152766	ENSG00000205544	TMEM256	C17orf61	transmembrane protein 256	protein-coding
chr1.65532960.-	chr1	65532960	65532961	-	0	NA	Intergenic	CpG	8769	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr11.67759442.-	chr11	67759442	67759443	-	0	NA	"intron (NM_030930, intron 10 of 10)"	CpG	-12151	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chr11.67211052.-	chr11	67211052	67211053	-	0	NA	promoter-TSS (NM_020441)	promoter-TSS (NM_020441)	69	NM_020441	57175	Hs.6191	NM_001018070	ENSG00000172725	CORO1B	CORONIN-2	"coronin, actin binding protein, 1B"	protein-coding
chr2.27588376.+	chr2	27588376	27588377	+	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	4543	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr9.128918408.+	chr9	128918408	128918409	+	0	NA	Intergenic	Intergenic	-170715	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr3.128131630.+	chr3	128131630	128131631	+	0	NA	Intergenic	Intergenic	-50807	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr1.32731919.-	chr1	32731919	32731920	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7793	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr3.102973971.+	chr3	102973971	102973972	+	0	NA	Intergenic	SVA_D|Other|Other	820112	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr22.44778401.-	chr22	44778401	44778402	-	0	NA	Intergenic	Intergenic	69670	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
chr12.30327133.+	chr12	30327133	30327134	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389441	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr5.501538.-	chr5	501538	501539	-	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	-23011	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr22.46326771.+	chr22	46326771	46326772	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46237	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr11.100596533.-	chr11	100596533	100596534	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38126	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr2.178267543.-	chr2	178267543	178267544	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10072	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr2.62740972.+	chr2	62740972	62740973	+	0	NA	Intergenic	AluY|SINE|Alu	-7368	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr20.61610459.+	chr20	61610459	61610460	+	0	NA	Intergenic	Intergenic	26460	NM_022082	63910	Hs.512686	NM_022082	ENSG00000101194	SLC17A9	C20orf59	"solute carrier family 17, member 9"	protein-coding
chrX.133565036.-	chrX	133565036	133565037	-	0	NA	Intergenic	AluSp|SINE|Alu	29139	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr2.2669439.+	chr2	2669439	2669440	+	0	NA	Intergenic	Intergenic	-334394	NM_015025	23040	Hs.669852	NM_015025	ENSG00000186487	MYT1L	NZF1|ZC2HC4B	myelin transcription factor 1-like	protein-coding
chr20.57575077.-	chr20	57575077	57575078	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7232	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chrX.90204196.-	chrX	90204196	90204197	-	0	NA	Intergenic	AluY|SINE|Alu	485401	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr9.34329572.-	chr9	34329572	34329573	-	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-68	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr15.20462445.-	chr15	20462445	20462446	-	0	NA	Intergenic	Intergenic	25552	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr2.130987081.+	chr2	130987081	130987082	+	0	NA	Intergenic	CpG	-31047	NM_207312	112714	Hs.433336	NM_207312	ENSG00000152086	TUBA3E	-	"tubulin, alpha 3e"	protein-coding
chr16.443658.-	chr16	443658	443659	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3534	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr1.227982935.-	chr1	227982935	227982936	-	0	NA	Intergenic	Intergenic	20483	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr17.76798326.-	chr17	76798326	76798327	-	0	NA	"intron (NM_025090, intron 17 of 19)"	CpG	19950	NM_004762	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
chr3.31533133.+	chr3	31533133	31533134	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41358	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr20.1317825.+	chr20	1317825	1317826	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-7946	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr20.47747446.-	chr20	47747446	47747447	-	0	NA	"intron (NM_001037328, intron 6 of 13)"	AluSx|SINE|Alu	-57458	NM_017453	6780	Hs.596704	NM_001037328	ENSG00000124214	STAU1	STAU	"staufen, RNA binding protein, homolog 1 (Drosophila)"	protein-coding
chr16.60255822.-	chr16	60255822	60255823	-	0	NA	Intergenic	AluSc8|SINE|Alu	466727	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr4.484118.-	chr4	484118	484119	-	0	NA	"intron (NM_133474, intron 1 of 2)"	AluY|SINE|Alu	-8842	NM_133474	170960	Hs.724168	NM_133474		ZNF721	-	zinc finger protein 721	protein-coding
chr9.14830627.-	chr9	14830627	14830628	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51096	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr14.20670511.+	chr14	20670511	20670512	+	0	NA	Intergenic	AluSq2|SINE|Alu	5016	NM_001005503	390439	Hs.554582	NM_001005503	ENSG00000196832	OR11G2	OR14-34	"olfactory receptor, family 11, subfamily G, member 2"	protein-coding
chr17.80376245.+	chr17	80376245	80376246	+	0	NA	promoter-TSS (NM_173620)	promoter-TSS (NM_173620)	-7	NM_173620	284004	Hs.744207	NM_173620	ENSG00000169660	HEXDC	-	"hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing"	protein-coding
chr12.26964575.-	chr12	26964575	26964576	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21556	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr17.18575670.+	chr17	18575670	18575671	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	824	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr20.48080592.-	chr20	48080592	48080593	-	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	-18589	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr3.160673491.-	chr3	160673491	160673492	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149192	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr11.132222624.-	chr11	132222624	132222625	-	0	NA	Intergenic	Intergenic	-441912	NM_016522	50863	Hs.504352	NM_001048209	ENSG00000182667	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
chr1.40953671.+	chr1	40953671	40953672	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10369	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr5.91967067.+	chr5	91967067	91967068	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939432	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr7.6210717.+	chr7	6210717	6210718	+	0	NA	"intron (NM_004227, intron 7 of 12)"	CpG-24010	66167	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
chr1.24513582.+	chr1	24513582	24513583	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	183	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr10.104209688.+	chr10	104209688	104209689	+	0	NA	TTS (NM_024886)	TTS (NM_024886)	114	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr16.9185087.+	chr16	9185087	9185088	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-450	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr11.16587528.-	chr11	16587528	16587529	-	0	NA	Intergenic	AluY|SINE|Alu	89593	NM_033326	55553	Hs.368226	NM_001145811	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
chr19.38673722.+	chr19	38673722	38673723	+	0	NA	"intron (NM_015073, intron 16 of 21)"	L2a|LINE|L2	41168	NM_001135155	8193	Hs.631576	NM_001135155	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	"D4, zinc and double PHD fingers family 1"	protein-coding
chr16.81849440.-	chr16	81849440	81849441	-	0	NA	"intron (NM_002661, intron 2 of 32)"	AluSz|SINE|Alu	-36541	NM_002661	5336	Hs.413111	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3	"phospholipase C, gamma 2 (phosphatidylinositol-specific)"	protein-coding
chr17.7183183.+	chr17	7183183	7183184	+	0	NA	Intergenic	AluSx|SINE|Alu	-1871	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr17.74632769.-	chr17	74632769	74632770	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7125	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr10.43563221.-	chr10	43563221	43563222	-	0	NA	Intergenic	Intergenic	9296	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr11.16894159.+	chr11	16894159	16894160	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	134011	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr2.239408635.+	chr2	239408635	239408636	+	0	NA	Intergenic	Intergenic	55505	NR_037809	151171	Hs.652076	NR_037809	ENSG00000225493	LOC151171	-	uncharacterized LOC151171	miscRNA
chr22.39040966.+	chr22	39040966	39040967	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11668	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr11.118672121.+	chr11	118672121	118672122	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10149	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr13.31023975.-	chr13	31023975	31023976	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16106	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr16.4337495.-	chr16	4337495	4337496	-	0	NA	Intergenic	AluSq2|SINE|Alu	14494	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4 (activating enhancer binding protein 4)	protein-coding
chr9.8857435.+	chr9	8857435	8857436	+	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	-123489	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr16.78282834.+	chr16	78282834	78282835	+	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	149507	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr3.10290150.-	chr3	10290150	10290151	-	0	NA	promoter-TSS (NM_014760)	promoter-TSS (NM_014760)	27	NM_014760	9797	Hs.475401	NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
chrX.13062333.-	chrX	13062333	13062334	-	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	-584	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr16.63709801.-	chr16	63709801	63709802	-	0	NA	Intergenic	AluY|SINE|Alu	-1446118	NM_001797	1009	Hs.116471	NM_001797		CDH11	CAD11|CDHOB|OB|OSF-4	"cadherin 11, type 2, OB-cadherin (osteoblast)"	protein-coding
chr19.33557650.-	chr19	33557650	33557651	-	0	NA	Intergenic	Intergenic	1826	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr10.123791043.-	chr10	123791043	123791044	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42354	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr17.4697346.+	chr17	4697346	4697347	+	0	NA	Intergenic	AluY|SINE|Alu	-2093	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr3.132757893.-	chr3	132757893	132757894	-	0	NA	"intron (NM_023943, intron 1 of 5)"	CpG	-722	NM_023943	66000	Hs.191616	NM_001136469	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
chr4.188471104.-	chr4	188471104	188471105	-	0	NA	Intergenic	AluSg|SINE|Alu	44337	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr7.64349801.+	chr7	64349801	64349802	+	0	NA	Intergenic	CpG	-13819	NR_003099	10793	Hs.520889	NM_021148		ZNF273	HZF9	zinc finger protein 273	protein-coding
chr9.128170612.-	chr9	128170612	128170613	-	0	NA	Intergenic	CpG	-146501	NM_015635	26130	Hs.495134	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
chr17.74707140.+	chr17	74707140	74707141	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-84	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr17.4871232.+	chr17	4871232	4871233	+	0	NA	promoter-TSS (NM_004890)	promoter-TSS (NM_004890)	-100	NM_004890	9552	Hs.90436	NM_004890	ENSG00000091640	SPAG7	ACRP|FSA-1	sperm associated antigen 7	protein-coding
chr10.126538799.-	chr10	126538799	126538800	-	0	NA	Intergenic	AluSc|SINE|Alu	-48445	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr19.34958630.+	chr19	34958630	34958631	+	0	NA	"intron (NM_005499, intron 16 of 16)"	AluSx3|SINE|Alu	-14250	NM_001080436	126374	Hs.585010	NM_001080436		WTIP	-	Wilms tumor 1 interacting protein	protein-coding
chr15.26266266.-	chr15	26266266	26266267	-	0	NA	"intron (NR_040082, intron 2 of 4)"	AluSx1|SINE|Alu	94694	NR_038851	503519	Hs.371380	NR_038851	ENSG00000259150	LOC503519	-	uncharacterized LOC503519	miscRNA
chr19.47628024.+	chr19	47628024	47628025	+	0	NA	Intergenic	AluY|SINE|Alu	-6056	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr1.153574095.-	chr1	153574095	153574096	-	0	NA	Intergenic	AluY|SINE|Alu	-11419	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr15.92396111.+	chr15	92396111	92396112	+	0	NA	promoter-TSS (NM_013272)	promoter-TSS (NM_013272)	-827	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr17.44286165.+	chr17	44286165	44286166	+	0	NA	"intron (NM_001193465, intron 2 of 15).2"	AluSz|SINE|Alu	15226	NR_034172	644246	Hs.644600	NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	miscRNA
chr6.160535649.-	chr6	160535649	160535650	-	0	NA	Intergenic	LTR12C|LTR|ERV1	7214	NM_003057	6580	Hs.117367	NM_003057	ENSG00000175003	SLC22A1	HOCT1|OCT1|oct1_cds	"solute carrier family 22 (organic cation transporter), member 1"	protein-coding
chr13.45945038.+	chr13	45945038	45945039	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29558	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr1.156575125.+	chr1	156575125	156575126	+	0	NA	Intergenic	AluSx|SINE|Alu	-3846	NM_015590	54865	Hs.193832	NM_017725	ENSG00000160818	GPATCH4	GPATC4	G patch domain containing 4	protein-coding
chr2.24809178.-	chr2	24809178	24809179	-	0	NA	"intron (NM_003743, intron 1 of 20)"	FLAM_A|SINE|Alu	-1832	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
chr19.50033342.-	chr19	50033342	50033343	-	0	NA	"intron (NM_020650, intron 2 of 6)"	AluSx4|SINE|Alu	-2467	NM_020650	57333	Hs.567550	NM_020650	ENSG00000142552	RCN3	RLP49	"reticulocalbin 3, EF-hand calcium binding domain"	protein-coding
chr14.51173173.+	chr14	51173173	51173174	+	0	NA	Intergenic	AluYa5|SINE|Alu	-38102	NM_021818	60485	Hs.706933	NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador homolog 1 (Drosophila)	protein-coding
chr11.117973596.+	chr11	117973596	117973597	+	0	NA	"intron (NM_019894, intron 3 of 12)"	MIRc|SINE|MIR	-16088	NR_038318	100526771	Hs.627426	NR_038318		TMPRSS4-AS1	-	TMPRSS4 antisense RNA 1	miscRNA
chr12.9892343.-	chr12	9892343	9892344	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6448	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr8.60674621.-	chr8	60674621	60674622	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519333	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr2.31691900.+	chr2	31691900	31691901	+	0	NA	Intergenic	AluY|SINE|Alu	-54289	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr2.232557219.+	chr2	232557219	232557220	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16016	NM_002823	5757	Hs.459927	NM_001099285	ENSG00000187514	PTMA	TMSA	"prothymosin, alpha"	protein-coding
chr9.76965991.+	chr9	76965991	76965992	+	0	NA	Intergenic	AluSp|SINE|Alu	-146261	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr12.4382902.+	chr12	4382902	4382903	+	0	NA	promoter-TSS (NM_001759)	promoter-TSS (NM_001759)	0	NM_001759	894	Hs.376071	NM_001759	ENSG00000118971	CCND2	KIAK0002	cyclin D2	protein-coding
chr13.114026816.-	chr13	114026816	114026817	-	0	NA	Intergenic	AluSg|SINE|Alu	8353	NM_024719	79774	Hs.170904	NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
chr19.4472712.+	chr19	4472712	4472713	+	0	NA	"intron (NM_001001520, intron 1 of 16)"	CpG	457	NM_032631	84717	Hs.43071	NM_001001520	ENSG00000167674	HDGFRP2	HDGF2	hepatoma-derived growth factor-related protein 2	protein-coding
chr19.2492324.-	chr19	2492324	2492325	-	0	NA	Intergenic	AluSz|SINE|Alu	-16201	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr2.71357868.+	chr2	71357868	71357869	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	424	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr18.7360825.+	chr18	7360825	7360826	+	0	NA	Intergenic	LTR12C|LTR|ERV1	129688	NM_001105581	339291	Hs.647588	NM_001105581	ENSG00000206422	LRRC30	-	leucine rich repeat containing 30	protein-coding
chr11.134026106.+	chr11	134026106	134026107	+	0	NA	"intron (NM_015261, intron 32 of 34)"	"intron (NM_015261, intron 32 of 34)"	68320	NM_015261	23310	Hs.438550	NM_015261	ENSG00000151503	NCAPD3	CAP-D3|hCAP-D3|hHCP-6|hcp-6	"non-SMC condensin II complex, subunit D3"	protein-coding
chr11.2051331.+	chr11	2051331	2051332	+	0	NA	Intergenic	Intergenic	-32266	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr16.4034633.+	chr16	4034633	4034634	+	0	NA	"intron (NM_001116, intron 6 of 10)"	MIR|SINE|MIR	-104512	NM_004380	1387	Hs.459759	NM_001079846	ENSG00000005339	CREBBP	CBP|KAT3A|RSTS	CREB binding protein	protein-coding
chr10.123791053.-	chr10	123791053	123791054	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42364	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr13.112722096.-	chr13	112722096	112722097	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-183	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr6.149638366.-	chr6	149638366	149638367	-	0	NA	Intergenic	CpG	1070	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr4.5892158.-	chr4	5892158	5892159	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1843	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr8.6565605.-	chr8	6565605	6565606	-	0	NA	promoter-TSS (NM_018361)	promoter-TSS (NM_018361)	273	NM_018361	55326	Hs.624002	NM_018361		AGPAT5	1AGPAT5|LPAATE	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding
chr2.160212250.+	chr2	160212250	160212251	+	0	NA	"intron (NM_013450, intron 27 of 36)"	L1PA7|LINE|L1	-69014	NM_001128212	151525	Hs.20848	NM_001128212	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	"WD repeat, sterile alpha motif and U-box domain containing 1"	protein-coding
chr21.9574773.+	chr21	9574773	9574774	+	0	NA	Intergenic	AluYc3|SINE|Alu	-251059	NR_037421	100500862		NR_037421		MIR3648	-	microRNA 3648	miscRNA
chr13.21644836.+	chr13	21644836	21644837	+	0	NA	Intergenic	AluSx|SINE|Alu	-9114	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr14.38245416.+	chr14	38245416	38245417	+	0	NA	Intergenic	AluYc|SINE|Alu	-181091	NM_004496	3169	Hs.163484	NM_004496	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
chr14.74246871.-	chr14	74246871	74246872	-	0	NA	"intron (NM_001043318, intron 1 of 11)"	AluY|SINE|Alu	-7025	NM_001043318	91748	Hs.743376	NM_001043318	ENSG00000156030	ELMSAN1	C14orf117|C14orf43|LSR68|c14_5541	ELM2 and Myb/SANT-like domain containing 1	protein-coding
chr16.86337857.-	chr16	86337857	86337858	-	0	NA	Intergenic	CpG	-17820	NR_038438	146513	Hs.434338	NR_038438	ENSG00000268532	LOC146513	-	uncharacterized LOC146513	miscRNA
chr1.245930569.+	chr1	245930569	245930570	+	0	NA	"intron (NM_001167740, intron 10 of 11)"	"intron (NM_001167740, intron 10 of 11)"	612282	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
chr8.20290504.-	chr8	20290504	20290505	-	0	NA	Intergenic	L2|LINE|L2	-157220	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	miscRNA
chr22.38336407.-	chr22	38336407	38336408	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13247	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr10.133203441.+	chr10	133203441	133203442	+	0	NA	Intergenic	Intergenic	-93457	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr5.17207813.-	chr5	17207813	17207814	-	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	9119	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr2.172959894.+	chr2	172959894	172959895	+	0	NA	Intergenic	CpG	7584	NM_004405	1746	Hs.419	NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
chr12.66636862.+	chr12	66636862	66636863	+	0	NA	"intron (NM_001142523, intron 7 of 10)"	"intron (NM_001142523, intron 7 of 10)"	53884	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr6.99291395.+	chr6	99291395	99291396	+	0	NA	Intergenic	CpG	8815	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
chr12.46411946.-	chr12	46411946	46411947	-	0	NA	Intergenic	LTR12C|LTR|ERV1	27545	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr6.34857468.-	chr6	34857468	34857469	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-430	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr13.31023973.+	chr13	31023973	31023974	+	0	NA	Intergenic	AluSq2|SINE|Alu	16108	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr14.32406435.+	chr14	32406435	32406436	+	0	NA	Intergenic	AluYa5|SINE|Alu	139470	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	miscRNA
chr2.198274039.-	chr2	198274039	198274040	-	0	NA	"intron (NM_012433, intron 7 of 24)"	AluSp|SINE|Alu	-25732	NM_001005526	23451	Hs.632554	NM_001005526	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	"splicing factor 3b, subunit 1, 155kDa"	protein-coding
chr12.33592858.-	chr12	33592858	33592859	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	104	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr5.178658006.+	chr5	178658006	178658007	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114425	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr16.89707653.+	chr16	89707653	89707654	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-16499	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr12.34492639.-	chr12	34492639	34492640	-	0	NA	Intergenic	GSATII|Satellite|centr	-317423	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.153857288.+	chr5	153857288	153857289	+	0	NA	"exon (NM_004821, exon 1 of 2)"	"exon (NM_004821, exon 1 of 2)"	536	NM_004821	9421	Hs.152531	NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
chr1.114299531.+	chr1	114299531	114299532	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2246	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr17.12456639.-	chr17	12456639	12456640	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3354	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chrX.21676535.-	chrX	21676535	21676536	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	87	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr5.57859840.+	chr5	57859840	57859841	+	0	NA	Intergenic	SVA_A|Other|Other	-19099	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr4.177146945.-	chr4	177146945	177146946	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30123	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr1.202183567.-	chr1	202183567	202183568	-	0	NA	"intron (NM_001017404, intron 1 of 15)"	(CGGGG)n|Simple_repeat|Simple_repeat	-284	NM_001017404	59352	Hs.497402	NM_001017403	ENSG00000133067	LGR6	GPCR|VTS20631	leucine-rich repeat containing G protein-coupled receptor 6	protein-coding
chr9.36860050.+	chr9	36860050	36860051	+	0	NA	"intron (NM_016734, intron 8 of 9)"	"intron (NM_016734, intron 8 of 9)"	4255	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr8.146024435.+	chr8	146024435	146024436	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	174	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr2.27357134.-	chr2	27357134	27357135	-	0	NA	"intron (NM_013388, intron 1 of 8)"	CpG	-408	NM_013388	10113	Hs.279784	NM_013388	ENSG00000138073	PREB	SEC12	prolactin regulatory element binding	protein-coding
chrM.6476.+	chrM	6476	6477	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.37145999.-	chr17	37145999	37146000	-	0	NA	Intergenic	AluY|SINE|Alu	22344	NM_001008777	494188	Hs.549536	NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
chr1.120270212.-	chr1	120270212	120270213	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15793	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr5.68438990.-	chr5	68438990	68438991	-	0	NA	Intergenic	AluY|SINE|Alu	23847	NM_031966	891	Hs.23960	NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
chr7.102565273.-	chr7	102565273	102565274	-	0	NA	"intron (NM_145032, intron 10 of 19)"	AluYc|SINE|Alu	-11929	NM_001031692	10234	Hs.567412	NM_001031692	ENSG00000128606	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
chr7.74447198.+	chr7	74447198	74447199	+	0	NA	Intergenic	AluSx1|SINE|Alu	42501	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr9.26215544.+	chr9	26215544	26215545	+	0	NA	Intergenic	SVA_B|Other|Other	148871	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr17.18179051.+	chr17	18179051	18179052	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14627	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr3.126135025.-	chr3	126135025	126135026	-	0	NA	"intron (NM_182628, intron 4 of 16)"	"intron (NM_182628, intron 4 of 16)"	-21243	NM_182628	348807	Hs.591305	NM_182628	ENSG00000163885	CCDC37	-	coiled-coil domain containing 37	protein-coding
chr15.77398207.+	chr15	77398207	77398208	+	0	NA	Intergenic	Intergenic	-34637	NM_198902	10099	Hs.5062	NM_001168412	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
chr3.46709789.-	chr3	46709789	46709790	-	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	-9110	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr6.152129579.-	chr6	152129579	152129580	-	0	NA	"intron (NM_001122742, intron 3 of 9)"	CpG	-765	NM_000125	2099	Hs.208124	NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|Era|NR3A1	estrogen receptor 1	protein-coding
chr17.80622200.+	chr17	80622200	80622201	+	0	NA	"intron (NM_006822, intron 2 of 5)"	"intron (NM_006822, intron 2 of 5)"	-15789	NM_019613	56270	Hs.132161	NM_019613	ENSG00000141580	WDR45B	WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
chr3.122695685.-	chr3	122695685	122695686	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	704	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr14.58614876.-	chr14	58614876	58614877	-	0	NA	"intron (NM_001001872, intron 1 of 7)"	AluSg|SINE|Alu	-3971	NM_001001872	145407	Hs.535420	NM_001001872		C14orf37	c14_5376	chromosome 14 open reading frame 37	protein-coding
chr2.170666395.-	chr2	170666395	170666396	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11073	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr3.13834910.-	chr3	13834910	13834911	-	0	NA	Intergenic	Intergenic	-86708	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr17.19628228.-	chr17	19628228	19628229	-	0	NA	Intergenic	CpG	8185	NM_001256663	146802	Hs.126830	NM_001099646	ENSG00000180638	SLC47A2	MATE2|MATE2-B|MATE2-K|MATE2K	"solute carrier family 47, member 2"	protein-coding
chr21.27382853.-	chr21	27382853	27382854	-	0	NA	"intron (NM_001136016, intron 6 of 16)"	AluSx1|SINE|Alu	-129855	NM_001136016	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
chr17.11197485.+	chr17	11197485	11197486	+	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc|SINE|Alu	52745	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr7.150812740.+	chr7	150812740	150812741	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28914	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr3.164852017.-	chr3	164852017	164852018	-	0	NA	Intergenic	AluY|SINE|Alu	55734	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr18.76189761.+	chr18	76189761	76189762	+	0	NA	Intergenic	CpG	-550514	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr18.24236795.-	chr18	24236795	24236796	-	0	NA	"intron (NM_001258222, intron 1 of 4)"	CpG	-570	NM_001258222	284252	Hs.526630	NM_001136205	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerisation domain containing 1	protein-coding
chr14.101892664.-	chr14	101892664	101892665	-	0	NA	Intergenic	AluY|SINE|Alu	-129349	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr17.18575631.+	chr17	18575631	18575632	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	863	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr3.185305623.+	chr3	185305623	185305624	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1592	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr10.120946053.-	chr10	120946053	120946054	-	0	NA	Intergenic	AluJb|SINE|Alu	7708	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr17.12179814.+	chr17	12179814	12179815	+	0	NA	Intergenic	AluSx3|SINE|Alu	194598	NR_030613	100126313		NR_030613		MIR744	MIRN744|hsa-mir-744	microRNA 744	miscRNA
chr4.96098054.+	chr4	96098054	96098055	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85412	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr3.193893794.-	chr3	193893794	193893795	-	0	NA	Intergenic	AluY|SINE|Alu	-39863	NM_005524	3280	Hs.250666	NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	"hairy and enhancer of split 1, (Drosophila)"	protein-coding
chr5.89746511.-	chr5	89746511	89746512	-	0	NA	Intergenic	AluSz|SINE|Alu	-24074	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr8.141552229.+	chr8	141552229	141552230	+	0	NA	"intron (NM_001164623, intron 14 of 17)"	"intron (NM_001164623, intron 14 of 17)"	30148	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr22.46303150.-	chr22	46303150	46303151	-	0	NA	Intergenic	L2c|LINE|L2	-69858	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr12.38493631.-	chr12	38493631	38493632	-	0	NA	Intergenic	Intergenic	216926	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr14.82366841.-	chr14	82366841	82366842	-	0	NA	Intergenic	AluY|SINE|Alu	366636	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr11.507443.+	chr11	507443	507444	+	0	NA	promoter-TSS (NM_002939)	promoter-TSS (NM_002939)	-160	NM_203387	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
chr1.54966463.-	chr1	54966463	54966464	-	0	NA	Intergenic	AluSq|SINE|Alu	47344	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr7.64198977.+	chr7	64198977	64198978	+	0	NA	Intergenic	SVA_D|Other|Other	-55789	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr19.40696443.+	chr19	40696443	40696444	+	0	NA	Intergenic	AluSx|SINE|Alu	-1208	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr7.810988.+	chr7	810988	810989	+	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	-43675	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr8.8619218.-	chr8	8619218	8619219	-	0	NA	Intergenic	AluJb|SINE|Alu	-59552	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr10.59351223.-	chr10	59351223	59351224	-	0	NA	Intergenic	AluY|SINE|Alu	286904	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr10.59351202.+	chr10	59351202	59351203	+	0	NA	Intergenic	AluY|SINE|Alu	-286883	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr6.34857475.-	chr6	34857475	34857476	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-437	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr17.74894599.+	chr17	74894599	74894600	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25870	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr5.178157707.-	chr5	178157707	178157708	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	4	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr3.1144539.+	chr3	1144539	1144540	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9910	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr17.4926503.-	chr17	4926503	4926504	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12224	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr4.140781168.+	chr4	140781168	140781169	+	0	NA	"intron (NM_018717, intron 3 of 5)"	CpG	194246	NM_002413	4258	Hs.81874	NM_001204366	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
chr6.139132976.+	chr6	139132976	139132977	+	0	NA	"intron (NM_001195037, intron 1 of 20)"	AluSz|SINE|Alu	15728	NM_001195037	345930	Hs.660603	NM_001077706	ENSG00000203734	ECT2L	ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5	epithelial cell transforming sequence 2 oncogene-like	protein-coding
chr5.175898678.-	chr5	175898678	175898679	-	0	NA	"intron (NM_014613, intron 1 of 10)"	AluSq|SINE|Alu	-23322	NM_014613	23197	Hs.484242	NM_014613	ENSG00000113194	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
chr13.112726533.+	chr13	112726533	112726534	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4620	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr8.120762472.-	chr8	120762472	120762473	-	0	NA	"intron (NM_003184, intron 22 of 25)"	AluY|SINE|Alu	-82602	NM_003184	6873	Hs.122752	NM_003184	ENSG00000064313	TAF2	CIF150|TAF2B|TAFII150	"TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa"	protein-coding
chr2.44294804.+	chr2	44294804	44294805	+	0	NA	Intergenic	SVA_D|Other|Other	-71660	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr3.15431307.+	chr3	15431307	15431308	+	0	NA	Intergenic	AluSp|SINE|Alu	37735	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr17.68536092.+	chr17	68536092	68536093	+	0	NA	Intergenic	AluSx3|SINE|Alu	370416	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	"potassium inwardly-rectifying channel, subfamily J, member 2"	protein-coding
chr4.166248590.+	chr4	166248590	166248591	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-228	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr7.128582380.+	chr7	128582380	128582381	+	0	NA	"intron (NM_032643, intron 2 of 8)"	"intron (NM_032643, intron 2 of 8)"	1608	NM_001098627	3663	Hs.521181	NM_001098627	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
chr2.128432641.+	chr2	128432641	128432642	+	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	123	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr18.60986949.-	chr18	60986949	60986950	-	0	NA	promoter-TSS (NM_000657)	promoter-TSS (NM_000657)	336	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr17.4697283.-	chr17	4697283	4697284	-	0	NA	Intergenic	AluY|SINE|Alu	2156	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr4.185174120.-	chr4	185174120	185174121	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35006	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr8.7414172.+	chr8	7414172	7414173	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2454	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr10.28763755.-	chr10	28763755	28763756	-	0	NA	Intergenic	AluYc|SINE|Alu	-57528	NR_033805	220906	Hs.403253	NR_033805		WAC-AS1	-	WAC antisense RNA 1 (head to head)	miscRNA
chr2.240030756.+	chr2	240030756	240030757	+	0	NA	"intron (NM_006037, intron 14 of 26)"	"intron (NM_006037, intron 14 of 26)"	-23134	NR_039643	100616493		NR_039643		MIR4441	-	microRNA 4441	miscRNA
chr10.71415424.-	chr10	71415424	71415425	-	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-25421	NM_145306	219738	Hs.522992	NM_145306	ENSG00000171224	C10orf35	-	chromosome 10 open reading frame 35	protein-coding
chr9.34329565.-	chr9	34329565	34329566	-	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-61	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr1.156527504.+	chr1	156527504	156527505	+	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	14892	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr9.83940584.-	chr9	83940584	83940585	-	0	NA	Intergenic	AluY|SINE|Alu	-363012	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr20.60623998.+	chr20	60623998	60623999	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16868	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr5.40801254.-	chr5	40801254	40801255	-	0	NA	Intergenic	SVA_E|Other|Other	2957	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr3.60261927.-	chr3	60261927	60261928	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluY|SINE|Alu	-975206	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr17.74707129.+	chr17	74707129	74707130	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-73	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chrM.9300.+	chrM	9300	9301	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.11746933.-	chr16	11746933	11746934	-	0	NA	Intergenic	AluSx1|SINE|Alu	15356	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr11.46939950.-	chr11	46939950	46939951	-	0	NA	"5' UTR (NM_002334, exon 1 of 38)"	"5' UTR (NM_002334, exon 1 of 38)"	-223	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
chr15.32298423.-	chr15	32298423	32298424	-	0	NA	Intergenic	AluY|SINE|Alu	24263	NM_000746	1139	Hs.713151	XM_003960575		CHRNA7	CHRNA7-2|NACHRA7	"cholinergic receptor, nicotinic, alpha 7 (neuronal)"	protein-coding
chr3.29051442.-	chr3	29051442	29051443	-	0	NA	Intergenic	AluSc8|SINE|Alu	271361	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr16.1489433.+	chr16	1489433	1489434	+	0	NA	"intron (NM_001143980, intron 6 of 16)"	"intron (NM_001143980, intron 6 of 16)"	5057	NM_001143980	645811	Hs.355232	NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
chr10.46833207.-	chr10	46833207	46833208	-	0	NA	Intergenic	AluY|SINE|Alu	64434	NR_027632	414241	Hs.594331	NR_027632	ENSG00000165874	FAM35BP	FAM35B|bA38L15.1	"family with sequence similarity 35, member A pseudogene"	pseudo
chr1.144931939.+	chr1	144931939	144931940	+	0	NA	promoter-TSS (NM_001002811)	promoter-TSS (NM_001002811)	93	NM_001002811	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr9.34070295.-	chr9	34070295	34070296	-	0	NA	Intergenic	AluSz|SINE|Alu	21348	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr12.118079868.+	chr12	118079868	118079869	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280261	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr7.158284940.+	chr7	158284940	158284941	+	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	40565	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr22.18251540.-	chr22	18251540	18251541	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4515	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr7.3762294.-	chr7	3762294	3762295	-	0	NA	"intron (NM_152744, intron 4 of 44)"	"intron (NM_152744, intron 4 of 44)"	407023	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr12.56127545.-	chr12	56127545	56127546	-	0	NA	Intergenic	AluSg|SINE|Alu	4088	NM_001257389	967	Hs.445570	NM_001257389	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
chr9.138663326.-	chr9	138663326	138663327	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69295	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr12.100804228.-	chr12	100804228	100804229	-	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	-53371	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr7.4028195.+	chr7	4028195	4028196	+	0	NA	"intron (NM_152744, intron 14 of 44)"	"intron (NM_152744, intron 14 of 44)"	-141122	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr2.239047378.+	chr2	239047378	239047379	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	15	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr14.102423028.+	chr14	102423028	102423029	+	0	NA	Intergenic	AluJb|SINE|Alu	-7837	NM_001376	1778	Hs.614080	NM_001376	ENSG00000197102	DYNC1H1	DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|p22	"dynein, cytoplasmic 1, heavy chain 1"	protein-coding
chr9.71772993.-	chr9	71772993	71772994	-	0	NA	"intron (NM_001170414, intron 2 of 21)"	AluSx|SINE|Alu	15978	NM_201629	9414	Hs.736223	NM_001170414	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|X104|ZO2	tight junction protein 2	protein-coding
chr2.134028757.+	chr2	134028757	134028758	+	0	NA	"intron (NM_207363, intron 4 of 19)"	AluY|SINE|Alu	297274	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
chr19.39893535.+	chr19	39893535	39893536	+	0	NA	Intergenic	CpG	-3952	NM_003407	7538	Hs.534052	NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
chr16.84754626.-	chr16	84754626	84754627	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	-21071	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr15.83349588.+	chr15	83349588	83349589	+	0	NA	"intron (NM_004644, intron 7 of 25)"	CpG-8192	29047	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr21.14392466.+	chr21	14392466	14392467	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18021	NR_026916	149992	Hs.579474	NR_026916		ANKRD30BP2	C21orf99|CT85|CTSP-1|CTSP1	ankyrin repeat domain 30B pseudogene 2	pseudo
chr2.232495678.+	chr2	232495678	232495679	+	0	NA	Intergenic	AluSg4|SINE|Alu	38103	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	C2orf57	-	chromosome 2 open reading frame 57	protein-coding
chr19.49186344.-	chr19	49186344	49186345	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10080	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chrX.125299940.+	chrX	125299940	125299941	+	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	140	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr13.114306334.+	chr13	114306334	114306335	+	0	NA	"intron (NM_000705, intron 4 of 6)"	"intron (NM_000705, intron 4 of 6)"	6179	NM_000705	496	Hs.434202	NM_000705	ENSG00000186009	ATP4B	ATP6B	"ATPase, H+/K+ exchanging, beta polypeptide"	protein-coding
chr13.45945052.-	chr13	45945052	45945053	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29572	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr3.164119688.+	chr3	164119688	164119689	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676595	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr8.28242707.-	chr8	28242707	28242708	-	0	NA	"intron (NM_018660, intron 1 of 9)"	"intron (NM_018660, intron 1 of 9)"	-1270	NM_018660	55893	Hs.695998	NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
chr17.78397724.-	chr17	78397724	78397725	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4506	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr3.20070871.+	chr3	20070871	20070872	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10653	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr7.129327242.-	chr7	129327242	129327243	-	0	NA	"intron (NM_001040110, intron 4 of 10)"	AluSx1|SINE|Alu	-57323	NM_001040110	4899	Hs.654363	NM_001040110	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
chr6.134589675.-	chr6	134589675	134589676	-	0	NA	"intron (NM_001143676, intron 1 of 13)"	AluY|SINE|Alu	-49521	NM_001143676	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr2.10198629.+	chr2	10198629	10198630	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14257	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr11.31560769.-	chr11	31560769	31560770	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29472	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr8.89783907.+	chr8	89783907	89783908	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-444190	NM_005941	4325	Hs.546267	NM_005941		MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16 (membrane-inserted)	protein-coding
chrY.13489478.+	chrY	13489478	13489479	+	0	NA	Intergenic	Intergenic	1043911	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr16.89331773.-	chr16	89331773	89331774	-	0	NA	Intergenic	Intergenic	-47662	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chr15.90109034.+	chr15	90109034	90109035	+	0	NA	Intergenic	AluY|SINE|Alu	-9784	NM_152259	90381	Hs.441708	NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1-interacting checkpoint and replication regulator	protein-coding
chr17.79868717.-	chr17	79868717	79868718	-	0	NA	"intron (NM_001184917, intron 1 of 13)"	CpG	-360	NR_033685	5833	Hs.569843	NM_001184917		PCYT2	ET	"phosphate cytidylyltransferase 2, ethanolamine"	protein-coding
chr6.168219495.-	chr6	168219495	168219496	-	0	NA	Intergenic	AluSp|SINE|Alu	-7981	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr16.2839398.+	chr16	2839398	2839399	+	0	NA	Intergenic	AluSc|SINE|Alu	-2690	NM_152891	260429	Hs.280658	NM_152891	ENSG00000103355	PRSS33	EOS	"protease, serine, 33"	protein-coding
chr19.6945171.-	chr19	6945171	6945172	-	0	NA	Intergenic	AluY|SINE|Alu	-45686	NR_024075	326342	Hs.688043	NR_024075	ENSG00000268758	EMR4P	EMR4|FIRE|GPR127|PGR16	"egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene"	pseudo
chr7.821258.+	chr7	821258	821259	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33936	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr6.144589608.+	chr6	144589608	144589609	+	0	NA	Intergenic	AluSc8|SINE|Alu	-23265	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr6.170547772.-	chr6	170547772	170547773	-	0	NA	Intergenic	L2b|LINE|L2	-23885	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr7.95178751.-	chr7	95178751	95178752	-	0	NA	Intergenic	AluY|SINE|Alu	-47174	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr19.33910487.+	chr19	33910487	33910488	+	0	NA	"intron (NM_001166056, intron 7 of 12)"	MIRb|SINE|MIR	45057	NM_001252296	1054	Hs.429666	NM_001252296	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	"CCAAT/enhancer binding protein (C/EBP), gamma"	protein-coding
chr17.45078486.+	chr17	45078486	45078487	+	0	NA	Intergenic	Intergenic	-21872	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr15.41674355.+	chr15	41674355	41674356	+	0	NA	Intergenic	SVA_F|Other|Other	20303	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr16.71926464.-	chr16	71926464	71926465	-	0	NA	Intergenic	AluY|SINE|Alu	1847	NM_001270976	9798	Hs.232194	NM_001270975		IST1	OLC1	increased sodium tolerance 1 homolog (yeast)	protein-coding
chr13.44295711.+	chr13	44295711	44295712	+	0	NA	"intron (NM_017993, intron 1 of 16)"	AluYa5|SINE|Alu	65405	NM_001242863	55068	Hs.128258	NM_001127615	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
chr12.34191977.+	chr12	34191977	34191978	+	0	NA	Intergenic	AluSp|SINE|Alu	16761	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr11.11988570.-	chr11	11988570	11988571	-	0	NA	"exon (NM_013253, exon 6 of 8)"	"exon (NM_013253, exon 6 of 8)"	-41616	NM_001018057	27122	Hs.731954	NM_001018057	ENSG00000050165	DKK3	REIC|RIG	dickkopf 3 homolog (Xenopus laevis)	protein-coding
chr16.49317120.-	chr16	49317120	49317121	-	0	NA	Intergenic	CpG	1378	NM_004352	869	Hs.458423	NM_004352		CBLN1	-	cerebellin 1 precursor	protein-coding
chr6.15189308.-	chr6	15189308	15189309	-	0	NA	Intergenic	SVA_F|Other|Other	56898	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr6.89377989.+	chr6	89377989	89377990	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295359	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr13.45945059.-	chr13	45945059	45945060	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29579	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr2.68031677.-	chr2	68031677	68031678	-	0	NA	Intergenic	AluY|SINE|Alu	-258482	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr22.47959791.-	chr22	47959791	47959792	-	0	NA	Intergenic	Intergenic	-67527	NR_033377	400932	Hs.561058	NM_001001693	ENSG00000205634	FLJ46257	-	uncharacterized LOC400932	miscRNA
chr10.28821786.+	chr10	28821786	28821787	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	364	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr6.158439003.+	chr6	158439003	158439004	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	923	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr3.16306451.-	chr3	16306451	16306452	-	0	NA	promoter-TSS (NM_138381)	promoter-TSS (NM_138381)	-45	NM_001047434	285381	Hs.388087	NM_001047434		DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	"DPH3, KTI11 homolog (S. cerevisiae)"	protein-coding
chr14.39408449.+	chr14	39408449	39408450	+	0	NA	Intergenic	AluY|SINE|Alu	-22363	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	miscRNA
chr18.70912359.-	chr18	70912359	70912360	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19374	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr6.24720958.+	chr6	24720958	24720959	+	0	NA	Intergenic	CpG	-1555	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr8.14882348.-	chr8	14882348	14882349	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171329	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chrX.39680339.+	chrX	39680339	39680340	+	0	NA	Intergenic	CpG	276380	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr2.204121215.+	chr2	204121215	204121216	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18051	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr18.67270873.-	chr18	67270873	67270874	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202589	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr5.1476631.-	chr5	1476631	1476632	-	0	NA	"intron (NM_024830, intron 9 of 13)"	MER5A|DNA|hAT-Charlie	31088	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr1.226350669.-	chr1	226350669	226350670	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23754	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr3.22843211.-	chr3	22843211	22843212	-	0	NA	Intergenic	L1PA2|LINE|L1	401573	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr15.51001807.-	chr15	51001807	51001808	-	0	NA	"intron (NM_032802, intron 14 of 14)"	AluSg|SINE|Alu	22795	NM_017672	54822	Hs.512894	NM_017672		TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK	"transient receptor potential cation channel, subfamily M, member 7"	protein-coding
chr5.32209040.+	chr5	32209040	32209041	+	0	NA	Intergenic	SVA_F|Other|Other	-34615	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
chr16.49498962.-	chr16	49498962	49498963	-	0	NA	Intergenic	CpG	-91154	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr14.105618905.-	chr14	105618905	105618906	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16256	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr13.49426616.+	chr13	49426616	49426617	+	0	NA	Intergenic	AluSp|SINE|Alu	-123432	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr6.33806194.+	chr6	33806194	33806195	+	0	NA	Intergenic	Intergenic	-34401	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr4.162440596.+	chr4	162440596	162440597	+	0	NA	"intron (NM_001128427, intron 10 of 15)"	AluY|SINE|Alu	644590	NM_020116	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr13.20387518.+	chr13	20387518	20387519	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30359	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr7.100963638.+	chr7	100963638	100963639	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1455	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr7.13141792.-	chr7	13141792	13141793	-	0	NA	Intergenic	SVA_D|Other|Other	-414881	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr11.67346424.-	chr11	67346424	67346425	-	0	NA	Intergenic	AluY|SINE|Alu	4642	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr1.161427164.-	chr1	161427164	161427165	-	0	NA	Intergenic	CpG	48041	NM_021642	2212	Hs.352642	NM_001136219	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	"Fc fragment of IgG, low affinity IIa, receptor (CD32)"	protein-coding
chr6.108280012.+	chr6	108280012	108280013	+	0	NA	promoter-TSS (NM_007214)	promoter-TSS (NM_007214)	-530	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr8.21944459.-	chr8	21944459	21944460	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2255	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chr1.54518655.-	chr1	54518655	54518656	-	0	NA	promoter-TSS (NM_153035)	promoter-TSS (NM_153035)	-456	NM_004872	9528	Hs.523262	NM_004872	ENSG00000116209	TMEM59	C1orf8|HSPC001	transmembrane protein 59	protein-coding
chr14.103745955.+	chr14	103745955	103745956	+	0	NA	Intergenic	CpG	-54384	NM_001969	1983	Hs.741278	NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
chr11.66997266.+	chr11	66997266	66997267	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10240	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr6.160985723.-	chr6	160985723	160985724	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53567	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr19.44489496.+	chr19	44489496	44489497	+	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	1174	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr3.158905770.-	chr3	158905770	158905771	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	"intron (NM_001197114, intron 1 of 9)"	85266	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr7.100719588.-	chr7	100719588	100719589	-	0	NA	Intergenic	Intergenic	9198	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr12.112563717.+	chr12	112563717	112563718	+	0	NA	"5' UTR (NM_001143906, exon 1 of 12)"	"5' UTR (NM_001143906, exon 1 of 12)"	368	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr8.56758472.-	chr8	56758472	56758473	-	0	NA	Intergenic	AluSx|SINE|Alu	33914	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr22.45453846.-	chr22	45453846	45453847	-	0	NA	Intergenic	AluY|SINE|Alu	48037	NM_001135862	112885	Hs.254097	NM_001135862	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
chr7.150812771.-	chr7	150812771	150812772	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28945	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr19.18416221.-	chr19	18416221	18416222	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17780	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr22.51001314.-	chr22	51001314	51001315	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-14	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr2.240187913.+	chr2	240187913	240187914	+	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	-39244	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr1.21714341.-	chr1	21714341	21714342	-	0	NA	Intergenic	SVA_F|Other|Other	42307	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr1.20988222.+	chr1	20988222	20988223	+	0	NA	promoter-TSS (NM_005216)	promoter-TSS (NM_005216)	-185	NM_005216	1650	Hs.523145	NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic)	protein-coding
chr20.1317817.+	chr20	1317817	1317818	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-7938	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr5.128197052.+	chr5	128197052	128197053	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104158	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr7.1474608.+	chr7	1474608	1474609	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24501	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr12.106606585.+	chr12	106606585	106606586	+	0	NA	Intergenic	L1PA7|LINE|L1	35128	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr17.4422249.-	chr17	4422249	4422250	-	0	NA	"intron (NM_001124758, intron 2 of 12)"	"intron (NM_001124758, intron 2 of 12)"	-20120	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
chr16.4537781.+	chr16	4537781	4537782	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8078	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr9.36859971.-	chr9	36859971	36859972	-	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	-4334	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr5.175665283.-	chr5	175665283	175665284	-	0	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	87	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr7.95234918.-	chr7	95234918	95234919	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8993	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr16.89034074.+	chr16	89034074	89034075	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9430	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr8.143373414.+	chr8	143373414	143373415	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93697	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr5.178885016.-	chr5	178885016	178885017	-	0	NA	Intergenic	AluY|SINE|Alu	92546	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chr20.13654638.-	chr20	13654638	13654639	-	0	NA	Intergenic	AluY|SINE|Alu	35055	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr7.5610941.+	chr7	5610941	5610942	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21495	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr19.1194642.-	chr19	1194642	1194643	-	0	NA	Intergenic	CpG	11156	NM_000455	6794	Hs.515005	NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
chr2.114361260.-	chr2	114361260	114361261	-	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	-34	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr3.102973973.+	chr3	102973973	102973974	+	0	NA	Intergenic	SVA_D|Other|Other	820114	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr19.42857852.+	chr19	42857852	42857853	+	0	NA	"intron (NM_001410, intron 20 of 40)"	"intron (NM_001410, intron 20 of 40)"	28091	NM_001271938	1954	Hs.132483	NM_001271938	ENSG00000105429	MEGF8	C19orf49|CRPT2|EGFL4|SBP1	multiple EGF-like-domains 8	protein-coding
chr5.140215696.+	chr5	140215696	140215697	+	0	NA	"exon (NM_018910, exon 1 of 4)"	"exon (NM_018910, exon 1 of 4)"	1727	NM_031852	56141	Hs.199343	NM_018910	ENSG00000204963	PCDHA7	CNR4|CNRN4|CNRS4|CRNR4|PCDH-ALPHA7	protocadherin alpha 7	protein-coding
chr17.78559339.-	chr17	78559339	78559340	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40714	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr3.29051438.-	chr3	29051438	29051439	-	0	NA	Intergenic	AluSc8|SINE|Alu	271365	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr10.59351211.+	chr10	59351211	59351212	+	0	NA	Intergenic	AluY|SINE|Alu	-286892	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr10.12344467.+	chr10	12344467	12344468	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47116	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr2.105979899.-	chr2	105979899	105979900	-	0	NA	"exon (NM_001450, exon 5 of 6)"	"exon (NM_001450, exon 5 of 6)"	-25886	NM_024093	79074	Hs.549577	NM_024093		C2orf49	asw	chromosome 2 open reading frame 49	protein-coding
chr2.120775619.+	chr2	120775619	120775620	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4834	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr1.937285.-	chr1	937285	937286	-	0	NA	Intergenic	CpG-24	1733	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr12.6514955.-	chr12	6514955	6514956	-	0	NA	Intergenic	AluSx|SINE|Alu	-21756	NM_002342	4055	Hs.1116	NM_001270987	ENSG00000111321	LTBR	CD18|D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	"lymphotoxin beta receptor (TNFR superfamily, member 3)"	protein-coding
chr15.28926648.+	chr15	28926648	28926649	+	0	NA	"intron (NR_036443, intron 12 of 13)"	AluY|SINE|Alu	27060	NR_036443	440248	Hs.732630	NR_036443	ENSG00000206149	HERC2P9	-	hect domain and RLD 2 pseudogene 9	pseudo
chr7.139154936.+	chr7	139154936	139154937	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluSc|SINE|Alu	13521	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr3.128194231.-	chr3	128194231	128194232	-	0	NA	Intergenic	Intergenic	8140	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr9.90885001.-	chr9	90885001	90885002	-	0	NA	Intergenic	AluY|SINE|Alu	118296	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr1.78230548.+	chr1	78230548	78230549	+	0	NA	Intergenic	AluSz|SINE|Alu	-4984	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr5.57859585.-	chr5	57859585	57859586	-	0	NA	Intergenic	SVA_A|Other|Other	19354	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr11.64837489.+	chr11	64837489	64837490	+	0	NA	Intergenic	Intergenic	-11480	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr5.1770131.-	chr5	1770131	1770132	-	0	NA	Intergenic	L1MB5|LINE|L1	-29825	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr20.62029228.+	chr20	62029228	62029229	+	0	NA	Intergenic	Intergenic	-36480	NM_001256573	1137	Hs.10734	NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	"cholinergic receptor, nicotinic, alpha 4 (neuronal)"	protein-coding
chr4.1244454.+	chr4	1244454	1244455	+	0	NA	"non-coding (NR_033339, exon 2 of 2)"	"non-coding (NR_033339, exon 2 of 2)"	1226	NR_033339	92070	Hs.561314	NM_052861		CTBP1-AS1	C4orf42	CTBP1 antisense RNA 1	miscRNA
chr15.55790559.-	chr15	55790559	55790560	-	0	NA	"non-coding (NR_037923, exon 1 of 16)"	"non-coding (NR_037923, exon 1 of 16)"	-223	NR_037923	100533483	Hs.285051	NR_037923		DYX1C1-CCPG1	-	DYX1C1-CCPG1 readthrough (non-protein coding)	miscRNA
chr3.36494738.-	chr3	36494738	36494739	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72641	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr16.87799868.+	chr16	87799868	87799869	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-270	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr22.50655084.+	chr22	50655084	50655085	+	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	15676	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr17.48422557.-	chr17	48422557	48422558	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	836	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr9.108210417.-	chr9	108210417	108210418	-	0	NA	promoter-TSS (NM_207647)	promoter-TSS (NM_207647)	-92	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr20.18592658.-	chr20	18592658	18592659	-	0	NA	"intron (NM_080820, intron 3 of 5)"	AluSg4|SINE|Alu	-24102	NM_080820	92675	Hs.659442	NM_080820	ENSG00000125821	DTD1	C20orf88|DUEB|HARS2|bA379J5.3|bA555E18.1|pqn-68	D-tyrosyl-tRNA deacylase 1	protein-coding
chr18.29434805.+	chr18	29434805	29434806	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88286	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr9.44792237.-	chr9	44792237	44792238	-	0	NA	Intergenic	AluSq2|SINE|Alu	197999	NR_027421	100132948	Hs.645763	NR_027421	ENSG00000154537	FAM27C	FAM27A3|bA374M1.5	"family with sequence similarity 27, member C"	miscRNA
chr8.100115810.+	chr8	100115810	100115811	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90316	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr8.145770739.-	chr8	145770739	145770740	-	0	NA	"exon (NM_025251, exon 7 of 13)"	"exon (NM_025251, exon 7 of 13)"	16281	NM_001001795	414919	Hs.105685	NM_001001795		C8orf82	-	chromosome 8 open reading frame 82	protein-coding
chr6.168149235.-	chr6	168149235	168149236	-	0	NA	Intergenic	Intergenic	-48304	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr18.23534149.+	chr18	23534149	23534150	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	136462	NM_001007559	6760	Hs.129261	NM_001007559	ENSG00000141380	SS18	SSXT|SYT	"synovial sarcoma translocation, chromosome 18"	protein-coding
chr11.9243377.+	chr11	9243377	9243378	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43496	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr3.13521253.+	chr3	13521253	13521254	+	0	NA	promoter-TSS (NM_024827)	promoter-TSS (NM_024827)	-462	NM_024827	79885	Hs.744132	NM_001136041	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
chr7.2966819.-	chr7	2966819	2966820	-	0	NA	"intron (NM_032415, intron 13 of 24)"	"intron (NM_032415, intron 13 of 24)"	82860	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr10.8534175.+	chr10	8534175	8534176	+	0	NA	Intergenic	AluY|SINE|Alu	437508	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr16.8974154.+	chr16	8974154	8974155	+	0	NA	Intergenic	Intergenic	-11291	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr5.1724936.-	chr5	1724936	1724937	-	0	NA	Intergenic	MER70B|LTR|ERVL	15953	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	miscRNA
chr2.173941040.-	chr2	173941040	173941041	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-475	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr14.76888656.-	chr14	76888656	76888657	-	0	NA	"intron (NM_004452, intron 3 of 10)"	AluSc|SINE|Alu	-50966	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen-related receptor beta	protein-coding
chr4.103422396.-	chr4	103422396	103422397	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	90	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr9.130734365.-	chr9	130734365	130734366	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8447	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr18.34900244.-	chr18	34900244	34900245	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	AluY|SINE|Alu	-245756	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr13.72731936.-	chr13	72731936	72731937	-	0	NA	Intergenic	AluY|SINE|Alu	290606	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr17.80687688.+	chr17	80687688	80687689	+	0	NA	Intergenic	CpG	-5764	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr16.10077497.-	chr16	10077497	10077498	-	0	NA	"intron (NM_001134408, intron 2 of 13)"	AluY|SINE|Alu	-198427	NM_001134408	2903	Hs.411472	NM_000833	ENSG00000183454	GRIN2A	EPND|GluN2A|NMDAR2A|NR2A	"glutamate receptor, ionotropic, N-methyl D-aspartate 2A"	protein-coding
chr9.83940626.-	chr9	83940626	83940627	-	0	NA	Intergenic	AluY|SINE|Alu	-362970	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr2.242530122.+	chr2	242530122	242530123	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	26794	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr19.58932946.+	chr19	58932946	58932947	+	0	NA	Intergenic	AluSg|SINE|Alu	12883	NM_173548	201514	Hs.439551	NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
chr5.130576907.-	chr5	130576907	130576908	-	0	NA	Intergenic	AluY|SINE|Alu	22795	NM_020240	56990	Hs.713870	NM_001038702	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
chrX.49682935.+	chrX	49682935	49682936	+	0	NA	Intergenic	AluSz|SINE|Alu	-4290	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr6.134540787.+	chr6	134540787	134540788	+	0	NA	"intron (NM_001143676, intron 2 of 13)"	AluSp|SINE|Alu	-41777	NM_001143677	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr14.71721116.+	chr14	71721116	71721117	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-143938	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	"small nucleolar RNA, C/D box 56B"	snoRNA
chr8.58122868.+	chr8	58122868	58122869	+	0	NA	Intergenic	MER50|LTR|ERV1	-8780	NR_038235	100507651	Hs.631151	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	miscRNA
chr8.133680837.+	chr8	133680837	133680838	+	0	NA	"intron (NR_073525, intron 1 of 12)"	AluY|SINE|Alu	7026	NR_073525	23639	Hs.591865	NM_012472	ENSG00000129295	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
chr1.40953737.-	chr1	40953737	40953738	-	0	NA	"intron (NM_198494, intron 3 of 5)"	"intron (NM_198494, intron 3 of 5)"	-10435	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr1.245317789.+	chr1	245317789	245317790	+	0	NA	promoter-TSS (NM_018012)	promoter-TSS (NM_018012)	-498	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
chr8.94805101.-	chr8	94805101	94805102	-	0	NA	"intron (NM_153704, intron 15 of 27)"	AluY|SINE|Alu	-38029	NM_001142301	91147	Hs.116240	NM_001142301	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
chr1.6661623.-	chr1	6661623	6661624	-	0	NA	"intron (NM_014851, intron 1 of 3)"	"intron (NM_014851, intron 1 of 3)"	-1306	NM_014851	9903	Hs.7764	NM_014851	ENSG00000162413	KLHL21	-	kelch-like family member 21	protein-coding
chr17.15441828.+	chr17	15441828	15441829	+	0	NA	"3' UTR (NM_001135036, exon 6 of 6)"	"3' UTR (NM_001135036, exon 6 of 6)"	25117	NR_037924	100533496	Hs.744260	NM_001204478	ENSG00000259024	TVP23C-CDRT4	FAM18B2-CDRT4	TVP23C-CDRT4 readthrough	protein-coding
chr17.65335491.-	chr17	65335491	65335492	-	0	NA	Intergenic	AluSx|SINE|Alu	-27230	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr5.179383867.-	chr5	179383867	179383868	-	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	49011	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr10.133869260.+	chr10	133869260	133869261	+	0	NA	Intergenic	Intergenic	-49053	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr2.92172353.+	chr2	92172353	92172354	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43194	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr16.31932497.-	chr16	31932497	31932498	-	0	NA	Intergenic	AluY|SINE|Alu	-47418	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr19.49964890.+	chr19	49964890	49964891	+	0	NA	"exon (NM_153329, exon 6 of 17)"	"exon (NM_153329, exon 6 of 17)"	8417	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chrX.68956258.+	chrX	68956258	68956259	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120347	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr11.134349384.+	chr11	134349384	134349385	+	0	NA	"intron (NR_033852, intron 3 of 5)"	"intron (NR_033852, intron 3 of 5)"	43008	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr1.40953663.+	chr1	40953663	40953664	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10361	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr16.723806.+	chr16	723806	723807	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2269	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr9.80898828.+	chr9	80898828	80898829	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13231	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr1.15927956.-	chr1	15927956	15927957	-	0	NA	Intergenic	AluSg4|SINE|Alu	15997	NM_032341	84301	Hs.718857	NM_032341		DDI2	RP4-680D5.5	DNA-damage inducible 1 homolog 2 (S. cerevisiae)	protein-coding
chrX.39680363.+	chrX	39680363	39680364	+	0	NA	Intergenic	CpG	276356	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr1.217964065.+	chr1	217964065	217964066	+	0	NA	"intron (NM_138796, intron 8 of 10)"	AluYc|SINE|Alu	-102177	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr16.90029483.+	chr16	90029483	90029484	+	0	NA	"intron (NM_001242818, intron 9 of 12)"	"intron (NM_001242818, intron 9 of 12)"	-9505	NR_003227	172	Hs.534773	NM_001031805	ENSG00000223959	AFG3L1P	AFG3|AFG3L1	"AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene"	pseudo
chr9.120507372.-	chr9	120507372	120507373	-	0	NA	Intergenic	CpG	-40919	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr2.240371688.-	chr2	240371688	240371689	-	0	NA	Intergenic	SVA_D|Other|Other	49045	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.8858125.-	chr9	8858125	8858126	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124179	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr19.9311203.+	chr19	9311203	9311204	+	0	NA	Intergenic	AluSc8|SINE|Alu	14344	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr16.443624.-	chr16	443624	443625	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3568	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr8.30590111.+	chr8	30590111	30590112	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4625	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr13.103088647.-	chr13	103088647	103088648	-	0	NA	Intergenic	AluY|SINE|Alu	34523	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr14.102109481.+	chr14	102109481	102109482	+	0	NA	Intergenic	AluY|SINE|Alu	81793	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr2.120775622.+	chr2	120775622	120775623	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4837	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr2.227660835.+	chr2	227660835	227660836	+	0	NA	"exon (NM_005544, exon 1 of 2)"	"exon (NM_005544, exon 1 of 2)"	2671	NM_005544	3667	Hs.471508	NM_005544		IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
chr4.65343985.+	chr4	65343985	65343986	+	0	NA	Intergenic	AluY|SINE|Alu	-68807	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr16.87799727.+	chr16	87799727	87799728	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-129	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr4.7735587.-	chr4	7735587	7735588	-	0	NA	"intron (NM_020777, intron 24 of 26)"	"intron (NM_020777, intron 24 of 26)"	20230	NR_026892	84740	Hs.663029	NM_032654		AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	miscRNA
chr8.146017417.+	chr8	146017417	146017418	+	0	NA	"exon (NM_000973, exon 2 of 6)"	"exon (NM_000973, exon 2 of 6)"	312	NM_033301	6132	Hs.178551	NM_000973	ENSG00000161016	RPL8	L8	ribosomal protein L8	protein-coding
chr14.105134524.-	chr14	105134524	105134525	-	0	NA	Intergenic	AluSz|SINE|Alu	-9562	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr13.115049810.+	chr13	115049810	115049811	+	0	NA	"intron (NM_080687, intron 3 of 8)"	AluSg|SINE|Alu	2751	NM_023011	65110	Hs.533855	NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding
chr13.21766680.+	chr13	21766680	21766681	+	0	NA	Intergenic	AluY|SINE|Alu	-15939	NM_145061	221150	Hs.88523	NM_001166017	ENSG00000165480	SKA3	C13orf3|RAMA1	spindle and kinetochore associated complex subunit 3	protein-coding
chr10.12344476.-	chr10	12344476	12344477	-	0	NA	Intergenic	AluSc8|SINE|Alu	47107	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr17.1165719.+	chr17	1165719	1165720	+	0	NA	Intergenic	AluSg|SINE|Alu	-8139	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr17.42774538.-	chr17	42774538	42774539	-	0	NA	Intergenic	AluY|SINE|Alu	7373	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chr10.59351208.+	chr10	59351208	59351209	+	0	NA	Intergenic	AluY|SINE|Alu	-286889	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr7.2092593.-	chr7	2092593	2092594	-	0	NA	"intron (NM_001013836, intron 12 of 18)"	"intron (NM_001013836, intron 12 of 18)"	-179990	NM_001013836	8379	Hs.654838	NM_001013836	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
chr1.32919063.+	chr1	32919063	32919064	+	0	NA	Intergenic	AluSx|SINE|Alu	-11595	NM_001145720	728116	Hs.647658	NM_001145720	ENSG00000215897	ZBTB8B	RP1-27O5.1|ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
chr7.124427324.+	chr7	124427324	124427325	+	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	3540	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr3.93689445.-	chr3	93689445	93689446	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3489	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr9.36596645.-	chr9	36596645	36596646	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23786	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr7.158268159.+	chr7	158268159	158268160	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57346	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr2.204121204.+	chr2	204121204	204121205	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18040	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr4.183981852.-	chr4	183981852	183981853	-	0	NA	Intergenic	AluJb|SINE|Alu	-23034	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	"family with sequence similarity 92, member A3"	pseudo
chr9.137677805.+	chr9	137677805	137677806	+	0	NA	"intron (NM_000093, intron 30 of 65)"	"intron (NM_000093, intron 30 of 65)"	63410	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr8.101661666.-	chr8	101661666	101661667	-	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	-227	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr13.77954562.+	chr13	77954562	77954563	+	0	NA	Intergenic	AluSc|SINE|Alu	-53385	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr9.34296140.-	chr9	34296140	34296141	-	0	NA	"intron (NM_194313, intron 4 of 12)"	AluY|SINE|Alu	-33058	NM_194313	347240	Hs.710246	NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
chr16.341102.-	chr16	341102	341103	-	0	NA	"intron (NM_181050, intron 8 of 9)"	CpG	-7984	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr17.7077129.-	chr17	7077129	7077130	-	0	NA	"exon (NM_001197216, exon 8 of 8)"	"exon (NM_001197216, exon 8 of 8)"	-5754	NM_001671	432	Hs.731669	NM_001197216	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
chr18.20879347.+	chr18	20879347	20879348	+	0	NA	"intron (NM_032933, intron 14 of 14)"	L3|LINE|CR1	138578	NM_032933	85019	Hs.137562	NM_032933	ENSG00000134490	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
chr16.3019437.-	chr16	3019437	3019438	-	0	NA	promoter-TSS (NM_152341)	promoter-TSS (NM_152341)	-95	NM_152341	124222	Hs.351474	NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member IV	protein-coding
chr10.126431902.-	chr10	126431902	126431903	-	0	NA	"intron (NM_014661, intron 1 of 4)"	CpG	-1028	NM_014661	9679	Hs.129195	NM_014661	ENSG00000189319	FAM53B	KIAA0140|RP11-12J10.2|bA12J10.2	"family with sequence similarity 53, member B"	protein-coding
chr6.170547845.-	chr6	170547845	170547846	-	0	NA	Intergenic	L2b|LINE|L2	-23812	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr11.8302392.-	chr11	8302392	8302393	-	0	NA	Intergenic	AluY|SINE|Alu	12210	NM_001270428	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
chr5.178901748.+	chr5	178901748	178901749	+	0	NA	Intergenic	AluY|SINE|Alu	-75814	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chr9.129229371.-	chr9	129229371	129229372	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56588	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr2.62740976.-	chr2	62740976	62740977	-	0	NA	Intergenic	AluY|SINE|Alu	7372	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr5.1137787.-	chr5	1137787	1137788	-	0	NA	Intergenic	Intergenic	25615	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr6.89377974.-	chr6	89377974	89377975	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295374	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr7.74447099.+	chr7	74447099	74447100	+	0	NA	Intergenic	AluSx1|SINE|Alu	42600	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr19.588990.-	chr19	588990	588991	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	903	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr1.101786742.-	chr1	101786742	101786743	-	0	NA	Intergenic	AluY|SINE|Alu	-19709	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr4.3573878.+	chr4	3573878	3573879	+	0	NA	Intergenic	Intergenic	-4718	NR_040045	285492	Hs.145563	NM_173661		FLJ35424	-	uncharacterized FLJ35424	miscRNA
chr5.1586734.+	chr5	1586734	1586735	+	0	NA	"intron (NR_003263, intron 3 of 6)"	SVA_D|Other|Other	7912	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3"	pseudo
chr14.105134413.-	chr14	105134413	105134414	-	0	NA	Intergenic	AluSz|SINE|Alu	-9673	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr14.80915402.-	chr14	80915402	80915403	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218005	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr15.102520525.+	chr15	102520525	102520526	+	0	NA	Intergenic	TAR1|Satellite|telo	-1229	NR_051985	100288486	Hs.644359	NR_034090	ENSG00000248472	DDX11L9	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9	pseudo
chr7.12736885.+	chr7	12736885	12736886	+	0	NA	Intergenic	AluSg|SINE|Alu	9974	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr14.77227716.-	chr14	77227716	77227717	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	519	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr2.171793704.-	chr2	171793704	171793705	-	0	NA	"intron (NM_015530, intron 1 of 9)"	AluSx|SINE|Alu	-8668	NM_015530	26003	Hs.431317	NM_001201428	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	"golgi reassembly stacking protein 2, 55kDa"	protein-coding
chr19.49231785.-	chr19	49231785	49231786	-	0	NA	"intron (NM_017805, intron 5 of 11)"	AluSx3|SINE|Alu	8809	NM_001130915	284358	Hs.191815	NM_001130915	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
chr7.21370307.-	chr7	21370307	21370308	-	0	NA	Intergenic	MER52D|LTR|ERV1	97382	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr2.174830146.-	chr2	174830146	174830147	-	0	NA	"5' UTR (NM_003111, exon 1 of 7)"	"5' UTR (NM_003111, exon 1 of 7)"	-284	NM_001172712	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr6.168149233.-	chr6	168149233	168149234	-	0	NA	Intergenic	Intergenic	-48306	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr1.108113229.-	chr1	108113229	108113230	-	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	-117897	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr16.6394571.-	chr16	6394571	6394572	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluY|SINE|Alu	-325439	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr14.23517164.+	chr14	23517164	23517165	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5788	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr17.80333531.+	chr17	80333531	80333532	+	0	NA	TTS (NM_018949)	TTS (NM_018949)	1330	NM_018949	2837	Hs.192720	NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
chr2.202898595.-	chr2	202898595	202898596	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	715	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr7.142874049.-	chr7	142874049	142874050	-	0	NA	Intergenic	AluSx|SINE|Alu	6463	NM_176881	259285	Hs.553660	NM_176881	ENSG00000236398	TAS2R39	T2R39|T2R57	"taste receptor, type 2, member 39"	protein-coding
chr1.3527840.-	chr1	3527840	3527841	-	0	NA	"5' UTR (NM_001409, exon 1 of 37)"	"5' UTR (NM_001409, exon 1 of 37)"	-219	NM_001409	1953	Hs.593645	NM_001409		MEGF6	EGFL3	multiple EGF-like-domains 6	protein-coding
chr15.41613490.-	chr15	41613490	41613491	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11329	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr6.150275503.+	chr6	150275503	150275504	+	0	NA	Intergenic	CpG	-9640	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr10.74000517.+	chr10	74000517	74000518	+	0	NA	Intergenic	AluJr4|SINE|Alu	-23625	NR_045564	51008	Hs.500007	NM_001198798		ASCC1	ASC1p50|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
chr12.51681447.-	chr12	51681447	51681448	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17245	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr2.194196039.+	chr2	194196039	194196040	+	0	NA	Intergenic	AluSp|SINE|Alu	581468	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071	"PCGEM1, prostate-specific transcript (non-protein coding)"	miscRNA
chr18.24236796.-	chr18	24236796	24236797	-	0	NA	"intron (NM_001258222, intron 1 of 4)"	CpG	-569	NM_001258222	284252	Hs.526630	NM_001136205	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerisation domain containing 1	protein-coding
chr7.13141790.+	chr7	13141790	13141791	+	0	NA	Intergenic	SVA_D|Other|Other	414879	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr10.59351195.+	chr10	59351195	59351196	+	0	NA	Intergenic	AluY|SINE|Alu	-286876	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr12.38553771.-	chr12	38553771	38553772	-	0	NA	Intergenic	GSATX|Satellite|centr	156786	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr9.129229404.+	chr9	129229404	129229405	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56621	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr2.173941053.-	chr2	173941053	173941054	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-488	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr2.90481130.-	chr2	90481130	90481131	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1366845	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr17.4708649.+	chr17	4708649	4708650	+	0	NA	Intergenic	AluSp|SINE|Alu	-1747	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr6.168149217.-	chr6	168149217	168149218	-	0	NA	Intergenic	Intergenic	-48322	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chrX.39680379.-	chrX	39680379	39680380	-	0	NA	Intergenic	CpG	-276340	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr9.26341257.-	chr9	26341257	26341258	-	0	NA	Intergenic	AluSq2|SINE|Alu	-274584	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr7.16632887.-	chr7	16632887	16632888	-	0	NA	Intergenic	AluJb|SINE|Alu	-52555	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr5.168556367.+	chr5	168556367	168556368	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134331	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chr20.35167623.+	chr20	35167623	35167624	+	0	NA	Intergenic	AluY|SINE|Alu	-2264	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr2.10163543.+	chr2	10163543	10163544	+	0	NA	Intergenic	Intergenic	-20139	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr22.50871775.-	chr22	50871775	50871776	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41689	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr12.43781867.+	chr12	43781867	43781868	+	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	163857	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr12.53658239.-	chr12	53658239	53658240	-	0	NA	Intergenic	AluY|SINE|Alu	3844	NM_012291	9700	Hs.153479	NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies homolog 1 (S. cerevisiae)	protein-coding
chr12.52585570.+	chr12	52585570	52585571	+	0	NA	"exon (NM_001081492, exon 1 of 9)"	"exon (NM_001081492, exon 1 of 9)"	214	NM_182507	144501	Hs.140978	NM_001081492	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
chr14.102101598.+	chr14	102101598	102101599	+	0	NA	Intergenic	Intergenic	73910	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr9.138663337.-	chr9	138663337	138663338	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69306	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr6.89378021.-	chr6	89378021	89378022	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295327	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr4.17513694.+	chr4	17513694	17513695	+	0	NA	"5' UTR (NM_000320, exon 1 of 7)"	"5' UTR (NM_000320, exon 1 of 7)"	163	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr15.100080047.-	chr15	100080047	100080048	-	0	NA	Intergenic	AluSq2|SINE|Alu	26086	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr3.22843345.-	chr3	22843345	22843346	-	0	NA	Intergenic	L1PA2|LINE|L1	401439	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr19.16633060.-	chr19	16633060	16633061	-	0	NA	TTS (NM_032207)	TTS (NM_032207)	-20203	NM_006387	10523	Hs.740364	NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
chrX.153095513.+	chrX	153095513	153095514	+	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	490	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr13.50177061.-	chr13	50177061	50177062	-	0	NA	Intergenic	AluY|SINE|Alu	17342	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr20.52362424.-	chr20	52362424	52362425	-	0	NA	Intergenic	AluSx|SINE|Alu	-129824	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr5.92346209.+	chr5	92346209	92346210	+	0	NA	Intergenic	AluSq2|SINE|Alu	560290	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr5.108146237.+	chr5	108146237	108146238	+	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	62714	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chr21.47343948.-	chr21	47343948	47343949	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57715	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr16.58300838.-	chr16	58300838	58300839	-	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	-16998	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr22.32000939.-	chr22	32000939	32000940	-	0	NA	"intron (NM_001258326, intron 18 of 30)"	"intron (NM_001258326, intron 18 of 30)"	-25871	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
chr6.123144209.-	chr6	123144209	123144210	-	0	NA	Intergenic	Intergenic	-34238	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr5.72747326.-	chr5	72747326	72747327	-	0	NA	Intergenic	CpG	2974	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC4	forkhead box D1	protein-coding
chr1.171662959.+	chr1	171662959	171662960	+	0	NA	Intergenic	SVA_C|Other|Other	-41186	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chrX.54544974.-	chrX	54544974	54544975	-	0	NA	Intergenic	AluSx1|SINE|Alu	11670	NM_001184819	54552	Hs.654677	NM_001184819		GNL3L	-	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding
chr19.11463926.+	chr19	11463926	11463927	+	0	NA	"intron (NM_001080503, intron 7 of 10)"	AluSc8|SINE|Alu	-2136	NM_001170635	64748	Hs.6846	NM_001170635	ENSG00000105520	LPPR2	PRG4	lipid phosphate phosphatase-related protein type 2	protein-coding
chr3.38066819.+	chr3	38066819	38066820	+	0	NA	promoter-TSS (NR_024071)	promoter-TSS (NR_024071)	-541	NR_024071	5333	Hs.80776	NM_001130964	ENSG00000187091	PLCD1	NDNC3|PLC-III	"phospholipase C, delta 1"	protein-coding
chr20.47104821.-	chr20	47104821	47104822	-	0	NA	Intergenic	D20S16|Satellite|Satellite	-116167	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr7.5355995.-	chr7	5355995	5355996	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33434	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr15.75494172.+	chr15	75494172	75494173	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-49	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr7.5557976.+	chr7	5557976	5557977	+	0	NA	Intergenic	AluYc|SINE|Alu	-4577	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chrX.42145006.+	chrX	42145006	42145007	+	0	NA	Intergenic	SVA_D|Other|Other	-362719	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chrX.133643965.+	chrX	133643965	133643966	+	0	NA	Intergenic	L1PA10|LINE|L1	30327	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr9.719234.+	chr9	719234	719235	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12428	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr13.99083509.+	chr13	99083509	99083510	+	0	NA	"exon (NM_005766, exon 18 of 27)"	"exon (NM_005766, exon 18 of 27)"	90832	NM_003576	8428	Hs.508514	NM_001032296	ENSG00000102572	STK24	MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
chr15.32298463.-	chr15	32298463	32298464	-	0	NA	Intergenic	AluY|SINE|Alu	24223	NM_000746	1139	Hs.713151	XM_003960575		CHRNA7	CHRNA7-2|NACHRA7	"cholinergic receptor, nicotinic, alpha 7 (neuronal)"	protein-coding
chr15.26543291.+	chr15	26543291	26543292	+	0	NA	Intergenic	LTR12C|LTR|ERV1	182331	NR_038852	503519	Hs.371380	NR_038851	ENSG00000259150	LOC503519	-	uncharacterized LOC503519	miscRNA
chr14.87514408.+	chr14	87514408	87514409	+	0	NA	Intergenic	AluY|SINE|Alu	142286	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LOC283585	-	uncharacterized LOC283585	miscRNA
chr22.25033190.+	chr22	25033190	25033191	+	0	NA	"intron (NR_024494, intron 1 of 6)"	AluSp|SINE|Alu	4308	NR_024494	644165	Hs.730665	NR_024494		BCRP3	BCR3|BCRL3|BCRL6	breakpoint cluster region pseudogene 3	pseudo
chr10.135104706.-	chr10	135104706	135104707	-	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	14299	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr1.176733869.-	chr1	176733869	176733870	-	0	NA	"intron (NM_020318, intron 14 of 22)"	AluY|SINE|Alu	-264712	NR_030163	574441		NR_030163		MIR488	MIRN488|hsa-mir-488	microRNA 488	miscRNA
chr4.55525166.-	chr4	55525166	55525167	-	0	NA	"intron (NM_001093772, intron 1 of 20)"	CpG	-1071	NM_001093772	3815	Hs.479754	NM_000222	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
chr20.45935921.-	chr20	45935921	45935922	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11325	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr6.149638290.-	chr6	149638290	149638291	-	0	NA	Intergenic	CpG	1146	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr14.104339673.-	chr14	104339673	104339674	-	0	NA	Intergenic	AluSz|SINE|Alu	-25615	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr11.126081377.-	chr11	126081377	126081378	-	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	-210	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr3.49368429.-	chr3	49368429	49368430	-	0	NA	"intron (NM_001251877, intron 2 of 6)"	AluY|SINE|Alu	-9107	NM_001251877	7375	Hs.403828	NM_001251877	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
chr16.71814148.-	chr16	71814148	71814149	-	0	NA	"intron (NM_001030007, intron 2 of 23)"	AluSz|SINE|Alu	21758	NR_003059	692111		NR_003059		SNORD71	HBII-239|MIRN768|hsa-mir-768	"small nucleolar RNA, C/D box 71"	snoRNA
chr20.13765857.-	chr20	13765857	13765858	-	0	NA	promoter-TSS (NM_016649)	promoter-TSS (NM_016649)	-185	NR_029377	79133	Hs.472165	NM_001039375	ENSG00000101247	NDUFAF5	C20orf7|bA526K24.2|dJ842G6.1	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 5"	protein-coding
chr7.61969438.+	chr7	61969438	61969439	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	794996	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr19.5409952.+	chr19	5409952	5409953	+	0	NA	Intergenic	AluY|SINE|Alu	-45474	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr19.49242360.+	chr19	49242360	49242361	+	0	NA	"exon (NM_017805, exon 3 of 12)"	"exon (NM_017805, exon 3 of 12)"	1610	NM_017805	54922	Hs.233955	NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
chr1.1139746.-	chr1	1139746	1139747	-	0	NA	"intron (NM_148902, intron 3 of 4)"	"intron (NM_148902, intron 3 of 4)"	-2343	NM_004195	8784	Hs.212680	NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|GITR|GITR-D	"tumor necrosis factor receptor superfamily, member 18"	protein-coding
chr19.49999394.-	chr19	49999394	49999395	-	0	NA	promoter-TSS (NM_001015)	promoter-TSS (NM_001015)	228	NM_001015	6205	Hs.433529	NM_001015	ENSG00000142534	RPS11	S11	ribosomal protein S11	protein-coding
chr4.45824709.-	chr4	45824709	45824710	-	0	NA	Intergenic	AluY|SINE|Alu	-301373	NM_173536	2565	Hs.375051	NM_173536	ENSG00000163285	GABRG1	-	"gamma-aminobutyric acid (GABA) A receptor, gamma 1"	protein-coding
chr15.93426557.-	chr15	93426557	93426558	-	0	NA	promoter-TSS (NR_037602)	promoter-TSS (NR_037602)	-31	NR_037602	100507217	Hs.622504	NR_037600		LOC100507217	-	uncharacterized LOC100507217	miscRNA
chr19.11711137.+	chr19	11711137	11711138	+	0	NA	"intron (NM_145295, intron 1 of 3)"	AluY|SINE|Alu	2902	NM_145295	199692	Hs.526665	NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
chr22.42027276.+	chr22	42027276	42027277	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9981	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr9.139071857.-	chr9	139071857	139071858	-	0	NA	Intergenic	Intergenic	-23147	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr1.26778168.-	chr1	26778168	26778169	-	0	NA	"intron (NM_205861, intron 6 of 8)"	AluY|SINE|Alu	-19395	NM_205861	79947	Hs.369385	NM_001243564	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase	protein-coding
chr7.150812703.-	chr7	150812703	150812704	-	0	NA	"intron (NM_031946, intron 1 of 17)"	GC_rich|Low_complexity|Low_complexity	-28877	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr1.10551181.+	chr1	10551181	10551182	+	0	NA	"intron (NM_004565, intron 1 of 8)"	AluSx|SINE|Alu	16178	NM_004565	5195	Hs.149983	NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
chr10.120426973.-	chr10	120426973	120426974	-	0	NA	Intergenic	AluSp|SINE|Alu	71813	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr6.14941825.+	chr6	14941825	14941826	+	0	NA	Intergenic	AluSx3|SINE|Alu	-304381	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr7.158671022.-	chr7	158671022	158671023	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21753	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr18.77627570.-	chr18	77627570	77627571	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3902	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr5.178157733.+	chr5	178157733	178157734	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-30	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr11.16894125.-	chr11	16894125	16894126	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133977	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr1.64909820.-	chr1	64909820	64909821	-	0	NA	Intergenic	AluSc8|SINE|Alu	26656	NM_020925	57685	Hs.443891	NM_020925	ENSG00000158966	CACHD1	RP4-655E10.1	cache domain containing 1	protein-coding
chr10.12223736.-	chr10	12223736	12223737	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14225	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr2.116681997.-	chr2	116681997	116681998	-	0	NA	Intergenic	AluSx|SINE|Alu	-762313	NM_001004360	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr9.28773095.+	chr9	28773095	28773096	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53792	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr3.148523264.-	chr3	148523264	148523265	-	0	NA	Intergenic	AluY|SINE|Alu	22324	NM_001871	1360	Hs.477891	NM_001871	ENSG00000153002	CPB1	CPB|PASP|PCPB	carboxypeptidase B1 (tissue)	protein-coding
chr5.1021825.-	chr5	1021825	1021826	-	0	NA	"intron (NM_001271082, intron 3 of 10)"	"intron (NM_001271082, intron 3 of 10)"	-12748	NM_001271082	85409	Hs.240951	NM_001271082	ENSG00000145506	NKD2	Naked2	naked cuticle homolog 2 (Drosophila)	protein-coding
chr6.93408711.+	chr6	93408711	93408712	+	0	NA	Intergenic	AluY|SINE|Alu	720589	NM_004440	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK3|HEK11	EPH receptor A7	protein-coding
chrX.93693251.+	chrX	93693251	93693252	+	0	NA	Intergenic	AluY|SINE|Alu	764239	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chr5.17207798.+	chr5	17207798	17207799	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9134	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr7.13141813.-	chr7	13141813	13141814	-	0	NA	Intergenic	SVA_D|Other|Other	-414902	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr18.77627526.+	chr18	77627526	77627527	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3858	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr17.6899464.-	chr17	6899464	6899465	-	0	NA	promoter-TSS (NM_000697)	promoter-TSS (NM_000697)	-80	NM_000697	239	Hs.654431	NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase	protein-coding
chr6.89378010.-	chr6	89378010	89378011	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295338	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr1.26778164.-	chr1	26778164	26778165	-	0	NA	"intron (NM_205861, intron 6 of 8)"	AluY|SINE|Alu	-19391	NM_205861	79947	Hs.369385	NM_001243564	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase	protein-coding
chr16.88772907.+	chr16	88772907	88772908	+	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	16	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr6.114387683.+	chr6	114387683	114387684	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3642	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chr9.34329752.+	chr9	34329752	34329753	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	248	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chrX.86721014.-	chrX	86721014	86721015	-	0	NA	Intergenic	SVA_C|Other|Other	51701	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr22.51001322.+	chr22	51001322	51001323	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	6	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr15.68871826.+	chr15	68871826	68871827	+	0	NA	"intron (NM_006091, intron 1 of 11)"	CpG	518	NM_006091	10391	Hs.551213	NM_001190456	ENSG00000103647	CORO2B	CLIPINC	"coronin, actin binding protein, 2B"	protein-coding
chr8.27127619.+	chr8	27127619	27127620	+	0	NA	Intergenic	AluY|SINE|Alu	-11716	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr14.105618894.-	chr14	105618894	105618895	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16267	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr3.16159886.+	chr3	16159886	16159887	+	0	NA	Intergenic	AluSx|SINE|Alu	-56298	NM_054110	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNT13|GALNT7|GALNTL2|PIH5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chr1.163854840.+	chr1	163854840	163854841	+	0	NA	Intergenic	Intergenic	563117	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr6.153454851.-	chr6	153454851	153454852	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2462	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
chr14.102904531.+	chr14	102904531	102904532	+	0	NA	"exon (NM_014844, exon 10 of 20)"	"exon (NM_014844, exon 10 of 20)"	71597	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr4.177146993.+	chr4	177146993	177146994	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30171	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr1.224671292.+	chr1	224671292	224671293	+	0	NA	Intergenic	AluSz|SINE|Alu	-49291	NM_001115113	80232	Hs.729289	NM_001115113	ENSG00000162923	WDR26	CDW2|GID7|MIP2	WD repeat domain 26	protein-coding
chr2.68031714.-	chr2	68031714	68031715	-	0	NA	Intergenic	AluY|SINE|Alu	-258445	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr17.77239432.-	chr17	77239432	77239433	-	0	NA	"intron (NM_001082575, intron 3 of 14)"	"intron (NM_001082575, intron 3 of 14)"	-168413	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr4.48016940.+	chr4	48016940	48016941	+	0	NA	Intergenic	AluY|SINE|Alu	-1851	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr9.136951717.+	chr9	136951717	136951718	+	0	NA	Intergenic	AluY|SINE|Alu	-18576	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr19.37393274.+	chr19	37393274	37393275	+	0	NA	"intron (NM_001037232, intron 5 of 5)"	AluJb|SINE|Alu	13649	NM_001171979	374899	Hs.720312	NM_001037232	ENSG00000185869	ZNF829	-	zinc finger protein 829	protein-coding
chr8.11312285.+	chr8	11312285	11312286	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11991	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr16.9185047.+	chr16	9185047	9185048	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-490	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr13.24099412.-	chr13	24099412	24099413	-	0	NA	Intergenic	Intergenic	45097	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr10.120946064.+	chr10	120946064	120946065	+	0	NA	Intergenic	Intergenic	-7719	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr2.174828937.-	chr2	174828937	174828938	-	0	NA	promoter-TSS (NM_001017371)	promoter-TSS (NM_001017371)	-10	NM_001017371	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr11.116451240.+	chr11	116451240	116451241	+	0	NA	Intergenic	CpG	192474	NM_032725	84811	Hs.437341	NM_001159736	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
chr9.132329413.+	chr9	132329413	132329414	+	0	NA	Intergenic	L2b|LINE|L2	53642	NM_199350	375759	Hs.124223	NM_199350	ENSG00000179058	C9orf50	-	chromosome 9 open reading frame 50	protein-coding
chr8.126398075.-	chr8	126398075	126398076	-	0	NA	Intergenic	Intergenic	44488	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr15.61838901.+	chr15	61838901	61838902	+	0	NA	Intergenic	AluYc|SINE|Alu	-317399	NM_134261	6095	Hs.655155	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR-related orphan receptor A	protein-coding
chr9.96716937.+	chr9	96716937	96716938	+	0	NA	"intron (NM_021570, intron 1 of 3)"	CpG-26762	671	NM_021570	56033	Hs.164960	NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
chr11.66726131.-	chr11	66726131	66726132	-	0	NA	promoter-TSS (NM_001040716)	promoter-TSS (NM_001040716)	284	NM_000920	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr2.129491292.+	chr2	129491292	129491293	+	0	NA	Intergenic	Intergenic	-415121	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr6.127755463.-	chr6	127755463	127755464	-	0	NA	Intergenic	AluSx1|SINE|Alu	-25072	NM_014702	9729	Hs.319247	NM_014702		KIAA0408	RP3-403A15.2	KIAA0408	protein-coding
chrX.19862951.-	chrX	19862951	19862952	-	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	-42793	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr22.33157193.+	chr22	33157193	33157194	+	0	NA	"intron (NM_001135774, intron 6 of 13)"	MIR3|SINE|MIR	-39609	NM_000362	7078	Hs.644633	NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
chr4.77348111.+	chr4	77348111	77348112	+	0	NA	Intergenic	AluY|SINE|Alu	-8142	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr14.20811177.+	chr14	20811177	20811178	+	0	NA	promoter-TSS (NM_005484)	promoter-TSS (NM_005484)	393	NR_002312	85495	Hs.613102	NR_002312	ENSG00000252678	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	miscRNA
chr18.44499426.+	chr18	44499426	44499427	+	0	NA	Intergenic	AluSp|SINE|Alu	-1931	NM_004671	9063	Hs.657844	NM_004671		PIAS2	ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4	"protein inhibitor of activated STAT, 2"	protein-coding
chr17.9163727.-	chr17	9163727	9163728	-	0	NA	"intron (NM_004853, intron 7 of 7)"	AluSx|SINE|Alu	-238868	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr5.25535472.+	chr5	25535472	25535473	+	0	NA	Intergenic	AluY|SINE|Alu	-694780	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr19.3193998.-	chr19	3193998	3193999	-	0	NA	"intron (NM_020170, intron 3 of 14)"	"intron (NM_020170, intron 3 of 14)"	-8123	NM_020170	56926	Hs.657032	NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
chr20.32757618.+	chr20	32757618	32757619	+	0	NA	Intergenic	AluSc8|SINE|Alu	-57533	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr2.128965897.+	chr2	128965897	128965898	+	0	NA	Intergenic	SVA_F|Other|Other	110274	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr1.194872510.+	chr1	194872510	194872511	+	0	NA	Intergenic	AluSx|SINE|Alu	1679101	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr1.161393130.+	chr1	161393130	161393131	+	0	NA	Intergenic	SVA_D|Other|Other	-55457	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chr18.32074322.-	chr18	32074322	32074323	-	0	NA	"intron (NM_001392, intron 1 of 12)"	GC_rich|Low_complexity|Low_complexity	-1068	NM_032975	1837	Hs.643454	NM_001128175	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	"dystrobrevin, alpha"	protein-coding
chr17.48037706.+	chr17	48037706	48037707	+	0	NA	Intergenic	AluYh9|SINE|Alu	-8856	NM_138281	1748	Hs.591167	NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
chr20.62657601.+	chr20	62657601	62657602	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8096	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr4.49149497.-	chr4	49149497	49149498	-	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-161232	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr3.47411319.-	chr3	47411319	47411320	-	0	NA	Intergenic	AluSq|SINE|Alu	11172	NM_015466	25930	Hs.25524	NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|PTP-TD14	"protein tyrosine phosphatase, non-receptor type 23"	protein-coding
chr8.104645085.-	chr8	104645085	104645086	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132109	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr14.102423002.+	chr14	102423002	102423003	+	0	NA	Intergenic	AluJb|SINE|Alu	-7863	NM_001376	1778	Hs.614080	NM_001376	ENSG00000197102	DYNC1H1	DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|p22	"dynein, cytoplasmic 1, heavy chain 1"	protein-coding
chr2.192374855.-	chr2	192374855	192374856	-	0	NA	Intergenic	AluY|SINE|Alu	167943	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr19.4141893.+	chr19	4141893	4141894	+	0	NA	Intergenic	AluY|SINE|Alu	-11705	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr8.27695123.+	chr8	27695123	27695124	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	226	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr6.21897101.-	chr6	21897101	21897102	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230426	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chrX.133328799.-	chrX	133328799	133328800	-	0	NA	Intergenic	AluSg|SINE|Alu	24491	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr3.133028704.-	chr3	133028704	133028705	-	0	NA	"intron (NM_023943, intron 3 of 5)"	AluYa5|SINE|Alu	90086	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|LIFL-L|PHAKOSIN	"beaded filament structural protein 2, phakinin"	protein-coding
chr15.25149765.+	chr15	25149765	25149766	+	0	NA	"intron (NM_022807, intron 3 of 12)"	AluSx|SINE|Alu	48067	NM_022805	6638	Hs.743549	NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
chr5.178157739.-	chr5	178157739	178157740	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	36	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr4.16565234.-	chr4	16565234	16565235	-	0	NA	"intron (NM_001130834, intron 5 of 8)"	AluY|SINE|Alu	-58420	NR_049865	100847063		NR_049865		MIR548AX	-	microRNA 548ax	miscRNA
chr7.95178742.-	chr7	95178742	95178743	-	0	NA	Intergenic	AluY|SINE|Alu	-47183	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr19.33557635.-	chr19	33557635	33557636	-	0	NA	Intergenic	Intergenic	1811	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr6.24720973.-	chr6	24720973	24720974	-	0	NA	Intergenic	CpG	1570	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr17.35266228.+	chr17	35266228	35266229	+	0	NA	Intergenic	AluSx3|SINE|Alu	-28544	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr16.57898534.-	chr16	57898534	57898535	-	0	NA	Intergenic	AluSg|SINE|Alu	62095	NM_005550	3801	Hs.23131	NM_001130099	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
chr2.207036841.+	chr2	207036841	207036842	+	0	NA	Intergenic	SVA_D|Other|Other	9889	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr22.50959114.-	chr22	50959114	50959115	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4919	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr3.126260569.+	chr3	126260569	126260570	+	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	17189	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr8.41166034.+	chr8	41166034	41166035	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	956	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr22.23523320.-	chr22	23523320	23523321	-	0	NA	"exon (NM_021574, exon 1 of 22)"	"exon (NM_021574, exon 1 of 22)"	-768	NM_004327	613	Hs.715409	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	breakpoint cluster region	protein-coding
chr1.59041994.+	chr1	59041994	59041995	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1172	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr8.61841378.+	chr8	61841378	61841379	+	0	NA	Intergenic	AluY|SINE|Alu	38929	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	miscRNA
chr2.242500490.-	chr2	242500490	242500491	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1932	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr10.116501262.+	chr10	116501262	116501263	+	0	NA	Intergenic	AluY|SINE|Alu	-56848	NM_001003407	3983	Hs.593868	NM_001003407	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
chr20.30432973.-	chr20	30432973	30432974	-	0	NA	"exon (NM_004118, exon 1 of 1)"	"exon (NM_004118, exon 1 of 1)"	-447	NM_004118	2307	Hs.516971	NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
chr1.2798168.-	chr1	2798168	2798169	-	0	NA	Intergenic	Intergenic	91938	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr14.105618886.+	chr14	105618886	105618887	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16275	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr11.64819790.-	chr11	64819790	64819791	-	0	NA	"intron (NM_005468, intron 8 of 17)"	L2c|LINE|L2	-6219	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr5.137550347.+	chr5	137550347	137550348	+	0	NA	Intergenic	AluY|SINE|Alu	-1315	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr6.150275484.+	chr6	150275484	150275485	+	0	NA	Intergenic	CpG	-9659	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr1.228538611.+	chr1	228538611	228538612	+	0	NA	"exon (NM_001098623, exon 77 of 105)"	"exon (NM_001098623, exon 77 of 105)"	55906	NM_145214	81559	Hs.13543	NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
chr1.27595474.-	chr1	27595474	27595475	-	0	NA	"intron (NM_015023, intron 3 of 15)"	AluSx|SINE|Alu	-34467	NM_001276252	23038	Hs.469154	NM_001276252	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
chr6.25384355.-	chr6	25384355	25384356	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104699	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr7.5736172.-	chr7	5736172	5736173	-	0	NA	"intron (NM_207111, intron 13 of 16)"	"intron (NM_207111, intron 13 of 16)"	16080	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr4.177146905.-	chr4	177146905	177146906	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30083	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr2.25758480.-	chr2	25758480	25758481	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114611	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr14.68143310.-	chr14	68143310	68143311	-	0	NA	TTS (NM_016026)	TTS (NM_016026)	1708	NM_006370	10490	Hs.741177	NM_006370		VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
chr4.166248515.+	chr4	166248515	166248516	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-303	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr2.10733426.+	chr2	10733426	10733427	+	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	96687	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr6.159416862.+	chr6	159416862	159416863	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4336	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr3.129081667.-	chr3	129081667	129081668	-	0	NA	Intergenic	SVA_D|Other|Other	-34524	NR_002992	677797	Hs.711399	NR_002992	ENSG00000207088	SNORA7B	ACA7B	"small nucleolar RNA, H/ACA box 7B"	snoRNA
chr18.72799773.+	chr18	72799773	72799774	+	0	NA	Intergenic	CpG	121508	NM_175907	284273	Hs.465433	NM_175907		ZADH2	-	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
chr17.78021107.-	chr17	78021107	78021108	-	0	NA	"exon (NM_001243342, exon 4 of 18)"	"exon (NM_001243342, exon 4 of 18)"	-10676	NM_017950	55036	Hs.202542	NM_001243342	ENSG00000141519	CCDC40	CILD15	coiled-coil domain containing 40	protein-coding
chr10.84429450.+	chr10	84429450	84429451	+	0	NA	"intron (NM_001010848, intron 2 of 8)"	AluY|SINE|Alu	792007	NM_001165973	10718	Hs.125119	NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
chr20.39599133.+	chr20	39599133	39599134	+	0	NA	Intergenic	Intergenic	-58329	NM_003286	7150	Hs.472737	NM_003286	ENSG00000198900	TOP1	TOPI	topoisomerase (DNA) I	protein-coding
chr9.34116712.+	chr9	34116712	34116713	+	0	NA	"intron (NM_015397, intron 2 of 8)"	AluSx1|SINE|Alu	10059	NM_015397	25853	Hs.741270	NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
chr2.1562090.-	chr2	1562090	1562091	-	0	NA	Intergenic	AluY|SINE|Alu	-143910	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr9.131639056.-	chr9	131639056	131639057	-	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	-5298	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr12.50919064.-	chr12	50919064	50919065	-	0	NA	"intron (NM_173602, intron 1 of 37)"	AluY|SINE|Alu	-20296	NM_173602	57609	Hs.505516	NM_173602	ENSG00000066084	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
chr21.35774220.-	chr21	35774220	35774221	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26471	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr19.3220549.+	chr19	3220549	3220550	+	0	NA	Intergenic	AluSz|SINE|Alu	-4152	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr19.2400841.+	chr19	2400841	2400842	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11057	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr1.9832296.+	chr1	9832296	9832297	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52254	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr2.242815321.+	chr2	242815321	242815322	+	0	NA	"exon (NM_173821, exon 2 of 2)"	"exon (NM_173821, exon 2 of 2)"	3435	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr8.1312671.-	chr8	1312671	1312672	-	0	NA	Intergenic	Intergenic	61844	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr3.9398154.-	chr3	9398154	9398155	-	0	NA	Intergenic	AluY|SINE|Alu	6563	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr14.34667885.+	chr14	34667885	34667886	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247601	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr3.49297099.+	chr3	49297099	49297100	+	0	NA	Intergenic	AluY|SINE|Alu	-14454	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	miscRNA
chr1.197234031.+	chr1	197234031	197234032	+	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	-3303	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr2.81982174.+	chr2	81982174	81982175	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101753	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr18.70912371.-	chr18	70912371	70912372	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19362	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr4.4041409.-	chr4	4041409	4041410	-	0	NA	Intergenic	AluYb9|SINE|Alu	84261	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr17.79071333.-	chr17	79071333	79071334	-	0	NA	"intron (NM_017451, intron 6 of 14)"	"intron (NM_017451, intron 6 of 14)"	-27840	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr11.125036369.+	chr11	125036369	125036370	+	0	NA	"intron (NM_022062, intron 1 of 12)"	CpG	1810	NM_022062	63876	Hs.278564	NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
chrX.50657271.+	chrX	50657271	50657272	+	0	NA	"intron (NM_005448, intron 1 of 1)"	AluSq2|SINE|Alu	3536	NM_005448	9210	Hs.532692	NM_005448	ENSG00000130385	BMP15	GDF9B|ODG2|POF4	bone morphogenetic protein 15	protein-coding
chr13.112722107.-	chr13	112722107	112722108	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-194	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr7.104040187.+	chr7	104040187	104040188	+	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	71083	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr3.85080914.+	chr3	85080914	85080915	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72781	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr17.37768998.-	chr17	37768998	37768999	-	0	NA	Intergenic	Intergenic	4823	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr8.609255.-	chr8	609255	609256	-	0	NA	Intergenic	Intergenic	-71971	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr14.105134411.-	chr14	105134411	105134412	-	0	NA	Intergenic	AluSz|SINE|Alu	-9675	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr11.16894182.-	chr11	16894182	16894183	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-134034	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr2.90482978.-	chr2	90482978	90482979	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1364997	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr11.31337013.-	chr11	31337013	31337014	-	0	NA	"intron (NM_181807, intron 3 of 8)"	AluY|SINE|Alu	-54344	NM_181807	341019	Hs.592000	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
chr9.11197009.+	chr9	11197009	11197010	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584286	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr3.109112107.-	chr3	109112107	109112108	-	0	NA	Intergenic	AluY|SINE|Alu	16730	NM_001145553	401082	Hs.477089	NM_001145553		FLJ25363	-	uncharacterized LOC401082	protein-coding
chr22.49245155.-	chr22	49245155	49245156	-	0	NA	Intergenic	Intergenic	17427	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr10.128076260.+	chr10	128076260	128076261	+	0	NA	"intron (NM_003474, intron 1 of 22)"	CpG	867	NM_003474	8038	Hs.594351	NM_003474	ENSG00000148848	ADAM12	MCMP|MCMPMltna|MLTN|MLTNA	ADAM metallopeptidase domain 12	protein-coding
chr5.174162611.-	chr5	174162611	174162612	-	0	NA	Intergenic	CpG	-11036	NM_002449	4488	Hs.89404	NM_002449	ENSG00000120149	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding
chr1.26591546.+	chr1	26591546	26591547	+	0	NA	"intron (NM_022778, intron 7 of 13)"	AluSx1|SINE|Alu	-14667	NM_031286	83442	Hs.109051	NM_031286		SH3BGRL3	SH3BP-1|TIP-B1	SH3 domain binding glutamic acid-rich protein like 3	protein-coding
chr20.20772497.+	chr20	20772497	20772498	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79231	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr7.72432622.-	chr7	72432622	72432623	-	0	NA	Intergenic	AluY|SINE|Alu	7320	NR_033323	260294	Hs.510927	NM_001039487	ENSG00000106133	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	"NOP2/Sun domain family, member 5 pseudogene 2"	pseudo
chr6.105414621.+	chr6	105414621	105414622	+	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	9698	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr16.88387005.-	chr16	88387005	88387006	-	0	NA	Intergenic	L2b|LINE|L2	106874	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr11.3224476.+	chr11	3224476	3224477	+	0	NA	Intergenic	Intergenic	-15086	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr17.7128001.+	chr17	7128001	7128002	+	0	NA	TTS (NM_004422)	TTS (NM_004422)	-1303	NR_029896	442898		NR_029896	ENSG00000199053	MIR324	MIRN324|hsa-mir-324	microRNA 324	miscRNA
chr8.95668733.+	chr8	95668733	95668734	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15369	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr13.19728191.-	chr13	19728191	19728192	-	0	NA	Intergenic	Intergenic	-11069	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr1.149646781.+	chr1	149646781	149646782	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70328	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr15.41613089.+	chr15	41613089	41613090	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11730	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr8.67618047.+	chr8	67618047	67618048	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6606	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr15.78615173.+	chr15	78615173	78615174	+	0	NA	Intergenic	Intergenic	-17493	NM_004378	1381	Hs.346950	NM_004378	ENSG00000166426	CRABP1	CRABP|CRABP-I|CRABPI|RBP5	cellular retinoic acid binding protein 1	protein-coding
chr6.151727629.+	chr6	151727629	151727630	+	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	-14952	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr12.120959441.+	chr12	120959441	120959442	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7523	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr17.47363966.+	chr17	47363966	47363967	+	0	NA	Intergenic	AluSx|SINE|Alu	38361	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr14.98714072.+	chr14	98714072	98714073	+	0	NA	Intergenic	AluYg6|SINE|Alu	-269611	NR_015430	388011	Hs.651477	NR_015430	ENSG00000246223	C14orf64	-	chromosome 14 open reading frame 64	miscRNA
chr12.6862133.-	chr12	6862133	6862134	-	0	NA	promoter-TSS (NM_005439)	promoter-TSS (NM_005439)	51	NM_005439	8079	Hs.524214	NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
chr9.137200961.-	chr9	137200961	137200962	-	0	NA	Intergenic	Intergenic	17355	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr7.79686561.-	chr7	79686561	79686562	-	0	NA	Intergenic	AluY|SINE|Alu	77579	NM_002069	2770	Hs.134587	NM_001256414	ENSG00000127955	GNAI1	Gi	"guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1"	protein-coding
chr11.2213878.+	chr11	2213878	2213879	+	0	NA	Intergenic	Intergenic	19585	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr14.101693711.+	chr14	101693711	101693712	+	0	NA	Intergenic	Intergenic	157463	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr9.139119814.+	chr9	139119814	139119815	+	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	17873	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr9.137588879.+	chr9	137588879	137588880	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55227	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr11.1122350.+	chr11	1122350	1122351	+	0	NA	Intergenic	Intergenic	47475	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr11.8737206.+	chr11	8737206	8737207	+	0	NA	"exon (NM_213618, exon 6 of 20)"	"exon (NM_213618, exon 6 of 20)"	30220	NR_002977	677826	Hs.523463	NR_002977		SNORA45	ACA3-2	"small nucleolar RNA, H/ACA box 45"	snoRNA
chr2.905546.+	chr2	905546	905547	+	0	NA	Intergenic	Intergenic	-41008	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr13.28733743.+	chr13	28733743	28733744	+	0	NA	"intron (NM_175854, intron 1 of 18)"	AluSp|SINE|Alu	-20432	NR_029383	100288730	Hs.123191	NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	miscRNA
chr14.105618908.+	chr14	105618908	105618909	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16253	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr12.118079878.+	chr12	118079878	118079879	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280271	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr19.4065726.-	chr19	4065726	4065727	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1090	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr2.121244125.-	chr2	121244125	121244126	-	0	NA	Intergenic	Intergenic	20200	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr16.83975009.-	chr16	83975009	83975010	-	0	NA	Intergenic	AluJb|SINE|Alu	11818	NM_182981	29948	Hs.128055	NM_182981	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
chr8.139075517.+	chr8	139075517	139075518	+	0	NA	Intergenic	AluSx|SINE|Alu	433548	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	"family with sequence similarity 135, member B"	protein-coding
chr17.75789552.+	chr17	75789552	75789553	+	0	NA	Intergenic	CpG	90617	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	miscRNA
chr13.112726526.+	chr13	112726526	112726527	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4613	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr17.48422561.-	chr17	48422561	48422562	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	832	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr7.72432616.-	chr7	72432616	72432617	-	0	NA	Intergenic	AluY|SINE|Alu	7314	NR_033323	260294	Hs.510927	NM_001039487	ENSG00000106133	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	"NOP2/Sun domain family, member 5 pseudogene 2"	pseudo
chr10.12405366.+	chr10	12405366	12405367	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13783	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr12.75694242.+	chr12	75694242	75694243	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29594	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr10.59351196.-	chr10	59351196	59351197	-	0	NA	Intergenic	AluY|SINE|Alu	286877	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr1.244889252.+	chr1	244889252	244889253	+	0	NA	Intergenic	AluSx|SINE|Alu	72900	NM_016076	51029	Hs.498317	NM_016076	ENSG00000121644	DESI2	C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
chr10.81586882.-	chr10	81586882	81586883	-	0	NA	"non-coding (NR_029407, exon 1 of 1)"	"non-coding (NR_029407, exon 1 of 1)"	-1224	NR_029407	642361	Hs.164298	NR_029407		LOC642361	-	uncharacterized LOC642361	miscRNA
chr15.41613131.-	chr15	41613131	41613132	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11688	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr13.110832792.+	chr13	110832792	110832793	+	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	126704	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chr6.34857480.+	chr6	34857480	34857481	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	442	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr14.21609970.-	chr14	21609970	21609971	-	0	NA	Intergenic	AluY|SINE|Alu	-14214	NM_001004731	390445	Hs.553768	NM_001004731	ENSG00000169327	OR5AU1	OR14-38	"olfactory receptor, family 5, subfamily AU, member 1"	protein-coding
chr4.96097951.+	chr4	96097951	96097952	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85309	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr1.227982941.+	chr1	227982941	227982942	+	0	NA	Intergenic	Intergenic	-20477	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr7.36845281.-	chr7	36845281	36845282	-	0	NA	Intergenic	AluJb|SINE|Alu	81127	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr19.15037585.-	chr19	15037585	15037586	-	0	NA	Intergenic	AluSp|SINE|Alu	14716	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr19.46966418.+	chr19	46966418	46966419	+	0	NA	Intergenic	AluSz|SINE|Alu	8402	NM_018215	55228	Hs.8395	NM_001103149	ENSG00000182013	PNMAL1	-	paraneoplastic Ma antigen family-like 1	protein-coding
chr21.44478130.-	chr21	44478130	44478131	-	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	-17910	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr17.11197398.+	chr17	11197398	11197399	+	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc|SINE|Alu	52658	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr17.73509990.-	chr17	73509990	73509991	-	0	NA	"5' UTR (NM_020753, exon 2 of 20)"	"5' UTR (NM_020753, exon 2 of 20)"	-1674	NM_020753	57513	Hs.274408	NM_001142643	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
chr13.110438773.+	chr13	110438773	110438774	+	0	NA	"5' UTR (NM_003749, exon 1 of 2)"	"5' UTR (NM_003749, exon 1 of 2)"	141	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr2.48079291.+	chr2	48079291	48079292	+	0	NA	"intron (NM_001190274, intron 1 of 22)"	AluSx1|SINE|Alu	36567	NM_025133	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chr7.64803890.+	chr7	64803890	64803891	+	0	NA	Intergenic	L1M1|LINE|L1	-34878	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
chr16.544879.-	chr16	544879	544880	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20029	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr1.180118088.+	chr1	180118088	180118089	+	0	NA	Intergenic	AluY|SINE|Alu	-5880	NM_002826	5768	Hs.518374	NM_001004128	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin Q6 sulfhydryl oxidase 1	protein-coding
chr17.26336771.-	chr17	26336771	26336772	-	0	NA	Intergenic	AluSz|SINE|Alu	32917	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr7.1147412.+	chr7	1147412	1147413	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19689	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr20.35203700.+	chr20	35203700	35203701	+	0	NA	"intron (NM_001199535, intron 1 of 4)"	"intron (NM_001199535, intron 1 of 4)"	743	NM_001199515	60436	Hs.632264	NM_001199513	ENSG00000118707	TGIF2	-	TGFB-induced factor homeobox 2	protein-coding
chr19.34106410.+	chr19	34106410	34106411	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6451	NM_001127895	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr1.226350769.+	chr1	226350769	226350770	+	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	23654	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr4.185655170.+	chr4	185655170	185655171	+	0	NA	"exon (NM_024629, exon 1 of 13)"	"exon (NM_024629, exon 1 of 13)"	116	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr17.75812483.-	chr17	75812483	75812484	-	0	NA	Intergenic	AluYc|SINE|Alu	-67686	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	miscRNA
chr19.5148577.-	chr19	5148577	5148578	-	0	NA	"intron (NM_015015, intron 21 of 22)"	"intron (NM_015015, intron 21 of 22)"	-179453	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr10.70337097.-	chr10	70337097	70337098	-	0	NA	"intron (NM_030625, intron 2 of 11)"	AluSx|SINE|Alu	-16980	NM_030625	80312	Hs.708977	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
chr20.61021244.-	chr20	61021244	61021245	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18615	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr4.989140.+	chr4	989140	989141	+	0	NA	"intron (NM_000203, intron 2 of 13)"	AluJb|SINE|Alu	-1916	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chrX.29933236.+	chrX	29933236	29933237	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300439	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr9.425357.+	chr9	425357	425358	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44937	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr5.178491485.-	chr5	178491485	178491486	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3878	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr2.43254043.+	chr2	43254043	43254044	+	0	NA	Intergenic	Intergenic	199702	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr5.178157716.-	chr5	178157716	178157717	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	13	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr15.31505671.-	chr15	31505671	31505672	-	0	NA	Intergenic	AluSp|SINE|Alu	-17379	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chr19.3552001.+	chr19	3552001	3552002	+	0	NA	"intron (NM_021731, intron 1 of 10)"	L2b|LINE|L2	5570	NM_174983	126321	Hs.656901	NM_001042680	ENSG00000161091	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
chr9.107825442.+	chr9	107825442	107825443	+	0	NA	Intergenic	AluSc|SINE|Alu	-134915	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr9.1141628.+	chr9	1141628	1141629	+	0	NA	Intergenic	AluY|SINE|Alu	91008	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr6.160985691.-	chr6	160985691	160985692	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53535	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr4.163164052.+	chr4	163164052	163164053	+	0	NA	Intergenic	AluY|SINE|Alu	-78866	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr13.31735104.-	chr13	31735104	31735105	-	0	NA	"intron (NM_006644, intron 1 of 17)"	"intron (NM_006644, intron 1 of 17)"	-1013	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr1.59041984.-	chr1	59041984	59041985	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1182	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr21.47838769.+	chr21	47838769	47838770	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40093	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr5.30269951.-	chr5	30269951	30269952	-	0	NA	Intergenic	AluY|SINE|Alu	923811	NM_004932	1004	Hs.171054	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	"cadherin 6, type 2, K-cadherin (fetal kidney)"	protein-coding
chr15.29130781.-	chr15	29130781	29130782	-	0	NA	Intergenic	CpG	36960	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr22.46504395.+	chr22	46504395	46504396	+	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	-4234	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr7.140185559.-	chr7	140185559	140185560	-	0	NA	Intergenic	FLAM_C|SINE|Alu	6190	NM_013446	23608	Hs.490347	NM_001145125	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
chr2.55647010.+	chr2	55647010	55647011	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	47	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr3.174851030.-	chr3	174851030	174851031	-	0	NA	"intron (NM_207015, intron 2 of 13)"	SVA_D|Other|Other	17998	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	miscRNA
chr19.40828064.-	chr19	40828064	40828065	-	0	NA	"exon (NM_001256441, exon 9 of 9)"	"exon (NM_001256441, exon 9 of 9)"	-26252	NR_046202	126526	Hs.631557	NM_178830	ENSG00000160392	C19orf47	-	chromosome 19 open reading frame 47	protein-coding
chr9.123263175.+	chr9	123263175	123263176	+	0	NA	"intron (NR_073558, intron 12 of 37)"	"intron (NR_073558, intron 12 of 37)"	79273	NR_073556	55755	Hs.269560	NM_001011649	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
chr2.237278396.-	chr2	237278396	237278397	-	0	NA	"intron (NR_073043, intron 13 of 19)"	"intron (NR_073043, intron 13 of 19)"	105408	NM_212556	401036	Hs.639909	NM_212556	ENSG00000182177	ASB18	ASB-18	ankyrin repeat and SOCS box containing 18	protein-coding
chr2.106682219.-	chr2	106682219	106682220	-	0	NA	"5' UTR (NM_032411, exon 1 of 4)"	"5' UTR (NM_032411, exon 1 of 4)"	-106	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr17.76521083.+	chr17	76521083	76521084	+	0	NA	"intron (NM_173628, intron 25 of 80)"	"intron (NM_173628, intron 25 of 80)"	40091	NR_102401	100996295	Hs.638630	XM_003846285		LOC100996295	-	uncharacterized LOC100996295	miscRNA
chr18.46969461.+	chr18	46969461	46969462	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17618	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr4.95482022.-	chr4	95482022	95482023	-	0	NA	"intron (NM_001256427, intron 3 of 14)"	AluY|SINE|Alu	-109014	NM_001011515	10611	Hs.732677	NM_001011513	ENSG00000163110	PDLIM5	ENH|ENH1|LIM	PDZ and LIM domain 5	protein-coding
chr18.42338442.-	chr18	42338442	42338443	-	0	NA	"intron (NM_015559, intron 2 of 5)"	AluY|SINE|Alu	-77579	NM_015559	26040	Hs.435458	NM_001130110	ENSG00000152217	SETBP1	SEB	SET binding protein 1	protein-coding
chr19.1067387.-	chr19	1067387	1067388	-	0	NA	"5' UTR (NM_012292, exon 1 of 23)"	"5' UTR (NM_012292, exon 1 of 23)"	-222	NM_012292	23526	Hs.465521	NM_001258328	ENSG00000180448	HMHA1	ARHGAP45|HA-1|HLA-HA1	histocompatibility (minor) HA-1	protein-coding
chr20.62108045.-	chr20	62108045	62108046	-	0	NA	Intergenic	AluSq2|SINE|Alu	4052	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr19.46786018.+	chr19	46786018	46786019	+	0	NA	"intron (NR_046936, intron 3 of 3)"	AluSx1|SINE|Alu	-14285	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	"hypoxia inducible factor 3, alpha subunit"	protein-coding
chr14.77743575.+	chr14	77743575	77743576	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5920	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr19.18416250.-	chr19	18416250	18416251	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17751	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr18.33543853.-	chr18	33543853	33543854	-	0	NA	Intergenic	AluY|SINE|Alu	8735	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr5.36855808.-	chr5	36855808	36855809	-	0	NA	Intergenic	AluSx|SINE|Alu	-20988	NR_046262	646719	Hs.355684	NR_046262		LOC646719	-	uncharacterized LOC646719	miscRNA
chr10.45240294.+	chr10	45240294	45240295	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166470	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr2.91776222.+	chr2	91776222	91776223	+	0	NA	Intergenic	Intergenic	71753	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr1.243150630.-	chr1	243150630	243150631	-	0	NA	Intergenic	AluY|SINE|Alu	-114416	NR_029401	731275	Hs.722350	NR_029401	ENSG00000214837	LOC731275	-	uncharacterized LOC731275	miscRNA
chr2.128532310.+	chr2	128532310	128532311	+	0	NA	"intron (NM_018383, intron 1 of 21)"	AluY|SINE|Alu	36451	NM_001006622	55339	Hs.554831	NM_001006622	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
chr8.14882315.+	chr8	14882315	14882316	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171296	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr1.120270184.-	chr1	120270184	120270185	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15765	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr19.644303.-	chr19	644303	644304	-	0	NA	TTS (NM_020637)	TTS (NM_020637)	-4377	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr9.80898923.-	chr9	80898923	80898924	-	0	NA	Intergenic	LTR12|LTR|ERV1	13136	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chrM.6563.+	chrM	6563	6564	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.121338276.+	chr12	121338276	121338277	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3879	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr15.81282235.-	chr15	81282235	81282236	-	0	NA	promoter-TSS (NM_015154)	promoter-TSS (NM_015154)	30	NM_015154	23184	Hs.732380	NM_015154	ENSG00000117899	MESDC2	BOCA|MESD	mesoderm development candidate 2	protein-coding
chr2.42801271.-	chr2	42801271	42801272	-	0	NA	"intron (NM_020744, intron 2 of 13)"	AluY|SINE|Alu	-5600	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr6.24720956.-	chr6	24720956	24720957	-	0	NA	Intergenic	CpG	1553	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chrM.6541.+	chrM	6541	6542	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr11.71702902.+	chr11	71702902	71702903	+	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	-7056	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr6.5261749.+	chr6	5261749	5261750	+	0	NA	promoter-TSS (NM_001164841)	promoter-TSS (NM_001164841)	165	NM_006567	10667	Hs.484547	NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|dJ520B18.2	"phenylalanyl-tRNA synthetase 2, mitochondrial"	protein-coding
chr4.40571761.-	chr4	40571761	40571762	-	0	NA	"intron (NM_001098634, intron 1 of 6)"	AluSz|SINE|Alu	53771	NM_019027	54502	Hs.518727	NM_001098634	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
chr1.227982963.+	chr1	227982963	227982964	+	0	NA	Intergenic	Intergenic	-20455	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr2.35387162.-	chr2	35387162	35387163	-	0	NA	Intergenic	AluY|SINE|Alu	-1195551	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr7.56888213.+	chr7	56888213	56888214	+	0	NA	Intergenic	Intergenic	61626	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr22.23924847.-	chr22	23924847	23924848	-	0	NA	Intergenic	AluSx1|SINE|Alu	2352	NM_152855	3543	Hs.348935	NM_020070	ENSG00000128322	IGLL1	14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2	immunoglobulin lambda-like polypeptide 1	protein-coding
chrX.21676540.-	chrX	21676540	21676541	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	92	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr2.241622520.-	chr2	241622520	241622521	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	203	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr17.30132499.+	chr17	30132499	30132500	+	0	NA	Intergenic	AluY|SINE|Alu	53827	NM_018405	55352	Hs.462729	NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	"coordinator of PRMT5, differentiation stimulator"	protein-coding
chr5.153990075.+	chr5	153990075	153990076	+	0	NA	Intergenic	CpG	-14443	NR_036094	100422950		NR_036094	ENSG00000264760	MIR3141	-	microRNA 3141	miscRNA
chr10.134299996.+	chr10	134299996	134299997	+	0	NA	Intergenic	Intergenic	41282	NM_173541	170393	Hs.375059	NM_173541		C10orf91	RP11-432J24.4|bA432J24.4	chromosome 10 open reading frame 91	protein-coding
chr8.11312304.+	chr8	11312304	11312305	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11972	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr9.111476126.+	chr9	111476126	111476127	+	0	NA	Intergenic	L1PA7|LINE|L1	142149	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr1.151431158.+	chr1	151431158	151431159	+	0	NA	"intron (NM_145796, intron 1 of 16)"	C-rich|Low_complexity|Low_complexity	783	NM_015100	23126	Hs.489873	NM_001194937	ENSG00000143442	POGZ	SUHW5|ZNF280E|ZNF635|ZNF635m	pogo transposable element with ZNF domain	protein-coding
chr19.50380805.-	chr19	50380805	50380806	-	0	NA	promoter-TSS (NM_001098633)	promoter-TSS (NM_001098633)	-123	NM_001168222	79735	Hs.631587	NM_001168222	ENSG00000104946	TBC1D17	-	"TBC1 domain family, member 17"	protein-coding
chr22.39069138.+	chr22	39069138	39069139	+	0	NA	"intron (NM_001002880, intron 5 of 5)"	"intron (NM_001002880, intron 5 of 5)"	-8816	NM_020243	56993	Hs.595072	NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22 homolog (yeast)	protein-coding
chr19.22949521.-	chr19	22949521	22949522	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	-17452	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr19.16136957.+	chr19	16136957	16136958	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7566	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr8.7877722.+	chr8	7877722	7877723	+	0	NA	Intergenic	Intergenic	-22679	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr2.183903190.-	chr2	183903190	183903191	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-39	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr8.12516935.+	chr8	12516935	12516936	+	0	NA	"non-coding (NR_047662, exon 2 of 9)"	"non-coding (NR_047662, exon 2 of 9)"	6185	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr11.100596572.+	chr11	100596572	100596573	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38165	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr5.172724953.-	chr5	172724953	172724954	-	0	NA	Intergenic	Intergenic	-31553	NM_003714	8614	Hs.233160	NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
chr9.35649756.+	chr9	35649756	35649757	+	0	NA	"3' UTR (NM_014450, exon 5 of 5)"	"3' UTR (NM_014450, exon 5 of 5)"	1191	NM_014450	27240	Hs.88012	NM_014450	ENSG00000137078	SIT1	RP11-331F9.5|SIT|SIT-R	signaling threshold regulating transmembrane adaptor 1	protein-coding
chr11.66265725.+	chr11	66265725	66265726	+	0	NA	"intron (NM_001256670, intron 15 of 16)"	AluY|SINE|Alu	-12394	NM_024649	582	Hs.502915	NM_024649	ENSG00000174483	BBS1	BBS2L2	Bardet-Biedl syndrome 1	protein-coding
chr2.47660749.+	chr2	47660749	47660750	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30543	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr20.30102626.-	chr20	30102626	30102627	-	0	NA	"intron (NM_178580, intron 1 of 12)"	CpG	-385	NM_178582	81502	Hs.373741	NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1|dJ324O17.1	histocompatibility (minor) 13	protein-coding
chr19.693347.+	chr19	693347	693348	+	0	NA	"intron (NM_214710, intron 2 of 4)"	AluJb|SINE|Alu	2114	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chr10.14719533.-	chr10	14719533	14719534	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97363	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr1.149646808.+	chr1	149646808	149646809	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70355	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr12.49035831.+	chr12	49035831	49035832	+	0	NA	Intergenic	SVA_A|Other|Other	12470	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr22.41821316.+	chr22	41821316	41821317	+	0	NA	Intergenic	AluY|SINE|Alu	21711	NM_016272	10766	Hs.743993	NM_016272	ENSG00000183864	TOB2	TOB4|TOBL|TROB2	"transducer of ERBB2, 2"	protein-coding
chr8.140034400.-	chr8	140034400	140034401	-	0	NA	Intergenic	Intergenic	108164	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	"collagen, type XXII, alpha 1"	protein-coding
chr17.7561706.-	chr17	7561706	7561707	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7452	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr20.43342010.+	chr20	43342010	43342011	+	0	NA	Intergenic	AluSx|SINE|Alu	-1875	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr7.821222.+	chr7	821222	821223	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33972	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr7.132214504.+	chr7	132214504	132214505	+	0	NA	"intron (NM_181775, intron 2 of 4)"	AluY|SINE|Alu	46819	NM_020911	91584	Hs.511454	NM_001105543	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
chr9.123743123.+	chr9	123743123	123743124	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51672	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr17.4183926.+	chr17	4183926	4183927	+	0	NA	"intron (NM_003342, intron 5 of 5)"	AluSx4|SINE|Alu	-16652	NM_016376	51479	Hs.696087	NM_001257999	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
chr7.130418530.-	chr7	130418530	130418531	-	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	-358	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr14.23517078.-	chr14	23517078	23517079	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5702	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chrX.153657095.-	chrX	153657095	153657096	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-117	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr2.71562014.+	chr2	71562014	71562015	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3129	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr5.114712354.+	chr5	114712354	114712355	+	0	NA	Intergenic	MIRb|SINE|MIR	-79896	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr10.7626429.+	chr10	7626429	7626430	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35207	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chrX.125299936.-	chrX	125299936	125299937	-	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	-144	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr17.2843642.+	chr17	2843642	2843643	+	0	NA	"intron (NM_015085, intron 3 of 24)"	"intron (NM_015085, intron 3 of 24)"	123259	NM_014566	8386	Hs.553508	NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31	"olfactory receptor, family 1, subfamily D, member 5"	protein-coding
chr5.178491486.+	chr5	178491486	178491487	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	3879	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr13.46961340.+	chr13	46961340	46961341	+	0	NA	"5' UTR (NM_025113, exon 1 of 15)"	"5' UTR (NM_025113, exon 1 of 15)"	295	NM_025113	80183	Hs.98117	NM_025113	ENSG00000102445	KIAA0226L	C13orf18	KIAA0226-like	protein-coding
chr6.108280015.+	chr6	108280015	108280016	+	0	NA	promoter-TSS (NM_007214)	promoter-TSS (NM_007214)	-533	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr7.1156322.+	chr7	1156322	1156323	+	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	21571	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chr10.132873723.+	chr10	132873723	132873724	+	0	NA	Intergenic	CpG	-112792	NR_036180	100422867		NR_036180	ENSG00000264803	MIR378C	-	microRNA 378c	miscRNA
chr2.178129401.-	chr2	178129401	178129402	-	0	NA	promoter-TSS (NM_001145412)	promoter-TSS (NM_001145412)	-458	NM_006164	4780	Hs.744006	NM_001145412	ENSG00000116044	NFE2L2	NRF2	nuclear factor (erythroid-derived 2)-like 2	protein-coding
chr8.21169242.-	chr8	21169242	21169243	-	0	NA	Intergenic	Intergenic	-337745	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr5.36877466.-	chr5	36877466	36877467	-	0	NA	promoter-TSS (NR_046262)	promoter-TSS (NR_046262)	-605	NM_133433	25836	Hs.481927	NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	Nipped-B homolog (Drosophila)	protein-coding
chr4.77348129.-	chr4	77348129	77348130	-	0	NA	Intergenic	AluY|SINE|Alu	8124	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr9.137721705.-	chr9	137721705	137721706	-	0	NA	"intron (NM_000093, intron 63 of 65)"	"intron (NM_000093, intron 63 of 65)"	-19510	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr14.100647478.+	chr14	100647478	100647479	+	0	NA	Intergenic	SVA_D|Other|Other	-21466	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	"delta(4)-desaturase, sphingolipid 2"	protein-coding
chr19.7929657.+	chr19	7929657	7929658	+	0	NA	"3' UTR (NM_001159944, exon 19 of 19)"	"3' UTR (NM_001159944, exon 19 of 19)"	9669	NM_001190467	80164	Hs.288540	NM_001190467	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
chr7.128141919.-	chr7	128141919	128141920	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25136	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr16.25269576.+	chr16	25269576	25269577	+	0	NA	promoter-TSS (NM_001012981)	promoter-TSS (NM_001012981)	-721	NM_001012981	342357	Hs.513451	NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
chr8.117309715.+	chr8	117309715	117309716	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27582	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr4.166248520.+	chr4	166248520	166248521	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-298	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr19.18416244.-	chr19	18416244	18416245	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17757	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr5.72904309.+	chr5	72904309	72904310	+	0	NA	Intergenic	AluSp|SINE|Alu	-17674	NM_001177693	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
chr4.163164055.-	chr4	163164055	163164056	-	0	NA	Intergenic	AluY|SINE|Alu	78869	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chrX.89718081.-	chrX	89718081	89718082	-	0	NA	Intergenic	AluY|SINE|Alu	-541141	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	"TGFB-induced factor homeobox 2-like, X-linked"	protein-coding
chrX.21676555.-	chrX	21676555	21676556	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	107	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chrX.141491525.+	chrX	141491525	141491526	+	0	NA	Intergenic	AluY|SINE|Alu	-198449	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr1.168064886.+	chr1	168064886	168064887	+	0	NA	"intron (NM_001267609, intron 4 of 6)"	"intron (NM_001267609, intron 4 of 6)"	40788	NM_001267612	23432	Hs.271809	NM_007369		GPR161	RE2	G protein-coupled receptor 161	protein-coding
chr18.63211114.+	chr18	63211114	63211115	+	0	NA	Intergenic	AluY|SINE|Alu	-206374	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr13.115000264.-	chr13	115000264	115000265	-	0	NA	promoter-TSS (NM_001078645)	promoter-TSS (NM_001078645)	98	NM_003903	8881	Hs.374127	NM_001078645	ENSG00000130177	CDC16	ANAPC6|APC6|CUT9	cell division cycle 16	protein-coding
chrM.2591.-	chrM	2591	2592	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.70156399.-	chr12	70156399	70156400	-	0	NA	"intron (NM_022456, intron 3 of 10)"	AluY|SINE|Alu	16355	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
chr17.8788142.-	chr17	8788142	8788143	-	0	NA	"intron (NM_001251851, intron 14 of 18)"	"intron (NM_001251851, intron 14 of 18)"	17148	NM_001010855	146850	Hs.255809	NM_001010855		PIK3R6	C17orf38|HsT41028|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	"phosphoinositide-3-kinase, regulatory subunit 6"	protein-coding
chr5.1137819.-	chr5	1137819	1137820	-	0	NA	Intergenic	Intergenic	25647	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr12.133141211.-	chr12	133141211	133141212	-	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	-45826	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr10.42385228.+	chr10	42385228	42385229	+	0	NA	Intergenic	HSATII|Satellite|Satellite	478265	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr17.70877076.+	chr17	70877076	70877077	+	0	NA	"intron (NM_139177, intron 5 of 9)"	AluY|SINE|Alu	211777	NM_139177	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr8.104427099.-	chr8	104427099	104427100	-	0	NA	"non-coding (NR_102337, exon 1 of 6)"	"non-coding (NR_102337, exon 1 of 6)"	-157	NM_015420	25879	Hs.532265	NM_015420	ENSG00000164934	DCAF13	GM83|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
chr3.142839320.-	chr3	142839320	142839321	-	0	NA	"5' UTR (NM_004267, exon 1 of 2)"	"5' UTR (NM_004267, exon 1 of 2)"	-702	NM_004267	9435	Hs.744216	NM_004267		CHST2	C6ST|GST-2|GST2|Gn6ST-1|glcNAc6ST-1	carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2	protein-coding
chr12.123489931.-	chr12	123489931	123489932	-	0	NA	"exon (NM_020845, exon 6 of 25)"	"exon (NM_020845, exon 6 of 25)"	-5344	NR_036187	100422931		NR_036187		MIR4304	-	microRNA 4304	miscRNA
chr2.136552113.+	chr2	136552113	136552114	+	0	NA	"intron (NM_002299, intron 14 of 16)"	"intron (NM_002299, intron 14 of 16)"	-25648	NR_045486	100507600	Hs.662020	NR_045486	ENSG00000226806	LOC100507600	-	uncharacterized LOC100507600	miscRNA
chr16.81491356.+	chr16	81491356	81491357	+	0	NA	"intron (NM_198390, intron 1 of 20)"	"intron (NM_198390, intron 1 of 20)"	12581	NM_198390	80790	Hs.721240	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
chr16.89883338.+	chr16	89883338	89883339	+	0	NA	promoter-TSS (NM_000135)	promoter-TSS (NM_000135)	-273	NM_000135	2175	Hs.744083	NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	"Fanconi anemia, complementation group A"	protein-coding
chr22.34378789.-	chr22	34378789	34378790	-	0	NA	Intergenic	AluSx1|SINE|Alu	62373	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr12.132372567.+	chr12	132372567	132372568	+	0	NA	Intergenic	AluSx|SINE|Alu	-6712	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr15.74907263.-	chr15	74907263	74907264	-	0	NA	promoter-TSS (NM_001130028)	promoter-TSS (NM_001130028)	72	NM_001130028	1198	Hs.584748	NM_001130028	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC-like kinase 3	protein-coding
chr6.34770168.-	chr6	34770168	34770169	-	0	NA	"intron (NM_017754, intron 1 of 20)"	AluSx1|SINE|Alu	-10374	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr14.102983848.-	chr14	102983848	102983849	-	0	NA	Intergenic	CpG	7720	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr3.11196323.+	chr3	11196323	11196324	+	0	NA	"intron (NM_001098212, intron 1 of 1)"	CpG	109	NM_001098212	3269	Hs.1570	NM_000861	ENSG00000196639	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
chr7.91516802.+	chr7	91516802	91516803	+	0	NA	Intergenic	SVA_A|Other|Other	-6786	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr12.69004648.+	chr12	69004648	69004649	+	0	NA	promoter-TSS (NM_001251922)	promoter-TSS (NM_001251922)	29	NM_001010942	5908	Hs.369920	NM_001010942	ENSG00000127314	RAP1B	K-REV|RAL1B	"RAP1B, member of RAS oncogene family"	protein-coding
chr12.56579392.-	chr12	56579392	56579393	-	0	NA	"intron (NM_003075, intron 3 of 27)"	AluSx1|SINE|Alu	-3959	NM_139067	6601	Hs.632717	NM_001130420		SMARCC2	BAF170|CRACC2|Rsc8	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2"	protein-coding
chr16.84754617.+	chr16	84754617	84754618	+	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	21062	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr2.100511088.+	chr2	100511088	100511089	+	0	NA	"intron (NM_002285, intron 6 of 23)"	AluY|SINE|Alu	210957	NM_001025108	3899	Hs.444414	NM_001025108	ENSG00000144218	AFF3	LAF4|MLLT2-like	"AF4/FMR2 family, member 3"	protein-coding
chr22.49447912.-	chr22	49447912	49447913	-	0	NA	Intergenic	CpG	-185330	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr8.1321517.+	chr8	1321517	1321518	+	0	NA	Intergenic	CpG	-70690	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr22.18477404.-	chr22	18477404	18477405	-	0	NA	"intron (NM_001136004, intron 1 of 22)"	AluJb|SINE|Alu	13677	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	miscRNA
chr22.21983012.+	chr22	21983012	21983013	+	0	NA	"exon (NM_001017964, exon 5 of 5)"	"exon (NM_001017964, exon 5 of 5)"	1328	NM_001017964	150223	Hs.355952	NM_001017965	ENSG00000161179	YDJC	-	YdjC homolog (bacterial)	protein-coding
chr7.122313294.-	chr7	122313294	122313295	-	0	NA	"intron (NM_001009571, intron 2 of 27)"	LTR12C|LTR|ERV1	-25914	NM_139175	168433	Hs.126730	NM_139175	ENSG00000188050	RNF133	-	ring finger protein 133	protein-coding
chr11.189869.+	chr11	189869	189870	+	0	NA	Intergenic	TAR1|Satellite|telo	-3211	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	"secretoglobin, family 1C, member 1-like"	protein-coding
chr10.135192255.+	chr10	135192255	135192256	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-486	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr16.89034175.+	chr16	89034175	89034176	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9329	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chrX.47334404.+	chrX	47334404	47334405	+	0	NA	"intron (NM_153380, intron 1 of 4)"	AluYk12|SINE|Alu	7941	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr5.32689654.-	chr5	32689654	32689655	-	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	21089	NM_001204376	4883	Hs.619466	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
chr12.56394856.-	chr12	56394856	56394857	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3813	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr7.56109472.-	chr7	56109472	56109473	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9796	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr14.71391913.+	chr14	71391913	71391914	+	0	NA	"intron (NM_014982, intron 1 of 35)"	AluSz6|SINE|Alu	17791	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr17.45950053.-	chr17	45950053	45950054	-	0	NA	Intergenic	Intergenic	16813	NM_199262	80320	Hs.253603	NM_001258248	ENSG00000189120	SP6	EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
chr1.6132094.+	chr1	6132094	6132095	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25920	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr12.131191638.-	chr12	131191638	131191639	-	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	-132181	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr2.136760853.-	chr2	136760853	136760854	-	0	NA	Intergenic	AluSq2|SINE|Alu	17631	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr17.2311359.+	chr17	2311359	2311360	+	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	-7101	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr7.2777111.+	chr7	2777111	2777112	+	0	NA	"intron (NM_007353, intron 2 of 3)"	AluSx|SINE|Alu	57948	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr20.60985996.-	chr20	60985996	60985997	-	0	NA	"exon (NM_080833, exon 14 of 14)"	"exon (NM_080833, exon 14 of 14)"	3657	NM_031215	81928	Hs.301040	XM_003960792	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
chr9.138065612.+	chr9	138065612	138065613	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7843	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr8.123899476.-	chr8	123899476	123899477	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105575	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr3.95669673.+	chr3	95669673	95669674	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267636	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr1.62231196.-	chr1	62231196	62231197	-	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	-23047	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr3.29051416.+	chr3	29051416	29051417	+	0	NA	Intergenic	AluSc8|SINE|Alu	-271387	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr12.107112640.+	chr12	107112640	107112641	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34162	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr1.32679399.-	chr1	32679399	32679400	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4704	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr2.101924989.+	chr2	101924989	101924990	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	189	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr13.33774986.+	chr13	33774986	33774987	+	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	5201	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr7.157486487.-	chr7	157486487	157486488	-	0	NA	"intron (NM_130842, intron 11 of 21)"	CpG	119373	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr10.6985598.-	chr10	6985598	6985599	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164038	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr17.74894607.+	chr17	74894607	74894608	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25878	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr9.130292641.+	chr9	130292641	130292642	+	0	NA	"intron (NM_022833, intron 2 of 13)"	"intron (NM_022833, intron 2 of 13)"	38714	NM_022833	64855	Hs.522401	NM_001035534	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	"family with sequence similarity 129, member B"	protein-coding
chr16.3203782.+	chr16	3203782	3203783	+	0	NA	Intergenic	AluSg|SINE|Alu	18648	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr17.78559361.-	chr17	78559361	78559362	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40736	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr12.109745228.-	chr12	109745228	109745229	-	0	NA	"intron (NM_213596, intron 2 of 9)"	"intron (NM_213596, intron 2 of 9)"	-1797	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
chr19.11072128.-	chr19	11072128	11072129	-	0	NA	"intron (NM_001128849, intron 1 of 35)"	CpG	-320	NM_001128849	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr17.27074384.-	chr17	27074384	27074385	-	0	NA	"intron (NM_004295, intron 2 of 6)"	"intron (NM_004295, intron 2 of 6)"	-3361	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr20.52741112.-	chr20	52741112	52741113	-	0	NA	Intergenic	AluSx1|SINE|Alu	-49404	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr17.73896020.-	chr17	73896020	73896021	-	0	NA	"intron (NM_032478, intron 6 of 8)"	"intron (NM_032478, intron 6 of 8)"	2936	NM_001256124	201292	Hs.189823	NM_001256124	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
chr2.61701812.+	chr2	61701812	61701813	+	0	NA	Intergenic	AluSg|SINE|Alu	-3963	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr19.52640505.+	chr19	52640505	52640506	+	0	NA	"intron (NM_178523, intron 1 of 3)"	AluY|SINE|Alu	2686	NM_178523	90317	Hs.731969	NM_178523		ZNF616	-	zinc finger protein 616	protein-coding
chr8.67618042.-	chr8	67618042	67618043	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6611	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr22.38510733.-	chr22	38510733	38510734	-	0	NA	"intron (NM_001004426, intron 13 of 15)"	"intron (NM_001004426, intron 13 of 15)"	4057	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr2.239058215.+	chr2	239058215	239058216	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10852	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr16.30429310.+	chr16	30429310	30429311	+	0	NA	"exon (NM_001142305, exon 3 of 3)"	"exon (NM_001142305, exon 3 of 3)"	10575	NM_016643	51333	Hs.148584	NM_001142305	ENSG00000179965	ZNF771	DSC43	zinc finger protein 771	protein-coding
chr18.63211104.-	chr18	63211104	63211105	-	0	NA	Intergenic	AluY|SINE|Alu	206384	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr3.102973890.+	chr3	102973890	102973891	+	0	NA	Intergenic	SVA_D|Other|Other	820031	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr12.116724257.+	chr12	116724257	116724258	+	0	NA	Intergenic	AluY|SINE|Alu	-9266	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr3.128362564.-	chr3	128362564	128362565	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7155	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr12.8777854.-	chr12	8777854	8777855	-	0	NA	Intergenic	Intergenic	12412	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr13.35001413.-	chr13	35001413	35001414	-	0	NA	Intergenic	AluSq2|SINE|Alu	-213409	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr18.48115834.-	chr18	48115834	48115835	-	0	NA	"intron (NM_002747, intron 1 of 5)"	AluY|SINE|Alu	-29350	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr7.55379487.+	chr7	55379487	55379488	+	0	NA	Intergenic	SVA_D|Other|Other	-53654	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr1.36675718.+	chr1	36675718	36675719	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14299	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
chr14.54423534.-	chr14	54423534	54423535	-	0	NA	promoter-TSS (NM_001202)	promoter-TSS (NM_001202)	-20	NM_130850	652	Hs.68879	NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
chr18.35147264.+	chr18	35147264	35147265	+	0	NA	Intergenic	CpG-11742	-1264	NM_020180	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr10.46833264.-	chr10	46833264	46833265	-	0	NA	Intergenic	AluY|SINE|Alu	64377	NR_027632	414241	Hs.594331	NR_027632	ENSG00000165874	FAM35BP	FAM35B|bA38L15.1	"family with sequence similarity 35, member A pseudogene"	pseudo
chr20.43342086.+	chr20	43342086	43342087	+	0	NA	Intergenic	AluSx|SINE|Alu	-1799	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr1.153961812.+	chr1	153961812	153961813	+	0	NA	Intergenic	AluY|SINE|Alu	-1427	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chrX.137770398.-	chrX	137770398	137770399	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20444	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr8.99416770.-	chr8	99416770	99416771	-	0	NA	Intergenic	AluYk4|SINE|Alu	22480	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr20.62479283.-	chr20	62479283	62479284	-	0	NA	Intergenic	Intergenic	13283	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr12.133147785.-	chr12	133147785	133147786	-	0	NA	"intron (NM_001142641, intron 8 of 16)"	CpG-6154	-39252	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr4.2878526.-	chr4	2878526	2878527	-	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	-32942	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr12.2734330.+	chr12	2734330	2734331	+	0	NA	"intron (NM_001129846, intron 29 of 45)"	"intron (NM_001129846, intron 29 of 45)"	65993	NR_045725	100652846	Hs.683896	NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	miscRNA
chr9.38829819.+	chr9	38829819	38829820	+	0	NA	Intergenic	AluY|SINE|Alu	208734	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr14.71787510.-	chr14	71787510	71787511	-	0	NA	Intergenic	CpG	77544	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	"small nucleolar RNA, C/D box 56B"	snoRNA
chr2.224724784.-	chr2	224724784	224724785	-	0	NA	Intergenic	AluSp|SINE|Alu	22465	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr17.76488503.-	chr17	76488503	76488504	-	0	NA	"intron (NM_173628, intron 42 of 80)"	"intron (NM_173628, intron 42 of 80)"	-7511	NR_102401	100996295	Hs.638630	XM_003846285		LOC100996295	-	uncharacterized LOC100996295	miscRNA
chrX.81762795.-	chrX	81762795	81762796	-	0	NA	Intergenic	AluY|SINE|Alu	1000474	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr18.2377778.+	chr18	2377778	2377779	+	0	NA	Intergenic	AluSg7|SINE|Alu	193711	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr4.89080207.-	chr4	89080207	89080208	-	0	NA	promoter-TSS (NM_004827)	promoter-TSS (NM_004827)	196	NM_004827	9429	Hs.480218	NM_001257386	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR1|UAQTL1	"ATP-binding cassette, sub-family G (WHITE), member 2"	protein-coding
chr6.151727653.+	chr6	151727653	151727654	+	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	-14976	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr1.227498650.-	chr1	227498650	227498651	-	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	-7176	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chr20.60392345.+	chr20	60392345	60392346	+	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	136373	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr3.22099268.-	chr3	22099268	22099269	-	0	NA	Intergenic	AluSx|SINE|Alu	306452	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr8.128328722.-	chr8	128328722	128328723	-	0	NA	Intergenic	Intergenic	99135	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr8.56758302.-	chr8	56758302	56758303	-	0	NA	Intergenic	AluSx3|SINE|Alu	34084	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr17.43255861.-	chr17	43255861	43255862	-	0	NA	Intergenic	AluY|SINE|Alu	-17597	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr10.43951298.+	chr10	43951298	43951299	+	0	NA	"intron (NR_026693, intron 1 of 3)"	CpG	18724	NR_026693	642819	Hs.719657	NR_026693		ZNF487P	KRBO1|ZNF487	"zinc finger protein 487, pseudogene"	pseudo
chr9.95409005.-	chr9	95409005	95409006	-	0	NA	"intron (NM_022755, intron 6 of 12)"	AluY|SINE|Alu	-23542	NM_022755	64768	Hs.713775	NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	"inositol 1,3,4,5,6-pentakisphosphate 2-kinase"	protein-coding
chr2.128965845.+	chr2	128965845	128965846	+	0	NA	Intergenic	SVA_F|Other|Other	110326	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr14.94606703.+	chr14	94606703	94606704	+	0	NA	Intergenic	Intergenic	-10746	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chrX.54371324.+	chrX	54371324	54371325	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13114	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr6.158438952.-	chr6	158438952	158438953	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-872	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr7.124427322.-	chr7	124427322	124427323	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3542	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr8.56758265.+	chr8	56758265	56758266	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34121	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chrX.29584314.-	chrX	29584314	29584315	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649361	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr19.2492364.+	chr19	2492364	2492365	+	0	NA	Intergenic	AluSz|SINE|Alu	16241	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr8.143356698.+	chr8	143356698	143356699	+	0	NA	"intron (NM_145003, intron 11 of 13)"	"intron (NM_145003, intron 11 of 13)"	76981	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr1.3461451.+	chr1	3461451	3461452	+	0	NA	"intron (NM_001409, intron 4 of 36)"	"intron (NM_001409, intron 4 of 36)"	15903	NR_030277	693135		NR_030277		MIR551A	MIRN551A	microRNA 551a	miscRNA
chr19.267161.+	chr19	267161	267162	+	0	NA	Intergenic	CpG	24008	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr7.936476.-	chr7	936476	936477	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20285	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr6.168395048.+	chr6	168395048	168395049	+	0	NA	Intergenic	AluSx|SINE|Alu	-17429	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr8.27127629.+	chr8	27127629	27127630	+	0	NA	Intergenic	AluY|SINE|Alu	-11726	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr1.2157806.-	chr1	2157806	2157807	-	0	NA	Intergenic	AluJb|SINE|Alu	2328	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr9.21968310.+	chr9	21968310	21968311	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1172	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr9.127099232.+	chr9	127099232	127099233	+	0	NA	"intron (NM_001166170, intron 7 of 9)"	AluSx|SINE|Alu	-16520	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	miscRNA
chr4.72877026.-	chr4	72877026	72877027	-	0	NA	Intergenic	AluY|SINE|Alu	20495	NM_004885	10886	Hs.99231	NM_001144756	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
chr14.23517059.-	chr14	23517059	23517060	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5683	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chrX.109043293.-	chrX	109043293	109043294	-	0	NA	Intergenic	AluY|SINE|Alu	66672	NM_004458	2182	Hs.268785	NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
chr4.55456278.+	chr4	55456278	55456279	+	0	NA	Intergenic	AluSx|SINE|Alu	-67817	NM_000222	3815	Hs.479754	NM_000222	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
chr22.20137592.+	chr22	20137592	20137593	+	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	-161	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr18.19632308.+	chr18	19632308	19632309	+	0	NA	Intergenic	AluSg4|SINE|Alu	-117096	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr15.37172815.+	chr15	37172815	37172816	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5919	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chrX.91037251.+	chrX	91037251	91037252	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2991	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr6.159416786.-	chr6	159416786	159416787	-	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	-4412	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr5.89746461.-	chr5	89746461	89746462	-	0	NA	Intergenic	AluSz|SINE|Alu	-24124	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr14.71082673.-	chr14	71082673	71082674	-	0	NA	Intergenic	AluSg7|SINE|Alu	15289	NM_005466	10001	Hs.497353	NM_005466	ENSG00000133997	MED6	NY-REN-28	mediator complex subunit 6	protein-coding
chr5.693997.+	chr5	693997	693998	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-487	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr22.45845293.+	chr22	45845293	45845294	+	0	NA	Intergenic	AluSz6|SINE|Alu	35721	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11	RIB43A domain with coiled-coils 2	protein-coding
chr1.31248104.+	chr1	31248104	31248105	+	0	NA	Intergenic	Intergenic	-17421	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr6.88090577.+	chr6	88090577	88090578	+	0	NA	Intergenic	AluJb|SINE|Alu	-16265	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr20.39037379.-	chr20	39037379	39037380	-	0	NA	Intergenic	AluYk4|SINE|Alu	-280497	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)	protein-coding
chr19.16683047.+	chr19	16683047	16683048	+	0	NA	"exon (NM_024881, exon 1 of 6)"	"exon (NM_024881, exon 1 of 6)"	146	NM_024881	79939	Hs.620596	NM_024881	ENSG00000127526	SLC35E1	-	"solute carrier family 35, member E1"	protein-coding
chr7.5610923.-	chr7	5610923	5610924	-	0	NA	Intergenic	AluSx1|SINE|Alu	21513	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr22.49181542.-	chr22	49181542	49181543	-	0	NA	Intergenic	AluSx1|SINE|Alu	-5435	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	miscRNA
chr8.14882334.-	chr8	14882334	14882335	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171315	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr9.861777.+	chr9	861777	861778	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20087	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr19.11104344.+	chr19	11104344	11104345	+	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	9516	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr17.18575648.+	chr17	18575648	18575649	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	846	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr1.982968.+	chr1	982968	982969	+	0	NA	"exon (NM_198576, exon 21 of 36)"	"exon (NM_198576, exon 21 of 36)"	26719	NM_001205252	401934	Hs.568137	NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
chr3.9398178.-	chr3	9398178	9398179	-	0	NA	Intergenic	AluY|SINE|Alu	6539	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr5.133831550.+	chr5	133831550	133831551	+	0	NA	Intergenic	AluY|SINE|Alu	-30248	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr17.6899462.-	chr17	6899462	6899463	-	0	NA	promoter-TSS (NM_000697)	promoter-TSS (NM_000697)	-78	NM_000697	239	Hs.654431	NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase	protein-coding
chr22.21635810.-	chr22	21635810	21635811	-	0	NA	promoter-TSS (NR_024583)	promoter-TSS (NR_024583)	904	NR_024583	29797	Hs.735161	NR_024583		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin-like 8 pseudogene	pseudo
chr7.1286175.-	chr7	1286175	1286176	-	0	NA	Intergenic	CpG	-13521	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr18.12390630.-	chr18	12390630	12390631	-	0	NA	Intergenic	AluSx1|SINE|Alu	13355	NM_006796	10939	Hs.726355	NM_006796	ENSG00000141385	AFG3L2	SCA28|SPAX5	AFG3 ATPase family member 3-like 2 (S. cerevisiae)	protein-coding
chr2.47661303.-	chr2	47661303	47661304	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31097	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr3.9459287.-	chr3	9459287	9459288	-	0	NA	"intron (NM_001080517, intron 1 of 22)"	AluY|SINE|Alu	-19884	NM_001080517	55209	Hs.288164	NM_001080517	ENSG00000168137	SETD5	-	SET domain containing 5	protein-coding
chr13.112726552.+	chr13	112726552	112726553	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4639	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr7.150093825.-	chr7	150093825	150093826	-	0	NA	"exon (NM_173680, exon 3 of 3)"	"exon (NM_173680, exon 3 of 3)"	9015	NR_027237	728743	Hs.650365	NR_027237		LOC728743	-	zinc finger protein pseudogene	pseudo
chr6.4780644.+	chr6	4780644	4780645	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3964	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr1.1066028.+	chr1	1066028	1066029	+	0	NA	Intergenic	HAL1|LINE|L1	-6369	NR_038869	254099	Hs.680488	NR_038869	ENSG00000223823	LOC254099	-	uncharacterized LOC254099	miscRNA
chr2.46926120.-	chr2	46926120	46926121	-	0	NA	promoter-TSS (NM_144949)	promoter-TSS (NM_144949)	-21	NM_014011	9655	Hs.468426	NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
chr11.75294623.+	chr11	75294623	75294624	+	0	NA	Intergenic	CpG	21522	NM_001235	871	Hs.596449	NM_001207014	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46	"serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)"	protein-coding
chr12.132116824.-	chr12	132116824	132116825	-	0	NA	Intergenic	L1ME1|LINE|L1	78808	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr2.10130553.+	chr2	10130553	10130554	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSx1|SINE|Alu	38761	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr17.74894614.+	chr17	74894614	74894615	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25885	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr4.11541362.-	chr4	11541362	11541363	-	0	NA	Intergenic	AluSz|SINE|Alu	110825	NM_005114	9957	Hs.605349	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chr10.135192344.-	chr10	135192344	135192345	-	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	397	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr4.26862483.+	chr4	26862483	26862484	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	170	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr7.1286169.+	chr7	1286169	1286170	+	0	NA	Intergenic	CpG	13515	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr9.133430122.+	chr9	133430122	133430123	+	0	NA	Intergenic	Intergenic	24759	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr2.213546619.+	chr2	213546619	213546620	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143267	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr7.2598942.-	chr7	2598942	2598943	-	0	NA	"intron (NM_001100390, intron 1 of 20)"	CpG	-310	NM_001100390	23288	Hs.520627	NM_001100390	ENSG00000106012	IQCE	1700028P05Rik	IQ motif containing E	protein-coding
chr4.54103744.-	chr4	54103744	54103745	-	0	NA	"intron (NM_152540, intron 4 of 8)"	SVA_D|Other|Other	-128498	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr2.241363385.+	chr2	241363385	241363386	+	0	NA	Intergenic	Intergenic	-11730	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr11.507423.+	chr11	507423	507424	+	0	NA	promoter-TSS (NM_002939)	promoter-TSS (NM_002939)	-140	NM_203387	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
chr17.4453800.-	chr17	4453800	4453801	-	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	-4881	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr2.48010438.+	chr2	48010438	48010439	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	217	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr1.110881115.-	chr1	110881115	110881116	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-678	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr9.138690085.+	chr9	138690085	138690086	+	0	NA	Intergenic	Intergenic	96054	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr2.239058247.+	chr2	239058247	239058248	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10884	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr12.132116773.+	chr12	132116773	132116774	+	0	NA	Intergenic	L1ME1|LINE|L1	-78859	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr8.56758473.-	chr8	56758473	56758474	-	0	NA	Intergenic	AluSx|SINE|Alu	33913	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr3.48117737.+	chr3	48117737	48117738	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13032	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr9.139071827.+	chr9	139071827	139071828	+	0	NA	Intergenic	Intergenic	23177	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr12.75694208.+	chr12	75694208	75694209	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29628	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr16.84670324.+	chr16	84670324	84670325	+	0	NA	Intergenic	AluY|SINE|Alu	-11807	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr2.230579323.-	chr2	230579323	230579324	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	37	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr2.186081477.-	chr2	186081477	186081478	-	0	NA	Intergenic	AluY|SINE|Alu	521878	NM_173651	401024	Hs.98025	NM_207482	ENSG00000188738	FSIP2	-	fibrous sheath interacting protein 2	protein-coding
chr5.34008268.+	chr5	34008268	34008269	+	0	NA	promoter-TSS (NM_203382)	promoter-TSS (NM_203382)	-48	NM_203382	23600	Hs.508343	NM_001167595	ENSG00000242110	AMACR	AMACRD|CBAS4|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
chr17.79981506.+	chr17	79981506	79981507	+	0	NA	promoter-TSS (NM_144998)	promoter-TSS (NM_144998)	226	NM_144999	201255	Hs.143774	NM_144999	ENSG00000169683	LRRC45	-	leucine rich repeat containing 45	protein-coding
chrX.39680219.-	chrX	39680219	39680220	-	0	NA	Intergenic	CpG	-276500	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chrX.99617517.-	chrX	99617517	99617518	-	0	NA	"intron (NM_020766, intron 2 of 4)"	AluY|SINE|Alu	-47754	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr12.66768089.+	chr12	66768089	66768090	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71754	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr17.79611140.-	chr17	79611140	79611141	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1791	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr7.4516797.+	chr7	4516797	4516798	+	0	NA	Intergenic	AluSx1|SINE|Alu	-205133	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr5.68358815.-	chr5	68358815	68358816	-	0	NA	Intergenic	SVA_D|Other|Other	30961	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr10.59351216.+	chr10	59351216	59351217	+	0	NA	Intergenic	AluY|SINE|Alu	-286897	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr11.7603257.-	chr11	7603257	7603258	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15160	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr2.204121202.+	chr2	204121202	204121203	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18038	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr11.16894156.-	chr11	16894156	16894157	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-134008	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr19.2340027.-	chr19	2340027	2340028	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11398	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr3.164852023.-	chr3	164852023	164852024	-	0	NA	Intergenic	AluY|SINE|Alu	55740	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr1.101005236.+	chr1	101005236	101005237	+	0	NA	"exon (NM_022049, exon 2 of 2)"	"exon (NM_022049, exon 2 of 2)"	1508	NM_022049	54112	Hs.170053	NM_022049	ENSG00000181656	GPR88	STRG	G protein-coupled receptor 88	protein-coding
chr1.110162548.+	chr1	110162548	110162549	+	0	NA	promoter-TSS (NM_004037)	promoter-TSS (NM_004037)	113	NM_139156	271	Hs.82927	NM_001257360	ENSG00000116337	AMPD2	-	adenosine monophosphate deaminase 2	protein-coding
chr8.19626765.+	chr8	19626765	19626766	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48153	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr1.8021813.-	chr1	8021813	8021814	-	0	NA	promoter-TSS (NM_007262)	promoter-TSS (NM_007262)	-99	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr7.1001897.-	chr7	1001897	1001898	-	0	NA	Intergenic	Intergenic	7608	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr5.27408040.+	chr5	27408040	27408041	+	0	NA	Intergenic	AluY|SINE|Alu	-64359	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr9.121872024.-	chr9	121872024	121872025	-	0	NA	Intergenic	AluYk4|SINE|Alu	-259715	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr6.15189319.-	chr6	15189319	15189320	-	0	NA	Intergenic	SVA_F|Other|Other	56887	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr2.202092473.+	chr2	202092473	202092474	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5693	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr11.71702913.-	chr11	71702913	71702914	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7045	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr10.735631.-	chr10	735631	735632	-	0	NA	promoter-TSS (NM_014974)	promoter-TSS (NM_014974)	23	NM_014974	22982	Hs.432397	NM_014974	ENSG00000151240	DIP2C	KIAA0934	DIP2 disco-interacting protein 2 homolog C (Drosophila)	protein-coding
chr3.114903239.+	chr3	114903239	114903240	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37112	NM_015642	26137	Hs.655108	NM_001164342	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
chrX.18849754.+	chrX	18849754	18849755	+	0	NA	Intergenic	AluY|SINE|Alu	-58660	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr20.55965389.+	chr20	55965389	55965390	+	0	NA	"intron (NR_039970, intron 1 of 2)"	"intron (NR_039970, intron 1 of 2)"	-1065	NM_017495	55544	Hs.236361	NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
chr6.25384319.+	chr6	25384319	25384320	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104663	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr17.57868981.-	chr17	57868981	57868982	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49646	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr12.129892199.+	chr12	129892199	129892200	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496013	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr14.36549602.-	chr14	36549602	36549603	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9969	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr14.65007389.-	chr14	65007389	65007390	-	0	NA	"5' UTR (NM_021979, exon 1 of 1)"	"5' UTR (NM_021979, exon 1 of 1)"	-203	NM_021979	3306	Hs.432648	NM_021979	ENSG00000126803	HSPA2	HSP70-2|HSP70-3	heat shock 70kDa protein 2	protein-coding
chr14.22016196.-	chr14	22016196	22016197	-	0	NA	Intergenic	AluY|SINE|Alu	10859	NM_005407	6297	Hs.743336	NM_005407	ENSG00000165821	SALL2	HSAL2|Sal-2|ZNF795|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding
chr4.1400177.-	chr4	1400177	1400178	-	0	NA	Intergenic	CpG	-14837	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr20.60624014.+	chr20	60624014	60624015	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16852	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr21.46810501.-	chr21	46810501	46810502	-	0	NA	Intergenic	Intergenic	14596	NM_130445	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr15.37172893.-	chr15	37172893	37172894	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5841	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr16.87799869.+	chr16	87799869	87799870	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-271	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr12.112407440.-	chr12	112407440	112407441	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43583	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chrX.53808260.+	chrX	53808260	53808261	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94563	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr21.34914885.+	chr21	34914885	34914886	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	310	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr13.50177056.-	chr13	50177056	50177057	-	0	NA	Intergenic	AluY|SINE|Alu	17337	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr1.227982875.+	chr1	227982875	227982876	+	0	NA	Intergenic	Intergenic	-20543	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr2.234157306.-	chr2	234157306	234157307	-	0	NA	Intergenic	AluSx1|SINE|Alu	2911	NM_001190266	55054	Hs.529322	NM_001190266	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
chr7.151393104.-	chr7	151393104	151393105	-	0	NA	"intron (NM_001040633, intron 3 of 15)"	"intron (NM_001040633, intron 3 of 15)"	63760	NM_024429	51422	Hs.647072	NM_001040633	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	"protein kinase, AMP-activated, gamma 2 non-catalytic subunit"	protein-coding
chr12.66768087.+	chr12	66768087	66768088	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71752	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr15.100881434.-	chr15	100881434	100881435	-	0	NA	"exon (NM_139057, exon 2 of 22)"	"exon (NM_139057, exon 2 of 22)"	-749	NM_139057	170691	Hs.513200	NM_139057	ENSG00000140470	ADAMTS17	-	"ADAM metallopeptidase with thrombospondin type 1 motif, 17"	protein-coding
chr1.156215738.+	chr1	156215738	156215739	+	0	NA	"exon (NM_001272105, exon 5 of 9)"	"exon (NM_001272105, exon 5 of 9)"	2170	NM_001272106	79957	Hs.235873	NM_001272104	ENSG00000160781	PAQR6	-	progestin and adipoQ receptor family member VI	protein-coding
chr11.44361798.+	chr11	44361798	44361799	+	0	NA	Intergenic	AluJb|SINE|Alu	-30082	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr20.58483225.-	chr20	58483225	58483226	-	0	NA	"intron (NM_014258, intron 13 of 43)"	AluY|SINE|Alu	-23984	NM_014258	10388	Hs.202676	NM_014258	ENSG00000196074	SYCP2	SCP2	synaptonemal complex protein 2	protein-coding
chrX.70493580.+	chrX	70493580	70493581	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9462	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr13.32980228.-	chr13	32980228	32980229	-	0	NA	"intron (NM_052818, intron 3 of 4)"	AluY|SINE|Alu	-22087	NM_052818	90634	Hs.732118	NM_001079691	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
chr16.181438.-	chr16	181438	181439	-	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	-7259	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr9.34070271.-	chr9	34070271	34070272	-	0	NA	Intergenic	AluSz|SINE|Alu	21324	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr16.1959140.+	chr16	1959140	1959141	+	0	NA	Intergenic	Intergenic	9091	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr12.122052231.-	chr12	122052231	122052232	-	0	NA	Intergenic	AluSg7|SINE|Alu	12224	NM_032790	84876	Hs.55148	NM_032790		ORAI1	CRACM1|ORAT1|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
chr21.33279981.+	chr21	33279981	33279982	+	0	NA	"intron (NM_014586, intron 1 of 10)"	L1MB2|LINE|L1	34353	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr1.8191563.+	chr1	8191563	8191564	+	0	NA	Intergenic	AluSx|SINE|Alu	-105170	NM_018948	54206	Hs.605445	NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
chrX.13062305.+	chrX	13062305	13062306	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	612	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr12.30327120.+	chr12	30327120	30327121	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389428	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr16.87799861.+	chr16	87799861	87799862	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-263	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr16.31932537.+	chr16	31932537	31932538	+	0	NA	Intergenic	AluY|SINE|Alu	47458	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr19.40337074.+	chr19	40337074	40337075	+	0	NA	promoter-TSS (NM_001436)	promoter-TSS (NM_001436)	-20	NM_001436	2091	Hs.299002	NM_001436	ENSG00000105202	FBL	FIB|FLRN|RNU3IP1	fibrillarin	protein-coding
chr1.79749325.-	chr1	79749325	79749326	-	0	NA	Intergenic	AluSx|SINE|Alu	276830	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr15.75701837.-	chr15	75701837	75701838	-	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	40869	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr22.24237023.+	chr22	24237023	24237024	+	0	NA	"exon (NM_002415, exon 2 of 3)"	"exon (NM_002415, exon 2 of 3)"	458	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr7.38566133.+	chr7	38566133	38566134	+	0	NA	"intron (NM_139316, intron 2 of 19)"	AluSz6|SINE|Alu	105034	NM_139316	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
chr20.62108109.-	chr20	62108109	62108110	-	0	NA	Intergenic	AluSq2|SINE|Alu	4116	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr7.5244739.+	chr7	5244739	5244740	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	-9161	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr1.70733974.+	chr1	70733974	70733975	+	0	NA	"intron (NM_030816, intron 12 of 12)"	AluSq2|SINE|Alu	62609	NM_001190987	9295	Hs.479693	NM_001190987	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine/arginine-rich splicing factor 11	protein-coding
chr15.33011479.+	chr15	33011479	33011480	+	0	NA	"intron (NM_013372, intron 1 of 1)"	CpG	1274	NM_001191322	26585	Hs.40098	NM_001191322	ENSG00000166923	GREM1	CKTSF1B1|DAND2|DRM|GREMLIN|IHG-2	"gremlin 1, DAN family BMP antagonist"	protein-coding
chr22.32255391.-	chr22	32255391	32255392	-	0	NA	"intron (NM_001242897, intron 30 of 39)"	AluSz|SINE|Alu	85088	NM_003405	7533	Hs.226755	NM_003405	ENSG00000128245	YWHAH	YWHA1	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide"	protein-coding
chr13.89907354.-	chr13	89907354	89907355	-	0	NA	Intergenic	AluSx1|SINE|Alu	-309313	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	miscRNA
chr15.76627339.+	chr15	76627339	76627340	+	0	NA	Intergenic	AluSg|SINE|Alu	-1808	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr10.35559797.-	chr10	35559797	35559798	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	-23844	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr2.237068273.+	chr2	237068273	237068274	+	0	NA	Intergenic	CpG	8379	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr16.5016330.-	chr16	5016330	5016331	-	0	NA	"intron (NM_014692, intron 2 of 15)"	AluSx1|SINE|Alu	-8012	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14-like 5 (S. cerevisiae)	protein-coding
chr4.177147017.+	chr4	177147017	177147018	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30195	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr2.11248136.+	chr2	11248136	11248137	+	0	NA	"intron (NR_040080, intron 6 of 8)"	L1MEd|LINE|L1	24166	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	miscRNA
chr5.57859505.-	chr5	57859505	57859506	-	0	NA	Intergenic	SVA_A|Other|Other	19434	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr16.53447745.-	chr16	53447745	53447746	-	0	NA	Intergenic	AluSx|SINE|Alu	20606	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr19.973595.-	chr19	973595	973596	-	0	NA	TTS (NM_005224)	TTS (NM_005224)	10733	NM_024100	57418	Hs.325321	NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
chr3.109059742.+	chr3	109059742	109059743	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3323	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr15.28340375.-	chr15	28340375	28340376	-	0	NA	"intron (NM_000275, intron 1 of 23)"	CpG	-4083	NM_000275	4948	Hs.654411	NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
chr5.150027555.-	chr5	150027555	150027556	-	0	NA	"exon (NM_001166209, exon 3 of 3)"	"exon (NM_001166209, exon 3 of 3)"	-7348	NM_007286	11346	Hs.435228	NM_001109974	ENSG00000171992	SYNPO	-	synaptopodin	protein-coding
chr3.42642378.-	chr3	42642378	42642379	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-194	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr16.13534744.+	chr16	13534744	13534745	+	0	NA	Intergenic	AluSc|SINE|Alu	-479270	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr1.224419920.-	chr1	224419920	224419921	-	0	NA	"intron (NM_001243146, intron 19 of 20)"	AluY|SINE|Alu	-24923	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2	microRNA 320b-2	miscRNA
chr7.5396342.-	chr7	5396342	5396343	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	-66835	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr4.114652850.+	chr4	114652850	114652851	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30233	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr13.89907356.-	chr13	89907356	89907357	-	0	NA	Intergenic	AluSx1|SINE|Alu	-309311	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	miscRNA
chr2.55921043.-	chr2	55921043	55921044	-	0	NA	promoter-TSS (NM_033109)	promoter-TSS (NM_033109)	-2	NM_033109	87178	Hs.388733	NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
chrM.1284.-	chrM	1284	1285	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.425347.-	chr9	425347	425348	-	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	44947	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr1.32122149.+	chr1	32122149	32122150	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11311	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr21.47581209.-	chr21	47581209	47581210	-	0	NA	"3' UTR (NM_032261, exon 4 of 4)"	"3' UTR (NM_032261, exon 4 of 4)"	5728	NM_206965	10841	Hs.415846	NM_006657	ENSG00000160282	FTCD	LCHC1	formiminotransferase cyclodeaminase	protein-coding
chrX.91037148.+	chrX	91037148	91037149	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2888	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr9.1042989.-	chr9	1042989	1042990	-	0	NA	Intergenic	Intergenic	7357	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr8.141608715.-	chr8	141608715	141608716	-	0	NA	"intron (NM_001164623, intron 1 of 17)"	"intron (NM_001164623, intron 1 of 17)"	-36931	NM_012154	27161	Hs.743313	NM_001164623	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute RISC catalytic component 2	protein-coding
chr10.134034461.-	chr10	134034461	134034462	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34047	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr14.76577615.-	chr14	76577615	76577616	-	0	NA	Intergenic	AluSx1|SINE|Alu	40644	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr20.29518632.-	chr20	29518632	29518633	-	0	NA	Intergenic	SST1|Satellite|centr	93247	NR_003579	284802	Hs.653099	NR_003579	ENSG00000149531	FRG1B	C20orf80|bA348I14.2	"FSHD region gene 1 family, member B"	pseudo
chr10.59080743.-	chr10	59080743	59080744	-	0	NA	Intergenic	AluY|SINE|Alu	16424	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr14.74438803.+	chr14	74438803	74438804	+	0	NA	"intron (NM_001249, intron 13 of 15)"	AluSg|SINE|Alu	-21686	NM_152445	145483	Hs.660789	NM_152445	ENSG00000156050	FAM161B	C14orf44|c14_5547	"family with sequence similarity 161, member B"	protein-coding
chr5.74349211.-	chr5	74349211	74349212	-	0	NA	Intergenic	CpG	22487	NM_016591	51301	Hs.272404	NM_016591	ENSG00000176928	GCNT4	C2GNT3	"glucosaminyl (N-acetyl) transferase 4, core 2"	protein-coding
chr12.126371190.+	chr12	126371190	126371191	+	0	NA	Intergenic	AluY|SINE|Alu	96730	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chr10.47621254.-	chr10	47621254	47621255	-	0	NA	Intergenic	Intergenic	125666	NM_001630	244	Hs.705389	NM_001630	ENSG00000186807	ANXA8L2	ANXA8|bA145E20.2	annexin A8-like 2	protein-coding
chrX.122993629.-	chrX	122993629	122993630	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	33	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr7.532133.-	chr7	532133	532134	-	0	NA	Intergenic	Intergenic	-27348	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr4.77348094.-	chr4	77348094	77348095	-	0	NA	Intergenic	AluY|SINE|Alu	8159	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr4.1358104.-	chr4	1358104	1358105	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17000	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr5.168556392.+	chr5	168556392	168556393	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134306	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chr2.38825079.-	chr2	38825079	38825080	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5099	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr2.240371684.+	chr2	240371684	240371685	+	0	NA	Intergenic	SVA_D|Other|Other	-49041	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.1141617.+	chr9	1141617	1141618	+	0	NA	Intergenic	AluY|SINE|Alu	90997	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr7.102938022.-	chr7	102938022	102938023	-	0	NA	"intron (NM_004279, intron 1 of 12)"	CpG	-149	NM_004279	9512	Hs.184211	NM_004279		PMPCB	Beta-MPP|MPP11|MPPB|MPPP52|P-52	peptidase (mitochondrial processing) beta	protein-coding
chr4.153897126.+	chr4	153897126	153897127	+	0	NA	"exon (NM_033393, exon 11 of 11)"	"exon (NM_033393, exon 11 of 11)"	32991	NM_033393	85462	Hs.742906	NM_033393	ENSG00000137460	FHDC1	-	FH2 domain containing 1	protein-coding
chr7.150812712.-	chr7	150812712	150812713	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28886	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr3.64431139.-	chr3	64431139	64431140	-	0	NA	Intergenic	CpG	220008	NM_198859	166336	Hs.743295	NM_198859	ENSG00000163637	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
chr16.3203737.-	chr16	3203737	3203738	-	0	NA	Intergenic	AluSg|SINE|Alu	-18603	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr6.6004303.-	chr6	6004303	6004304	-	0	NA	"intron (NM_016588, intron 1 of 2)"	CpG-21667	-3330	NM_016588	51299	Hs.103291	NM_016588		NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
chr1.222223109.+	chr1	222223109	222223110	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-307593	NM_144729	11221	Hs.732301	NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
chr14.71374353.-	chr14	71374353	71374354	-	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	-231	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr19.36736658.+	chr19	36736658	36736659	+	0	NA	Intergenic	CpG	-30672	NM_001042474	147929	Hs.596338	NM_001042474	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
chr8.6651222.-	chr8	6651222	6651223	-	0	NA	Intergenic	AluSx|SINE|Alu	41854	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	LOC100652791	-	uncharacterized LOC100652791	miscRNA
chr17.4697369.+	chr17	4697369	4697370	+	0	NA	Intergenic	AluY|SINE|Alu	-2070	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr15.25196052.+	chr15	25196052	25196053	+	0	NA	"intron (NM_022807, intron 4 of 12)"	AluSx1|SINE|Alu	-4018	NM_022804	8926	Hs.564847	NM_005678	ENSG00000214265	SNURF	-	SNRPN upstream reading frame	protein-coding
chr11.89400828.+	chr11	89400828	89400829	+	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	8363	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr7.1001901.-	chr7	1001901	1001902	-	0	NA	Intergenic	Intergenic	7612	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr14.101693707.-	chr14	101693707	101693708	-	0	NA	Intergenic	Intergenic	-157459	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr9.133788024.-	chr9	133788024	133788025	-	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	18799	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr7.54614230.+	chr7	54614230	54614231	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4211	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr3.57719313.-	chr3	57719313	57719314	-	0	NA	Intergenic	AluSg4|SINE|Alu	23861	NM_007159	7871	Hs.476432	NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
chr6.88118011.-	chr6	88118011	88118012	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-321	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr5.27408075.+	chr5	27408075	27408076	+	0	NA	Intergenic	AluY|SINE|Alu	-64324	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr9.138065703.-	chr9	138065703	138065704	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7752	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr6.88118028.-	chr6	88118028	88118029	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-338	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr21.32687828.-	chr21	32687828	32687829	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243462	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr1.1943838.+	chr1	1943838	1943839	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6930	NM_000815	2563	Hs.113882	NM_000815	ENSG00000187730	GABRD	EIG10|EJM7|GEFSP5	"gamma-aminobutyric acid (GABA) A receptor, delta"	protein-coding
chrX.42144951.-	chrX	42144951	42144952	-	0	NA	Intergenic	SVA_D|Other|Other	362664	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr6.46742378.+	chr6	46742378	46742379	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18716	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr2.71357892.+	chr2	71357892	71357893	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	448	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr9.100747349.+	chr9	100747349	100747350	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1860	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr2.207036849.+	chr2	207036849	207036850	+	0	NA	Intergenic	SVA_D|Other|Other	9897	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr2.101772934.-	chr2	101772934	101772935	-	0	NA	Intergenic	AluY|SINE|Alu	5088	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	"TBC1 domain family, member 8 (with GRAM domain)"	protein-coding
chr12.42621975.+	chr12	42621975	42621976	+	0	NA	"intron (NM_001190979, intron 2 of 4)"	SVA_F|Other|Other	10114	NM_001190977	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr10.65193044.-	chr10	65193044	65193045	-	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSp|SINE|Alu	31945	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr2.70416466.+	chr2	70416466	70416467	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	1685	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr4.48016936.+	chr4	48016936	48016937	+	0	NA	Intergenic	AluY|SINE|Alu	-1855	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr12.42632260.+	chr12	42632260	42632261	+	0	NA	promoter-TSS (NR_034000)	promoter-TSS (NR_034000)	-106	NM_005748	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr11.46919678.-	chr11	46919678	46919679	-	0	NA	"intron (NM_002334, intron 7 of 37)"	SVA_D|Other|Other	-20495	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
chr19.49679204.-	chr19	49679204	49679205	-	0	NA	"intron (NM_017636, intron 9 of 24)"	AluSx1|SINE|Alu	-18188	NM_017636	54795	Hs.467101	NM_001195227	ENSG00000130529	TRPM4	PFHB1B|TRPM4B	"transient receptor potential cation channel, subfamily M, member 4"	protein-coding
chr9.139071881.+	chr9	139071881	139071882	+	0	NA	Intergenic	Intergenic	23123	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr20.48080579.+	chr20	48080579	48080580	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18602	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr10.14851251.+	chr10	14851251	14851252	+	0	NA	Intergenic	AluY|SINE|Alu	28732	NM_001029954	441549	Hs.559067	NM_001029954		CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
chr12.133107582.-	chr12	133107582	133107583	-	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	-40425	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr22.18593153.+	chr22	18593153	18593154	+	0	NA	promoter-TSS (NM_001193414)	promoter-TSS (NM_001193414)	-300	NM_018943	51807	Hs.137400	NM_001193414	ENSG00000183785	TUBA8	TUBAL2	"tubulin, alpha 8"	protein-coding
chr6.132850770.+	chr6	132850770	132850771	+	0	NA	Intergenic	AluY|SINE|Alu	-8657	NM_175057	134860	Hs.434116	NM_175057	ENSG00000237110	TAAR9	TA3|TAR3|TAR9|TRAR3	trace amine associated receptor 9 (gene/pseudogene)	protein-coding
chr5.694016.+	chr5	694016	694017	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-506	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr13.45945067.-	chr13	45945067	45945068	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29587	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr15.41687846.-	chr15	41687846	41687847	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6812	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr14.105043976.-	chr14	105043976	105043977	-	0	NA	Intergenic	Intergenic	2080	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chr19.50906066.-	chr19	50906066	50906067	-	0	NA	"intron (NM_002691, intron 8 of 26)"	CpG-14235	16129	NM_001244000	6689	Hs.437905	NM_001243998	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding
chr2.109090592.+	chr2	109090592	109090593	+	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	25015	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr13.81972945.+	chr13	81972945	81972946	+	0	NA	Intergenic	AluY|SINE|Alu	-1057859	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr12.121168069.+	chr12	121168069	121168070	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSg|SINE|Alu	4498	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr5.39649203.+	chr5	39649203	39649204	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223868	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr3.172180198.-	chr3	172180198	172180199	-	0	NA	Intergenic	AluY|SINE|Alu	13952	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr1.31586341.-	chr1	31586341	31586342	-	0	NA	Intergenic	AluY|SINE|Alu	47777	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chrX.141491539.+	chrX	141491539	141491540	+	0	NA	Intergenic	AluY|SINE|Alu	-198463	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr17.42869167.-	chr17	42869167	42869168	-	0	NA	Intergenic	AluY|SINE|Alu	-32599	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr17.8082289.-	chr17	8082289	8082290	-	0	NA	Intergenic	AluSx|SINE|Alu	2575	NM_032354	84314	Hs.513933	NM_032354		TMEM107	GRVS638|PRO1268	transmembrane protein 107	protein-coding
chr22.30781435.-	chr22	30781435	30781436	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	"intron (NM_001017981, intron 4 of 8)"	-1867	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr7.139934035.-	chr7	139934035	139934036	-	0	NA	Intergenic	AluYd8|SINE|Alu	-56974	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	LOC100134229	-	uncharacterized LOC100134229	miscRNA
chr4.26862269.-	chr4	26862269	26862270	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	44	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr1.40259984.+	chr1	40259984	40259985	+	0	NA	Intergenic	AluY|SINE|Alu	-5451	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr17.8625910.+	chr17	8625910	8625911	+	0	NA	Intergenic	AluY|SINE|Alu	22244	NM_144681	146849	Hs.121438	NM_001158261	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
chr4.6271485.+	chr4	6271485	6271486	+	0	NA	promoter-TSS (NM_006005)	promoter-TSS (NM_006005)	-92	NM_001145853	7466	Hs.727283	NM_001145853	ENSG00000109501	WFS1	WFRS|WFS|WFSL	Wolfram syndrome 1 (wolframin)	protein-coding
chr14.51521292.-	chr14	51521292	51521293	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluJb|SINE|Alu	-41130	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr12.131551494.-	chr12	131551494	131551495	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98062	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr7.98971935.+	chr7	98971935	98971936	+	0	NA	promoter-TSS (NM_005720)	promoter-TSS (NM_005720)	-363	NM_005720	10095	Hs.489284	NM_005720	ENSG00000130429	ARPC1B	ARC41|p40-ARC|p41-ARC	"actin related protein 2/3 complex, subunit 1B, 41kDa"	protein-coding
chr1.181058693.+	chr1	181058693	181058694	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1055	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr16.1979903.+	chr16	1979903	1979904	+	0	NA	Intergenic	CpG	-11672	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr7.1570700.-	chr7	1570700	1570701	-	0	NA	"intron (NM_002360, intron 1 of 2)"	CpG	-332	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr21.43593409.+	chr21	43593409	43593410	+	0	NA	Intergenic	Intergenic	-26390	NM_207627	9619	Hs.124649	NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	"ATP-binding cassette, sub-family G (WHITE), member 1"	protein-coding
chr12.79439104.+	chr12	79439104	79439105	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-329	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr16.33943416.+	chr16	33943416	33943417	+	0	NA	Intergenic	LSAU|Satellite|Satellite	19087	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr5.37382793.+	chr5	37382793	37382794	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3381	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr17.4046077.-	chr17	4046077	4046078	-	0	NA	promoter-TSS (NM_001254756)	promoter-TSS (NM_001254756)	-176	NM_015113	23140	Hs.277624	NM_015113	ENSG00000074755	ZZEF1	ZZZ4	"zinc finger, ZZ-type with EF-hand domain 1"	protein-coding
chr12.133328156.+	chr12	133328156	133328157	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10295	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr18.77627531.-	chr18	77627531	77627532	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3863	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr6.13335697.-	chr6	13335697	13335698	-	0	NA	Intergenic	AluYa5|SINE|Alu	6910	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr9.127260630.+	chr9	127260630	127260631	+	0	NA	"intron (NM_004959, intron 4 of 6)"	"intron (NM_004959, intron 4 of 6)"	9069	NM_004959	2516	Hs.495108	NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3	"nuclear receptor subfamily 5, group A, member 1"	protein-coding
chr6.150275510.+	chr6	150275510	150275511	+	0	NA	Intergenic	CpG	-9633	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr5.1494535.-	chr5	1494535	1494536	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29541	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr17.45349572.+	chr17	45349572	45349573	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18364	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr2.145273796.-	chr2	145273796	145273797	-	0	NA	"intron (NR_033258, intron 2 of 2)"	CpG	3385	NR_040248	100303491	Hs.560789	NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	miscRNA
chr12.66768090.+	chr12	66768090	66768091	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71755	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr12.3040261.-	chr12	3040261	3040262	-	0	NA	"exon (NM_001160408, exon 6 of 12)"	"exon (NM_001160408, exon 6 of 12)"	28217	NM_003213	7004	Hs.94865	NM_003213	ENSG00000197905	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain family member 4	protein-coding
chr18.11086390.+	chr18	11086390	11086391	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62371	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr6.127755453.-	chr6	127755453	127755454	-	0	NA	Intergenic	AluSx1|SINE|Alu	-25082	NM_014702	9729	Hs.319247	NM_014702		KIAA0408	RP3-403A15.2	KIAA0408	protein-coding
chr13.112726529.+	chr13	112726529	112726530	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4616	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr7.155246297.-	chr7	155246297	155246298	-	0	NA	Intergenic	Intergenic	4527	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr2.242489909.+	chr2	242489909	242489910	+	0	NA	"intron (NR_033346, intron 1 of 1)"	"intron (NR_033346, intron 1 of 1)"	-8237	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr22.23924879.-	chr22	23924879	23924880	-	0	NA	Intergenic	AluSx1|SINE|Alu	2384	NM_152855	3543	Hs.348935	NM_020070	ENSG00000128322	IGLL1	14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2	immunoglobulin lambda-like polypeptide 1	protein-coding
chr1.110881143.+	chr1	110881143	110881144	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	650	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chrX.63045991.-	chrX	63045991	63045992	-	0	NA	Intergenic	SVA_B|Other|Other	40024	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468	microRNA 1468	miscRNA
chr8.43274653.+	chr8	43274653	43274654	+	0	NA	Intergenic	SVA_D|Other|Other	127068	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr3.52918370.+	chr3	52918370	52918371	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13227	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr11.73347218.+	chr11	73347218	73347219	+	0	NA	Intergenic	AluSq|SINE|Alu	-10005	NM_001130033	58473	Hs.445489	NM_001130033	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	"pleckstrin homology domain containing, family B (evectins) member 1"	protein-coding
chr3.84566261.+	chr3	84566261	84566262	+	0	NA	Intergenic	AluY|SINE|Alu	352465	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr5.2739349.+	chr5	2739349	2739350	+	0	NA	Intergenic	CpG	12420	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr3.189144190.+	chr3	189144190	189144191	+	0	NA	Intergenic	AluSx|SINE|Alu	-185807	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	miscRNA
chr19.10400070.+	chr19	10400070	10400071	+	0	NA	promoter-TSS (NM_003259)	promoter-TSS (NM_003259)	-585	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr12.118282823.-	chr12	118282823	118282824	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123205	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr22.49635293.+	chr22	49635293	49635294	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	372711	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr2.242530369.+	chr2	242530369	242530370	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	26547	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr6.8388520.-	chr6	8388520	8388521	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47274	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr5.122861559.+	chr5	122861559	122861560	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13766	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr7.54614216.+	chr7	54614216	54614217	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4197	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr17.74632768.-	chr17	74632768	74632769	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7126	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr20.61885465.-	chr20	61885465	61885466	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-135	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr3.53225279.-	chr3	53225279	53225280	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-30056	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr6.43016683.-	chr6	43016683	43016684	-	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	-5000	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr2.71357884.+	chr2	71357884	71357885	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	440	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr8.1312675.-	chr8	1312675	1312676	-	0	NA	Intergenic	Intergenic	61848	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr11.89400811.-	chr11	89400811	89400812	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8346	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr1.183670831.-	chr1	183670831	183670832	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48383	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr20.43342004.-	chr20	43342004	43342005	-	0	NA	Intergenic	AluSx|SINE|Alu	1881	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr22.19137496.+	chr22	19137496	19137497	+	0	NA	"intron (NM_005315, intron 1 of 2)"	CpG-17504	300	NM_005315	2928	Hs.534318	NM_005315		GSC2	GSCL	goosecoid homeobox 2	protein-coding
chr1.22716414.-	chr1	22716414	22716415	-	0	NA	Intergenic	AluY|SINE|Alu	61930	NM_014870	9923	Hs.418966	NM_001083621	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
chr11.101885003.-	chr11	101885003	101885004	-	0	NA	Intergenic	AluY|SINE|Alu	33166	NM_001195005	85016	Hs.98328	NM_001195005	ENSG00000137691	C11orf70	-	chromosome 11 open reading frame 70	protein-coding
chr7.2716329.-	chr7	2716329	2716330	-	0	NA	Intergenic	Intergenic	2834	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr20.13660598.+	chr20	13660598	13660599	+	0	NA	Intergenic	AluY|SINE|Alu	-41015	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr19.21734837.-	chr19	21734837	21734838	-	0	NA	Intergenic	SVA_D|Other|Other	-46400	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr11.31560736.-	chr11	31560736	31560737	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29439	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr7.1547605.+	chr7	1547605	1547606	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3587	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr2.7148780.-	chr2	7148780	7148781	-	0	NA	"intron (NM_014746, intron 3 of 8)"	"intron (NM_014746, intron 3 of 8)"	89967	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	miscRNA
chr7.3828783.-	chr7	3828783	3828784	-	0	NA	"intron (NM_152744, intron 4 of 44)"	"intron (NM_152744, intron 4 of 44)"	340534	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr19.50906064.-	chr19	50906064	50906065	-	0	NA	"intron (NM_002691, intron 8 of 26)"	CpG-14235	16131	NM_001244000	6689	Hs.437905	NM_001243998	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding
chr5.1586729.-	chr5	1586729	1586730	-	0	NA	"intron (NR_003263, intron 3 of 6)"	SVA_D|Other|Other	-7917	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3"	pseudo
chr19.39960410.+	chr19	39960410	39960411	+	0	NA	"intron (NM_001111020, intron 16 of 29)"	"intron (NM_001111020, intron 16 of 29)"	-10642	NM_001001563	92609	Hs.597106	NM_001001563		TIMM50	TIM50|TIM50L	translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)	protein-coding
chrX.141491550.-	chrX	141491550	141491551	-	0	NA	Intergenic	AluY|SINE|Alu	198474	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr14.23517080.-	chr14	23517080	23517081	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5704	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr9.105850374.-	chr9	105850374	105850375	-	0	NA	Intergenic	AluYc|SINE|Alu	-92781	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr8.61564427.+	chr8	61564427	61564428	+	0	NA	Intergenic	CpG	-26897	NM_017780	55636	Hs.733236	NM_017780	ENSG00000171316	CHD7	HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
chr22.49880382.+	chr22	49880382	49880383	+	0	NA	Intergenic	AluSx1|SINE|Alu	170808	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr3.47601204.-	chr3	47601204	47601205	-	0	NA	Intergenic	AluY|SINE|Alu	-19155	NM_001206944	10675	Hs.45127	NM_001206942		CSPG5	NGC	chondroitin sulfate proteoglycan 5 (neuroglycan C)	protein-coding
chrX.54371316.-	chrX	54371316	54371317	-	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	-13122	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr7.155834335.-	chr7	155834335	155834336	-	0	NA	Intergenic	Intergenic	229368	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr17.19880784.+	chr17	19880784	19880785	+	0	NA	"intron (NM_007202, intron 1 of 14)"	CpG	385	NM_007202	11216	Hs.642676	NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding
chr1.60870830.-	chr1	60870830	60870831	-	0	NA	Intergenic	AluYa5|SINE|Alu	331388	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chrX.100277465.-	chrX	100277465	100277466	-	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	-29640	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr2.65216542.+	chr2	65216542	65216543	+	0	NA	promoter-TSS (NM_003038)	promoter-TSS (NM_003038)	47	NM_003038	6509	Hs.654352	NM_001135581	ENSG00000115902	SLC1A4	ASCT1|SATT	"solute carrier family 1 (glutamate/neutral amino acid transporter), member 4"	protein-coding
chrX.99100662.-	chrX	99100662	99100663	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94179	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr2.121947795.-	chr2	121947795	121947796	-	0	NA	Intergenic	Intergenic	-94983	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
chr11.2213987.-	chr11	2213987	2213988	-	0	NA	Intergenic	Intergenic	-19694	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr3.160757499.+	chr3	160757499	160757500	+	0	NA	"intron (NM_139245, intron 2 of 3)"	AluY|SINE|Alu	65184	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr20.61371657.-	chr20	61371657	61371658	-	0	NA	"intron (NM_002531, intron 1 of 3)"	"intron (NM_002531, intron 1 of 3)"	-31468	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
chr6.114067446.-	chr6	114067446	114067447	-	0	NA	Intergenic	AluY|SINE|Alu	111081	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr2.238280514.+	chr2	238280514	238280515	+	0	NA	"exon (NM_057167, exon 8 of 43)"	"exon (NM_057167, exon 8 of 43)"	42336	NM_057167	1293	Hs.233240	NM_004369	ENSG00000163359	COL6A3	-	"collagen, type VI, alpha 3"	protein-coding
chr5.89746522.+	chr5	89746522	89746523	+	0	NA	Intergenic	AluSz|SINE|Alu	24063	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr1.95392276.+	chr1	95392276	95392277	+	0	NA	"intron (NM_001839, intron 1 of 6)"	CpG	459	NM_001839	1266	Hs.483454	NM_001839	ENSG00000117519	CNN3	-	"calponin 3, acidic"	protein-coding
chr2.14112574.-	chr2	14112574	14112575	-	0	NA	Intergenic	AluY|SINE|Alu	660236	NM_145175	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	"family with sequence similarity 84, member A"	protein-coding
chr9.130867498.-	chr9	130867498	130867499	-	0	NA	"intron (NM_001265614, intron 6 of 10)"	AluSx1|SINE|Alu	-6737	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr19.11306120.-	chr19	11306120	11306121	-	0	NA	promoter-TSS (NM_015493)	promoter-TSS (NM_015493)	854	NM_015493	25959	Hs.723365	NM_001136191	ENSG00000197256	KANK2	ANKRD25|MXRA3|SIP	KN motif and ankyrin repeat domains 2	protein-coding
chr17.79427790.+	chr17	79427790	79427791	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9576	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr2.43253949.-	chr2	43253949	43253950	-	0	NA	Intergenic	Intergenic	-199796	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chrX.29649796.+	chrX	29649796	29649797	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-583879	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr13.49426611.+	chr13	49426611	49426612	+	0	NA	Intergenic	AluSp|SINE|Alu	-123437	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr18.73357744.-	chr18	73357744	73357745	-	0	NA	Intergenic	L2|LINE|L2	218155	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr9.72433086.+	chr9	72433086	72433087	+	0	NA	Intergenic	AluY|SINE|Alu	2569	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr9.107407968.+	chr9	107407968	107407969	+	0	NA	Intergenic	AluSx|SINE|Alu	-27483	NM_001001956	286362	Hs.553682	NM_001001956	ENSG00000136839	OR13C9	OR37L|OR9-13	"olfactory receptor, family 13, subfamily C, member 9"	protein-coding
chr19.23474390.-	chr19	23474390	23474391	-	0	NA	Intergenic	AluSx|SINE|Alu	41218	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr15.60297051.-	chr15	60297051	60297052	-	0	NA	"intron (NM_012182, intron 1 of 1)"	CpG	-630	NM_012182	27023	Hs.734475	NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
chr7.76022435.-	chr7	76022435	76022436	-	0	NA	"intron (NM_080744, intron 9 of 10)"	CpG	4406	NM_007155	7784	Hs.656137	NM_001110354	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3 (sperm receptor)	protein-coding
chr3.8635275.+	chr3	8635275	8635276	+	0	NA	Intergenic	Intergenic	21807	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr2.86948189.-	chr2	86948189	86948190	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	-56	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr13.88664987.+	chr13	88664987	88664988	+	0	NA	Intergenic	AluSx1|SINE|Alu	340117	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr13.66584772.+	chr13	66584772	66584773	+	0	NA	Intergenic	AluY|SINE|Alu	-814529	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr10.35374590.-	chr10	35374590	35374591	-	0	NA	"intron (NM_001198777, intron 1 of 20)"	AluY|SINE|Alu	-4721	NM_003591	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr5.178657992.-	chr5	178657992	178657993	-	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	-114439	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr19.35418193.+	chr19	35418193	35418194	+	0	NA	"intron (NM_001099438, intron 1 of 4)"	CpG	386	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr3.181626455.-	chr3	181626455	181626456	-	0	NA	Intergenic	AluY|SINE|Alu	-196743	NM_003106	6657	Hs.732963	NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
chr1.240947800.-	chr1	240947800	240947801	-	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	172338	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr18.55445749.+	chr18	55445749	55445750	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24578	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr21.45566092.-	chr21	45566092	45566093	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12598	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr17.4926597.+	chr17	4926597	4926598	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12130	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr12.1044042.+	chr12	1044042	1044043	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14821	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr16.56459032.-	chr16	56459032	56459033	-	0	NA	"exon (NM_001144, exon 1 of 14)"	"exon (NM_001144, exon 1 of 14)"	-418	NM_001144	267	Hs.295137	NM_001144	ENSG00000159461	AMFR	GP78|RNF45	"autocrine motility factor receptor, E3 ubiquitin protein ligase"	protein-coding
chr17.66130523.+	chr17	66130523	66130524	+	0	NA	"non-coding (NR_027418, exon 6 of 6)"	"non-coding (NR_027418, exon 6 of 6)"	32827	NR_027418	100499466	Hs.647405	NR_027418		LINC00674	-	long intergenic non-protein coding RNA 674	miscRNA
chr7.6194290.+	chr7	6194290	6194291	+	0	NA	"exon (NM_032172, exon 15 of 18)"	"exon (NM_032172, exon 15 of 18)"	49740	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
chr17.26336754.-	chr17	26336754	26336755	-	0	NA	Intergenic	AluSz|SINE|Alu	32934	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr12.79438985.+	chr12	79438985	79438986	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-448	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr2.232557221.+	chr2	232557221	232557222	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16014	NM_002823	5757	Hs.459927	NM_001099285	ENSG00000187514	PTMA	TMSA	"prothymosin, alpha"	protein-coding
chr15.74818882.+	chr15	74818882	74818883	+	0	NA	Intergenic	AluY|SINE|Alu	-14666	NM_006465	10620	Hs.655532	NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding
chr2.210525400.-	chr2	210525400	210525401	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80997	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr3.126207249.-	chr3	126207249	126207250	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12487	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr5.133831534.-	chr5	133831534	133831535	-	0	NA	Intergenic	AluY|SINE|Alu	30264	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr13.21872311.-	chr13	21872311	21872312	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-47	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr20.52741108.+	chr20	52741108	52741109	+	0	NA	Intergenic	AluSx1|SINE|Alu	49408	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr7.3456537.+	chr7	3456537	3456538	+	0	NA	"intron (NM_152744, intron 1 of 44)"	AluSq|SINE|Alu	115457	NM_152744	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr2.4156474.-	chr2	4156474	4156475	-	0	NA	Intergenic	Intergenic	134852	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr18.12734568.-	chr18	12734568	12734569	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31581	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr21.36180480.-	chr21	36180480	36180481	-	0	NA	"intron (NM_001001890, intron 4 of 5)"	"intron (NM_001001890, intron 4 of 5)"	-62358	NR_038885	100506385	Hs.120179	NR_038885	ENSG00000234380	LOC100506385	-	uncharacterized LOC100506385	miscRNA
chr11.111246386.-	chr11	111246386	111246387	-	0	NA	"intron (NM_006235, intron 1 of 4)"	AluY|SINE|Alu	-3771	NM_006235	5450	Hs.654525	NM_006235	ENSG00000110777	POU2AF1	BOB1|OBF-1|OBF1|OCAB	POU class 2 associating factor 1	protein-coding
chr1.173533913.+	chr1	173533913	173533914	+	0	NA	"intron (NM_178527, intron 9 of 27)"	AluY|SINE|Alu	38320	NM_178527	284525	Hs.494981	NM_178527	ENSG00000162753	SLC9C2	RP3-436N22.2|SLC9A11	"solute carrier family 9, member C2 (putative)"	protein-coding
chr19.2593757.+	chr19	2593757	2593758	+	0	NA	"intron (NM_052847, intron 2 of 4)"	"intron (NM_052847, intron 2 of 4)"	108989	NM_052847	2788	Hs.735237	NM_052847	ENSG00000176533	GNG7	-	"guanine nucleotide binding protein (G protein), gamma 7"	protein-coding
chr9.14830726.+	chr9	14830726	14830727	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51195	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr18.67270899.-	chr18	67270899	67270900	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202615	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr9.138065638.-	chr9	138065638	138065639	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7817	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr2.157198628.+	chr2	157198628	157198629	+	0	NA	Intergenic	CpG	-9341	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr3.62358006.-	chr3	62358006	62358007	-	0	NA	"exon (NM_018008, exon 2 of 5)"	"exon (NM_018008, exon 2 of 5)"	-1184	NM_018008	55079	Hs.241523	NM_018008	ENSG00000153266	FEZF2	FEZ|FEZL|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
chr10.101292637.+	chr10	101292637	101292638	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-53	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr14.21542920.+	chr14	21542920	21542921	+	0	NA	"exon (NM_018071, exon 3 of 24)"	"exon (NM_018071, exon 3 of 24)"	4393	NM_018071	55701	Hs.35125	NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding
chr3.133292575.+	chr3	133292575	133292576	+	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	141	NM_017548	55573	Hs.518265	NM_001134422	ENSG00000091527	CDV3	H41	CDV3 homolog (mouse)	protein-coding
chr20.30161027.+	chr20	30161027	30161028	+	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	39	NR_046853	100874042	Hs.743198	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	miscRNA
chr7.45775961.+	chr7	45775961	45775962	+	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	32656	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr22.42027278.+	chr22	42027278	42027279	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9983	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr17.70637574.-	chr17	70637574	70637575	-	0	NA	promoter-TSS (NR_033876)	promoter-TSS (NR_033876)	963	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	miscRNA
chr16.1133096.-	chr16	1133096	1133097	-	0	NA	Intergenic	Intergenic	-4315	NM_001053	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr17.810091.+	chr17	810091	810092	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42740	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr4.4866943.-	chr4	4866943	4866944	-	0	NA	Intergenic	Intergenic	-5551	NM_002448	4487	Hs.424414	NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
chr7.1001921.+	chr7	1001921	1001922	+	0	NA	Intergenic	Intergenic	-7632	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr5.176482974.-	chr5	176482974	176482975	-	0	NA	"intron (NM_012279, intron 5 of 6)"	AluSx|SINE|Alu	30947	NM_213647	2264	Hs.165950	NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
chr16.33293953.-	chr16	33293953	33293954	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4749	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr3.14349511.+	chr3	14349511	14349512	+	0	NA	Intergenic	Intergenic	-94595	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr8.1562660.+	chr8	1562660	1562661	+	0	NA	"intron (NM_004745, intron 3 of 11)"	"intron (NM_004745, intron 3 of 11)"	113128	NM_004745	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr11.18445698.-	chr11	18445698	18445699	-	0	NA	"intron (NM_002301, intron 3 of 7)"	AluSg|SINE|Alu	-11845	NM_017448	3948	Hs.654377	NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
chrX.133328828.+	chrX	133328828	133328829	+	0	NA	Intergenic	AluSg|SINE|Alu	-24520	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr22.41104098.+	chr22	41104098	41104099	+	0	NA	Intergenic	AluY|SINE|Alu	28916	NM_005297	2847	Hs.248122	NM_005297	ENSG00000128285	MCHR1	GPR24|MCH1R|SLC1	melanin-concentrating hormone receptor 1	protein-coding
chr5.178157703.-	chr5	178157703	178157704	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	0	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr17.78559331.-	chr17	78559331	78559332	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40706	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr2.52338205.-	chr2	52338205	52338206	-	0	NA	Intergenic	AluY|SINE|Alu	1078531	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr4.41880499.+	chr4	41880499	41880500	+	0	NA	Intergenic	CpG	-56638	NM_018126	55161	Hs.31082	NM_018126	ENSG00000109133	TMEM33	1600019D15Rik|SHINC3	transmembrane protein 33	protein-coding
chr13.37494378.-	chr13	37494378	37494379	-	0	NA	promoter-TSS (NM_001127217)	promoter-TSS (NM_001127217)	-31	NM_001127217	4093	Hs.123119	NM_001127217	ENSG00000120693	SMAD9	MADH6|MADH9|SMAD8|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
chr14.55349983.+	chr14	55349983	55349984	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-5072	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr19.34263291.-	chr19	34263291	34263292	-	0	NA	"exon (NM_001127896, exon 4 of 4)"	"exon (NM_001127896, exon 4 of 4)"	24460	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr2.177042977.-	chr2	177042977	177042978	-	0	NA	"intron (NR_033979, intron 1 of 2)"	CpG	10330	NM_024501	3231	Hs.83465	NM_024501	ENSG00000128645	HOXD1	HOX4|HOX4G|Hox-4.7	homeobox D1	protein-coding
chr7.152584218.+	chr7	152584218	152584219	+	0	NA	Intergenic	AluJr4|SINE|Alu	127384	NR_073000	57180	Hs.647117	NM_001040135	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
chr4.106031861.+	chr4	106031861	106031862	+	0	NA	Intergenic	SVA_E|Other|Other	-35171	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chr19.18180420.+	chr19	18180420	18180421	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17277	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr6.18256502.+	chr6	18256502	18256503	+	0	NA	"intron (NM_001134709, intron 4 of 9)"	AluSp|SINE|Alu	8297	NM_003472	7913	Hs.484813	NM_001134709	ENSG00000124795	DEK	D6S231E	DEK oncogene	protein-coding
chr14.36549615.-	chr14	36549615	36549616	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9982	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr3.126736797.+	chr3	126736797	126736798	+	0	NA	"intron (NM_032242, intron 18 of 30)"	"intron (NM_032242, intron 18 of 30)"	29360	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
chr8.38831830.-	chr8	38831830	38831831	-	0	NA	TTS (NM_021623)	TTS (NM_021623)	-162	NM_153692	203100	Hs.661014	NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
chr2.192374847.-	chr2	192374847	192374848	-	0	NA	Intergenic	AluY|SINE|Alu	167951	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr2.221058170.-	chr2	221058170	221058171	-	0	NA	Intergenic	MER52A|LTR|ERV1	286884	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr7.5396281.+	chr7	5396281	5396282	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66896	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr5.8479647.+	chr5	8479647	8479648	+	0	NA	Intergenic	AluY|SINE|Alu	18609	NR_039663	100616142		NR_039663	ENSG00000266471	MIR4458	-	microRNA 4458	miscRNA
chr15.60727401.-	chr15	60727401	60727402	-	0	NA	"intron (NM_024611, intron 13 of 15)"	AluY|SINE|Alu	37216	NM_004039	302	Hs.511605	NM_001002857	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
chr2.204615947.-	chr2	204615947	204615948	-	0	NA	Intergenic	AluY|SINE|Alu	-44749	NM_001243077	940	Hs.443123	NM_001243077		CD28	Tp44	CD28 molecule	protein-coding
chr1.55505934.-	chr1	55505934	55505935	-	0	NA	"intron (NM_174936, intron 1 of 11)"	CpG	-785	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr6.150746818.+	chr6	150746818	150746819	+	0	NA	Intergenic	MER52A|LTR|ERV1	56790	NM_001164695	389434	Hs.310225	NM_001164694	ENSG00000009765	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
chr17.18755282.-	chr17	18755282	18755283	-	0	NA	Intergenic	AluSp|SINE|Alu	4330	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr2.83587593.+	chr2	83587593	83587594	+	0	NA	Intergenic	AluY|SINE|Alu	503666	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr11.2051338.+	chr11	2051338	2051339	+	0	NA	Intergenic	Intergenic	-32273	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr11.62551822.-	chr11	62551822	62551823	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3052	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chrX.20694444.-	chrX	20694444	20694445	-	0	NA	Intergenic	AluY|SINE|Alu	409694	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr19.1871372.-	chr19	1871372	1871373	-	0	NA	Intergenic	Intergenic	7808	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr4.114652887.-	chr4	114652887	114652888	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30196	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr21.47838719.-	chr21	47838719	47838720	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40143	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr17.61816417.+	chr17	61816417	61816418	+	0	NA	"intron (NM_001003786, intron 1 of 10)"	AluY|SINE|Alu	2913	NM_001165969	92335	Hs.514402	NM_001003786	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|Stlk	STE20-related kinase adaptor alpha	protein-coding
chr12.51681505.+	chr12	51681505	51681506	+	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	-17303	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr4.645451.-	chr4	645451	645452	-	0	NA	"intron (NM_000283, intron 3 of 21)"	CpG	1515	NM_001145292	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr2.11817356.+	chr2	11817356	11817357	+	0	NA	promoter-TSS (NM_001261428)	promoter-TSS (NM_001261428)	-349	NM_001261428	23175	Hs.739141	NM_001261427	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
chr14.34924167.-	chr14	34924167	34924168	-	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	-7301	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr19.6196966.-	chr19	6196966	6196967	-	0	NA	Intergenic	AluY|SINE|Alu	-61256	NM_030924	81616	Hs.465720	NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
chr16.68233539.+	chr16	68233539	68233540	+	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	36597	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr19.58193506.-	chr19	58193506	58193507	-	0	NA	"non-coding (NR_073102, exon 1 of 2)"	"non-coding (NR_073102, exon 1 of 2)"	-169	NM_138347	90233	Hs.109540	NM_001270938	ENSG00000204519	ZNF551	-	zinc finger protein 551	protein-coding
chr2.121554979.+	chr2	121554979	121554980	+	0	NA	"exon (NM_005270, exon 1 of 13)"	"exon (NM_005270, exon 1 of 13)"	112	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr1.158012596.+	chr1	158012596	158012597	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49533	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr4.100907292.+	chr4	100907292	100907293	+	0	NA	Intergenic	AluY|SINE|Alu	35656	NR_002799	256880	Hs.448554	NR_002799		LOC256880	-	uncharacterized LOC256880	miscRNA
chr17.78021101.-	chr17	78021101	78021102	-	0	NA	"exon (NM_001243342, exon 4 of 18)"	"exon (NM_001243342, exon 4 of 18)"	-10670	NM_017950	55036	Hs.202542	NM_001243342	ENSG00000141519	CCDC40	CILD15	coiled-coil domain containing 40	protein-coding
chr15.29130799.+	chr15	29130799	29130800	+	0	NA	Intergenic	CpG	-36978	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr8.76968569.+	chr8	76968569	76968570	+	0	NA	Intergenic	AluY|SINE|Alu	516366	NM_004133	3174	Hs.241529	NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	"hepatocyte nuclear factor 4, gamma"	protein-coding
chr7.1198833.-	chr7	1198833	1198834	-	0	NA	"intron (NM_182491, intron 1 of 4)"	L2a|LINE|L2	-1022	NM_182491	90637	Hs.648111	NM_182491	ENSG00000178381	ZFAND2A	AIRAP	"zinc finger, AN1-type domain 2A"	protein-coding
chr2.173941024.-	chr2	173941024	173941025	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-459	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr22.39540162.-	chr22	39540162	39540163	-	0	NA	"intron (NM_175709, intron 2 of 5)"	"intron (NM_175709, intron 2 of 5)"	-8376	NM_175709	23492	Hs.356416	NM_175709	ENSG00000100307	CBX7	-	chromobox homolog 7	protein-coding
chr15.89285108.-	chr15	89285108	89285109	-	0	NA	Intergenic	CpG	61566	NM_001135	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr18.63211127.-	chr18	63211127	63211128	-	0	NA	Intergenic	AluY|SINE|Alu	206361	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr9.132864557.-	chr9	132864557	132864558	-	0	NA	"intron (NM_020960, intron 12 of 17)"	"intron (NM_020960, intron 12 of 17)"	-48572	NM_020960	57720	Hs.512461	NM_001136557	ENSG00000148358	GPR107	GCDRP|LUSTR1|RP11-88G17|bA138E2.2	G protein-coupled receptor 107	protein-coding
chr9.120507354.+	chr9	120507354	120507355	+	0	NA	Intergenic	CpG	40901	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr13.24884229.+	chr13	24884229	24884230	+	0	NA	"intron (NM_178540, intron 1 of 3)"	AluSg7|SINE|Alu	513	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr3.192348604.+	chr3	192348604	192348605	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96784	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr4.8961352.-	chr4	8961352	8961353	-	0	NA	Intergenic	Intergenic	-9875	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr9.140057359.+	chr9	140057359	140057360	+	0	NA	"exon (NM_001185091, exon 16 of 20)"	"exon (NM_001185091, exon 16 of 20)"	6363	NR_037416	100500811		NR_037416		MIR3621	-	microRNA 3621	miscRNA
chr7.158240699.-	chr7	158240699	158240700	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-84806	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr10.118500968.-	chr10	118500968	118500969	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1117	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr11.108417664.-	chr11	108417664	108417665	-	0	NA	"intron (NM_015065, intron 1 of 5)"	AluSg|SINE|Alu	-46710	NM_015065	23086	Hs.28540	NM_001144763	ENSG00000110723	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
chr2.1563078.-	chr2	1563078	1563079	-	0	NA	Intergenic	Intergenic	-144898	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr20.60624017.+	chr20	60624017	60624018	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16849	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr9.140459805.+	chr9	140459805	140459806	+	0	NA	"intron (NM_138778, intron 5 of 8)"	"intron (NM_138778, intron 5 of 8)"	13496	NM_032477	64975	Hs.44017	NM_032477		MRPL41	BMRP|MRP-L27|MRPL27|RPML27	mitochondrial ribosomal protein L41	protein-coding
chr6.33519032.+	chr6	33519032	33519033	+	0	NA	Intergenic	AluSg|SINE|Alu	29038	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr20.35737815.-	chr20	35737815	35737816	-	0	NA	"intron (NM_152503, intron 21 of 23)"	AluSq10|SINE|Alu	13405	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding
chrX.47334403.+	chrX	47334403	47334404	+	0	NA	"intron (NM_153380, intron 1 of 4)"	AluYk12|SINE|Alu	7942	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr22.49181543.-	chr22	49181543	49181544	-	0	NA	Intergenic	AluSx1|SINE|Alu	-5436	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	miscRNA
chr7.139162655.+	chr7	139162655	139162656	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5802	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr2.10578240.+	chr2	10578240	10578241	+	0	NA	Intergenic	AluSz|SINE|Alu	8735	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	"small nucleolar RNA, H/ACA box 80B"	snoRNA
chr3.71376663.-	chr3	71376663	71376664	-	0	NA	"intron (NM_001012505, intron 4 of 6)"	AluY|SINE|Alu	22752	NM_001244812	27086	Hs.59368	NM_001012505	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
chr1.69778192.-	chr1	69778192	69778193	-	0	NA	Intergenic	L1PA8A|LINE|L1	447666	NM_020794	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
chr2.237068236.+	chr2	237068236	237068237	+	0	NA	Intergenic	CpG	8416	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.96931460.+	chr2	96931460	96931461	+	0	NA	promoter-TSS (NM_004804)	promoter-TSS (NM_004804)	291	NM_017849	55654	Hs.735706	NM_001193304	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
chr1.183670808.-	chr1	183670808	183670809	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48360	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr18.2377820.+	chr18	2377820	2377821	+	0	NA	Intergenic	AluSg7|SINE|Alu	193669	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr3.102973955.-	chr3	102973955	102973956	-	0	NA	Intergenic	SVA_D|Other|Other	-820096	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr22.39040992.-	chr22	39040992	39040993	-	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	-11642	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr9.85926191.-	chr9	85926191	85926192	-	0	NA	"intron (NM_001244959, intron 8 of 14)"	MLT1L|LTR|ERVL-MaLR	-20685	NM_001244961	257019	Hs.743606	NM_001244959	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
chr2.905783.-	chr2	905783	905784	-	0	NA	Intergenic	Intergenic	40771	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr6.42510205.-	chr6	42510205	42510206	-	0	NA	Intergenic	AluY|SINE|Alu	21555	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr2.3623321.+	chr2	3623321	3623322	+	0	NA	"intron (NM_001011, intron 2 of 6)"	CpG-14661	468	NM_001011	6201	Hs.646582	NM_001011	ENSG00000171863	RPS7	DBA8|S7	ribosomal protein S7	protein-coding
chr3.53080777.+	chr3	53080777	53080778	+	0	NA	promoter-TSS (NM_016329)	promoter-TSS (NM_016329)	-688	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr3.50701717.+	chr3	50701717	50701718	+	0	NA	Intergenic	AluY|SINE|Alu	-10794	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr13.45563812.+	chr13	45563812	45563813	+	0	NA	promoter-TSS (NM_012345)	promoter-TSS (NM_012345)	125	NM_018559	55425	Hs.744143	NM_018559	ENSG00000133114	KIAA1704	LSR7|RP11-245H20.2|bA245H20.2	KIAA1704	protein-coding
chr7.158462185.-	chr7	158462185	158462186	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35335	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chrM.885.-	chrM	885	886	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.106477572.-	chr12	106477572	106477573	-	0	NA	"intron (NM_014840, intron 4 of 6)"	"intron (NM_014840, intron 4 of 6)"	-56239	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr17.65335424.+	chr17	65335424	65335425	+	0	NA	Intergenic	AluSx|SINE|Alu	27297	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr20.47894559.+	chr20	47894559	47894560	+	0	NA	promoter-TSS (NR_036659)	promoter-TSS (NR_036659)	-156	NR_003606	441951	Hs.356766	NR_003604	ENSG00000177410	ZFAS1	C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1	ZNFX1 antisense RNA 1	miscRNA
chr12.29542560.+	chr12	29542560	29542561	+	0	NA	"non-coding (NR_073170, exon 1 of 3)"	"non-coding (NR_073170, exon 1 of 3)"	333	NR_073170	101055625	Hs.622902	NR_073170	ENSG00000257599	LOC101055625	-	uncharacterized LOC101055625	miscRNA
chr10.10840535.-	chr10	10840535	10840536	-	0	NA	Intergenic	Intergenic	3658	NR_027082	207107	Hs.31562	NR_027082		SFTA1P	SFTPF	"surfactant associated 1, pseudogene"	pseudo
chr22.45845281.-	chr22	45845281	45845282	-	0	NA	Intergenic	AluSz6|SINE|Alu	-35709	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11	RIB43A domain with coiled-coils 2	protein-coding
chr20.60623983.+	chr20	60623983	60623984	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16883	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr2.121244122.+	chr2	121244122	121244123	+	0	NA	Intergenic	Intergenic	-20197	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr17.79599632.-	chr17	79599632	79599633	-	0	NA	"intron (NM_017921, intron 1 of 16)"	AluSq2|SINE|Alu	-4506	NM_017921	55666	Hs.464333	NM_017921	ENSG00000182446	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
chr1.937274.-	chr1	937274	937275	-	0	NA	Intergenic	CpG-24	1722	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr10.134754230.+	chr10	134754230	134754231	+	0	NA	"intron (NM_001200049, intron 4 of 57)"	AluSx|SINE|Alu	1859	NM_001200049	54777	Hs.719815	NM_001200049	ENSG00000171811	TTC40	C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	tetratricopeptide repeat domain 40	protein-coding
chr17.76799757.-	chr17	76799757	76799758	-	0	NA	"exon (NM_025090, exon 16 of 20)"	"exon (NM_025090, exon 16 of 20)"	21381	NM_004762	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
chr4.39448482.+	chr4	39448482	39448483	+	0	NA	"exon (NM_175737, exon 4 of 5)"	"exon (NM_175737, exon 4 of 5)"	11725	NM_001024921	6133	Hs.741045	NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16	ribosomal protein L9	protein-coding
chr16.1820982.+	chr16	1820982	1820983	+	0	NA	TTS (NM_001040439)	TTS (NM_001040439)	728	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr7.1352002.+	chr7	1352002	1352003	+	0	NA	Intergenic	Intergenic	79348	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr3.38669102.-	chr3	38669102	38669103	-	0	NA	"intron (NM_000335, intron 3 of 27)"	AluSg7|SINE|Alu	-22061	NM_001099404	6331	Hs.517898	NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	"sodium channel, voltage-gated, type V, alpha subunit"	protein-coding
chr15.27067585.+	chr15	27067585	27067586	+	0	NA	Intergenic	AluY|SINE|Alu	-44281	NM_000810	2558	Hs.24969	NM_000810	ENSG00000186297	GABRA5	-	"gamma-aminobutyric acid (GABA) A receptor, alpha 5"	protein-coding
chr7.26294433.-	chr7	26294433	26294434	-	0	NA	Intergenic	AluSx1|SINE|Alu	37082	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr9.72433079.-	chr9	72433079	72433080	-	0	NA	Intergenic	AluY|SINE|Alu	-2576	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr10.70337089.+	chr10	70337089	70337090	+	0	NA	"intron (NM_030625, intron 2 of 11)"	AluSx|SINE|Alu	16972	NM_030625	80312	Hs.708977	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
chr7.21370291.-	chr7	21370291	21370292	-	0	NA	Intergenic	MER52D|LTR|ERV1	97398	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr17.78559369.+	chr17	78559369	78559370	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40744	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr22.51016323.+	chr22	51016323	51016324	+	0	NA	"exon (NM_001145137, exon 1 of 19)"	"exon (NM_001145137, exon 1 of 19)"	183	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr15.41729552.-	chr15	41729552	41729553	-	0	NA	"intron (NM_015138, intron 1 of 17)"	AluY|SINE|Alu	-20250	NM_015138	23168	Hs.511096	NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	"Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)"	protein-coding
chr1.228768436.+	chr1	228768436	228768437	+	0	NA	Intergenic	CpG	-11958	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr2.14112578.-	chr2	14112578	14112579	-	0	NA	Intergenic	AluY|SINE|Alu	660232	NM_145175	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	"family with sequence similarity 84, member A"	protein-coding
chr10.77986066.+	chr10	77986066	77986067	+	0	NA	"intron (NM_032024, intron 4 of 5)"	AluSq2|SINE|Alu	443547	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	-	chromosome 10 open reading frame 11	protein-coding
chrX.29649784.+	chrX	29649784	29649785	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-583891	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chrX.20694436.+	chrX	20694436	20694437	+	0	NA	Intergenic	AluY|SINE|Alu	-409686	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr9.36596632.-	chr9	36596632	36596633	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23773	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr4.116121643.-	chr4	116121643	116121644	-	0	NA	Intergenic	LTR12C|LTR|ERV1	86611	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	NDST-4|NHSST4	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4	protein-coding
chr11.63715954.+	chr11	63715954	63715955	+	0	NA	"intron (NM_024771, intron 3 of 7)"	AluY|SINE|Alu	9512	NM_024771	79829	Hs.523753	NM_024771	ENSG00000110583	NAA40	NAT11|PATT1	"N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)"	protein-coding
chr6.46742414.+	chr6	46742414	46742415	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18680	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr6.16831759.-	chr6	16831759	16831760	-	0	NA	Intergenic	AluY|SINE|Alu	70038	NM_000332	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
chr19.35225134.-	chr19	35225134	35225135	-	0	NA	promoter-TSS (NM_001029997)	promoter-TSS (NM_001029997)	346	NM_001029997	339318	Hs.720472	NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
chr10.132634683.-	chr10	132634683	132634684	-	0	NA	Intergenic	Intergenic	-126248	NR_036180	100422867		NR_036180	ENSG00000264803	MIR378C	-	microRNA 378c	miscRNA
chr4.17513806.+	chr4	17513806	17513807	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	51	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr2.230579333.-	chr2	230579333	230579334	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	47	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr6.43016764.+	chr6	43016764	43016765	+	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	4919	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr19.3220539.+	chr19	3220539	3220540	+	0	NA	Intergenic	AluSz|SINE|Alu	-4162	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr13.21644873.-	chr13	21644873	21644874	-	0	NA	Intergenic	AluSx|SINE|Alu	9151	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr19.49061673.+	chr19	49061673	49061674	+	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	6244	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr1.183670927.-	chr1	183670927	183670928	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48479	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr19.14544097.+	chr19	14544097	14544098	+	0	NA	promoter-TSS (NM_002741)	promoter-TSS (NM_002741)	-69	NM_002741	5585	Hs.466044	NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
chr4.185394530.-	chr4	185394530	185394531	-	0	NA	"intron (NM_002199, intron 1 of 8)"	CpG	-1196	NM_002199	3660	Hs.654566	NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
chr20.62060464.-	chr20	62060464	62060465	-	0	NA	"intron (NM_004518, intron 8 of 14)"	"intron (NM_004518, intron 8 of 14)"	-43529	NM_004518	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr5.171395354.+	chr5	171395354	171395355	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38523	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr3.129867999.-	chr3	129867999	129868000	-	0	NA	Intergenic	HERVE-int|LTR|ERV1	37723	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr3.48117751.-	chr3	48117751	48117752	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-13018	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr19.4158984.+	chr19	4158984	4158985	+	0	NA	"intron (NM_032607, intron 3 of 9)"	"intron (NM_032607, intron 3 of 9)"	5386	NM_032607	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr10.24476816.+	chr10	24476816	24476817	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20904	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr19.36983129.+	chr19	36983129	36983130	+	0	NA	Intergenic	AluSg|SINE|Alu	2600	NR_036504	728752	Hs.729762	NR_036504	ENSG00000267309	LOC728752	-	uncharacterized LOC728752	miscRNA
chr10.35559746.+	chr10	35559746	35559747	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23793	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr21.47343954.-	chr21	47343954	47343955	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57709	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr11.75479928.+	chr11	75479928	75479929	+	0	NA	promoter-TSS (NR_046090)	promoter-TSS (NR_046090)	150	NM_032564	84649	Hs.129798	NM_001253891	ENSG00000062282	DGAT2	ARAT|GS1999FULL	diacylglycerol O-acyltransferase 2	protein-coding
chr9.72433084.+	chr9	72433084	72433085	+	0	NA	Intergenic	AluY|SINE|Alu	2571	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr20.61885463.+	chr20	61885463	61885464	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	133	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chrX.39680389.-	chrX	39680389	39680390	-	0	NA	Intergenic	CpG	-276330	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.49061675.-	chr19	49061675	49061676	-	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	-6246	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr2.241363404.-	chr2	241363404	241363405	-	0	NA	Intergenic	Intergenic	11711	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr1.240947764.+	chr1	240947764	240947765	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172302	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr10.74085467.+	chr10	74085467	74085468	+	0	NA	Intergenic	Intergenic	29440	NM_001002762	54788	Hs.500013	NM_001002762	ENSG00000148719	DNAJB12	DJ10	"DnaJ (Hsp40) homolog, subfamily B, member 12"	protein-coding
chr17.37774505.-	chr17	37774505	37774506	-	0	NA	Intergenic	CpG	8672	NM_032192	84152	Hs.286192	NM_001242464	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	"protein phosphatase 1, regulatory (inhibitor) subunit 1B"	protein-coding
chr20.18441249.+	chr20	18441249	18441250	+	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	6580	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr16.67596900.+	chr16	67596900	67596901	+	0	NA	"intron (NM_006565, intron 1 of 11)"	CpG	590	NM_001191022	10664	Hs.368367	NM_001191022	ENSG00000102974	CTCF	-	CCCTC-binding factor (zinc finger protein)	protein-coding
chr2.237068284.-	chr2	237068284	237068285	-	0	NA	Intergenic	CpG	-8368	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr17.45349545.-	chr17	45349545	45349546	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18337	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr5.57859835.+	chr5	57859835	57859836	+	0	NA	Intergenic	SVA_A|Other|Other	-19104	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr19.7585470.-	chr19	7585470	7585471	-	0	NA	"exon (NM_018083, exon 2 of 2)"	"exon (NM_018083, exon 2 of 2)"	2026	NM_020533	57192	Hs.631858	NM_020533	ENSG00000090674	MCOLN1	MG-2|ML4|MLIV|MST080|TRP-ML1|TRPM-L1|TRPML1	mucolipin 1	protein-coding
chr1.5005160.+	chr1	5005160	5005161	+	0	NA	Intergenic	Intergenic	290055	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr14.20670535.+	chr14	20670535	20670536	+	0	NA	Intergenic	AluSq2|SINE|Alu	5040	NM_001005503	390439	Hs.554582	NM_001005503	ENSG00000196832	OR11G2	OR14-34	"olfactory receptor, family 11, subfamily G, member 2"	protein-coding
chr7.95234886.+	chr7	95234886	95234887	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8961	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr11.111190873.+	chr11	111190873	111190874	+	0	NA	Intergenic	AluYa5|SINE|Alu	-20334	NR_034154	399948	Hs.729225	NM_207429	ENSG00000196167	C11orf92	-	chromosome 11 open reading frame 92	miscRNA
chr19.15719735.+	chr19	15719735	15719736	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6294	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr2.100938785.-	chr2	100938785	100938786	-	0	NA	"5' UTR (NM_198461, exon 1 of 12)"	"5' UTR (NM_198461, exon 1 of 12)"	-410	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
chr2.20424065.+	chr2	20424065	20424066	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	862	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr12.43208401.+	chr12	43208401	43208402	+	0	NA	Intergenic	AluY|SINE|Alu	-224829	NM_153026	144165	Hs.720221	NM_001144881	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
chr16.89034189.+	chr16	89034189	89034190	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9315	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr9.137588936.-	chr9	137588936	137588937	-	0	NA	"intron (NM_000093, intron 2 of 65)"	"intron (NM_000093, intron 2 of 65)"	-55284	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chrX.31406405.+	chrX	31406405	31406406	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120010	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr14.20778832.+	chr14	20778832	20778833	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4679	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr20.4729595.+	chr20	4729595	4729596	+	0	NA	Intergenic	Intergenic	-8281	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr2.1896206.+	chr2	1896206	1896207	+	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	-147915	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr7.5125516.+	chr7	5125516	5125517	+	0	NA	Intergenic	AluY|SINE|Alu	13825	NR_015343	389458	Hs.733005	NM_203393		LOC389458	-	uncharacterized LOC389458	miscRNA
chr3.38106467.+	chr3	38106467	38106468	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25771	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr2.85830133.-	chr2	85830133	85830134	-	0	NA	promoter-TSS (NM_001031738)	promoter-TSS (NM_001031738)	-168	NR_046347	10713	Hs.654745	NM_001256725	ENSG00000168883	USP39	65K|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
chr20.53158269.-	chr20	53158269	53158270	-	0	NA	"intron (NM_018431, intron 1 of 7)"	AluSz|SINE|Alu	-66003	NM_018431	55816	Hs.656582	NM_018431	ENSG00000101134	DOK5	C20orf180	docking protein 5	protein-coding
chr17.66014514.+	chr17	66014514	66014515	+	0	NA	Intergenic	AluSx|SINE|Alu	-17334	NM_002266	3838	Hs.594238	NM_002266	ENSG00000182481	KPNA2	IPOA1|QIP2|RCH1|SRP1alpha	"karyopherin alpha 2 (RAG cohort 1, importin alpha 1)"	protein-coding
chr3.82554746.+	chr3	82554746	82554747	+	0	NA	Intergenic	MER52A|LTR|ERV1	-743796	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr1.218165399.-	chr1	218165399	218165400	-	0	NA	Intergenic	AluSq|SINE|Alu	-99157	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr3.48117748.+	chr3	48117748	48117749	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13021	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr9.8857423.-	chr9	8857423	8857424	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123477	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr5.176337816.+	chr5	176337816	176337817	+	0	NA	"intron (NM_001199297, intron 12 of 15)"	AluSp|SINE|Alu	-11483	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr4.190662159.+	chr4	190662159	190662160	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199815	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr7.36403826.-	chr7	36403826	36403827	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2956	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr19.693346.+	chr19	693346	693347	+	0	NA	"intron (NM_214710, intron 2 of 4)"	AluJb|SINE|Alu	2115	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chr7.5610930.-	chr7	5610930	5610931	-	0	NA	Intergenic	AluSx1|SINE|Alu	21506	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr7.821296.+	chr7	821296	821297	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33898	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr7.158165058.-	chr7	158165058	158165059	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-160447	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr9.100076985.+	chr9	100076985	100076986	+	0	NA	"exon (NM_020893, exon 7 of 37)"	"exon (NM_020893, exon 7 of 37)"	7075	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
chr7.5396348.+	chr7	5396348	5396349	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66829	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr10.74000511.+	chr10	74000511	74000512	+	0	NA	Intergenic	AluJr4|SINE|Alu	-23619	NR_045564	51008	Hs.500007	NM_001198798		ASCC1	ASC1p50|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
chr10.8534193.+	chr10	8534193	8534194	+	0	NA	Intergenic	AluY|SINE|Alu	437526	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr1.246788857.-	chr1	246788857	246788858	-	0	NA	"intron (NM_001139459, intron 3 of 8)"	AluSc|SINE|Alu	-59218	NM_152609	163882	Hs.368353	NM_001139459	ENSG00000162852	CNST	C1orf71|PPP1R64	"consortin, connexin sorting protein"	protein-coding
chr12.75694211.-	chr12	75694211	75694212	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29625	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr16.1838791.+	chr16	1838791	1838792	+	0	NA	"3' UTR (NM_012225, exon 7 of 7)"	"3' UTR (NM_012225, exon 7 of 7)"	4943	NM_004970	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr2.183551438.-	chr2	183551438	183551439	-	0	NA	Intergenic	L1PA5|LINE|L1	29330	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr14.22016188.-	chr14	22016188	22016189	-	0	NA	Intergenic	AluY|SINE|Alu	10851	NM_005407	6297	Hs.743336	NM_005407	ENSG00000165821	SALL2	HSAL2|Sal-2|ZNF795|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding
chr22.50655085.-	chr22	50655085	50655086	-	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	-15677	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr14.88199461.-	chr14	88199461	88199462	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260154	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr15.41687849.-	chr15	41687849	41687850	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6809	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr8.19626741.-	chr8	19626741	19626742	-	0	NA	Intergenic	AluSx1|SINE|Alu	48177	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr19.45660350.-	chr19	45660350	45660351	-	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	-3058	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr19.49611242.+	chr19	49611242	49611243	+	0	NA	"exon (NM_003089, exon 10 of 10)"	"exon (NM_003089, exon 10 of 10)"	-6376	NM_022165	64130	Hs.221737	NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B (C. elegans)	protein-coding
chr7.5703150.-	chr7	5703150	5703151	-	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	-16942	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr9.129414490.-	chr9	129414490	129414491	-	0	NA	"intron (NM_001174146, intron 2 of 7)"	"intron (NM_001174146, intron 2 of 7)"	-37768	NM_002316	4010	Hs.129133	NM_001174146	ENSG00000136944	LMX1B	LMX1.2|NPS1	"LIM homeobox transcription factor 1, beta"	protein-coding
chr22.49785339.-	chr22	49785339	49785340	-	0	NA	Intergenic	Intergenic	-265851	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr7.150147844.-	chr7	150147844	150147845	-	0	NA	promoter-TSS (NM_175571)	promoter-TSS (NM_175571)	118	NM_175571	155038	Hs.647121	NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IANT|hIAN6	"GTPase, IMAP family member 8"	protein-coding
chr19.56621537.+	chr19	56621537	56621538	+	0	NA	"intron (NM_001002836, intron 1 of 2)"	AluSg|SINE|Alu	11112	NM_001002836	126208	Hs.397153	NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
chr12.1044011.+	chr12	1044011	1044012	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14852	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr2.137180714.+	chr2	137180714	137180715	+	0	NA	Intergenic	AluSq2|SINE|Alu	-304989	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr8.11445714.+	chr8	11445714	11445715	+	0	NA	Intergenic	Intergenic	11670	NR_040035	83655	Hs.742430	NR_040035	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	miscRNA
chr2.120775614.+	chr2	120775614	120775615	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4829	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr14.106359666.-	chr14	106359666	106359667	-	0	NA	Intergenic	Intergenic	24172	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr9.138959023.-	chr9	138959023	138959024	-	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	-28108	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr12.2384429.+	chr12	2384429	2384430	+	0	NA	"intron (NR_046769, intron 1 of 2)"	"intron (NR_046769, intron 1 of 2)"	5487	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	miscRNA
chr11.130241848.-	chr11	130241848	130241849	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56691	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr13.114446703.+	chr13	114446703	114446704	+	0	NA	Intergenic	Intergenic	7359	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr11.134341996.-	chr11	134341996	134341997	-	0	NA	"intron (NR_033852, intron 3 of 5)"	"intron (NR_033852, intron 3 of 5)"	-35620	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr13.96681146.+	chr13	96681146	96681147	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24590	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr17.45349543.+	chr17	45349543	45349544	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18335	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr10.28821801.+	chr10	28821801	28821802	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	379	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr7.157387005.-	chr7	157387005	157387006	-	0	NA	"intron (NM_130842, intron 16 of 21)"	"intron (NM_130842, intron 16 of 21)"	19891	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr20.61436346.+	chr20	61436346	61436347	+	0	NA	"exon (NM_007346, exon 1 of 7)"	"exon (NM_007346, exon 1 of 7)"	169	NM_007346	11054	Hs.67896	NM_007346	ENSG00000060491	OGFR	-	opioid growth factor receptor	protein-coding
chr5.1067276.-	chr5	1067276	1067277	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4187	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr9.138476857.+	chr9	138476857	138476858	+	0	NA	"intron (NR_034017, intron 4 of 4)"	"intron (NR_034017, intron 4 of 4)"	10086	NR_034017	100130954	Hs.550769	NR_034016	ENSG00000237339	LOC100130954	-	uncharacterized LOC100130954	miscRNA
chr2.160569025.-	chr2	160569025	160569026	-	0	NA	promoter-TSS (NM_022826)	promoter-TSS (NM_022826)	-15	NM_022826	64844	Hs.529272	NM_022826	ENSG00000136536	Mar-07	AXO|AXOT|MARCH-VII|RNF177	"membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase"	protein-coding
chr15.75116014.-	chr15	75116014	75116015	-	0	NA	"exon (NM_021819, exon 12 of 14)"	"exon (NM_021819, exon 12 of 14)"	2937	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII	complexin 3	protein-coding
chr6.18239285.-	chr6	18239285	18239286	-	0	NA	"intron (NM_001134709, intron 6 of 9)"	AluSp|SINE|Alu	-25514	NM_003472	7913	Hs.484813	NM_001134709	ENSG00000124795	DEK	D6S231E	DEK oncogene	protein-coding
chr12.111884010.-	chr12	111884010	111884011	-	0	NA	"intron (NM_005475, intron 2 of 7)"	"intron (NM_005475, intron 2 of 7)"	-40258	NM_005475	10019	Hs.506784	NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
chr5.93974010.-	chr5	93974010	93974011	-	0	NA	"intron (NM_032290, intron 4 of 20)"	AluY|SINE|Alu	-19619	NM_032290	84250	Hs.657315	NM_032290		ANKRD32	BRCTD1|BRCTx	ankyrin repeat domain 32	protein-coding
chr8.67618018.-	chr8	67618018	67618019	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6635	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr11.64120584.-	chr11	64120584	64120585	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6041	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr22.38336383.-	chr22	38336383	38336384	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13271	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr16.22675484.-	chr16	22675484	22675485	-	0	NA	Intergenic	AluJr|SINE|Alu	54119	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr3.1144614.+	chr3	1144614	1144615	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9985	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr11.638955.+	chr11	638955	638956	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1650	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr1.92407870.+	chr1	92407870	92407871	+	0	NA	Intergenic	AluY|SINE|Alu	-7058	NM_207189	676	Hs.482520	NM_001242805	ENSG00000137948	BRDT	BRD6|CT9	"bromodomain, testis-specific"	protein-coding
chr7.2631662.-	chr7	2631662	2631663	-	0	NA	"intron (NM_152558, intron 14 of 21)"	AluYc|SINE|Alu	-33030	NM_001100390	23288	Hs.520627	NM_001100390	ENSG00000106012	IQCE	1700028P05Rik	IQ motif containing E	protein-coding
chr12.49479728.+	chr12	49479728	49479729	+	0	NA	Intergenic	AluSq|SINE|Alu	8874	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chrX.90204092.+	chrX	90204092	90204093	+	0	NA	Intergenic	AluY|SINE|Alu	-485505	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr8.23131161.-	chr8	23131161	23131162	-	0	NA	Intergenic	AluSc8|SINE|Alu	14451	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr2.162165137.+	chr2	162165137	162165138	+	0	NA	"intron (NM_005805, intron 1 of 11)"	CpG	351	NM_005805	10213	Hs.740477	NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 14"	protein-coding
chr22.50959121.-	chr22	50959121	50959122	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4912	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr19.47776587.+	chr19	47776587	47776588	+	0	NA	Intergenic	CpG	-1072	NR_037675	255783	Hs.128690	NM_178511	ENSG00000257704	PRR24	-	proline rich 24	protein-coding
chr12.100804237.+	chr12	100804237	100804238	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53380	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr8.1771623.-	chr8	1771623	1771624	-	0	NA	promoter-TSS (NM_014629)	promoter-TSS (NM_014629)	526	NM_014629	9639	Hs.98594	NM_014629	ENSG00000104728	ARHGEF10	GEF10	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding
chr1.221053004.+	chr1	221053004	221053005	+	0	NA	"5' UTR (NM_021958, exon 1 of 4)"	"5' UTR (NM_021958, exon 1 of 4)"	261	NM_021958	3142	Hs.74870	NM_021958		HLX	HB24|HLX1	H2.0-like homeobox	protein-coding
chr9.88491254.-	chr9	88491254	88491255	-	0	NA	Intergenic	AluYc|SINE|Alu	64803	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr10.133842656.+	chr10	133842656	133842657	+	0	NA	Intergenic	SVA_F|Other|Other	-47221	NM_004052	664	Hs.144873	NM_004052		BNIP3	NIP3	BCL2/adenovirus E1B 19kDa interacting protein 3	protein-coding
chr8.54998373.-	chr8	54998373	54998374	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16204	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr2.101924966.+	chr2	101924966	101924967	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	212	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr1.110881124.-	chr1	110881124	110881125	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-669	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr11.73641100.-	chr11	73641100	73641101	-	0	NA	Intergenic	AluSp|SINE|Alu	20264	NM_153614	374407	Hs.567888	NM_153614	ENSG00000187726	DNAJB13	RSPH16A|TSARG5|TSARG6	"DnaJ (Hsp40) homolog, subfamily B, member 13"	protein-coding
chr16.544878.-	chr16	544878	544879	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20028	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr10.86331302.+	chr10	86331302	86331303	+	0	NA	Intergenic	LTR12C|LTR|ERV1	242892	NM_018999	54462	Hs.461988	NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
chr9.137200938.-	chr9	137200938	137200939	-	0	NA	Intergenic	Intergenic	17378	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr1.218195610.+	chr1	218195610	218195611	+	0	NA	Intergenic	AluY|SINE|Alu	129368	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr2.174205898.+	chr2	174205898	174205899	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13663	NM_031942	83879	Hs.470654	NM_031942	ENSG00000144354	CDCA7	JPO1	cell division cycle associated 7	protein-coding
chr20.48703467.-	chr20	48703467	48703468	-	0	NA	"intron (NM_022442, intron 2 of 3)"	AluY|SINE|Alu	-26268	NM_001257399	7335	Hs.420529	NM_001032288	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
chr20.33062710.+	chr20	33062710	33062711	+	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	8580	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr19.14508395.-	chr19	14508395	14508396	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16439	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr6.80035337.+	chr6	80035337	80035338	+	0	NA	Intergenic	L1PA4|LINE|L1	-90882	NM_004242	9324	Hs.77558	NM_001201362	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chr6.64324455.-	chr6	64324455	64324456	-	0	NA	Intergenic	AluSp|SINE|Alu	31976	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
chr10.123791044.+	chr10	123791044	123791045	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42355	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr14.105242417.+	chr14	105242417	105242418	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17521	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr5.675430.+	chr5	675430	675431	+	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	18080	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr1.39450163.+	chr1	39450163	39450164	+	0	NA	Intergenic	AluY|SINE|Alu	-6753	NM_024595	79647	Hs.293563	NM_001136275	ENSG00000174574	AKIRIN1	C1orf108|RP11-781D11.2|STRF2	akirin 1	protein-coding
chr2.234263413.-	chr2	234263413	234263414	-	0	NA	"intron (NM_152879, intron 1 of 29)"	C-rich|Low_complexity|Low_complexity	-260	NM_152879	8527	Hs.471675	NM_003648	ENSG00000077044	DGKD	DGKdelta|dgkd-2	"diacylglycerol kinase, delta 130kDa"	protein-coding
chr3.136117010.-	chr3	136117010	136117011	-	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	-147843	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr5.3188270.+	chr5	3188270	3188271	+	0	NA	Intergenic	CpG	347938	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr9.8858133.+	chr9	8858133	8858134	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124187	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.230579347.-	chr2	230579347	230579348	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	61	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr8.27127623.+	chr8	27127623	27127624	+	0	NA	Intergenic	AluY|SINE|Alu	-11720	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr6.150413235.-	chr6	150413235	150413236	-	0	NA	Intergenic	AluY|SINE|Alu	23033	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr9.83464.-	chr9	83464	83465	-	0	NA	Intergenic	SVA_E|Other|Other	-34953	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr15.83666576.-	chr15	83666576	83666577	-	0	NA	"intron (NM_001160115, intron 3 of 4)"	SVA_F|Other|Other	-11621	NM_031452	83640	Hs.744202	NM_031452	ENSG00000169612	FAM103A1	C15orf18|HsT19360|RAM	"family with sequence similarity 103, member A1"	protein-coding
chr15.64013616.+	chr15	64013616	64013617	+	0	NA	"intron (NM_003922, intron 19 of 77)"	AluSx|SINE|Alu	112531	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
chr3.29288076.-	chr3	29288076	29288077	-	0	NA	Intergenic	AluY|SINE|Alu	34727	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr16.10077499.-	chr16	10077499	10077500	-	0	NA	"intron (NM_001134408, intron 2 of 13)"	AluY|SINE|Alu	-198425	NM_001134408	2903	Hs.411472	NM_000833	ENSG00000183454	GRIN2A	EPND|GluN2A|NMDAR2A|NR2A	"glutamate receptor, ionotropic, N-methyl D-aspartate 2A"	protein-coding
chr3.31573987.+	chr3	31573987	31573988	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-504	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chrX.15026746.+	chrX	15026746	15026747	+	0	NA	Intergenic	AluY|SINE|Alu	123333	NM_001177475	158747	Hs.190043	NM_001177475		MOSPD2	-	motile sperm domain containing 2	protein-coding
chr8.60674708.-	chr8	60674708	60674709	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519246	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr2.38870502.-	chr2	38870502	38870503	-	0	NA	Intergenic	LTR12C|LTR|ERV1	22550	NM_138801	130589	Hs.435012	NM_138801	ENSG00000143891	GALM	IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
chr13.66584760.+	chr13	66584760	66584761	+	0	NA	Intergenic	AluY|SINE|Alu	-814541	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr16.586240.-	chr16	586240	586241	-	0	NA	TTS (NR_049852)	TTS (NR_049852)	-924	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	miscRNA
chr11.12841283.+	chr11	12841283	12841284	+	0	NA	"intron (NM_021961, intron 3 of 12)"	AluY|SINE|Alu	145314	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chr5.177735967.+	chr5	177735967	177735968	+	0	NA	"intron (NM_173465, intron 2 of 28)"	"intron (NM_173465, intron 2 of 28)"	-76164	NM_153373	85007	Hs.248746	NM_032921	ENSG00000175309	AGXT2L2	PHLU	alanine-glyoxylate aminotransferase 2-like 2	protein-coding
chr15.91415334.+	chr15	91415334	91415335	+	0	NA	"intron (NM_002569, intron 1 of 15)"	CpG	3449	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr2.202898647.-	chr2	202898647	202898648	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	663	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr19.33794744.+	chr19	33794744	33794745	+	0	NA	"non-coding (NR_026887, exon 1 of 1)"	"non-coding (NR_026887, exon 1 of 1)"	981	NR_026887	80054	Hs.287521	NM_024988		CEBPA-AS1	-	CEBPA antisense RNA 1 (head to head)	miscRNA
chr1.101786829.-	chr1	101786829	101786830	-	0	NA	Intergenic	AluY|SINE|Alu	-19622	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr12.62499878.-	chr12	62499878	62499879	-	0	NA	"intron (NM_178539, intron 1 of 4)"	AluSx1|SINE|Alu	-86742	NM_178539	338811	Hs.604626	NM_178539	ENSG00000198673	FAM19A2	TAFA-2|TAFA2	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A2"	protein-coding
chr13.19728184.-	chr13	19728184	19728185	-	0	NA	Intergenic	Intergenic	-11062	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr8.144620854.+	chr8	144620854	144620855	+	0	NA	"exon (NM_015117, exon 2 of 12)"	"exon (NM_015117, exon 2 of 12)"	2766	NM_015117	23144	Hs.521915	NM_015117	ENSG00000014164	ZC3H3	ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
chrX.40029654.-	chrX	40029654	40029655	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6928	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr1.94375291.+	chr1	94375291	94375292	+	0	NA	promoter-TSS (NM_002061)	promoter-TSS (NM_002061)	-279	NM_002061	2730	Hs.315562	NM_002061		GCLM	GLCLR	"glutamate-cysteine ligase, modifier subunit"	protein-coding
chr1.40330205.+	chr1	40330205	40330206	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18972	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr12.112407405.-	chr12	112407405	112407406	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43618	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr2.35037505.+	chr2	35037505	35037506	+	0	NA	Intergenic	AluY|SINE|Alu	-1084221	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr13.51885852.-	chr13	51885852	51885853	-	0	NA	Intergenic	AluSx|SINE|Alu	29316	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr2.191273298.-	chr2	191273298	191273299	-	0	NA	"intron (NM_017694, intron 1 of 7)"	CpG	-217	NM_017694	54842	Hs.744117	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
chr5.1408104.+	chr5	1408104	1408105	+	0	NA	"intron (NM_001044, intron 11 of 14)"	"intron (NM_001044, intron 11 of 14)"	37439	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr2.241705132.+	chr2	241705132	241705133	+	0	NA	"exon (NM_004321, exon 18 of 46)"	"exon (NM_004321, exon 18 of 46)"	32097	NM_004321	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr19.4911835.+	chr19	4911835	4911836	+	0	NA	"intron (NM_001048201, intron 2 of 16)"	"intron (NM_001048201, intron 2 of 16)"	1269	NM_013282	29128	Hs.108106	NM_001048201		UHRF1	ICBP90|Np95|RNF106|hNP95|hUHRF1	ubiquitin-like with PHD and ring finger domains 1	protein-coding
chr2.240402073.+	chr2	240402073	240402074	+	0	NA	Intergenic	Intergenic	-79430	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr5.167671794.-	chr5	167671794	167671795	-	0	NA	"intron (NM_001122679, intron 26 of 28)"	AluSx|SINE|Alu	47271	NM_001161662	23286	Hs.484047	NM_001161661	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA	WW and C2 domain containing 1	protein-coding
chr16.22943689.+	chr16	22943689	22943690	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	117829	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr12.85283158.+	chr12	85283158	85283159	+	0	NA	"intron (NM_001146335, intron 1 of 10)"	AluY|SINE|Alu	23450	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr11.7603338.-	chr11	7603338	7603339	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15079	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr19.11104355.-	chr19	11104355	11104356	-	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	-9527	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr14.44126252.+	chr14	44126252	44126253	+	0	NA	Intergenic	AluSc|SINE|Alu	850247	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chrX.58299302.+	chrX	58299302	58299303	+	0	NA	Intergenic	GSATX|Satellite|centr	-362235	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	"zinc finger, X-linked, duplicated A"	protein-coding
chr7.5355884.-	chr7	5355884	5355885	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33323	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chrX.25031258.-	chrX	25031258	25031259	-	0	NA	"exon (NM_139058, exon 2 of 5)"	"exon (NM_139058, exon 2 of 5)"	-2807	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
chr2.203100554.-	chr2	203100554	203100555	-	0	NA	"intron (NM_003352, intron 1 of 4)"	AluSg|SINE|Alu	-2768	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr16.68233557.-	chr16	68233557	68233558	-	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	-36579	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr2.240383505.-	chr2	240383505	240383506	-	0	NA	Intergenic	Intergenic	60862	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr2.166334110.+	chr2	166334110	166334111	+	0	NA	"intron (NM_001172173, intron 1 of 6)"	AluSx|SINE|Alu	7953	NM_001172173	80034	Hs.470479	NM_001172173	ENSG00000178662	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine-serine-rich nuclear protein 3	protein-coding
chrX.48419176.+	chrX	48419176	48419177	+	0	NA	"exon (NM_002536, exon 6 of 6)"	"exon (NM_002536, exon 6 of 6)"	-13565	NM_006743	5935	Hs.301404	NM_006743		RBM3	IS1-RNPL|RNPL	"RNA binding motif (RNP1, RRM) protein 3"	protein-coding
chr4.40571722.+	chr4	40571722	40571723	+	0	NA	"intron (NM_001098634, intron 1 of 6)"	AluY|SINE|Alu	-53732	NM_019027	54502	Hs.518727	NM_001098634	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
chr1.40330246.-	chr1	40330246	40330247	-	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	-18931	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr17.41049378.+	chr17	41049378	41049379	+	0	NA	"intron (NR_027254, intron 1 of 5)"	AluSx1|SINE|Alu	1373	NR_027254	388387	Hs.632257	NM_207388	ENSG00000213373	LINC00671	-	long intergenic non-protein coding RNA 671	miscRNA
chr6.142795182.-	chr6	142795182	142795183	-	0	NA	Intergenic	AluSc|SINE|Alu	-163791	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr2.71562028.-	chr2	71562028	71562029	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3143	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr7.2944152.-	chr7	2944152	2944153	-	0	NA	Intergenic	Intergenic	60193	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr2.233477527.+	chr2	233477527	233477528	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6760	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr2.128965899.+	chr2	128965899	128965900	+	0	NA	Intergenic	SVA_F|Other|Other	110272	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chrX.141491524.-	chrX	141491524	141491525	-	0	NA	Intergenic	AluY|SINE|Alu	198448	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr12.118663793.+	chr12	118663793	118663794	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89923	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chrX.129097428.+	chrX	129097428	129097429	+	0	NA	Intergenic	Intergenic	-41736	NM_021946	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
chr5.91967068.-	chr5	91967068	91967069	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-939431	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr8.67454356.-	chr8	67454356	67454357	-	0	NA	Intergenic	Intergenic	-48865	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr5.15500190.+	chr5	15500190	15500191	+	0	NA	promoter-TSS (NM_012304)	promoter-TSS (NM_012304)	-115	NM_012304	23194	Hs.433057	NM_012304	ENSG00000183580	FBXL7	FBL6|FBL7	F-box and leucine-rich repeat protein 7	protein-coding
chr21.45566111.+	chr21	45566111	45566112	+	0	NA	TTS (NM_198155)	TTS (NM_198155)	12617	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chrX.100277470.+	chrX	100277470	100277471	+	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	29635	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr17.18785151.+	chr17	18785151	18785152	+	0	NA	"intron (NM_002767, intron 6 of 11)"	"intron (NM_002767, intron 6 of 11)"	16369	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr10.59351201.+	chr10	59351201	59351202	+	0	NA	Intergenic	AluY|SINE|Alu	-286882	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr12.38493570.+	chr12	38493570	38493571	+	0	NA	Intergenic	Intergenic	-216987	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr6.170605168.-	chr6	170605168	170605169	-	0	NA	Intergenic	CpG	5471	NM_005618	28514	Hs.379912	NM_005618	ENSG00000198719	DLL1	DELTA1|DL1|Delta	delta-like 1 (Drosophila)	protein-coding
chr8.98771874.+	chr8	98771874	98771875	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15935	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr8.56758291.-	chr8	56758291	56758292	-	0	NA	Intergenic	AluSx3|SINE|Alu	34095	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chrX.86721036.-	chrX	86721036	86721037	-	0	NA	Intergenic	SVA_C|Other|Other	51679	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr5.3764225.+	chr5	3764225	3764226	+	0	NA	Intergenic	Intergenic	168057	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr9.133922891.+	chr9	133922891	133922892	+	0	NA	"intron (NM_006059, intron 8 of 27)"	Charlie1b|DNA|hAT-Charlie	38387	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	"laminin, gamma 3"	protein-coding
chrX.12171161.+	chrX	12171161	12171162	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14576	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chr2.39267441.+	chr2	39267441	39267442	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79956	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr11.64107756.+	chr11	64107756	64107757	+	0	NA	promoter-TSS (NM_032251)	promoter-TSS (NM_032251)	66	NM_032251	283234	Hs.98564	NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
chr9.133788051.+	chr9	133788051	133788052	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18826	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr6.6004296.+	chr6	6004296	6004297	+	0	NA	"intron (NM_016588, intron 1 of 2)"	CpG-21667	3337	NM_016588	51299	Hs.103291	NM_016588		NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
chr22.26176055.+	chr22	26176055	26176056	+	0	NA	"exon (NM_032608, exon 9 of 44)"	"exon (NM_032608, exon 9 of 44)"	37935	NM_032608	84700	Hs.417959	NM_032608	ENSG00000133454	MYO18B	-	myosin XVIIIB	protein-coding
chr2.168780260.+	chr2	168780260	168780261	+	0	NA	Intergenic	AluY|SINE|Alu	105078	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	"UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1"	protein-coding
chr5.2391231.-	chr5	2391231	2391232	-	0	NA	Intergenic	Intergenic	-360538	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr11.31560856.+	chr11	31560856	31560857	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29559	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr12.107725298.+	chr12	107725298	107725299	+	0	NA	"intron (NM_001018072, intron 1 of 16)"	"intron (NM_001018072, intron 1 of 16)"	13101	NM_001018072	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	-	BTB (POZ) domain containing 11	protein-coding
chr10.102037184.-	chr10	102037184	102037185	-	0	NA	"intron (NM_173809, intron 4 of 4)"	SVA_D|Other|Other	-8932	NR_046296	282991	Hs.34906	NM_001001342		BLOC1S2	BLOS2|RP11-316M21.4	"biogenesis of lysosomal organelles complex-1, subunit 2"	protein-coding
chr5.128197005.+	chr5	128197005	128197006	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104205	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr20.35167604.-	chr20	35167604	35167605	-	0	NA	Intergenic	AluY|SINE|Alu	2283	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chrX.112142822.-	chrX	112142822	112142823	-	0	NA	Intergenic	AluY|SINE|Alu	58779	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr13.92578381.-	chr13	92578381	92578382	-	0	NA	"intron (NM_004466, intron 6 of 7)"	AluSc8|SINE|Alu	-527446	NM_004466	2262	Hs.655675	NM_004466	ENSG00000179399	GPC5	-	glypican 5	protein-coding
chrX.70493514.-	chrX	70493514	70493515	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9528	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr17.57409161.-	chr17	57409161	57409162	-	0	NA	"5' UTR (NM_001005404, exon 1 of 5)"	"5' UTR (NM_001005404, exon 1 of 5)"	-108	NM_001005404	388403	Hs.463613	NM_001005404	ENSG00000175155	YPEL2	-	yippee-like 2 (Drosophila)	protein-coding
chr7.56109519.-	chr7	56109519	56109520	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9749	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr19.4428824.-	chr19	4428824	4428825	-	0	NA	"exon (NM_005483, exon 8 of 15)"	"exon (NM_005483, exon 8 of 15)"	17151	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	-	microRNA 4746	miscRNA
chr1.113544070.+	chr1	113544070	113544071	+	0	NA	Intergenic	AluY|SINE|Alu	-45095	NM_003051	6566	Hs.75231	NM_001166496	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1	"solute carrier family 16, member 1 (monocarboxylic acid transporter 1)"	protein-coding
chr7.4828910.-	chr7	4828910	4828911	-	0	NA	promoter-TSS (NR_039800)	promoter-TSS (NR_039800)	640	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	miscRNA
chr20.62186511.+	chr20	62186511	62186512	+	0	NA	"intron (NM_024059, intron 1 of 1)"	"intron (NM_024059, intron 1 of 1)"	2138	NM_024059	79025	Hs.197755	NM_024059	ENSG00000125531	C20orf195	-	chromosome 20 open reading frame 195	protein-coding
chr19.53979663.-	chr19	53979663	53979664	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8674	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr15.66586080.-	chr15	66586080	66586081	-	0	NA	"intron (NM_001143688, intron 1 of 16)"	CpG	-160	NM_001143688	115752	Hs.446251	NM_001143688	ENSG00000166938	DIS3L	DIS3L1	DIS3 mitotic control homolog (S. cerevisiae)-like	protein-coding
chr4.185174126.+	chr4	185174126	185174127	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35012	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr8.38758793.+	chr8	38758793	38758794	+	0	NA	promoter-TSS (NM_021623)	promoter-TSS (NM_021623)	40	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	"pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2"	protein-coding
chr14.102026874.-	chr14	102026874	102026875	-	0	NA	promoter-TSS (NM_001362)	promoter-TSS (NM_001362)	115	NR_031649	100302145		NR_031649	ENSG00000221133	MIR1247	MIRN1247|hsa-mir-1247	microRNA 1247	miscRNA
chr20.5616786.+	chr20	5616786	5616787	+	0	NA	Intergenic	MER41A|LTR|ERV1	-25114	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	protein-coding
chr2.74880320.-	chr2	74880320	74880321	-	0	NA	Intergenic	AluYg6|SINE|Alu	1035	NM_004263	10505	Hs.25887	NM_001271661	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F"	protein-coding
chr5.92916151.+	chr5	92916151	92916152	+	0	NA	"intron (NR_021491, intron 1 of 5)"	CpG	802	NR_021491	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr16.89719745.+	chr16	89719745	89719746	+	0	NA	"intron (NM_001083314, intron 1 of 5)"	"intron (NM_001083314, intron 1 of 5)"	-4407	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr14.34924160.-	chr14	34924160	34924161	-	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	-7308	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr2.107084288.-	chr2	107084288	107084289	-	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	-513	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chr21.45566089.+	chr21	45566089	45566090	+	0	NA	TTS (NM_198155)	TTS (NM_198155)	12595	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr17.67192574.+	chr17	67192574	67192575	+	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	48382	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chr13.32980238.-	chr13	32980238	32980239	-	0	NA	"intron (NM_052818, intron 3 of 4)"	AluY|SINE|Alu	-22077	NM_052818	90634	Hs.732118	NM_001079691	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
chr12.107112637.-	chr12	107112637	107112638	-	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	34159	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr16.81282932.+	chr16	81282932	81282933	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10636	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr7.36403672.-	chr7	36403672	36403673	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	"intron (NM_001100425, intron 2 of 6)"	-3110	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr20.58180104.-	chr20	58180104	58180105	-	0	NA	"exon (NM_080672, exon 1 of 13)"	"exon (NM_080672, exon 1 of 13)"	-501	NM_080672	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr11.1122320.+	chr11	1122320	1122321	+	0	NA	Intergenic	Intergenic	47445	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chrX.153095461.-	chrX	153095461	153095462	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-542	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr1.12040460.+	chr1	12040460	12040461	+	0	NA	"5' UTR (NM_014874, exon 1 of 19)"	"5' UTR (NM_014874, exon 1 of 19)"	222	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr19.36578411.-	chr19	36578411	36578412	-	0	NA	"intron (NM_173636, intron 13 of 31)"	AluSx3|SINE|Alu	23694	NM_001270948	728361	Hs.143920	NM_001270948		OVOL3	-	ovo-like 3 (Drosophila)	protein-coding
chr16.84871524.+	chr16	84871524	84871525	+	0	NA	"intron (NM_031476, intron 1 of 14)"	"intron (NM_031476, intron 1 of 14)"	17937	NM_031476	83716	Hs.617091	NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
chr11.507441.+	chr11	507441	507442	+	0	NA	promoter-TSS (NM_002939)	promoter-TSS (NM_002939)	-158	NM_203387	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
chr5.14460454.+	chr5	14460454	14460455	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121437	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr4.17513840.+	chr4	17513840	17513841	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	17	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr6.170547851.-	chr6	170547851	170547852	-	0	NA	Intergenic	L2b|LINE|L2	-23806	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr10.126432948.-	chr10	126432948	126432949	-	0	NA	promoter-TSS (NM_014661)	promoter-TSS (NM_014661)	18	NM_014661	9679	Hs.129195	NM_014661	ENSG00000189319	FAM53B	KIAA0140|RP11-12J10.2|bA12J10.2	"family with sequence similarity 53, member B"	protein-coding
chr22.38336408.+	chr22	38336408	38336409	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13246	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr3.49297106.+	chr3	49297106	49297107	+	0	NA	Intergenic	AluY|SINE|Alu	-14447	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	miscRNA
chr19.18180413.+	chr19	18180413	18180414	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17284	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr2.109090591.-	chr2	109090591	109090592	-	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	-25014	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr3.102973879.-	chr3	102973879	102973880	-	0	NA	Intergenic	SVA_D|Other|Other	-820020	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr1.97799162.+	chr1	97799162	97799163	+	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	237683	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr14.34667851.+	chr14	34667851	34667852	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247567	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr1.12090087.-	chr1	12090087	12090088	-	0	NA	"exon (NM_021933, exon 8 of 10)"	"exon (NM_021933, exon 8 of 10)"	-10788	NM_021933	60672	Hs.8595	NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
chr12.52243301.+	chr12	52243301	52243302	+	0	NA	Intergenic	Intergenic	-17600	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
chr8.146017406.+	chr8	146017406	146017407	+	0	NA	"exon (NM_000973, exon 2 of 6)"	"exon (NM_000973, exon 2 of 6)"	323	NM_033301	6132	Hs.178551	NM_000973	ENSG00000161016	RPL8	L8	ribosomal protein L8	protein-coding
chr15.76627281.+	chr15	76627281	76627282	+	0	NA	Intergenic	AluSg|SINE|Alu	-1866	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr8.87520713.+	chr8	87520713	87520714	+	0	NA	"intron (NM_016033, intron 1 of 9)"	CpG	296	NM_016033	51115	Hs.145386	NM_016033	ENSG00000176623	RMDN1	FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
chr15.29130784.+	chr15	29130784	29130785	+	0	NA	Intergenic	CpG	-36963	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr7.100044661.+	chr7	100044661	100044662	+	0	NA	Intergenic	AluY|SINE|Alu	-10567	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr17.2909028.-	chr17	2909028	2909029	-	0	NA	"intron (NM_015085, intron 15 of 24)"	"intron (NM_015085, intron 15 of 24)"	-57873	NM_014566	8386	Hs.553508	NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31	"olfactory receptor, family 1, subfamily D, member 5"	protein-coding
chr7.156750233.+	chr7	156750233	156750234	+	0	NA	"intron (NM_138400, intron 3 of 10)"	AluY|SINE|Alu	7816	NM_138400	64434	Hs.15825	NM_138400	ENSG00000146909	NOM1	C7orf3|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
chr19.46786049.-	chr19	46786049	46786050	-	0	NA	"intron (NR_046936, intron 3 of 3)"	AluSx1|SINE|Alu	14254	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	"hypoxia inducible factor 3, alpha subunit"	protein-coding
chr19.23432227.-	chr19	23432227	23432228	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-945	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chrX.80075994.+	chrX	80075994	80075995	+	0	NA	Intergenic	Intergenic	-10761	NM_153252	254065	Hs.613180	NM_153252	ENSG00000165288	BRWD3	BRODL|MRX93	bromodomain and WD repeat domain containing 3	protein-coding
chr6.165122642.+	chr6	165122642	165122643	+	0	NA	Intergenic	Intergenic	600469	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr9.137240511.+	chr9	137240511	137240512	+	0	NA	"intron (NM_002957, intron 1 of 9)"	"intron (NM_002957, intron 1 of 9)"	22195	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr16.1303087.+	chr16	1303087	1303088	+	0	NA	Intergenic	AluSq10|SINE|Alu	-3186	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr15.89714215.-	chr15	89714215	89714216	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50707	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr2.241581955.-	chr2	241581955	241581956	-	0	NA	Intergenic	Intergenic	-17293	NM_005301	2859	Hs.112218	NM_001195381	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
chr18.2906149.-	chr18	2906149	2906150	-	0	NA	"intron (NM_032048, intron 4 of 7)"	CpG	-40472	NR_026659	727896	Hs.673126	NR_026659		LOC727896	-	cysteine and histidine-rich domain (CHORD) containing 1 pseudogene	pseudo
chrX.144902934.-	chrX	144902934	144902935	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-68	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr17.1165723.+	chr17	1165723	1165724	+	0	NA	Intergenic	AluSg|SINE|Alu	-8135	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr17.4708674.+	chr17	4708674	4708675	+	0	NA	Intergenic	AluSp|SINE|Alu	-1722	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr9.39055113.+	chr9	39055113	39055114	+	0	NA	Intergenic	AluY|SINE|Alu	233187	NM_033655	79937	Hs.604441	NM_033655	ENSG00000106714	CNTNAP3	CASPR3|CNTNAP3A|RP11-138L21.1|RP11-290L7.1	contactin associated protein-like 3	protein-coding
chr4.7751188.-	chr4	7751188	7751189	-	0	NA	Intergenic	AluY|SINE|Alu	4629	NR_026892	84740	Hs.663029	NM_032654		AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	miscRNA
chr14.100680711.+	chr14	100680711	100680712	+	0	NA	Intergenic	CpG	-24391	NM_003403	7528	Hs.603118	NM_003403		YY1	DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
chr14.103236978.-	chr14	103236978	103236979	-	0	NA	Intergenic	L2c|LINE|L2	6838	NM_001199427	7187	Hs.510528	NM_001199427	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor-associated factor 3	protein-coding
chr22.38008296.+	chr22	38008296	38008297	+	0	NA	"intron (NM_001172688, intron 1 of 17)"	AluY|SINE|Alu	3249	NM_001172688	26088	Hs.499158	NM_001001560	ENSG00000100083	GGA1	-	"golgi-associated, gamma adaptin ear containing, ARF binding protein 1"	protein-coding
chr21.11107116.-	chr21	11107116	11107117	-	0	NA	Intergenic	CpG	8179	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr2.202092442.-	chr2	202092442	202092443	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5724	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr5.79863374.-	chr5	79863374	79863375	-	0	NA	"intron (NM_001004441, intron 2 of 4)"	AluSq|SINE|Alu	-2930	NM_001004441	340120	Hs.519404	NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
chr12.34492664.-	chr12	34492664	34492665	-	0	NA	Intergenic	GSATII|Satellite|centr	-317448	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr20.4729591.+	chr20	4729591	4729592	+	0	NA	Intergenic	Intergenic	-8277	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr19.586943.+	chr19	586943	586944	+	0	NA	Intergenic	L2b|LINE|L2	-2950	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr2.217746799.+	chr2	217746799	217746800	+	0	NA	Intergenic	AluSz|SINE|Alu	-22017	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr8.75778856.-	chr8	75778856	75778857	-	0	NA	Intergenic	L1PA2|LINE|L1	-42084	NM_015886	51050	Hs.98558	NM_015886	ENSG00000137558	PI15	CRISP8|P24TI|P25TI	peptidase inhibitor 15	protein-coding
chr9.138663334.-	chr9	138663334	138663335	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69303	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr13.44116561.-	chr13	44116561	44116562	-	0	NA	"intron (NM_001242863, intron 2 of 16)"	AluSc8|SINE|Alu	-87052	NM_001127615	55068	Hs.128258	NM_001127615	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
chr22.24237287.+	chr22	24237287	24237288	+	0	NA	"exon (NM_002415, exon 3 of 3)"	"exon (NM_002415, exon 3 of 3)"	722	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr9.36859967.-	chr9	36859967	36859968	-	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	-4338	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr2.207036835.-	chr2	207036835	207036836	-	0	NA	Intergenic	SVA_D|Other|Other	-9883	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr6.64267974.+	chr6	64267974	64267975	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13946	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr2.204121180.-	chr2	204121180	204121181	-	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	-18016	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr1.151742019.-	chr1	151742019	151742020	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2888	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr14.24785821.+	chr14	24785821	24785822	+	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	3508	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr5.177580649.+	chr5	177580649	177580650	+	0	NA	"intron (NM_001034833, intron 1 of 2)"	CpG	312	NM_017838	55651	Hs.744074	NM_001034833	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
chr2.87141483.-	chr2	87141483	87141484	-	0	NA	"intron (NM_001078170, intron 1 of 22).2"	(CGG)n|Simple_repeat|Simple_repeat	-548	NM_001078170	729857	Hs.728970	NM_001078170		RGPD2	NUP358|RANBP2L2|RGP2	RANBP2-like and GRIP domain containing 2	protein-coding
chr20.57372778.-	chr20	57372778	57372779	-	0	NA	Intergenic	HAL1|LINE|L1	-19971	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr22.42027285.+	chr22	42027285	42027286	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9990	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr19.52640494.+	chr19	52640494	52640495	+	0	NA	"intron (NM_178523, intron 1 of 3)"	AluY|SINE|Alu	2697	NM_178523	90317	Hs.731969	NM_178523		ZNF616	-	zinc finger protein 616	protein-coding
chr19.53979671.-	chr19	53979671	53979672	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8682	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr2.170684199.-	chr2	170684199	170684200	-	0	NA	"exon (NM_172070, exon 1 of 39)"	"exon (NM_172070, exon 1 of 39)"	-181	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr1.2424147.+	chr1	2424147	2424148	+	0	NA	"intron (NM_014638, intron 11 of 21)"	"intron (NM_014638, intron 11 of 21)"	16393	NM_014638	9651	Hs.170156	NM_014638	ENSG00000149527	PLCH2	PLC-eta2|PLCL4|PLCeta2	"phospholipase C, eta 2"	protein-coding
chr14.105242479.+	chr14	105242479	105242480	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17459	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr8.107670049.+	chr8	107670049	107670050	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	13	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr1.7952801.+	chr1	7952801	7952802	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39250	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr4.1723300.+	chr4	1723300	1723301	+	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	83	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr7.56143770.-	chr7	56143770	56143771	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11853	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr17.1226057.-	chr17	1226057	1226058	-	0	NA	Intergenic	Intergenic	-43100	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr2.220430165.+	chr2	220430165	220430166	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6103	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr3.112807988.+	chr3	112807988	112807989	+	0	NA	Intergenic	AluYc|SINE|Alu	-69433	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr2.10424726.-	chr2	10424726	10424727	-	0	NA	Intergenic	Intergenic	18304	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr2.44294805.-	chr2	44294805	44294806	-	0	NA	Intergenic	SVA_D|Other|Other	71661	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr2.86777048.+	chr2	86777048	86777049	+	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	13572	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr8.27509113.-	chr8	27509113	27509114	-	0	NA	"exon (NM_182826, exon 3 of 6)"	"exon (NM_182826, exon 3 of 6)"	-17536	NM_016240	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	"scavenger receptor class A, member 3"	protein-coding
chr3.164119672.+	chr3	164119672	164119673	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676611	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr12.133366779.-	chr12	133366779	133366780	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28328	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr1.113336925.-	chr1	113336925	113336926	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73736	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr7.45775926.-	chr7	45775926	45775927	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32691	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr19.18298209.+	chr19	18298209	18298210	+	0	NA	Intergenic	AluJr|SINE|Alu	-5831	NM_032683	84769	Hs.515254	NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial membrane protein-like 2	protein-coding
chr17.48630916.-	chr17	48630916	48630917	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	L2b|LINE|L2	-6466	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr13.21872286.+	chr13	21872286	21872287	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	22	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr19.53979685.-	chr19	53979685	53979686	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8696	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr7.158268102.+	chr7	158268102	158268103	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57403	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr20.46019387.+	chr20	46019387	46019388	+	0	NA	Intergenic	Intergenic	-33913	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr7.155246408.-	chr7	155246408	155246409	-	0	NA	Intergenic	CpG	4416	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chrX.54371325.+	chrX	54371325	54371326	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13113	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr19.46380472.+	chr19	46380472	46380473	+	0	NA	Intergenic	Intergenic	8904	NM_015649	26145	Hs.515477	NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
chr6.157734046.+	chr6	157734046	157734047	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11207	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr4.9382855.+	chr4	9382855	9382856	+	0	NA	Intergenic	CpG	13255	NR_027279	391622	Hs.722658	NR_027279	ENSG00000205946	USP17L6P	DUB4|USP17L6|vDUB4	"ubiquitin specific peptidase 17-like family member 6, pseudogene"	pseudo
chr1.24513592.-	chr1	24513592	24513593	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-173	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr8.97520448.+	chr8	97520448	97520449	+	0	NA	"intron (NM_002998, intron 1 of 4)"	AluY|SINE|Alu	14566	NM_002998	6383	Hs.598247	NM_002998	ENSG00000169439	SDC2	CD362|HSPG|HSPG1|SYND2	syndecan 2	protein-coding
chr2.234763267.-	chr2	234763267	234763268	-	0	NA	promoter-TSS (NM_018410)	promoter-TSS (NM_018410)	55	NM_018410	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
chr14.58628019.+	chr14	58628019	58628020	+	0	NA	Intergenic	AluYg6|SINE|Alu	-9172	NM_001001872	145407	Hs.535420	NM_001001872		C14orf37	c14_5376	chromosome 14 open reading frame 37	protein-coding
chr1.54953525.+	chr1	54953525	54953526	+	0	NA	Intergenic	Intergenic	-60282	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr6.149638272.-	chr6	149638272	149638273	-	0	NA	Intergenic	CpG	1164	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr1.176318589.-	chr1	176318589	176318590	-	0	NA	Intergenic	LTR12C|LTR|ERV1	113718	NM_020318	60676	Hs.187284	NM_020318	ENSG00000116183	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
chr16.6394585.-	chr16	6394585	6394586	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluY|SINE|Alu	-325453	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr14.97183877.+	chr14	97183877	97183878	+	0	NA	Intergenic	AluY|SINE|Alu	-79807	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr19.16374086.+	chr19	16374086	16374087	+	0	NA	Intergenic	AluSx1|SINE|Alu	-61565	NM_016270	10365	Hs.744182	NM_016270	ENSG00000127528	KLF2	LKLF	Kruppel-like factor 2 (lung)	protein-coding
chr5.37382762.+	chr5	37382762	37382763	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3350	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr19.18075342.-	chr19	18075342	18075343	-	0	NA	"intron (NM_002248, intron 2 of 10)"	"intron (NM_002248, intron 2 of 10)"	-13231	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr5.168300394.-	chr5	168300394	168300395	-	0	NA	"intron (NM_003062, intron 5 of 35)"	AluJb|SINE|Alu	105134	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	miscRNA
chr11.34488088.+	chr11	34488088	34488089	+	0	NA	"intron (NM_001752, intron 10 of 12)"	AluY|SINE|Alu	27616	NM_001752	847	Hs.502302	NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
chr1.54775811.+	chr1	54775811	54775812	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96168	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr22.49948647.+	chr22	49948647	49948648	+	0	NA	Intergenic	Intergenic	102543	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr6.8388430.-	chr6	8388430	8388431	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47364	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr7.1474504.+	chr7	1474504	1474505	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24605	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr18.34765002.+	chr18	34765002	34765003	+	0	NA	"intron (NM_020776, intron 9 of 9)"	AluY|SINE|Alu	-355823	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr13.20343678.-	chr13	20343678	20343679	-	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	-13481	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr17.7141301.-	chr17	7141301	7141302	-	0	NA	"intron (NM_024297, intron 1 of 4)"	CpG	-1524	NM_024297	79142	Hs.644724	NM_024297	ENSG00000040633	PHF23	hJUNE-1b	PHD finger protein 23	protein-coding
chr20.50721911.+	chr20	50721911	50721912	+	0	NA	"intron (NM_199427, intron 5 of 8)"	CpG	86613	NM_199426	55734	Hs.473082	NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
chr12.26055507.-	chr12	26055507	26055508	-	0	NA	Intergenic	AluSc8|SINE|Alu	28495	NR_036188	100422897		NR_036188		MIR4302	-	microRNA 4302	miscRNA
chr10.59080731.+	chr10	59080731	59080732	+	0	NA	Intergenic	AluY|SINE|Alu	-16412	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr2.157272366.+	chr2	157272366	157272367	+	0	NA	Intergenic	AluSp|SINE|Alu	-19599	NM_001083112	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
chrX.70493531.-	chrX	70493531	70493532	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9511	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr7.1587792.+	chr7	1587792	1587793	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8274	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr9.7934895.-	chr9	7934895	7934896	-	0	NA	Intergenic	AluY|SINE|Alu	135096	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr14.105242452.+	chr14	105242452	105242453	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17486	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr18.11959918.+	chr18	11959918	11959919	+	0	NA	Intergenic	SVA_D|Other|Other	-21509	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr4.109524447.-	chr4	109524447	109524448	-	0	NA	"intron (NR_026968, intron 1 of 3)"	AluSx1|SINE|Alu	-17166	NR_026968	285456	Hs.683863	NM_182591	ENSG00000234492	RPL34-AS1	-	RPL34 antisense RNA 1 (head to head)	miscRNA
chr10.72575676.+	chr10	72575676	72575677	+	0	NA	promoter-TSS (NM_003901)	promoter-TSS (NM_003901)	-28	NM_003901	8879	Hs.499984	NM_003901	ENSG00000166224	SGPL1	S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding
chr15.92290098.-	chr15	92290098	92290099	-	0	NA	Intergenic	AluY|SINE|Alu	106840	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr11.72160496.-	chr11	72160496	72160497	-	0	NA	Intergenic	AluY|SINE|Alu	14772	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr16.58258037.-	chr16	58258037	58258038	-	0	NA	Intergenic	AluSq2|SINE|Alu	25803	NM_001142302	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr2.25563578.-	chr2	25563578	25563579	-	0	NA	"intron (NM_175629, intron 1 of 22)"	CpG	-1206	NM_022552	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr4.42658290.-	chr4	42658290	42658291	-	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	-832	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr9.8858147.-	chr9	8858147	8858148	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124201	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chrX.20694428.-	chrX	20694428	20694429	-	0	NA	Intergenic	AluY|SINE|Alu	409678	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr7.74447132.+	chr7	74447132	74447133	+	0	NA	Intergenic	AluSx1|SINE|Alu	42567	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr19.34074899.+	chr19	34074899	34074900	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-37962	NM_001127895	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr17.18785219.-	chr17	18785219	18785220	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16437	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr12.33592859.+	chr12	33592859	33592860	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-105	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr6.137245234.-	chr6	137245234	137245235	-	0	NA	"exon (NM_001008783, exon 2 of 2)"	"exon (NM_001008783, exon 2 of 2)"	-1832	NM_001008783	340146	Hs.369703	NM_001008783	ENSG00000182747	SLC35D3	FRCL1|bA55K22.3	"solute carrier family 35, member D3"	protein-coding
chr17.74707074.+	chr17	74707074	74707075	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-18	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chrX.93693174.+	chrX	93693174	93693175	+	0	NA	Intergenic	AluY|SINE|Alu	764162	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chrX.29933145.+	chrX	29933145	29933146	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300530	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr17.41382383.+	chr17	41382383	41382384	+	0	NA	Intergenic	AluSx|SINE|Alu	-1321	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	miscRNA
chr16.88257882.+	chr16	88257882	88257883	+	0	NA	Intergenic	Intergenic	-235997	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr16.58810864.-	chr16	58810864	58810865	-	0	NA	Intergenic	AluSq4|SINE|Alu	42618	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr17.57884680.-	chr17	57884680	57884681	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33947	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr6.1610279.+	chr6	1610279	1610280	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-402	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr12.132116822.-	chr12	132116822	132116823	-	0	NA	Intergenic	L1ME1|LINE|L1	78810	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr2.92172358.-	chr2	92172358	92172359	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-43199	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr9.72433081.+	chr9	72433081	72433082	+	0	NA	Intergenic	AluY|SINE|Alu	2574	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr2.213546615.-	chr2	213546615	213546616	-	0	NA	Intergenic	AluSc8|SINE|Alu	143263	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr9.26387251.+	chr9	26387251	26387252	+	0	NA	Intergenic	AluY|SINE|Alu	320578	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr13.46489331.-	chr13	46489331	46489332	-	0	NA	Intergenic	MER52D|LTR|ERV1	63485	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr17.4445821.+	chr17	4445821	4445822	+	0	NA	"exon (NM_001105538, exon 22 of 27)"	"exon (NM_001105538, exon 22 of 27)"	12860	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr10.135192270.+	chr10	135192270	135192271	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-471	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr13.25805367.+	chr13	25805367	25805368	+	0	NA	Intergenic	AluY|SINE|Alu	56337	NM_004685	9107	Hs.643702	NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
chr6.168352166.+	chr6	168352166	168352167	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25453	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr15.37172824.-	chr15	37172824	37172825	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5910	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr1.110881138.-	chr1	110881138	110881139	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-655	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr8.104115255.+	chr8	104115255	104115256	+	0	NA	Intergenic	AluSp|SINE|Alu	-37666	NM_024812	79870	Hs.533446	NM_001024372	ENSG00000164929	BAALC	-	"brain and acute leukemia, cytoplasmic"	protein-coding
chr12.132116757.-	chr12	132116757	132116758	-	0	NA	Intergenic	L1ME1|LINE|L1	78875	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr10.324353.-	chr10	324353	324354	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98419	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr1.246165819.+	chr1	246165819	246165820	+	0	NA	"intron (NM_001167740, intron 5 of 11)"	AluY|SINE|Alu	414895	NM_022743	64754	Hs.567571	NM_001167740	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
chr7.12736899.+	chr7	12736899	12736900	+	0	NA	Intergenic	AluSg|SINE|Alu	9988	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr7.63023266.-	chr7	63023266	63023267	-	0	NA	Intergenic	Intergenic	58202	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr20.57575055.+	chr20	57575055	57575056	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7254	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr19.36523056.+	chr19	36523056	36523057	+	0	NA	"intron (NM_015526, intron 2 of 13)"	"intron (NM_015526, intron 2 of 13)"	517	NM_001199570	25999	Hs.466539	NM_001199570	ENSG00000105270	CLIP3	CLIPR-59|CLIPR59|RSNL1	CAP-GLY domain containing linker protein 3	protein-coding
chr1.173533923.+	chr1	173533923	173533924	+	0	NA	"intron (NM_178527, intron 9 of 27)"	AluY|SINE|Alu	38310	NM_178527	284525	Hs.494981	NM_178527	ENSG00000162753	SLC9C2	RP3-436N22.2|SLC9A11	"solute carrier family 9, member C2 (putative)"	protein-coding
chr16.1845125.-	chr16	1845125	1845126	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	216	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr17.65843612.+	chr17	65843612	65843613	+	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	21832	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr13.83333840.-	chr13	83333840	83333841	-	0	NA	Intergenic	AluYb8|SINE|Alu	-1122688	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr14.24636631.+	chr14	24636631	24636632	+	0	NA	TTS (NM_006084)	TTS (NM_006084)	-4603	NM_001048205	9985	Hs.419259	NM_001048205	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 homolog (yeast)	protein-coding
chr10.70337096.-	chr10	70337096	70337097	-	0	NA	"intron (NM_030625, intron 2 of 11)"	AluSx|SINE|Alu	-16979	NM_030625	80312	Hs.708977	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
chr19.14156285.+	chr19	14156285	14156286	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13686	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr4.1358121.+	chr4	1358121	1358122	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	17017	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr4.153155264.-	chr4	153155264	153155265	-	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-118846	NM_018315	55294	Hs.717081	NM_001013415	ENSG00000109670	FBXW7	AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	"F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase"	protein-coding
chr19.17585869.+	chr19	17585869	17585870	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4569	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr17.27717860.+	chr17	27717860	27717861	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-83	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr16.89323819.-	chr16	89323819	89323820	-	0	NA	Intergenic	LTR1|LTR|ERV1	-39708	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chr16.58300828.+	chr16	58300828	58300829	+	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	16988	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chrX.53165861.+	chrX	53165861	53165862	+	0	NA	Intergenic	AluJo|SINE|Alu	54319	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr3.46925060.-	chr3	46925060	46925061	-	0	NA	"exon (NM_000316, exon 3 of 16)"	"exon (NM_000316, exon 3 of 16)"	-1321	NM_001184744	5745	Hs.1019	NM_000316	ENSG00000160801	PTH1R	PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
chr1.878121.+	chr1	878121	878122	+	0	NA	"exon (NM_152486, exon 11 of 14)"	"exon (NM_152486, exon 11 of 14)"	16558	NM_015658	26155	Hs.405987	NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR	nucleolar complex associated 2 homolog (S. cerevisiae)	protein-coding
chr10.6985545.-	chr10	6985545	6985546	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163985	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr5.178157731.-	chr5	178157731	178157732	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	28	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr1.212003706.+	chr1	212003706	212003707	+	0	NA	"intron (NM_014873, intron 1 of 7)"	CpG	408	NM_014873	9926	Hs.497674	NM_014873	ENSG00000123684	LPGAT1	FAM34A|FAM34A1|NET8	lysophosphatidylglycerol acyltransferase 1	protein-coding
chr7.158790505.+	chr7	158790505	158790506	+	0	NA	Intergenic	Intergenic	-10540	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr3.195928221.+	chr3	195928221	195928222	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSx1|SINE|Alu	10079	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr6.80035316.-	chr6	80035316	80035317	-	0	NA	Intergenic	L1PA4|LINE|L1	90861	NM_004242	9324	Hs.77558	NM_001201362	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chr7.64828127.+	chr7	64828127	64828128	+	0	NA	Intergenic	AluSg|SINE|Alu	-10641	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
chr21.11107115.-	chr21	11107115	11107116	-	0	NA	Intergenic	CpG	8178	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr2.202046022.-	chr2	202046022	202046023	-	0	NA	Intergenic	AluSz|SINE|Alu	1599	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr7.532171.-	chr7	532171	532172	-	0	NA	Intergenic	Intergenic	-27310	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr2.121244092.-	chr2	121244092	121244093	-	0	NA	Intergenic	Intergenic	20167	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr1.209280872.+	chr1	209280872	209280873	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-321296	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
chr9.133797621.-	chr9	133797621	133797622	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-16618	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr2.202092437.-	chr2	202092437	202092438	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5729	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr19.38755125.+	chr19	38755125	38755126	+	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	27	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr9.132507153.+	chr9	132507153	132507154	+	0	NA	"intron (NM_004878, intron 2 of 2)"	AluSq2|SINE|Alu	8191	NM_004878	9536	Hs.146688	NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
chr16.443668.-	chr16	443668	443669	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3524	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr5.132161317.-	chr5	132161317	132161318	-	0	NA	"exon (NM_133456, exon 1 of 7)"	"exon (NM_133456, exon 1 of 7)"	-685	NM_133456	134549	Hs.519574	NM_001172700	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
chr17.8252967.-	chr17	8252967	8252968	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9779	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr10.24081684.+	chr10	24081684	24081685	+	0	NA	"intron (NM_001098500, intron 1 of 18)"	AluY|SINE|Alu	98009	NM_001098500	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr1.201252261.-	chr1	201252261	201252262	-	0	NA	promoter-TSS (NM_000299)	promoter-TSS (NM_000299)	319	NM_001005337	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)	protein-coding
chr6.165205842.-	chr6	165205842	165205843	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517269	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr17.810106.-	chr17	810106	810107	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42755	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr4.106689305.+	chr4	106689305	106689306	+	0	NA	"intron (NM_024751, intron 5 of 11)"	AluY|SINE|Alu	57335	NM_001031720	79807	Hs.161429	NM_001031720	ENSG00000138780	GSTCD	-	"glutathione S-transferase, C-terminal domain containing"	protein-coding
chr20.62060472.-	chr20	62060472	62060473	-	0	NA	"intron (NM_004518, intron 8 of 14)"	"intron (NM_004518, intron 8 of 14)"	-43521	NM_004518	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr3.128194226.-	chr3	128194226	128194227	-	0	NA	Intergenic	Intergenic	8135	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr2.180540957.+	chr2	180540957	180540958	+	0	NA	"intron (NM_152520, intron 3 of 9)"	AluY|SINE|Alu	69812	NM_001113397	151126	Hs.655005	NM_001113397	ENSG00000144331	ZNF385B	ZFN533|ZNF533	zinc finger protein 385B	protein-coding
chr9.127104265.+	chr9	127104265	127104266	+	0	NA	"intron (NM_001166170, intron 8 of 9)"	"intron (NM_001166170, intron 8 of 9)"	-11487	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	miscRNA
chr1.10886423.-	chr1	10886423	10886424	-	0	NA	Intergenic	AluSz|SINE|Alu	29690	NM_017766	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr2.242500477.+	chr2	242500477	242500478	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1919	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr22.46522774.-	chr22	46522774	46522775	-	0	NA	Intergenic	Intergenic	-13208	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr2.85691608.+	chr2	85691608	85691609	+	0	NA	Intergenic	AluSg7|SINE|Alu	29690	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr22.37738630.-	chr22	37738630	37738631	-	0	NA	Intergenic	Intergenic	-60135	NM_013385	27128	Hs.170944	NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4	cytohesin 4	protein-coding
chr21.47461333.-	chr21	47461333	47461334	-	0	NA	Intergenic	Intergenic	56700	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr17.36083153.+	chr17	36083153	36083154	+	0	NA	"intron (NM_001165923, intron 4 of 8)"	AluY|SINE|Alu	21943	NM_000458	6928	Hs.191144	NM_000458	ENSG00000108753	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
chr1.32122105.-	chr1	32122105	32122106	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11267	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr9.37036806.+	chr9	37036806	37036807	+	0	NA	Intergenic	CpG	-2330	NM_016734	5079	Hs.654464	NM_016734		PAX5	BSAP	paired box 5	protein-coding
chr10.99735083.+	chr10	99735083	99735084	+	0	NA	"intron (NM_018058, intron 2 of 14)"	"intron (NM_018058, intron 2 of 14)"	55502	NM_001206528	55118	Hs.500736	NM_001206528	ENSG00000095713	CRTAC1	ASPIC|ASPIC1|CEP-68	cartilage acidic protein 1	protein-coding
chr3.126207343.+	chr3	126207343	126207344	+	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	-12581	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr1.1222035.-	chr1	1222035	1222036	-	0	NA	"intron (NR_037668, intron 6 of 16)"	"intron (NR_037668, intron 6 of 16)"	-6219	NM_001130413	6339	Hs.512681	NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	"sodium channel, non-voltage-gated 1, delta subunit"	protein-coding
chr9.140317320.-	chr9	140317320	140317321	-	0	NA	promoter-TSS (NM_006647)	promoter-TSS (NM_006647)	-394	NM_017820	54932	Hs.495553	NM_017820	ENSG00000187609	EXD3	mut-7	exonuclease 3'-5' domain containing 3	protein-coding
chr5.172640587.+	chr5	172640587	172640588	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21728	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr13.31023972.-	chr13	31023972	31023973	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16109	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr12.133060800.+	chr12	133060800	133060801	+	0	NA	Intergenic	Intergenic	-6357	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr7.1547720.+	chr7	1547720	1547721	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3702	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr3.164852015.-	chr3	164852015	164852016	-	0	NA	Intergenic	AluY|SINE|Alu	55732	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr3.32544044.-	chr3	32544044	32544045	-	0	NA	"intron (NM_017801, intron 1 of 3)"	CpG	-359	NM_017801	54918	Hs.731820	NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF-like MARVEL transmembrane domain containing 6	protein-coding
chrX.29584344.-	chrX	29584344	29584345	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649331	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr1.7952793.-	chr1	7952793	7952794	-	0	NA	Intergenic	AluSx1|SINE|Alu	39242	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr2.222425832.-	chr2	222425832	222425833	-	0	NA	"intron (NM_004438, intron 3 of 17)"	AluY|SINE|Alu	-11178	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
chr7.1147413.+	chr7	1147413	1147414	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19690	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr12.26964568.+	chr12	26964568	26964569	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21563	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr19.2492331.+	chr19	2492331	2492332	+	0	NA	Intergenic	AluSz|SINE|Alu	16208	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr14.102101608.+	chr14	102101608	102101609	+	0	NA	Intergenic	Intergenic	73920	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr4.110480900.-	chr4	110480900	110480901	-	0	NA	promoter-TSS (NM_017918)	promoter-TSS (NM_017918)	455	NM_017918	55013	Hs.234149	NM_017918		CCDC109B	-	coiled-coil domain containing 109B	protein-coding
chr10.133869133.+	chr10	133869133	133869134	+	0	NA	Intergenic	Intergenic	-49180	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr5.179517697.+	chr5	179517697	179517698	+	0	NA	Intergenic	AluSz|SINE|Alu	-18588	NM_018434	55819	Hs.484363	NM_018434	ENSG00000113269	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
chrX.39680340.+	chrX	39680340	39680341	+	0	NA	Intergenic	CpG	276379	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr7.5340017.-	chr7	5340017	5340018	-	0	NA	"intron (NM_001040661, intron 9 of 10)"	"intron (NM_001040661, intron 9 of 10)"	-17456	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr1.32122147.-	chr1	32122147	32122148	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11309	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr2.224724677.+	chr2	224724677	224724678	+	0	NA	Intergenic	AluSp|SINE|Alu	-22358	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr8.144267550.-	chr8	144267550	144267551	-	0	NA	Intergenic	CpG	25497	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr4.1626797.-	chr4	1626797	1626798	-	0	NA	Intergenic	CpG	-58921	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr14.97183972.+	chr14	97183972	97183973	+	0	NA	Intergenic	AluY|SINE|Alu	-79712	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr12.33592605.-	chr12	33592605	33592606	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-149	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr17.73636546.+	chr17	73636546	73636547	+	0	NA	"intron (NR_028439, intron 1 of 1)"	"intron (NR_028439, intron 1 of 1)"	3871	NR_028439	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr1.6471027.+	chr1	6471027	6471028	+	0	NA	Intergenic	AluSz|SINE|Alu	8952	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr19.8324300.+	chr19	8324300	8324301	+	0	NA	"intron (NM_024552, intron 10 of 11)"	L2a|LINE|L2	48940	NM_016579	51293	Hs.558499	NM_001165895	ENSG00000167775	CD320	8D6|8D6A|TCBLR	CD320 molecule	protein-coding
chr3.170096470.-	chr3	170096470	170096471	-	0	NA	"intron (NM_001145097, intron 1 of 5)"	AluSx1|SINE|Alu	-19059	NM_001248008	6498	Hs.581632	NM_001145097	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like oncogene	protein-coding
chr19.53979634.+	chr19	53979634	53979635	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8645	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chrM.9824.+	chrM	9824	9825	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.240129776.-	chr2	240129776	240129777	-	0	NA	"intron (NM_006037, intron 3 of 26)"	AluY|SINE|Alu	12623	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	miscRNA
chr8.70839639.-	chr8	70839639	70839640	-	0	NA	Intergenic	AluY|SINE|Alu	92340	NM_030958	81796	Hs.443609	NM_001146008	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15	"solute carrier organic anion transporter family, member 5A1"	protein-coding
chr12.99288677.+	chr12	99288677	99288678	+	0	NA	promoter-TSS (NM_001204079)	promoter-TSS (NM_001204079)	-3	NM_001204080	56899	Hs.506458	NM_001204065	ENSG00000185046	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chr8.6631670.+	chr8	6631670	6631671	+	0	NA	Intergenic	Intergenic	-28909	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr6.88117984.-	chr6	88117984	88117985	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-294	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr1.114299614.+	chr1	114299614	114299615	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2163	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr19.49964898.+	chr19	49964898	49964899	+	0	NA	"exon (NM_153329, exon 6 of 17)"	"exon (NM_153329, exon 6 of 17)"	8425	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr7.22705287.-	chr7	22705287	22705288	-	0	NA	Intergenic	CpG	61479	NM_000600	3569	Hs.654458	NM_000600	ENSG00000136244	IL6	BSF2|HGF|HSF|IFNB2|IL-6	"interleukin 6 (interferon, beta 2)"	protein-coding
chr18.32074328.-	chr18	32074328	32074329	-	0	NA	"intron (NM_001392, intron 1 of 12)"	GC_rich|Low_complexity|Low_complexity	-1074	NM_032975	1837	Hs.643454	NM_001128175	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	"dystrobrevin, alpha"	protein-coding
chr17.81153659.-	chr17	81153659	81153660	-	0	NA	Intergenic	Intergenic	21007	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
chr22.24237208.+	chr22	24237208	24237209	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	643	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr8.125593853.-	chr8	125593853	125593854	-	0	NA	"intron (NM_014751, intron 6 of 13)"	AluSc|SINE|Alu	-42510	NM_005005	4715	Hs.15977	NM_005005	ENSG00000147684	NDUFB9	B22|LYRM3|UQOR22	"NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa"	protein-coding
chr11.76520768.-	chr11	76520768	76520769	-	0	NA	Intergenic	AluY|SINE|Alu	-26483	NM_015516	25987	Hs.8361	NM_001258210	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	"tsukushi, small leucine rich proteoglycan"	protein-coding
chr3.47744612.+	chr3	47744612	47744613	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78793	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr1.8596032.+	chr1	8596032	8596033	+	0	NA	"intron (NM_001042681, intron 7 of 22)"	AluSc|SINE|Alu	-112285	NM_001042682	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr22.17719077.+	chr22	17719077	17719078	+	0	NA	Intergenic	AluSg|SINE|Alu	-28298	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr20.46019522.-	chr20	46019522	46019523	-	0	NA	Intergenic	AluY|SINE|Alu	34048	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr1.151742037.-	chr1	151742037	151742038	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2906	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr15.26638787.+	chr15	26638787	26638788	+	0	NA	Intergenic	Intergenic	235450	NM_001191321	2562	Hs.302352	NM_000814	ENSG00000166206	GABRB3	ECA5	"gamma-aminobutyric acid (GABA) A receptor, beta 3"	protein-coding
chr1.6471011.+	chr1	6471011	6471012	+	0	NA	Intergenic	AluSz|SINE|Alu	8968	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr9.861793.-	chr9	861793	861794	-	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	-20103	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr14.92966394.-	chr14	92966394	92966395	-	0	NA	"3' UTR (NM_153648, exon 17 of 17)"	"3' UTR (NM_153648, exon 17 of 17)"	13731	NM_024832	79890	Hs.326822	NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
chr1.183892722.-	chr1	183892722	183892723	-	0	NA	"intron (NM_015149, intron 18 of 18)"	MIRc|SINE|MIR	-114141	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr14.105434244.+	chr14	105434244	105434245	+	0	NA	"intron (NM_138420, intron 1 of 6)"	"intron (NM_138420, intron 1 of 6)"	10450	NM_138420	113146	Hs.441783	NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
chr2.101245766.+	chr2	101245766	101245767	+	0	NA	Intergenic	Intergenic	66348	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.239047598.-	chr2	239047598	239047599	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-235	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr6.12012485.+	chr6	12012485	12012486	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-239	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr7.821272.-	chr7	821272	821273	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33922	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr8.70839640.+	chr8	70839640	70839641	+	0	NA	Intergenic	AluY|SINE|Alu	-92341	NM_030958	81796	Hs.443609	NM_001146008	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15	"solute carrier organic anion transporter family, member 5A1"	protein-coding
chr10.102499237.+	chr10	102499237	102499238	+	0	NA	Intergenic	CpG	-6231	NM_003988	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	PAPRS	paired box 2	protein-coding
chr14.102109500.-	chr14	102109500	102109501	-	0	NA	Intergenic	AluY|SINE|Alu	-81812	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr14.78273462.-	chr14	78273462	78273463	-	0	NA	"intron (NM_001142545, intron 1 of 9)"	AluYa5|SINE|Alu	-7036	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr11.9479424.+	chr11	9479424	9479425	+	0	NA	Intergenic	AluSg|SINE|Alu	2821	NR_036539	644656	Hs.597846	NR_036539		LOC644656	-	uncharacterized LOC644656	miscRNA
chr11.1122302.+	chr11	1122302	1122303	+	0	NA	Intergenic	Intergenic	47427	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr4.7154184.-	chr4	7154184	7154185	-	0	NA	Intergenic	AluY|SINE|Alu	40190	NM_020777	57537	Hs.479099	NM_020777	ENSG00000184985	SORCS2	-	sortilin-related VPS10 domain containing receptor 2	protein-coding
chr2.213546624.-	chr2	213546624	213546625	-	0	NA	Intergenic	AluSc8|SINE|Alu	143272	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr1.147532694.+	chr1	147532694	147532695	+	0	NA	Intergenic	CpG	-48363	NR_003377	728939	Hs.696575	NR_003377	ENSG00000215860	PDZK1P1	-	PDZ domain containing 1 pseudogene 1	pseudo
chr7.1587783.+	chr7	1587783	1587784	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8283	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr6.21852794.+	chr6	21852794	21852795	+	0	NA	"intron (NR_015410, intron 4 of 11)"	SVA_F|Other|Other	186119	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr6.46742384.+	chr6	46742384	46742385	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18710	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr11.71702889.+	chr11	71702889	71702890	+	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	-7069	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr2.96149444.-	chr2	96149444	96149445	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1035	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr17.4697358.-	chr17	4697358	4697359	-	0	NA	Intergenic	AluY|SINE|Alu	2081	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr18.49731934.+	chr18	49731934	49731935	+	0	NA	Intergenic	AluY|SINE|Alu	-134608	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr10.102414589.-	chr10	102414589	102414590	-	0	NA	Intergenic	CpG	90879	NM_003988	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	PAPRS	paired box 2	protein-coding
chr22.46929371.+	chr22	46929371	46929372	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3696	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr22.43670607.-	chr22	43670607	43670608	-	0	NA	"intron (NM_173050, intron 4 of 21)"	"intron (NM_173050, intron 4 of 21)"	-68787	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr20.56237705.-	chr20	56237705	56237706	-	0	NA	"intron (NM_199171, intron 1 of 3)"	"intron (NM_199171, intron 1 of 3)"	-27975	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	"prostate transmembrane protein, androgen induced 1"	protein-coding
chr1.10462741.+	chr1	10462741	10462742	+	0	NA	"intron (NM_002631, intron 3 of 12)"	AluY|SINE|Alu	3656	NM_002631	5226	Hs.464071	NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
chr19.45667948.+	chr19	45667948	45667949	+	0	NA	"intron (NM_024108, intron 3 of 5)"	"intron (NM_024108, intron 3 of 5)"	-4540	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr2.52338197.+	chr2	52338197	52338198	+	0	NA	Intergenic	AluY|SINE|Alu	-1078523	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr15.44832048.-	chr15	44832048	44832049	-	0	NA	"intron (NM_003758, intron 2 of 7)"	AluJb|SINE|Alu	-2782	NM_003758	8669	Hs.404056	NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	"eukaryotic translation initiation factor 3, subunit J"	protein-coding
chr1.161879488.+	chr1	161879488	161879489	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114156	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr22.22259609.-	chr22	22259609	22259610	-	0	NA	Intergenic	AluSq2|SINE|Alu	37639	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr7.78455434.-	chr7	78455434	78455435	-	0	NA	"intron (NM_012301, intron 2 of 21)"	AluY|SINE|Alu	182870	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	miscRNA
chr18.73357755.+	chr18	73357755	73357756	+	0	NA	Intergenic	L2|LINE|L2	-218166	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr11.6651826.+	chr11	6651826	6651827	+	0	NA	"exon (NM_003737, exon 10 of 21)"	"exon (NM_003737, exon 10 of 21)"	-11134	NM_000391	1200	Hs.523454	NM_000391	ENSG00000166340	TPP1	CLN2|LPIC|TPP-1	tripeptidyl peptidase I	protein-coding
chr11.59383060.-	chr11	59383060	59383061	-	0	NA	"exon (NM_002556, exon 1 of 14)"	"exon (NM_002556, exon 1 of 14)"	-557	NM_002556	5007	Hs.597091	NM_002556	ENSG00000110048	OSBP	OSBP1	oxysterol binding protein	protein-coding
chr17.47363957.-	chr17	47363957	47363958	-	0	NA	Intergenic	AluSx|SINE|Alu	-38352	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr14.23233414.+	chr14	23233414	23233415	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2317	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr21.45684286.-	chr21	45684286	45684287	-	0	NA	Intergenic	AluY|SINE|Alu	2187	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr3.128194311.-	chr3	128194311	128194312	-	0	NA	Intergenic	Intergenic	8220	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr19.14508393.-	chr19	14508393	14508394	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16437	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr2.96149449.-	chr2	96149449	96149450	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1030	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr17.29255179.-	chr17	29255179	29255180	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6425	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr7.1798881.+	chr7	1798881	1798882	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50083	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr21.43198274.-	chr21	43198274	43198275	-	0	NA	Intergenic	Intergenic	11025	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr7.72991446.-	chr7	72991446	72991447	-	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	-1567	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr7.36192833.-	chr7	36192833	36192834	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	3	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr19.47142059.-	chr19	47142059	47142060	-	0	NA	Intergenic	Intergenic	4120	NM_033258	94235	Hs.283961	NM_033258	ENSG00000167414	GNG8	-	"guanine nucleotide binding protein (G protein), gamma 8"	protein-coding
chr3.196619077.+	chr3	196619077	196619078	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24350	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr12.46426722.+	chr12	46426722	46426723	+	0	NA	Intergenic	AluY|SINE|Alu	-42321	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr9.138397724.+	chr9	138397724	138397725	+	0	NA	Intergenic	Intergenic	5247	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr19.15719732.-	chr19	15719732	15719733	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6297	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr11.66884116.+	chr11	66884116	66884117	+	0	NA	Intergenic	AluSx|SINE|Alu	-2624	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr9.128918425.+	chr9	128918425	128918426	+	0	NA	Intergenic	Intergenic	-170698	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr6.2945815.+	chr6	2945815	2945816	+	0	NA	Intergenic	AluSz6|SINE|Alu	16589	NM_001271825	5269	Hs.731506	NM_001195291	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	"serpin peptidase inhibitor, clade B (ovalbumin), member 6"	protein-coding
chr9.133430092.+	chr9	133430092	133430093	+	0	NA	Intergenic	Intergenic	24789	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr14.101892579.+	chr14	101892579	101892580	+	0	NA	Intergenic	AluY|SINE|Alu	129434	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr9.100747348.+	chr9	100747348	100747349	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1859	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr19.589055.-	chr19	589055	589056	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	838	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr14.50838382.+	chr14	50838382	50838383	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24235	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr11.108417672.-	chr11	108417672	108417673	-	0	NA	"intron (NM_015065, intron 1 of 5)"	AluSg|SINE|Alu	-46702	NM_015065	23086	Hs.28540	NM_001144763	ENSG00000110723	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
chr10.48428836.+	chr10	48428836	48428837	+	0	NA	"exon (NM_004962, exon 2 of 3)"	"exon (NM_004962, exon 2 of 3)"	10302	NM_004962	2662	Hs.2171	NM_004962	ENSG00000107623	GDF10	BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
chr2.70416506.-	chr2	70416506	70416507	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1645	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr5.2038942.+	chr5	2038942	2038943	+	0	NA	Intergenic	CpG	-156062	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr2.48010419.+	chr2	48010419	48010420	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	198	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr6.39156027.-	chr6	39156027	39156028	-	0	NA	TTS (NM_003740)	TTS (NM_003740)	-41224	NM_003740	8645	Hs.444448	NM_003740	ENSG00000164626	KCNK5	K2p5.1|TASK-2|TASK2	"potassium channel, subfamily K, member 5"	protein-coding
chr22.46522775.-	chr22	46522775	46522776	-	0	NA	Intergenic	Intergenic	-13209	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr5.171395380.+	chr5	171395380	171395381	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38497	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr8.120878176.+	chr8	120878176	120878177	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7724	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr2.60946437.-	chr2	60946437	60946438	-	0	NA	Intergenic	AluY|SINE|Alu	36928	NM_022894	64895	Hs.387471	NM_022894		PAPOLG	-	poly(A) polymerase gamma	protein-coding
chr1.42522906.-	chr1	42522906	42522907	-	0	NA	Intergenic	AluY|SINE|Alu	21310	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr14.74796571.+	chr14	74796571	74796572	+	0	NA	Intergenic	AluSz|SINE|Alu	-18595	NM_018228	55237	Hs.578167	NM_018228	ENSG00000133980	VRTN	C14orf115|vertnin	vertebrae development associated	protein-coding
chr3.71746098.+	chr3	71746098	71746099	+	0	NA	"intron (NM_001134650, intron 4 of 7)"	AluY|SINE|Alu	28428	NM_001134651	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr9.90728948.+	chr9	90728948	90728949	+	0	NA	Intergenic	REP522|Satellite|telo	20952	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	"SPATA31 subfamily C, member 2"	protein-coding
chr3.139481332.-	chr3	139481332	139481333	-	0	NA	Intergenic	Intergenic	84447	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr2.38825117.-	chr2	38825117	38825118	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5061	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr9.28773100.+	chr9	28773100	28773101	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53797	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr17.79823330.-	chr17	79823330	79823331	-	0	NA	Intergenic	Intergenic	4786	NM_000918	5034	Hs.464336	NM_000918	ENSG00000185624	P4HB	DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	"prolyl 4-hydroxylase, beta polypeptide"	protein-coding
chr9.38829857.-	chr9	38829857	38829858	-	0	NA	Intergenic	AluY|SINE|Alu	-208772	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr11.1946058.-	chr11	1946058	1946059	-	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	-5259	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr14.103097674.-	chr14	103097674	103097675	-	0	NA	"intron (NM_015156, intron 2 of 11)"	AluY|SINE|Alu	-38678	NM_015156	23186	Hs.510521	NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
chr13.52733200.+	chr13	52733200	52733201	+	0	NA	"intron (NM_002498, intron 1 of 15)"	LTR26E|LTR|ERV1	470	NM_152720	4752	Hs.409989	NM_001146099	ENSG00000136098	NEK3	HSPK36	NIMA-related kinase 3	protein-coding
chrX.132182732.+	chrX	132182732	132182733	+	0	NA	Intergenic	AluY|SINE|Alu	-20432	NM_031907	83844	Hs.731249	NM_031907		USP26	-	ubiquitin specific peptidase 26	protein-coding
chr1.21893065.-	chr1	21893065	21893066	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57207	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr17.4708703.-	chr17	4708703	4708704	-	0	NA	Intergenic	AluSp|SINE|Alu	1693	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr13.32980198.-	chr13	32980198	32980199	-	0	NA	"intron (NM_052818, intron 3 of 4)"	AluY|SINE|Alu	-22117	NM_052818	90634	Hs.732118	NM_001079691	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
chr9.121440487.-	chr9	121440487	121440488	-	0	NA	Intergenic	SVA_B|Other|Other	-691252	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr19.10587512.+	chr19	10587512	10587513	+	0	NA	Intergenic	AluSq2|SINE|Alu	23879	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr17.7983311.+	chr17	7983311	7983312	+	0	NA	"intron (NM_001139, intron 6 of 14)"	CpG-10128	7710	NM_001139	242	Hs.136574	NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	"arachidonate 12-lipoxygenase, 12R type"	protein-coding
chr9.134158188.-	chr9	134158188	134158189	-	0	NA	Intergenic	CpG	6282	NM_033387	286336	Hs.704076	NM_033387	ENSG00000126882	FAM78A	C9orf59	"family with sequence similarity 78, member A"	protein-coding
chr7.121013902.+	chr7	121013902	121013903	+	0	NA	"intron (NM_001040020, intron 3 of 9)"	AluY|SINE|Alu	22520	NM_014888	10447	Hs.434053	NM_001040020	ENSG00000196937	FAM3C	ILEI	"family with sequence similarity 3, member C"	protein-coding
chr2.17721625.+	chr2	17721625	17721626	+	0	NA	promoter-TSS (NM_003385)	promoter-TSS (NM_003385)	-182	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
chr16.33966291.+	chr16	33966291	33966292	+	0	NA	Intergenic	CpG	-3788	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr20.49348121.+	chr20	49348121	49348122	+	0	NA	promoter-TSS (NM_032521)	promoter-TSS (NM_032521)	40	NM_032521	84612	Hs.589848	NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 partitioning defective 6 homolog beta (C. elegans)	protein-coding
chr9.139071826.+	chr9	139071826	139071827	+	0	NA	Intergenic	Intergenic	23178	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr7.1117039.+	chr7	1117039	1117040	+	0	NA	"intron (NM_032350, intron 2 of 4)"	AluY|SINE|Alu	-9404	NM_001505	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr10.70329087.+	chr10	70329087	70329088	+	0	NA	"intron (NM_030625, intron 1 of 11)"	AluY|SINE|Alu	8970	NM_030625	80312	Hs.708977	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
chr4.124364000.+	chr4	124364000	124364001	+	0	NA	Intergenic	AluSx3|SINE|Alu	43355	NM_005841	10252	Hs.436944	NM_001258038	ENSG00000164056	SPRY1	hSPRY1	"sprouty homolog 1, antagonist of FGF signaling (Drosophila)"	protein-coding
chr6.109611736.+	chr6	109611736	109611737	+	0	NA	Intergenic	CpG	-3770	NR_028595	221262	Hs.723571	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	"coiled-coil domain containing 162, pseudogene"	pseudo
chr7.66607929.+	chr7	66607929	66607930	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28545	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr3.126260572.-	chr3	126260572	126260573	-	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	-17186	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr2.1554800.+	chr2	1554800	1554801	+	0	NA	Intergenic	Intergenic	136620	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr16.87910824.-	chr16	87910824	87910825	-	0	NA	Intergenic	AluY|SINE|Alu	7724	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr8.14459353.-	chr8	14459353	14459354	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251666	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr17.47653122.+	chr17	47653122	47653123	+	0	NA	promoter-TSS (NM_007225)	promoter-TSS (NM_007225)	-176	NM_007225	11248	Hs.55069	NM_007225		NXPH3	NPH3	neurexophilin 3	protein-coding
chr1.32122142.+	chr1	32122142	32122143	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11304	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr11.6429165.+	chr11	6429165	6429166	+	0	NA	"intron (NM_001257324, intron 1 of 7)"	AluYb8|SINE|Alu	-2274	NM_001257320	322	Hs.372840	NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	protein-coding
chr3.197282932.+	chr3	197282932	197282933	+	0	NA	promoter-TSS (NM_004051)	promoter-TSS (NM_004051)	-74	NM_004051	622	Hs.274539	NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	"3-hydroxybutyrate dehydrogenase, type 1"	protein-coding
chr12.31575290.-	chr12	31575290	31575291	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96131	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr12.3525046.+	chr12	3525046	3525047	+	0	NA	"intron (NM_001256536, intron 1 of 9)"	MIR3|SINE|MIR	34531	NM_001256536	56341	Hs.504530	NM_001256537	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
chrX.137770391.+	chrX	137770391	137770392	+	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	-20437	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr3.60261930.-	chr3	60261930	60261931	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluY|SINE|Alu	-975203	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr15.89358740.-	chr15	89358740	89358741	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12066	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr11.64058776.-	chr11	64058776	64058777	-	0	NA	promoter-TSS (NM_033310)	promoter-TSS (NM_033310)	17	NM_033310	50801	Hs.647233	NM_033310	ENSG00000182450	KCNK4	K2p4.1|TRAAK|TRAAK1	"potassium channel, subfamily K, member 4"	protein-coding
chr19.17434546.-	chr19	17434546	17434547	-	0	NA	TTS (NM_024050)	TTS (NM_024050)	-11092	NM_020959	57719	Hs.590990	NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
chr1.194872514.+	chr1	194872514	194872515	+	0	NA	Intergenic	AluSx|SINE|Alu	1679097	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr9.136951686.+	chr9	136951686	136951687	+	0	NA	Intergenic	AluY|SINE|Alu	-18545	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr22.18532581.-	chr22	18532581	18532582	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20430	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr1.43612804.+	chr1	43612804	43612805	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-790	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chr16.78282863.-	chr16	78282863	78282864	-	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	-149536	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr6.33500259.+	chr6	33500259	33500260	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47811	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr19.3116428.-	chr19	3116428	3116429	-	0	NA	"intron (NM_002067, intron 4 of 6)"	MLT1C|LTR|ERVL-MaLR	19763	NM_002068	2769	Hs.73797	NM_002068	ENSG00000060558	GNA15	GNA16	"guanine nucleotide binding protein (G protein), alpha 15 (Gq class)"	protein-coding
chr21.47403512.+	chr21	47403512	47403513	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1849	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr20.52362426.-	chr20	52362426	52362427	-	0	NA	Intergenic	AluSx|SINE|Alu	-129822	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr6.108438932.+	chr6	108438932	108438933	+	0	NA	Intergenic	CpG	-42991	NM_014028	28962	Hs.741218	NM_014028	ENSG00000081087	OSTM1	GIPN|GL|OPTB5	osteopetrosis associated transmembrane protein 1	protein-coding
chr17.65363614.+	chr17	65363614	65363615	+	0	NA	promoter-TSS (NM_002816)	promoter-TSS (NM_002816)	-893	NM_002816	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr6.150275497.+	chr6	150275497	150275498	+	0	NA	Intergenic	CpG	-9646	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr5.89746516.+	chr5	89746516	89746517	+	0	NA	Intergenic	AluSz|SINE|Alu	24069	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr22.42027288.-	chr22	42027288	42027289	-	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	-9993	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr15.100080074.-	chr15	100080074	100080075	-	0	NA	Intergenic	AluSq2|SINE|Alu	26059	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr19.34074905.+	chr19	34074905	34074906	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-37956	NM_001127895	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr2.97760592.+	chr2	97760592	97760593	+	0	NA	promoter-TSS (NM_199336)	promoter-TSS (NM_199336)	-10	NM_199336	151313	Hs.567723	NM_199336	ENSG00000144199	FAHD2B	-	fumarylacetoacetate hydrolase domain containing 2B	protein-coding
chr5.91967064.+	chr5	91967064	91967065	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939435	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr5.86907803.-	chr5	86907803	86907804	-	0	NA	Intergenic	AluY|SINE|Alu	198953	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr3.195726601.-	chr3	195726601	195726602	-	0	NA	Intergenic	MLT2B4|LTR|ERVL	9451	NR_003264	255812	Hs.596261	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1"	pseudo
chr15.44083626.+	chr15	44083626	44083627	+	0	NA	promoter-TSS (NM_001199878)	promoter-TSS (NM_001199878)	-414	NM_001018108	10169	Hs.732549	NM_005770		SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
chr20.32914493.+	chr20	32914493	32914494	+	0	NA	Intergenic	AluSx|SINE|Alu	-14885	NM_001161766	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr20.55247386.-	chr20	55247386	55247387	-	0	NA	Intergenic	AluSz6|SINE|Alu	-43028	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr7.5251994.+	chr7	5251994	5251995	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	"intron (NM_001033519, intron 2 of 11)"	-1906	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr19.45532245.+	chr19	45532245	45532246	+	0	NA	"exon (NM_006509, exon 7 of 11)"	"exon (NM_006509, exon 7 of 11)"	-10053	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr20.14910712.-	chr20	14910712	14910713	-	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	551	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr3.45348414.+	chr3	45348414	45348415	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80600	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr9.38075476.-	chr9	38075476	38075477	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6266	NM_003028	6461	Hs.521482	NM_003028		SHB	RP11-3J10.8|bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
chr22.39649133.+	chr22	39649133	39649134	+	0	NA	Intergenic	Intergenic	-8176	NM_002608	5155	Hs.1976	NM_002608	ENSG00000100311	PDGFB	PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
chr2.136133253.+	chr2	136133253	136133254	+	0	NA	"intron (NM_032143, intron 3 of 20)"	AluY|SINE|Alu	155553	NM_032143	84083	Hs.658422	NM_032143	ENSG00000121988	ZRANB3	4933425L19Rik|AH2	"zinc finger, RAN-binding domain containing 3"	protein-coding
chr1.9832314.-	chr1	9832314	9832315	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52236	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr19.33557659.-	chr19	33557659	33557660	-	0	NA	Intergenic	Intergenic	1835	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr1.150158669.-	chr1	150158669	150158670	-	0	NA	Intergenic	AluY|SINE|Alu	-36499	NM_016274	51177	Hs.438824	NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|OC120	"pleckstrin homology domain containing, family O member 1"	protein-coding
chr18.34669449.+	chr18	34669449	34669450	+	0	NA	"intron (NM_020776, intron 7 of 9)"	AluSx|SINE|Alu	-260270	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr3.32863302.-	chr3	32863302	32863303	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3792	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chrX.118602878.-	chrX	118602878	118602879	-	0	NA	"non-coding (NR_028443, exon 1 of 1)"	"non-coding (NR_028443, exon 1 of 1)"	-205	NR_028443	100303728	Hs.742239	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	miscRNA
chr20.62608679.+	chr20	62608679	62608680	+	0	NA	"exon (NM_080621, exon 2 of 5)"	"exon (NM_080621, exon 2 of 5)"	2316	NM_080621	140700	Hs.27189	NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
chr1.9832324.+	chr1	9832324	9832325	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52226	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr18.2679098.+	chr18	2679098	2679099	+	0	NA	"intron (NM_015295, intron 5 of 47)"	AluSg|SINE|Alu	23212	NM_015295	23347	Hs.8118	NM_015295	ENSG00000101596	SMCHD1	-	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
chr14.23233390.+	chr14	23233390	23233391	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2341	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr13.113714962.+	chr13	113714962	113714963	+	0	NA	"exon (NM_024979, exon 5 of 30)"	"exon (NM_024979, exon 5 of 30)"	-45140	NM_000131	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII (serum prothrombin conversion accelerator)	protein-coding
chr14.73712797.-	chr14	73712797	73712798	-	0	NA	"exon (NM_173462, exon 5 of 26)"	"exon (NM_173462, exon 5 of 26)"	-8592	NM_173462	89932	Hs.509909	NM_173462	ENSG00000100767	PAPLN	-	"papilin, proteoglycan-like sulfated glycoprotein"	protein-coding
chr19.50614550.-	chr19	50614550	50614551	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1195	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr14.80915473.-	chr14	80915473	80915474	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218076	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr2.15359863.-	chr2	15359863	15359864	-	0	NA	"intron (NM_015909, intron 47 of 51)"	SVA_E|Other|Other	-341609	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
chr3.50701741.-	chr3	50701741	50701742	-	0	NA	Intergenic	AluY|SINE|Alu	10770	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr3.196619096.+	chr3	196619096	196619097	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24369	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr1.51444003.-	chr1	51444003	51444004	-	0	NA	Intergenic	CpG	-8361	NM_078626	1031	Hs.525324	NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	"cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)"	protein-coding
chrX.32910762.+	chrX	32910762	32910763	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127555	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr7.12751279.-	chr7	12751279	12751280	-	0	NA	Intergenic	AluY|SINE|Alu	-24368	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr1.226491553.+	chr1	226491553	226491554	+	0	NA	"intron (NM_001270410, intron 1 of 14)"	AluSx|SINE|Alu	5651	NM_001270409	286826	Hs.120817	NM_001270409	ENSG00000183814	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 homolog (C. elegans)	protein-coding
chr5.172640583.+	chr5	172640583	172640584	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21732	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr16.632138.+	chr16	632138	632139	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7219	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr15.26543477.-	chr15	26543477	26543478	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-182517	NR_038852	503519	Hs.371380	NR_038851	ENSG00000259150	LOC503519	-	uncharacterized LOC503519	miscRNA
chr9.861800.-	chr9	861800	861801	-	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	-20110	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr10.135192254.+	chr10	135192254	135192255	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-487	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr8.22594683.+	chr8	22594683	22594684	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43868	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr14.83280572.-	chr14	83280572	83280573	-	0	NA	Intergenic	SVA_D|Other|Other	1280367	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr18.10581567.+	chr18	10581567	10581568	+	0	NA	Intergenic	AluSq2|SINE|Alu	55694	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr20.5485014.+	chr20	5485014	5485015	+	0	NA	"non-coding (NR_015406, exon 1 of 2)"	"non-coding (NR_015406, exon 1 of 2)"	228	NR_015406	149837	Hs.709473	NR_015406		LINC00654	-	long intergenic non-protein coding RNA 654	miscRNA
chr11.86869705.+	chr11	86869705	86869706	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	120819	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr6.2765769.+	chr6	2765769	2765770	+	0	NA	"5' UTR (NM_020135, exon 1 of 7)"	"5' UTR (NM_020135, exon 1 of 7)"	103	NM_130395	56897	Hs.236828	NM_020135	ENSG00000124535	WRNIP1	RP11-420G6.2|WHIP|bA420G6.2	Werner helicase interacting protein 1	protein-coding
chr2.157198641.+	chr2	157198641	157198642	+	0	NA	Intergenic	CpG	-9354	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr19.42490059.+	chr19	42490059	42490060	+	0	NA	"exon (NM_001256213, exon 6 of 23)"	"exon (NM_001256213, exon 6 of 23)"	7560	NM_001256213	478	Hs.515427	NM_001256213	ENSG00000105409	ATP1A3	AHC2|DYT12|RDP	"ATPase, Na+/K+ transporting, alpha 3 polypeptide"	protein-coding
chr5.178491466.-	chr5	178491466	178491467	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3859	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr1.156527500.-	chr1	156527500	156527501	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14896	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr9.87981536.-	chr9	87981536	87981537	-	0	NA	Intergenic	AluYc|SINE|Alu	-375408	NM_015239	23287	Hs.719980	NM_015239	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
chr10.97383341.-	chr10	97383341	97383342	-	0	NA	"intron (NM_001017423, intron 11 of 17)"	AluSp|SINE|Alu	-33226	NM_001017423	5832	Hs.500645	NM_001017423	ENSG00000059573	ALDH18A1	ARCL3A|GSAS|P5CS|PYCS	"aldehyde dehydrogenase 18 family, member A1"	protein-coding
chr1.183670916.-	chr1	183670916	183670917	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48468	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr16.84670300.+	chr16	84670300	84670301	+	0	NA	Intergenic	AluY|SINE|Alu	-11831	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr19.23432260.-	chr19	23432260	23432261	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-912	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr9.10786999.+	chr9	10786999	10787000	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174276	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr16.30170690.-	chr16	30170690	30170691	-	0	NA	Intergenic	AluY|SINE|Alu	24041	NM_001193333	11151	Hs.415067	NM_001193333	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|TACO|p57	"coronin, actin binding protein, 1A"	protein-coding
chr10.11719971.-	chr10	11719971	11719972	-	0	NA	Intergenic	AluSz|SINE|Alu	64385	NM_024693	79746	Hs.22242	NM_024693	ENSG00000134463	ECHDC3	-	enoyl CoA hydratase domain containing 3	protein-coding
chr7.2943511.+	chr7	2943511	2943512	+	0	NA	Intergenic	Intergenic	-59552	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr3.126207229.-	chr3	126207229	126207230	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12467	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr11.2884169.-	chr11	2884169	2884170	-	0	NA	Intergenic	CpG	7094	NR_024627	55539	Hs.127821	NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor (non-protein coding)	miscRNA
chr20.32227378.-	chr20	32227378	32227379	-	0	NA	"intron (NM_001039709, intron 9 of 10)"	AluY|SINE|Alu	22714	NM_080825	128864	Hs.324104	NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
chr14.105736131.+	chr14	105736131	105736132	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20390	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr1.27394495.-	chr1	27394495	27394496	-	0	NA	Intergenic	AluY|SINE|Alu	55162	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr7.65929005.+	chr7	65929005	65929006	+	0	NA	Intergenic	MER21A|LTR|ERVL	-63610	NR_026873	285908	Hs.50755	NM_181722	ENSG00000179406	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	miscRNA
chr8.144503750.+	chr8	144503750	144503751	+	0	NA	Intergenic	CpG	8852	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr19.49061672.+	chr19	49061672	49061673	+	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	6243	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr3.126268877.-	chr3	126268877	126268878	-	0	NA	"exon (NM_152533, exon 4 of 4)"	"exon (NM_152533, exon 4 of 4)"	-8881	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr19.3766726.-	chr19	3766726	3766727	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4061	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr2.239047574.+	chr2	239047574	239047575	+	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	211	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr8.29884836.+	chr8	29884836	29884837	+	0	NA	Intergenic	CpG	55813	NM_016127	51669	Hs.521487	NM_016127	ENSG00000133872	TMEM66	FOAP-7|SARAF|XTP3	transmembrane protein 66	protein-coding
chr7.1587801.+	chr7	1587801	1587802	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8265	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr12.8057419.+	chr12	8057419	8057420	+	0	NA	Intergenic	AluSg7|SINE|Alu	31473	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr4.110600254.-	chr4	110600254	110600255	-	0	NA	"intron (NM_017918, intron 4 of 7)"	SVA_A|Other|Other	-24375	NM_001226	839	Hs.654616	NM_001226	ENSG00000138794	CASP6	MCH2	"caspase 6, apoptosis-related cysteine peptidase"	protein-coding
chr5.86907771.+	chr5	86907771	86907772	+	0	NA	Intergenic	AluY|SINE|Alu	-198921	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr15.73830892.-	chr15	73830892	73830893	-	0	NA	"intron (NM_001042367, intron 2 of 5)"	AluYk4|SINE|Alu	-94861	NM_012428	27020	Hs.187866	NM_001161363	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
chr6.168395124.-	chr6	168395124	168395125	-	0	NA	Intergenic	AluSx|SINE|Alu	17505	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr7.1324806.+	chr7	1324806	1324807	+	0	NA	Intergenic	Intergenic	52152	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr3.93689444.+	chr3	93689444	93689445	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3490	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr9.16855804.-	chr9	16855804	16855805	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14982	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr2.64811823.+	chr2	64811823	64811824	+	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	-22623	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr4.3573873.-	chr4	3573873	3573874	-	0	NA	Intergenic	Intergenic	4723	NR_040045	285492	Hs.145563	NM_173661		FLJ35424	-	uncharacterized FLJ35424	miscRNA
chr18.14147142.-	chr18	14147142	14147143	-	0	NA	Intergenic	Intergenic	14653	NR_033354	162655	Hs.352635	NM_145287		ZNF519	HsT2362	zinc finger protein 519	protein-coding
chr2.101214329.-	chr2	101214329	101214330	-	0	NA	Intergenic	AluY|SINE|Alu	-34911	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr22.44845320.+	chr22	44845320	44845321	+	0	NA	Intergenic	Intergenic	48685	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr19.18180387.+	chr19	18180387	18180388	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17310	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr19.46009668.+	chr19	46009668	46009669	+	0	NA	Intergenic	Intergenic	-1020	NM_003370	7408	Hs.515469	NM_003370	ENSG00000125753	VASP	-	vasodilator-stimulated phosphoprotein	protein-coding
chr5.177538223.-	chr5	177538223	177538224	-	0	NA	Intergenic	AluSp|SINE|Alu	2333	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr10.71044922.+	chr10	71044922	71044923	+	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	15166	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr14.101892603.+	chr14	101892603	101892604	+	0	NA	Intergenic	AluY|SINE|Alu	129410	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr8.60674692.+	chr8	60674692	60674693	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519262	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr7.156932121.-	chr7	156932121	156932122	-	0	NA	"intron (NM_014671, intron 1 of 22)"	(CTGGGG)n|Simple_repeat|Simple_repeat	-466	NM_014671	9690	Hs.118351	NM_014671	ENSG00000009335	UBE3C	HECTH2	ubiquitin protein ligase E3C	protein-coding
chr22.46966190.+	chr22	46966190	46966191	+	0	NA	Intergenic	Intergenic	-33123	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr20.33283479.-	chr20	33283479	33283480	-	0	NA	Intergenic	AluY|SINE|Alu	8669	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr22.49428559.-	chr22	49428559	49428560	-	0	NA	Intergenic	Intergenic	-165977	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr11.65155206.+	chr11	65155206	65155207	+	0	NA	"intron (NM_031904, intron 2 of 10)"	AluY|SINE|Alu	1165	NM_031904	83786	Hs.578433	NM_031904	ENSG00000126391	FRMD8	-	FERM domain containing 8	protein-coding
chr12.79439087.+	chr12	79439087	79439088	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-346	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr7.99584990.-	chr7	99584990	99584991	-	0	NA	Intergenic	Intergenic	-6605	NR_036679	646282	Hs.721816	NR_036679	ENSG00000214313	AZGP1P1	-	"alpha-2-glycoprotein 1, zinc-binding pseudogene 1"	pseudo
chr8.57184595.-	chr8	57184595	57184596	-	0	NA	Intergenic	SVA_D|Other|Other	-48646	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr22.26439736.+	chr22	26439736	26439737	+	0	NA	Intergenic	AluSx3|SINE|Alu	-125704	NM_001184773	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr2.71357895.+	chr2	71357895	71357896	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	451	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr19.35531901.-	chr19	35531901	35531902	-	0	NA	TTS (NM_001037)	TTS (NM_001037)	-491	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr17.27070049.+	chr17	27070049	27070050	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-974	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr2.136552095.+	chr2	136552095	136552096	+	0	NA	"intron (NM_002299, intron 14 of 16)"	"intron (NM_002299, intron 14 of 16)"	-25666	NR_045486	100507600	Hs.662020	NR_045486	ENSG00000226806	LOC100507600	-	uncharacterized LOC100507600	miscRNA
chr7.124525628.-	chr7	124525628	124525629	-	0	NA	"intron (NR_003102, intron 6 of 19)"	AluY|SINE|Alu	-44409	NM_001042594	25913	Hs.31968	NM_001042594	ENSG00000128513	POT1	HPOT1	protection of telomeres 1	protein-coding
chr1.2260061.-	chr1	2260061	2260062	-	0	NA	"intron (NM_024848, intron 12 of 13)"	"intron (NM_024848, intron 12 of 13)"	-24039	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chrX.119469567.+	chrX	119469567	119469568	+	0	NA	Intergenic	AluY|SINE|Alu	-24176	NM_001104544	55026	Hs.437563	NM_001104544	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
chr17.65843559.-	chr17	65843559	65843560	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21779	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr19.30169444.-	chr19	30169444	30169445	-	0	NA	Intergenic	Intergenic	-13117	NM_024310	79156	Hs.466383	NM_024310	ENSG00000166289	PLEKHF1	APPD|PHAFIN1|ZFYVE15	"pleckstrin homology domain containing, family F (with FYVE domain) member 1"	protein-coding
chr20.31565664.+	chr20	31565664	31565665	+	0	NA	Intergenic	Intergenic	26575	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr7.936463.+	chr7	936463	936464	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20272	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr7.76022427.-	chr7	76022427	76022428	-	0	NA	"intron (NM_080744, intron 9 of 10)"	CpG	4414	NM_007155	7784	Hs.656137	NM_001110354	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3 (sperm receptor)	protein-coding
chr9.132643188.+	chr9	132643188	132643189	+	0	NA	"3' UTR (NM_001110303, exon 26 of 26)"	"3' UTR (NM_001110303, exon 26 of 26)"	45492	NM_001008563	10868	Hs.5452	NM_001008563	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
chr12.49163952.-	chr12	49163952	49163953	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1868	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr15.41443915.+	chr15	41443915	41443916	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35575	NM_017553	54617	Hs.292949	NM_017553	ENSG00000128908	INO80	INO80A|INOC1|hINO80	INO80 homolog (S. cerevisiae)	protein-coding
chr17.79370741.-	chr17	79370741	79370742	-	0	NA	Intergenic	CpG	2799	NM_001080519	57597	Hs.514580	NM_001080519	ENSG00000171282	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
chr17.38239337.+	chr17	38239337	38239338	+	0	NA	"intron (NM_199334, intron 4 of 8)"	AluY|SINE|Alu	17641	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr18.33709943.-	chr18	33709943	33709944	-	0	NA	promoter-TSS (NM_012319)	promoter-TSS (NM_012319)	-106	NR_040110	55250	Hs.8739	NM_001242875	ENSG00000134759	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
chr1.187585107.+	chr1	187585107	187585108	+	0	NA	Intergenic	SVA_F|Other|Other	787075	NM_024420	5321	Hs.497200	NM_024420	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2-alpha	"phospholipase A2, group IVA (cytosolic, calcium-dependent)"	protein-coding
chr11.66676677.+	chr11	66676677	66676678	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1337	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr10.294529.+	chr10	294529	294530	+	0	NA	"exon (NM_001202464, exon 12 of 14)"	"exon (NM_001202464, exon 12 of 14)"	68595	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr19.48814062.+	chr19	48814062	48814063	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9270	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr19.51373875.+	chr19	51373875	51373876	+	0	NA	Intergenic	Intergenic	-2814	NR_045762	3817	Hs.515560	NM_001002231	ENSG00000167751	KLK2	KLK2A2|hGK-1|hK2	kallikrein-related peptidase 2	protein-coding
chr13.114516569.+	chr13	114516569	114516570	+	0	NA	Intergenic	Intergenic	-2014	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	miscRNA
chr8.8619253.-	chr8	8619253	8619254	-	0	NA	Intergenic	AluJb|SINE|Alu	-59587	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr9.139555598.-	chr9	139555598	139555599	-	0	NA	"intron (NR_046367, intron 1 of 9)"	"intron (NR_046367, intron 1 of 9)"	1781	NM_016215	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr20.42045836.-	chr20	42045836	42045837	-	0	NA	Intergenic	L1M2c|LINE|L1	40668	NM_006275	6431	Hs.743979	NM_006275	ENSG00000124193	SRSF6	B52|SFRS6|SRP55	serine/arginine-rich splicing factor 6	protein-coding
chr14.102576989.+	chr14	102576989	102576990	+	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	-23477	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr16.13534746.+	chr16	13534746	13534747	+	0	NA	Intergenic	AluSc|SINE|Alu	-479268	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr4.26862487.-	chr4	26862487	26862488	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-174	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr8.101661663.+	chr8	101661663	101661664	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	230	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr2.48010458.-	chr2	48010458	48010459	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-237	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr2.43254201.-	chr2	43254201	43254202	-	0	NA	Intergenic	Intergenic	-199544	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr9.719257.-	chr9	719257	719258	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12451	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr1.153961811.+	chr1	153961811	153961812	+	0	NA	Intergenic	AluY|SINE|Alu	-1428	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr5.177808358.+	chr5	177808358	177808359	+	0	NA	"intron (NM_173465, intron 2 of 28)"	"intron (NM_173465, intron 2 of 28)"	-148555	NM_153373	85007	Hs.248746	NM_032921	ENSG00000175309	AGXT2L2	PHLU	alanine-glyoxylate aminotransferase 2-like 2	protein-coding
chr19.27731984.-	chr19	27731984	27731985	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-552864	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr1.3022468.+	chr1	3022468	3022469	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22071	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr5.176292902.+	chr5	176292902	176292903	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33431	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr14.23706386.+	chr14	23706386	23706387	+	0	NA	Intergenic	AluSz|SINE|Alu	48923	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr22.31420912.+	chr22	31420912	31420913	+	0	NA	Intergenic	AluSx|SINE|Alu	55278	NR_002323	55000	Hs.554829	NR_002323		TUG1	LINC00080|NCRNA00080|TI-227H	taurine upregulated 1 (non-protein coding)	miscRNA
chr13.20695020.+	chr13	20695020	20695021	+	0	NA	Intergenic	AluSq2|SINE|Alu	40163	NM_021954	2700	Hs.130313	NM_021954	ENSG00000121743	GJA3	CX46|CZP3	"gap junction protein, alpha 3, 46kDa"	protein-coding
chr9.135978227.+	chr9	135978227	135978228	+	0	NA	"exon (NM_001271774, exon 13 of 18)"	"exon (NM_001271774, exon 13 of 18)"	18410	NM_001271776	5900	Hs.106185	NM_001042368	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
chr20.3148782.-	chr20	3148782	3148783	-	0	NA	"5' UTR (NM_014731, exon 1 of 3)"	"5' UTR (NM_014731, exon 1 of 3)"	-425	NM_014731	9762	Hs.90232	NM_014731	ENSG00000088899	LZTS3	PROSAPIP1|RP5-1187M17.10	"leucine zipper, putative tumor suppressor family member 3"	protein-coding
chr3.46792395.+	chr3	46792395	46792396	+	0	NA	Intergenic	CpG	-6150	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr1.101786809.+	chr1	101786809	101786810	+	0	NA	Intergenic	AluY|SINE|Alu	19642	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr1.114447914.+	chr1	114447914	114447915	+	0	NA	promoter-TSS (NM_006594)	promoter-TSS (NM_006594)	-1	NM_022836	64858	Hs.591412	NM_022836	ENSG00000118655	DCLRE1B	APOLLO|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
chr11.1595021.-	chr11	1595021	1595022	-	0	NA	"intron (NR_021489, intron 1 of 1)"	"intron (NR_021489, intron 1 of 1)"	-1050	NR_021489	338651	Hs.673618	NR_021489	ENSG00000233930	LOC338651	-	uncharacterized LOC338651	miscRNA
chr15.91599283.+	chr15	91599283	91599284	+	0	NA	Intergenic	Intergenic	-33450	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr3.185655809.-	chr3	185655809	185655810	-	0	NA	"5' UTR (NM_004593, exon 1 of 9)"	"5' UTR (NM_004593, exon 1 of 9)"	-115	NM_001243879	6434	Hs.533122	NM_001243879		TRA2B	Htra2-beta|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog (Drosophila)	protein-coding
chr12.131419282.+	chr12	131419282	131419283	+	0	NA	Intergenic	AluSz|SINE|Alu	-19170	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr19.1970553.+	chr19	1970553	1970554	+	0	NA	"intron (NM_001319, intron 2 of 11)"	"intron (NM_001319, intron 2 of 11)"	-16005	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	miscRNA
chr19.3810456.-	chr19	3810456	3810457	-	0	NA	"intron (NM_015174, intron 16 of 18)"	"intron (NM_015174, intron 16 of 18)"	8646	NM_002378	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chr2.232202251.+	chr2	232202251	232202252	+	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	-25168	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr15.23086544.-	chr15	23086544	23086545	-	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	108	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr3.183052343.-	chr3	183052343	183052344	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81311	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr20.48080605.-	chr20	48080605	48080606	-	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	-18576	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr16.57323322.+	chr16	57323322	57323323	+	0	NA	Intergenic	AluY|SINE|Alu	-4738	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
chr2.128430579.+	chr2	128430579	128430580	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2185	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr11.73020398.+	chr11	73020398	73020399	+	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	735	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr22.21983009.+	chr22	21983009	21983010	+	0	NA	"exon (NM_001017964, exon 5 of 5)"	"exon (NM_001017964, exon 5 of 5)"	1331	NM_001017964	150223	Hs.355952	NM_001017965	ENSG00000161179	YDJC	-	YdjC homolog (bacterial)	protein-coding
chr14.61104633.-	chr14	61104633	61104634	-	0	NA	Intergenic	CpG	-11522	NM_005982	6495	Hs.633506	NM_005982		SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
chr7.100808816.-	chr7	100808816	100808817	-	0	NA	promoter-TSS (NM_003378)	promoter-TSS (NM_003378)	-36	NM_003378	7425	Hs.587325	NM_003378	ENSG00000128564	VGF	-	VGF nerve growth factor inducible	protein-coding
chr11.3224471.+	chr11	3224471	3224472	+	0	NA	Intergenic	Intergenic	-15091	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chrX.139583778.+	chrX	139583778	139583779	+	0	NA	Intergenic	Intergenic	3447	NM_005634	6658	Hs.157429	NM_005634	ENSG00000134595	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
chrX.29933151.+	chrX	29933151	29933152	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300524	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr6.52192299.-	chr6	52192299	52192300	-	0	NA	Intergenic	AluSx|SINE|Alu	34627	NM_133367	85315	Hs.239388	NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member VIII	protein-coding
chr14.23701974.+	chr14	23701974	23701975	+	0	NA	Intergenic	SVA_C|Other|Other	-49105	NM_012244	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	"solute carrier family 7 (amino acid transporter light chain, L system), member 8"	protein-coding
chr9.138065630.-	chr9	138065630	138065631	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7825	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr2.178267550.-	chr2	178267550	178267551	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10079	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr17.10895228.+	chr17	10895228	10895229	+	0	NA	Intergenic	AluY|SINE|Alu	-153810	NM_001101387	644139	Hs.553909	NM_001101387		PIRT	-	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding
chr17.28042297.+	chr17	28042297	28042298	+	0	NA	"intron (NM_033389, intron 2 of 14)"	AluY|SINE|Alu	-93856	NM_032854	84940	Hs.143046	NM_032854	ENSG00000167549	CORO6	-	coronin 6	protein-coding
chr19.49254173.+	chr19	49254173	49254174	+	0	NA	"exon (NM_000148, exon 4 of 4)"	"exon (NM_000148, exon 4 of 4)"	-4007	NM_182575	284359	Hs.400688	NM_182575	ENSG00000182264	IZUMO1	IZUMO	izumo sperm-egg fusion 1	protein-coding
chr16.70148585.-	chr16	70148585	70148586	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1056	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr3.56618855.+	chr3	56618855	56618856	+	0	NA	"intron (NR_024460, intron 7 of 17)"	SVA_C|Other|Other	27671	NM_001012506	285331	Hs.476399	NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
chr19.52640496.+	chr19	52640496	52640497	+	0	NA	"intron (NM_178523, intron 1 of 3)"	AluY|SINE|Alu	2695	NM_178523	90317	Hs.731969	NM_178523		ZNF616	-	zinc finger protein 616	protein-coding
chr4.5892142.-	chr4	5892142	5892143	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1827	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr7.130332855.-	chr7	130332855	130332856	-	0	NA	"intron (NM_012133, intron 5 of 12)"	AluSc8|SINE|Alu	-20743	NM_012133	26958	Hs.6421	NM_012133		COPG2	2-COP	"coatomer protein complex, subunit gamma 2"	protein-coding
chr3.58291991.-	chr3	58291991	58291992	-	0	NA	promoter-TSS (NR_049758)	promoter-TSS (NR_049758)	-19	NR_049757	11102	Hs.700016	NM_001098783	ENSG00000163684	RPP14	P14	ribonuclease P/MRP 14kDa subunit	protein-coding
chr1.200885612.-	chr1	200885612	200885613	-	0	NA	TTS (NM_018265)	TTS (NM_018265)	-21663	NM_001142569	55765	Hs.518997	NM_001142569	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
chr8.1808475.-	chr8	1808475	1808476	-	0	NA	"intron (NM_014629, intron 4 of 28)"	"intron (NM_014629, intron 4 of 28)"	-36326	NM_014629	9639	Hs.98594	NM_014629	ENSG00000104728	ARHGEF10	GEF10	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding
chr2.3284022.+	chr2	3284022	3284023	+	0	NA	"intron (NM_003310, intron 3 of 8)"	"intron (NM_003310, intron 3 of 8)"	97631	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr12.131191642.-	chr12	131191642	131191643	-	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	-132177	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr21.47403503.-	chr21	47403503	47403504	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1840	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr5.127873810.+	chr5	127873810	127873811	+	0	NA	promoter-TSS (NM_001999)	promoter-TSS (NM_001999)	-75	NM_001999	2201	Hs.519294	NM_001999	ENSG00000138829	FBN2	CCA|DA9	fibrillin 2	protein-coding
chr2.10952976.-	chr2	10952976	10952977	-	0	NA	promoter-TSS (NM_005742)	promoter-TSS (NM_005742)	16	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr22.38336373.-	chr22	38336373	38336374	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13281	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr9.130734350.+	chr9	130734350	130734351	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8462	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr7.1542236.-	chr7	1542236	1542237	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1782	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr18.73357767.-	chr18	73357767	73357768	-	0	NA	Intergenic	L2|LINE|L2	218178	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr1.151742034.-	chr1	151742034	151742035	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2903	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr7.13901789.-	chr7	13901789	13901790	-	0	NA	Intergenic	AluY|SINE|Alu	-124350	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr17.70906185.-	chr17	70906185	70906186	-	0	NA	"intron (NM_139177, intron 5 of 9)"	AluY|SINE|Alu	-182668	NM_139177	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr6.56972729.+	chr6	56972729	56972730	+	0	NA	"3' UTR (NM_001257273, exon 4 of 4)"	"3' UTR (NM_001257273, exon 4 of 4)"	17901	NM_015555	26036	Hs.705485	NM_001031623	ENSG00000112200	ZNF451	COASTER|dJ417I1.1	zinc finger protein 451	protein-coding
chr7.36192842.-	chr7	36192842	36192843	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	-6	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr1.160239901.+	chr1	160239901	160239902	+	0	NA	Intergenic	AluJo|SINE|Alu	-7551	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr3.32726823.-	chr3	32726823	32726824	-	0	NA	"non-coding (NR_046352, exon 1 of 17)"	"non-coding (NR_046352, exon 1 of 17)"	-186	NM_015442	25904	Hs.444851	NM_001256741	ENSG00000182973	CNOT10	-	"CCR4-NOT transcription complex, subunit 10"	protein-coding
chr12.49479727.-	chr12	49479727	49479728	-	0	NA	Intergenic	AluSq|SINE|Alu	-8875	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chr2.39267434.+	chr2	39267434	39267435	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79949	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr11.3224477.+	chr11	3224477	3224478	+	0	NA	Intergenic	Intergenic	-15085	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr15.41687820.+	chr15	41687820	41687821	+	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	6838	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr2.10916539.+	chr2	10916539	10916540	+	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	36421	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr19.9311338.-	chr19	9311338	9311339	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14209	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr19.19625616.+	chr19	19625616	19625617	+	0	NA	"exon (NM_032037, exon 1 of 1)"	"exon (NM_032037, exon 1 of 1)"	853	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr1.54888744.-	chr1	54888744	54888745	-	0	NA	Intergenic	AluY|SINE|Alu	16652	NM_001009955	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr6.170548021.+	chr6	170548021	170548022	+	0	NA	Intergenic	Intergenic	23636	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr16.2587873.-	chr16	2587873	2587874	-	0	NA	promoter-TSS (NM_001261816)	promoter-TSS (NM_001261816)	92	NM_031268	5170	Hs.459691	NM_001261816	ENSG00000140992	PDPK1	PDK1|PDPK2|PRO0461	3-phosphoinositide dependent protein kinase-1	protein-coding
chr7.35198260.-	chr7	35198260	35198261	-	0	NA	"intron (NR_002833, intron 6 of 21)"	AluY|SINE|Alu	-27514	NR_002833	554236	Hs.594815	NR_002833		DPY19L2P1	-	dpy-19-like 2 pseudogene 1 (C. elegans)	pseudo
chr9.92014674.-	chr9	92014674	92014675	-	0	NA	"intron (NM_001142287, intron 6 of 20)"	AluSx1|SINE|Alu	-79937	NM_006378	10507	Hs.494406	NM_182635	ENSG00000187764	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D"	protein-coding
chr5.129219886.-	chr5	129219886	129219887	-	0	NA	Intergenic	AluY|SINE|Alu	20637	NM_175856	337876	Hs.213137	NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
chr4.1222161.+	chr4	1222161	1222162	+	0	NA	"intron (NM_001012614, intron 3 of 9)"	"intron (NM_001012614, intron 3 of 9)"	-19411	NR_024569	100130872	Hs.302963	NR_024569		LOC100130872	-	uncharacterized LOC100130872	miscRNA
chr1.40953683.+	chr1	40953683	40953684	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10381	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr11.111190867.+	chr11	111190867	111190868	+	0	NA	Intergenic	AluYa5|SINE|Alu	-20328	NR_034154	399948	Hs.729225	NM_207429	ENSG00000196167	C11orf92	-	chromosome 11 open reading frame 92	miscRNA
chr6.141000362.+	chr6	141000362	141000363	+	0	NA	Intergenic	AluY|SINE|Alu	-4589	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr4.54164344.-	chr4	54164344	54164345	-	0	NA	"intron (NM_152540, intron 3 of 8)"	L1PA4|LINE|L1	-67898	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr1.151742024.-	chr1	151742024	151742025	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2893	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr2.9894286.-	chr2	9894286	9894287	-	0	NA	Intergenic	Intergenic	89285	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr19.11909250.+	chr19	11909250	11909251	+	0	NA	promoter-TSS (NM_152356)	promoter-TSS (NM_152356)	-141	NM_152356	126069	Hs.631634	NM_152356	ENSG00000177599	ZNF491	-	zinc finger protein 491	protein-coding
chr1.179051071.-	chr1	179051071	179051072	-	0	NA	promoter-TSS (NM_022371)	promoter-TSS (NM_022371)	41	NM_022371	64222	Hs.584957	NM_022371		TOR3A	ADIR|ADIR2	"torsin family 3, member A"	protein-coding
chr12.20930587.-	chr12	20930587	20930588	-	0	NA	Intergenic	LTR12C|LTR|ERV1	33051	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr5.1686215.-	chr5	1686215	1686216	-	0	NA	Intergenic	Intergenic	-22768	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	miscRNA
chr15.93426559.+	chr15	93426559	93426560	+	0	NA	promoter-TSS (NR_037602)	promoter-TSS (NR_037602)	33	NR_037602	100507217	Hs.622504	NR_037600		LOC100507217	-	uncharacterized LOC100507217	miscRNA
chrY.9930620.-	chrY	9930620	9930621	-	0	NA	Intergenic	CpG	-182213	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr13.23713109.+	chr13	23713109	23713110	+	0	NA	Intergenic	AluY|SINE|Alu	-41951	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr2.204121191.+	chr2	204121191	204121192	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18027	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr6.64268032.+	chr6	64268032	64268033	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13888	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr6.168476178.+	chr6	168476178	168476179	+	0	NA	"intron (NM_024919, intron 1 of 10)"	"intron (NM_024919, intron 1 of 10)"	354	NM_001122841	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr11.28078816.+	chr11	28078816	28078817	+	0	NA	TTS (NR_030341)	TTS (NR_030341)	454	NR_030341	693195		NR_030341	ENSG00000207874	MIR610	MIRN610|hsa-mir-610	microRNA 610	miscRNA
chr8.5296102.+	chr8	5296102	5296103	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-443774	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr7.117513418.-	chr7	117513418	117513419	-	0	NA	"exon (NM_033427, exon 1 of 23)"	"exon (NM_033427, exon 1 of 23)"	-143	NM_033427	83992	Hs.592285	NM_033427	ENSG00000077063	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
chr9.12352802.-	chr9	12352802	12352803	-	0	NA	Intergenic	AluY|SINE|Alu	340584	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr6.65337797.+	chr6	65337797	65337798	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673514	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr9.12352820.-	chr9	12352820	12352821	-	0	NA	Intergenic	AluY|SINE|Alu	340566	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr4.184656687.-	chr4	184656687	184656688	-	0	NA	Intergenic	SVA_E|Other|Other	-76267	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY	trafficking protein particle complex 11	protein-coding
chr1.109995553.+	chr1	109995553	109995554	+	0	NA	Intergenic	AluY|SINE|Alu	-13547	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr8.23131059.+	chr8	23131059	23131060	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14553	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr15.101457916.+	chr15	101457916	101457917	+	0	NA	Intergenic	Intergenic	-1544	NM_024652	79705	Hs.407918	NM_024652	ENSG00000154237	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
chr11.69451980.-	chr11	69451980	69451981	-	0	NA	Intergenic	CpG	3893	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr4.153456920.+	chr4	153456920	153456921	+	0	NA	promoter-TSS (NM_033632)	promoter-TSS (NM_033632)	-496	NR_033797	54553	Hs.142307	NR_033797	ENSG00000268471	DKFZP434I0714	-	uncharacterized protein DKFZP434I0714	miscRNA
chr2.236999637.+	chr2	236999637	236999638	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	77015	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr7.45750534.-	chr7	45750534	45750535	-	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	-58083	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr8.86574404.+	chr8	86574404	86574405	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	338	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr3.22099194.-	chr3	22099194	22099195	-	0	NA	Intergenic	AluSx|SINE|Alu	306378	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr17.7561718.-	chr17	7561718	7561719	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7464	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr10.94333876.-	chr10	94333876	94333877	-	0	NA	promoter-TSS (NM_004969)	promoter-TSS (NM_004969)	24	NM_004969	3416	Hs.500546	NM_001165946	ENSG00000119912	IDE	INSULYSIN	insulin-degrading enzyme	protein-coding
chr1.7739307.+	chr1	7739307	7739308	+	0	NA	"intron (NM_015215, intron 11 of 22)"	"intron (NM_015215, intron 11 of 22)"	-92022	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr6.1611842.-	chr6	1611842	1611843	-	0	NA	"exon (NM_001453, exon 1 of 1)"	"exon (NM_001453, exon 1 of 1)"	-1161	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr7.155246425.-	chr7	155246425	155246426	-	0	NA	Intergenic	CpG	4399	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr13.25859723.-	chr13	25859723	25859724	-	0	NA	"intron (NM_004685, intron 1 of 13)"	AluSx1|SINE|Alu	-1981	NM_004685	9107	Hs.643702	NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
chr6.114067429.-	chr6	114067429	114067430	-	0	NA	Intergenic	AluY|SINE|Alu	111098	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr17.7246101.-	chr17	7246101	7246102	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6253	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr1.98510976.+	chr1	98510976	98510977	+	0	NA	promoter-TSS (NR_039604)	promoter-TSS (NR_039604)	-69	NR_039604	100616452		NR_039604	ENSG00000265779	MIR2682	-	microRNA 2682	miscRNA
chr4.163164032.+	chr4	163164032	163164033	+	0	NA	Intergenic	AluY|SINE|Alu	-78846	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr10.88916117.+	chr10	88916117	88916118	+	0	NA	"intron (NM_019054, intron 3 of 8)"	AluSg|SINE|Alu	61164	NM_019054	54537	Hs.500419	NM_019054	ENSG00000122376	FAM35A	FAM35A1|bA163M19.1	"family with sequence similarity 35, member A"	protein-coding
chr17.57868971.-	chr17	57868971	57868972	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49656	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr20.43342070.-	chr20	43342070	43342071	-	0	NA	Intergenic	AluSx|SINE|Alu	1815	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr19.1467557.+	chr19	1467557	1467558	+	0	NA	"exon (NM_005883, exon 15 of 15)"	"exon (NM_005883, exon 15 of 15)"	11671	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
chr3.38106446.+	chr3	38106446	38106447	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25750	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr4.1995615.+	chr4	1995615	1995616	+	0	NA	"intron (NM_005663, intron 1 of 10)"	AluSq2|SINE|Alu	-7411	NR_030641	100126332		NR_030641		MIR943	MIRN943|hsa-mir-943	microRNA 943	miscRNA
chr3.26495149.-	chr3	26495149	26495150	-	0	NA	Intergenic	AluY|SINE|Alu	169151	NM_052953	116135	Hs.517868	NM_052953	ENSG00000179796	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
chr1.169305361.-	chr1	169305361	169305362	-	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	-31825	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr4.131425817.-	chr4	131425817	131425818	-	0	NA	Intergenic	AluY|SINE|Alu	-1408535	NM_001099783	132321	Hs.567679	NM_001099783	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
chr2.202898666.-	chr2	202898666	202898667	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	644	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr19.10587517.+	chr19	10587517	10587518	+	0	NA	Intergenic	AluSq2|SINE|Alu	23884	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr9.34329751.+	chr9	34329751	34329752	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	247	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr16.68158333.-	chr16	68158333	68158334	-	0	NA	"intron (NM_004555, intron 2 of 10)"	AluY|SINE|Alu	-39064	NM_004555	4775	Hs.436585	NM_004555	ENSG00000072736	NFATC3	NFAT4|NFATX	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3"	protein-coding
chr3.29288097.+	chr3	29288097	29288098	+	0	NA	Intergenic	AluY|SINE|Alu	-34706	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr19.4141899.-	chr19	4141899	4141900	-	0	NA	Intergenic	AluY|SINE|Alu	11699	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr12.132372617.-	chr12	132372617	132372618	-	0	NA	Intergenic	AluSx|SINE|Alu	6662	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr19.1045734.+	chr19	1045734	1045735	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5632	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr17.4900508.-	chr17	4900508	4900509	-	0	NA	promoter-TSS (NM_006612)	promoter-TSS (NM_006612)	-397	NM_213726	388324	Hs.658926	NM_001167985	ENSG00000196388	INCA1	-	"inhibitor of CDK, cyclin A1 interacting protein 1"	protein-coding
chr14.23835157.+	chr14	23835157	23835158	+	0	NA	promoter-TSS (NM_001277174)	promoter-TSS (NM_001277174)	-315	NM_032459	10278	Hs.24587	NM_001277174	ENSG00000100842	EFS	CAS3|CASS3|EFS1|EFS2|HEFS|SIN	embryonal Fyn-associated substrate	protein-coding
chr7.3456551.+	chr7	3456551	3456552	+	0	NA	"intron (NM_152744, intron 1 of 44)"	AluSq|SINE|Alu	115471	NM_152744	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr2.32250687.+	chr2	32250687	32250688	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14157	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr9.129229310.+	chr9	129229310	129229311	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56527	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr19.17812202.+	chr19	17812202	17812203	+	0	NA	Intergenic	AluY|SINE|Alu	-13194	NM_001080421	23025	Hs.164502	NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A (C. elegans)	protein-coding
chr9.110671329.-	chr9	110671329	110671330	-	0	NA	Intergenic	AluY|SINE|Alu	419282	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
chr7.95234863.-	chr7	95234863	95234864	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8938	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr21.37627714.+	chr21	37627714	37627715	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64773	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr15.42139654.-	chr15	42139654	42139655	-	0	NA	TTS (NM_016642)	TTS (NM_016642)	-8643	NM_001114633	100137049	Hs.198161	NM_001114633	ENSG00000168970	PLA2G4B	HsT16992|cPLA2-beta	"phospholipase A2, group IVB (cytosolic)"	protein-coding
chr19.38836230.+	chr19	38836230	38836231	+	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	9787	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr11.134624856.-	chr11	134624856	134624857	-	0	NA	Intergenic	Intergenic	-318480	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr10.35559786.+	chr10	35559786	35559787	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23833	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr7.95234862.+	chr7	95234862	95234863	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8937	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr22.38498802.-	chr22	38498802	38498803	-	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	-7874	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr11.89900027.-	chr11	89900027	89900028	-	0	NA	"intron (NM_005467, intron 11 of 18)"	"intron (NM_005467, intron 11 of 18)"	-32209	NM_005467	10003	Hs.503560	NM_005467	ENSG00000077616	NAALAD2	GCPIII|GPCIII|NAADALASE2|NAALADASE2	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding
chr17.9202893.-	chr17	9202893	9202894	-	0	NA	"intron (NM_004853, intron 7 of 7)"	AluY|SINE|Alu	-276382	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
chr2.87624384.-	chr2	87624384	87624385	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	130590	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chrX.67548259.-	chrX	67548259	67548260	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105040	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr12.118079901.+	chr12	118079901	118079902	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280294	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr11.133788130.+	chr11	133788130	133788131	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16495	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr3.73614852.+	chr3	73614852	73614853	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59220	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr2.239047359.+	chr2	239047359	239047360	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-4	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr9.139907801.+	chr9	139907801	139907802	+	0	NA	"intron (NM_001606, intron 29 of 48)"	"intron (NM_001606, intron 29 of 48)"	-14115	NM_207511	401563	Hs.522509	NM_207511	ENSG00000180539	C9orf139	-	chromosome 9 open reading frame 139	protein-coding
chr1.159751050.-	chr1	159751050	159751051	-	0	NA	"exon (NM_017823, exon 2 of 3)"	"exon (NM_017823, exon 2 of 3)"	-291	NM_017823	54935	Hs.425801	NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|MOSP|RP11-190A12.1|VHZ	dual specificity phosphatase 23	protein-coding
chr16.68889465.+	chr16	68889465	68889466	+	0	NA	"intron (NM_024562, intron 1 of 17)"	AluSx|SINE|Alu	11956	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
chrX.112187612.-	chrX	112187612	112187613	-	0	NA	Intergenic	AluY|SINE|Alu	103569	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr11.12696194.+	chr11	12696194	12696195	+	0	NA	"5' UTR (NM_021961, exon 1 of 13)"	"5' UTR (NM_021961, exon 1 of 13)"	225	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chr10.123791041.-	chr10	123791041	123791042	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42352	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr18.41408409.-	chr18	41408409	41408410	-	0	NA	Intergenic	AluSx3|SINE|Alu	550794	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr7.66017146.+	chr7	66017146	66017147	+	0	NA	Intergenic	AluSx1|SINE|Alu	26352	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr17.73893124.-	chr17	73893124	73893125	-	0	NA	promoter-TSS (NM_173547)	promoter-TSS (NM_173547)	40	NM_001256124	201292	Hs.189823	NM_001256124	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
chr19.10408204.-	chr19	10408204	10408205	-	0	NA	TTS (NM_003259)	TTS (NM_003259)	-7549	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr5.27408039.+	chr5	27408039	27408040	+	0	NA	Intergenic	AluY|SINE|Alu	-64360	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr4.41869456.-	chr4	41869456	41869457	-	0	NA	Intergenic	CpG	67681	NM_018126	55161	Hs.31082	NM_018126	ENSG00000109133	TMEM33	1600019D15Rik|SHINC3	transmembrane protein 33	protein-coding
chr19.14156292.+	chr19	14156292	14156293	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13679	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr1.210000887.-	chr1	210000887	210000888	-	0	NA	promoter-TSS (NM_014388)	promoter-TSS (NM_014388)	425	NM_014388	27042	Hs.194754	NM_014388		DIEXF	C1orf107|DEF|DJ434O14.5|UTP25	digestive organ expansion factor homolog (zebrafish)	protein-coding
chr13.21766675.-	chr13	21766675	21766676	-	0	NA	Intergenic	AluY|SINE|Alu	15934	NM_145061	221150	Hs.88523	NM_001166017	ENSG00000165480	SKA3	C13orf3|RAMA1	spindle and kinetochore associated complex subunit 3	protein-coding
chr6.4780648.+	chr6	4780648	4780649	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3968	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr2.31691884.+	chr2	31691884	31691885	+	0	NA	Intergenic	AluY|SINE|Alu	-54273	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr19.35644872.-	chr19	35644872	35644873	-	0	NA	promoter-TSS (NM_144779)	promoter-TSS (NM_144779)	753	NM_014164	53827	Hs.333418	NM_001164605	ENSG00000089327	FXYD5	DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
chr15.42300398.-	chr15	42300398	42300399	-	0	NA	"intron (NM_001206670, intron 2 of 19)"	"intron (NM_001206670, intron 2 of 19)"	35643	NM_139265	30844	Hs.143703	NM_139265	ENSG00000103966	EHD4	PAST4	EH-domain containing 4	protein-coding
chr14.105542937.+	chr14	105542937	105542938	+	0	NA	Intergenic	Intergenic	-11183	NM_013345	29933	Hs.532504	NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
chrX.153736341.+	chrX	153736341	153736342	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8225	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr2.128430604.+	chr2	128430604	128430605	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2160	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr10.94333877.-	chr10	94333877	94333878	-	0	NA	promoter-TSS (NM_004969)	promoter-TSS (NM_004969)	25	NM_004969	3416	Hs.500546	NM_001165946	ENSG00000119912	IDE	INSULYSIN	insulin-degrading enzyme	protein-coding
chr8.142536787.+	chr8	142536787	142536788	+	0	NA	Intergenic	Intergenic	-19457	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr12.67941916.-	chr12	67941916	67941917	-	0	NA	Intergenic	AluY|SINE|Alu	100596	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr7.157967619.+	chr7	157967619	157967620	+	0	NA	"intron (NM_130842, intron 4 of 21)"	"intron (NM_130842, intron 4 of 21)"	320342	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr9.11197026.-	chr9	11197026	11197027	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584303	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr17.27070059.-	chr17	27070059	27070060	-	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	964	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr12.56579280.-	chr12	56579280	56579281	-	0	NA	"intron (NM_003075, intron 3 of 27)"	AluSx1|SINE|Alu	-4071	NM_139067	6601	Hs.632717	NM_001130420		SMARCC2	BAF170|CRACC2|Rsc8	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2"	protein-coding
chr2.159651795.+	chr2	159651795	159651796	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-34	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr19.34394384.+	chr19	34394384	34394385	+	0	NA	Intergenic	AluSx1|SINE|Alu	106633	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr18.66365979.-	chr18	66365979	66365980	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16374	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr9.40501053.-	chr9	40501053	40501054	-	0	NA	Intergenic	AluY|SINE|Alu	199238	NM_001083124	727830	Hs.632078	NM_001083124	ENSG00000147926	SPATA31A3	FAM75A3	"SPATA31 subfamily A, member 3"	protein-coding
chr15.52029767.-	chr15	52029767	52029768	-	0	NA	"exon (NM_153374, exon 1 of 3)"	"exon (NM_153374, exon 1 of 3)"	-553	NM_153374	256586	Hs.603629	NM_001143917	ENSG00000140280	LYSMD2	-	"LysM, putative peptidoglycan-binding, domain containing 2"	protein-coding
chr20.60872140.+	chr20	60872140	60872141	+	0	NA	TTS (NM_144498)	TTS (NM_144498)	-5887	NM_175573	11047	Hs.90107	NM_007002	ENSG00000130706	ADRM1	ARM1|GP110|Rpn13	adhesion regulating molecule 1	protein-coding
chr4.65343996.+	chr4	65343996	65343997	+	0	NA	Intergenic	AluY|SINE|Alu	-68818	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr18.38415899.-	chr18	38415899	38415900	-	0	NA	Intergenic	AluY|SINE|Alu	-684662	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr18.77244863.+	chr18	77244863	77244864	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84537	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr4.5981888.+	chr4	5981888	5981889	+	0	NA	Intergenic	Intergenic	-56833	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	-	microRNA 378d-1	miscRNA
chr14.102109473.-	chr14	102109473	102109474	-	0	NA	Intergenic	AluY|SINE|Alu	-81785	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr4.1689738.+	chr4	1689738	1689739	+	0	NA	Intergenic	AluY|SINE|Alu	-3750	NM_001174070	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr3.127175504.-	chr3	127175504	127175505	-	0	NA	Intergenic	Intergenic	-134098	NM_001136053	131601	Hs.6418	NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	"transmembrane protein, adipocyte asscociated 1"	protein-coding
chr8.52446926.+	chr8	52446926	52446927	+	0	NA	"intron (NM_144651, intron 4 of 22)"	SVA_F|Other|Other	275079	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr20.45571518.+	chr20	45571518	45571519	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48255	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr7.155246296.+	chr7	155246296	155246297	+	0	NA	Intergenic	Intergenic	-4528	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr6.42510270.+	chr6	42510270	42510271	+	0	NA	Intergenic	AluY|SINE|Alu	-21490	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr16.89034084.-	chr16	89034084	89034085	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9420	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr18.63211139.-	chr18	63211139	63211140	-	0	NA	Intergenic	AluY|SINE|Alu	206349	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr7.2544945.-	chr7	2544945	2544946	-	0	NA	Intergenic	Intergenic	7218	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr21.11107109.+	chr21	11107109	11107110	+	0	NA	Intergenic	CpG	-8172	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr5.40801251.-	chr5	40801251	40801252	-	0	NA	Intergenic	SVA_E|Other|Other	2954	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr1.99544247.-	chr1	99544247	99544248	-	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	73798	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr17.61686672.+	chr17	61686672	61686673	+	0	NA	TTS (NM_016360)	TTS (NM_016360)	8441	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
chr14.105736151.-	chr14	105736151	105736152	-	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	20410	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr11.133763843.+	chr11	133763843	133763844	+	0	NA	Intergenic	AluY|SINE|Alu	4633	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr18.48196260.-	chr18	48196260	48196261	-	0	NA	"intron (NM_002747, intron 2 of 5)"	AluY|SINE|Alu	-109776	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr2.34374935.+	chr2	34374935	34374936	+	0	NA	Intergenic	AluY|SINE|Alu	-421651	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr5.694002.+	chr5	694002	694003	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-492	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr6.64103953.+	chr6	64103953	64103954	+	0	NA	Intergenic	AluSx|SINE|Alu	-74071	NM_001143940	51557	Hs.149585	NM_001143940	ENSG00000146166	LGSN	GLULD1|LGS	"lengsin, lens protein with glutamine synthetase domain"	protein-coding
chr10.89762161.+	chr10	89762161	89762162	+	0	NA	Intergenic	AluSq2|SINE|Alu	138966	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
chr17.4708679.+	chr17	4708679	4708680	+	0	NA	Intergenic	AluSp|SINE|Alu	-1717	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chrM.6536.+	chrM	6536	6537	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.205426087.-	chr1	205426087	205426088	-	0	NA	Intergenic	CpG	8561	NR_029893	442891		NR_029893	ENSG00000199059	MIR135B	MIRN135B	microRNA 135b	miscRNA
chr17.1226146.+	chr17	1226146	1226147	+	0	NA	Intergenic	AluSx|SINE|Alu	43189	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr7.2716298.-	chr7	2716298	2716299	-	0	NA	Intergenic	Intergenic	2865	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr9.95546676.+	chr9	95546676	95546677	+	0	NA	Intergenic	AluSq2|SINE|Alu	-19593	NM_001003800	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr2.10198562.+	chr2	10198562	10198563	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14190	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr16.88387038.+	chr16	88387038	88387039	+	0	NA	Intergenic	L2b|LINE|L2	-106841	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr2.91874378.+	chr2	91874378	91874379	+	0	NA	Intergenic	CpG	-26403	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr19.2187828.-	chr19	2187828	2187829	-	0	NA	"intron (NM_032482, intron 3 of 27)"	AluY|SINE|Alu	-23680	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr4.26862282.-	chr4	26862282	26862283	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	31	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr12.75694245.-	chr12	75694245	75694246	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29591	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chrX.142322490.-	chrX	142322490	142322491	-	0	NA	Intergenic	AluY|SINE|Alu	-208786	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	"SPANX family, member N4"	protein-coding
chr12.65041483.+	chr12	65041483	65041484	+	0	NA	"intron (NR_040718, intron 1 of 3)"	AluSx3|SINE|Alu	-25098	NR_037515	100500856		NR_037515		MIR548Z	-	microRNA 548z	miscRNA
chr1.114355110.+	chr1	114355110	114355111	+	0	NA	promoter-TSS (NM_018364)	promoter-TSS (NM_018364)	-40	NM_018364	54665	Hs.486285	NM_018364	ENSG00000081019	RSBN1	ROSBIN|RP11-324J2.1	round spermatid basic protein 1	protein-coding
chr17.27070056.+	chr17	27070056	27070057	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-967	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr2.112443492.-	chr2	112443492	112443493	-	0	NA	Intergenic	AluY|SINE|Alu	190800	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	LOC541471	-	uncharacterized LOC541471	miscRNA
chr17.1226142.+	chr17	1226142	1226143	+	0	NA	Intergenic	AluSx|SINE|Alu	43185	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr12.96314665.+	chr12	96314665	96314666	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21763	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr1.89793790.-	chr1	89793790	89793791	-	0	NA	Intergenic	AluYa5|SINE|Alu	35646	NM_198460	163351	Hs.254338	NM_198460		GBP6	-	"guanylate binding protein family, member 6"	protein-coding
chr21.31598718.+	chr21	31598718	31598719	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10249	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr22.30781336.+	chr22	30781336	30781337	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1966	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr4.17513837.+	chr4	17513837	17513838	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	20	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr2.85702018.-	chr2	85702018	85702019	-	0	NA	Intergenic	AluSp|SINE|Alu	-40100	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr9.105365762.-	chr9	105365762	105365763	-	0	NA	Intergenic	SVA_B|Other|Other	391831	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr11.638939.+	chr11	638939	638940	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1634	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr15.68871019.-	chr15	68871019	68871020	-	0	NA	promoter-TSS (NM_006091)	promoter-TSS (NM_006091)	289	NM_006091	10391	Hs.551213	NM_001190456	ENSG00000103647	CORO2B	CLIPINC	"coronin, actin binding protein, 2B"	protein-coding
chr13.47509472.+	chr13	47509472	47509473	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-38261	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr2.38825094.-	chr2	38825094	38825095	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5084	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chrM.6388.+	chrM	6388	6389	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.219186476.+	chr2	219186476	219186477	+	0	NA	"intron (NM_015488, intron 2 of 9)"	AluSc8|SINE|Alu	-1426	NM_022572	25953	Hs.98475	NM_001077399	ENSG00000127838	PNKD	BRP17|DYT8|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2	paroxysmal nonkinesigenic dyskinesia	protein-coding
chr7.64198974.+	chr7	64198974	64198975	+	0	NA	Intergenic	SVA_D|Other|Other	-55792	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr17.43025026.-	chr17	43025026	43025027	-	0	NA	promoter-TSS (NM_001264573)	promoter-TSS (NM_001264573)	-53	NM_001265577	146909	Hs.135094	NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
chr16.53537429.-	chr16	53537429	53537430	-	0	NA	promoter-TSS (NM_001012398)	promoter-TSS (NM_001012398)	259	NM_022476	64400	Hs.380897	NM_001012398	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
chrX.144902912.+	chrX	144902912	144902913	+	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	46	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr12.56394834.-	chr12	56394834	56394835	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3791	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr20.55221014.-	chr20	55221014	55221015	-	0	NA	Intergenic	AluY|SINE|Alu	-16656	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr11.9243386.+	chr11	9243386	9243387	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43487	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr22.22259602.-	chr22	22259602	22259603	-	0	NA	Intergenic	AluSq2|SINE|Alu	37632	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr17.76799758.-	chr17	76799758	76799759	-	0	NA	"exon (NM_025090, exon 16 of 20)"	"exon (NM_025090, exon 16 of 20)"	21382	NM_004762	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
chr11.7603258.-	chr11	7603258	7603259	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15159	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr2.87642253.+	chr2	87642253	87642254	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-112721	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr1.46016448.+	chr1	46016448	46016449	+	0	NA	promoter-TSS (NM_001202413)	promoter-TSS (NM_001202413)	-7	NM_006066	10327	Hs.721160	NM_001202414	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3	"aldo-keto reductase family 1, member A1 (aldehyde reductase)"	protein-coding
chr20.5213523.-	chr20	5213523	5213524	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81492	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr16.89034196.+	chr16	89034196	89034197	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9308	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr12.34501257.-	chr12	34501257	34501258	-	0	NA	Intergenic	GSATII|Satellite|centr	-326041	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr4.143727184.-	chr4	143727184	143727185	-	0	NA	"intron (NM_001101669, intron 1 of 25)"	AluYk4|SINE|Alu	-40420	NM_003866	8821	Hs.531403	NM_001101669	ENSG00000109452	INPP4B	-	"inositol polyphosphate-4-phosphatase, type II, 105kDa"	protein-coding
chr12.75694238.-	chr12	75694238	75694239	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29598	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr13.101326968.+	chr13	101326968	101326969	+	0	NA	"intron (NM_032813, intron 1 of 18)"	CpG	135	NM_001079669	84899	Hs.190983	NM_001079669	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
chr11.44361799.+	chr11	44361799	44361800	+	0	NA	Intergenic	AluJb|SINE|Alu	-30083	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr14.105618925.+	chr14	105618925	105618926	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16236	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr5.2751872.+	chr5	2751872	2751873	+	0	NA	promoter-TSS (NM_178569)	promoter-TSS (NM_178569)	-103	NM_001134222	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr15.89714250.-	chr15	89714250	89714251	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50672	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr16.70356514.-	chr16	70356514	70356515	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23452	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr3.8721157.-	chr3	8721157	8721158	-	0	NA	Intergenic	Intergenic	27393	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr2.44536155.+	chr2	44536155	44536156	+	0	NA	"intron (NM_000341, intron 7 of 9)"	AluY|SINE|Alu	33558	NM_000341	6519	Hs.112916	NM_000341		SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	"solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1"	protein-coding
chr18.77244878.-	chr18	77244878	77244879	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84552	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr10.125228161.+	chr10	125228161	125228162	+	0	NA	Intergenic	AluY|SINE|Alu	-197710	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr16.70207308.+	chr16	70207308	70207309	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-620	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr17.73615806.-	chr17	73615806	73615807	-	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	13708	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr7.56109508.-	chr7	56109508	56109509	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9760	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr17.35829285.-	chr17	35829285	35829286	-	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	20666	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chr10.102891268.-	chr10	102891268	102891269	-	0	NA	promoter-TSS (NM_001085398)	promoter-TSS (NM_001085398)	-207	NM_005521	3195	Hs.89583	NM_001195517	ENSG00000107807	TLX1	HOX11|TCL3	T-cell leukemia homeobox 1	protein-coding
chr11.46730235.+	chr11	46730235	46730236	+	0	NA	Intergenic	AluSz|SINE|Alu	7591	NM_001184751	79797	Hs.656931	NM_001184751	ENSG00000175213	ZNF408	-	zinc finger protein 408	protein-coding
chr1.114299511.+	chr1	114299511	114299512	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2266	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr7.33164230.-	chr7	33164230	33164231	-	0	NA	Intergenic	AluYf5|SINE|Alu	4922	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr2.27588400.+	chr2	27588400	27588401	+	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	4519	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr5.75799108.+	chr5	75799108	75799109	+	0	NA	"intron (NM_006633, intron 2 of 35)"	AluSq|SINE|Alu	99959	NM_006633	10788	Hs.291030	NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
chr5.131817905.+	chr5	131817905	131817906	+	0	NA	"3' UTR (NM_002198, exon 10 of 10)"	"3' UTR (NM_002198, exon 10 of 10)"	8560	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr6.39692994.+	chr6	39692994	39692995	+	0	NA	"intron (NM_145027, intron 1 of 22)"	GC_rich|Low_complexity|Low_complexity	187	NM_145027	221458	Hs.588202	NM_145027	ENSG00000164627	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
chr18.29434843.+	chr18	29434843	29434844	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88248	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr4.163164005.-	chr4	163164005	163164006	-	0	NA	Intergenic	AluY|SINE|Alu	78819	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr12.122177845.+	chr12	122177845	122177846	+	0	NA	"intron (NM_001080825, intron 1 of 11)"	AluSx1|SINE|Alu	27187	NM_001080825	144404	Hs.644504	NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
chr15.34872264.+	chr15	34872264	34872265	+	0	NA	"intron (NR_027410, intron 2 of 23)"	L2a|LINE|L2	3507	NR_027410	440270	Hs.720151	NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	"golgin A8 family, member B"	protein-coding
chr1.227982961.+	chr1	227982961	227982962	+	0	NA	Intergenic	Intergenic	-20457	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr19.50670033.-	chr19	50670033	50670034	-	0	NA	Intergenic	AluSg|SINE|Alu	3495	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr1.217314042.+	chr1	217314042	217314043	+	0	NA	Intergenic	Intergenic	-2945	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr1.3022481.-	chr1	3022481	3022482	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	22058	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr12.38493595.-	chr12	38493595	38493596	-	0	NA	Intergenic	Intergenic	216962	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr2.100511134.+	chr2	100511134	100511135	+	0	NA	"intron (NM_002285, intron 6 of 23)"	AluY|SINE|Alu	210911	NM_001025108	3899	Hs.444414	NM_001025108	ENSG00000144218	AFF3	LAF4|MLLT2-like	"AF4/FMR2 family, member 3"	protein-coding
chr12.120959520.+	chr12	120959520	120959521	+	0	NA	"intron (NM_032314, intron 2 of 6)"	"intron (NM_032314, intron 2 of 6)"	7444	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr9.131293205.-	chr9	131293205	131293206	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	"intron (NM_001003722, intron 9 of 15)"	21632	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr2.240129741.-	chr2	240129741	240129742	-	0	NA	"intron (NM_006037, intron 3 of 26)"	AluY|SINE|Alu	12588	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	miscRNA
chr7.56888277.+	chr7	56888277	56888278	+	0	NA	Intergenic	Intergenic	61562	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr16.443686.+	chr16	443686	443687	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3506	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr1.4712962.-	chr1	4712962	4712963	-	0	NA	Intergenic	Intergenic	2143	NM_001042478	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr1.165740550.+	chr1	165740550	165740551	+	0	NA	Intergenic	AluY|SINE|Alu	-2391	NM_019026	54499	Hs.31498	NM_001256164	ENSG00000143183	TMCO1	HP10122|PCIA3|PNAS-136|RP11-466F5.7|TMCC4	transmembrane and coiled-coil domains 1	protein-coding
chr21.44478122.+	chr21	44478122	44478123	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17918	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr19.45530312.+	chr19	45530312	45530313	+	0	NA	"intron (NM_006509, intron 6 of 10)"	AluY|SINE|Alu	-11986	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr3.31573989.-	chr3	31573989	31573990	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	502	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr6.89378012.+	chr6	89378012	89378013	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295336	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr7.139162648.-	chr7	139162648	139162649	-	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	-5809	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr19.45530310.+	chr19	45530310	45530311	+	0	NA	"intron (NM_006509, intron 6 of 10)"	AluY|SINE|Alu	-11988	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr10.129196009.-	chr10	129196009	129196010	-	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	151604	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr10.133203429.-	chr10	133203429	133203430	-	0	NA	Intergenic	Intergenic	93445	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr6.167607746.-	chr6	167607746	167607747	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23665	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr3.132441739.+	chr3	132441739	132441740	+	0	NA	promoter-TSS (NM_153240)	promoter-TSS (NM_153240)	-436	NR_037804	100532724	Hs.511991	NR_037804		NPHP3-ACAD11	-	NPHP3-ACAD11 readthrough	miscRNA
chr16.4051413.+	chr16	4051413	4051414	+	0	NA	"intron (NM_001116, intron 3 of 10)"	L1MD3|LINE|L1	114773	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr2.10733453.-	chr2	10733453	10733454	-	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	-96660	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr9.105850383.-	chr9	105850383	105850384	-	0	NA	Intergenic	AluYc|SINE|Alu	-92790	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chrX.46794158.-	chrX	46794158	46794159	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22290	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr11.69189614.+	chr11	69189614	69189615	+	0	NA	Intergenic	Intergenic	127992	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr22.51001334.+	chr22	51001334	51001335	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-6	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr6.24720957.+	chr6	24720957	24720958	+	0	NA	Intergenic	CpG	-1554	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr9.137200943.-	chr9	137200943	137200944	-	0	NA	Intergenic	Intergenic	17373	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr13.111268057.+	chr13	111268057	111268058	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	126	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr7.55955203.+	chr7	55955203	55955204	+	0	NA	Intergenic	CpG	-24721	NM_207366	346288	Hs.453629	NM_207366	ENSG00000154997	Sep-14	-	septin 14	protein-coding
chr8.95668702.+	chr8	95668702	95668703	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15338	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr3.1900270.-	chr3	1900270	1900271	-	0	NA	Intergenic	AluSp|SINE|Alu	240280	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr19.2187823.-	chr19	2187823	2187824	-	0	NA	"intron (NM_032482, intron 3 of 27)"	AluY|SINE|Alu	-23675	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chrX.145183529.+	chrX	145183529	145183530	+	0	NA	Intergenic	AluJb|SINE|Alu	-74139	NR_030581	100126341		NR_030581	ENSG00000216056	MIR891A	MIRN891A	microRNA 891a	miscRNA
chr11.189870.-	chr11	189870	189871	-	0	NA	Intergenic	TAR1|Satellite|telo	3210	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	"secretoglobin, family 1C, member 1-like"	protein-coding
chrX.152916302.-	chrX	152916302	152916303	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8405	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr9.131638995.+	chr9	131638995	131638996	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluY|SINE|Alu	5359	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr11.66997304.+	chr11	66997304	66997305	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10202	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr14.103988586.+	chr14	103988586	103988587	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	610	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr22.46929378.+	chr22	46929378	46929379	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3689	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr7.97911056.+	chr7	97911056	97911057	+	0	NA	promoter-TSS (NM_001159491)	promoter-TSS (NM_001159491)	77	NM_001159491	25798	Hs.567438	NM_001159491	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
chr1.232468265.+	chr1	232468265	232468266	+	0	NA	Intergenic	SVA_D|Other|Other	182978	NM_020808	57568	Hs.268774	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal-induced proliferation-associated 1 like 2	protein-coding
chr18.43723391.+	chr18	43723391	43723392	+	0	NA	Intergenic	AluY|SINE|Alu	-30597	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr14.105158936.-	chr14	105158936	105158937	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2993	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr16.1845119.+	chr16	1845119	1845120	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-210	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr11.64120577.-	chr11	64120577	64120578	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6048	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr5.122861547.+	chr5	122861547	122861548	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13754	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr1.6185541.-	chr1	6185541	6185542	-	0	NA	"intron (NM_015557, intron 28 of 41)"	"intron (NM_015557, intron 28 of 41)"	-54653	NM_015557	26038	Hs.522898	NM_015557	ENSG00000116254	CHD5	CHD-5	chromodomain helicase DNA binding protein 5	protein-coding
chr19.56015591.+	chr19	56015591	56015592	+	0	NA	TTS (NM_001195267)	TTS (NM_001195267)	15721	NM_001195267	284297	Hs.554182	NM_182571	ENSG00000179954	SSC5D	-	scavenger receptor cysteine rich domain containing (5 domains)	protein-coding
chr15.24209794.+	chr15	24209794	24209795	+	0	NA	Intergenic	AluY|SINE|Alu	205259	NR_026647	791115	Hs.742600	NR_026647		PWRN2	NCRNA00199	Prader-Willi region non-protein coding RNA 2	miscRNA
chr8.27695343.-	chr8	27695343	27695344	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-6	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr16.3203695.+	chr16	3203695	3203696	+	0	NA	Intergenic	AluSg|SINE|Alu	18561	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr8.76968566.-	chr8	76968566	76968567	-	0	NA	Intergenic	AluY|SINE|Alu	-516363	NM_004133	3174	Hs.241529	NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	"hepatocyte nuclear factor 4, gamma"	protein-coding
chr10.59351293.+	chr10	59351293	59351294	+	0	NA	Intergenic	AluY|SINE|Alu	-286974	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr4.160861097.-	chr4	160861097	160861098	-	0	NA	Intergenic	SVA_F|Other|Other	-672099	NM_014247	9693	Hs.113912	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chr10.133869252.+	chr10	133869252	133869253	+	0	NA	Intergenic	Intergenic	-49061	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr1.31628170.-	chr1	31628170	31628171	-	0	NA	Intergenic	CpG	-84564	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr20.13654654.+	chr20	13654654	13654655	+	0	NA	Intergenic	AluY|SINE|Alu	-35071	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr11.28078827.+	chr11	28078827	28078828	+	0	NA	TTS (NR_030341)	TTS (NR_030341)	465	NR_030341	693195		NR_030341	ENSG00000207874	MIR610	MIRN610|hsa-mir-610	microRNA 610	miscRNA
chr1.161508323.-	chr1	161508323	161508324	-	0	NA	Intergenic	AluYf4|SINE|Alu	-11495	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr17.43028723.-	chr17	43028723	43028724	-	0	NA	Intergenic	AluSp|SINE|Alu	3644	NM_001264573	146909	Hs.135094	NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
chr19.47747448.+	chr19	47747448	47747449	+	0	NA	Intergenic	CpG	-11425	NM_001127242	27113	Hs.467020	NM_001127240	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
chr16.1845163.+	chr16	1845163	1845164	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-254	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr2.207270697.-	chr2	207270697	207270698	-	0	NA	Intergenic	AluY|SINE|Alu	37671	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr20.60832977.+	chr20	60832977	60832978	+	0	NA	"intron (NM_014835, intron 2 of 13)"	AluSx1|SINE|Alu	19397	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr1.183892736.-	chr1	183892736	183892737	-	0	NA	"intron (NM_015149, intron 18 of 18)"	MIRc|SINE|MIR	-114127	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr15.37172822.-	chr15	37172822	37172823	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5912	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr12.133328239.-	chr12	133328239	133328240	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10212	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr14.77965488.-	chr14	77965488	77965489	-	0	NA	promoter-TSS (NM_199296)	promoter-TSS (NM_199296)	278	NM_182509	145501	Hs.29742	NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2 homolog (zebrafish)	protein-coding
chr3.31573990.+	chr3	31573990	31573991	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-501	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr19.17581100.-	chr19	17581100	17581101	-	0	NA	promoter-TSS (NM_198580)	promoter-TSS (NM_198580)	200	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr16.70207306.+	chr16	70207306	70207307	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-622	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr4.185174265.-	chr4	185174265	185174266	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35151	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chrX.29584324.-	chrX	29584324	29584325	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649351	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr3.42696265.-	chr3	42696265	42696266	-	0	NA	"intron (NM_145166, intron 1 of 5)"	CpG	-1089	NM_145166	92999	Hs.409561	NM_145166		ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
chr15.68096916.-	chr15	68096916	68096917	-	0	NA	"intron (NM_001206804, intron 21 of 21)"	"intron (NM_001206804, intron 21 of 21)"	15126	NM_001258024	390598	Hs.451224	NM_001031807		SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
chr20.61736919.+	chr20	61736919	61736920	+	0	NA	Intergenic	Intergenic	-3248	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr4.159668008.-	chr4	159668008	159668009	-	0	NA	Intergenic	SVA_D|Other|Other	22174	NM_020840	57600	Hs.731810	NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
chr3.164852035.+	chr3	164852035	164852036	+	0	NA	Intergenic	AluY|SINE|Alu	-55752	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr3.67048762.-	chr3	67048762	67048763	-	0	NA	promoter-TSS (NM_032505)	promoter-TSS (NM_032505)	-35	NM_032505	84541	Hs.116665	NM_032505	ENSG00000163376	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
chr2.210472366.+	chr2	210472366	210472367	+	0	NA	"intron (NM_031845, intron 2 of 11)"	AluSx1|SINE|Alu	27963	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr18.11971491.+	chr18	11971491	11971492	+	0	NA	Intergenic	AluSx|SINE|Alu	-9936	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr7.5557972.+	chr7	5557972	5557973	+	0	NA	Intergenic	AluYc|SINE|Alu	-4573	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr11.17788566.+	chr11	17788566	17788567	+	0	NA	"intron (NM_004976, intron 1 of 1)"	AluSx|SINE|Alu	31071	NM_004976	3746	Hs.552896	NM_001112741	ENSG00000129159	KCNC1	KV3.1|KV4|NGK2	"potassium voltage-gated channel, Shaw-related subfamily, member 1"	protein-coding
chr10.42392087.+	chr10	42392087	42392088	+	0	NA	Intergenic	HSATII|Satellite|Satellite	471406	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr20.25255869.+	chr20	25255869	25255870	+	0	NA	"intron (NM_002862, intron 5 of 19)"	"intron (NM_002862, intron 5 of 19)"	27163	NM_002862	5834	Hs.368157	NM_002862	ENSG00000100994	PYGB	GPBB	"phosphorylase, glycogen; brain"	protein-coding
chr3.60485366.+	chr3	60485366	60485367	+	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	751767	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr7.139162644.-	chr7	139162644	139162645	-	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	-5813	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr2.178267575.-	chr2	178267575	178267576	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10104	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr2.86775902.-	chr2	86775902	86775903	-	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	-14718	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr19.5658834.-	chr19	5658834	5658835	-	0	NA	"intron (NR_037699, intron 12 of 18)"	AluY|SINE|Alu	21942	NM_198533	374875	Hs.739286	NM_001267868	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid (11-beta) dehydrogenase 1-like	protein-coding
chr2.52338206.-	chr2	52338206	52338207	-	0	NA	Intergenic	AluY|SINE|Alu	1078532	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr17.18179057.-	chr17	18179057	18179058	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14633	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr6.114067442.-	chr6	114067442	114067443	-	0	NA	Intergenic	AluY|SINE|Alu	111085	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr15.31566387.+	chr15	31566387	31566388	+	0	NA	Intergenic	AluY|SINE|Alu	-43337	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chr1.40260018.-	chr1	40260018	40260019	-	0	NA	Intergenic	AluY|SINE|Alu	5485	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr10.14851258.+	chr10	14851258	14851259	+	0	NA	Intergenic	AluY|SINE|Alu	28725	NM_001029954	441549	Hs.559067	NM_001029954		CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
chr13.111268327.+	chr13	111268327	111268328	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	396	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr17.27717834.+	chr17	27717834	27717835	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-109	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr9.16855825.+	chr9	16855825	16855826	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	14961	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr1.21829533.+	chr1	21829533	21829534	+	0	NA	Intergenic	SVA_C|Other|Other	-6325	NM_001127501	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr19.58310328.-	chr19	58310328	58310329	-	0	NA	Intergenic	AluY|SINE|Alu	-15953	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr18.10581556.+	chr18	10581556	10581557	+	0	NA	Intergenic	AluSq2|SINE|Alu	55683	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr1.28965051.-	chr1	28965051	28965052	-	0	NA	"intron (NM_005644, intron 1 of 5)"	AluSx|SINE|Alu	-4553	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chrX.70362715.+	chrX	70362715	70362716	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-1966	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr12.114827376.+	chr12	114827376	114827377	+	0	NA	"intron (NM_080717, intron 5 of 7)"	AluYa5|SINE|Alu	16592	NM_181486	6910	Hs.381715	NM_000192	ENSG00000089225	TBX5	HOS	T-box 5	protein-coding
chr3.36494727.-	chr3	36494727	36494728	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72630	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr2.32250703.+	chr2	32250703	32250704	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14141	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr17.80687656.+	chr17	80687656	80687657	+	0	NA	Intergenic	CpG	-5796	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr5.178287387.-	chr5	178287387	178287388	-	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	-433	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr10.12344453.+	chr10	12344453	12344454	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47130	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr14.33408056.+	chr14	33408056	33408057	+	0	NA	promoter-TSS (NM_001165893)	promoter-TSS (NM_001165893)	-403	NM_001164749	64067	Hs.675475	NM_001164749	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
chr19.3766778.-	chr19	3766778	3766779	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4113	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr8.1321515.-	chr8	1321515	1321516	-	0	NA	Intergenic	CpG	70688	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr14.105158933.-	chr14	105158933	105158934	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2990	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr17.18178997.+	chr17	18178997	18178998	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14573	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr6.160985704.+	chr6	160985704	160985705	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53548	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr21.46910409.+	chr21	46910409	46910410	+	0	NA	"intron (NM_030582, intron 19 of 41)"	"intron (NM_030582, intron 19 of 41)"	34985	NM_030582	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr12.46411959.-	chr12	46411959	46411960	-	0	NA	Intergenic	LTR12C|LTR|ERV1	27558	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr10.4887123.-	chr10	4887123	4887124	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18754	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr5.57859590.-	chr5	57859590	57859591	-	0	NA	Intergenic	SVA_A|Other|Other	19349	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr19.34394378.-	chr19	34394378	34394379	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106627	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr15.90327987.+	chr15	90327987	90327988	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8398	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr15.83365805.+	chr15	83365805	83365806	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12830	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr20.62657591.+	chr20	62657591	62657592	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8106	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr7.53103639.-	chr7	53103639	53103640	-	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	-290	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr21.47343979.-	chr21	47343979	47343980	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57684	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr4.163164029.+	chr4	163164029	163164030	+	0	NA	Intergenic	AluY|SINE|Alu	-78843	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr9.99801111.+	chr9	99801111	99801112	+	0	NA	"intron (NM_001201575, intron 1 of 7)"	CpG	481	NM_001333	1515	Hs.610096	NM_001201575		CTSL2	CATL2|CTSU|CTSV	cathepsin L2	protein-coding
chr17.1389878.+	chr17	1389878	1389879	+	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	-827	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chrM.2573.+	chrM	2573	2574	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.149975025.+	chr1	149975025	149975026	+	0	NA	"intron (NM_020205, intron 1 of 11)"	AluY|SINE|Alu	7661	NM_020205	56957	Hs.98322	NM_020205	ENSG00000163113	OTUD7B	CEZANNE|ZA20D1	OTU domain containing 7B	protein-coding
chr8.27678906.-	chr8	27678906	27678907	-	0	NA	"intron (NM_018492, intron 5 of 7)"	AluSg|SINE|Alu	-16443	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr3.11528973.-	chr3	11528973	11528974	-	0	NA	"intron (NM_001136031, intron 17 of 17)"	SVA_F|Other|Other	-81425	NM_001128221	9686	Hs.740389	NM_001128219	ENSG00000144560	VGLL4	VGL-4	vestigial like 4 (Drosophila)	protein-coding
chr12.131551517.+	chr12	131551517	131551518	+	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	-98039	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr12.26123290.-	chr12	26123290	26123291	-	0	NA	"intron (NM_001164748, intron 1 of 4)"	"intron (NM_001164748, intron 1 of 4)"	3398	NM_001164747	11228	Hs.696433	NM_001164746	ENSG00000123094	RASSF8	C12orf2|HOJ1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding
chr12.64883610.+	chr12	64883610	64883611	+	0	NA	"intron (NM_013254, intron 12 of 20)"	AluSc8|SINE|Alu	37770	NM_013254	29110	Hs.505874	NM_013254	ENSG00000183735	TBK1	NAK|T2K	TANK-binding kinase 1	protein-coding
chr1.150745389.+	chr1	150745389	150745390	+	0	NA	Intergenic	AluY|SINE|Alu	-6956	NM_001199739	1520	Hs.181301	NM_001199739	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
chr19.16972571.+	chr19	16972571	16972572	+	0	NA	"intron (NM_015260, intron 8 of 19)"	AluSq2|SINE|Alu	-27255	NM_003950	9002	Hs.137574	NM_003950		F2RL3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding
chr13.50138584.-	chr13	50138584	50138585	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21135	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr2.32738833.+	chr2	32738833	32738834	+	0	NA	"intron (NM_016252, intron 54 of 73)"	AluSg|SINE|Alu	-18387	NR_030285	693143		NR_030285		MIR558	MIRN558|hsa-mir-558	microRNA 558	miscRNA
chr6.146183443.-	chr6	146183443	146183444	-	0	NA	"intron (NR_038246, intron 2 of 2)"	AluYc|SINE|Alu	-47431	NR_038244	100507557	Hs.124537	NR_038244		LOC100507557	-	uncharacterized LOC100507557	miscRNA
chrX.11749465.-	chrX	11749465	11749466	-	0	NA	Intergenic	AluSx|SINE|Alu	26813	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr16.11746943.-	chr16	11746943	11746944	-	0	NA	Intergenic	AluSx1|SINE|Alu	15346	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr5.55029202.+	chr5	55029202	55029203	+	0	NA	Intergenic	AluY|SINE|Alu	-4643	NM_001166533	54514	Hs.223581	NM_019039	ENSG00000152670	DDX4	VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding
chr7.2716299.-	chr7	2716299	2716300	-	0	NA	Intergenic	Intergenic	2864	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr19.35418177.-	chr19	35418177	35418178	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-370	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr9.16766054.-	chr9	16766054	16766055	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104732	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr2.178267570.-	chr2	178267570	178267571	-	0	NA	"intron (NM_003659, intron 1 of 19)"	AluSx|SINE|Alu	-10099	NM_003659	8540	Hs.516543	NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
chr3.183543580.+	chr3	183543580	183543581	+	0	NA	promoter-TSS (NM_024871)	promoter-TSS (NM_024871)	-187	NM_024871	79929	Hs.478465	NM_024871	ENSG00000180834	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
chr22.42834059.+	chr22	42834059	42834060	+	0	NA	Intergenic	Intergenic	-5658	NM_145912	150372	Hs.436677	NM_145912	ENSG00000235568	NFAM1	CNAIP|bK126B4.4	NFAT activating protein with ITAM motif 1	protein-coding
chr7.2943535.-	chr7	2943535	2943536	-	0	NA	Intergenic	Intergenic	59576	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr5.1067278.-	chr5	1067278	1067279	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4189	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr1.244999229.-	chr1	244999229	244999230	-	0	NA	"intron (NM_198076, intron 1 of 3)"	"intron (NM_198076, intron 1 of 3)"	-590	NM_198076	116228	Hs.411490	NM_198076	ENSG00000203667	COX20	FAM36A	COX20 Cox2 chaperone homolog (S. cerevisiae)	protein-coding
chr1.59041975.-	chr1	59041975	59041976	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1191	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr4.186162073.-	chr4	186162073	186162074	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30789	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr12.112620061.-	chr12	112620061	112620062	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56712	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr21.46737137.-	chr21	46737137	46737138	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29170	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr18.14856559.+	chr18	14856559	14856560	+	0	NA	Intergenic	SVA_F|Other|Other	26394	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	miscRNA
chr3.46037192.-	chr3	46037192	46037193	-	0	NA	"intron (NM_024513, intron 1 of 17)"	CpG	-124	NM_024513	79443	Hs.744184	NM_024513	ENSG00000163820	FYCO1	CATC2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding
chr3.15147886.-	chr3	15147886	15147887	-	0	NA	Intergenic	AluSz|SINE|Alu	7231	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr14.21741097.+	chr14	21741097	21741098	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3459	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr16.87360663.-	chr16	87360663	87360664	-	0	NA	Intergenic	Intergenic	9637	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr2.242674198.+	chr2	242674198	242674199	+	0	NA	"intron (NM_152783, intron 1 of 9)"	CpG	168	NM_152783	728294	Hs.516813	NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
chr8.41166033.+	chr8	41166033	41166034	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	957	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr19.3786033.-	chr19	3786033	3786034	-	0	NA	"intron (NM_139355, intron 1 of 13)"	CpG	-382	NM_139355	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chr1.93241428.-	chr1	93241428	93241429	-	0	NA	"intron (NM_005665, intron 1 of 17)"	AluY|SINE|Alu	-16533	NM_005665	7813	Hs.594434	NM_005665	ENSG00000067208	EVI5	NB4S	ecotropic viral integration site 5	protein-coding
chr4.166248538.-	chr4	166248538	166248539	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	280	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr3.17496074.+	chr3	17496074	17496075	+	0	NA	"intron (NM_014744, intron 3 of 21)"	AluY|SINE|Alu	245438	NM_001134381	9779	Hs.475629	NM_001134380	ENSG00000131374	TBC1D5	-	"TBC1 domain family, member 5"	protein-coding
chr4.163164004.+	chr4	163164004	163164005	+	0	NA	Intergenic	AluY|SINE|Alu	-78818	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr17.810067.-	chr17	810067	810068	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42716	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr1.80177672.+	chr1	80177672	80177673	+	0	NA	Intergenic	AluSx|SINE|Alu	-705177	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr7.1286217.-	chr7	1286217	1286218	-	0	NA	Intergenic	CpG	-13563	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr16.27160506.-	chr16	27160506	27160507	-	0	NA	Intergenic	AluY|SINE|Alu	54301	NM_024773	79831	Hs.145717	NM_001145348	ENSG00000155666	KDM8	JMJD5	lysine (K)-specific demethylase 8	protein-coding
chr22.18532588.-	chr22	18532588	18532589	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20437	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr2.236936230.+	chr2	236936230	236936231	+	0	NA	"intron (NM_001037131, intron 13 of 17)"	"intron (NM_001037131, intron 13 of 17)"	140422	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr19.45524639.-	chr19	45524639	45524640	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17659	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr16.9186534.+	chr16	9186534	9186535	+	0	NA	"intron (NM_014117, intron 1 of 3)"	CpG-8843	997	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr20.55247409.+	chr20	55247409	55247410	+	0	NA	Intergenic	AluSz6|SINE|Alu	43051	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr1.28099701.+	chr1	28099701	28099702	+	0	NA	promoter-TSS (NM_177424)	promoter-TSS (NM_177424)	7	NM_177424	23673	Hs.523855	NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
chr5.53128622.-	chr5	53128622	53128623	-	0	NA	Intergenic	AluSq|SINE|Alu	-118807	NR_030307	693166		NR_030307		MIR581	MIRN581|hsa-mir-581	microRNA 581	miscRNA
chr5.18111606.+	chr5	18111606	18111607	+	0	NA	Intergenic	AluY|SINE|Alu	-724187	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr5.693665.+	chr5	693665	693666	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-155	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr12.53535539.+	chr12	53535539	53535540	+	0	NA	Intergenic	AluY|SINE|Alu	22738	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr3.99923770.-	chr3	99923770	99923771	-	0	NA	Intergenic	AluSq|SINE|Alu	-19102	NR_028358	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30C	CDC50C	transmembrane protein 30C	pseudo
chr5.42921821.+	chr5	42921821	42921822	+	0	NA	Intergenic	AluY|SINE|Alu	97092	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	miscRNA
chr16.12354792.+	chr16	12354792	12354793	+	0	NA	"intron (NM_032167, intron 14 of 20)"	"intron (NM_032167, intron 14 of 20)"	284190	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr10.14719527.-	chr10	14719527	14719528	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97369	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr1.3560982.+	chr1	3560982	3560983	+	0	NA	"intron (NM_017818, intron 3 of 11)"	CpG	5689	NM_017818	49856	Hs.31714	NM_017818	ENSG00000116213	WRAP73	WDR8	"WD repeat containing, antisense to TP73"	protein-coding
chr19.46966403.+	chr19	46966403	46966404	+	0	NA	Intergenic	AluSz|SINE|Alu	8417	NM_018215	55228	Hs.8395	NM_001103149	ENSG00000182013	PNMAL1	-	paraneoplastic Ma antigen family-like 1	protein-coding
chr3.48533701.+	chr3	48533701	48533702	+	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	7782	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr12.26964588.-	chr12	26964588	26964589	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21543	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr7.1474534.+	chr7	1474534	1474535	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24575	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr16.3109385.+	chr16	3109385	3109386	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5928	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr17.26336756.+	chr17	26336756	26336757	+	0	NA	Intergenic	AluSz|SINE|Alu	-32932	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr16.1815038.+	chr16	1815038	1815039	+	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	6672	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr7.129113704.+	chr7	129113704	129113705	+	0	NA	"intron (NM_020704, intron 18 of 20)"	AluSc8|SINE|Alu	-28616	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine-rich protein 1	protein-coding
chr3.170002885.-	chr3	170002885	170002886	-	0	NA	"intron (NM_002740, intron 12 of 17)"	AluY|SINE|Alu	-62665	NM_002740	5584	Hs.478199	NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	"protein kinase C, iota"	protein-coding
chr22.46303248.+	chr22	46303248	46303249	+	0	NA	Intergenic	Intergenic	69760	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr18.11959812.+	chr18	11959812	11959813	+	0	NA	Intergenic	SVA_D|Other|Other	-21615	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr10.46833265.-	chr10	46833265	46833266	-	0	NA	Intergenic	AluY|SINE|Alu	64376	NR_027632	414241	Hs.594331	NR_027632	ENSG00000165874	FAM35BP	FAM35B|bA38L15.1	"family with sequence similarity 35, member A pseudogene"	pseudo
chr1.43460353.+	chr1	43460353	43460354	+	0	NA	Intergenic	AluSp|SINE|Alu	-35506	NM_006516	6513	Hs.473721	NM_006516		SLC2A1	DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED	"solute carrier family 2 (facilitated glucose transporter), member 1"	protein-coding
chr13.51885843.-	chr13	51885843	51885844	-	0	NA	Intergenic	AluSx|SINE|Alu	29325	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr2.240371685.-	chr2	240371685	240371686	-	0	NA	Intergenic	SVA_D|Other|Other	49042	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chrX.90204101.+	chrX	90204101	90204102	+	0	NA	Intergenic	AluY|SINE|Alu	-485496	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr4.106031864.+	chr4	106031864	106031865	+	0	NA	Intergenic	SVA_E|Other|Other	-35168	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chr6.58779144.+	chr6	58779144	58779145	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-491420	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr11.28078811.+	chr11	28078811	28078812	+	0	NA	TTS (NR_030341)	TTS (NR_030341)	449	NR_030341	693195		NR_030341	ENSG00000207874	MIR610	MIRN610|hsa-mir-610	microRNA 610	miscRNA
chr1.184006352.-	chr1	184006352	184006353	-	0	NA	"exon (NM_015101, exon 1 of 12)"	"exon (NM_015101, exon 1 of 12)"	-511	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr14.90254578.-	chr14	90254578	90254579	-	0	NA	Intergenic	AluSx|SINE|Alu	-166511	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr17.77198172.-	chr17	77198172	77198173	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-127153	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr20.44897208.+	chr20	44897208	44897209	+	0	NA	"intron (NM_021248, intron 1 of 11)"	"intron (NM_021248, intron 1 of 11)"	39929	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	"cadherin 22, type 2"	protein-coding
chr8.60407760.-	chr8	60407760	60407761	-	0	NA	Intergenic	L1PA7|LINE|L1	375993	NM_014729	9760	Hs.634856	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection-associated high mobility group box	protein-coding
chr19.11172251.+	chr19	11172251	11172252	+	0	NA	"intron (NM_001128845, intron 32 of 32)"	AluY|SINE|Alu	-27787	NM_001195799	3949	Hs.713981	NM_000527	ENSG00000130164	LDLR	FH|FHC|LDLCQ2	low density lipoprotein receptor	protein-coding
chr7.51276061.+	chr7	51276061	51276062	+	0	NA	"intron (NM_015198, intron 2 of 12)"	SVA_D|Other|Other	108454	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
chr17.4708684.+	chr17	4708684	4708685	+	0	NA	Intergenic	AluSp|SINE|Alu	-1712	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr1.151573456.-	chr1	151573456	151573457	-	0	NA	Intergenic	SVA_E|Other|Other	11206	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr21.47418981.+	chr21	47418981	47418982	+	0	NA	"intron (NM_001848, intron 25 of 34)"	"intron (NM_001848, intron 25 of 34)"	17318	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr14.73941562.+	chr14	73941562	73941563	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16082	NM_024644	79697	Hs.509916	NM_024644		C14orf169	MAPJD|NO66|ROX	chromosome 14 open reading frame 169	protein-coding
chr11.92637310.-	chr11	92637310	92637311	-	0	NA	Intergenic	AluY|SINE|Alu	65479	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr7.5355969.+	chr7	5355969	5355970	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33408	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr4.39561498.-	chr4	39561498	39561499	-	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	-32039	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr7.158268144.+	chr7	158268144	158268145	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57361	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chrX.153362951.+	chrX	153362951	153362952	+	0	NA	"intron (NM_004992, intron 1 of 3)"	CpG	237	NM_001110792	4204	Hs.731393	NM_001110792	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl CpG binding protein 2 (Rett syndrome)	protein-coding
chr20.62108079.-	chr20	62108079	62108080	-	0	NA	Intergenic	AluSq2|SINE|Alu	4086	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr6.169648404.-	chr6	169648404	169648405	-	0	NA	"intron (NM_003247, intron 4 of 22)"	"intron (NM_003247, intron 4 of 22)"	-5733	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr17.72262263.+	chr17	72262263	72262264	+	0	NA	Intergenic	AluJb|SINE|Alu	-8123	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr16.67519961.-	chr16	67519961	67519962	-	0	NA	Intergenic	AluY|SINE|Alu	2245	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr18.74312324.-	chr18	74312324	74312325	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-71712	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LOC284276	-	uncharacterized LOC284276	miscRNA
chr6.114663761.-	chr6	114663761	114663762	-	0	NA	Intergenic	CpG	279720	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chr2.240371807.+	chr2	240371807	240371808	+	0	NA	Intergenic	SVA_D|Other|Other	-49164	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chrX.152916389.-	chrX	152916389	152916390	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8492	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr1.92206175.+	chr1	92206175	92206176	+	0	NA	"intron (NR_036634, intron 5 of 17)"	AluSx1|SINE|Alu	145661	NM_003243	7049	Hs.735919	NM_001195683	ENSG00000069702	TGFBR3	BGCAN|betaglycan	"transforming growth factor, beta receptor III"	protein-coding
chr12.120959419.+	chr12	120959419	120959420	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7545	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr2.213802366.-	chr2	213802366	213802367	-	0	NA	Intergenic	AluY|SINE|Alu	11306	NR_039936	100616472		NR_039936		MIR4776-2	-	microRNA 4776-2	miscRNA
chr1.200904652.+	chr1	200904652	200904653	+	0	NA	Intergenic	AluSx|SINE|Alu	40703	NM_001142569	55765	Hs.518997	NM_001142569	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
chr5.57859393.-	chr5	57859393	57859394	-	0	NA	Intergenic	SVA_A|Other|Other	19546	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr19.49701787.+	chr19	49701787	49701788	+	0	NA	"intron (NM_017636, intron 17 of 24)"	AluSq|SINE|Alu	40771	NM_017636	54795	Hs.467101	NM_001195227	ENSG00000130529	TRPM4	PFHB1B|TRPM4B	"transient receptor potential cation channel, subfamily M, member 4"	protein-coding
chr19.589015.-	chr19	589015	589016	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	878	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr14.93564773.-	chr14	93564773	93564774	-	0	NA	"intron (NM_014216, intron 2 of 10)"	AluY|SINE|Alu	-17490	NM_001142593	3705	Hs.308122	NM_001142593	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
chr7.128142001.+	chr7	128142001	128142002	+	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	25218	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr22.46504413.+	chr22	46504413	46504414	+	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	-4216	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr8.3825567.-	chr8	3825567	3825568	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026761	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chrX.70579468.-	chrX	70579468	70579469	-	0	NA	"intron (NR_001568, intron 2 of 3)"	AluSz6|SINE|Alu	6646	NM_138923	6872	Hs.158560	NM_004606	ENSG00000147133	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|N-TAF1|NSCL2|OF|P250|TAF2A|TAFII250|XDP	"TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa"	protein-coding
chr8.58122874.-	chr8	58122874	58122875	-	0	NA	Intergenic	MER50|LTR|ERV1	8774	NR_038235	100507651	Hs.631151	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	miscRNA
chr11.1122339.-	chr11	1122339	1122340	-	0	NA	Intergenic	Intergenic	-47464	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr11.66884082.+	chr11	66884082	66884083	+	0	NA	Intergenic	AluSx|SINE|Alu	-2658	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr3.164852025.+	chr3	164852025	164852026	+	0	NA	Intergenic	AluY|SINE|Alu	-55742	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr20.58483226.-	chr20	58483226	58483227	-	0	NA	"intron (NM_014258, intron 13 of 43)"	AluY|SINE|Alu	-23983	NM_014258	10388	Hs.202676	NM_014258	ENSG00000196074	SYCP2	SCP2	synaptonemal complex protein 2	protein-coding
chr4.8379483.-	chr4	8379483	8379484	-	0	NA	"intron (NM_003501, intron 14 of 17)"	"intron (NM_003501, intron 14 of 17)"	-62969	NM_001101667	8310	Hs.479122	NM_001101667	ENSG00000087008	ACOX3	-	"acyl-CoA oxidase 3, pristanoyl"	protein-coding
chr18.1924552.+	chr18	1924552	1924553	+	0	NA	Intergenic	AluSp|SINE|Alu	-564922	NR_023926	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	miscRNA
chr9.90884989.-	chr9	90884989	90884990	-	0	NA	Intergenic	AluY|SINE|Alu	118308	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr19.55770570.+	chr19	55770570	55770571	+	0	NA	promoter-TSS (NM_014931)	promoter-TSS (NM_014931)	-532	NM_014931	22870	Hs.515610	NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	"protein phosphatase 6, regulatory subunit 1"	protein-coding
chr10.21843540.+	chr10	21843540	21843541	+	0	NA	"intron (NM_001195627, intron 4 of 4)"	AluSc|SINE|Alu	19966	NM_001195626	8028	Hs.30385	NM_001195626	ENSG00000078403	MLLT10	AF10	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10"	protein-coding
chr20.1317957.-	chr20	1317957	1317958	-	0	NA	"intron (NR_040047, intron 1 of 2)"	MIR|SINE|MIR	8078	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr2.126700650.-	chr2	126700650	126700651	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712861	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr7.811061.-	chr7	811061	811062	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43748	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chrX.46794144.-	chrX	46794144	46794145	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22276	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr11.1266541.+	chr11	1266541	1266542	+	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	22246	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr4.96097941.+	chr4	96097941	96097942	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85299	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr19.11463934.+	chr19	11463934	11463935	+	0	NA	"intron (NM_001080503, intron 7 of 10)"	AluSc8|SINE|Alu	-2128	NM_001170635	64748	Hs.6846	NM_001170635	ENSG00000105520	LPPR2	PRG4	lipid phosphate phosphatase-related protein type 2	protein-coding
chr2.233274539.+	chr2	233274539	233274540	+	0	NA	"exon (NM_031313, exon 11 of 11)"	"exon (NM_031313, exon 11 of 11)"	2987	NM_031313	251	Hs.333509	NM_031313	ENSG00000163286	ALPPL2	ALPG|ALPPL|GCAP	"alkaline phosphatase, placental-like 2"	protein-coding
chr14.24785825.+	chr14	24785825	24785826	+	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	3512	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr16.9185106.-	chr16	9185106	9185107	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	431	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr3.112807985.-	chr3	112807985	112807986	-	0	NA	Intergenic	AluYc|SINE|Alu	69430	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr3.128839878.+	chr3	128839878	128839879	+	0	NA	"intron (NM_001204890, intron 11 of 12)"	"intron (NM_001204890, intron 11 of 12)"	769	NM_198490	339122	Hs.546542	NM_001204883	ENSG00000172780	RAB43	RAB11B|RAB41	"RAB43, member RAS oncogene family"	protein-coding
chr1.3560993.-	chr1	3560993	3560994	-	0	NA	"intron (NM_017818, intron 3 of 11)"	CpG	-5678	NM_017818	49856	Hs.31714	NM_017818	ENSG00000116213	WRAP73	WDR8	"WD repeat containing, antisense to TP73"	protein-coding
chrM.805.-	chrM	805	806	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.57322543.+	chr6	57322543	57322544	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140121	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr15.68570240.-	chr15	68570240	68570241	-	0	NA	promoter-TSS (NM_015322)	promoter-TSS (NM_015322)	-99	NM_015322	10116	Hs.362733	NM_015322		FEM1B	F1A-ALPHA|FIAA	fem-1 homolog b (C. elegans)	protein-coding
chr12.121338282.-	chr12	121338282	121338283	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	-3873	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr12.66768113.+	chr12	66768113	66768114	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71778	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chrX.129244527.+	chrX	129244527	129244528	+	0	NA	promoter-TSS (NM_001421)	promoter-TSS (NM_001421)	-52	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chrX.144902939.-	chrX	144902939	144902940	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-73	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr1.218505157.-	chr1	218505157	218505158	-	0	NA	"3' UTR (NM_016052, exon 5 of 5)"	"3' UTR (NM_016052, exon 5 of 5)"	13519	NM_003238	7042	Hs.133379	NM_001135599	ENSG00000092969	TGFB2	LDS4|TGF-beta2	"transforming growth factor, beta 2"	protein-coding
chr1.97799192.-	chr1	97799192	97799193	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237713	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr19.3766703.-	chr19	3766703	3766704	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4038	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr3.174240488.-	chr3	174240488	174240489	-	0	NA	Intergenic	AluY|SINE|Alu	336623	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr20.57575065.+	chr20	57575065	57575066	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7244	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr15.69591546.-	chr15	69591546	69591547	-	0	NA	"intron (NM_017705, intron 1 of 8)"	CpG	-252	NM_017705	54852	Hs.591096	NM_001104554	ENSG00000137819	PAQR5	MPRG	progestin and adipoQ receptor family member V	protein-coding
chr5.78890156.-	chr5	78890156	78890157	-	0	NA	Intergenic	AluY|SINE|Alu	18087	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr11.2213911.-	chr11	2213911	2213912	-	0	NA	Intergenic	Intergenic	-19618	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr11.68448494.+	chr11	68448494	68448495	+	0	NA	Intergenic	Intergenic	-3489	NM_015973	51083	Hs.278959	NM_015973	ENSG00000069482	GAL	GAL-GMAP|GALN|GLNN|GMAP	galanin/GMAP prepropeptide	protein-coding
chr12.110715033.-	chr12	110715033	110715034	-	0	NA	Intergenic	AluSg|SINE|Alu	3999	NM_001681	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	"ATPase, Ca++ transporting, cardiac muscle, slow twitch 2"	protein-coding
chr11.66676678.+	chr11	66676678	66676679	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1338	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr2.113642018.-	chr2	113642018	113642019	-	0	NA	Intergenic	AluJb|SINE|Alu	28530	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr7.22396721.+	chr7	22396721	22396722	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-188	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr10.7626520.+	chr10	7626520	7626521	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35116	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr15.32298446.-	chr15	32298446	32298447	-	0	NA	Intergenic	AluY|SINE|Alu	24240	NM_000746	1139	Hs.713151	XM_003960575		CHRNA7	CHRNA7-2|NACHRA7	"cholinergic receptor, nicotinic, alpha 7 (neuronal)"	protein-coding
chr19.56749052.-	chr19	56749052	56749053	-	0	NA	Intergenic	AluJb|SINE|Alu	9393	NM_024303	79149	Hs.177688	NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
chr12.57177789.+	chr12	57177789	57177790	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20681	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr2.242500574.-	chr2	242500574	242500575	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	2016	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr19.36545864.+	chr19	36545864	36545865	+	0	NA	promoter-TSS (NM_001083961)	promoter-TSS (NM_001083961)	81	NM_001083961	284403	Hs.116244	NM_001083961	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
chr5.501540.+	chr5	501540	501541	+	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	23009	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr7.150812747.-	chr7	150812747	150812748	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28921	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr14.105242466.-	chr14	105242466	105242467	-	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	-17472	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr1.78230574.-	chr1	78230574	78230575	-	0	NA	Intergenic	AluSz|SINE|Alu	5010	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr6.160985694.+	chr6	160985694	160985695	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53538	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr7.1798894.-	chr7	1798894	1798895	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50096	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chrX.12171166.+	chrX	12171166	12171167	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14581	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chrX.58310267.+	chrX	58310267	58310268	+	0	NA	Intergenic	GSATX|Satellite|centr	-373200	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	"zinc finger, X-linked, duplicated A"	protein-coding
chr6.159515322.+	chr6	159515322	159515323	+	0	NA	Intergenic	Intergenic	-49138	NM_054114	117289	Hs.529984	NM_054114	ENSG00000164691	TAGAP	ARHGAP47|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
chr13.45945057.-	chr13	45945057	45945058	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29577	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr4.53576.-	chr4	53576	53577	-	0	NA	"intron (NM_182524, intron 1 of 5)"	CpG	-299	NM_001039127	255403	Hs.744444	NM_001039127		ZNF718	-	zinc finger protein 718	protein-coding
chr2.192110151.-	chr2	192110151	192110152	-	0	NA	promoter-TSS (NM_012223)	promoter-TSS (NM_012223)	-44	NM_012223	4430	Hs.439620	NM_001130158	ENSG00000128641	MYO1B	myr1	myosin IB	protein-coding
chr17.1165707.-	chr17	1165707	1165708	-	0	NA	Intergenic	AluSg|SINE|Alu	8151	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr5.133831557.+	chr5	133831557	133831558	+	0	NA	Intergenic	AluY|SINE|Alu	-30241	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr9.137200966.-	chr9	137200966	137200967	-	0	NA	Intergenic	Intergenic	17350	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr6.126111920.-	chr6	126111920	126111921	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-11	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr5.33420097.-	chr5	33420097	33420098	-	0	NA	Intergenic	AluY|SINE|Alu	20705	NM_001258437	6897	Hs.481860	NM_001258437	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
chr12.53796344.+	chr12	53796344	53796345	+	0	NA	"intron (NM_003109, intron 3 of 5)"	AluSx|SINE|Alu	-21295	NM_020547	269	Hs.659889	NM_001164690	ENSG00000135409	AMHR2	AMHR|MISR2|MISRII|MRII	"anti-Mullerian hormone receptor, type II"	protein-coding
chr14.90254576.+	chr14	90254576	90254577	+	0	NA	Intergenic	AluSx|SINE|Alu	166513	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr20.61885460.-	chr20	61885460	61885461	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-130	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr17.40601015.+	chr17	40601015	40601016	+	0	NA	Intergenic	SVA_D|Other|Other	-9847	NM_001130021	535	Hs.463074	NM_001130020	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	"ATPase, H+ transporting, lysosomal V0 subunit a1"	protein-coding
chr3.47744595.-	chr3	47744595	47744596	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78810	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr9.10974639.-	chr9	10974639	10974640	-	0	NA	Intergenic	L1PBa|LINE|L1	361916	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.27695141.-	chr8	27695141	27695142	-	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	-208	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr2.182902203.+	chr2	182902203	182902204	+	0	NA	"intron (NR_048566, intron 2 of 5)"	AluSc|SINE|Alu	51652	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	"protein phosphatase 1, regulatory (inhibitor) subunit 1C"	protein-coding
chr11.79151192.+	chr11	79151192	79151193	+	0	NA	"intron (NM_001098816, intron 1 of 33)"	CpG	503	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
chr4.166248579.-	chr4	166248579	166248580	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	239	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.28895950.+	chr1	28895950	28895951	+	0	NA	"intron (NM_017846, intron 6 of 8)"	AluY|SINE|Alu	9384	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	"small nucleolar RNA, C/D box 99"	snoRNA
chr17.74970318.+	chr17	74970318	74970319	+	0	NA	Intergenic	AluY|SINE|Alu	101589	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr11.18743333.-	chr11	18743333	18743334	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4444	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr9.108210402.-	chr9	108210402	108210403	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-77	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chrY.13478074.-	chrY	13478074	13478075	-	0	NA	Intergenic	CpG	-1055315	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr1.56617864.+	chr1	56617864	56617865	+	0	NA	Intergenic	AluY|SINE|Alu	427393	NM_003713	8613	Hs.619002	NM_003713	ENSG00000162407	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
chr6.46742358.+	chr6	46742358	46742359	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18736	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr1.17267883.+	chr1	17267883	17267884	+	0	NA	"intron (NM_014675, intron 13 of 36)"	AluSx|SINE|Alu	19438	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr19.2721070.+	chr19	2721070	2721071	+	0	NA	"intron (NM_145173, intron 1 of 1)"	CpG	320	NM_145173	148252	Hs.172753	NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	"DIRAS family, GTP-binding RAS-like 1"	protein-coding
chr20.32056486.+	chr20	32056486	32056487	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21442	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr1.54953533.-	chr1	54953533	54953534	-	0	NA	Intergenic	Intergenic	60274	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr5.79942109.+	chr5	79942109	79942110	+	0	NA	"intron (NM_000791, intron 3 of 5)"	AluSg|SINE|Alu	4745	NM_001190470	100462981	Hs.666077	NM_001190470		MTRNR2L2	HN2	MT-RNR2-like 2	protein-coding
chr9.95727723.+	chr9	95727723	95727724	+	0	NA	"intron (NM_001083536, intron 1 of 17)"	"intron (NM_001083536, intron 1 of 17)"	-8995	NM_033086	89846	Hs.411081	NM_001083536	ENSG00000127084	FGD3	ZFYVE5	"FYVE, RhoGEF and PH domain containing 3"	protein-coding
chr18.55445659.+	chr18	55445659	55445660	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24668	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr13.100353721.-	chr13	100353721	100353722	-	0	NA	"intron (NM_206808, intron 1 of 8)"	AluY|SINE|Alu	-58408	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr22.50644781.-	chr22	50644781	50644782	-	0	NA	"exon (NM_031454, exon 2 of 9)"	"exon (NM_031454, exon 2 of 9)"	-5373	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr1.54953502.+	chr1	54953502	54953503	+	0	NA	Intergenic	Intergenic	-60305	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr2.210525377.-	chr2	210525377	210525378	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80974	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr16.75369596.+	chr16	75369596	75369597	+	0	NA	"intron (NM_006324, intron 5 of 6)"	AluY|SINE|Alu	-67645	NM_001170715	9564	Hs.479747	NM_001170714	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
chr19.23432250.-	chr19	23432250	23432251	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-922	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr1.40330239.+	chr1	40330239	40330240	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18938	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr5.37332550.-	chr5	37332550	37332551	-	0	NA	"intron (NM_004298, intron 13 of 34)"	AluY|SINE|Alu	-38337	NM_004298	9631	Hs.547696	NM_004298	ENSG00000113569	NUP155	N155	nucleoporin 155kDa	protein-coding
chr20.35737799.-	chr20	35737799	35737800	-	0	NA	"intron (NM_152503, intron 21 of 23)"	AluSq10|SINE|Alu	13389	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding
chr8.120878156.+	chr8	120878156	120878157	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7744	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr20.3219199.-	chr20	3219199	3219200	-	0	NA	promoter-TSS (NM_001174090)	promoter-TSS (NM_001174090)	364	NM_001174090	83959	Hs.105607	NM_001174089	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	"solute carrier family 4, sodium borate transporter, member 11"	protein-coding
chr14.39018142.-	chr14	39018142	39018143	-	0	NA	Intergenic	AluYa5|SINE|Alu	292567	NM_175060	161198	Hs.525307	NM_175060	ENSG00000176435	CLEC14A	C14orf27|CEG1|EGFR-5	"C-type lectin domain family 14, member A"	protein-coding
chr19.58125578.+	chr19	58125578	58125579	+	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	-252	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr5.74743618.-	chr5	74743618	74743619	-	0	NA	"intron (NM_031361, intron 3 of 16)"	AluJo|SINE|Alu	-63836	NM_005713	10087	Hs.270437	NM_001130105	ENSG00000113163	COL4A3BP	CERT|CERTL|GPBP|STARD11	"collagen, type IV, alpha 3 (Goodpasture antigen) binding protein"	protein-coding
chr1.153574068.-	chr1	153574068	153574069	-	0	NA	Intergenic	AluY|SINE|Alu	-11446	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr5.1815626.+	chr5	1815626	1815627	+	0	NA	"intron (NM_004553, intron 3 of 3)"	"intron (NM_004553, intron 3 of 3)"	14130	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr16.634282.+	chr16	634282	634283	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-5075	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr17.47754940.-	chr17	47754940	47754941	-	0	NA	"intron (NM_001007226, intron 1 of 11)"	CpG	-585	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr17.40536628.-	chr17	40536628	40536629	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3777	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr10.24476812.+	chr10	24476812	24476813	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20908	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr2.237068229.-	chr2	237068229	237068230	-	0	NA	Intergenic	CpG	-8423	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.166810364.+	chr2	166810364	166810365	+	0	NA	promoter-TSS (NM_024753)	promoter-TSS (NM_024753)	-16	NM_024753	79809	Hs.310672	NM_024753	ENSG00000123607	TTC21B	ATD4|IFT139|JBTS11|NPHP12|THM1	tetratricopeptide repeat domain 21B	protein-coding
chr13.96649706.-	chr13	96649706	96649707	-	0	NA	"intron (NM_020121, intron 6 of 38)"	AluSg7|SINE|Alu	-56030	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr7.100719731.-	chr7	100719731	100719732	-	0	NA	Intergenic	AluJo|SINE|Alu	9055	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr7.5257615.-	chr7	5257615	5257616	-	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	-3715	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr22.28197547.-	chr22	28197547	28197548	-	0	NA	promoter-TSS (NM_002430)	promoter-TSS (NM_002430)	61	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
chr15.31566487.-	chr15	31566487	31566488	-	0	NA	Intergenic	AluY|SINE|Alu	43437	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chr3.102973884.+	chr3	102973884	102973885	+	0	NA	Intergenic	SVA_D|Other|Other	820025	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr2.132978687.+	chr2	132978687	132978688	+	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	35966	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr12.132116769.-	chr12	132116769	132116770	-	0	NA	Intergenic	L1ME1|LINE|L1	78863	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr5.171395362.+	chr5	171395362	171395363	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38515	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr2.158052722.+	chr2	158052722	158052723	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61618	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr21.45243662.+	chr21	45243662	45243663	+	0	NA	Intergenic	Intergenic	-11214	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr7.150812769.-	chr7	150812769	150812770	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28943	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr9.139071868.-	chr9	139071868	139071869	-	0	NA	Intergenic	Intergenic	-23136	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr6.39156017.-	chr6	39156017	39156018	-	0	NA	TTS (NM_003740)	TTS (NM_003740)	-41234	NM_003740	8645	Hs.444448	NM_003740	ENSG00000164626	KCNK5	K2p5.1|TASK-2|TASK2	"potassium channel, subfamily K, member 5"	protein-coding
chr2.11101336.+	chr2	11101336	11101337	+	0	NA	Intergenic	CpG	49273	NM_002236	3754	Hs.23735	NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	"potassium voltage-gated channel, subfamily F, member 1"	protein-coding
chr18.11959897.-	chr18	11959897	11959898	-	0	NA	Intergenic	SVA_D|Other|Other	21530	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr20.62108073.-	chr20	62108073	62108074	-	0	NA	Intergenic	AluSq2|SINE|Alu	4080	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr20.45936023.+	chr20	45936023	45936024	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11223	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr3.183034719.+	chr3	183034719	183034720	+	0	NA	"intron (NM_015078, intron 7 of 29)"	AluSx1|SINE|Alu	63687	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr9.133429999.+	chr9	133429999	133430000	+	0	NA	Intergenic	Intergenic	24882	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr11.1476592.+	chr11	1476592	1476593	+	0	NA	"intron (NM_003957, intron 16 of 19)"	"intron (NM_003957, intron 16 of 19)"	31356	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr1.214610011.+	chr1	214610011	214610012	+	0	NA	"intron (NM_005401, intron 3 of 18)"	AluSx1|SINE|Alu	115013	NM_005401	5784	Hs.193557	NM_005401		PTPN14	PEZ|PTP36	"protein tyrosine phosphatase, non-receptor type 14"	protein-coding
chr5.3188282.+	chr5	3188282	3188283	+	0	NA	Intergenic	CpG	347926	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr16.84670322.-	chr16	84670322	84670323	-	0	NA	Intergenic	AluY|SINE|Alu	11809	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr22.30781373.+	chr22	30781373	30781374	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1929	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr6.24720970.-	chr6	24720970	24720971	-	0	NA	Intergenic	CpG	1567	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr7.77452514.-	chr7	77452514	77452515	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluY|SINE|Alu	16933	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr16.53232365.-	chr16	53232365	53232366	-	0	NA	"intron (NM_025134, intron 2 of 38)"	AluSc8|SINE|Alu	-143420	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr17.48422543.-	chr17	48422543	48422544	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	850	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr7.155151647.-	chr7	155151647	155151648	-	0	NA	Intergenic	Intergenic	-62161	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr9.141038905.-	chr9	141038905	141038906	-	0	NA	Intergenic	Intergenic	5660	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr10.6985566.-	chr10	6985566	6985567	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164006	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr6.43672389.+	chr6	43672389	43672390	+	0	NA	Intergenic	AluSg|SINE|Alu	-16840	NM_018135	55168	Hs.520149	NM_001193343	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRPS18-3|S18bmt	mitochondrial ribosomal protein S18A	protein-coding
chr7.123388789.-	chr7	123388789	123388790	-	0	NA	"5' UTR (NM_003941, exon 1 of 11)"	"5' UTR (NM_003941, exon 1 of 11)"	-327	NM_003941	8976	Hs.731519	NM_003941	ENSG00000106299	WASL	N-WASP|NWASP	Wiskott-Aldrich syndrome-like	protein-coding
chr19.10041365.-	chr19	10041365	10041366	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5705	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr1.161393144.-	chr1	161393144	161393145	-	0	NA	Intergenic	SVA_D|Other|Other	55471	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chr5.86907804.+	chr5	86907804	86907805	+	0	NA	Intergenic	AluY|SINE|Alu	-198954	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr2.105472116.-	chr2	105472116	105472117	-	0	NA	"exon (NM_006236, exon 1 of 1)"	"exon (NM_006236, exon 1 of 1)"	-147	NM_006236	5455	Hs.673855	NM_006236		POU3F3	BRN1|OTF8	POU class 3 homeobox 3	protein-coding
chr5.55379909.-	chr5	55379909	55379910	-	0	NA	Intergenic	AluY|SINE|Alu	89088	NM_001190981	3572	Hs.706627	NM_001190981	ENSG00000134352	IL6ST	CD130|CDW130|GP130|IL-6RB	"interleukin 6 signal transducer (gp130, oncostatin M receptor)"	protein-coding
chr16.29305100.-	chr16	29305100	29305101	-	0	NA	Intergenic	L1M4|LINE|L1	8508	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr5.24116822.-	chr5	24116822	24116823	-	0	NA	Intergenic	AluY|SINE|Alu	-528263	NM_006727	1008	Hs.92489	NM_006727	ENSG00000040731	CDH10	-	"cadherin 10, type 2 (T2-cadherin)"	protein-coding
chr1.42522877.-	chr1	42522877	42522878	-	0	NA	Intergenic	AluY|SINE|Alu	21281	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr1.9517589.+	chr1	9517589	9517590	+	0	NA	Intergenic	AluJb|SINE|Alu	-81939	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr11.27721878.-	chr11	27721878	27721879	-	0	NA	promoter-TSS (NM_170734)	promoter-TSS (NM_170734)	-157	NM_001709	627	Hs.502182	NM_001143805	ENSG00000176697	BDNF	ANON2|BULN2	brain-derived neurotrophic factor	protein-coding
chr9.138437855.+	chr9	138437855	138437856	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-130	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr6.162441905.-	chr6	162441905	162441906	-	0	NA	"intron (NM_013988, intron 2 of 8)"	AluSg|SINE|Alu	706259	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr19.38836189.-	chr19	38836189	38836190	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9746	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr2.55647058.-	chr2	55647058	55647059	-	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	1	NM_001254943	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chrX.153718920.+	chrX	153718920	153718921	+	0	NA	promoter-TSS (NM_019848)	promoter-TSS (NM_019848)	82	NM_019848	8273	Hs.522826	NM_001142391	ENSG00000126903	SLC10A3	DXS253E|P3	"solute carrier family 10 (sodium/bile acid cotransporter family), member 3"	protein-coding
chr2.58077680.-	chr2	58077680	58077681	-	0	NA	Intergenic	Intergenic	196097	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr11.48446906.+	chr11	48446906	48446907	+	0	NA	Intergenic	AluYc|SINE|Alu	-63439	NM_001005512	403253	Hs.554532	NM_001005512	ENSG00000237388	OR4A47	OR11-113	"olfactory receptor, family 4, subfamily A, member 47"	protein-coding
chr13.20387492.+	chr13	20387492	20387493	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30333	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr10.88702379.+	chr10	88702379	88702380	+	0	NA	"exon (NM_024756, exon 6 of 7)"	"exon (NM_024756, exon 6 of 7)"	15046	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chr18.33877712.+	chr18	33877712	33877713	+	0	NA	promoter-TSS (NM_025135)	promoter-TSS (NM_025135)	10	NM_025135	80206	Hs.630884	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
chr17.79608966.-	chr17	79608966	79608967	-	0	NA	promoter-TSS (NM_031945)	promoter-TSS (NM_031945)	383	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr17.78397591.-	chr17	78397591	78397592	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4373	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr11.100596582.+	chr11	100596582	100596583	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38175	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr1.79749326.-	chr1	79749326	79749327	-	0	NA	Intergenic	AluSx|SINE|Alu	276831	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr20.48080591.+	chr20	48080591	48080592	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18590	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr20.57575087.-	chr20	57575087	57575088	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7222	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr7.53196232.+	chr7	53196232	53196233	+	0	NA	Intergenic	AluY|SINE|Alu	92883	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr22.29760746.-	chr22	29760746	29760747	-	0	NA	"intron (NM_001127, intron 2 of 22)"	AluSx|SINE|Alu	-23826	NM_001127	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	"adaptor-related protein complex 1, beta 1 subunit"	protein-coding
chr6.138984627.-	chr6	138984627	138984628	-	0	NA	Intergenic	AluSp|SINE|Alu	28178	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr21.46951001.-	chr21	46951001	46951002	-	0	NA	"intron (NM_001205207, intron 2 of 4)"	CpG-17388	-3541	NM_001205207	6573	Hs.736903	NM_001205206	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	"solute carrier family 19 (folate transporter), member 1"	protein-coding
chr2.65360261.-	chr2	65360261	65360262	-	0	NA	Intergenic	AluY|SINE|Alu	2826	NM_015543	5861	Hs.310645	NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	"RAB1A, member RAS oncogene family"	protein-coding
chr22.35696258.-	chr22	35696258	35696259	-	0	NA	"intron (NM_001135732, intron 1 of 14)"	"intron (NM_001135732, intron 1 of 14)"	-461	NM_005488	10043	Hs.474705	NM_001135729	ENSG00000100284	TOM1	-	target of myb1 (chicken)	protein-coding
chr22.18892184.+	chr22	18892184	18892185	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1552	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr20.60392336.+	chr20	60392336	60392337	+	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	136382	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr17.2652861.-	chr17	2652861	2652862	-	0	NA	Intergenic	CpG	1385	NR_031654	100302208		NR_031654	ENSG00000221200	MIR1253	MIRN1253|hsa-mir-1253	microRNA 1253	miscRNA
chrY.15683478.-	chrY	15683478	15683479	-	0	NA	Intergenic	AluYb8|SINE|Alu	90928	NR_047601	7404	Hs.115277	NM_001258249	ENSG00000183878	UTY	UTY1	"ubiquitously transcribed tetratricopeptide repeat containing, Y-linked"	protein-coding
chr1.10727907.+	chr1	10727907	10727908	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128826	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr4.186058045.+	chr4	186058045	186058046	+	0	NA	Intergenic	AluJb|SINE|Alu	-6372	NM_001151	291	Hs.246506	NM_001151		SLC25A4	AAC1|ANT|ANT1|PEO2|PEO3|T1	"solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4"	protein-coding
chr14.38052804.-	chr14	38052804	38052805	-	0	NA	Intergenic	CpG	-11521	NM_004496	3169	Hs.163484	NM_004496	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
chrX.689363.-	chrX	689363	689364	-	0	NA	Intergenic	Intergenic	-104284	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr9.86597330.+	chr9	86597330	86597331	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1693	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr16.30624508.+	chr16	30624508	30624509	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2412	NR_073481	115509	Hs.454685	NM_138447		ZNF689	TIPUH1	zinc finger protein 689	protein-coding
chr2.128432634.-	chr2	128432634	128432635	-	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	-130	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr16.4337522.+	chr16	4337522	4337523	+	0	NA	Intergenic	AluSq2|SINE|Alu	-14521	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4 (activating enhancer binding protein 4)	protein-coding
chr11.67351066.+	chr11	67351066	67351067	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	0	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr3.98624727.-	chr3	98624727	98624728	-	0	NA	Intergenic	AluY|SINE|Alu	4194	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr1.97029505.-	chr1	97029505	97029506	-	0	NA	Intergenic	AluSp|SINE|Alu	157670	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr2.136760839.-	chr2	136760839	136760840	-	0	NA	Intergenic	AluSq2|SINE|Alu	17617	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr7.45750532.-	chr7	45750532	45750533	-	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	-58085	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr7.53103633.-	chr7	53103633	53103634	-	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	-284	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr6.170224354.+	chr6	170224354	170224355	+	0	NA	Intergenic	L1PB1|LINE|L1	-25433	NR_026781	401288	Hs.556095	NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	miscRNA
chr2.242530307.+	chr2	242530307	242530308	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	26609	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr22.46504434.+	chr22	46504434	46504435	+	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	-4195	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr1.149975053.-	chr1	149975053	149975054	-	0	NA	"intron (NM_020205, intron 1 of 11)"	AluY|SINE|Alu	-7633	NM_020205	56957	Hs.98322	NM_020205	ENSG00000163113	OTUD7B	CEZANNE|ZA20D1	OTU domain containing 7B	protein-coding
chr10.28933542.+	chr10	28933542	28933543	+	0	NA	Intergenic	AluSz|SINE|Alu	-32882	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	protein-coding
chr20.33005276.+	chr20	33005276	33005277	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48854	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr7.5396366.+	chr7	5396366	5396367	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66811	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr2.28659532.-	chr2	28659532	28659533	-	0	NA	Intergenic	Intergenic	-43753	NM_005253	2355	Hs.596972	NM_005253		FOSL2	FRA2	FOS-like antigen 2	protein-coding
chr16.89723910.-	chr16	89723910	89723911	-	0	NA	promoter-TSS (NM_153025)	promoter-TSS (NM_153025)	242	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr2.80188699.+	chr2	80188699	80188700	+	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	-312214	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr17.5148738.-	chr17	5148738	5148739	-	0	NA	Intergenic	AluSq|SINE|Alu	10583	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr1.2435593.+	chr1	2435593	2435594	+	0	NA	"exon (NM_014638, exon 22 of 22)"	"exon (NM_014638, exon 22 of 22)"	22442	NM_018216	55229	Hs.26156	NM_018216	ENSG00000157881	PANK4	-	pantothenate kinase 4	protein-coding
chrX.103014791.-	chrX	103014791	103014792	-	0	NA	Intergenic	AluY|SINE|Alu	16648	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr6.127845959.+	chr6	127845959	127845960	+	0	NA	Intergenic	AluY|SINE|Alu	-5459	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr21.38593460.+	chr21	38593460	38593461	+	0	NA	"non-coding (NR_026719, exon 3 of 3)"	"non-coding (NR_026719, exon 3 of 3)"	12656	NR_026719	257203	Hs.505159	NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region gene 9 (non-protein coding)	miscRNA
chr4.26862259.+	chr4	26862259	26862260	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-54	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr4.55034905.+	chr4	55034905	55034906	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60359	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr1.149646798.-	chr1	149646798	149646799	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70345	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr13.62067800.+	chr13	62067800	62067801	+	0	NA	Intergenic	AluY|SINE|Alu	-78145	NM_022843	64881	Hs.391781	NM_022843	ENSG00000197991	PCDH20	PCDH13	protocadherin 20	protein-coding
chr7.1570450.-	chr7	1570450	1570451	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-82	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr1.937257.-	chr1	937257	937258	-	0	NA	Intergenic	CpG-24	1705	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr2.136633754.+	chr2	136633754	136633755	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	293	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr21.37865479.+	chr21	37865479	37865480	+	0	NA	"intron (NM_001146077, intron 2 of 2)"	"intron (NM_001146077, intron 2 of 2)"	-13091	NM_001146079	23562	Hs.741857	NM_001146077	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
chr14.105158935.-	chr14	105158935	105158936	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2992	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr12.75694204.-	chr12	75694204	75694205	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29632	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr6.4780586.+	chr6	4780586	4780587	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3906	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr2.240980328.-	chr2	240980328	240980329	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2071	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr13.62067801.+	chr13	62067801	62067802	+	0	NA	Intergenic	AluY|SINE|Alu	-78146	NM_022843	64881	Hs.391781	NM_022843	ENSG00000197991	PCDH20	PCDH13	protocadherin 20	protein-coding
chr10.12344466.-	chr10	12344466	12344467	-	0	NA	Intergenic	AluSc8|SINE|Alu	47117	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr14.103405425.-	chr14	103405425	103405426	-	0	NA	"intron (NM_006035, intron 34 of 36)"	AluY|SINE|Alu	-16432	NM_030943	81693	Hs.534494	NM_030943	ENSG00000166126	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
chr1.120270206.-	chr1	120270206	120270207	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15787	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr9.140455304.+	chr9	140455304	140455305	+	0	NA	"intron (NM_138778, intron 8 of 8)"	AluY|SINE|Alu	8995	NM_032477	64975	Hs.44017	NM_032477		MRPL41	BMRP|MRP-L27|MRPL27|RPML27	mitochondrial ribosomal protein L41	protein-coding
chr5.134871351.+	chr5	134871351	134871352	+	0	NA	"exon (NM_006161, exon 1 of 1)"	"exon (NM_006161, exon 1 of 1)"	288	NM_006161	4762	Hs.248149	NM_006161	ENSG00000181965	NEUROG1	AKA|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding
chr10.134754223.+	chr10	134754223	134754224	+	0	NA	"intron (NM_001200049, intron 4 of 57)"	AluSx|SINE|Alu	1866	NM_001200049	54777	Hs.719815	NM_001200049	ENSG00000171811	TTC40	C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	tetratricopeptide repeat domain 40	protein-coding
chr17.20747043.-	chr17	20747043	20747044	-	0	NA	Intergenic	CpG	-52410	NM_001004306	339184	Hs.674830	NM_001004306	ENSG00000205212	CCDC144NL	-	"coiled-coil domain containing 144 family, N-terminal like"	protein-coding
chr6.34857484.-	chr6	34857484	34857485	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-446	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr14.100018412.+	chr14	100018412	100018413	+	0	NA	"intron (NM_001144995, intron 1 of 5)"	"intron (NM_001144995, intron 1 of 5)"	52315	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
chr7.1542272.+	chr7	1542272	1542273	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1746	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr8.42272019.+	chr8	42272019	42272020	+	0	NA	Intergenic	AluSg4|SINE|Alu	22740	NM_001135694	7419	Hs.699301	NM_001135694	ENSG00000078668	VDAC3	HD-VDAC3|VDAC-3	voltage-dependent anion channel 3	protein-coding
chr17.7050514.-	chr17	7050514	7050515	-	0	NA	Intergenic	AluSg|SINE|Alu	-32369	NM_001671	432	Hs.731669	NM_001197216	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
chr7.36403844.+	chr7	36403844	36403845	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	2938	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr18.59919501.-	chr18	59919501	59919502	-	0	NA	"intron (NM_020854, intron 11 of 28)"	AluSc|SINE|Alu	-64977	NM_020854	57614	Hs.465323	NM_020854	ENSG00000134444	KIAA1468	HsT3308|HsT885	KIAA1468	protein-coding
chr19.46148728.-	chr19	46148728	46148729	-	0	NA	promoter-TSS (NM_001193268)	promoter-TSS (NM_001193268)	-47	NM_001193268	24139	Hs.24178	NM_001193268	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	echinoderm microtubule associated protein like 2	protein-coding
chr21.33666562.+	chr21	33666562	33666563	+	0	NA	"intron (NM_178817, intron 2 of 4)"	AluY|SINE|Alu	2438	NM_206898	56246	Hs.584940	NM_178817	ENSG00000170262	MRAP	B27|C21orf61|FALP|FGD2|GCCD2	melanocortin 2 receptor accessory protein	protein-coding
chr13.21644867.-	chr13	21644867	21644868	-	0	NA	Intergenic	AluSx|SINE|Alu	9145	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr1.36675716.-	chr1	36675716	36675717	-	0	NA	Intergenic	AluSc8|SINE|Alu	14301	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
chr7.75420393.-	chr7	75420393	75420394	-	0	NA	Intergenic	AluSq2|SINE|Alu	1329	NM_006072	10344	Hs.131342	NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	chemokine (C-C motif) ligand 26	protein-coding
chrX.133565025.+	chrX	133565025	133565026	+	0	NA	Intergenic	AluSp|SINE|Alu	-29150	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr9.39055083.+	chr9	39055083	39055084	+	0	NA	Intergenic	AluY|SINE|Alu	233217	NM_033655	79937	Hs.604441	NM_033655	ENSG00000106714	CNTNAP3	CASPR3|CNTNAP3A|RP11-138L21.1|RP11-290L7.1	contactin associated protein-like 3	protein-coding
chr8.38894852.+	chr8	38894852	38894853	+	0	NA	"intron (NR_027638, intron 11 of 20)"	AluYc3|SINE|Alu	40347	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
chr3.176698901.+	chr3	176698901	176698902	+	0	NA	Intergenic	AluSx3|SINE|Alu	216147	NM_024665	79718	Hs.744001	NM_024665		TBL1XR1	C21|DC42|IRA1|TBLR1	transducin (beta)-like 1 X-linked receptor 1	protein-coding
chr11.47448437.+	chr11	47448437	47448438	+	0	NA	promoter-TSS (NM_002804)	promoter-TSS (NM_002804)	-413	NM_002804	5702	Hs.250758	NM_002804	ENSG00000165916	PSMC3	TBP1	"proteasome (prosome, macropain) 26S subunit, ATPase, 3"	protein-coding
chr7.2691894.+	chr7	2691894	2691895	+	0	NA	"intron (NM_025250, intron 8 of 13)"	"intron (NM_025250, intron 8 of 13)"	20291	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety homolog 3 (Drosophila)	protein-coding
chr16.58300818.-	chr16	58300818	58300819	-	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	-16978	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr15.94464598.-	chr15	94464598	94464599	-	0	NA	Intergenic	LTR2|LTR|ERV1	376832	NM_001159643	55784	Hs.33368	NM_001159643	ENSG00000140563	MCTP2	-	"multiple C2 domains, transmembrane 2"	protein-coding
chrX.133976890.+	chrX	133976890	133976891	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35667	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr11.69189579.-	chr11	69189579	69189580	-	0	NA	Intergenic	Intergenic	-127957	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr17.29425872.+	chr17	29425872	29425873	+	0	NA	"intron (NM_001042492, intron 1 of 57)"	AluY|SINE|Alu	3927	NM_001128147	4763	Hs.113577	NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
chr7.100963596.-	chr7	100963596	100963597	-	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	-1497	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr12.96314633.+	chr12	96314633	96314634	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21795	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr12.49857017.+	chr12	49857017	49857018	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	74060	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr19.4612705.-	chr19	4612705	4612706	-	0	NA	Intergenic	AluY|SINE|Alu	26822	NM_152362	126282	Hs.465643	NM_001167942	ENSG00000185361	TNFAIP8L1	TIPE1	"tumor necrosis factor, alpha-induced protein 8-like 1"	protein-coding
chr13.82774112.-	chr13	82774112	82774113	-	0	NA	Intergenic	AluSx3|SINE|Alu	-1682416	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr5.1067295.-	chr5	1067295	1067296	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4206	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr5.168300396.-	chr5	168300396	168300397	-	0	NA	"intron (NM_003062, intron 5 of 35)"	AluJb|SINE|Alu	105136	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	miscRNA
chr11.17160931.+	chr11	17160931	17160932	+	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	30423	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr2.90482977.-	chr2	90482977	90482978	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1364998	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr16.89058869.+	chr16	89058869	89058870	+	0	NA	Intergenic	Intergenic	-15365	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.203879675.-	chr2	203879675	203879676	-	0	NA	promoter-TSS (NM_001114132)	promoter-TSS (NM_001114132)	-73	NM_001114132	65065	Hs.648846	NM_001099273	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin-like 1	protein-coding
chr15.91389540.+	chr15	91389540	91389541	+	0	NA	Intergenic	AluSx1|SINE|Alu	-22345	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr1.65613648.+	chr1	65613648	65613649	+	0	NA	promoter-TSS (NM_013410)	promoter-TSS (NM_013410)	135	NM_001005353	205	Hs.10862	NM_001005353	ENSG00000162433	AK4	AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
chr19.4065721.-	chr19	4065721	4065722	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1095	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr18.60382580.-	chr18	60382580	60382581	-	0	NA	promoter-TSS (NM_194449)	promoter-TSS (NM_194449)	92	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
chr12.110327027.+	chr12	110327027	110327028	+	0	NA	Intergenic	AluY|SINE|Alu	-8734	NM_016433	51228	Hs.381256	NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
chrX.153095486.+	chrX	153095486	153095487	+	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	517	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr17.18137230.-	chr17	18137230	18137231	-	0	NA	"exon (NM_004140, exon 5 of 23)"	"exon (NM_004140, exon 5 of 23)"	-8294	NM_004140	3996	Hs.513983	NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL	lethal giant larvae homolog 1 (Drosophila)	protein-coding
chr16.89331775.-	chr16	89331775	89331776	-	0	NA	Intergenic	Intergenic	-47664	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chrX.39618264.+	chrX	39618264	39618265	+	0	NA	Intergenic	Intergenic	338455	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr5.18111615.+	chr5	18111615	18111616	+	0	NA	Intergenic	AluY|SINE|Alu	-724196	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr13.45945066.+	chr13	45945066	45945067	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29586	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr1.79749367.-	chr1	79749367	79749368	-	0	NA	Intergenic	AluSx|SINE|Alu	276872	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr8.22594632.-	chr8	22594632	22594633	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43817	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr10.133648820.-	chr10	133648820	133648821	-	0	NA	Intergenic	LTR16A|LTR|ERVL	26285	NR_038365	399827	Hs.523353	NM_001001677	ENSG00000189275	FLJ46300	-	FLJ46300 protein	miscRNA
chrX.54269620.-	chrX	54269620	54269621	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59906	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr21.47403478.-	chr21	47403478	47403479	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1815	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr19.47364577.-	chr19	47364577	47364578	-	0	NA	Intergenic	Intergenic	10374	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr10.4887324.+	chr10	4887324	4887325	+	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	18955	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr15.92290041.-	chr15	92290041	92290042	-	0	NA	Intergenic	AluY|SINE|Alu	106897	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chrM.867.+	chrM	867	868	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr7.104040211.+	chr7	104040211	104040212	+	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	71107	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr5.1144389.+	chr5	1144389	1144390	+	0	NA	Intergenic	Intergenic	-32217	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr3.47411316.-	chr3	47411316	47411317	-	0	NA	Intergenic	AluSq|SINE|Alu	11175	NM_015466	25930	Hs.25524	NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|PTP-TD14	"protein tyrosine phosphatase, non-receptor type 23"	protein-coding
chr22.24237297.-	chr22	24237297	24237298	-	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	-732	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr19.51373871.+	chr19	51373871	51373872	+	0	NA	Intergenic	Intergenic	-2818	NR_045762	3817	Hs.515560	NM_001002231	ENSG00000167751	KLK2	KLK2A2|hGK-1|hK2	kallikrein-related peptidase 2	protein-coding
chr5.138944072.-	chr5	138944072	138944073	-	0	NA	"intron (NM_181838, intron 2 of 7)"	AluSx1|SINE|Alu	-3321	NM_181838	7322	Hs.108332	NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
chr4.29715925.-	chr4	29715925	29715926	-	0	NA	Intergenic	AluY|SINE|Alu	-894721	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	miscRNA
chr2.173292706.+	chr2	173292706	173292707	+	0	NA	"intron (NM_000210, intron 1 of 25)"	CpG	392	NM_001079818	3655	Hs.133397	NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6B|VLA-6	"integrin, alpha 6"	protein-coding
chr10.89762190.+	chr10	89762190	89762191	+	0	NA	Intergenic	AluSq2|SINE|Alu	138995	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
chr6.169648543.+	chr6	169648543	169648544	+	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	5594	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr1.160239895.-	chr1	160239895	160239896	-	0	NA	Intergenic	AluJo|SINE|Alu	7545	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr11.68303163.+	chr11	68303163	68303164	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74977	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr9.137200962.-	chr9	137200962	137200963	-	0	NA	Intergenic	Intergenic	17354	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr14.95511438.-	chr14	95511438	95511439	-	0	NA	Intergenic	Intergenic	-88402	NM_001195573	23405	Hs.87889	NM_001195573	ENSG00000100697	DICER1	DCR1|Dicer|HERNA|MNG1	"dicer 1, ribonuclease type III"	protein-coding
chr19.50326197.-	chr19	50326197	50326198	-	0	NA	"intron (NM_030973, intron 3 of 17)"	AluY|SINE|Alu	-4661	NM_030973	81857	Hs.656639	NM_030973	ENSG00000104973	MED25	ACID1|ARC92|CMT2B2|P78|PTOV2	mediator complex subunit 25	protein-coding
chr2.95787435.-	chr2	95787435	95787436	-	0	NA	"intron (NM_031902, intron 1 of 11)"	CpG	-319	NM_031902	64969	Hs.655259	NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt	mitochondrial ribosomal protein S5	protein-coding
chr20.33062703.-	chr20	33062703	33062704	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8573	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr11.101274586.+	chr11	101274586	101274587	+	0	NA	Intergenic	AluY|SINE|Alu	116050	NR_037485	100500823		NR_037485		MIR3920	-	microRNA 3920	miscRNA
chr16.11746963.-	chr16	11746963	11746964	-	0	NA	Intergenic	AluSx1|SINE|Alu	15326	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr19.14156322.+	chr19	14156322	14156323	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13649	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr8.11312284.+	chr8	11312284	11312285	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11992	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr10.8640544.-	chr10	8640544	8640545	-	0	NA	Intergenic	AluSq2|SINE|Alu	-543877	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr22.18131862.+	chr22	18131862	18131863	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluJb|SINE|Alu	-6566	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr11.1122296.+	chr11	1122296	1122297	+	0	NA	Intergenic	Intergenic	47421	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr7.1286168.-	chr7	1286168	1286169	-	0	NA	Intergenic	CpG	-13514	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr8.61591887.+	chr8	61591887	61591888	+	0	NA	"intron (NM_017780, intron 1 of 37)"	CpG	563	NM_017780	55636	Hs.733236	NM_017780	ENSG00000171316	CHD7	HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
chr21.47838724.-	chr21	47838724	47838725	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40138	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr8.1312659.-	chr8	1312659	1312660	-	0	NA	Intergenic	Intergenic	61832	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr13.21477252.-	chr13	21477252	21477253	-	0	NA	promoter-TSS (NM_022459)	promoter-TSS (NM_022459)	339	NM_022459	64328	Hs.744023	NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
chr2.32276278.+	chr2	32276278	32276279	+	0	NA	Intergenic	AluSg4|SINE|Alu	-11434	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr16.46387489.+	chr16	46387489	46387490	+	0	NA	Intergenic	HSATII|Satellite|Satellite	215520	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr15.83365909.-	chr15	83365909	83365910	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12726	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr2.11817367.+	chr2	11817367	11817368	+	0	NA	promoter-TSS (NM_001261428)	promoter-TSS (NM_001261428)	-338	NM_001261428	23175	Hs.739141	NM_001261427	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
chr7.22396725.+	chr7	22396725	22396726	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-192	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr22.18251532.-	chr22	18251532	18251533	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4507	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr1.80177676.+	chr1	80177676	80177677	+	0	NA	Intergenic	AluSx|SINE|Alu	-705181	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr2.905541.-	chr2	905541	905542	-	0	NA	Intergenic	Intergenic	41013	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr2.242447249.+	chr2	242447249	242447250	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	526	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr1.8021841.-	chr1	8021841	8021842	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-127	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr17.48037707.+	chr17	48037707	48037708	+	0	NA	Intergenic	AluYh9|SINE|Alu	-8855	NM_138281	1748	Hs.591167	NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
chr1.31773672.+	chr1	31773672	31773673	+	0	NA	"intron (NM_016505, intron 1 of 7)"	AluSq2|SINE|Alu	3830	NM_016505	51538	Hs.524094	NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|RP11-266K22.1|pNO40	"zinc finger, CCHC domain containing 17"	protein-coding
chr22.38213298.+	chr22	38213298	38213299	+	0	NA	TTS (NM_014291)	TTS (NM_014291)	-6091	NM_003614	8484	Hs.158353	NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
chr17.78559327.-	chr17	78559327	78559328	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40702	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr3.14349520.+	chr3	14349520	14349521	+	0	NA	Intergenic	Intergenic	-94586	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr19.47364601.+	chr19	47364601	47364602	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10398	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr20.61885499.+	chr20	61885499	61885500	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	169	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr12.70060083.+	chr12	70060083	70060084	+	0	NA	"intron (NM_032735, intron 9 of 9)"	AluSz|SINE|Alu	22973	NM_152439	144453	Hs.280782	NM_032735	ENSG00000127325	BEST3	VMD2L3	bestrophin 3	protein-coding
chr17.65774784.+	chr17	65774784	65774785	+	0	NA	Intergenic	AluSx|SINE|Alu	37998	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr2.10733463.-	chr2	10733463	10733464	-	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	-96650	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr11.100596551.+	chr11	100596551	100596552	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38144	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr8.95668703.+	chr8	95668703	95668704	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15339	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr12.116852032.-	chr12	116852032	116852033	-	0	NA	Intergenic	AluY|SINE|Alu	-14091	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	miscRNA
chr16.112580.-	chr16	112580	112581	-	0	NA	"exon (NM_022450, exon 7 of 18)"	"exon (NM_022450, exon 7 of 18)"	-8751	NM_024571	79622	Hs.15277	NM_024571		SNRNP25	C16orf33	small nuclear ribonucleoprotein 25kDa (U11/U12)	protein-coding
chr2.96149438.-	chr2	96149438	96149439	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1041	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr10.95605025.-	chr10	95605025	95605026	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48705	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr2.71357867.-	chr2	71357867	71357868	-	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-423	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr17.18785204.-	chr17	18785204	18785205	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16422	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chrX.47336605.+	chrX	47336605	47336606	+	0	NA	"intron (NM_153380, intron 1 of 4)"	AluSx1|SINE|Alu	5740	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr7.12736905.+	chr7	12736905	12736906	+	0	NA	Intergenic	AluSg|SINE|Alu	9994	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr16.58016754.-	chr16	58016754	58016755	-	0	NA	"intron (NM_199046, intron 2 of 7)"	AluSz|SINE|Alu	-6415	NM_199456	374739	Hs.132976	NM_199046		TEPP	-	"testis, prostate and placenta expressed"	protein-coding
chr17.78978007.+	chr17	78978007	78978008	+	0	NA	Intergenic	CpG	12366	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr5.145549241.-	chr5	145549241	145549242	-	0	NA	"intron (NM_020117, intron 4 of 31)"	AluSq2|SINE|Alu	-13053	NM_020117	51520	Hs.432674	NM_020117	ENSG00000133706	LARS	HSPC192|LARS1|LEURS|LEUS|LRS|PIG44|RNTLS|hr025Cl	leucyl-tRNA synthetase	protein-coding
chr12.131551512.+	chr12	131551512	131551513	+	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	-98044	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr14.51521321.-	chr14	51521321	51521322	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41101	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr2.213402718.+	chr2	213402718	213402719	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	634	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr9.10786919.-	chr9	10786919	10786920	-	0	NA	Intergenic	AluYc3|SINE|Alu	174196	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr4.77134715.-	chr4	77134715	77134716	-	0	NA	promoter-TSS (NM_001242936)	promoter-TSS (NM_001242936)	-337	NM_005506	950	Hs.349656	NM_001204255	ENSG00000138760	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	"scavenger receptor class B, member 2"	protein-coding
chr1.43460349.+	chr1	43460349	43460350	+	0	NA	Intergenic	AluSp|SINE|Alu	-35502	NM_006516	6513	Hs.473721	NM_006516		SLC2A1	DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED	"solute carrier family 2 (facilitated glucose transporter), member 1"	protein-coding
chr10.12223705.-	chr10	12223705	12223706	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14256	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr11.67758673.+	chr11	67758673	67758674	+	0	NA	TTS (NM_030930)	TTS (NM_030930)	12920	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chr14.20811144.+	chr14	20811144	20811145	+	0	NA	promoter-TSS (NM_005484)	promoter-TSS (NM_005484)	426	NR_002312	85495	Hs.613102	NR_002312	ENSG00000252678	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	miscRNA
chr15.74511241.-	chr15	74511241	74511242	-	0	NA	Intergenic	Intergenic	9195	NM_001199040	64220	Hs.24553	NM_001142617	ENSG00000137868	STRA6	MCOPCB8|MCOPS9	stimulated by retinoic acid 6	protein-coding
chr18.6634711.+	chr18	6634711	6634712	+	0	NA	Intergenic	AluSg|SINE|Alu	123296	NM_001243517	100130480	Hs.646267	NM_001243517	ENSG00000265944	LOC100130480	-	uncharacterized LOC100130480	protein-coding
chr5.138567305.-	chr5	138567305	138567306	-	0	NA	Intergenic	AluY|SINE|Alu	33240	NM_001037633	64374	Hs.483521	NM_001037633	ENSG00000120725	SIL1	BAP|MSS|ULG5	"SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)"	protein-coding
chr4.114652848.+	chr4	114652848	114652849	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30235	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr2.73147296.-	chr2	73147296	73147297	-	0	NA	"intron (NM_004097, intron 1 of 2)"	CpG-15106	-2692	NM_004097	2016	Hs.516090	NM_001040404	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
chr21.37627676.-	chr21	37627676	37627677	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64811	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr2.43595166.-	chr2	43595166	43595167	-	0	NA	"intron (NM_022065, intron 29 of 37)"	AluSc8|SINE|Alu	-140816	NR_027251	100129726	Hs.194480	NM_178529		LOC100129726	-	uncharacterized LOC100129726	miscRNA
chr3.135859555.+	chr3	135859555	135859556	+	0	NA	"intron (NM_001190447, intron 12 of 12)"	AluSp|SINE|Alu	53755	NM_001145417	55167	Hs.18631	NM_001145417	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
chr22.29664706.+	chr22	29664706	29664707	+	0	NA	promoter-TSS (NM_012265)	promoter-TSS (NM_012265)	708	NM_001163287	2130	Hs.374477	NM_001163285	ENSG00000182944	EWSR1	EWS|bK984G1.4	Ewing sarcoma breakpoint region 1	protein-coding
chr17.80431702.-	chr17	80431702	80431703	-	0	NA	"intron (NM_012336, intron 5 of 10)"	AluSz|SINE|Alu	-15162	NM_001083608	26502	Hs.600304	NM_001038618	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
chr11.19881557.-	chr11	19881557	19881558	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99928	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr10.32358173.-	chr10	32358173	32358174	-	0	NA	Intergenic	AluSg7|SINE|Alu	12802	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr16.71647950.-	chr16	71647950	71647951	-	0	NA	Intergenic	AluSz|SINE|Alu	12106	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr11.9346815.+	chr11	9346815	9346816	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10500	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chr11.1853631.-	chr11	1853631	1853632	-	0	NA	Intergenic	Intergenic	2043	NM_138567	90019	Hs.161031	NM_138567	ENSG00000149043	SYT8	-	synaptotagmin VIII	protein-coding
chr6.8388534.-	chr6	8388534	8388535	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47260	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chrX.54371323.-	chrX	54371323	54371324	-	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	-13115	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr19.9450588.+	chr19	9450588	9450589	+	0	NA	"intron (NM_001202408, intron 4 of 5)"	AluY|SINE|Alu	15217	NM_001202425	100529215	Hs.728944	NM_001172650	ENSG00000188629	ZNF559-ZNF177	-	ZNF559-ZNF177 readthrough	protein-coding
chr8.33217778.-	chr8	33217778	33217779	-	0	NA	Intergenic	AluY|SINE|Alu	-112886	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	"fucosyltransferase 10 (alpha (1,3) fucosyltransferase)"	protein-coding
chrM.144.+	chrM	144	145	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.242578490.+	chr2	242578490	242578491	+	0	NA	"intron (NM_178326, intron 1 of 12)"	LTR28|LTR|ERV1	1463	NM_178326	23192	Hs.283610	NM_013325	ENSG00000168397	ATG4B	APG4B|AUTL1	"autophagy related 4B, cysteine peptidase"	protein-coding
chr7.1542248.-	chr7	1542248	1542249	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1770	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr19.13497329.-	chr19	13497329	13497330	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119945	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr17.18560879.-	chr17	18560879	18560880	-	0	NA	TTS (NM_001145045)	TTS (NM_001145045)	13139	NM_001039397	254272	Hs.567880	NM_001039397	ENSG00000189375	TBC1D28	-	"TBC1 domain family, member 28"	protein-coding
chr17.47363964.+	chr17	47363964	47363965	+	0	NA	Intergenic	AluSx|SINE|Alu	38359	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr7.61969347.+	chr7	61969347	61969348	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795087	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr2.198650207.-	chr2	198650207	198650208	-	0	NA	promoter-TSS (NM_033030)	promoter-TSS (NM_033030)	133	NM_033030	66037	Hs.169797	NM_033030	ENSG00000152430	BOLL	BOULE	"bol, boule-like (Drosophila)"	protein-coding
chr22.22550484.+	chr22	22550484	22550485	+	0	NA	Intergenic	Intergenic	-48716	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr2.90482950.+	chr2	90482950	90482951	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365025	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr6.150413229.-	chr6	150413229	150413230	-	0	NA	Intergenic	AluY|SINE|Alu	23027	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr9.12352811.+	chr9	12352811	12352812	+	0	NA	Intergenic	AluY|SINE|Alu	-340575	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr18.48196287.-	chr18	48196287	48196288	-	0	NA	"intron (NM_002747, intron 2 of 5)"	AluY|SINE|Alu	-109803	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr12.27144201.+	chr12	27144201	27144202	+	0	NA	"intron (NM_016551, intron 5 of 11)"	AluYb9|SINE|Alu	23138	NM_016551	51768	Hs.438641	NM_016551		TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
chr4.80166970.-	chr4	80166970	80166971	-	0	NA	"intron (NR_038342, intron 4 of 5)"	SVA_B|Other|Other	-80201	NM_032693	84779	Hs.676048	NM_032693		NAA11	ARD1B|ARD2|hARD2	"N(alpha)-acetyltransferase 11, NatA catalytic subunit"	protein-coding
chr9.108210411.-	chr9	108210411	108210412	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-86	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr3.37052295.+	chr3	37052295	37052296	+	0	NA	"intron (NM_001258271, intron 6 of 16)"	AluSx|SINE|Alu	17027	NM_001167618	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	"mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)"	protein-coding
chr19.17983207.+	chr19	17983207	17983208	+	0	NA	"exon (NM_000453, exon 1 of 15)"	"exon (NM_000453, exon 1 of 15)"	425	NM_000453	6528	Hs.584804	NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	"solute carrier family 5 (sodium iodide symporter), member 5"	protein-coding
chr3.133028695.-	chr3	133028695	133028696	-	0	NA	"intron (NM_023943, intron 3 of 5)"	AluYa5|SINE|Alu	90095	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|LIFL-L|PHAKOSIN	"beaded filament structural protein 2, phakinin"	protein-coding
chr19.34248504.-	chr19	34248504	34248505	-	0	NA	"intron (NM_022467, intron 2 of 3)"	(GAAA)n|Simple_repeat|Simple_repeat	39247	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr4.4041399.-	chr4	4041399	4041400	-	0	NA	Intergenic	AluYb9|SINE|Alu	84251	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chrX.118871987.-	chrX	118871987	118871988	-	0	NA	Intergenic	AluYc|SINE|Alu	20589	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr6.43070139.+	chr6	43070139	43070140	+	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	25587	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr21.29336171.-	chr21	29336171	29336172	-	0	NA	Intergenic	AluY|SINE|Alu	49511	NR_027246	246705	Hs.505079	NM_145180	ENSG00000178457	LINC00314	C21orf94|NCRNA00314	long intergenic non-protein coding RNA 314	miscRNA
chr4.85768650.-	chr4	85768650	85768651	-	0	NA	"intron (NM_014991, intron 5 of 67)"	AluSc8|SINE|Alu	-118894	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr12.116724224.+	chr12	116724224	116724225	+	0	NA	Intergenic	AluY|SINE|Alu	-9233	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr16.341089.+	chr16	341089	341090	+	0	NA	"intron (NM_181050, intron 8 of 9)"	CpG	7971	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr3.149374873.+	chr3	149374873	149374874	+	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	939	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr18.59992429.-	chr18	59992429	59992430	-	0	NA	promoter-TSS (NM_003839)	promoter-TSS (NM_003839)	91	NM_001270951	8792	Hs.621477	NM_001270949	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER	"tumor necrosis factor receptor superfamily, member 11a, NFKB activator"	protein-coding
chr10.6985577.-	chr10	6985577	6985578	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164017	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr19.11190456.-	chr19	11190456	11190457	-	0	NA	Intergenic	AluSg|SINE|Alu	9582	NM_001195799	3949	Hs.713981	NM_000527	ENSG00000130164	LDLR	FH|FHC|LDLCQ2	low density lipoprotein receptor	protein-coding
chr6.168395069.-	chr6	168395069	168395070	-	0	NA	Intergenic	AluSx|SINE|Alu	17450	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chrX.69654776.-	chrX	69654776	69654777	-	0	NA	Intergenic	Intergenic	9929	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr14.80915382.-	chr14	80915382	80915383	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	217985	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr18.34900355.-	chr18	34900355	34900356	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	"intron (NM_001025089, intron 3 of 11)"	-245645	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr9.120507365.+	chr9	120507365	120507366	+	0	NA	Intergenic	CpG	40912	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr2.221058169.-	chr2	221058169	221058170	-	0	NA	Intergenic	MER52A|LTR|ERV1	286883	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr3.12838145.+	chr3	12838145	12838146	+	0	NA	promoter-TSS (NM_001162499)	promoter-TSS (NM_001162499)	-26	NM_012298	23066	Hs.343664	NM_001162499	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding
chr10.42385214.-	chr10	42385214	42385215	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-478279	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr17.4708714.+	chr17	4708714	4708715	+	0	NA	Intergenic	AluSp|SINE|Alu	-1682	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr12.46411952.-	chr12	46411952	46411953	-	0	NA	Intergenic	LTR12C|LTR|ERV1	27551	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr8.14459413.-	chr8	14459413	14459414	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251606	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr3.32863284.+	chr3	32863284	32863285	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3774	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr1.163468390.+	chr1	163468390	163468391	+	0	NA	Intergenic	SVA_A|Other|Other	176667	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr10.131769839.-	chr10	131769839	131769840	-	0	NA	Intergenic	CpG-3433	7748	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr3.30575198.-	chr3	30575198	30575199	-	0	NA	Intergenic	AluY|SINE|Alu	72796	NM_001024847	7048	Hs.604277	NM_001024847	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	"transforming growth factor, beta receptor II (70/80kDa)"	protein-coding
chr19.1433871.+	chr19	1433871	1433872	+	0	NA	"intron (NM_170711, intron 12 of 12)"	"intron (NM_170711, intron 12 of 12)"	-4492	NM_001018	6209	Hs.406683	NM_001018	ENSG00000115268	RPS15	RIG|S15	ribosomal protein S15	protein-coding
chr16.74363431.-	chr16	74363431	74363432	-	0	NA	Intergenic	Intergenic	-32758	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 7"	protein-coding
chr3.51705343.+	chr3	51705343	51705344	+	0	NA	promoter-TSS (NM_001243725)	promoter-TSS (NM_001243725)	53	NM_001243725	51368	Hs.517864	NM_001129884	ENSG00000164081	TEX264	SIG11|ZSIG11	testis expressed 264	protein-coding
chr11.72160503.+	chr11	72160503	72160504	+	0	NA	Intergenic	AluY|SINE|Alu	-14779	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr2.30248619.-	chr2	30248619	30248620	-	0	NA	Intergenic	AluY|SINE|Alu	104142	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr18.29434792.+	chr18	29434792	29434793	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88299	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr2.4156382.-	chr2	4156382	4156383	-	0	NA	Intergenic	CpG	134760	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr19.693364.+	chr19	693364	693365	+	0	NA	"intron (NM_214710, intron 2 of 4)"	AluJb|SINE|Alu	2097	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chr7.95234903.+	chr7	95234903	95234904	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8978	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr5.178157723.+	chr5	178157723	178157724	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-20	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr2.62740964.-	chr2	62740964	62740965	-	0	NA	Intergenic	AluY|SINE|Alu	7360	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr1.151742005.+	chr1	151742005	151742006	+	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	2874	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr4.5710195.+	chr4	5710195	5710196	+	0	NA	promoter-TSS (NM_147127)	promoter-TSS (NM_147127)	99	NM_147127	132884	Hs.87306	NM_001166136	ENSG00000173040	EVC2	LBN	Ellis van Creveld syndrome 2	protein-coding
chr15.91370827.+	chr15	91370827	91370828	+	0	NA	Intergenic	AluSz|SINE|Alu	-41058	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr1.52945429.-	chr1	52945429	52945430	-	0	NA	"intron (NM_001009881, intron 11 of 29)"	AluY|SINE|Alu	-73333	NM_001009881	23318	Hs.655407	NM_001009882	ENSG00000134744	ZCCHC11	PAPD3|TUT4	"zinc finger, CCHC domain containing 11"	protein-coding
chr10.120946134.+	chr10	120946134	120946135	+	0	NA	Intergenic	AluY|SINE|Alu	-7789	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr16.895258.-	chr16	895258	895259	-	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-39815	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr3.88595857.-	chr3	88595857	88595858	-	0	NA	Intergenic	AluSc8|SINE|Alu	396841	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr11.9243427.+	chr11	9243427	9243428	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43446	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr2.240402021.+	chr2	240402021	240402022	+	0	NA	Intergenic	Intergenic	-79378	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr20.62479323.+	chr20	62479323	62479324	+	0	NA	Intergenic	Intergenic	-13243	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr2.181845008.-	chr2	181845008	181845009	-	0	NA	promoter-TSS (NM_006357)	promoter-TSS (NM_006357)	104	NM_182678	10477	Hs.470804	NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chr5.22207069.+	chr5	22207069	22207070	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64608	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr8.145703524.-	chr8	145703524	145703525	-	0	NA	Intergenic	CpG	1806	NM_003923	8928	Hs.708365	NM_003923	ENSG00000160973	FOXH1	FAST-1|FAST1	forkhead box H1	protein-coding
chr3.185305617.-	chr3	185305617	185305618	-	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	-1586	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr11.89900035.+	chr11	89900035	89900036	+	0	NA	"intron (NM_005467, intron 11 of 18)"	"intron (NM_005467, intron 11 of 18)"	32217	NM_005467	10003	Hs.503560	NM_005467	ENSG00000077616	NAALAD2	GCPIII|GPCIII|NAADALASE2|NAALADASE2	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding
chrX.88129162.-	chrX	88129162	88129163	-	0	NA	Intergenic	AluY|SINE|Alu	-126936	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chrX.90204177.+	chrX	90204177	90204178	+	0	NA	Intergenic	AluY|SINE|Alu	-485420	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr8.11030669.+	chr8	11030669	11030670	+	0	NA	"intron (NM_173683, intron 1 of 2)"	AluY|SINE|Alu	28206	NM_173683	286046	Hs.666146	NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	"XK, Kell blood group complex subunit-related family, member 6"	protein-coding
chr8.56098946.-	chr8	56098946	56098947	-	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	-83929	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr16.84670292.-	chr16	84670292	84670293	-	0	NA	Intergenic	AluY|SINE|Alu	11839	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr12.1044136.-	chr12	1044136	1044137	-	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	-14727	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr1.6094744.+	chr1	6094744	6094745	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	396	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr4.42658293.+	chr4	42658293	42658294	+	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	829	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr5.14460469.+	chr5	14460469	14460470	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121422	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr7.21370288.-	chr7	21370288	21370289	-	0	NA	Intergenic	MER52D|LTR|ERV1	97401	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr6.64246117.+	chr6	64246117	64246118	+	0	NA	Intergenic	AluSq|SINE|Alu	-35803	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr1.201186409.+	chr1	201186409	201186410	+	0	NA	"intron (NM_001164586, intron 16 of 23)"	"intron (NM_001164586, intron 16 of 23)"	26456	NM_001164586	91156	Hs.519024	NM_001164586	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
chr20.62479285.+	chr20	62479285	62479286	+	0	NA	Intergenic	Intergenic	-13281	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr16.656871.+	chr16	656871	656872	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16698	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr12.98654397.-	chr12	98654397	98654398	-	0	NA	Intergenic	AluSz|SINE|Alu	-196526	NR_033801	121456	Hs.620643	NR_033801	ENSG00000227825	SLC9A7P1	-	"solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1"	pseudo
chr9.16766066.-	chr9	16766066	16766067	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104720	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr4.6303245.-	chr4	6303245	6303246	-	0	NA	"exon (NM_006005, exon 8 of 8)"	"exon (NM_006005, exon 8 of 8)"	-31668	NM_006005	7466	Hs.727283	NM_001145853	ENSG00000109501	WFS1	WFRS|WFS|WFSL	Wolfram syndrome 1 (wolframin)	protein-coding
chr2.232557222.+	chr2	232557222	232557223	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16013	NM_002823	5757	Hs.459927	NM_001099285	ENSG00000187514	PTMA	TMSA	"prothymosin, alpha"	protein-coding
chr6.151727614.+	chr6	151727614	151727615	+	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	-14937	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr10.42385215.+	chr10	42385215	42385216	+	0	NA	Intergenic	HSATII|Satellite|Satellite	478278	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr2.239942431.-	chr2	239942431	239942432	-	0	NA	Intergenic	Intergenic	-48179	NR_039642	100616397		NR_039642		MIR4440	-	microRNA 4440	miscRNA
chr2.202721849.-	chr2	202721849	202721850	-	0	NA	"intron (NM_139158, intron 10 of 13)"	AluYb8|SINE|Alu	-50547	NM_001261436	65061	Hs.348711	NM_001261435	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin-dependent kinase 15	protein-coding
chr12.11974595.+	chr12	11974595	11974596	+	0	NA	"intron (NR_046487, intron 1 of 3)"	AluJr|SINE|Alu	104512	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19	-	"RNA, U6 small nuclear 19"	snRNA
chr14.20680807.+	chr14	20680807	20680808	+	0	NA	Intergenic	SVA_D|Other|Other	-11062	NM_001004480	122748	Hs.553575	NM_001004480	ENSG00000176219	OR11H6	-	"olfactory receptor, family 11, subfamily H, member 6"	protein-coding
chr11.86934385.-	chr11	86934385	86934386	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-185499	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr22.46929364.+	chr22	46929364	46929365	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3703	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr4.106817235.+	chr4	106817235	106817236	+	0	NA	"intron (NM_001033047, intron 1 of 11)"	CpG	638	NM_001184690	255743	Hs.518921	NM_198278	ENSG00000168743	NPNT	EGFL6L|POEM	nephronectin	protein-coding
chr6.126111921.-	chr6	126111921	126111922	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-12	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr5.117912691.+	chr5	117912691	117912692	+	0	NA	Intergenic	AluY|SINE|Alu	-397590	NR_036262	100422885		NR_036262		MIR1244-2	-	microRNA 1244-2	miscRNA
chr11.74107020.-	chr11	74107020	74107021	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2482	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr1.10727955.-	chr1	10727955	10727956	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128778	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr4.178730112.-	chr4	178730112	178730113	-	0	NA	"intron (NR_028342, intron 2 of 5)"	AluY|SINE|Alu	-80201	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LOC285501	-	uncharacterized LOC285501	miscRNA
chr9.108210389.-	chr9	108210389	108210390	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-64	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr19.21395687.+	chr19	21395687	21395688	+	0	NA	Intergenic	SVA_B|Other|Other	70847	NM_133473	170959	Hs.687547	NM_133473	ENSG00000196705	ZNF431	-	zinc finger protein 431	protein-coding
chr19.49186340.+	chr19	49186340	49186341	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10076	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr10.100730014.-	chr10	100730014	100730015	-	0	NA	"intron (NM_021828, intron 3 of 11)"	AluSq2|SINE|Alu	-265618	NM_001166244	60495	Hs.689544	NM_001166244		HPSE2	HPA2|HPR2|UFS|UFS1	heparanase 2	protein-coding
chr8.6812584.-	chr8	6812584	6812585	-	0	NA	Intergenic	AluSp|SINE|Alu	3463	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr2.44294156.+	chr2	44294156	44294157	+	0	NA	Intergenic	SVA_D|Other|Other	-71012	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr16.89117863.-	chr16	89117863	89117864	-	0	NA	Intergenic	Intergenic	42354	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr17.74694436.+	chr17	74694436	74694437	+	0	NA	"intron (NM_001008529, intron 1 of 4)"	"intron (NM_001008529, intron 1 of 4)"	12620	NM_198530	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr5.76691099.+	chr5	76691099	76691100	+	0	NA	"intron (NM_001029853, intron 9 of 20)"	AluY|SINE|Alu	97233	NM_018268	55255	Hs.482573	NM_018268		WDR41	-	WD repeat domain 41	protein-coding
chr16.8974123.+	chr16	8974123	8974124	+	0	NA	Intergenic	Intergenic	-11260	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr16.85009396.+	chr16	85009396	85009397	+	0	NA	"3' UTR (NM_017740, exon 8 of 8)"	"3' UTR (NM_017740, exon 8 of 8)"	35745	NM_017740	55625	Hs.723447	NM_001145548	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	"zinc finger, DHHC-type containing 7"	protein-coding
chr8.6812639.+	chr8	6812639	6812640	+	0	NA	Intergenic	AluSp|SINE|Alu	-3518	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr2.37898420.-	chr2	37898420	37898421	-	0	NA	"intron (NM_001270436, intron 1 of 1)"	CpG	-922	NM_006449	10602	Hs.369574	NM_001270436	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
chr9.131293156.-	chr9	131293156	131293157	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21681	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr16.2390999.-	chr16	2390999	2391000	-	0	NA	promoter-TSS (NR_003574)	promoter-TSS (NR_003574)	-76	NR_003574	650655	Hs.376281	NR_003574	ENSG00000238098	ABCA17P	ABCA17	"ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene"	pseudo
chr11.73020391.+	chr11	73020391	73020392	+	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	728	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr2.240980333.-	chr2	240980333	240980334	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2066	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr4.3440415.-	chr4	3440415	3440416	-	0	NA	"intron (NM_198227, intron 15 of 15)"	"intron (NM_198227, intron 15 of 15)"	3311	NM_001528	3083	Hs.104	NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
chr20.39978476.+	chr20	39978476	39978477	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8916	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr11.5315874.-	chr11	5315874	5315875	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7302	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr1.113544087.+	chr1	113544087	113544088	+	0	NA	Intergenic	AluY|SINE|Alu	-45112	NM_003051	6566	Hs.75231	NM_001166496	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1	"solute carrier family 16, member 1 (monocarboxylic acid transporter 1)"	protein-coding
chr2.239942425.-	chr2	239942425	239942426	-	0	NA	Intergenic	Intergenic	-48185	NR_039642	100616397		NR_039642		MIR4440	-	microRNA 4440	miscRNA
chrX.153095516.-	chrX	153095516	153095517	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-487	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr7.1889558.+	chr7	1889558	1889559	+	0	NA	"intron (NM_001013836, intron 18 of 18)"	"intron (NM_001013836, intron 18 of 18)"	-5669	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr15.72816636.-	chr15	72816636	72816637	-	0	NA	"intron (NM_005744, intron 2 of 13)"	AluSz|SINE|Alu	-49969	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	"ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)"	protein-coding
chr2.7148778.-	chr2	7148778	7148779	-	0	NA	"intron (NM_014746, intron 3 of 8)"	"intron (NM_014746, intron 3 of 8)"	89965	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	miscRNA
chr7.158268171.+	chr7	158268171	158268172	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57334	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr11.77200936.+	chr11	77200936	77200937	+	0	NA	Intergenic	SVA_D|Other|Other	-15828	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr22.24563087.+	chr22	24563087	24563088	+	0	NA	"exon (NM_001201429, exon 31 of 36)"	"exon (NM_001201429, exon 31 of 36)"	-14357	NM_019601	56241	Hs.131819	NM_019601	ENSG00000099994	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
chr18.60413439.+	chr18	60413439	60413440	+	0	NA	"intron (NM_194449, intron 1 of 16)"	AluSp|SINE|Alu	30767	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
chr8.26486444.-	chr8	26486444	26486445	-	0	NA	"intron (NM_001244604, intron 7 of 13)"	"intron (NM_001244604, intron 7 of 13)"	-50523	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr9.133922890.+	chr9	133922890	133922891	+	0	NA	"intron (NM_006059, intron 8 of 27)"	Charlie1b|DNA|hAT-Charlie	38386	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	"laminin, gamma 3"	protein-coding
chr2.107104052.+	chr2	107104052	107104053	+	0	NA	Intergenic	CpG	-19251	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chrX.39680365.-	chrX	39680365	39680366	-	0	NA	Intergenic	CpG	-276354	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr8.142011518.+	chr8	142011518	142011519	+	0	NA	promoter-TSS (NM_005607)	promoter-TSS (NM_005607)	-106	NM_001199649	5747	Hs.395482	NM_001199649	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
chr16.48542720.+	chr16	48542720	48542721	+	0	NA	Intergenic	LTR12C|LTR|ERV1	101400	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
chr2.10127188.+	chr2	10127188	10127189	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSz6|SINE|Alu	35396	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr17.2721875.+	chr17	2721875	2721876	+	0	NA	"intron (NM_015085, intron 2 of 24)"	AluSz|SINE|Alu	22143	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr19.18180373.-	chr19	18180373	18180374	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17324	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr2.70416479.+	chr2	70416479	70416480	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	1672	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr8.54998376.+	chr8	54998376	54998377	+	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	16201	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr4.123063310.-	chr4	123063310	123063311	-	0	NA	Intergenic	AluSg7|SINE|Alu	28448	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr12.14396181.+	chr12	14396181	14396182	+	0	NA	Intergenic	AluSc|SINE|Alu	-122430	NM_018179	55729	Hs.591151	NM_018179	ENSG00000171681	ATF7IP	AM|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
chr2.137180628.+	chr2	137180628	137180629	+	0	NA	Intergenic	AluSq2|SINE|Alu	-304903	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr10.123791035.-	chr10	123791035	123791036	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42346	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr6.168209551.-	chr6	168209551	168209552	-	0	NA	Intergenic	AluSq|SINE|Alu	12012	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr2.62612401.+	chr2	62612401	62612402	+	0	NA	Intergenic	AluSg|SINE|Alu	121203	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr1.54966393.-	chr1	54966393	54966394	-	0	NA	Intergenic	AluSq|SINE|Alu	47414	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr11.3224512.+	chr11	3224512	3224513	+	0	NA	Intergenic	Intergenic	-15050	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr17.38498497.-	chr17	38498497	38498498	-	0	NA	"5' UTR (NM_001024809, exon 1 of 8)"	"5' UTR (NM_001024809, exon 1 of 8)"	-226	NM_001024809	5914	Hs.654583	NM_000964		RARA	NR1B1|RAR	"retinoic acid receptor, alpha"	protein-coding
chr10.133016160.-	chr10	133016160	133016161	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93824	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr7.26294444.-	chr7	26294444	26294445	-	0	NA	Intergenic	AluSx1|SINE|Alu	37071	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr1.78230541.-	chr1	78230541	78230542	-	0	NA	Intergenic	AluSz|SINE|Alu	4977	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr10.4887125.-	chr10	4887125	4887126	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18756	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr11.133763873.-	chr11	133763873	133763874	-	0	NA	Intergenic	AluY|SINE|Alu	-4603	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr19.47364561.+	chr19	47364561	47364562	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-10358	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr5.13578979.-	chr5	13578979	13578980	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-365610	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	"dynein, axonemal, heavy chain 5"	protein-coding
chr3.128194216.-	chr3	128194216	128194217	-	0	NA	Intergenic	Intergenic	8125	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr5.41712433.+	chr5	41712433	41712434	+	0	NA	Intergenic	AluY|SINE|Alu	158358	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA transferase 1	protein-coding
chr8.43413702.+	chr8	43413702	43413703	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	266117	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr5.86907782.-	chr5	86907782	86907783	-	0	NA	Intergenic	AluY|SINE|Alu	198932	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr2.131551991.+	chr2	131551991	131551992	+	0	NA	Intergenic	AluY|SINE|Alu	38127	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr2.237068270.-	chr2	237068270	237068271	-	0	NA	Intergenic	CpG	-8382	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr17.78559319.-	chr17	78559319	78559320	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40694	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr1.16481219.-	chr1	16481219	16481220	-	0	NA	"intron (NM_004431, intron 1 of 16)"	AluSq2|SINE|Alu	-1363	NM_004431	1969	Hs.171596	NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|ECK	EPH receptor A2	protein-coding
chr7.158504090.+	chr7	158504090	158504091	+	0	NA	Intergenic	AluY|SINE|Alu	-6570	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr18.66365992.+	chr18	66365992	66365993	+	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	16361	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr1.32679380.-	chr1	32679380	32679381	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4685	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chrX.53808348.+	chrX	53808348	53808349	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94651	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr10.94122289.+	chr10	94122289	94122290	+	0	NA	Intergenic	AluSg|SINE|Alu	-56129	NR_038243	100507674	Hs.742186	NR_038243		MARK2P9	-	MAP/microtubule affinity-regulating kinase 2 pseudogene 9	pseudo
chr1.567428.+	chr1	567428	567429	+	0	NA	Intergenic	Intergenic	54606	NM_001005224	26683	Hs.722724	NM_001005224	ENSG00000230178	OR4F3	-	"olfactory receptor, family 4, subfamily F, member 3"	protein-coding
chr9.141038876.-	chr9	141038876	141038877	-	0	NA	Intergenic	Intergenic	5689	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr7.150812734.-	chr7	150812734	150812735	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28908	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr5.139283507.-	chr5	139283507	139283508	-	0	NA	"intron (NM_001184935, intron 1 of 7)"	CpG	-108101	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
chr7.128142034.-	chr7	128142034	128142035	-	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	-25251	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr2.202092565.+	chr2	202092565	202092566	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5601	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr14.102109495.+	chr14	102109495	102109496	+	0	NA	Intergenic	AluY|SINE|Alu	81807	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr3.795627.+	chr3	795627	795628	+	0	NA	Intergenic	AluY|SINE|Alu	-339002	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr12.123259465.+	chr12	123259465	123259466	+	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	409	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chr6.33811480.+	chr6	33811480	33811481	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39687	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr2.905921.+	chr2	905921	905922	+	0	NA	Intergenic	Intergenic	-40633	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr2.70199619.-	chr2	70199619	70199620	-	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	10222	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr4.163164044.+	chr4	163164044	163164045	+	0	NA	Intergenic	AluY|SINE|Alu	-78858	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr12.127944444.-	chr12	127944444	127944445	-	0	NA	Intergenic	Intergenic	421718	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr15.22698204.-	chr15	22698204	22698205	-	0	NA	Intergenic	AluJb|SINE|Alu	-17524	NR_027407	100132979	Hs.592025	NR_027407		GOLGA8DP	GOLGA8D	"golgin A8 family, member D, pseudogene"	pseudo
chr5.108146244.+	chr5	108146244	108146245	+	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	62721	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chr14.93690114.-	chr14	93690114	93690115	-	0	NA	"intron (NR_038150, intron 9 of 9)"	CpG	16655	NM_032490	84520	Hs.20142	NM_032490	ENSG00000170270	C14orf142	PNAS-127	chromosome 14 open reading frame 142	protein-coding
chr7.40164643.-	chr7	40164643	40164644	-	0	NA	Intergenic	AluY|SINE|Alu	-9608	NM_138701	136647	Hs.654989	NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20	M-phase specific PLK1 interacting protein	protein-coding
chr17.48631003.-	chr17	48631003	48631004	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6553	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chrX.15026773.+	chrX	15026773	15026774	+	0	NA	Intergenic	AluY|SINE|Alu	123360	NM_001177475	158747	Hs.190043	NM_001177475		MOSPD2	-	motile sperm domain containing 2	protein-coding
chr9.138065694.-	chr9	138065694	138065695	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7761	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr16.60255818.-	chr16	60255818	60255819	-	0	NA	Intergenic	AluSc8|SINE|Alu	466723	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr21.34914884.+	chr21	34914884	34914885	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	311	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr4.96097979.+	chr4	96097979	96097980	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85337	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr2.177024213.-	chr2	177024213	177024214	-	0	NA	Intergenic	Intergenic	4592	NM_006898	3232	Hs.93574	NM_006898		HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
chr19.2307935.-	chr19	2307935	2307936	-	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	-221	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr16.1123365.-	chr16	1123365	1123366	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-609	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr2.25758481.-	chr2	25758481	25758482	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114610	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr6.80035335.-	chr6	80035335	80035336	-	0	NA	Intergenic	L1PA4|LINE|L1	90880	NM_004242	9324	Hs.77558	NM_001201362	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chrX.13062319.+	chrX	13062319	13062320	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	598	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr1.61549221.-	chr1	61549221	61549222	-	0	NA	"intron (NM_005595, intron 1 of 9)"	CpG	-1241	NM_001134673	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr6.163113528.-	chr6	163113528	163113529	-	0	NA	"intron (NM_004562, intron 1 of 11)"	MER77|LTR|ERVL	34636	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr20.43342066.-	chr20	43342066	43342067	-	0	NA	Intergenic	AluSx|SINE|Alu	1819	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr1.182234382.+	chr1	182234382	182234383	+	0	NA	Intergenic	AluJb|SINE|Alu	126157	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr16.67594768.-	chr16	67594768	67594769	-	0	NA	Intergenic	AluSx|SINE|Alu	1542	NM_006565	10664	Hs.368367	NM_001191022	ENSG00000102974	CTCF	-	CCCTC-binding factor (zinc finger protein)	protein-coding
chr19.58963028.-	chr19	58963028	58963029	-	0	NA	promoter-TSS (NM_207395)	promoter-TSS (NM_207395)	-57	NM_207395	388569	Hs.186970	NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
chr3.52453742.+	chr3	52453742	52453743	+	0	NA	"intron (NM_016483, intron 4 of 10)"	AluY|SINE|Alu	9215	NM_173341	51533	Hs.372719	NM_016483	ENSG00000010318	PHF7	HSPC045|HSPC226|NYD-SP6	PHD finger protein 7	protein-coding
chr20.33062706.-	chr20	33062706	33062707	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8576	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr18.73357749.+	chr18	73357749	73357750	+	0	NA	Intergenic	L2|LINE|L2	-218160	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr8.74760114.+	chr8	74760114	74760115	+	0	NA	"intron (NM_001271015, intron 1 of 5)"	AluSq2|SINE|Alu	31031	NR_073119	55284	Hs.128841	NM_001001481	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin-conjugating enzyme E2W (putative)	protein-coding
chr8.144100445.-	chr8	144100445	144100446	-	0	NA	promoter-TSS (NR_026913)	promoter-TSS (NR_026913)	-543	NM_002346	4061	Hs.521903	NM_001127213	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	"lymphocyte antigen 6 complex, locus E"	protein-coding
chr1.6132088.+	chr1	6132088	6132089	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25914	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr19.982874.+	chr19	982874	982875	+	0	NA	Intergenic	CpG	-1454	NM_024100	57418	Hs.325321	NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
chr9.100993042.+	chr9	100993042	100993043	+	0	NA	"intron (NR_051978, intron 3 of 11)"	AluSz|SINE|Alu	-17209	NM_001267572	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	"TBC1 domain family, member 2"	protein-coding
chr4.5981995.-	chr4	5981995	5981996	-	0	NA	Intergenic	Intergenic	56940	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	-	microRNA 378d-1	miscRNA
chrX.40029656.-	chrX	40029656	40029657	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6926	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr8.103794942.-	chr8	103794942	103794943	-	0	NA	Intergenic	Intergenic	-81455	NM_148174	51582	Hs.459106	NM_015878	ENSG00000155096	AZIN1	OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
chr5.178491465.+	chr5	178491465	178491466	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	3858	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr9.138065689.-	chr9	138065689	138065690	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7766	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr9.116102482.+	chr9	116102482	116102483	+	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	138	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr8.63951669.+	chr8	63951669	63951670	+	0	NA	promoter-TSS (NM_003878)	promoter-TSS (NM_003878)	-59	NM_003878	8836	Hs.78619	NM_003878	ENSG00000137563	GGH	GH	"gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)"	protein-coding
chr10.11970471.-	chr10	11970471	11970472	-	0	NA	"intron (NM_015542, intron 21 of 21)"	AluY|SINE|Alu	33762	NR_038222	219731	Hs.576787	NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	miscRNA
chr7.128141917.+	chr7	128141917	128141918	+	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	25134	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr4.103422425.+	chr4	103422425	103422426	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-61	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr12.52546235.-	chr12	52546235	52546236	-	0	NA	Intergenic	CpG	-39549	NM_182507	144501	Hs.140978	NM_001081492	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
chr16.632095.-	chr16	632095	632096	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7262	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr10.7626553.+	chr10	7626553	7626554	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35083	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chrX.145183516.+	chrX	145183516	145183517	+	0	NA	Intergenic	AluJb|SINE|Alu	-74126	NR_030581	100126341		NR_030581	ENSG00000216056	MIR891A	MIRN891A	microRNA 891a	miscRNA
chr13.21363803.+	chr13	21363803	21363804	+	0	NA	"intron (NM_022459, intron 19 of 22)"	AluY|SINE|Alu	-15746	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
chr22.50699606.+	chr22	50699606	50699607	+	0	NA	"exon (NM_002969, exon 2 of 12)"	"exon (NM_002969, exon 2 of 12)"	483	NM_002969	6300	Hs.432642	XM_003846644	ENSG00000188130	MAPK12	ERK3|ERK6|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
chr19.55845435.+	chr19	55845435	55845436	+	0	NA	Intergenic	Intergenic	-5786	NM_032701	84787	Hs.590982	NM_032701	ENSG00000133247	SUV420H2	KMT5C	suppressor of variegation 4-20 homolog 2 (Drosophila)	protein-coding
chr9.135947041.-	chr9	135947041	135947042	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9676	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr2.85638935.+	chr2	85638935	85638936	+	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	-1115	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr11.45810316.-	chr11	45810316	45810317	-	0	NA	Intergenic	AluSz6|SINE|Alu	15307	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr6.37138339.-	chr6	37138339	37138340	-	0	NA	"exon (NM_001243186, exon 1 of 6)"	"exon (NM_001243186, exon 1 of 6)"	-417	NM_001243186	5292	Hs.81170	NM_001243186	ENSG00000137193	PIM1	PIM	pim-1 oncogene	protein-coding
chr16.22675577.+	chr16	22675577	22675578	+	0	NA	Intergenic	AluJr|SINE|Alu	-54026	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr6.45365120.-	chr6	45365120	45365121	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19332	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr12.117605459.-	chr12	117605459	117605460	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22841	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr3.28951297.+	chr3	28951297	28951298	+	0	NA	Intergenic	AluY|SINE|Alu	334528	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr17.18755435.-	chr17	18755435	18755436	-	0	NA	Intergenic	AluSp|SINE|Alu	4177	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chrX.54269571.-	chrX	54269571	54269572	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59857	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr18.63211108.-	chr18	63211108	63211109	-	0	NA	Intergenic	AluY|SINE|Alu	206380	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr16.89034210.+	chr16	89034210	89034211	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9294	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr12.118812087.+	chr12	118812087	118812088	+	0	NA	Intergenic	AluSx|SINE|Alu	-1337	NM_016281	51347	Hs.644420	NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
chr7.22396701.+	chr7	22396701	22396702	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-168	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr2.19560979.-	chr2	19560979	19560980	-	0	NA	Intergenic	CpG	2607	NM_145260	130497	Hs.123933	NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related 1 (Drosophila)	protein-coding
chr2.85499726.-	chr2	85499726	85499727	-	0	NA	"intron (NM_031283, intron 3 of 11)"	AluJr|SINE|Alu	-55693	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chrX.69654680.-	chrX	69654680	69654681	-	0	NA	Intergenic	Intergenic	10025	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chrX.133565053.+	chrX	133565053	133565054	+	0	NA	Intergenic	AluSp|SINE|Alu	-29122	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr16.78590758.-	chr16	78590758	78590759	-	0	NA	"intron (NM_016373, intron 8 of 8)"	AluSq|SINE|Alu	-457431	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chrX.44169601.+	chrX	44169601	44169602	+	0	NA	"intron (NM_025184, intron 2 of 14)"	CpG	33322	NM_025184	80258	Hs.521953	NM_025184	ENSG00000183690	EFHC2	dJ1158H2.1	EF-hand domain (C-terminal) containing 2	protein-coding
chr1.28703573.+	chr1	28703573	28703574	+	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	7480	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr20.4729559.+	chr20	4729559	4729560	+	0	NA	Intergenic	Intergenic	-8245	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr1.10989804.+	chr1	10989804	10989805	+	0	NA	Intergenic	AluSq|SINE|Alu	52290	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chr19.3220553.+	chr19	3220553	3220554	+	0	NA	Intergenic	AluSz|SINE|Alu	-4148	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr7.54614229.+	chr7	54614229	54614230	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4210	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr12.31229249.+	chr12	31229249	31229250	+	0	NA	"intron (NM_004399, intron 1 of 25)"	MLT1M|LTR|ERVL-MaLR	-2468	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	-	DDX11 antisense RNA 1	miscRNA
chr20.62512941.-	chr20	62512941	62512942	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13514	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr17.57884682.-	chr17	57884682	57884683	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33945	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr20.33062683.-	chr20	33062683	33062684	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8553	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr18.11959819.+	chr18	11959819	11959820	+	0	NA	Intergenic	SVA_D|Other|Other	-21608	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr22.20104734.-	chr22	20104734	20104735	-	0	NA	promoter-TSS (NM_022727)	promoter-TSS (NM_022727)	-84	NM_022727	27037	Hs.713579	NM_001257994	ENSG00000099899	TRMT2A	HTF9C	tRNA methyltransferase 2 homolog A (S. cerevisiae)	protein-coding
chr10.134034474.-	chr10	134034474	134034475	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34060	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr1.43189311.-	chr1	43189311	43189312	-	0	NA	Intergenic	AluJr|SINE|Alu	-16614	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr6.7051300.-	chr6	7051300	7051301	-	0	NA	Intergenic	Intergenic	56530	NM_001168344	6239	Hs.298248	NM_001003698	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
chr1.937233.+	chr1	937233	937234	+	0	NA	Intergenic	CpG-24	-1681	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr12.127940602.-	chr12	127940602	127940603	-	0	NA	Intergenic	CpG	425560	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr2.242500503.+	chr2	242500503	242500504	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1945	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr10.59080722.-	chr10	59080722	59080723	-	0	NA	Intergenic	AluY|SINE|Alu	16403	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr8.22594686.+	chr8	22594686	22594687	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43871	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr16.4835237.-	chr16	4835237	4835238	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3161	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr14.55493794.-	chr14	55493794	55493795	-	0	NA	promoter-TSS (NM_001008396)	promoter-TSS (NM_001008396)	-25	NM_007086	11169	Hs.385998	NM_001008396	ENSG00000198554	WDHD1	AND-1|CHTF4|CTF4	WD repeat and HMG-box DNA binding protein 1	protein-coding
chr5.40801250.-	chr5	40801250	40801251	-	0	NA	Intergenic	SVA_E|Other|Other	2953	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr4.76850101.+	chr4	76850101	76850102	+	0	NA	"intron (NM_001042402, intron 4 of 8)"	AluY|SINE|Alu	12065	NM_014435	27163	Hs.437365	NM_001042402	ENSG00000138744	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
chr19.49061656.+	chr19	49061656	49061657	+	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	6227	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr11.66165614.-	chr11	66165614	66165615	-	0	NA	Intergenic	AluSg|SINE|Alu	22861	NM_178864	266743	Hs.256036	NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
chr12.122479173.+	chr12	122479173	122479174	+	0	NA	"intron (NM_001024808, intron 3 of 5)"	MIRb|SINE|MIR	19312	NM_001024808	605	Hs.530970	NM_001024808		BCL7A	BCL7	B-cell CLL/lymphoma 7A	protein-coding
chr5.91967010.+	chr5	91967010	91967011	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939489	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr18.19632309.-	chr18	19632309	19632310	-	0	NA	Intergenic	AluSg4|SINE|Alu	117095	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr17.78189890.-	chr17	78189890	78189891	-	0	NA	"intron (NM_000199, intron 2 of 7)"	AluSz|SINE|Alu	-4309	NM_000199	6448	Hs.31074	NM_000199	ENSG00000181523	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
chr7.6304961.-	chr7	6304961	6304962	-	0	NA	"intron (NM_004227, intron 1 of 12)"	MER58C|DNA|hAT-Charlie	-7281	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
chr22.41913490.-	chr22	41913490	41913491	-	0	NA	"intron (NM_001098, intron 6 of 17)"	"intron (NM_001098, intron 6 of 17)"	-26986	NM_138338	171568	Hs.712617	NM_001018051	ENSG00000100413	POLR3H	RPC22.9|RPC8	polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)	protein-coding
chr8.52867335.+	chr8	52867335	52867336	+	0	NA	Intergenic	AluSx|SINE|Alu	-55600	NM_052937	115294	Hs.671268	NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chr11.18710293.-	chr11	18710293	18710294	-	0	NA	Intergenic	AluSz|SINE|Alu	10058	NM_153347	144110	Hs.502100	NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
chr18.57061383.+	chr18	57061383	57061384	+	0	NA	Intergenic	AluY|SINE|Alu	-34875	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	"lectin, mannose-binding, 1"	protein-coding
chr5.86116418.+	chr5	86116418	86116419	+	0	NA	Intergenic	AluSp|SINE|Alu	200104	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr14.80915466.+	chr14	80915466	80915467	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-218069	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr12.131419252.+	chr12	131419252	131419253	+	0	NA	Intergenic	AluSz|SINE|Alu	-19200	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr22.43238129.+	chr22	43238129	43238130	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15279	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr19.45217225.+	chr19	45217225	45217226	+	0	NA	Intergenic	AluY|SINE|Alu	14804	NM_001039213	388551	Hs.456381	NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding
chr8.144264940.+	chr8	144264940	144264941	+	0	NA	Intergenic	Intergenic	-22887	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr6.58778980.+	chr6	58778980	58778981	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-491256	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr7.54614250.+	chr7	54614250	54614251	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4231	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr17.79427783.-	chr17	79427783	79427784	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9569	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr15.100080077.-	chr15	100080077	100080078	-	0	NA	Intergenic	AluSq2|SINE|Alu	26056	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr17.7077497.-	chr17	7077497	7077498	-	0	NA	"exon (NM_001197216, exon 6 of 8)"	"exon (NM_001197216, exon 6 of 8)"	-5386	NM_001671	432	Hs.731669	NM_001197216	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
chr7.130418541.+	chr7	130418541	130418542	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	347	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr1.150897047.+	chr1	150897047	150897048	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1768	NM_012432	9869	Hs.643565	NM_001145415	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	"SET domain, bifurcated 1"	protein-coding
chr8.53645928.+	chr8	53645928	53645929	+	0	NA	Intergenic	AluJr|SINE|Alu	-18902	NM_014781	9821	Hs.196102	NM_001083617	ENSG00000023287	RB1CC1	CC1|FIP200	RB1-inducible coiled-coil 1	protein-coding
chr13.113768342.-	chr13	113768342	113768343	-	0	NA	"intron (NR_051961, intron 3 of 6)"	"intron (NR_051961, intron 3 of 6)"	-8240	NM_019616	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII (serum prothrombin conversion accelerator)	protein-coding
chr6.31211956.-	chr6	31211956	31211957	-	0	NA	Intergenic	SVA_F|Other|Other	-27957	NM_001243042	3107	Hs.743218	NM_001243042	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLC-C|PSORS1	"major histocompatibility complex, class I, C"	protein-coding
chr3.128194252.-	chr3	128194252	128194253	-	0	NA	Intergenic	Intergenic	8161	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr8.146052002.-	chr8	146052002	146052003	-	0	NA	promoter-TSS (NM_003416)	promoter-TSS (NM_003416)	901	NM_003416	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
chr7.128142006.-	chr7	128142006	128142007	-	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	-25223	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr4.26862493.-	chr4	26862493	26862494	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-180	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr20.13654653.-	chr20	13654653	13654654	-	0	NA	Intergenic	AluY|SINE|Alu	35070	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr8.123636933.+	chr8	123636933	123636934	+	0	NA	Intergenic	AluSx|SINE|Alu	-156968	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr17.40601037.-	chr17	40601037	40601038	-	0	NA	Intergenic	SVA_D|Other|Other	9825	NM_001130021	535	Hs.463074	NM_001130020	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	"ATPase, H+ transporting, lysosomal V0 subunit a1"	protein-coding
chr3.186441603.+	chr3	186441603	186441604	+	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	6505	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr1.156575145.-	chr1	156575145	156575146	-	0	NA	Intergenic	AluSx|SINE|Alu	3866	NM_015590	54865	Hs.193832	NM_017725	ENSG00000160818	GPATCH4	GPATC4	G patch domain containing 4	protein-coding
chr22.46929366.+	chr22	46929366	46929367	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3701	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr1.115078576.-	chr1	115078576	115078577	-	0	NA	Intergenic	Intergenic	24795	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chr16.22675575.-	chr16	22675575	22675576	-	0	NA	Intergenic	AluJr|SINE|Alu	54028	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr19.55728139.+	chr19	55728139	55728140	+	0	NA	Intergenic	Intergenic	-7265	NM_001161440	5794	Hs.657630	NM_001161440	ENSG00000080031	PTPRH	SAP1	"protein tyrosine phosphatase, receptor type, H"	protein-coding
chr17.37768990.+	chr17	37768990	37768991	+	0	NA	Intergenic	Intergenic	-4815	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr12.66636775.-	chr12	66636775	66636776	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53797	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr12.75694227.-	chr12	75694227	75694228	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29609	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr3.183052327.+	chr3	183052327	183052328	+	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	81295	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr17.50891895.-	chr17	50891895	50891896	-	0	NA	Intergenic	AluY|SINE|Alu	170985	NM_001243552	100506650	Hs.146556	NM_001243552	ENSG00000227011	C17orf112	-	chromosome 17 open reading frame 112	protein-coding
chr6.168397400.-	chr6	168397400	168397401	-	0	NA	Intergenic	Intergenic	19781	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr7.40158257.+	chr7	40158257	40158258	+	0	NA	Intergenic	AluSg|SINE|Alu	15994	NM_138701	136647	Hs.654989	NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20	M-phase specific PLK1 interacting protein	protein-coding
chr16.2762118.+	chr16	2762118	2762119	+	0	NA	TTS (NM_031948)	TTS (NM_031948)	8434	NM_031948	83886	Hs.332878	NM_031948		PRSS27	CAPH2|MPN	"protease, serine 27"	protein-coding
chr16.88772884.+	chr16	88772884	88772885	+	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	-7	NM_001012759	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr6.122006970.-	chr6	122006970	122006971	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-250225	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr9.29188723.-	chr9	29188723	29188724	-	0	NA	"intron (NM_001258282, intron 1 of 6)"	SVA_D|Other|Other	-24275	NM_001258282	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr6.1035027.+	chr6	1035027	1035028	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66540	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chr10.42385210.-	chr10	42385210	42385211	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-478283	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr5.180618850.-	chr5	180618850	180618851	-	0	NA	Intergenic	CpG	-9080	NM_203297	81786	Hs.487412	NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
chr12.132116819.-	chr12	132116819	132116820	-	0	NA	Intergenic	L1ME1|LINE|L1	78813	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr17.11800274.+	chr17	11800274	11800275	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14055	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr9.14830615.+	chr9	14830615	14830616	+	0	NA	"intron (NM_144966, intron 11 of 37)"	"intron (NM_144966, intron 11 of 37)"	-51084	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr12.110715036.+	chr12	110715036	110715037	+	0	NA	Intergenic	AluSg|SINE|Alu	-3996	NM_001681	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	"ATPase, Ca++ transporting, cardiac muscle, slow twitch 2"	protein-coding
chr4.1626817.-	chr4	1626817	1626818	-	0	NA	Intergenic	CpG	-58901	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr5.170687218.-	chr5	170687218	170687219	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49070	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr20.31118131.+	chr20	31118131	31118132	+	0	NA	"intron (NM_001256798, intron 1 of 10)"	AluY|SINE|Alu	-46746	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr16.924569.-	chr16	924569	924570	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69126	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr11.33397600.-	chr11	33397600	33397601	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-118432	NM_005734	10114	Hs.201918	NM_001048200	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
chr3.28951355.+	chr3	28951355	28951356	+	0	NA	Intergenic	AluY|SINE|Alu	334586	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr19.58310319.-	chr19	58310319	58310320	-	0	NA	Intergenic	AluY|SINE|Alu	-15962	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr18.60986953.-	chr18	60986953	60986954	-	0	NA	promoter-TSS (NM_000657)	promoter-TSS (NM_000657)	340	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr1.239683256.-	chr1	239683256	239683257	-	0	NA	Intergenic	AluY|SINE|Alu	109117	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	"cholinergic receptor, muscarinic 3"	protein-coding
chr7.158268137.+	chr7	158268137	158268138	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57368	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr15.23086538.-	chr15	23086538	23086539	-	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	102	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr5.1887186.-	chr5	1887186	1887187	-	0	NA	Intergenic	CpG-20520	4306	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr10.46964155.-	chr10	46964155	46964156	-	0	NA	"intron (NM_181519, intron 6 of 8)"	"intron (NM_181519, intron 6 of 8)"	-6446	NM_031912	83849	Hs.696346	NM_031912	ENSG00000204176	SYT15	CHR10SYT|sytXV	synaptotagmin XV	protein-coding
chr14.105159011.-	chr14	105159011	105159012	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-3068	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr13.114075870.+	chr13	114075870	114075871	+	0	NA	TTS (NM_138430)	TTS (NM_138430)	27587	NM_199162	113622	Hs.98669	NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
chr7.154796054.-	chr7	154796054	154796055	-	0	NA	"non-coding (NR_028090, exon 1 of 1)"	"non-coding (NR_028090, exon 1 of 1)"	-911	NR_028090	202781	Hs.193172	NR_028090		LOC202781	-	uncharacterized LOC202781	miscRNA
chr8.42888208.-	chr8	42888208	42888209	-	0	NA	Intergenic	SVA_D|Other|Other	23234	NR_033698	2339	Hs.370312	NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	"farnesyltransferase, CAAX box, alpha"	protein-coding
chr19.8599195.+	chr19	8599195	8599196	+	0	NA	"intron (NM_012335, intron 19 of 27)"	(TTTTC)n|Simple_repeat|Simple_repeat	-20147	NM_001146175	84330	Hs.515114	NM_001146175	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
chrX.133976896.-	chrX	133976896	133976897	-	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	-35673	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chrM.16397.+	chrM	16397	16398	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr10.76198145.+	chr10	76198145	76198146	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	261898	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr6.168352107.+	chr6	168352107	168352108	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25512	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr5.39649174.-	chr5	39649174	39649175	-	0	NA	Intergenic	AluSx3|SINE|Alu	223839	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr3.186441573.-	chr3	186441573	186441574	-	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	-6475	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr17.78978006.+	chr17	78978006	78978007	+	0	NA	Intergenic	CpG	12365	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr12.50448272.-	chr12	50448272	50448273	-	0	NA	Intergenic	AluSx|SINE|Alu	3148	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr1.37546484.-	chr1	37546484	37546485	-	0	NA	Intergenic	SVA_D|Other|Other	46640	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr21.40032605.-	chr21	40032605	40032606	-	0	NA	promoter-TSS (NM_001243428)	promoter-TSS (NM_001243428)	14	NM_001243428	2078	Hs.473819	NM_001136154	ENSG00000157554	ERG	erg-3|p55	v-ets erythroblastosis virus E26 oncogene homolog (avian)	protein-coding
chr22.50871770.-	chr22	50871770	50871771	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41694	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr14.106359658.-	chr14	106359658	106359659	-	0	NA	Intergenic	Intergenic	24180	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr10.63228796.+	chr10	63228796	63228797	+	0	NA	Intergenic	AluSq2|SINE|Alu	-15588	NM_178505	219623	Hs.623955	NM_178505	ENSG00000196932	TMEM26	-	transmembrane protein 26	protein-coding
chr2.1563001.-	chr2	1563001	1563002	-	0	NA	Intergenic	Intergenic	-144821	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr8.609258.-	chr8	609258	609259	-	0	NA	Intergenic	Intergenic	-71968	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chrX.91037167.+	chrX	91037167	91037168	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2907	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr19.17585870.-	chr19	17585870	17585871	-	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	-4570	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr8.21169237.-	chr8	21169237	21169238	-	0	NA	Intergenic	Intergenic	-337740	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr17.1165713.+	chr17	1165713	1165714	+	0	NA	Intergenic	AluSg|SINE|Alu	-8145	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr4.42658265.-	chr4	42658265	42658266	-	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	-857	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr12.45135212.+	chr12	45135212	45135213	+	0	NA	"intron (NM_001145108, intron 9 of 19)"	L1PA4|LINE|L1	134232	NM_001145109	4753	Hs.505326	NM_001145107	ENSG00000184613	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
chr21.45887619.-	chr21	45887619	45887620	-	0	NA	Intergenic	Intergenic	-12226	NM_030891	81543	Hs.326579	NM_030891	ENSG00000160233	LRRC3	C21orf102	leucine rich repeat containing 3	protein-coding
chr3.29051413.-	chr3	29051413	29051414	-	0	NA	Intergenic	AluSc8|SINE|Alu	271390	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr2.173941041.-	chr2	173941041	173941042	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-476	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr9.133788111.-	chr9	133788111	133788112	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	18886	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr1.181058724.+	chr1	181058724	181058725	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1086	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr14.34924163.+	chr14	34924163	34924164	+	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	7305	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr7.118277721.+	chr7	118277721	118277722	+	0	NA	Intergenic	AluY|SINE|Alu	413009	NM_019644	56311	Hs.729340	NM_001077708	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
chr13.114932186.+	chr13	114932186	114932187	+	0	NA	Intergenic	Intergenic	-34091	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr17.7984200.-	chr17	7984200	7984201	-	0	NA	"intron (NM_001139, intron 4 of 14)"	"intron (NM_001139, intron 4 of 14)"	-6821	NM_001139	242	Hs.136574	NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	"arachidonate 12-lipoxygenase, 12R type"	protein-coding
chr6.33500243.-	chr6	33500243	33500244	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47827	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr13.50177028.-	chr13	50177028	50177029	-	0	NA	Intergenic	AluY|SINE|Alu	17309	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chrX.53165864.+	chrX	53165864	53165865	+	0	NA	Intergenic	AluJo|SINE|Alu	54322	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.37753792.+	chr9	37753792	37753793	+	0	NA	promoter-TSS (NM_144964)	promoter-TSS (NM_144964)	-10	NM_144964	158234	Hs.655614	NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|RP11-3J10.9|bA3J10.9	tRNA methyltransferase 10 homolog B (S. cerevisiae)	protein-coding
chr18.60740391.+	chr18	60740391	60740392	+	0	NA	Intergenic	AluYb8|SINE|Alu	246222	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr1.31586362.-	chr1	31586362	31586363	-	0	NA	Intergenic	AluY|SINE|Alu	47798	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr10.28821891.-	chr10	28821891	28821892	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-469	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr8.70907138.-	chr8	70907138	70907139	-	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	-76424	NM_024504	63978	Hs.736037	NM_024504	ENSG00000147596	PRDM14	PFM11	PR domain containing 14	protein-coding
chr1.153574065.-	chr1	153574065	153574066	-	0	NA	Intergenic	AluY|SINE|Alu	-11449	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr20.5018161.+	chr20	5018161	5018162	+	0	NA	Intergenic	AluSx|SINE|Alu	-27222	NM_203327	9962	Hs.516866	NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	"solute carrier family 23 (nucleobase transporters), member 2"	protein-coding
chr4.134726974.-	chr4	134726974	134726975	-	0	NA	Intergenic	AluY|SINE|Alu	-395929	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	"poly(A) binding protein, cytoplasmic 4-like"	protein-coding
chr18.66366012.-	chr18	66366012	66366013	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16341	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chrX.25544576.-	chrX	25544576	25544577	-	0	NA	Intergenic	AluSc5|SINE|Alu	510511	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
chr19.9311213.+	chr19	9311213	9311214	+	0	NA	Intergenic	AluSc8|SINE|Alu	14334	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr18.68699014.-	chr18	68699014	68699015	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-547178	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr1.2622064.-	chr1	2622064	2622065	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	57583	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr1.247910790.-	chr1	247910790	247910791	-	0	NA	Intergenic	AluY|SINE|Alu	-10918	NM_012353	26188	Hs.381306	NM_012353		OR1C1	HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27	"olfactory receptor, family 1, subfamily C, member 1"	protein-coding
chr8.125234393.-	chr8	125234393	125234394	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150547	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr14.71375178.-	chr14	71375178	71375179	-	0	NA	"intron (NM_014982, intron 1 of 35)"	CpG	-1056	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr2.239047342.+	chr2	239047342	239047343	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-21	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr19.58310336.+	chr19	58310336	58310337	+	0	NA	Intergenic	AluY|SINE|Alu	15945	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr3.112807956.+	chr3	112807956	112807957	+	0	NA	Intergenic	AluYc|SINE|Alu	-69401	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr11.62551851.-	chr11	62551851	62551852	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3023	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chrX.32910710.+	chrX	32910710	32910711	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127607	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr1.224419913.-	chr1	224419913	224419914	-	0	NA	"intron (NM_001243146, intron 19 of 20)"	AluY|SINE|Alu	-24930	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2	microRNA 320b-2	miscRNA
chr19.10543055.+	chr19	10543055	10543056	+	0	NA	promoter-TSS (NM_001111309)	promoter-TSS (NM_001111309)	-56	NM_001111309	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr10.104238441.+	chr10	104238441	104238442	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17271	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr18.11086436.+	chr18	11086436	11086437	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62325	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr6.4780647.+	chr6	4780647	4780648	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3967	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr1.2537342.+	chr1	2537342	2537343	+	0	NA	"intron (NM_033467, intron 8 of 23)"	"intron (NM_033467, intron 8 of 23)"	19153	NM_001195740	127281	Hs.462033	NM_001195736	ENSG00000157870	FAM213B	C1orf93	"family with sequence similarity 213, member B"	protein-coding
chr20.54934410.-	chr20	54934410	54934411	-	0	NA	"intron (NM_080821, intron 1 of 2)"	"intron (NM_080821, intron 1 of 2)"	-427	NM_080821	116151	Hs.593629	NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	"family with sequence similarity 210, member B"	protein-coding
chr22.31744367.-	chr22	31744367	31744368	-	0	NA	Intergenic	AluSp|SINE|Alu	2118	NM_014323	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr10.12405372.+	chr10	12405372	12405373	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13789	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr12.8777857.-	chr12	8777857	8777858	-	0	NA	Intergenic	Intergenic	12415	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr12.110955944.+	chr12	110955944	110955945	+	0	NA	"intron (NM_152442, intron 6 of 11)"	AluY|SINE|Alu	15939	NM_152442	144715	Hs.97794	NM_152442	ENSG00000151164	RAD9B	-	RAD9 homolog B (S. pombe)	protein-coding
chr13.45945040.-	chr13	45945040	45945041	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29560	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr19.4866156.-	chr19	4866156	4866157	-	0	NA	"intron (NM_005817, intron 1 of 7)"	AluSx1|SINE|Alu	-1624	NM_001164194	10226	Hs.140452	NM_001164189	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
chr19.50718692.-	chr19	50718692	50718693	-	0	NA	"intron (NM_001145809, intron 2 of 42)"	"intron (NM_001145809, intron 2 of 42)"	-11807	NM_001145809	79784	Hs.467142	NM_001077186	ENSG00000105357	MYH14	DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	"myosin, heavy chain 14, non-muscle"	protein-coding
chr2.44294795.+	chr2	44294795	44294796	+	0	NA	Intergenic	SVA_D|Other|Other	-71651	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr16.3755323.+	chr16	3755323	3755324	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12275	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr1.171662932.-	chr1	171662932	171662933	-	0	NA	Intergenic	SVA_C|Other|Other	41159	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr9.16915828.-	chr9	16915828	16915829	-	0	NA	Intergenic	Intergenic	45042	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr3.129670177.+	chr3	129670177	129670178	+	0	NA	Intergenic	Intergenic	-22937	NM_007117	7200	Hs.732877	NM_007117	ENSG00000170893	TRH	-	thyrotropin-releasing hormone	protein-coding
chr8.100115797.+	chr8	100115797	100115798	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90303	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chrX.54867450.+	chrX	54867450	54867451	+	0	NA	Intergenic	Intergenic	26647	NR_002953	677799	Hs.679783	NR_002953		SNORA11	SNORA11A|U107	"small nucleolar RNA, H/ACA box 11"	snoRNA
chr7.2050666.-	chr7	2050666	2050667	-	0	NA	"intron (NM_001013836, intron 13 of 18)"	"intron (NM_001013836, intron 13 of 18)"	166777	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr15.20557612.+	chr15	20557612	20557613	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	69615	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr2.128432630.-	chr2	128432630	128432631	-	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	-134	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr4.188471162.-	chr4	188471162	188471163	-	0	NA	Intergenic	AluSg|SINE|Alu	44395	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr3.114903136.+	chr3	114903136	114903137	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37009	NM_015642	26137	Hs.655108	NM_001164342	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
chr4.989203.-	chr4	989203	989204	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1979	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr2.172017515.-	chr2	172017515	172017516	-	0	NA	promoter-TSS (NM_012290)	promoter-TSS (NM_012290)	105	NM_012290	9874	Hs.596942	NM_001136554	ENSG00000198586	TLK1	PKU-beta	tousled-like kinase 1	protein-coding
chr21.47344899.+	chr21	47344899	47344900	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-56764	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr15.57662574.-	chr15	57662574	57662575	-	0	NA	Intergenic	AluSx|SINE|Alu	6129	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr10.35336421.-	chr10	35336421	35336422	-	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	-26837	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr5.136467582.-	chr5	136467582	136467583	-	0	NA	"intron (NM_004598, intron 4 of 10)"	AluY|SINE|Alu	-367436	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1"	protein-coding
chr11.67183087.+	chr11	67183087	67183088	+	0	NA	promoter-TSS (NM_001166222)	promoter-TSS (NM_001166222)	-62	NM_020811	57571	Hs.502982	NM_001166222	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
chr7.939353.-	chr7	939353	939354	-	0	NA	"intron (NM_006869, intron 8 of 10)"	"intron (NM_006869, intron 8 of 10)"	-23162	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr1.226350692.-	chr1	226350692	226350693	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23731	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr6.142795211.-	chr6	142795211	142795212	-	0	NA	Intergenic	AluSc|SINE|Alu	-163762	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr12.8830989.+	chr12	8830989	8830990	+	0	NA	Intergenic	AluSp|SINE|Alu	-15556	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr19.18416231.-	chr19	18416231	18416232	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17770	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr3.133393538.+	chr3	133393538	133393539	+	0	NA	Intergenic	CpG	-12801	NM_007027	11073	Hs.593379	NM_007027	ENSG00000163781	TOPBP1	TOP2BP1	topoisomerase (DNA) II binding protein 1	protein-coding
chr1.181058715.-	chr1	181058715	181058716	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1077	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr22.38315137.+	chr22	38315137	38315138	+	0	NA	"exon (NM_033386, exon 5 of 16)"	"exon (NM_033386, exon 5 of 16)"	12982	NM_033386	85377	Hs.517610	NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL-like 1	protein-coding
chr20.32056505.-	chr20	32056505	32056506	-	0	NA	Intergenic	AluSx1|SINE|Alu	21423	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr1.27821210.-	chr1	27821210	27821211	-	0	NA	Intergenic	AluY|SINE|Alu	4532	NM_001201404	10163	Hs.469244	NM_001201404	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	"WAS protein family, member 2"	protein-coding
chr2.48010443.+	chr2	48010443	48010444	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	222	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr11.118672092.+	chr11	118672092	118672093	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10120	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr18.11959827.+	chr18	11959827	11959828	+	0	NA	Intergenic	SVA_D|Other|Other	-21600	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr14.23844983.+	chr14	23844983	23844984	+	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	-1034	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr5.28928053.+	chr5	28928053	28928054	+	0	NA	TTS (NR_033961)	TTS (NR_033961)	1076	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr11.2929623.-	chr11	2929623	2929624	-	0	NA	"intron (NM_002555, intron 3 of 10)"	"intron (NM_002555, intron 3 of 10)"	4448	NM_007105	5003	Hs.300076	NM_007105		SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	"solute carrier family 22 (organic cation transporter), member 18 antisense"	protein-coding
chr1.32122117.-	chr1	32122117	32122118	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11279	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr9.15428405.+	chr9	15428405	15428406	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5623	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr1.240947682.+	chr1	240947682	240947683	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172220	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr22.46565261.-	chr22	46565261	46565262	-	0	NA	"intron (NM_001001928, intron 2 of 7)"	AluY|SINE|Alu	-18762	NM_001001928	5465	Hs.710044	NM_001001928	ENSG00000186951	PPARA	NR1C1|PPAR|PPARalpha|hPPAR	peroxisome proliferator-activated receptor alpha	protein-coding
chr5.31921536.+	chr5	31921536	31921537	+	0	NA	"intron (NM_178140, intron 1 of 23)"	AluJb|SINE|Alu	14729	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	miscRNA
chr4.82537825.-	chr4	82537825	82537826	-	0	NA	Intergenic	AluSx|SINE|Alu	144764	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	"RasGEF domain family, member 1B"	protein-coding
chr5.134073709.-	chr5	134073709	134073710	-	0	NA	promoter-TSS (NM_001745)	promoter-TSS (NM_001745)	461	NM_001745	819	Hs.529846	NM_001745	ENSG00000164615	CAMLG	CAML	calcium modulating ligand	protein-coding
chrM.12819.-	chrM	12819	12820	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.196034434.-	chr1	196034434	196034435	-	0	NA	Intergenic	AluY|SINE|Alu	-517177	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr8.43274644.+	chr8	43274644	43274645	+	0	NA	Intergenic	SVA_D|Other|Other	127059	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr3.183450127.+	chr3	183450127	183450128	+	0	NA	"intron (NM_018023, intron 7 of 30)"	AluSx3|SINE|Alu	34521	NM_018023	55689	Hs.632575	NM_018023	ENSG00000163872	YEATS2	-	YEATS domain containing 2	protein-coding
chr20.56167460.+	chr20	56167460	56167461	+	0	NA	Intergenic	Intergenic	28172	NM_001160419	81030	Hs.302123	NM_001160417	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
chr1.110881072.+	chr1	110881072	110881073	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	721	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr9.77401560.-	chr9	77401560	77401561	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100703	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr17.18178974.-	chr17	18178974	18178975	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14550	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr6.42751361.-	chr6	42751361	42751362	-	0	NA	Intergenic	CpG	37433	NM_015349	23506	Hs.658033	NM_015349	ENSG00000112624	GLTSCR1L	KIAA0240	GLTSCR1-like	protein-coding
chr1.113336813.+	chr1	113336813	113336814	+	0	NA	Intergenic	MER70B|LTR|ERVL	73624	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chrM.6538.+	chrM	6538	6539	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.132353186.+	chr12	132353186	132353187	+	0	NA	Intergenic	Intergenic	-26093	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chrX.42145008.-	chrX	42145008	42145009	-	0	NA	Intergenic	SVA_D|Other|Other	362721	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr7.75420392.-	chr7	75420392	75420393	-	0	NA	Intergenic	AluSq2|SINE|Alu	1328	NM_006072	10344	Hs.131342	NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	chemokine (C-C motif) ligand 26	protein-coding
chr2.100856163.+	chr2	100856163	100856164	+	0	NA	Intergenic	Intergenic	83032	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
chr17.15122349.-	chr17	15122349	15122350	-	0	NA	Intergenic	AluY|SINE|Alu	-32664	NR_039884	100616125		NR_039884		MIR4731	-	microRNA 4731	miscRNA
chr14.102954955.-	chr14	102954955	102954956	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21173	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr9.861788.-	chr9	861788	861789	-	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	-20098	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr7.591465.-	chr7	591465	591466	-	0	NA	"intron (NM_002735, intron 9 of 10)"	C-rich|Low_complexity|Low_complexity	-31437	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr2.101924978.-	chr2	101924978	101924979	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-200	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr7.1798911.-	chr7	1798911	1798912	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50113	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr1.235490678.+	chr1	235490678	235490679	+	0	NA	"5' UTR (NM_001206794, exon 1 of 24)"	"5' UTR (NM_001206794, exon 1 of 24)"	124	NM_001206794	51742	Hs.575782	NM_001206794	ENSG00000054267	ARID4B	BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding
chr14.104097544.-	chr14	104097544	104097545	-	0	NA	"intron (NM_182923, intron 1 of 14)"	AluY|SINE|Alu	-2019	NM_005552	3831	Hs.657678	NM_001130107	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
chr16.634289.+	chr16	634289	634290	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-5068	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr3.128416735.+	chr3	128416735	128416736	+	0	NA	Intergenic	AluSc|SINE|Alu	-28244	NM_004637	7879	Hs.15738	NM_004637	ENSG00000075785	RAB7A	PRO2706|RAB7	"RAB7A, member RAS oncogene family"	protein-coding
chr17.5166738.+	chr17	5166738	5166739	+	0	NA	Intergenic	AluY|SINE|Alu	-18820	NM_001083585	9135	Hs.733301	NM_001083585	ENSG00000029725	RABEP1	RAB5EP|RABPT5	"rabaptin, RAB GTPase binding effector protein 1"	protein-coding
chr3.13876351.-	chr3	13876351	13876352	-	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	-45267	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr3.68753614.+	chr3	68753614	68753615	+	0	NA	Intergenic	AluSx3|SINE|Alu	228147	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr17.34053768.+	chr17	34053768	34053769	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4911	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr15.61486524.+	chr15	61486524	61486525	+	0	NA	"intron (NM_134261, intron 1 of 10)"	AluSx3|SINE|Alu	34978	NM_134261	6095	Hs.655155	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR-related orphan receptor A	protein-coding
chr11.76520765.-	chr11	76520765	76520766	-	0	NA	Intergenic	AluY|SINE|Alu	-26480	NM_015516	25987	Hs.8361	NM_001258210	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	"tsukushi, small leucine rich proteoglycan"	protein-coding
chr4.1358116.+	chr4	1358116	1358117	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	17012	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr19.2491352.-	chr19	2491352	2491353	-	0	NA	Intergenic	Intergenic	-15229	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chrX.24206027.+	chrX	24206027	24206028	+	0	NA	"intron (NM_001178084, intron 3 of 7)"	AluSg|SINE|Alu	38173	NM_003410	7543	Hs.336681	NM_001178084	ENSG00000005889	ZFX	ZNF926	"zinc finger protein, X-linked"	protein-coding
chr2.20424973.-	chr2	20424973	20424974	-	0	NA	promoter-TSS (NM_002997)	promoter-TSS (NM_002997)	46	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr14.103988604.-	chr14	103988604	103988605	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-592	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr6.126111985.-	chr6	126111985	126111986	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-76	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr9.34116731.+	chr9	34116731	34116732	+	0	NA	"intron (NM_015397, intron 2 of 8)"	AluSx1|SINE|Alu	10040	NM_015397	25853	Hs.741270	NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
chr15.75840690.-	chr15	75840690	75840691	-	0	NA	"intron (NM_002833, intron 1 of 12)"	AluSq2|SINE|Alu	-30935	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	"protein tyrosine phosphatase, non-receptor type 9"	protein-coding
chr7.150705954.+	chr7	150705954	150705955	+	0	NA	"intron (NM_000603, intron 17 of 26)"	CpG	15062	NM_001160110	4846	Hs.647092	NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3 (endothelial cell)	protein-coding
chr16.75032889.-	chr16	75032889	75032890	-	0	NA	promoter-TSS (NM_032268)	promoter-TSS (NM_032268)	26	NM_032268	84937	Hs.427284	NM_032268	ENSG00000186187	ZNRF1	NIN283	"zinc and ring finger 1, E3 ubiquitin protein ligase"	protein-coding
chr12.106533434.-	chr12	106533434	106533435	-	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	-377	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr6.158244289.+	chr6	158244289	158244290	+	0	NA	promoter-TSS (NM_016224)	promoter-TSS (NM_016224)	-5	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	MST155|MSTP155|SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
chr15.29130793.-	chr15	29130793	29130794	-	0	NA	Intergenic	CpG	36972	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr18.70912386.-	chr18	70912386	70912387	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19347	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr6.12012480.+	chr6	12012480	12012481	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-244	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr6.133157593.+	chr6	133157593	133157594	+	0	NA	Intergenic	AluSx|SINE|Alu	19235	NR_002436	594839	Hs.671378	NR_002436		SNORA33	ACA33	"small nucleolar RNA, H/ACA box 33"	snoRNA
chr10.22624568.-	chr10	22624568	22624569	-	0	NA	Intergenic	CpG	9806	NM_001253855	9576	Hs.655170	NM_001253854	ENSG00000077327	SPAG6	Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
chr2.101245784.+	chr2	101245784	101245785	+	0	NA	Intergenic	Intergenic	66366	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.32568543.-	chr2	32568543	32568544	-	0	NA	Intergenic	AluSc8|SINE|Alu	13553	NM_016252	57448	Hs.150107	NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
chr2.55647053.-	chr2	55647053	55647054	-	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	-4	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr17.744653.+	chr17	744653	744654	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22698	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr1.235267774.+	chr1	235267774	235267775	+	0	NA	Intergenic	CpG	23478	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	"small nucleolar RNA, H/ACA box 14B"	snoRNA
chr11.77381972.-	chr11	77381972	77381973	-	0	NA	"intron (NM_016578, intron 15 of 15)"	AluSx|SINE|Alu	33121	NM_001293	1207	Hs.430733	NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	"chloride channel, nucleotide-sensitive, 1A"	protein-coding
chr15.75748043.+	chr15	75748043	75748044	+	0	NA	promoter-TSS (NM_001145357)	promoter-TSS (NM_001145357)	81	NM_001145357	25942	Hs.513039	NM_001145357	ENSG00000169375	SIN3A	-	SIN3 transcription regulator homolog A (yeast)	protein-coding
chr16.584218.-	chr16	584218	584219	-	0	NA	"intron (NM_005632, intron 2 of 13)"	"intron (NM_005632, intron 2 of 13)"	1098	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	miscRNA
chr3.196619068.-	chr3	196619068	196619069	-	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	-24341	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr15.90792636.+	chr15	90792636	90792637	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-128	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chrX.135849454.-	chrX	135849454	135849455	-	0	NA	"intron (NM_004840, intron 2 of 21)"	CpG	-14049	NM_004840	9459	Hs.522795	NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding
chr7.91257063.+	chr7	91257063	91257064	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252953	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr4.166248536.-	chr4	166248536	166248537	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	282	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr13.100409967.+	chr13	100409967	100409968	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluSq|SINE|Alu	114654	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr10.133869105.+	chr10	133869105	133869106	+	0	NA	Intergenic	Intergenic	-49208	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr22.38008302.+	chr22	38008302	38008303	+	0	NA	"intron (NM_001172688, intron 1 of 17)"	AluY|SINE|Alu	3255	NM_001172688	26088	Hs.499158	NM_001001560	ENSG00000100083	GGA1	-	"golgi-associated, gamma adaptin ear containing, ARF binding protein 1"	protein-coding
chr11.77200920.-	chr11	77200920	77200921	-	0	NA	Intergenic	SVA_D|Other|Other	15812	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr17.4105654.+	chr17	4105654	4105655	+	0	NA	"intron (NR_047571, intron 6 of 23)"	AluSz6|SINE|Alu	58739	NM_001254755	124936	Hs.513871	NM_001254755	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
chr2.4156296.-	chr2	4156296	4156297	-	0	NA	Intergenic	CpG	134674	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr20.42236435.+	chr20	42236435	42236436	+	0	NA	"intron (NM_016004, intron 6 of 13)"	SVA_D|Other|Other	16856	NM_016004	51098	Hs.444332	NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1	intraflagellar transport 52 homolog (Chlamydomonas)	protein-coding
chr6.151727627.-	chr6	151727627	151727628	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14950	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr3.142607832.-	chr3	142607832	142607833	-	0	NA	"5' UTR (NM_013363, exon 1 of 9)"	"5' UTR (NM_013363, exon 1 of 9)"	-213	NM_013363	26577	Hs.8944	NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
chr21.11107105.-	chr21	11107105	11107106	-	0	NA	Intergenic	CpG	8168	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr5.133968952.+	chr5	133968952	133968953	+	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	-419	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr5.38846417.+	chr5	38846417	38846418	+	0	NA	"5' UTR (NM_003999, exon 1 of 18)"	"5' UTR (NM_003999, exon 1 of 18)"	316	NM_003999	9180	Hs.658389	NM_001168355	ENSG00000145623	OSMR	OSMRB|PLCA1	oncostatin M receptor	protein-coding
chr12.116724215.+	chr12	116724215	116724216	+	0	NA	Intergenic	AluY|SINE|Alu	-9224	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr13.50159673.-	chr13	50159673	50159674	-	0	NA	promoter-TSS (NM_018191)	promoter-TSS (NM_018191)	-46	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr7.8008964.+	chr7	8008964	8008965	+	0	NA	"5' UTR (NM_138426, exon 1 of 8)"	"5' UTR (NM_138426, exon 1 of 8)"	590	NM_138426	113263	Hs.131673	NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced transcript 1	protein-coding
chr2.202092547.-	chr2	202092547	202092548	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5619	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chrX.38555450.+	chrX	38555450	38555451	+	0	NA	Intergenic	AluSg4|SINE|Alu	-105235	NM_001098791	58526	Hs.522605	NM_001098790	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
chr21.32687758.-	chr21	32687758	32687759	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243532	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chrX.136083590.-	chrX	136083590	136083591	-	0	NA	Intergenic	SVA_D|Other|Other	-30243	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
chr12.133115273.+	chr12	133115273	133115274	+	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	48116	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr6.150275483.+	chr6	150275483	150275484	+	0	NA	Intergenic	CpG	-9660	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr15.83365910.+	chr15	83365910	83365911	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12725	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr13.72336644.+	chr13	72336644	72336645	+	0	NA	"intron (NM_080759, intron 1 of 10)"	AluSp|SINE|Alu	104686	NM_080759	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr1.21380287.-	chr1	21380287	21380288	-	0	NA	"intron (NM_003760, intron 1 of 31)"	SVA_D|Other|Other	-57589	NM_003760	8672	Hs.732241	NM_001198801	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	"eukaryotic translation initiation factor 4 gamma, 3"	protein-coding
chr12.84357941.-	chr12	84357941	84357942	-	0	NA	Intergenic	AluY|SINE|Alu	-948667	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr13.103088605.-	chr13	103088605	103088606	-	0	NA	Intergenic	AluY|SINE|Alu	34481	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr17.72916042.-	chr17	72916042	72916043	-	0	NA	"exon (NM_173477, exon 2 of 3)"	"exon (NM_173477, exon 2 of 3)"	-3309	NM_173477	124590	Hs.376688	NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	Usher syndrome 1G (autosomal recessive)	protein-coding
chr7.5396372.+	chr7	5396372	5396373	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66805	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr6.46742369.+	chr6	46742369	46742370	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18725	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr10.30848025.+	chr10	30848025	30848026	+	0	NA	Intergenic	AluSp|SINE|Alu	70622	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
chr18.19172536.+	chr18	19172536	19172537	+	0	NA	"intron (NM_052911, intron 1 of 11)"	SVA_D|Other|Other	8157	NM_052911	114799	Hs.464733	NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of cohesion 1 homolog 1 (S. cerevisiae)	protein-coding
chr8.120565228.+	chr8	120565228	120565229	+	0	NA	Intergenic	AluSc8|SINE|Alu	40020	NR_045555	5168	Hs.190977	NM_001040092	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
chr10.7626542.-	chr10	7626542	7626543	-	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	-35094	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr2.155617333.+	chr2	155617333	155617334	+	0	NA	"intron (NM_002239, intron 2 of 2)"	AluY|SINE|Alu	62240	NM_001260509	3760	Hs.591606	NM_001260508	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	"potassium inwardly-rectifying channel, subfamily J, member 3"	protein-coding
chr5.170687166.-	chr5	170687166	170687167	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49122	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr12.129892174.+	chr12	129892174	129892175	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496038	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr19.15037589.-	chr19	15037589	15037590	-	0	NA	Intergenic	AluSp|SINE|Alu	14712	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr1.247465252.+	chr1	247465252	247465253	+	0	NA	"intron (NM_032752, intron 8 of 8)"	"intron (NM_032752, intron 8 of 8)"	29793	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr16.31103182.-	chr16	31103182	31103183	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	3052	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr11.86869666.-	chr11	86869666	86869667	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-120780	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr20.50589989.-	chr20	50589989	50589990	-	0	NA	Intergenic	AluSc|SINE|Alu	170941	NM_020436	57167	Hs.517113	NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|ZNF797|dJ1112F19.1	sal-like 4 (Drosophila)	protein-coding
chr4.114652864.-	chr4	114652864	114652865	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30219	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr12.51681491.-	chr12	51681491	51681492	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17289	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr7.104040068.-	chr7	104040068	104040069	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-70964	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr8.43413742.-	chr8	43413742	43413743	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266157	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr1.10040874.-	chr1	10040874	10040875	-	0	NA	"intron (NM_022787, intron 3 of 4)"	AluSc8|SINE|Alu	16381	NM_052960	116362	Hs.422688	NM_052960	ENSG00000162444	RBP7	CRBP4|CRBPIV	"retinol binding protein 7, cellular"	protein-coding
chr18.29434814.+	chr18	29434814	29434815	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88277	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr6.4780646.+	chr6	4780646	4780647	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3966	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr10.104255215.-	chr10	104255215	104255216	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7297	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr4.186887718.-	chr4	186887718	186887719	-	0	NA	Intergenic	AluSx1|SINE|Alu	9848	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr2.15359962.-	chr2	15359962	15359963	-	0	NA	"intron (NM_015909, intron 47 of 51)"	SVA_E|Other|Other	-341510	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
chr11.17160918.-	chr11	17160918	17160919	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30436	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr4.989218.+	chr4	989218	989219	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-1994	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr11.31560836.-	chr11	31560836	31560837	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29539	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr16.1824212.-	chr16	1824212	1824213	-	0	NA	"intron (NM_001257370, intron 2 of 7)"	"intron (NM_001257370, intron 2 of 7)"	-983	NM_001257370	197342	Hs.7247	NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic endonuclease 1 homolog 2 (S. pombe)	protein-coding
chrX.11749434.-	chrX	11749434	11749435	-	0	NA	Intergenic	AluSx|SINE|Alu	26844	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr14.23517044.-	chr14	23517044	23517045	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5668	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr8.41166075.+	chr8	41166075	41166076	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	915	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr17.65335417.-	chr17	65335417	65335418	-	0	NA	Intergenic	AluSx|SINE|Alu	-27304	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr21.47838720.-	chr21	47838720	47838721	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40142	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr4.69790963.-	chr4	69790963	69790964	-	0	NA	Intergenic	AluY|SINE|Alu	-26546	NR_024010	79799	Hs.122583	NM_024743	ENSG00000135220	UGT2A3	-	"UDP glucuronosyltransferase 2 family, polypeptide A3"	protein-coding
chr7.53196228.-	chr7	53196228	53196229	-	0	NA	Intergenic	AluY|SINE|Alu	-92879	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr12.94364474.-	chr12	94364474	94364475	-	0	NA	Intergenic	AluY|SINE|Alu	178025	NM_005761	10154	Hs.584845	NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
chr8.23097395.+	chr8	23097395	23097396	+	0	NA	Intergenic	AluY|SINE|Alu	-3755	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr7.91764150.+	chr7	91764150	91764151	+	0	NA	promoter-TSS (NM_000786)	promoter-TSS (NM_000786)	-91	NM_001146152	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	"cytochrome P450, family 51, subfamily A, polypeptide 1"	protein-coding
chr1.9883949.+	chr1	9883949	9883950	+	0	NA	"5' UTR (NM_001009566, exon 1 of 19)"	"5' UTR (NM_001009566, exon 1 of 19)"	601	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr10.88411553.-	chr10	88411553	88411554	-	0	NA	Intergenic	Intergenic	2761	NM_001030015	94233	Hs.283922	NM_001030015	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
chr4.96097980.+	chr4	96097980	96097981	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85338	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr22.43238130.+	chr22	43238130	43238131	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15278	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr8.128328721.-	chr8	128328721	128328722	-	0	NA	Intergenic	Intergenic	99136	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr2.126013198.+	chr2	126013198	126013199	+	0	NA	Intergenic	AluSc8|SINE|Alu	1230334	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr20.37093382.-	chr20	37093382	37093383	-	0	NA	Intergenic	AluSx3|SINE|Alu	8104	NM_020336	57148	Hs.598850	NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta|dJ1100H13.1	"Ral GTPase activating protein, beta subunit (non-catalytic)"	protein-coding
chr6.41888735.-	chr6	41888735	41888736	-	0	NA	promoter-TSS (NM_004053)	promoter-TSS (NM_004053)	-142	NM_004275	9477	Hs.278434	NM_004275	ENSG00000124641	MED20	PRO0213|TRFP	mediator complex subunit 20	protein-coding
chr16.4596277.-	chr16	4596277	4596278	-	0	NA	Intergenic	AluY|SINE|Alu	7461	NM_001199056	29965	Hs.654653	NM_001199054	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death-inducing p53 target 1	protein-coding
chr11.72160491.-	chr11	72160491	72160492	-	0	NA	Intergenic	AluY|SINE|Alu	14767	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr16.85371274.-	chr16	85371274	85371275	-	0	NA	Intergenic	MER115|DNA|hAT-Tip100	31343	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr9.138959140.+	chr9	138959140	138959141	+	0	NA	"intron (NM_144653, intron 1 of 5)"	L1MB8|LINE|L1	27991	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr21.31598692.+	chr21	31598692	31598693	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10223	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr8.144546581.+	chr8	144546581	144546582	+	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	-33979	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr18.70912358.+	chr18	70912358	70912359	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19375	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr2.136064059.+	chr2	136064059	136064060	+	0	NA	"intron (NM_032143, intron 8 of 20)"	AluY|SINE|Alu	224747	NM_032143	84083	Hs.658422	NM_032143	ENSG00000121988	ZRANB3	4933425L19Rik|AH2	"zinc finger, RAN-binding domain containing 3"	protein-coding
chr3.77689546.-	chr3	77689546	77689547	-	0	NA	"intron (NM_002942, intron 24 of 25)"	AluY|SINE|Alu	-542383	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr22.51001352.+	chr22	51001352	51001353	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-24	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr2.136760864.+	chr2	136760864	136760865	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17642	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr5.27408047.+	chr5	27408047	27408048	+	0	NA	Intergenic	AluY|SINE|Alu	-64352	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr3.126207226.-	chr3	126207226	126207227	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12464	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr13.20343664.-	chr13	20343664	20343665	-	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	-13495	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr16.88729519.-	chr16	88729519	88729520	-	0	NA	promoter-TSS (NM_002461)	promoter-TSS (NM_002461)	24	NM_002461	4597	Hs.252457	NM_002461	ENSG00000167508	MVD	FP17780|MPD	mevalonate (diphospho) decarboxylase	protein-coding
chr15.64369379.+	chr15	64369379	64369380	+	0	NA	"intron (NM_001014812, intron 2 of 3)"	AluSc8|SINE|Alu	16828	NM_032231	84191	Hs.439548	NM_001014812	ENSG00000166797	FAM96A	-	"family with sequence similarity 96, member A"	protein-coding
chrX.32812525.-	chrX	32812525	32812526	-	0	NA	"intron (NM_000109, intron 7 of 78)"	AluY|SINE|Alu	-225792	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chrX.39953493.-	chrX	39953493	39953494	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	CpG	-3226	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr13.31735101.-	chr13	31735101	31735102	-	0	NA	"intron (NM_006644, intron 1 of 17)"	"intron (NM_006644, intron 1 of 17)"	-1016	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr2.90482937.+	chr2	90482937	90482938	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365038	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr16.1228075.+	chr16	1228075	1228076	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24834	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr19.47628015.-	chr19	47628015	47628016	-	0	NA	Intergenic	AluY|SINE|Alu	6065	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr7.155246416.-	chr7	155246416	155246417	-	0	NA	Intergenic	CpG	4408	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr2.85638936.+	chr2	85638936	85638937	+	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	-1116	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr17.2603696.+	chr17	2603696	2603697	+	0	NA	"exon (NM_015229, exon 9 of 26)"	"exon (NM_015229, exon 9 of 26)"	11231	NM_015229	23277	Hs.22616	NM_015229	ENSG00000132361	CLUH	CLU1|KIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding
chr13.114446700.+	chr13	114446700	114446701	+	0	NA	Intergenic	Intergenic	7362	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr6.165953208.+	chr6	165953208	165953209	+	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	122380	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr15.75116005.-	chr15	75116005	75116006	-	0	NA	"exon (NM_021819, exon 12 of 14)"	"exon (NM_021819, exon 12 of 14)"	2946	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII	complexin 3	protein-coding
chr2.170666416.-	chr2	170666416	170666417	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11094	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr9.139071878.-	chr9	139071878	139071879	-	0	NA	Intergenic	Intergenic	-23126	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr1.10727891.-	chr1	10727891	10727892	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128842	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr14.77227728.-	chr14	77227728	77227729	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	507	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chrX.39953494.+	chrX	39953494	39953495	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	CpG	3225	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr9.135947008.-	chr9	135947008	135947009	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9643	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr10.120946135.-	chr10	120946135	120946136	-	0	NA	Intergenic	AluY|SINE|Alu	7790	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr4.3076332.-	chr4	3076332	3076333	-	0	NA	promoter-TSS (NM_002111)	promoter-TSS (NM_002111)	76	NM_002111	3064	Hs.518450	NM_002111	ENSG00000197386	HTT	HD|IT15	huntingtin	protein-coding
chr15.41613142.-	chr15	41613142	41613143	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11677	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr10.134411431.-	chr10	134411431	134411432	-	0	NA	"intron (NM_005539, intron 1 of 15)"	CpG	-60078	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr4.190662155.+	chr4	190662155	190662156	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199819	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr5.1824191.-	chr5	1824191	1824192	-	0	NA	Intergenic	AluSz6|SINE|Alu	-22695	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr7.73650258.-	chr7	73650258	73650259	-	0	NA	"intron (NM_181471, intron 9 of 10)"	FLAM_C|SINE|Alu	-18480	NM_181471	5982	Hs.647062	NM_002914	ENSG00000049541	RFC2	A1|RFC40	"replication factor C (activator 1) 2, 40kDa"	protein-coding
chr2.47660750.+	chr2	47660750	47660751	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30544	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr17.45331320.+	chr17	45331320	45331321	+	0	NA	"intron (NM_000212, intron 1 of 14)"	CpG	112	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr6.43070143.-	chr6	43070143	43070144	-	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	-25591	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr2.43707924.+	chr2	43707924	43707925	+	0	NA	"intron (NM_022065, intron 26 of 37)"	AluSx3|SINE|Alu	115189	NM_001083953	63892	Hs.369592	NM_001083953	ENSG00000115970	THADA	GITA	thyroid adenoma associated	protein-coding
chrX.1379075.+	chrX	1379075	1379076	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8618	NM_172249	1438	Hs.520937	NM_001161529	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	"colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)"	protein-coding
chr10.8150594.+	chr10	8150594	8150595	+	0	NA	Intergenic	AluY|SINE|Alu	53927	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr12.34492691.+	chr12	34492691	34492692	+	0	NA	Intergenic	GSATII|Satellite|centr	317475	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr21.45566075.-	chr21	45566075	45566076	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12581	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr12.51386368.-	chr12	51386368	51386369	-	0	NA	"intron (NM_000617, intron 12 of 15)"	AluSz|SINE|Alu	-16685	NM_001174130	4891	Hs.505545	NM_000617	ENSG00000110911	SLC11A2	DCT1|DMT1|NRAMP2	"solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2"	protein-coding
chr7.532151.-	chr7	532151	532152	-	0	NA	Intergenic	Intergenic	-27330	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr16.730722.-	chr16	730722	730723	-	0	NA	TTS (NM_001005920)	TTS (NM_001005920)	-607	NM_005861	10273	Hs.592081	NM_005861	ENSG00000103266	STUB1	CHIP|HSPABP2|NY-CO-7|SDCCAG7|UBOX1	"STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase"	protein-coding
chr1.194964701.+	chr1	194964701	194964702	+	0	NA	Intergenic	AluYa5|SINE|Alu	1586910	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chrX.147774573.+	chrX	147774573	147774574	+	0	NA	"intron (NM_002025, intron 3 of 20)"	AluY|SINE|Alu	-26042	NM_001170628	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr16.89114594.-	chr16	89114594	89114595	-	0	NA	Intergenic	CpG	45623	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr19.23474387.+	chr19	23474387	23474388	+	0	NA	Intergenic	AluSx|SINE|Alu	-41215	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr10.74109925.-	chr10	74109925	74109926	-	0	NA	"intron (NM_001002762, intron 1 of 7)"	AluJo|SINE|Alu	-4982	NM_001002762	54788	Hs.500013	NM_001002762	ENSG00000148719	DNAJB12	DJ10	"DnaJ (Hsp40) homolog, subfamily B, member 12"	protein-coding
chr1.65532986.-	chr1	65532986	65532987	-	0	NA	Intergenic	CpG	8795	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr6.126111929.-	chr6	126111929	126111930	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-20	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr11.62438134.-	chr11	62438134	62438135	-	0	NA	promoter-TSS (NM_001085372)	promoter-TSS (NM_001085372)	992	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chr8.27678909.-	chr8	27678909	27678910	-	0	NA	"intron (NM_018492, intron 5 of 7)"	AluSg|SINE|Alu	-16440	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr1.60870846.-	chr1	60870846	60870847	-	0	NA	Intergenic	AluYa5|SINE|Alu	331404	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chr10.135031511.-	chr10	135031511	135031512	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12267	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr12.53535427.-	chr12	53535427	53535428	-	0	NA	Intergenic	AluY|SINE|Alu	-22850	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr16.50142547.+	chr16	50142547	50142548	+	0	NA	Intergenic	AluSz6|SINE|Alu	42666	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chrX.100277473.-	chrX	100277473	100277474	-	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	-29632	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr1.40259989.-	chr1	40259989	40259990	-	0	NA	Intergenic	AluY|SINE|Alu	5456	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr17.74820381.-	chr17	74820381	74820382	-	0	NA	Intergenic	Intergenic	44417	NM_001199172	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr9.38829886.-	chr9	38829886	38829887	-	0	NA	Intergenic	AluY|SINE|Alu	-208801	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr12.112426255.-	chr12	112426255	112426256	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24768	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr9.34329544.-	chr9	34329544	34329545	-	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-40	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr7.21370308.+	chr7	21370308	21370309	+	0	NA	Intergenic	MER52D|LTR|ERV1	-97381	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr16.69969109.-	chr16	69969109	69969110	-	0	NA	"intron (NM_199424, intron 7 of 13)"	"intron (NM_199424, intron 7 of 13)"	-2125	NR_029681	406932		NR_029681		MIR140	MIRN140|miRNA140	microRNA 140	miscRNA
chr17.47364095.-	chr17	47364095	47364096	-	0	NA	Intergenic	AluSx|SINE|Alu	-38490	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chrX.52963957.-	chrX	52963957	52963958	-	0	NA	Intergenic	Intergenic	-21672	NM_001099684	727866	Hs.6451	NM_001099684	ENSG00000179304	FAM156B	TMEM29B	"family with sequence similarity 156, member B"	protein-coding
chr10.14719534.+	chr10	14719534	14719535	+	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	97362	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr6.24720981.-	chr6	24720981	24720982	-	0	NA	Intergenic	CpG	1578	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr16.67519983.+	chr16	67519983	67519984	+	0	NA	Intergenic	AluY|SINE|Alu	-2267	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr22.44845323.+	chr22	44845323	44845324	+	0	NA	Intergenic	Intergenic	48682	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr1.227982960.+	chr1	227982960	227982961	+	0	NA	Intergenic	Intergenic	-20458	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr21.45566098.+	chr21	45566098	45566099	+	0	NA	TTS (NM_198155)	TTS (NM_198155)	12604	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr13.51885837.-	chr13	51885837	51885838	-	0	NA	Intergenic	AluSx|SINE|Alu	29331	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr17.5148717.-	chr17	5148717	5148718	-	0	NA	Intergenic	AluSq|SINE|Alu	10562	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr2.38191074.+	chr2	38191074	38191075	+	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	13478	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr19.11591432.-	chr19	11591432	11591433	-	0	NA	"5' UTR (NM_001420, exon 1 of 7)"	"5' UTR (NM_001420, exon 1 of 7)"	-371	NM_032281	1995	Hs.1701	NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	"ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)"	protein-coding
chr2.136403863.+	chr2	136403863	136403864	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19104	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr11.1804409.-	chr11	1804409	1804410	-	0	NA	Intergenic	Intergenic	18908	NM_053005	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr17.77162062.+	chr17	77162062	77162063	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	91043	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr10.69822258.+	chr10	69822258	69822259	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12845	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr1.7952803.+	chr1	7952803	7952804	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39252	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr1.158012602.+	chr1	158012602	158012603	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49539	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr7.21498056.+	chr7	21498056	21498057	+	0	NA	"intron (NM_003112, intron 3 of 5)"	AluSx1|SINE|Alu	30367	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr17.72916050.-	chr17	72916050	72916051	-	0	NA	"exon (NM_173477, exon 2 of 3)"	"exon (NM_173477, exon 2 of 3)"	-3301	NM_173477	124590	Hs.376688	NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	Usher syndrome 1G (autosomal recessive)	protein-coding
chr20.45935927.+	chr20	45935927	45935928	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11319	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr10.76620826.-	chr10	76620826	76620827	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34655	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr19.57148713.-	chr19	57148713	57148714	-	0	NA	Intergenic	AluY|SINE|Alu	5814	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
chr7.39452696.-	chr7	39452696	39452697	-	0	NA	"intron (NM_001166018, intron 7 of 10)"	AluY|SINE|Alu	6751	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	miscRNA
chr4.83939797.-	chr4	83939797	83939798	-	0	NA	Intergenic	AluSq2|SINE|Alu	5757	NM_001115007	132660	Hs.96952	NM_001115007	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120	lin-54 homolog (C. elegans)	protein-coding
chr8.8559278.+	chr8	8559278	8559279	+	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	-388	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr2.121425240.-	chr2	121425240	121425241	-	0	NA	Intergenic	AluY|SINE|Alu	129627	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr19.5409943.-	chr19	5409943	5409944	-	0	NA	Intergenic	AluY|SINE|Alu	45483	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr11.64566244.-	chr11	64566244	64566245	-	0	NA	"intron (NM_004579, intron 15 of 31)"	"intron (NM_004579, intron 15 of 31)"	-4469	NM_004579	5871	Hs.534341	NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
chr6.119182187.+	chr6	119182187	119182188	+	0	NA	"intron (NM_017696, intron 6 of 11)"	MER52A|LTR|ERV1	-33054	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	protein-coding
chr22.46326801.+	chr22	46326801	46326802	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46207	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr16.29422155.+	chr16	29422155	29422156	+	0	NA	Intergenic	AluSx|SINE|Alu	-38511	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr17.70637581.-	chr17	70637581	70637582	-	0	NA	promoter-TSS (NR_033876)	promoter-TSS (NR_033876)	970	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	miscRNA
chr14.87514418.+	chr14	87514418	87514419	+	0	NA	Intergenic	AluY|SINE|Alu	142296	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LOC283585	-	uncharacterized LOC283585	miscRNA
chr10.51545818.+	chr10	51545818	51545819	+	0	NA	Intergenic	AluY|SINE|Alu	-3735	NM_002443	4477	Hs.255462	NM_002443	ENSG00000138294	MSMB	HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94	"microseminoprotein, beta-"	protein-coding
chr19.2307944.+	chr19	2307944	2307945	+	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	212	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr1.59041957.-	chr1	59041957	59041958	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1209	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr20.14910664.+	chr20	14910664	14910665	+	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	-503	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr19.6196963.+	chr19	6196963	6196964	+	0	NA	Intergenic	AluY|SINE|Alu	61253	NM_030924	81616	Hs.465720	NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
chr18.73357731.+	chr18	73357731	73357732	+	0	NA	Intergenic	L2|LINE|L2	-218142	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr8.146052558.+	chr8	146052558	146052559	+	0	NA	promoter-TSS (NM_003416)	promoter-TSS (NM_003416)	-345	NM_003416	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
chr4.131425835.-	chr4	131425835	131425836	-	0	NA	Intergenic	AluY|SINE|Alu	-1408553	NM_001099783	132321	Hs.567679	NM_001099783	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
chr20.44897232.+	chr20	44897232	44897233	+	0	NA	"intron (NM_021248, intron 1 of 11)"	"intron (NM_021248, intron 1 of 11)"	39905	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	"cadherin 22, type 2"	protein-coding
chr16.1845130.+	chr16	1845130	1845131	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-221	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr22.26439767.+	chr22	26439767	26439768	+	0	NA	Intergenic	AluSx3|SINE|Alu	-125673	NM_001184773	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr9.93605399.-	chr9	93605399	93605400	-	0	NA	"intron (NM_001174167, intron 1 of 13)"	"intron (NM_001174167, intron 1 of 13)"	-15694	NM_001174167	6850	Hs.371720	NM_001135052	ENSG00000165025	SYK	p72-Syk	spleen tyrosine kinase	protein-coding
chr1.54966458.-	chr1	54966458	54966459	-	0	NA	Intergenic	AluSq|SINE|Alu	47349	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr7.44887717.-	chr7	44887717	44887718	-	0	NA	promoter-TSS (NM_012412)	promoter-TSS (NM_012412)	-8	NM_201517	94239	Hs.624870	NM_012412	ENSG00000105968	H2AFV	H2AV	"H2A histone family, member V"	protein-coding
chr9.132376394.+	chr9	132376394	132376395	+	0	NA	"intron (NM_199350, intron 4 of 6)"	"intron (NM_199350, intron 4 of 6)"	6661	NM_199350	375759	Hs.124223	NM_199350	ENSG00000179058	C9orf50	-	chromosome 9 open reading frame 50	protein-coding
chr20.62294571.+	chr20	62294571	62294572	+	0	NA	"intron (NR_037882, intron 6 of 37)"	MER68|LTR|ERVL	5408	NM_032957	51750	Hs.434878	NM_016434	ENSG00000258366	RTEL1	C20orf41|NHL|RTEL|bK3184A7.3	regulator of telomere elongation helicase 1	protein-coding
chr3.196619092.+	chr3	196619092	196619093	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24365	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr13.114816103.-	chr13	114816103	114816104	-	0	NA	"intron (NM_007368, intron 3 of 23)"	"intron (NM_007368, intron 3 of 23)"	-81992	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr1.9517674.-	chr1	9517674	9517675	-	0	NA	Intergenic	AluJb|SINE|Alu	81854	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr5.175732258.+	chr5	175732258	175732259	+	0	NA	"intron (NM_198567, intron 3 of 8)"	SVA_F|Other|Other	56551	NM_001079685	57179	Hs.743257	NM_001079684	ENSG00000122203	KIAA1191	p60MONOX	KIAA1191	protein-coding
chr20.52741114.+	chr20	52741114	52741115	+	0	NA	Intergenic	AluSx1|SINE|Alu	49402	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr5.17207781.-	chr5	17207781	17207782	-	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	9151	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr14.105736162.-	chr14	105736162	105736163	-	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	20421	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr5.179373622.-	chr5	179373622	179373623	-	0	NA	Intergenic	AluY|SINE|Alu	38766	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr10.77159165.+	chr10	77159165	77159166	+	0	NA	"exon (NM_032772, exon 2 of 2)"	"exon (NM_032772, exon 2 of 2)"	-2121	NR_024421	100131213	Hs.534598	NR_024421		ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	miscRNA
chr5.178157736.-	chr5	178157736	178157737	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	33	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr16.4835181.-	chr16	4835181	4835182	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3217	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr16.29181184.+	chr16	29181184	29181185	+	0	NA	Intergenic	Intergenic	95021	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
chr11.62551832.+	chr11	62551832	62551833	+	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	-3042	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr17.78397725.-	chr17	78397725	78397726	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4507	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chrY.13489485.+	chrY	13489485	13489486	+	0	NA	Intergenic	LSAU|Satellite|Satellite	1043904	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr11.68855377.-	chr11	68855377	68855378	-	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	-39027	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr2.55647027.+	chr2	55647027	55647028	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	30	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr1.97029513.-	chr1	97029513	97029514	-	0	NA	Intergenic	Intergenic	157662	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr1.241682689.+	chr1	241682689	241682690	+	0	NA	"intron (NM_000143, intron 1 of 9)"	CpG	396	NM_000143	2271	Hs.592490	NM_000143	ENSG00000091483	FH	HLRCC|LRCC|MCL|MCUL1	fumarate hydratase	protein-coding
chr1.90038730.+	chr1	90038730	90038731	+	0	NA	"intron (NM_001134476, intron 5 of 7)"	AluY|SINE|Alu	14458	NM_015350	23507	Hs.741594	NM_001134476	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	"leucine rich repeat containing 8 family, member B"	protein-coding
chr1.236252179.-	chr1	236252179	236252180	-	0	NA	Intergenic	AluY|SINE|Alu	23698	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr3.126260570.-	chr3	126260570	126260571	-	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	-17188	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chrX.40019627.+	chrX	40019627	40019628	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluY|SINE|Alu	16955	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr17.3806695.+	chr17	3806695	3806696	+	0	NA	"intron (NM_002558, intron 6 of 11)"	"intron (NM_002558, intron 6 of 11)"	-10358	NM_032294	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr18.49731955.+	chr18	49731955	49731956	+	0	NA	Intergenic	AluY|SINE|Alu	-134587	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr1.32731833.-	chr1	32731833	32731834	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7879	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr9.34070268.+	chr9	34070268	34070269	+	0	NA	Intergenic	AluSz|SINE|Alu	-21321	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr12.2384441.+	chr12	2384441	2384442	+	0	NA	"intron (NR_046769, intron 1 of 2)"	"intron (NR_046769, intron 1 of 2)"	5499	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	miscRNA
chr8.609780.+	chr8	609780	609781	+	0	NA	Intergenic	Intergenic	71446	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chrX.72289139.+	chrX	72289139	72289140	+	0	NA	Intergenic	SVA_F|Other|Other	10212	NM_001012977	340529	Hs.450320	NM_001012977	ENSG00000186288	PABPC1L2A	RBM32A	"poly(A) binding protein, cytoplasmic 1-like 2A"	protein-coding
chr11.69451960.-	chr11	69451960	69451961	-	0	NA	Intergenic	CpG	3913	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr1.41916703.-	chr1	41916703	41916704	-	0	NA	Intergenic	Intergenic	-33641	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr19.14096042.-	chr19	14096042	14096043	-	0	NA	"intron (NM_002918, intron 2 of 20)"	AluSz6|SINE|Alu	-21092	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chr6.24720941.-	chr6	24720941	24720942	-	0	NA	Intergenic	CpG	1538	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr10.118881413.-	chr10	118881413	118881414	-	0	NA	"intron (NM_001258300, intron 1 of 17)"	AluY|SINE|Alu	-4684	NM_001258300	57698	Hs.501140	NM_001127211	ENSG00000187164	KIAA1598	-	KIAA1598	protein-coding
chr9.140459806.+	chr9	140459806	140459807	+	0	NA	"intron (NM_138778, intron 5 of 8)"	"intron (NM_138778, intron 5 of 8)"	13497	NM_032477	64975	Hs.44017	NM_032477		MRPL41	BMRP|MRP-L27|MRPL27|RPML27	mitochondrial ribosomal protein L41	protein-coding
chr16.30381252.-	chr16	30381252	30381253	-	0	NA	"exon (NM_015527, exon 1 of 9)"	"exon (NM_015527, exon 1 of 9)"	-270	NM_015527	26000	Hs.632182	NM_015527	ENSG00000169221	TBC1D10B	EPI64B	"TBC1 domain family, member 10B"	protein-coding
chr9.77401563.-	chr9	77401563	77401564	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100700	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr14.71374358.+	chr14	71374358	71374359	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	236	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr1.109995543.-	chr1	109995543	109995544	-	0	NA	Intergenic	AluY|SINE|Alu	13557	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr2.70555563.+	chr2	70555563	70555564	+	0	NA	Intergenic	AluY|SINE|Alu	-26343	NM_032822	84908	Hs.516077	NM_032822	ENSG00000035141	FAM136A	-	"family with sequence similarity 136, member A"	protein-coding
chr22.44683395.-	chr22	44683395	44683396	-	0	NA	"intron (NM_001099294, intron 3 of 4)"	"intron (NM_001099294, intron 3 of 4)"	-25336	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
chr10.45240285.+	chr10	45240285	45240286	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166479	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr9.131293132.-	chr9	131293132	131293133	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21705	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr16.70725348.-	chr16	70725348	70725349	-	0	NA	"intron (NM_018052, intron 18 of 18)"	"intron (NM_018052, intron 18 of 18)"	5394	NM_138383	92154	Hs.432387	NM_138383	ENSG00000132613	MTSS1L	ABBA-1	metastasis suppressor 1-like	protein-coding
chr10.28821798.-	chr10	28821798	28821799	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-376	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr4.13525168.+	chr4	13525168	13525169	+	0	NA	Intergenic	CpG	7873	NR_034054	285547	Hs.381892	NR_034054		LOC285547	-	uncharacterized LOC285547	miscRNA
chr21.43198255.-	chr21	43198255	43198256	-	0	NA	Intergenic	Intergenic	11006	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr14.75745951.+	chr14	75745951	75745952	+	0	NA	"intron (NM_005252, intron 1 of 3)"	CpG-7215	470	NM_005252	2353	Hs.731317	NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	FBJ murine osteosarcoma viral oncogene homolog	protein-coding
chr15.90792640.-	chr15	90792640	90792641	-	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	124	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr1.121484516.+	chr1	121484516	121484517	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	223606	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr14.75630927.-	chr14	75630927	75630928	-	0	NA	"intron (NM_006827, intron 1 of 4)"	AluSx|SINE|Alu	-12422	NM_006827	10972	Hs.74137	NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23	transmembrane emp24-like trafficking protein 10 (yeast)	protein-coding
chr9.134449876.+	chr9	134449876	134449877	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43214	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr10.8640543.-	chr10	8640543	8640544	-	0	NA	Intergenic	AluSq2|SINE|Alu	-543876	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr11.122809915.-	chr11	122809915	122809916	-	0	NA	"intron (NM_024806, intron 5 of 8)"	AluSc|SINE|Alu	-42464	NM_001098169	390259	Hs.449687	NM_001098169	ENSG00000188909	BSX	BSX1	brain-specific homeobox	protein-coding
chrX.47215635.-	chrX	47215635	47215636	-	0	NA	Intergenic	AluY|SINE|Alu	14364	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr4.185174138.-	chr4	185174138	185174139	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35024	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr20.19987635.+	chr20	19987635	19987636	+	0	NA	Intergenic	AluY|SINE|Alu	-10299	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr6.34281505.-	chr6	34281505	34281506	-	0	NA	"intron (NM_006703, intron 2 of 4)"	AluY|SINE|Alu	64601	NM_001008704	221491	Hs.381300	NM_001008703	ENSG00000186577	C6orf1	LBH	chromosome 6 open reading frame 1	protein-coding
chr16.71814173.-	chr16	71814173	71814174	-	0	NA	"intron (NM_001030007, intron 2 of 23)"	AluSz|SINE|Alu	21783	NR_003059	692111		NR_003059		SNORD71	HBII-239|MIRN768|hsa-mir-768	"small nucleolar RNA, C/D box 71"	snoRNA
chr2.198058478.+	chr2	198058478	198058479	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117043	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr2.68870494.+	chr2	68870494	68870495	+	0	NA	Intergenic	CpG	-2460	NM_138964	10887	Hs.683430	NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PKR1|ZAQ	prokineticin receptor 1	protein-coding
chr19.49529840.-	chr19	49529840	49529841	-	0	NA	Intergenic	AluSz|SINE|Alu	2208	NM_000737	1082	Hs.743279	NM_000737	ENSG00000104827	CGB	CGB3|CGB5|CGB7|CGB8|hCGB	"chorionic gonadotropin, beta polypeptide"	protein-coding
chr10.104255191.-	chr10	104255191	104255192	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7321	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr7.128142004.-	chr7	128142004	128142005	-	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	-25221	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr22.48136412.+	chr22	48136412	48136413	+	0	NA	Intergenic	Intergenic	-109094	NR_033377	400932	Hs.561058	NM_001001693	ENSG00000205634	FLJ46257	-	uncharacterized LOC400932	miscRNA
chr11.2213950.-	chr11	2213950	2213951	-	0	NA	Intergenic	Intergenic	-19657	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chrX.53125832.+	chrX	53125832	53125833	+	0	NA	Intergenic	AluJb|SINE|Alu	14290	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr21.45684285.+	chr21	45684285	45684286	+	0	NA	Intergenic	AluY|SINE|Alu	-2186	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr4.39561500.+	chr4	39561500	39561501	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32041	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr16.24740942.-	chr16	24740942	24740943	-	0	NA	promoter-TSS (NM_014494)	promoter-TSS (NM_014494)	107	NM_014494	27327	Hs.655057	NM_014494	ENSG00000090905	TNRC6A	CAGH26|GW1|GW182|TNRC6	trinucleotide repeat containing 6A	protein-coding
chr1.21380298.+	chr1	21380298	21380299	+	0	NA	"intron (NM_003760, intron 1 of 31)"	SVA_D|Other|Other	57578	NM_003760	8672	Hs.732241	NM_001198801	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	"eukaryotic translation initiation factor 4 gamma, 3"	protein-coding
chr14.104191560.+	chr14	104191560	104191561	+	0	NA	"intron (NM_024071, intron 1 of 6)"	"intron (NM_024071, intron 1 of 6)"	9479	NM_001198953	79038	Hs.592322	NM_001198953	ENSG00000100711	ZFYVE21	ZF21	"zinc finger, FYVE domain containing 21"	protein-coding
chr16.68233570.+	chr16	68233570	68233571	+	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	36566	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr5.96272073.-	chr5	96272073	96272074	-	0	NA	"intron (NM_005575, intron 1 of 17)"	CpG	-727	NM_005575	4012	Hs.656905	NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl/cystinyl aminopeptidase	protein-coding
chr3.195498045.-	chr3	195498045	195498046	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40799	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr10.46833206.-	chr10	46833206	46833207	-	0	NA	Intergenic	AluY|SINE|Alu	64435	NR_027632	414241	Hs.594331	NR_027632	ENSG00000165874	FAM35BP	FAM35B|bA38L15.1	"family with sequence similarity 35, member A pseudogene"	pseudo
chr19.3766727.-	chr19	3766727	3766728	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4062	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr15.90792659.+	chr15	90792659	90792660	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-105	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr1.7952835.+	chr1	7952835	7952836	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39284	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr12.2858368.-	chr12	2858368	2858369	-	0	NA	Intergenic	L1P3|LINE|L1	-22467	NR_033958	283440	Hs.658536	NR_033958	ENSG00000255669	LOC283440	-	uncharacterized LOC283440	miscRNA
chr21.43109562.+	chr21	43109562	43109563	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10100	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr3.1144556.-	chr3	1144556	1144557	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9927	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr19.34074903.+	chr19	34074903	34074904	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-37958	NM_001127895	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr14.23761697.+	chr14	23761697	23761698	+	0	NA	Intergenic	AluY|SINE|Alu	-6388	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr7.1474515.-	chr7	1474515	1474516	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24594	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr10.102153597.-	chr10	102153597	102153598	-	0	NA	Intergenic	AluSq2|SINE|Alu	-20264	NR_026762	90271	Hs.628088	NR_026762		LINC00263	C10orf75|NCRNA00263	long intergenic non-protein coding RNA 263	miscRNA
chr1.153910997.-	chr1	153910997	153910998	-	0	NA	"intron (NM_014856, intron 13 of 27)"	AluY|SINE|Alu	-8157	NM_014856	9909	Hs.632480	NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN/MADD domain containing 4B	protein-coding
chr16.53282103.-	chr16	53282103	53282104	-	0	NA	"intron (NM_025134, intron 16 of 38)"	AluY|SINE|Alu	-122938	NM_001207030	643802	Hs.673062	NM_001207030		LOC643802	-	u3 small nucleolar ribonucleoprotein protein MPP10-like	protein-coding
chr14.101693729.+	chr14	101693729	101693730	+	0	NA	Intergenic	Intergenic	157481	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr17.38400029.+	chr17	38400029	38400030	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24455	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr22.38008300.+	chr22	38008300	38008301	+	0	NA	"intron (NM_001172688, intron 1 of 17)"	AluY|SINE|Alu	3253	NM_001172688	26088	Hs.499158	NM_001001560	ENSG00000100083	GGA1	-	"golgi-associated, gamma adaptin ear containing, ARF binding protein 1"	protein-coding
chr7.13141806.-	chr7	13141806	13141807	-	0	NA	Intergenic	SVA_D|Other|Other	-414895	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr2.240361447.+	chr2	240361447	240361448	+	0	NA	Intergenic	Intergenic	-38804	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr8.1323017.-	chr8	1323017	1323018	-	0	NA	Intergenic	Intergenic	72190	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr17.45897155.-	chr17	45897155	45897156	-	0	NA	"intron (NM_145798, intron 3 of 22)"	"intron (NM_145798, intron 3 of 22)"	-1992	NM_145798	114881	Hs.463320	NM_145798	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
chr2.10424833.-	chr2	10424833	10424834	-	0	NA	Intergenic	Intergenic	18197	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr19.39900694.+	chr19	39900694	39900695	+	0	NA	promoter-TSS (NR_039755)	promoter-TSS (NR_039755)	-376	NR_039755	100616163		NR_039755	ENSG00000266559	MIR4530	-	microRNA 4530	miscRNA
chr20.34266473.+	chr20	34266473	34266474	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13595	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr2.44294157.+	chr2	44294157	44294158	+	0	NA	Intergenic	SVA_D|Other|Other	-71013	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr8.120878153.+	chr8	120878153	120878154	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7747	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr12.75694194.-	chr12	75694194	75694195	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29642	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr4.5981968.+	chr4	5981968	5981969	+	0	NA	Intergenic	Intergenic	-56913	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	-	microRNA 378d-1	miscRNA
chr14.107211183.+	chr14	107211183	107211184	+	0	NA	Intergenic	Intergenic	272728	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	miscRNA
chr11.119598383.+	chr11	119598383	119598384	+	0	NA	"intron (NM_203286, intron 1 of 5)"	CpG	1052	NM_203286	5818	Hs.334846	NM_002855	ENSG00000110400	PVRL1	CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
chr13.113863978.-	chr13	113863978	113863979	-	0	NA	promoter-TSS (NM_018386)	promoter-TSS (NM_018386)	-47	NM_001008895	8451	Hs.339735	NM_001008895	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
chr17.2731903.-	chr17	2731903	2731904	-	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	-32171	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr13.45945054.-	chr13	45945054	45945055	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29574	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr12.111714745.-	chr12	111714745	111714746	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92180	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr4.77348131.-	chr4	77348131	77348132	-	0	NA	Intergenic	AluY|SINE|Alu	8122	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr10.8640516.-	chr10	8640516	8640517	-	0	NA	Intergenic	AluSq2|SINE|Alu	-543849	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr17.47583500.+	chr17	47583500	47583501	+	0	NA	"intron (NM_002507, intron 2 of 5)"	"intron (NM_002507, intron 2 of 5)"	10845	NM_002507	4804	Hs.681726	NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
chr6.65337791.+	chr6	65337791	65337792	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673520	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr12.64237840.-	chr12	64237840	64237841	-	0	NA	promoter-TSS (NM_020762)	promoter-TSS (NM_020762)	701	NM_020762	57522	Hs.593803	NM_020762	ENSG00000196935	SRGAP1	ARHGAP13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
chr4.152027776.+	chr4	152027776	152027777	+	0	NA	Intergenic	AluSx3|SINE|Alu	2797	NR_000007	8944		NR_000007		SNORD73A	RNU73|RNU73A|U73|U73a	"small nucleolar RNA, C/D box 73A"	snoRNA
chr10.12223703.-	chr10	12223703	12223704	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14258	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr10.133203436.-	chr10	133203436	133203437	-	0	NA	Intergenic	Intergenic	93452	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr16.30810983.-	chr16	30810983	30810984	-	0	NA	Intergenic	AluSx|SINE|Alu	12460	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr14.21741129.-	chr14	21741129	21741130	-	0	NA	Intergenic	AluSx1|SINE|Alu	3491	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr15.29130804.+	chr15	29130804	29130805	+	0	NA	Intergenic	CpG	-36983	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr20.29640162.-	chr20	29640162	29640163	-	0	NA	Intergenic	SVA_D|Other|Other	2024	NR_045115	140678	Hs.653099	NR_045115		MLLT10P1	MLLT10L|bA348I14.3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1"	pseudo
chr17.77657018.+	chr17	77657018	77657019	+	0	NA	Intergenic	AluY|SINE|Alu	24040	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	-	microRNA 4739	miscRNA
chr8.145771065.+	chr8	145771065	145771066	+	0	NA	"exon (NM_025251, exon 7 of 13)"	"exon (NM_025251, exon 7 of 13)"	-16607	NM_001001795	414919	Hs.105685	NM_001001795		C8orf82	-	chromosome 8 open reading frame 82	protein-coding
chr7.50673326.-	chr7	50673326	50673327	-	0	NA	"intron (NM_001001549, intron 10 of 14)"	"intron (NM_001001549, intron 10 of 14)"	40172	NM_001082971	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
chr2.47630493.+	chr2	47630493	47630494	+	0	NA	"exon (NM_000251, exon 1 of 16)"	"exon (NM_000251, exon 1 of 16)"	287	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr1.163468391.-	chr1	163468391	163468392	-	0	NA	Intergenic	SVA_A|Other|Other	-176668	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr10.135075431.-	chr10	135075431	135075432	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14307	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr11.66970126.-	chr11	66970126	66970127	-	0	NA	"intron (NM_012308, intron 5 of 20)"	AluY|SINE|Alu	37380	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr8.144503743.+	chr8	144503743	144503744	+	0	NA	Intergenic	CpG	8859	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr17.77982008.-	chr17	77982008	77982009	-	0	NA	"intron (NM_019020, intron 3 of 11)"	"intron (NM_019020, intron 3 of 11)"	-27649	NM_019020	125058	Hs.369819	NM_001271844		TBC1D16	-	"TBC1 domain family, member 16"	protein-coding
chr8.56889625.+	chr8	56889625	56889626	+	0	NA	"intron (NM_002350, intron 10 of 12)"	AluSq|SINE|Alu	96835	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr11.792126.+	chr11	792126	792127	+	0	NA	"intron (NM_024698, intron 9 of 9)"	CpG	-2000	NM_016564	51286	Hs.22140	NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
chr15.22685227.-	chr15	22685227	22685228	-	0	NA	Intergenic	AluY|SINE|Alu	9986	NR_039732	100616223		NR_039732	ENSG00000263930	MIR4509-1	-	microRNA 4509-1	miscRNA
chr1.6471012.+	chr1	6471012	6471013	+	0	NA	Intergenic	AluSz|SINE|Alu	8967	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chrX.53111635.+	chrX	53111635	53111636	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	93	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.109308552.+	chr2	109308552	109308553	+	0	NA	Intergenic	AluY|SINE|Alu	-27385	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr3.182599180.+	chr3	182599180	182599181	+	0	NA	"intron (NM_014616, intron 21 of 29)"	AluSx|SINE|Alu	87889	NM_014616	23200	Hs.478429	NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	"ATPase, class VI, type 11B"	protein-coding
chr7.2933079.-	chr7	2933079	2933080	-	0	NA	Intergenic	AluSx1|SINE|Alu	49120	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr16.84754629.-	chr16	84754629	84754630	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	-21074	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr4.1223440.+	chr4	1223440	1223441	+	0	NA	"intron (NM_001012614, intron 3 of 9)"	"intron (NM_001012614, intron 3 of 9)"	19468	NM_001012614	1487	Hs.208597	NM_001012614	ENSG00000159692	CTBP1	BARS	C-terminal binding protein 1	protein-coding
chr4.177147022.-	chr4	177147022	177147023	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30200	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr14.106359728.-	chr14	106359728	106359729	-	0	NA	Intergenic	Intergenic	24110	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr14.54423526.-	chr14	54423526	54423527	-	0	NA	promoter-TSS (NM_001202)	promoter-TSS (NM_001202)	-28	NM_130850	652	Hs.68879	NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
chr13.65308088.+	chr13	65308088	65308089	+	0	NA	Intergenic	AluSc8|SINE|Alu	996520	NR_002171	283491	Hs.694575	NR_002171		OR7E156P	-	"olfactory receptor, family 7, subfamily E, member 156 pseudogene"	pseudo
chr16.1845134.+	chr16	1845134	1845135	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-225	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr17.46916964.+	chr17	46916964	46916965	+	0	NA	"intron (NM_001261395, intron 1 of 11)"	AluSx1|SINE|Alu	8614	NM_001261393	10241	Hs.514920	NM_001261390	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
chr10.12458917.+	chr10	12458917	12458918	+	0	NA	"intron (NM_020397, intron 1 of 9)"	"intron (NM_020397, intron 1 of 9)"	67334	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr9.137722663.+	chr9	137722663	137722664	+	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	18552	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr1.120192112.+	chr1	120192112	120192113	+	0	NA	Intergenic	AluY|SINE|Alu	-1722	NM_001080470	90874	Hs.381105	NM_001080470	ENSG00000143067	ZNF697	-	zinc finger protein 697	protein-coding
chr8.86544453.-	chr8	86544453	86544454	-	0	NA	Intergenic	AluSp|SINE|Alu	-23452	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr12.49163975.-	chr12	49163975	49163976	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1845	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr19.8298144.-	chr19	8298144	8298145	-	0	NA	"intron (NM_024552, intron 2 of 11)"	AluSx|SINE|Alu	-23927	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
chr10.7626556.+	chr10	7626556	7626557	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35080	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr1.113948894.-	chr1	113948894	113948895	-	0	NA	"intron (NM_152900, intron 1 of 20)"	AluJo|SINE|Alu	-15419	NM_152900	260425	Hs.486189	NM_020965	ENSG00000081026	MAGI3	MAGI-3|RP4-730K3.1|dJ730K3.2	"membrane associated guanylate kinase, WW and PDZ domain containing 3"	protein-coding
chr17.27070014.-	chr17	27070014	27070015	-	0	NA	TTS (NM_178170)	TTS (NM_178170)	1009	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr9.138065685.+	chr9	138065685	138065686	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7770	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr19.40697266.+	chr19	40697266	40697267	+	0	NA	promoter-TSS (NM_002446)	promoter-TSS (NM_002446)	-385	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr11.44361791.-	chr11	44361791	44361792	-	0	NA	Intergenic	AluJb|SINE|Alu	30075	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr7.1798918.-	chr7	1798918	1798919	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50120	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr10.104255211.+	chr10	104255211	104255212	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7301	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr19.1855613.+	chr19	1855613	1855614	+	0	NA	"intron (NM_031918, intron 1 of 1)"	"intron (NM_031918, intron 1 of 1)"	-7161	NM_020695	57455	Hs.192477	NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)"	protein-coding
chr14.23517088.+	chr14	23517088	23517089	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5712	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr5.168556387.+	chr5	168556387	168556388	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134311	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chr11.31560830.+	chr11	31560830	31560831	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29533	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr5.55668520.+	chr5	55668520	55668521	+	0	NA	Intergenic	SVA_D|Other|Other	-139334	NM_024669	79722	Hs.436214	NM_001039935	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
chr18.55445718.+	chr18	55445718	55445719	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24609	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr18.38415914.-	chr18	38415914	38415915	-	0	NA	Intergenic	AluY|SINE|Alu	-684647	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr13.50222211.-	chr13	50222211	50222212	-	0	NA	Intergenic	AluY|SINE|Alu	-19776	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr1.61398377.-	chr1	61398377	61398378	-	0	NA	Intergenic	AluY|SINE|Alu	144569	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chrM.6579.-	chrM	6579	6580	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr8.62051824.+	chr8	62051824	62051825	+	0	NA	Intergenic	CpG	-148701	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
chr19.14508471.-	chr19	14508471	14508472	-	0	NA	"exon (NM_078481, exon 7 of 20)"	"exon (NM_078481, exon 7 of 20)"	-16515	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr16.65697041.-	chr16	65697041	65697042	-	0	NA	Intergenic	AluY|SINE|Alu	86838	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LOC283867	-	uncharacterized LOC283867	miscRNA
chr5.2391214.-	chr5	2391214	2391215	-	0	NA	Intergenic	Intergenic	-360555	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr20.62108085.-	chr20	62108085	62108086	-	0	NA	Intergenic	AluSq2|SINE|Alu	4092	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr19.7123242.+	chr19	7123242	7123243	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53771	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr19.4065749.-	chr19	4065749	4065750	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1067	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr2.121244099.+	chr2	121244099	121244100	+	0	NA	Intergenic	Intergenic	-20174	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr17.30414151.-	chr17	30414151	30414152	-	0	NA	Intergenic	FLAM_A|SINE|Alu	-46796	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
chr12.54618118.-	chr12	54618118	54618119	-	0	NA	Intergenic	AluY|SINE|Alu	-7142	NR_039851	100616400		NR_039851	ENSG00000265371	MIR3198-2	-	microRNA 3198-2	miscRNA
chr9.719221.+	chr9	719221	719222	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12415	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr5.1466237.-	chr5	1466237	1466238	-	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	20694	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chrX.9366116.-	chrX	9366116	9366117	-	0	NA	Intergenic	AluY|SINE|Alu	65219	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr1.17267877.+	chr1	17267877	17267878	+	0	NA	"intron (NM_014675, intron 13 of 36)"	AluSx|SINE|Alu	19432	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr17.81024627.+	chr17	81024627	81024628	+	0	NA	Intergenic	Intergenic	-12940	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr10.59351312.-	chr10	59351312	59351313	-	0	NA	Intergenic	AluY|SINE|Alu	286993	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr4.99849709.+	chr4	99849709	99849710	+	0	NA	"intron (NM_001968, intron 1 of 6)"	CpG	534	NM_001130678	1977	Hs.249718	NM_001130678		EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F	eukaryotic translation initiation factor 4E	protein-coding
chr4.77348103.+	chr4	77348103	77348104	+	0	NA	Intergenic	AluY|SINE|Alu	-8150	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr5.86907869.+	chr5	86907869	86907870	+	0	NA	Intergenic	AluY|SINE|Alu	-199019	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr3.42630483.-	chr3	42630483	42630484	-	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	1815	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr14.24838006.-	chr14	24838006	24838007	-	0	NA	promoter-TSS (NM_001198966)	promoter-TSS (NM_001198966)	296	NM_001198966	4776	Hs.77810	NM_001136022	ENSG00000100968	NFATC4	NF-ATc4|NFAT3	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4"	protein-coding
chr22.49428526.-	chr22	49428526	49428527	-	0	NA	Intergenic	Intergenic	-165944	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr9.135947033.+	chr9	135947033	135947034	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9668	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr4.103422420.-	chr4	103422420	103422421	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	66	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr22.26566283.+	chr22	26566283	26566284	+	0	NA	"intron (NM_021115, intron 1 of 16)"	"intron (NM_021115, intron 1 of 16)"	843	NM_001184777	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr19.19296212.+	chr19	19296212	19296213	+	0	NA	"intron (NM_005919, intron 1 of 9)"	"intron (NM_005919, intron 1 of 9)"	-6796	NM_003721	8625	Hs.296776	NM_003721	ENSG00000064490	RFXANK	ANKRA1|BLS|F14150_1|RFX-B	regulatory factor X-associated ankyrin-containing protein	protein-coding
chr5.130506711.+	chr5	130506711	130506712	+	0	NA	promoter-TSS (NM_181705)	promoter-TSS (NM_181705)	70	NM_181705	90624	Hs.115467	NM_181705	ENSG00000186687	LYRM7	C5orf31	LYR motif containing 7	protein-coding
chr3.49479597.-	chr3	49479597	49479598	-	0	NA	Intergenic	AluSx1|SINE|Alu	12840	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr6.8388431.+	chr6	8388431	8388432	+	0	NA	Intergenic	LTR9|LTR|ERV1	47363	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr5.141558660.-	chr5	141558660	141558661	-	0	NA	Intergenic	AluSg|SINE|Alu	-70336	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr7.5582598.-	chr7	5582598	5582599	-	0	NA	Intergenic	Intergenic	12366	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr7.47487721.-	chr7	47487721	47487722	-	0	NA	"intron (NM_022748, intron 4 of 30)"	"intron (NM_022748, intron 4 of 30)"	-134021	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
chr3.48117724.+	chr3	48117724	48117725	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13045	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr2.108084848.+	chr2	108084848	108084849	+	0	NA	Intergenic	LTR12C|LTR|ERV1	357735	NR_024439	729121	Hs.386155	XR_159390	ENSG00000230651	LOC729121	-	uncharacterized LOC729121	miscRNA
chr7.5244741.-	chr7	5244741	5244742	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9159	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr6.168149277.+	chr6	168149277	168149278	+	0	NA	Intergenic	Intergenic	48262	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chrX.23801527.-	chrX	23801527	23801528	-	0	NA	"exon (NM_002970, exon 1 of 6)"	"exon (NM_002970, exon 1 of 6)"	-252	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr13.96742900.-	chr13	96742900	96742901	-	0	NA	promoter-TSS (NM_153456)	promoter-TSS (NM_153456)	193	NM_153456	266722	Hs.740393	XM_003846570		HS6ST3	HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
chr13.111268297.-	chr13	111268297	111268298	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-366	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr6.154868726.+	chr6	154868726	154868727	+	0	NA	Intergenic	AluY|SINE|Alu	-36973	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding
chr2.27588366.-	chr2	27588366	27588367	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4553	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr5.178157729.+	chr5	178157729	178157730	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-26	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr7.140400256.+	chr7	140400256	140400257	+	0	NA	"intron (NM_004546, intron 1 of 3)"	"intron (NM_004546, intron 1 of 3)"	-3379	NR_024454	100134713	Hs.743663	NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	miscRNA
chr8.37698948.-	chr8	37698948	37698949	-	0	NA	"exon (NM_032777, exon 19 of 19)"	"exon (NM_032777, exon 19 of 19)"	-8483	NM_018310	55290	Hs.709301	NM_018310		BRF2	BRFU|TFIIIB50	"BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like"	protein-coding
chr15.89219710.-	chr15	89219710	89219711	-	0	NA	Intergenic	AluSx|SINE|Alu	-37671	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
chr6.144923470.+	chr6	144923470	144923471	+	0	NA	"intron (NM_007124, intron 50 of 73)"	AluSx3|SINE|Alu	310597	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr2.1590778.+	chr2	1590778	1590779	+	0	NA	Intergenic	Intergenic	157513	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr5.115339486.+	chr5	115339486	115339487	+	0	NA	"intron (NM_173800, intron 12 of 19)"	AluY|SINE|Alu	41335	NM_173800	206338	Hs.98288	NM_173800	ENSG00000172901	AQPEP	APQ|LVRN	laeverin	protein-coding
chr11.1454727.+	chr11	1454727	1454728	+	0	NA	"intron (NM_001256630, intron 1 of 19)"	"intron (NM_001256630, intron 1 of 19)"	22345	NM_001256630	9024	Hs.170819	NM_001256627	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|STK29	BR serine/threonine kinase 2	protein-coding
chr11.100596589.-	chr11	100596589	100596590	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38182	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr16.33730683.-	chr16	33730683	33730684	-	0	NA	Intergenic	CpG	167440	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76	-	"RNA, U6 small nuclear 76"	snRNA
chr16.88257872.+	chr16	88257872	88257873	+	0	NA	Intergenic	Intergenic	-236007	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr4.41386510.+	chr4	41386510	41386511	+	0	NA	"intron (NM_001112717, intron 1 of 25)"	AluY|SINE|Alu	23706	NM_001112718	22998	Hs.335163	NM_001112717	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
chr19.16957642.-	chr19	16957642	16957643	-	0	NA	"intron (NM_015260, intron 4 of 19)"	"intron (NM_015260, intron 4 of 19)"	-17433	NM_015260	23309	Hs.13999	NM_015260	ENSG00000127511	SIN3B	-	SIN3 transcription regulator homolog B (yeast)	protein-coding
chr16.8974132.-	chr16	8974132	8974133	-	0	NA	Intergenic	Intergenic	11269	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr11.62438136.-	chr11	62438136	62438137	-	0	NA	promoter-TSS (NM_001085372)	promoter-TSS (NM_001085372)	990	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chr11.62418861.-	chr11	62418861	62418862	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-1913	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr14.21493783.-	chr14	21493783	21493784	-	0	NA	promoter-TSS (NM_201540)	promoter-TSS (NM_201540)	-152	NM_201535	57447	Hs.525205	NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
chr7.99698237.+	chr7	99698237	99698238	+	0	NA	promoter-TSS (NM_004722)	promoter-TSS (NM_004722)	143	NM_182776	4176	Hs.438720	NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146	minichromosome maintenance complex component 7	protein-coding
chr20.32321014.+	chr20	32321014	32321015	+	0	NA	"intron (NM_032819, intron 1 of 14)"	AluSx|SINE|Alu	1206	NM_032819	84905	Hs.516989	NM_032819	ENSG00000131061	ZNF341	-	zinc finger protein 341	protein-coding
chr7.100176875.-	chr7	100176875	100176876	-	0	NA	"intron (NM_002319, intron 4 of 17)"	"intron (NM_002319, intron 4 of 17)"	5605	NM_001168682	100316904	Hs.633863	NM_001168682	ENSG00000205307	SAP25	-	"Sin3A-associated protein, 25kDa"	protein-coding
chrX.39680390.+	chrX	39680390	39680391	+	0	NA	Intergenic	CpG	276329	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr6.126111992.-	chr6	126111992	126111993	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-83	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr4.2878522.+	chr4	2878522	2878523	+	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	32938	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr6.126111892.+	chr6	126111892	126111893	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-17	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr3.20070765.-	chr3	20070765	20070766	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10759	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr11.9503840.+	chr11	9503840	9503841	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21328	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr9.66837949.-	chr9	66837949	66837950	-	0	NA	Intergenic	Intergenic	-194123	NR_046175	286297	Hs.645503	NR_046175	ENSG00000182021	LOC286297	-	uncharacterized LOC286297	miscRNA
chr15.29132961.-	chr15	29132961	29132962	-	0	NA	Intergenic	Intergenic	39140	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr22.51142891.+	chr22	51142891	51142892	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29821	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr3.88595873.-	chr3	88595873	88595874	-	0	NA	Intergenic	AluSc8|SINE|Alu	396857	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr16.31932504.-	chr16	31932504	31932505	-	0	NA	Intergenic	AluY|SINE|Alu	-47425	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr5.28928026.+	chr5	28928026	28928027	+	0	NA	TTS (NR_033961)	TTS (NR_033961)	1049	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr12.54333382.-	chr12	54333382	54333383	-	0	NA	promoter-TSS (NR_047507)	promoter-TSS (NR_047507)	-45	NR_047507	100874366	Hs.547385	NR_047507	ENSG00000249641	HOXC-AS5	-	HOXC cluster antisense RNA 5	miscRNA
chr22.46504435.-	chr22	46504435	46504436	-	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	4194	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr19.54076855.-	chr19	54076855	54076856	-	0	NA	"intron (NM_001253798, intron 6 of 6)"	AluJb|SINE|Alu	-18294	NM_001079907	55422	Hs.185674	NM_001079906	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
chr2.203320662.+	chr2	203320662	203320663	+	0	NA	"intron (NM_001204, intron 1 of 12)"	AluY|SINE|Alu	79612	NM_001204	659	Hs.471119	NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|PPH1|T-ALK	"bone morphogenetic protein receptor, type II (serine/threonine kinase)"	protein-coding
chr8.22594679.+	chr8	22594679	22594680	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43864	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr19.12851384.+	chr19	12851384	12851385	+	0	NA	"intron (NM_004317, intron 2 of 6)"	AluY|SINE|Alu	3078	NM_004317	439	Hs.465985	NM_004317	ENSG00000198356	ASNA1	ARSA-I|ARSA1|ASNA-I|GET3|TRC40|hASNA-I	"arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)"	protein-coding
chr16.70148603.+	chr16	70148603	70148604	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1074	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr12.96899125.+	chr12	96899125	96899126	+	0	NA	Intergenic	AluSg|SINE|Alu	-104759	NM_001170464	5128	Hs.506415	NM_001170464	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
chr3.13876346.+	chr3	13876346	13876347	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45272	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chrM.16502.+	chrM	16502	16503	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr8.30590285.+	chr8	30590285	30590286	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4799	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr16.30960883.-	chr16	30960883	30960884	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-478	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr16.73461738.-	chr16	73461738	73461739	-	0	NA	Intergenic	AluSg|SINE|Alu	-41034	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr19.4479499.-	chr19	4479499	4479500	-	0	NA	"intron (NM_001001520, intron 3 of 16)"	AluY|SINE|Alu	-7244	NM_032631	84717	Hs.43071	NM_001001520	ENSG00000167674	HDGFRP2	HDGF2	hepatoma-derived growth factor-related protein 2	protein-coding
chr6.163752489.-	chr6	163752489	163752490	-	0	NA	Intergenic	Intergenic	6984	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr7.68978381.+	chr7	68978381	68978382	+	0	NA	Intergenic	MER72|LTR|ERV1	-85524	NM_001127231	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr12.110715037.-	chr12	110715037	110715038	-	0	NA	Intergenic	AluSg|SINE|Alu	3995	NM_001681	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	"ATPase, Ca++ transporting, cardiac muscle, slow twitch 2"	protein-coding
chr1.8021818.-	chr1	8021818	8021819	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-104	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr9.139702612.-	chr9	139702612	139702613	-	0	NA	TTS (NM_001039374)	TTS (NM_001039374)	-238	NM_024718	55684	Hs.370555	NM_001173988	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	"RAB, member RAS oncogene family-like 6"	protein-coding
chr14.105242418.+	chr14	105242418	105242419	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17520	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr10.76620824.-	chr10	76620824	76620825	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34653	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr1.247470022.-	chr1	247470022	247470023	-	0	NA	"intron (NM_032752, intron 8 of 8)"	AluSx1|SINE|Alu	-25023	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr2.90482938.+	chr2	90482938	90482939	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365037	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr9.133797641.-	chr9	133797641	133797642	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-16598	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr11.9503853.+	chr11	9503853	9503854	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21341	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr19.23432253.-	chr19	23432253	23432254	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-919	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr17.57884683.+	chr17	57884683	57884684	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33944	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr14.77743550.+	chr14	77743550	77743551	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5895	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chrX.43991572.-	chrX	43991572	43991573	-	0	NA	Intergenic	AluY|SINE|Alu	158651	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
chr2.240371719.-	chr2	240371719	240371720	-	0	NA	Intergenic	SVA_D|Other|Other	49076	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr12.48744939.-	chr12	48744939	48744940	-	0	NA	promoter-TSS (NM_001172681)	promoter-TSS (NM_001172681)	-90	NM_001172682	121274	Hs.23492	NM_001172681	ENSG00000167528	ZNF641	-	zinc finger protein 641	protein-coding
chr19.549014.-	chr19	549014	549015	-	0	NA	"exon (NM_005317, exon 4 of 5)"	"exon (NM_005317, exon 4 of 5)"	-4980	NM_005317	3004	Hs.465511	NM_001258351	ENSG00000197540	GZMM	LMET1|MET1	granzyme M (lymphocyte met-ase 1)	protein-coding
chr18.57476943.+	chr18	57476943	57476944	+	0	NA	Intergenic	AluSz|SINE|Alu	-90249	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
chr1.101786810.-	chr1	101786810	101786811	-	0	NA	Intergenic	AluY|SINE|Alu	-19641	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr17.48207419.-	chr17	48207419	48207420	-	0	NA	promoter-TSS (NM_174920)	promoter-TSS (NM_174920)	173	NM_001257359	201191	Hs.567769	NM_001257359	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
chr1.40260017.+	chr1	40260017	40260018	+	0	NA	Intergenic	AluY|SINE|Alu	-5484	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr13.110832797.+	chr13	110832797	110832798	+	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	126699	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chr19.57148714.-	chr19	57148714	57148715	-	0	NA	Intergenic	AluY|SINE|Alu	5813	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
chr13.77954558.-	chr13	77954558	77954559	-	0	NA	Intergenic	AluSc|SINE|Alu	53381	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr1.84971709.-	chr1	84971709	84971710	-	0	NA	"exon (NM_005274, exon 2 of 4)"	"exon (NM_005274, exon 2 of 4)"	-553	NM_005274	2787	Hs.645427	NM_005274	ENSG00000174021	GNG5	-	"guanine nucleotide binding protein (G protein), gamma 5"	protein-coding
chr8.26047073.-	chr8	26047073	26047074	-	0	NA	Intergenic	AluSx1|SINE|Alu	101934	NM_002717	5520	Hs.146339	NM_001177591	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	"protein phosphatase 2, regulatory subunit B, alpha"	protein-coding
chr6.168533507.+	chr6	168533507	168533508	+	0	NA	Intergenic	Intergenic	-53668	NM_024919	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr16.70133266.+	chr16	70133266	70133267	+	0	NA	Intergenic	AluY|SINE|Alu	-14263	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chrM.4463.-	chrM	4463	4464	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr10.28821775.+	chr10	28821775	28821776	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	353	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr20.43331633.-	chr20	43331633	43331634	-	0	NA	Intergenic	Intergenic	12252	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr17.78888151.-	chr17	78888151	78888152	-	0	NA	"intron (NM_020761, intron 21 of 33)"	MER52A|LTR|ERV1	77490	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr16.8974121.+	chr16	8974121	8974122	+	0	NA	Intergenic	Intergenic	-11258	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr8.144504262.-	chr8	144504262	144504263	-	0	NA	Intergenic	Intergenic	-8340	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr21.47838709.-	chr21	47838709	47838710	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40153	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr15.59685749.-	chr15	59685749	59685750	-	0	NA	Intergenic	AluSg4|SINE|Alu	20678	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
chr7.807506.+	chr7	807506	807507	+	0	NA	"intron (NR_075098, intron 8 of 12)"	CpG	-40193	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr20.62468152.+	chr20	62468152	62468153	+	0	NA	Intergenic	Intergenic	-24414	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr1.155036415.-	chr1	155036415	155036416	-	0	NA	promoter-TSS (NR_040773)	promoter-TSS (NR_040773)	-52	NR_040773	100505666	Hs.657533	NR_040772		LOC100505666	-	uncharacterized LOC100505666	miscRNA
chr1.151573455.-	chr1	151573455	151573456	-	0	NA	Intergenic	SVA_E|Other|Other	11207	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr20.33005278.+	chr20	33005278	33005279	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48852	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr10.116244392.+	chr10	116244392	116244393	+	0	NA	"intron (NM_001003407, intron 8 of 21)"	AluSx1|SINE|Alu	42293	NM_006720	3983	Hs.593868	NM_001003407	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
chr20.23330912.-	chr20	23330912	23330913	-	0	NA	promoter-TSS (NM_013248)	promoter-TSS (NM_013248)	461	NM_013248	29107	Hs.516933	NM_013248	ENSG00000132661	NXT1	MTR2|P15	NTF2-like export factor 1	protein-coding
chr2.101245838.+	chr2	101245838	101245839	+	0	NA	Intergenic	Intergenic	66420	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr13.40930737.-	chr13	40930737	40930738	-	0	NA	"intron (NR_024506, intron 5 of 5)"	L1PA2|LINE|L1	-124406	NR_024507	646982	Hs.287664	NR_024505		LINC00598	TTL	long intergenic non-protein coding RNA 598	miscRNA
chr2.109308558.-	chr2	109308558	109308559	-	0	NA	Intergenic	AluY|SINE|Alu	27379	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr9.133788105.+	chr9	133788105	133788106	+	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-18880	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr17.59488871.+	chr17	59488871	59488872	+	0	NA	promoter-TSS (NM_203425)	promoter-TSS (NM_203425)	-241	NM_203425	388407	Hs.434459	NM_203425	ENSG00000187013	C17orf82	-	chromosome 17 open reading frame 82	protein-coding
chr10.81146771.-	chr10	81146771	81146772	-	0	NA	"intron (NM_153367, intron 3 of 3)"	"intron (NM_153367, intron 3 of 3)"	-39551	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr8.23379467.+	chr8	23379467	23379468	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6896	NM_016612	51312	Hs.726050	NM_016612		SLC25A37	MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	"solute carrier family 25 (mitochondrial iron transporter), member 37"	protein-coding
chr22.31732650.-	chr22	31732650	31732651	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9599	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr19.10408164.+	chr19	10408164	10408165	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7509	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr9.6559768.-	chr9	6559768	6559769	-	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	-85924	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr1.26778172.-	chr1	26778172	26778173	-	0	NA	"intron (NM_205861, intron 6 of 8)"	AluY|SINE|Alu	-19399	NM_205861	79947	Hs.369385	NM_001243564	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase	protein-coding
chr13.32980201.-	chr13	32980201	32980202	-	0	NA	"intron (NM_052818, intron 3 of 4)"	AluY|SINE|Alu	-22114	NM_052818	90634	Hs.732118	NM_001079691	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
chr10.123791050.-	chr10	123791050	123791051	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42361	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr2.44294164.-	chr2	44294164	44294165	-	0	NA	Intergenic	SVA_D|Other|Other	71020	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chrY.59004225.-	chrY	59004225	59004226	-	0	NA	Intergenic	AluSq2|SINE|Alu	96232	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
chr2.136133267.+	chr2	136133267	136133268	+	0	NA	"intron (NM_032143, intron 3 of 20)"	AluY|SINE|Alu	155539	NM_032143	84083	Hs.658422	NM_032143	ENSG00000121988	ZRANB3	4933425L19Rik|AH2	"zinc finger, RAN-binding domain containing 3"	protein-coding
chrX.19862924.-	chrX	19862924	19862925	-	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	-42820	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr2.240980346.-	chr2	240980346	240980347	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2053	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr11.66384777.+	chr11	66384777	66384778	+	0	NA	"intron (NM_001198846, intron 1 of 1)"	CpG	724	NM_006328	10432	Hs.533712	NM_001198836		RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
chr7.2944138.-	chr7	2944138	2944139	-	0	NA	Intergenic	Intergenic	60179	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chrX.1379068.+	chrX	1379068	1379069	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8625	NM_172249	1438	Hs.520937	NM_001161529	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	"colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)"	protein-coding
chr14.20778827.+	chr14	20778827	20778828	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4674	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr4.1626795.-	chr4	1626795	1626796	-	0	NA	Intergenic	CpG	-58923	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr9.138065629.+	chr9	138065629	138065630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7826	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr7.80622734.+	chr7	80622734	80622735	+	0	NA	Intergenic	AluY|SINE|Alu	-74067	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C"	protein-coding
chr1.54953465.-	chr1	54953465	54953466	-	0	NA	Intergenic	Intergenic	60342	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr2.90482973.+	chr2	90482973	90482974	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365002	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr17.15160766.+	chr17	15160766	15160767	+	0	NA	"intron (NM_000304, intron 3 of 4)"	"intron (NM_000304, intron 3 of 4)"	3327	NM_153322	5376	Hs.372031	NM_000304	ENSG00000109099	PMP22	CMT1A|CMT1E|DSS|GAS-3|HMSNIA|HNPP|Sp110	peripheral myelin protein 22	protein-coding
chr4.190662173.+	chr4	190662173	190662174	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199801	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr19.41868014.-	chr19	41868014	41868015	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1857	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr11.17160890.-	chr11	17160890	17160891	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30464	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr1.43081223.+	chr1	43081223	43081224	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42825	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr16.81731147.-	chr16	81731147	81731148	-	0	NA	"intron (NM_198390, intron 14 of 20)"	MIR3|SINE|MIR	-32188	NR_045112	100129617	Hs.657151	NR_045112		LOC100129617	-	uncharacterized LOC100129617	miscRNA
chr7.129803731.-	chr7	129803731	129803732	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41607	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr1.6471013.+	chr1	6471013	6471014	+	0	NA	Intergenic	AluSz|SINE|Alu	8966	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr16.2009378.-	chr16	2009378	2009379	-	0	NA	promoter-TSS (NM_004548)	promoter-TSS (NM_004548)	139	NM_004548	4716	Hs.513266	NM_004548	ENSG00000140990	NDUFB10	PDSW	"NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa"	protein-coding
chr7.106306717.-	chr7	106306717	106306718	-	0	NA	Intergenic	AluY|SINE|Alu	5083	NM_175884	168455	Hs.633903	NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
chr15.72816646.-	chr15	72816646	72816647	-	0	NA	"intron (NM_005744, intron 2 of 13)"	AluSz|SINE|Alu	-49979	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	"ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)"	protein-coding
chr16.60255814.+	chr16	60255814	60255815	+	0	NA	Intergenic	AluSc8|SINE|Alu	-466719	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr1.156448408.+	chr1	156448408	156448409	+	0	NA	"intron (NM_005920, intron 6 of 11)"	AluSp|SINE|Alu	11983	NM_001271629	4209	Hs.744524	NM_001271629	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
chr11.71702912.-	chr11	71702912	71702913	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7046	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr14.93400782.+	chr14	93400782	93400783	+	0	NA	"intron (NM_001275, intron 7 of 7)"	"intron (NM_001275, intron 7 of 7)"	11337	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
chr5.125759138.+	chr5	125759138	125759139	+	0	NA	"5' UTR (NM_023927, exon 1 of 14)"	"5' UTR (NM_023927, exon 1 of 14)"	269	NM_023927	65983	Hs.363558	NM_001146319	ENSG00000155324	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
chr7.124427295.-	chr7	124427295	124427296	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3569	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr7.74447208.-	chr7	74447208	74447209	-	0	NA	Intergenic	Intergenic	-42491	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr2.241363388.+	chr2	241363388	241363389	+	0	NA	Intergenic	Intergenic	-11727	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr8.14882319.-	chr8	14882319	14882320	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171300	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chrX.9366093.+	chrX	9366093	9366094	+	0	NA	Intergenic	AluY|SINE|Alu	-65242	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr15.76627343.-	chr15	76627343	76627344	-	0	NA	Intergenic	AluSg|SINE|Alu	1804	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr17.73152623.-	chr17	73152623	73152624	-	0	NA	Intergenic	AluY|SINE|Alu	1848	NM_016185	51155	Hs.532803	NM_001002032	ENSG00000189159	HN1	ARM2|HN1A	hematological and neurological expressed 1	protein-coding
chr7.103968789.+	chr7	103968789	103968790	+	0	NA	promoter-TSS (NM_199000)	promoter-TSS (NM_199000)	-315	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chrX.70362714.+	chrX	70362714	70362715	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-1967	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr16.11746973.-	chr16	11746973	11746974	-	0	NA	Intergenic	AluSx1|SINE|Alu	15316	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr19.9311192.-	chr19	9311192	9311193	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14355	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr8.121513313.+	chr8	121513313	121513314	+	0	NA	"intron (NM_022045, intron 14 of 21)"	AluY|SINE|Alu	-55666	NM_014078	28998	Hs.333823	NM_014078	ENSG00000172172	MRPL13	L13|L13A|L13mt|RPL13|RPML13	mitochondrial ribosomal protein L13	protein-coding
chr2.242750614.+	chr2	242750614	242750615	+	0	NA	"intron (NM_001167600, intron 1 of 3)"	"intron (NM_001167600, intron 1 of 3)"	454	NM_001167601	129807	Hs.551747	NM_001167599	ENSG00000204099	NEU4	-	sialidase 4	protein-coding
chr4.166248510.-	chr4	166248510	166248511	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	308	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr15.41674354.+	chr15	41674354	41674355	+	0	NA	Intergenic	SVA_F|Other|Other	20304	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr20.50013462.+	chr20	50013462	50013463	+	0	NA	"intron (NM_173091, intron 9 of 9)"	"intron (NM_173091, intron 9 of 9)"	56052	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	miscRNA
chrX.53123338.+	chrX	53123338	53123339	+	0	NA	Intergenic	CpG	11796	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.75367782.-	chr7	75367782	75367783	-	0	NA	"intron (NM_001243198, intron 1 of 28)"	"intron (NM_001243198, intron 1 of 28)"	-501	NM_005338	3092	Hs.619089	NM_001243198	ENSG00000127946	HIP1	ILWEQ	huntingtin interacting protein 1	protein-coding
chr8.142397030.-	chr8	142397030	142397031	-	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	19665	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr17.14204680.-	chr17	14204680	14204681	-	0	NA	"5' UTR (NM_006041, exon 1 of 2)"	"5' UTR (NM_006041, exon 1 of 2)"	-174	NM_006041	9953	Hs.48384	NM_006041		HS3ST3B1	30ST3B1|3OST3B1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding
chr6.70692583.+	chr6	70692583	70692584	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116135	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr10.13141005.-	chr10	13141005	13141006	-	0	NA	Intergenic	AluSx4|SINE|Alu	1077	NM_001008212	10133	Hs.332706	NM_001008211	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
chr19.9311325.-	chr19	9311325	9311326	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14222	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr17.4435103.-	chr17	4435103	4435104	-	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	-23578	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr20.45571689.+	chr20	45571689	45571690	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48426	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr6.8388435.+	chr6	8388435	8388436	+	0	NA	Intergenic	LTR9|LTR|ERV1	47359	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr8.128328694.-	chr8	128328694	128328695	-	0	NA	Intergenic	Intergenic	99163	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr6.110639613.-	chr6	110639613	110639614	-	0	NA	"intron (NM_001123364, intron 2 of 4)"	AluSx|SINE|Alu	-39862	NM_001123364	728464	Hs.722171	NM_001123364	ENSG00000053328	METTL24	C6orf186|dJ71D21.2	methyltransferase like 24	protein-coding
chr17.57884689.-	chr17	57884689	57884690	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33938	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr17.75209480.+	chr17	75209480	75209481	+	0	NA	"exon (NM_001143998, exon 16 of 17)"	"exon (NM_001143998, exon 16 of 17)"	28185	NM_001144001	6397	Hs.464184	NM_001039573	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
chr14.83280576.-	chr14	83280576	83280577	-	0	NA	Intergenic	SVA_D|Other|Other	1280371	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr10.73848203.+	chr10	73848203	73848204	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	328	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr19.50926573.+	chr19	50926573	50926574	+	0	NA	"intron (NM_001244000, intron 4 of 5)"	"intron (NM_001244000, intron 4 of 5)"	4378	NM_001243998	6689	Hs.437905	NM_001243998	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding
chr16.53227230.+	chr16	53227230	53227231	+	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	138285	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr9.139071862.+	chr9	139071862	139071863	+	0	NA	Intergenic	Intergenic	23142	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr8.60674687.+	chr8	60674687	60674688	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519267	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr13.112573669.+	chr13	112573669	112573670	+	0	NA	Intergenic	Intergenic	-148244	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr11.129244452.-	chr11	129244452	129244453	-	0	NA	Intergenic	CpG	1429	NM_003658	8538	Hs.591944	NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
chr3.71746100.+	chr3	71746100	71746101	+	0	NA	"intron (NM_001134650, intron 4 of 7)"	AluY|SINE|Alu	28426	NM_001134651	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr17.16010341.-	chr17	16010341	16010342	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87612	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr15.91370862.-	chr15	91370862	91370863	-	0	NA	Intergenic	AluSz|SINE|Alu	41023	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr6.42510203.-	chr6	42510203	42510204	-	0	NA	Intergenic	AluY|SINE|Alu	21557	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr14.105242461.+	chr14	105242461	105242462	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17477	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr14.102954971.+	chr14	102954971	102954972	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21157	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr5.78889998.-	chr5	78889998	78889999	-	0	NA	Intergenic	AluSc|SINE|Alu	18245	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr20.18441239.-	chr20	18441239	18441240	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6590	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr8.61460289.-	chr8	61460289	61460290	-	0	NA	"intron (NM_001242644, intron 1 of 6)"	SVA_D|Other|Other	-30820	NM_001242644	5862	Hs.369017	NM_001242644	ENSG00000104388	RAB2A	LHX|RAB2	"RAB2A, member RAS oncogene family"	protein-coding
chr15.64686570.-	chr15	64686570	64686571	-	0	NA	"intron (NM_016213, intron 2 of 12)"	AluY|SINE|Alu	-6567	NM_016213	9325	Hs.500340	NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391	thyroid hormone receptor interactor 4	protein-coding
chr17.72830119.-	chr17	72830119	72830120	-	0	NA	"intron (NM_017728, intron 9 of 9)"	"intron (NM_017728, intron 9 of 9)"	-25888	NM_000835	2905	Hs.436980	NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	"glutamate receptor, ionotropic, N-methyl D-aspartate 2C"	protein-coding
chr17.57868973.+	chr17	57868973	57868974	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49654	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr1.16345335.-	chr1	16345335	16345336	-	0	NA	promoter-TSS (NM_014424)	promoter-TSS (NM_014424)	50	NM_014424	27129	Hs.502612	NM_014424	ENSG00000173641	HSPB7	cvHSP	"heat shock 27kDa protein family, member 7 (cardiovascular)"	protein-coding
chr13.110964308.+	chr13	110964308	110964309	+	0	NA	"intron (NM_001846, intron 3 of 47)"	"intron (NM_001846, intron 3 of 47)"	4677	NM_001846	1284	Hs.508716	NM_001846	ENSG00000134871	COL4A2	ICH|POREN2	"collagen, type IV, alpha 2"	protein-coding
chr2.1590775.+	chr2	1590775	1590776	+	0	NA	Intergenic	Intergenic	157516	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr1.7952809.-	chr1	7952809	7952810	-	0	NA	Intergenic	AluSx1|SINE|Alu	39258	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr19.3457803.-	chr19	3457803	3457804	-	0	NA	"intron (NM_001245005, intron 9 of 9)"	"intron (NM_001245005, intron 9 of 9)"	-22737	NM_001136503	284422	Hs.130714	NM_001136503	ENSG00000095932	C19orf77	-	chromosome 19 open reading frame 77	protein-coding
chr5.3188284.+	chr5	3188284	3188285	+	0	NA	Intergenic	CpG	347924	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr18.77717824.+	chr18	77717824	77717825	+	0	NA	Intergenic	AluY|SINE|Alu	-6171	NM_001146343	80148	Hs.288284	NM_001146343	ENSG00000122490	PQLC1	-	PQ loop repeat containing 1	protein-coding
chr22.18652453.+	chr22	18652453	18652454	+	0	NA	"intron (NM_017414, intron 6 of 10)"	MSTA|LTR|ERVL-MaLR	19695	NM_017414	11274	Hs.38260	NM_017414	ENSG00000184979	USP18	ISG43|UBP43	ubiquitin specific peptidase 18	protein-coding
chrX.53165831.+	chrX	53165831	53165832	+	0	NA	Intergenic	AluJo|SINE|Alu	54289	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr4.113704350.+	chr4	113704350	113704351	+	0	NA	Intergenic	AluSg|SINE|Alu	-34889	NM_001127493	287	Hs.620557	NM_001127493	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	"ankyrin 2, neuronal"	protein-coding
chr7.5334597.-	chr7	5334597	5334598	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12036	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr6.163752527.-	chr6	163752527	163752528	-	0	NA	Intergenic	Intergenic	7022	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chrX.39680362.-	chrX	39680362	39680363	-	0	NA	Intergenic	CpG	-276357	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr15.84075914.+	chr15	84075914	84075915	+	0	NA	Intergenic	AluY|SINE|Alu	-40177	NM_003027	6457	Hs.666365	NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-2B-L3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3-domain GRB2-like 3	protein-coding
chr14.23706384.-	chr14	23706384	23706385	-	0	NA	Intergenic	AluSz|SINE|Alu	-48925	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr6.158700261.+	chr6	158700261	158700262	+	0	NA	Intergenic	AluY|SINE|Alu	-33431	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr1.40052633.+	chr1	40052633	40052634	+	0	NA	Intergenic	AluSq|SINE|Alu	-10112	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr5.22207076.-	chr5	22207076	22207077	-	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	-64615	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr5.89746533.+	chr5	89746533	89746534	+	0	NA	Intergenic	AluSz|SINE|Alu	24052	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr12.112407442.+	chr12	112407442	112407443	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43581	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr19.11043336.-	chr19	11043336	11043337	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3912	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr2.134877813.-	chr2	134877813	134877814	-	0	NA	Intergenic	CpG	6883	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	-	microRNA 3679	miscRNA
chr7.3340589.-	chr7	3340589	3340590	-	0	NA	promoter-TSS (NM_152744)	promoter-TSS (NM_152744)	491	NM_152744	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr16.70356410.+	chr16	70356410	70356411	+	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	23348	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr1.161879485.+	chr1	161879485	161879486	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114159	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr16.71414325.+	chr16	71414325	71414326	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21709	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr6.88932907.+	chr6	88932907	88932908	+	0	NA	Intergenic	AluY|SINE|Alu	-57140	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chr6.141000367.-	chr6	141000367	141000368	-	0	NA	Intergenic	AluY|SINE|Alu	4584	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr2.4156360.-	chr2	4156360	4156361	-	0	NA	Intergenic	CpG	134738	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr10.135192272.+	chr10	135192272	135192273	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-469	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chrX.54371330.-	chrX	54371330	54371331	-	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	-13108	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr1.224419921.+	chr1	224419921	224419922	+	0	NA	"intron (NM_001243146, intron 19 of 20)"	AluY|SINE|Alu	24922	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2	microRNA 320b-2	miscRNA
chr7.95181981.-	chr7	95181981	95181982	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-43944	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr7.25609195.-	chr7	25609195	25609196	-	0	NA	Intergenic	AluSz|SINE|Alu	-271435	NR_046486	100873753		NR_046486		RNU6-16	-	"RNA, U6 small nuclear 16"	snRNA
chr11.86934364.+	chr11	86934364	86934365	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	185478	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr2.204121183.+	chr2	204121183	204121184	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18019	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr16.29422135.+	chr16	29422135	29422136	+	0	NA	Intergenic	AluSx|SINE|Alu	-38531	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr1.247910824.+	chr1	247910824	247910825	+	0	NA	Intergenic	AluY|SINE|Alu	10884	NM_012353	26188	Hs.381306	NM_012353		OR1C1	HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27	"olfactory receptor, family 1, subfamily C, member 1"	protein-coding
chr10.133869143.-	chr10	133869143	133869144	-	0	NA	Intergenic	Intergenic	49170	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr1.70033248.+	chr1	70033248	70033249	+	0	NA	Intergenic	CpG	-192610	NM_020794	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
chr2.87723298.+	chr2	87723298	87723299	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-31676	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr17.79478579.-	chr17	79478579	79478580	-	0	NA	"exon (NM_001199954, exon 4 of 6)"	"exon (NM_001199954, exon 4 of 6)"	-1313	NR_037688	71	Hs.706229	NM_001199954	ENSG00000184009	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26	"actin, gamma 1"	protein-coding
chr20.33882207.+	chr20	33882207	33882208	+	0	NA	Intergenic	Intergenic	-1982	NM_178468	128876	Hs.592149	NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	"family with sequence similarity 83, member C"	protein-coding
chr17.28675264.-	chr17	28675264	28675265	-	0	NA	Intergenic	AluY|SINE|Alu	14199	NM_206832	388364	Hs.371005	NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
chr15.65796574.+	chr15	65796574	65796575	+	0	NA	"intron (NM_017743, intron 3 of 17)"	AluSp|SINE|Alu	13035	NM_197960	54878	Hs.591106	NM_017743		DPP8	DP8|DPRP1|MSTP141	dipeptidyl-peptidase 8	protein-coding
chr22.24621451.+	chr22	24621451	24621452	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19659	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr3.36421954.-	chr3	36421954	36421955	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	143	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr17.80431698.-	chr17	80431698	80431699	-	0	NA	"intron (NM_012336, intron 5 of 10)"	AluSz|SINE|Alu	-15158	NM_001083608	26502	Hs.600304	NM_001038618	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
chr7.179709.+	chr7	179709	179710	+	0	NA	Intergenic	L2b|LINE|L2	-13260	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	"family with sequence similarity 20, member C"	protein-coding
chr12.114007237.+	chr12	114007237	114007238	+	0	NA	Intergenic	AluSz|SINE|Alu	-97360	NM_022363	64211	Hs.302029	NM_022363		LHX5	-	LIM homeobox 5	protein-coding
chr7.72991460.+	chr7	72991460	72991461	+	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	1553	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr11.125040449.+	chr11	125040449	125040450	+	0	NA	"intron (NM_022062, intron 1 of 12)"	"intron (NM_022062, intron 1 of 12)"	5890	NM_022062	63876	Hs.278564	NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
chr17.74616083.+	chr17	74616083	74616084	+	0	NA	Intergenic	AluSx|SINE|Alu	23811	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr5.133968962.+	chr5	133968962	133968963	+	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	-429	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr5.1883528.-	chr5	1883528	1883529	-	0	NA	promoter-TSS (NM_016358)	promoter-TSS (NM_016358)	648	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr2.43254070.+	chr2	43254070	43254071	+	0	NA	Intergenic	Intergenic	199675	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chrX.69654663.-	chrX	69654663	69654664	-	0	NA	Intergenic	Intergenic	10042	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr2.10952776.-	chr2	10952776	10952777	-	0	NA	"intron (NM_005742, intron 1 of 12)"	CpG	-184	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr6.132823905.+	chr6	132823905	132823906	+	0	NA	"intron (NM_003569, intron 2 of 9)"	AluY|SINE|Alu	10432	NM_003569	8417	Hs.605992	NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
chr1.38512488.+	chr1	38512488	38512489	+	0	NA	promoter-TSS (NM_002699)	promoter-TSS (NM_002699)	-38	NM_002699	5453	Hs.1837	NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
chr13.21644931.-	chr13	21644931	21644932	-	0	NA	Intergenic	AluSx|SINE|Alu	9209	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr18.29729803.-	chr18	29729803	29729804	-	0	NA	Intergenic	AluSp|SINE|Alu	40184	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr3.31533165.+	chr3	31533165	31533166	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41326	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr1.914567.+	chr1	914567	914568	+	0	NA	"non-coding (NR_027693, exon 3 of 5)"	"non-coding (NR_027693, exon 3 of 5)"	2906	NR_027693	84808	Hs.271462	NM_032722	ENSG00000187642	C1orf170	RP11-54O7.8	chromosome 1 open reading frame 170	miscRNA
chr8.67618011.-	chr8	67618011	67618012	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6642	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr22.50655109.+	chr22	50655109	50655110	+	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	15701	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr12.133328259.-	chr12	133328259	133328260	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10192	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr20.57575063.-	chr20	57575063	57575064	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7246	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr7.54614247.+	chr7	54614247	54614248	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4228	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr10.42644591.-	chr10	42644591	42644592	-	0	NA	Intergenic	Intergenic	-218902	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr13.28037113.-	chr13	28037113	28037114	-	0	NA	Intergenic	AluY|SINE|Alu	12374	NM_152912	219402	Hs.534582	NM_001166261	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
chr6.3456704.-	chr6	3456704	3456705	-	0	NA	promoter-TSS (NM_015482)	promoter-TSS (NM_015482)	-89	NM_015482	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	"solute carrier family 22, member 23"	protein-coding
chr7.29371056.+	chr7	29371056	29371057	+	0	NA	"intron (NM_004067, intron 1 of 12)"	LTR33|LTR|ERVL	136935	NM_004067	1124	Hs.710429	NM_001039936	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
chr22.51001331.+	chr22	51001331	51001332	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-3	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr14.102577004.+	chr14	102577004	102577005	+	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	-23492	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr3.196325431.-	chr3	196325431	196325432	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-29706	NM_001105573	200933	Hs.169815	NM_001105573	ENSG00000174013	FBXO45	Fbx45	F-box protein 45	protein-coding
chr1.156030260.-	chr1	156030260	156030261	-	0	NA	promoter-TSS (NM_020387)	promoter-TSS (NM_020387)	706	NM_020387	57111	Hs.632469	NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	"RAB25, member RAS oncogene family"	protein-coding
chr21.32687762.+	chr21	32687762	32687763	+	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	243528	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr19.17585782.-	chr19	17585782	17585783	-	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	-4482	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr16.87903527.+	chr16	87903527	87903528	+	0	NA	promoter-TSS (NM_003486)	promoter-TSS (NM_003486)	-427	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr7.95234890.+	chr7	95234890	95234891	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8965	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr2.184300357.+	chr2	184300357	184300358	+	0	NA	Intergenic	AluY|SINE|Alu	311274	NM_138285	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP44|NP44|NUP53	nucleoporin 35kDa	protein-coding
chr5.693740.-	chr5	693740	693741	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	230	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr9.90885108.+	chr9	90885108	90885109	+	0	NA	Intergenic	AluJb|SINE|Alu	-118189	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr17.21904269.+	chr17	21904269	21904270	+	0	NA	"intron (NR_027084, intron 1 of 1)"	SST1|Satellite|centr	207	NR_027084	284124	Hs.310247	NR_027084		FLJ36000	-	uncharacterized FLJ36000	miscRNA
chr16.19394764.-	chr16	19394764	19394765	-	0	NA	Intergenic	Intergenic	27293	NM_001105249	79838	Hs.115838	NM_001105248	ENSG00000103534	TMC5	-	transmembrane channel-like 5	protein-coding
chr9.11197019.+	chr9	11197019	11197020	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584296	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr4.1358119.+	chr4	1358119	1358120	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	17015	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr17.22012645.-	chr17	22012645	22012646	-	0	NA	Intergenic	Intergenic	9792	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr14.21560439.-	chr14	21560439	21560440	-	0	NA	"exon (NM_001102454, exon 3 of 5)"	"exon (NM_001102454, exon 3 of 5)"	-6369	NM_016423	51222	Hs.250493	NM_001101672	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
chr9.138012261.+	chr9	138012261	138012262	+	0	NA	"3' UTR (NM_014279, exon 6 of 6)"	"3' UTR (NM_014279, exon 6 of 6)"	45158	NM_006334	10439	Hs.522484	NM_006334	ENSG00000130558	OLFM1	AMY|NOE1|NOELIN1|OlfA	olfactomedin 1	protein-coding
chr16.1845354.+	chr16	1845354	1845355	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-445	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr5.176730615.+	chr5	176730615	176730616	+	0	NA	promoter-TSS (NM_013237)	promoter-TSS (NM_013237)	129	NM_001031677	53917	Hs.16258	NM_001031677	ENSG00000169228	RAB24	-	"RAB24, member RAS oncogene family"	protein-coding
chr1.212898497.+	chr1	212898497	212898498	+	0	NA	TTS (NM_001042549)	TTS (NM_001042549)	-25170	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr9.108210400.-	chr9	108210400	108210401	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-75	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr12.95431409.+	chr12	95431409	95431410	+	0	NA	"intron (NM_003297, intron 10 of 13)"	AluY|SINE|Alu	-33920	NM_001258338	55967	Hs.506374	NM_001258338	ENSG00000184752	NDUFA12	B17.2|DAP13	"NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12"	protein-coding
chr10.44198450.+	chr10	44198450	44198451	+	0	NA	Intergenic	CpG	-54124	NM_006973	7580	Hs.522885	NM_001005368	ENSG00000169740	ZNF32	KOX30	zinc finger protein 32	protein-coding
chr14.93153457.+	chr14	93153457	93153458	+	0	NA	"intron (NM_024832, intron 9 of 9)"	CpG	61590	NM_001008530	5641	Hs.18069	NM_001008530	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
chr4.1006062.-	chr4	1006062	1006063	-	0	NA	promoter-TSS (NM_021923)	promoter-TSS (NM_021923)	190	NM_021923	53834	Hs.193326	NM_001004356	ENSG00000127418	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
chr1.197418643.-	chr1	197418643	197418644	-	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	-181309	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr19.22288014.+	chr19	22288014	22288015	+	0	NA	Intergenic	SVA_C|Other|Other	52748	NM_033468	113835	Hs.283900	NM_033468	ENSG00000197134	ZNF257	BMZF-4|BMZF4	zinc finger protein 257	protein-coding
chr2.19132828.+	chr2	19132828	19132829	+	0	NA	Intergenic	AluYk4|SINE|Alu	-361982	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr21.32687768.-	chr21	32687768	32687769	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243522	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr19.1871371.+	chr19	1871371	1871372	+	0	NA	Intergenic	Intergenic	-7807	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr9.121440491.-	chr9	121440491	121440492	-	0	NA	Intergenic	SVA_B|Other|Other	-691248	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr20.19739395.+	chr20	19739395	19739396	+	0	NA	Intergenic	CpG	-127770	NM_001242581	54453	Hs.472270	NM_001242581	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
chr1.151742020.-	chr1	151742020	151742021	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2889	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr9.116102459.-	chr9	116102459	116102460	-	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	-161	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr22.50655073.-	chr22	50655073	50655074	-	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	-15665	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr12.131551491.+	chr12	131551491	131551492	+	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	-98065	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr22.49447898.+	chr22	49447898	49447899	+	0	NA	Intergenic	CpG	185316	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr12.53373511.-	chr12	53373511	53373512	-	0	NA	Intergenic	AluSx1|SINE|Alu	26551	NM_001417	1975	Hs.702041	NM_018507	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
chr16.9185046.-	chr16	9185046	9185047	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	491	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr9.139091826.+	chr9	139091826	139091827	+	0	NA	"intron (NM_014564, intron 2 of 5)"	CpG-27326	3178	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr14.23233417.+	chr14	23233417	23233418	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2314	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr7.156750256.+	chr7	156750256	156750257	+	0	NA	"intron (NM_138400, intron 3 of 10)"	AluY|SINE|Alu	7839	NM_138400	64434	Hs.15825	NM_138400	ENSG00000146909	NOM1	C7orf3|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
chrX.88129149.-	chrX	88129149	88129150	-	0	NA	Intergenic	AluY|SINE|Alu	-126923	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr1.242178324.+	chr1	242178324	242178325	+	0	NA	Intergenic	AluY|SINE|Alu	-15939	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr19.48260011.-	chr19	48260011	48260012	-	0	NA	TTS (NR_003048)	TTS (NR_003048)	-901	NR_003048	692091	Hs.421907	NR_003048		SNORD23	HBII-115	"small nucleolar RNA, C/D box 23"	snoRNA
chr17.8166399.-	chr17	8166399	8166400	-	0	NA	"intron (NM_012393, intron 12 of 27)"	"intron (NM_012393, intron 12 of 27)"	-13803	NM_012393	5198	Hs.573976	NM_012393	ENSG00000178921	PFAS	FGAMS|FGARAT|PURL	phosphoribosylformylglycinamidine synthase	protein-coding
chr10.6985592.-	chr10	6985592	6985593	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164032	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chrX.49682932.+	chrX	49682932	49682933	+	0	NA	Intergenic	AluSz|SINE|Alu	-4293	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chrX.11749467.-	chrX	11749467	11749468	-	0	NA	Intergenic	AluSx|SINE|Alu	26811	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr1.218165419.-	chr1	218165419	218165420	-	0	NA	Intergenic	AluSq|SINE|Alu	-99177	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr3.49479568.+	chr3	49479568	49479569	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12811	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr9.133430109.+	chr9	133430109	133430110	+	0	NA	Intergenic	Intergenic	24772	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr17.47811680.+	chr17	47811680	47811681	+	0	NA	"intron (NM_030802, intron 1 of 7)"	AluYk4|SINE|Alu	-26398	NM_005827	10237	Hs.154073	NM_005827		SLC35B1	UGTREL1	"solute carrier family 35, member B1"	protein-coding
chr13.45131276.+	chr13	45131276	45131277	+	0	NA	"intron (NM_183422, intron 1 of 2)"	AluSp|SINE|Alu	-18756	NR_038381	641467	Hs.624196	NR_038381		TSC22D1-AS1	-	TSC22D1 antisense RNA 1	miscRNA
chr1.142618961.-	chr1	142618961	142618962	-	0	NA	Intergenic	CpG	-94644	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	"ankyrin repeat domain 20 family, member A12, pseudogene"	pseudo
chr6.2221716.+	chr6	2221716	2221717	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24152	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr7.5355901.-	chr7	5355901	5355902	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33340	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr1.180202748.+	chr1	180202748	180202749	+	0	NA	"intron (NM_033343, intron 1 of 5)"	CpG-1965	3315	NM_033343	89884	Hs.658487	NM_033343		LHX4	CPHD4	LIM homeobox 4	protein-coding
chr15.83365811.+	chr15	83365811	83365812	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12824	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chrX.99100678.-	chrX	99100678	99100679	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94163	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chrX.88129151.+	chrX	88129151	88129152	+	0	NA	Intergenic	AluY|SINE|Alu	126925	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr19.11060496.-	chr19	11060496	11060497	-	0	NA	Intergenic	AluY|SINE|Alu	11102	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr7.5014635.-	chr7	5014635	5014636	-	0	NA	"intron (NR_023384, intron 1 of 7)"	AluY|SINE|Alu	-1019	NR_023385	441191	Hs.520636	NR_015449	ENSG00000196204	RNF216P1	RNF216L|hCG2040556	ring finger protein 216 pseudogene 1	pseudo
chr6.66681601.-	chr6	66681601	66681602	-	0	NA	Intergenic	L1PA3|LINE|L1	-183829	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	"solute carrier family 25, member 51 pseudogene 1"	pseudo
chr4.72877016.-	chr4	72877016	72877017	-	0	NA	Intergenic	AluY|SINE|Alu	20505	NM_004885	10886	Hs.99231	NM_001144756	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
chr12.110610505.-	chr12	110610505	110610506	-	0	NA	"intron (NM_001143779, intron 11 of 18)"	SVA_D|Other|Other	-48365	NM_031473	28981	Hs.528382	NM_001143779	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R	intraflagellar transport 81 homolog (Chlamydomonas)	protein-coding
chr4.93787986.+	chr4	93787986	93787987	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562436	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr12.57177809.+	chr12	57177809	57177810	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20701	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr1.41249310.-	chr1	41249310	41249311	-	0	NA	promoter-TSS (NM_172163)	promoter-TSS (NM_172163)	374	NM_172163	9132	Hs.473058	XM_003960106	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	"potassium voltage-gated channel, KQT-like subfamily, member 4"	protein-coding
chr16.75369614.-	chr16	75369614	75369615	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluY|SINE|Alu	67663	NM_001170715	9564	Hs.479747	NM_001170714	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
chr13.114523154.-	chr13	114523154	114523155	-	0	NA	TTS (NM_000820)	TTS (NM_000820)	-4571	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	miscRNA
chr12.111714719.-	chr12	111714719	111714720	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92206	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr11.2929624.-	chr11	2929624	2929625	-	0	NA	"intron (NM_002555, intron 3 of 10)"	"intron (NM_002555, intron 3 of 10)"	4449	NM_007105	5003	Hs.300076	NM_007105		SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	"solute carrier family 22 (organic cation transporter), member 18 antisense"	protein-coding
chr5.176075311.-	chr5	176075311	176075312	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-923	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr3.73614885.+	chr3	73614885	73614886	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59187	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr4.185174117.-	chr4	185174117	185174118	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35003	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr7.45775921.+	chr7	45775921	45775922	+	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	32696	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr10.12405385.-	chr10	12405385	12405386	-	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	-13802	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chrX.53123429.-	chrX	53123429	53123430	-	0	NA	Intergenic	CpG	-11887	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr4.5892135.-	chr4	5892135	5892136	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1820	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr17.6454533.+	chr17	6454533	6454534	+	0	NA	"intron (NM_001165966, intron 1 of 18)"	AluY|SINE|Alu	5344	NM_001165966	83394	Hs.183983	NM_001165966	ENSG00000091622	PITPNM3	CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
chr10.35559798.+	chr10	35559798	35559799	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23845	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr3.102973885.+	chr3	102973885	102973886	+	0	NA	Intergenic	SVA_D|Other|Other	820026	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr6.17739795.-	chr6	17739795	17739796	-	0	NA	Intergenic	L1M2a|LINE|L1	32977	NM_005124	9972	Hs.718703	NM_005124	ENSG00000124789	NUP153	HNUP153|N153	nucleoporin 153kDa	protein-coding
chr8.57359101.-	chr8	57359101	57359102	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-181	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr17.45055884.-	chr17	45055884	45055885	-	0	NA	"3' UTR (NM_203400, exon 1 of 1)"	"3' UTR (NM_203400, exon 1 of 1)"	-730	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr17.20588554.-	chr17	20588554	20588555	-	0	NA	Intergenic	SVA_D|Other|Other	27205	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr20.32251222.+	chr20	32251222	32251223	+	0	NA	"intron (NM_080825, intron 1 of 1)"	CpG	1130	NM_080825	128864	Hs.324104	NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
chr4.103422426.-	chr4	103422426	103422427	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	60	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr7.2050714.+	chr7	2050714	2050715	+	0	NA	"intron (NM_001013836, intron 13 of 18)"	"intron (NM_001013836, intron 13 of 18)"	-166825	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr3.164119696.-	chr3	164119696	164119697	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676587	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr19.13921554.+	chr19	13921554	13921555	+	0	NA	"intron (NM_023072, intron 5 of 12)"	AluY|SINE|Alu	15280	NM_023072	65249	Hs.466015	NM_023072	ENSG00000132003	ZSWIM4	-	"zinc finger, SWIM-type containing 4"	protein-coding
chr12.118079877.-	chr12	118079877	118079878	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280270	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr3.38106435.+	chr3	38106435	38106436	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25739	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr3.185541175.-	chr3	185541175	185541176	-	0	NA	"intron (NM_006548, intron 1 of 15)"	CpG	-1652	NM_006548	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr1.114299632.-	chr1	114299632	114299633	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2145	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr19.47548594.-	chr19	47548594	47548595	-	0	NA	TTS (NM_017854)	TTS (NM_017854)	-3288	NM_017854	54958	Hs.105606	NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
chr13.114877934.+	chr13	114877934	114877935	+	0	NA	"intron (NM_007368, intron 1 of 23)"	"intron (NM_007368, intron 1 of 23)"	20161	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.136760848.-	chr2	136760848	136760849	-	0	NA	Intergenic	AluSq2|SINE|Alu	17626	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr7.158670986.-	chr7	158670986	158670987	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21717	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr10.71044930.-	chr10	71044930	71044931	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15174	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr2.198058465.-	chr2	198058465	198058466	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117056	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr16.87799860.+	chr16	87799860	87799861	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-262	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr22.45405414.+	chr22	45405414	45405415	+	0	NA	promoter-TSS (NM_001242450)	promoter-TSS (NM_001242450)	167	NM_138415	112885	Hs.254097	NM_001135862	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
chr16.30960869.-	chr16	30960869	30960870	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-464	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chrX.137770393.-	chrX	137770393	137770394	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20439	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr5.1201350.+	chr5	1201350	1201351	+	0	NA	promoter-TSS (NM_001003841)	promoter-TSS (NM_001003841)	-360	NM_001003841	340024	Hs.481478	NM_001003841	ENSG00000174358	SLC6A19	B0AT1|HND	"solute carrier family 6 (neutral amino acid transporter), member 19"	protein-coding
chr6.45365129.+	chr6	45365129	45365130	+	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	-19341	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr9.16766074.+	chr9	16766074	16766075	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	104712	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr2.175200724.-	chr2	175200724	175200725	-	0	NA	"intron (NM_001145250, intron 1 of 1)"	CpG	-903	NM_001145250	100131390	Hs.516603	NM_001145250		SP9	ZNF990	Sp9 transcription factor	protein-coding
chr8.27141307.+	chr8	27141307	27141308	+	0	NA	Intergenic	Intergenic	-25404	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr15.66084277.+	chr15	66084277	66084278	+	0	NA	"intron (NM_005848, intron 1 of 31)"	CpG	354	NM_005848	10260	Hs.654567	NM_001144823	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN/MADD domain containing 4A	protein-coding
chr8.67618016.+	chr8	67618016	67618017	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6637	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr16.46387492.-	chr16	46387492	46387493	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215517	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr16.78269423.+	chr16	78269423	78269424	+	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	136096	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chrX.68956220.+	chrX	68956220	68956221	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120309	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr15.84075923.+	chr15	84075923	84075924	+	0	NA	Intergenic	AluY|SINE|Alu	-40168	NM_003027	6457	Hs.666365	NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-2B-L3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3-domain GRB2-like 3	protein-coding
chr1.226350807.+	chr1	226350807	226350808	+	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	23616	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr3.46709762.+	chr3	46709762	46709763	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9137	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr22.37641446.-	chr22	37641446	37641447	-	0	NA	Intergenic	Intergenic	1141	NM_002872	5880	Hs.517601	NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022	"ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)"	protein-coding
chr18.2377837.+	chr18	2377837	2377838	+	0	NA	Intergenic	AluSg7|SINE|Alu	193652	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr11.44361719.+	chr11	44361719	44361720	+	0	NA	Intergenic	AluJb|SINE|Alu	-30003	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr2.218926987.+	chr2	218926987	218926988	+	0	NA	promoter-TSS (NR_002712)	promoter-TSS (NR_002712)	-974	NR_002712	3580	Hs.647858	NR_002712		CXCR2P1	CXCR2P|IL8RBP	chemokine (C-X-C motif) receptor 2 pseudogene 1	pseudo
chr7.5526751.+	chr7	5526751	5526752	+	0	NA	"intron (NM_024963, intron 4 of 4)"	"intron (NM_024963, intron 4 of 4)"	8797	NR_030318	693174		NR_030318		MIR589	MIRN589|hsa-mir-589	microRNA 589	miscRNA
chr7.139162654.+	chr7	139162654	139162655	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5803	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr2.242143613.+	chr2	242143613	242143614	+	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	15689	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr16.75032894.+	chr16	75032894	75032895	+	0	NA	promoter-TSS (NM_032268)	promoter-TSS (NM_032268)	-21	NM_032268	84937	Hs.427284	NM_032268	ENSG00000186187	ZNRF1	NIN283	"zinc and ring finger 1, E3 ubiquitin protein ligase"	protein-coding
chr13.24099548.-	chr13	24099548	24099549	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	44961	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chrX.132930120.+	chrX	132930120	132930121	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189553	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr12.56394759.-	chr12	56394759	56394760	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3716	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr2.101245799.+	chr2	101245799	101245800	+	0	NA	Intergenic	Intergenic	66381	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr17.19890173.-	chr17	19890173	19890174	-	0	NA	Intergenic	AluY|SINE|Alu	9004	NM_007202	11216	Hs.642676	NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding
chr2.239058275.-	chr2	239058275	239058276	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10912	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr12.131551500.+	chr12	131551500	131551501	+	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	-98056	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr4.126736828.-	chr4	126736828	126736829	-	0	NA	Intergenic	AluY|SINE|Alu	-308414	NR_031746	100302267		NR_031746		MIR2054	hsa-mir-2054	microRNA 2054	miscRNA
chr8.141030048.+	chr8	141030048	141030049	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314749	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr22.24237318.-	chr22	24237318	24237319	-	0	NA	TTS (NM_002415)	TTS (NM_002415)	-753	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr14.21094290.-	chr14	21094290	21094291	-	0	NA	Intergenic	AluSc|SINE|Alu	-15560	NM_001001968	341799	Hs.513132	NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	"olfactory receptor, family 6, subfamily S, member 1"	protein-coding
chr1.5762918.+	chr1	5762918	5762919	+	0	NA	Intergenic	AluSp|SINE|Alu	138787	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	miscRNA
chrX.38555453.+	chrX	38555453	38555454	+	0	NA	Intergenic	AluSg4|SINE|Alu	-105232	NM_001098791	58526	Hs.522605	NM_001098790	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
chr3.8721295.-	chr3	8721295	8721296	-	0	NA	Intergenic	Intergenic	27531	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chrX.122993635.-	chrX	122993635	122993636	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	27	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr1.113336828.+	chr1	113336828	113336829	+	0	NA	Intergenic	MER70B|LTR|ERVL	73639	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr15.41613164.-	chr15	41613164	41613165	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11655	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr5.37382633.+	chr5	37382633	37382634	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3221	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr18.30352051.+	chr18	30352051	30352052	+	0	NA	"intron (NM_020805, intron 1 of 8)"	CpG	923	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch-like family member 14	protein-coding
chr21.47838723.+	chr21	47838723	47838724	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40139	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr14.74490356.+	chr14	74490356	74490357	+	0	NA	"intron (NM_025057, intron 2 of 11)"	AluSx3|SINE|Alu	4297	NM_025057	80127	Hs.644621	NM_025057	ENSG00000119636	CCDC176	C14orf45	coiled-coil domain containing 176	protein-coding
chr7.91257052.-	chr7	91257052	91257053	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252964	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr20.59796198.+	chr20	59796198	59796199	+	0	NA	Intergenic	Intergenic	-31284	NM_001794	1002	Hs.473231	NM_001252338		CDH4	CAD4|RCAD	"cadherin 4, type 1, R-cadherin (retinal)"	protein-coding
chr20.14910714.+	chr20	14910714	14910715	+	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	-553	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr6.46742371.-	chr6	46742371	46742372	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18723	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr1.88061699.+	chr1	88061699	88061700	+	0	NA	Intergenic	AluY|SINE|Alu	-224361	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LOC100505768	-	uncharacterized LOC100505768	miscRNA
chr2.4156385.+	chr2	4156385	4156386	+	0	NA	Intergenic	CpG	-134763	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr1.61398339.-	chr1	61398339	61398340	-	0	NA	Intergenic	AluY|SINE|Alu	144607	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr7.32427446.-	chr7	32427446	32427447	-	0	NA	Intergenic	SVA_E|Other|Other	-70660	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
chr13.49426624.+	chr13	49426624	49426625	+	0	NA	Intergenic	AluSp|SINE|Alu	-123424	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr2.206814233.-	chr2	206814233	206814234	-	0	NA	Intergenic	AluSx3|SINE|Alu	-136673	NM_017759	54891	Hs.445036	NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
chr18.19630076.+	chr18	19630076	19630077	+	0	NA	Intergenic	AluY|SINE|Alu	-119328	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr4.146402766.-	chr4	146402766	146402767	-	0	NA	promoter-TSS (NM_005900)	promoter-TSS (NM_005900)	185	NM_005900	4086	Hs.604588	NM_001003688		SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
chr8.141467292.+	chr8	141467292	141467293	+	0	NA	"intron (NM_031466, intron 1 of 22)"	CpG	569	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr2.101924995.-	chr2	101924995	101924996	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-183	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr2.55647032.+	chr2	55647032	55647033	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	25	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr6.160985673.+	chr6	160985673	160985674	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53517	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr17.74707070.-	chr17	74707070	74707071	-	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	14	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chrX.53111581.+	chrX	53111581	53111582	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	39	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.139622950.+	chr9	139622950	139622951	+	0	NA	promoter-TSS (NR_024542)	promoter-TSS (NR_024542)	-314	NR_003672	84973	Hs.495480	NR_003672	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7 (non-protein coding)	miscRNA
chr19.3190796.+	chr19	3190796	3190797	+	0	NA	"intron (NM_020170, intron 1 of 14)"	"intron (NM_020170, intron 1 of 14)"	4921	NM_020170	56926	Hs.657032	NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
chr9.36596647.-	chr9	36596647	36596648	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23788	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr2.131551994.+	chr2	131551994	131551995	+	0	NA	Intergenic	AluY|SINE|Alu	38130	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr13.81676521.-	chr13	81676521	81676522	-	0	NA	Intergenic	SVA_D|Other|Other	761435	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr5.175665274.-	chr5	175665274	175665275	-	0	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	96	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr1.228745600.-	chr1	228745600	228745601	-	0	NA	Intergenic	CpG	34794	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr9.7934820.+	chr9	7934820	7934821	+	0	NA	Intergenic	AluY|SINE|Alu	-135021	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr1.108113219.-	chr1	108113219	108113220	-	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	-117907	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr2.29662832.+	chr2	29662832	29662833	+	0	NA	"intron (NM_004304, intron 4 of 28)"	AluSx1|SINE|Alu	324524	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr5.72112667.-	chr5	72112667	72112668	-	0	NA	"intron (NM_002270, intron 1 of 24)"	CpG	-249	NM_002270	3842	Hs.482497	NM_002270	ENSG00000083312	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
chr14.35800653.+	chr14	35800653	35800654	+	0	NA	Intergenic	AluSx|SINE|Alu	39079	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr2.62725722.+	chr2	62725722	62725723	+	0	NA	Intergenic	AluYa5|SINE|Alu	7882	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr1.93647363.+	chr1	93647363	93647364	+	0	NA	"intron (NM_206886, intron 1 of 27)"	AluSg7|SINE|Alu	1082	NM_206886	343099	Hs.482873	NM_206886	ENSG00000122483	CCDC18	NY-SAR-41|dJ717I23.1	coiled-coil domain containing 18	protein-coding
chrX.13062317.-	chrX	13062317	13062318	-	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	-600	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr2.87624391.+	chr2	87624391	87624392	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-130583	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr3.50701704.+	chr3	50701704	50701705	+	0	NA	Intergenic	AluY|SINE|Alu	-10807	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr17.8061037.+	chr17	8061037	8061038	+	0	NA	Intergenic	AluY|SINE|Alu	5256	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr13.111285570.-	chr13	111285570	111285571	-	0	NA	"intron (NR_040103, intron 5 of 9)"	LTR12C|LTR|ERV1	-17639	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr6.163752472.-	chr6	163752472	163752473	-	0	NA	Intergenic	Intergenic	6967	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr12.105389724.-	chr12	105389724	105389725	-	0	NA	Intergenic	AluY|SINE|Alu	-9626	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr8.144267393.-	chr8	144267393	144267394	-	0	NA	Intergenic	CpG	25340	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr22.43238153.-	chr22	43238153	43238154	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15255	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr18.60383225.+	chr18	60383225	60383226	+	0	NA	"exon (NM_194449, exon 1 of 17)"	"exon (NM_194449, exon 1 of 17)"	553	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
chr7.16632878.-	chr7	16632878	16632879	-	0	NA	Intergenic	AluJb|SINE|Alu	-52564	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr2.61701787.+	chr2	61701787	61701788	+	0	NA	Intergenic	AluSg|SINE|Alu	-3938	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr12.66636822.-	chr12	66636822	66636823	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53844	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr18.46969474.+	chr18	46969474	46969475	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17605	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr9.120507362.-	chr9	120507362	120507363	-	0	NA	Intergenic	CpG	-40909	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr18.334940.-	chr18	334940	334941	-	0	NA	"exon (NM_130386, exon 6 of 10)"	"exon (NM_130386, exon 6 of 10)"	66881	NM_005131	9984	Hs.712543	NM_005131	ENSG00000079134	THOC1	HPR1|P84|P84N5	THO complex 1	protein-coding
chr11.74107058.-	chr11	74107058	74107059	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2444	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr4.166248572.+	chr4	166248572	166248573	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-246	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr4.1626684.+	chr4	1626684	1626685	+	0	NA	Intergenic	CpG	59034	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr16.89777223.-	chr16	89777223	89777224	-	0	NA	"exon (NM_004913, exon 10 of 15)"	"exon (NM_004913, exon 10 of 15)"	1041	NR_036480	100128881	Hs.666282	NR_036480	ENSG00000261373	LOC100128881	-	uncharacterized LOC100128881	miscRNA
chr19.11280655.+	chr19	11280655	11280656	+	0	NA	"intron (NM_001136191, intron 11 of 12)"	CpG	-14171	NM_182513	147841	Hs.381225	NM_182513		SPC24	SPBC24	"SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr1.9832325.-	chr1	9832325	9832326	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52225	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr6.82952690.-	chr6	82952690	82952691	-	0	NA	"intron (NM_015525, intron 1 of 28)"	AluY|SINE|Alu	-4758	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI|RP1-93K22.1	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
chr4.55034920.-	chr4	55034920	55034921	-	0	NA	Intergenic	AluSx3|SINE|Alu	60344	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr12.117605442.-	chr12	117605442	117605443	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22858	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr8.26148295.-	chr8	26148295	26148296	-	0	NA	promoter-TSS (NM_002717)	promoter-TSS (NM_002717)	712	NM_002717	5520	Hs.146339	NM_001177591	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	"protein phosphatase 2, regulatory subunit B, alpha"	protein-coding
chr22.22259612.+	chr22	22259612	22259613	+	0	NA	Intergenic	AluSq2|SINE|Alu	-37642	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr1.161993570.+	chr1	161993570	161993571	+	0	NA	promoter-TSS (NM_015441)	promoter-TSS (NM_015441)	74	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr7.130728528.-	chr7	130728528	130728529	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	-63261	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr2.136760863.+	chr2	136760863	136760864	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17641	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr8.128328726.-	chr8	128328726	128328727	-	0	NA	Intergenic	Intergenic	99131	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr3.133028696.+	chr3	133028696	133028697	+	0	NA	"intron (NM_023943, intron 3 of 5)"	AluYa5|SINE|Alu	-90094	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|LIFL-L|PHAKOSIN	"beaded filament structural protein 2, phakinin"	protein-coding
chr8.76968568.-	chr8	76968568	76968569	-	0	NA	Intergenic	AluY|SINE|Alu	-516365	NM_004133	3174	Hs.241529	NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	"hepatocyte nuclear factor 4, gamma"	protein-coding
chr12.42621973.-	chr12	42621973	42621974	-	0	NA	"intron (NM_001190979, intron 2 of 4)"	SVA_F|Other|Other	-10116	NM_001190977	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr6.80035298.-	chr6	80035298	80035299	-	0	NA	Intergenic	L1PA4|LINE|L1	90843	NM_004242	9324	Hs.77558	NM_001201362	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chr5.114712423.-	chr5	114712423	114712424	-	0	NA	Intergenic	AluYc3|SINE|Alu	79965	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr16.30960898.-	chr16	30960898	30960899	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-493	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr12.113494396.+	chr12	113494396	113494397	+	0	NA	Intergenic	CpG	-1266	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr10.134684076.-	chr10	134684076	134684077	-	0	NA	"intron (NM_001200049, intron 32 of 57)"	Tigger1|DNA|TcMar-Tigger	-72013	NM_001200049	54777	Hs.719815	NM_001200049	ENSG00000171811	TTC40	C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	tetratricopeptide repeat domain 40	protein-coding
chr2.198058479.-	chr2	198058479	198058480	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117042	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr10.59351294.+	chr10	59351294	59351295	+	0	NA	Intergenic	AluY|SINE|Alu	-286975	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr17.38239329.+	chr17	38239329	38239330	+	0	NA	"intron (NM_199334, intron 4 of 8)"	AluY|SINE|Alu	17649	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr13.114791529.+	chr13	114791529	114791530	+	0	NA	"intron (NM_007368, intron 7 of 23)"	"intron (NM_007368, intron 7 of 23)"	106566	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr9.34329554.-	chr9	34329554	34329555	-	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-50	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr2.55647049.+	chr2	55647049	55647050	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	8	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chrX.42939953.+	chrX	42939953	42939954	+	0	NA	Intergenic	AluSx|SINE|Alu	-302467	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr1.32679387.+	chr1	32679387	32679388	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4692	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr20.62586827.-	chr20	62586827	62586828	-	0	NA	"non-coding (NR_027287, exon 1 of 2)"	"non-coding (NR_027287, exon 1 of 2)"	-973	NM_017859	54963	Hs.504998	NM_001193379	ENSG00000198276	UCKL1	UCK1-LIKE|UCK1L|URKL1	uridine-cytidine kinase 1-like 1	protein-coding
chr12.96314725.-	chr12	96314725	96314726	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21703	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr10.7626526.-	chr10	7626526	7626527	-	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	-35110	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr7.5582585.-	chr7	5582585	5582586	-	0	NA	Intergenic	Intergenic	12353	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr2.58077701.+	chr2	58077701	58077702	+	0	NA	Intergenic	Intergenic	-196076	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr17.4453842.-	chr17	4453842	4453843	-	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	-4839	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chrX.129231030.-	chrX	129231030	129231031	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13445	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chrM.16331.-	chrM	16331	16332	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.1252668.-	chr19	1252668	1252669	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4116	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr16.83964966.+	chr16	83964966	83964967	+	0	NA	Intergenic	Intergenic	-21861	NM_182981	29948	Hs.128055	NM_182981	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
chr1.113336821.+	chr1	113336821	113336822	+	0	NA	Intergenic	MER70B|LTR|ERVL	73632	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr12.42621978.+	chr12	42621978	42621979	+	0	NA	"intron (NM_001190979, intron 2 of 4)"	SVA_F|Other|Other	10111	NM_001190977	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr2.27360636.+	chr2	27360636	27360637	+	0	NA	"exon (NM_178553, exon 3 of 3)"	"exon (NM_178553, exon 3 of 3)"	1696	NM_178553	339779	Hs.136555	NM_178553	ENSG00000186143	C2orf53	-	chromosome 2 open reading frame 53	protein-coding
chr19.10041267.+	chr19	10041267	10041268	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5803	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr15.83419180.+	chr15	83419180	83419181	+	0	NA	Intergenic	CpG	-5517	NR_003011	677778	Hs.743895	NR_003011	ENSG00000252690	SCARNA15	ACA45	small Cajal body-specific RNA 15	miscRNA
chr6.159416789.+	chr6	159416789	159416790	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4409	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr1.162040085.+	chr1	162040085	162040086	+	0	NA	"intron (NM_014697, intron 1 of 9)"	"intron (NM_014697, intron 1 of 9)"	504	NM_014697	9722	Hs.731942	NM_001126060	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding
chr7.32767757.+	chr7	32767757	32767758	+	0	NA	"non-coding (NR_003502, exon 1 of 1)"	"non-coding (NR_003502, exon 1 of 1)"	195	NR_003502	441208	Hs.510645	NR_003502		ZNRF2P1	-	zinc and ring finger 2 pseudogene 1	pseudo
chr3.49711691.+	chr3	49711691	49711692	+	0	NA	"5' UTR (NM_001640, exon 1 of 22)"	"5' UTR (NM_001640, exon 1 of 22)"	256	NM_001640	327	Hs.517969	NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	N-acylaminoacyl-peptide hydrolase	protein-coding
chr5.167154316.+	chr5	167154316	167154317	+	0	NA	"intron (NM_001122679, intron 2 of 28)"	AluY|SINE|Alu	442473	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr3.122695717.+	chr3	122695717	122695718	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-736	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr6.126111924.-	chr6	126111924	126111925	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-15	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr7.532159.-	chr7	532159	532160	-	0	NA	Intergenic	Intergenic	-27322	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr18.44499436.+	chr18	44499436	44499437	+	0	NA	Intergenic	AluSp|SINE|Alu	-1941	NM_004671	9063	Hs.657844	NM_004671		PIAS2	ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4	"protein inhibitor of activated STAT, 2"	protein-coding
chr17.27894524.+	chr17	27894524	27894525	+	0	NA	promoter-TSS (NM_198147)	promoter-TSS (NM_198147)	-482	NM_198147	116236	Hs.106510	NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
chr1.28703571.-	chr1	28703571	28703572	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7478	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr5.57859482.-	chr5	57859482	57859483	-	0	NA	Intergenic	SVA_A|Other|Other	19457	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr12.133115258.+	chr12	133115258	133115259	+	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	48101	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr16.68889367.+	chr16	68889367	68889368	+	0	NA	"intron (NM_024562, intron 1 of 17)"	AluSx|SINE|Alu	11858	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
chr8.21944465.-	chr8	21944465	21944466	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2249	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chr1.25943527.+	chr1	25943527	25943528	+	0	NA	promoter-TSS (NM_020379)	promoter-TSS (NM_020379)	-432	NM_020379	57134	Hs.197043	NM_020379		MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	"mannosidase, alpha, class 1C, member 1"	protein-coding
chr11.7597262.+	chr11	7597262	7597263	+	0	NA	"intron (NM_003621, intron 3 of 23)"	"intron (NM_003621, intron 3 of 23)"	-21155	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr7.54614236.+	chr7	54614236	54614237	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4217	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr10.8640547.-	chr10	8640547	8640548	-	0	NA	Intergenic	AluSq2|SINE|Alu	-543880	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr5.141558674.+	chr5	141558674	141558675	+	0	NA	Intergenic	AluSg|SINE|Alu	70350	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr16.70510189.+	chr16	70510189	70510190	+	0	NA	"intron (NM_145059, intron 20 of 23)"	AluY|SINE|Alu	21691	NM_145059	197258	Hs.7907	NM_145059	ENSG00000157353	FUK	1110046B12Rik	fucokinase	protein-coding
chr2.85691625.+	chr2	85691625	85691626	+	0	NA	Intergenic	AluSg7|SINE|Alu	29707	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr19.48476360.+	chr19	48476360	48476361	+	0	NA	"intron (NM_001128326, intron 5 of 5)"	AluY|SINE|Alu	17421	NR_024217	100170218	Hs.723092	NR_024217		SNAR-C2	-	small ILF3/NF90-associated RNA C2	snRNA
chr6.24720951.-	chr6	24720951	24720952	-	0	NA	Intergenic	CpG	1548	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr12.107112642.-	chr12	107112642	107112643	-	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	34164	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr2.73613425.+	chr2	73613425	73613426	+	0	NA	"intron (NM_015120, intron 1 of 22)"	CpG	539	NM_015120	7840	Hs.184720	NM_015120	ENSG00000116127	ALMS1	ALSS	Alstrom syndrome 1	protein-coding
chr1.79749323.-	chr1	79749323	79749324	-	0	NA	Intergenic	AluSx|SINE|Alu	276828	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr12.49542329.-	chr12	49542329	49542330	-	0	NA	Intergenic	AluY|SINE|Alu	17025	NM_006082	10376	Hs.524390	NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	"tubulin, alpha 1b"	protein-coding
chr21.42621748.+	chr21	42621748	42621749	+	0	NA	"intron (NM_138991, intron 6 of 7)"	"intron (NM_138991, intron 6 of 7)"	-64582	NM_182832	191585	Hs.472492	NM_182832		PLAC4	C21orf115|PRED78	placenta-specific 4	protein-coding
chr10.12344448.+	chr10	12344448	12344449	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47135	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr16.4835227.-	chr16	4835227	4835228	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3171	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr16.87864489.-	chr16	87864489	87864490	-	0	NA	"3' UTR (NM_003486, exon 10 of 10)"	"3' UTR (NM_003486, exon 10 of 10)"	-38611	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chrX.39680385.+	chrX	39680385	39680386	+	0	NA	Intergenic	CpG	276334	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr9.719223.+	chr9	719223	719224	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12417	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr9.115480214.-	chr9	115480214	115480215	-	0	NA	"intron (NM_021218, intron 1 of 4)"	CpG	-173	NM_021218	58493	Hs.658575	NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
chr2.70555567.+	chr2	70555567	70555568	+	0	NA	Intergenic	AluY|SINE|Alu	-26347	NM_032822	84908	Hs.516077	NM_032822	ENSG00000035141	FAM136A	-	"family with sequence similarity 136, member A"	protein-coding
chr7.5396363.-	chr7	5396363	5396364	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	-66814	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr5.158420085.+	chr5	158420085	158420086	+	0	NA	"intron (NM_024007, intron 6 of 15)"	AluSz|SINE|Alu	106703	NM_024007	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
chr12.33592864.-	chr12	33592864	33592865	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	110	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr2.61307000.+	chr2	61307000	61307001	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13637	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr18.11959886.+	chr18	11959886	11959887	+	0	NA	Intergenic	SVA_D|Other|Other	-21541	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr1.37546476.-	chr1	37546476	37546477	-	0	NA	Intergenic	SVA_D|Other|Other	46632	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr10.88698882.+	chr10	88698882	88698883	+	0	NA	"intron (NM_024756, intron 6 of 6)"	AluSp|SINE|Alu	18543	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chr10.118881403.-	chr10	118881403	118881404	-	0	NA	"intron (NM_001258300, intron 1 of 17)"	AluY|SINE|Alu	-4694	NM_001258300	57698	Hs.501140	NM_001127211	ENSG00000187164	KIAA1598	-	KIAA1598	protein-coding
chr18.906201.+	chr18	906201	906202	+	0	NA	"intron (NM_001117, intron 1 of 3)"	CpG	1004	NM_001117	116	Hs.727476	NM_001099733	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
chr2.221058139.-	chr2	221058139	221058140	-	0	NA	Intergenic	MER52A|LTR|ERV1	286853	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr10.80829915.-	chr10	80829915	80829916	-	0	NA	"intron (NM_020338, intron 1 of 24)"	CpG-2984	-1123	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	"zinc finger, MIZ-type containing 1"	protein-coding
chr22.38336438.+	chr22	38336438	38336439	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13216	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr6.89378009.-	chr6	89378009	89378010	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295339	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr2.98703587.-	chr2	98703587	98703588	-	0	NA	promoter-TSS (NM_144992)	promoter-TSS (NM_144992)	8	NM_144992	200403	Hs.269977	NM_144992	ENSG00000168658	VWA3B	-	von Willebrand factor A domain containing 3B	protein-coding
chr1.197418640.-	chr1	197418640	197418641	-	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	-181306	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr9.16748453.+	chr9	16748453	16748454	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	122333	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr7.22396711.+	chr7	22396711	22396712	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-178	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr8.22929675.+	chr8	22929675	22929676	+	0	NA	"intron (NR_038873, intron 1 of 2)"	"intron (NR_038873, intron 1 of 2)"	-2975	NM_003842	8795	Hs.521456	NM_003842	ENSG00000120889	TNFRSF10B	CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9	"tumor necrosis factor receptor superfamily, member 10b"	protein-coding
chr11.16635342.+	chr11	16635342	16635343	+	0	NA	Intergenic	CpG	-124806	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr15.34444565.+	chr15	34444565	34444566	+	0	NA	"intron (NM_024713, intron 4 of 9)"	AluSg|SINE|Alu	50291	NM_152595	161779	Hs.156317	NM_152595	ENSG00000182405	PGBD4	-	piggyBac transposable element derived 4	protein-coding
chr8.12990355.-	chr8	12990355	12990356	-	0	NA	"intron (NM_182643, intron 5 of 17)"	CpG	-454	NM_006094	10395	Hs.134296	NM_001164271	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	deleted in liver cancer 1	protein-coding
chr1.8837715.+	chr1	8837715	8837716	+	0	NA	"intron (NM_001042681, intron 1 of 22)"	AluY|SINE|Alu	39984	NM_012102	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr21.43198306.+	chr21	43198306	43198307	+	0	NA	Intergenic	Intergenic	-11057	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr7.95234909.+	chr7	95234909	95234910	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8984	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr15.66995999.-	chr15	66995999	66996000	-	0	NA	"non-coding (NR_027654, exon 1 of 5)"	"non-coding (NR_027654, exon 1 of 5)"	-1325	NM_005585	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr17.5732877.+	chr17	5732877	5732878	+	0	NA	"intron (NR_040000, intron 1 of 3)"	AluSx1|SINE|Alu	57323	NR_040000	339166	Hs.736088	NR_040000	ENSG00000179314	LOC339166	-	uncharacterized LOC339166	miscRNA
chr13.103088625.-	chr13	103088625	103088626	-	0	NA	Intergenic	AluY|SINE|Alu	34501	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr14.105954063.+	chr14	105954063	105954064	+	0	NA	"intron (NM_001311, intron 2 of 5)"	CpG-7559	806	NM_001311	1396	Hs.70327	NM_001311	ENSG00000213145	CRIP1	CRHP|CRIP|CRP-1|CRP1	cysteine-rich protein 1 (intestinal)	protein-coding
chr2.137165844.+	chr2	137165844	137165845	+	0	NA	Intergenic	Intergenic	-290119	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr14.99946824.-	chr14	99946824	99946825	-	0	NA	promoter-TSS (NM_001099402)	promoter-TSS (NM_001099402)	-402	NM_032233	84193	Hs.510407	NM_032233	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding
chr9.7934814.-	chr9	7934814	7934815	-	0	NA	Intergenic	AluY|SINE|Alu	135015	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr1.26591547.+	chr1	26591547	26591548	+	0	NA	"intron (NM_022778, intron 7 of 13)"	AluSx1|SINE|Alu	-14666	NM_031286	83442	Hs.109051	NM_031286		SH3BGRL3	SH3BP-1|TIP-B1	SH3 domain binding glutamic acid-rich protein like 3	protein-coding
chr11.2051330.+	chr11	2051330	2051331	+	0	NA	Intergenic	Intergenic	-32265	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr20.53092208.+	chr20	53092208	53092209	+	0	NA	promoter-TSS (NM_018431)	promoter-TSS (NM_018431)	-58	NM_018431	55816	Hs.656582	NM_018431	ENSG00000101134	DOK5	C20orf180	docking protein 5	protein-coding
chr2.240980312.+	chr2	240980312	240980313	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2087	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr9.10974627.+	chr9	10974627	10974628	+	0	NA	Intergenic	L1PBa|LINE|L1	-361904	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.135446913.+	chr7	135446913	135446914	+	0	NA	Intergenic	Intergenic	-13319	NM_205855	389558	Hs.55200	NM_205855	ENSG00000189320	FAM180A	UNQ1940	"family with sequence similarity 180, member A"	protein-coding
chr10.42360607.-	chr10	42360607	42360608	-	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-502886	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr18.63211095.-	chr18	63211095	63211096	-	0	NA	Intergenic	AluY|SINE|Alu	206393	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr14.77962857.+	chr14	77962857	77962858	+	0	NA	"intron (NM_182509, intron 1 of 5)"	AluSg|SINE|Alu	2353	NM_199296	145501	Hs.29742	NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2 homolog (zebrafish)	protein-coding
chr17.4926581.+	chr17	4926581	4926582	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12146	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr11.2213902.+	chr11	2213902	2213903	+	0	NA	Intergenic	Intergenic	19609	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr11.64120555.-	chr11	64120555	64120556	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6070	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr22.22259622.+	chr22	22259622	22259623	+	0	NA	Intergenic	AluSq2|SINE|Alu	-37652	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr11.92637342.-	chr11	92637342	92637343	-	0	NA	Intergenic	AluY|SINE|Alu	65447	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chrX.32812438.-	chrX	32812438	32812439	-	0	NA	"intron (NM_000109, intron 7 of 78)"	AluY|SINE|Alu	-225879	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr15.91697563.+	chr15	91697563	91697564	+	0	NA	"intron (NM_014848, intron 2 of 13)"	L2a|LINE|L2	54024	NM_014848	9899	Hs.21754	NM_001167580	ENSG00000185518	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding
chr16.3109373.+	chr16	3109373	3109374	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5940	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr16.88387011.+	chr16	88387011	88387012	+	0	NA	Intergenic	L2b|LINE|L2	-106868	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr3.11722833.-	chr3	11722833	11722834	-	0	NA	"intron (NM_014667, intron 2 of 5)"	AluY|SINE|Alu	37435	NM_001128219	9686	Hs.740389	NM_001128219	ENSG00000144560	VGLL4	VGL-4	vestigial like 4 (Drosophila)	protein-coding
chr12.34191960.-	chr12	34191960	34191961	-	0	NA	Intergenic	AluSp|SINE|Alu	-16744	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr17.7605012.+	chr17	7605012	7605013	+	0	NA	"exon (NM_001143992, exon 7 of 11)"	"exon (NM_001143992, exon 7 of 11)"	-3508	NM_001406	1949	Hs.26988	NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin-B3	protein-coding
chr9.861779.+	chr9	861779	861780	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20089	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr19.34394377.+	chr19	34394377	34394378	+	0	NA	Intergenic	AluSx1|SINE|Alu	106626	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chrX.19894015.+	chrX	19894015	19894016	+	0	NA	"intron (NM_031892, intron 1 of 17)"	"intron (NM_031892, intron 1 of 17)"	11729	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr3.97587020.-	chr3	97587020	97587021	-	0	NA	"intron (NM_153605, intron 3 of 21)"	AluYk4|SINE|Alu	-46136	NM_153605	131544	Hs.733378	NM_153605		CRYBG3	DKFZp667G2110	beta-gamma crystallin domain containing 3	protein-coding
chr1.8021846.-	chr1	8021846	8021847	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-132	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr19.46277571.-	chr19	46277571	46277572	-	0	NA	"intron (NM_001081563, intron 8 of 13)"	AluY|SINE|Alu	5074	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
chr22.20137588.-	chr22	20137588	20137589	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	157	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr7.2944148.-	chr7	2944148	2944149	-	0	NA	Intergenic	Intergenic	60189	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr8.146024442.+	chr8	146024442	146024443	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	181	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr19.18253592.-	chr19	18253592	18253593	-	0	NA	"intron (NM_015016, intron 20 of 26)"	AluJb|SINE|Alu	10396	NR_073517	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr3.85080902.+	chr3	85080902	85080903	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72769	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr18.77244882.-	chr18	77244882	77244883	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84556	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr3.194483966.+	chr3	194483966	194483967	+	0	NA	"intron (NR_037891, intron 3 of 3)"	AluSx|SINE|Alu	54816	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	miscRNA
chr1.227982937.+	chr1	227982937	227982938	+	0	NA	Intergenic	Intergenic	-20481	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chrM.9311.+	chrM	9311	9312	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.18180392.-	chr19	18180392	18180393	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17305	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr13.28369126.-	chr13	28369126	28369127	-	0	NA	Intergenic	Intergenic	-2346	NM_145657	219409	Hs.351785	NM_145657		GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
chr1.99544231.+	chr1	99544231	99544232	+	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	-73782	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr14.24785829.+	chr14	24785829	24785830	+	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	3516	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr5.2391223.+	chr5	2391223	2391224	+	0	NA	Intergenic	Intergenic	360546	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr6.142795176.+	chr6	142795176	142795177	+	0	NA	Intergenic	AluSc|SINE|Alu	163797	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr19.5686510.+	chr19	5686510	5686511	+	0	NA	"exon (NM_001267868, exon 5 of 9)"	"exon (NM_001267868, exon 5 of 9)"	-3762	NM_033643	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
chr14.64299485.+	chr14	64299485	64299486	+	0	NA	Intergenic	AluJb|SINE|Alu	-20198	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr7.1710283.+	chr7	1710283	1710284	+	0	NA	Intergenic	CpG	-38515	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr19.34623417.+	chr19	34623417	34623418	+	0	NA	Intergenic	SVA_D|Other|Other	-39935	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr20.48720690.+	chr20	48720690	48720691	+	0	NA	"intron (NM_001257397, intron 1 of 4)"	AluSc|SINE|Alu	9045	NM_001257399	7335	Hs.420529	NM_001032288	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
chr20.46019505.+	chr20	46019505	46019506	+	0	NA	Intergenic	AluY|SINE|Alu	-34031	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr3.122695714.-	chr3	122695714	122695715	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	733	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr6.52521368.+	chr6	52521368	52521369	+	0	NA	Intergenic	SVA_D|Other|Other	-7831	NR_024403	730101	Hs.7921	NR_024403		LOC730101	-	uncharacterized LOC730101	miscRNA
chr11.43779057.+	chr11	43779057	43779058	+	0	NA	"intron (NM_016142, intron 3 of 10)"	AluYb8|SINE|Alu	76914	NM_016142	51144	Hs.132513	NM_016142	ENSG00000149084	HSD17B12	KAR|SDR12C1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding
chr22.38166154.+	chr22	38166154	38166155	+	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	23913	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr4.96097961.+	chr4	96097961	96097962	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85319	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr1.60870842.-	chr1	60870842	60870843	-	0	NA	Intergenic	AluYa5|SINE|Alu	331400	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chr12.33592619.+	chr12	33592619	33592620	+	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	135	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr7.821294.+	chr7	821294	821295	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33900	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr12.132372580.+	chr12	132372580	132372581	+	0	NA	Intergenic	AluSx|SINE|Alu	-6699	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr17.73439516.-	chr17	73439516	73439517	-	0	NA	Intergenic	AluSg4|SINE|Alu	13148	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr20.5213470.-	chr20	5213470	5213471	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81545	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr13.49426609.+	chr13	49426609	49426610	+	0	NA	Intergenic	AluSp|SINE|Alu	-123439	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr2.32250699.+	chr2	32250699	32250700	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14145	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr2.61294730.+	chr2	61294730	61294731	+	0	NA	"intron (NM_032506, intron 1 of 21)"	AluSc|SINE|Alu	1367	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr19.823578.+	chr19	823578	823579	+	0	NA	Intergenic	Intergenic	-1626	NM_001270366	79948	Hs.743704	NM_001270366	ENSG00000129951	LPPR3	LPR3|PRG-2|PRG2	lipid phosphate phosphatase-related protein type 3	protein-coding
chr18.41408423.-	chr18	41408423	41408424	-	0	NA	Intergenic	AluSx3|SINE|Alu	550808	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr10.71044928.+	chr10	71044928	71044929	+	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	15172	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr2.242480075.-	chr2	242480075	242480076	-	0	NA	Intergenic	Intergenic	18071	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr16.70356406.-	chr16	70356406	70356407	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23344	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr1.197754600.-	chr1	197754600	197754601	-	0	NA	Intergenic	AluY|SINE|Alu	9977	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr15.41539562.+	chr15	41539562	41539563	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16125	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr16.1332312.-	chr16	1332312	1332313	-	0	NA	Intergenic	AluSx|SINE|Alu	-26039	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr1.197418609.+	chr1	197418609	197418610	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181275	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr9.34329760.-	chr9	34329760	34329761	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-256	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr4.40022063.+	chr4	40022063	40022064	+	0	NA	Intergenic	Intergenic	-36461	NM_018177	55728	Hs.391463	NM_018177	ENSG00000078177	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding
chr14.105618900.+	chr14	105618900	105618901	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16261	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr6.142795158.+	chr6	142795158	142795159	+	0	NA	Intergenic	AluSc|SINE|Alu	163815	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr14.94606693.+	chr14	94606693	94606694	+	0	NA	Intergenic	Intergenic	-10736	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chr16.87799902.-	chr16	87799902	87799903	-	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	304	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr21.47343968.+	chr21	47343968	47343969	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-57695	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr7.1474517.+	chr7	1474517	1474518	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24592	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr9.138065709.-	chr9	138065709	138065710	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7746	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr20.50383769.-	chr20	50383769	50383770	-	0	NA	"intron (NM_006045, intron 1 of 27)"	CpG	-1139	NM_006045	10079	Hs.743248	NM_006045	ENSG00000054793	ATP9A	ATPIIA	"ATPase, class II, type 9A"	protein-coding
chr1.156721706.+	chr1	156721706	156721707	+	0	NA	promoter-TSS (NM_004494)	promoter-TSS (NM_004494)	-163	NM_004494	3068	Hs.743948	NM_001126050	ENSG00000143321	HDGF	HMG1L2	hepatoma-derived growth factor	protein-coding
chr19.45660356.+	chr19	45660356	45660357	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3052	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr19.58125570.-	chr19	58125570	58125571	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	260	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr19.8408083.+	chr19	8408083	8408084	+	0	NA	promoter-TSS (NM_198471)	promoter-TSS (NM_198471)	63	NM_198471	256949	Hs.322473	NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
chr5.1494537.-	chr5	1494537	1494538	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29539	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr5.52316778.+	chr5	52316778	52316779	+	0	NA	"intron (NR_073107, intron 1 of 28)"	AluSx|SINE|Alu	31622	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	"integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)"	protein-coding
chr11.46617785.-	chr11	46617785	46617786	-	0	NA	Intergenic	AluYc|SINE|Alu	2166	NM_001267782	55626	Hs.654644	NM_001267782	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy/beclin-1 regulator 1	protein-coding
chr6.13335670.-	chr6	13335670	13335671	-	0	NA	Intergenic	AluYa5|SINE|Alu	6883	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr2.9934245.-	chr2	9934245	9934246	-	0	NA	Intergenic	Intergenic	49326	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr19.47364557.+	chr19	47364557	47364558	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-10354	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr3.188708058.+	chr3	188708058	188708059	+	0	NA	Intergenic	Intergenic	-181705	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr5.1494517.-	chr5	1494517	1494518	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29559	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr3.196618968.+	chr3	196618968	196618969	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluJb|SINE|Alu	24241	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr1.32122120.-	chr1	32122120	32122121	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11282	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr14.71391903.+	chr14	71391903	71391904	+	0	NA	"intron (NM_014982, intron 1 of 35)"	AluSz6|SINE|Alu	17781	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr18.2377832.-	chr18	2377832	2377833	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193657	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr10.13354493.-	chr10	13354493	13354494	-	0	NA	Intergenic	AluSp|SINE|Alu	12363	NM_006214	5264	Hs.498732	NM_001037537	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
chr9.86627290.-	chr9	86627290	86627291	-	0	NA	Intergenic	AluY|SINE|Alu	-31653	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr12.56127547.+	chr12	56127547	56127548	+	0	NA	Intergenic	AluSg|SINE|Alu	-4090	NM_001257389	967	Hs.445570	NM_001257389	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
chrM.9182.+	chrM	9182	9183	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.151199130.+	chr1	151199130	151199131	+	0	NA	"intron (NM_001135638, intron 3 of 15)"	AluSq2|SINE|Alu	-28067	NM_002810	5710	Hs.505059	NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 4"	protein-coding
chr8.141523823.+	chr8	141523823	141523824	+	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	1742	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr17.79022758.+	chr17	79022758	79022759	+	0	NA	"intron (NM_017451, intron 1 of 14)"	"intron (NM_017451, intron 1 of 14)"	13811	NM_006340	10458	Hs.128316	NM_001144888	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1-associated protein 2	protein-coding
chr20.18673644.+	chr20	18673644	18673645	+	0	NA	"intron (NM_080820, intron 4 of 5)"	AluSz|SINE|Alu	100982	NR_026884	29075	Hs.584899	NM_014162	ENSG00000179935	LINC00652	HSPC072	long intergenic non-protein coding RNA 652	miscRNA
chr19.10408203.-	chr19	10408203	10408204	-	0	NA	TTS (NM_003259)	TTS (NM_003259)	-7548	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr6.142795188.-	chr6	142795188	142795189	-	0	NA	Intergenic	AluSc|SINE|Alu	-163785	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr9.116102455.+	chr9	116102455	116102456	+	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	165	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr5.133968923.+	chr5	133968923	133968924	+	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	-390	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr9.139780628.-	chr9	139780628	139780629	-	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	337	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr16.28435244.+	chr16	28435244	28435245	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2531	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr17.27070054.+	chr17	27070054	27070055	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-969	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chrX.133976895.+	chrX	133976895	133976896	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35672	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr8.141559338.+	chr8	141559338	141559339	+	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	37257	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr14.102101599.+	chr14	102101599	102101600	+	0	NA	Intergenic	Intergenic	73911	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr17.76124832.-	chr17	76124832	76124833	-	0	NA	promoter-TSS (NM_001127198)	promoter-TSS (NM_001127198)	-29	NM_001127198	11322	Hs.632227	NM_001127198	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P	transmembrane channel-like 6	protein-coding
chr4.26862500.+	chr4	26862500	26862501	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	187	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr16.3292262.-	chr16	3292262	3292263	-	0	NA	"3' UTR (NM_000243, exon 10 of 10)"	"3' UTR (NM_000243, exon 10 of 10)"	6805	NM_001145446	7752	Hs.632222	NM_001145446	ENSG00000010539	ZNF200	-	zinc finger protein 200	protein-coding
chr4.106689302.+	chr4	106689302	106689303	+	0	NA	"intron (NM_024751, intron 5 of 11)"	AluY|SINE|Alu	57332	NM_001031720	79807	Hs.161429	NM_001031720	ENSG00000138780	GSTCD	-	"glutathione S-transferase, C-terminal domain containing"	protein-coding
chr22.51043006.-	chr22	51043006	51043007	-	0	NA	"exon (NM_016431, exon 3 of 10)"	"exon (NM_016431, exon 3 of 10)"	-1444	NM_016431	23542	Hs.558180	NM_012324	ENSG00000008735	MAPK8IP2	IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
chr15.89219691.-	chr15	89219691	89219692	-	0	NA	Intergenic	AluSx|SINE|Alu	-37652	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
chr4.185174131.-	chr4	185174131	185174132	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35017	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chrX.152890822.-	chrX	152890822	152890823	-	0	NA	Intergenic	Intergenic	17075	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr9.137288479.-	chr9	137288479	137288480	-	0	NA	"intron (NM_002957, intron 1 of 9)"	"intron (NM_002957, intron 1 of 9)"	-17222	NR_039816	100616236		NR_039816		MIR4669	-	microRNA 4669	miscRNA
chr3.115832409.+	chr3	115832409	115832410	+	0	NA	"intron (NM_002338, intron 1 of 6)"	AluYa5|SINE|Alu	331976	NM_002338	4045	Hs.723683	NM_002338		LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
chr1.12040475.+	chr1	12040475	12040476	+	0	NA	"5' UTR (NM_014874, exon 1 of 19)"	"5' UTR (NM_014874, exon 1 of 19)"	237	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr2.120775621.+	chr2	120775621	120775622	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4836	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr17.38400061.+	chr17	38400061	38400062	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24487	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr2.202898667.-	chr2	202898667	202898668	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	643	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr7.74447135.-	chr7	74447135	74447136	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42564	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr1.21893051.+	chr1	21893051	21893052	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57193	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr21.45649036.+	chr21	45649036	45649037	+	0	NA	"intron (NM_015259, intron 6 of 6)"	"intron (NM_015259, intron 6 of 6)"	11798	NM_015259	23308	Hs.14155	NM_015259		ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T-cell co-stimulator ligand	protein-coding
chr17.4422238.-	chr17	4422238	4422239	-	0	NA	"intron (NM_001124758, intron 2 of 12)"	"intron (NM_001124758, intron 2 of 12)"	-20109	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
chr11.61606636.-	chr11	61606636	61606637	-	0	NA	"intron (NM_004265, intron 2 of 11)"	"intron (NM_004265, intron 2 of 11)"	-10923	NM_004265	9415	Hs.502745	NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
chr3.52498140.+	chr3	52498140	52498141	+	0	NA	"intron (NM_001276294, intron 3 of 13)"	AluSz6|SINE|Alu	8616	NM_007184	11188	Hs.435290	NM_001276293	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
chr6.150247073.-	chr6	150247073	150247074	-	0	NA	Intergenic	CpG	2859	NM_001001788	353091	Hs.558792	NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
chr1.65532974.+	chr1	65532974	65532975	+	0	NA	Intergenic	CpG	-8783	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr11.64993133.-	chr11	64993133	64993134	-	0	NA	"exon (NM_001004326, exon 6 of 6)"	"exon (NM_001004326, exon 6 of 6)"	-11822	NM_001004326	440044	Hs.532372	NM_001004326		SLC22A20	Oat6	"solute carrier family 22, member 20"	protein-coding
chr17.78220035.+	chr17	78220035	78220036	+	0	NA	"intron (NM_173626, intron 12 of 17)"	"intron (NM_173626, intron 12 of 17)"	-14625	NM_001256071	57674	Hs.743310	NM_001256071	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
chr8.27127624.+	chr8	27127624	27127625	+	0	NA	Intergenic	AluY|SINE|Alu	-11721	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr22.46522780.+	chr22	46522780	46522781	+	0	NA	Intergenic	Intergenic	13214	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr19.2462554.+	chr19	2462554	2462555	+	0	NA	Intergenic	Intergenic	-5588	NM_032737	84823	Hs.744015	NM_032737	ENSG00000176619	LMNB2	LAMB2|LMN2	lamin B2	protein-coding
chr7.74447206.-	chr7	74447206	74447207	-	0	NA	Intergenic	Intergenic	-42493	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr19.9311189.+	chr19	9311189	9311190	+	0	NA	Intergenic	L1MA3|LINE|L1	14358	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr9.39055082.+	chr9	39055082	39055083	+	0	NA	Intergenic	AluY|SINE|Alu	233218	NM_033655	79937	Hs.604441	NM_033655	ENSG00000106714	CNTNAP3	CASPR3|CNTNAP3A|RP11-138L21.1|RP11-290L7.1	contactin associated protein-like 3	protein-coding
chr19.53979668.-	chr19	53979668	53979669	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8679	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr1.17298988.+	chr1	17298988	17298989	+	0	NA	"3' UTR (NM_014675, exon 37 of 37)"	"3' UTR (NM_014675, exon 37 of 37)"	8185	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr18.21729712.-	chr18	21729712	21729713	-	0	NA	"intron (NM_153769, intron 3 of 5)"	LTR12C|LTR|ERV1	-10264	NM_138644	26256	Hs.511983	NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine-(Y)-phosphorylation regulated	protein-coding
chr19.11306119.-	chr19	11306119	11306120	-	0	NA	promoter-TSS (NM_015493)	promoter-TSS (NM_015493)	853	NM_015493	25959	Hs.723365	NM_001136191	ENSG00000197256	KANK2	ANKRD25|MXRA3|SIP	KN motif and ankyrin repeat domains 2	protein-coding
chrX.53111689.-	chrX	53111689	53111690	-	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	-147	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.109745053.+	chr12	109745053	109745054	+	0	NA	"intron (NM_213596, intron 2 of 9)"	"intron (NM_213596, intron 2 of 9)"	1972	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
chr1.32122136.-	chr1	32122136	32122137	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11298	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr15.25083316.-	chr15	25083316	25083317	-	0	NA	"intron (NM_022807, intron 2 of 12)"	AluSc8|SINE|Alu	-14522	NM_022808	6638	Hs.743549	NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
chr8.14882341.-	chr8	14882341	14882342	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171322	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr10.126538766.-	chr10	126538766	126538767	-	0	NA	Intergenic	AluSx|SINE|Alu	-48412	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr12.34353909.-	chr12	34353909	34353910	-	0	NA	Intergenic	AluSz|SINE|Alu	-178693	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr18.48115836.-	chr18	48115836	48115837	-	0	NA	"intron (NM_002747, intron 1 of 5)"	AluY|SINE|Alu	-29352	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chrX.135229880.-	chrX	135229880	135229881	-	0	NA	promoter-TSS (NM_001159700)	promoter-TSS (NM_001159700)	-321	NM_001449	2273	Hs.435369	NM_001159699	ENSG00000022267	FHL1	FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
chr19.1237505.+	chr19	1237505	1237506	+	0	NA	"intron (NM_152769, intron 1 of 8)"	CpG	485	NM_152769	255057	Hs.346575	NM_152769	ENSG00000099625	C19orf26	DOS	chromosome 19 open reading frame 26	protein-coding
chr14.60336392.-	chr14	60336392	60336393	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1165	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr10.38445963.-	chr10	38445963	38445964	-	0	NA	Intergenic	Intergenic	18636	NR_024524	100129055	Hs.148265	NR_024524		LOC100129055	-	cyclin Y-like pseudogene	pseudo
chr2.239047575.-	chr2	239047575	239047576	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-212	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chrX.15337007.-	chrX	15337007	15337008	-	0	NA	TTS (NM_002641)	TTS (NM_002641)	3261	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr10.59351220.+	chr10	59351220	59351221	+	0	NA	Intergenic	AluY|SINE|Alu	-286901	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr14.80915399.-	chr14	80915399	80915400	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218002	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr4.83719427.-	chr4	83719427	83719428	-	0	NA	"intron (NM_024906, intron 1 of 3)"	CpG	-583	NM_024906	79966	Hs.379191	NM_001037582	ENSG00000145284	SCD5	ACOD4|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
chr9.32897663.+	chr9	32897663	32897664	+	0	NA	Intergenic	AluY|SINE|Alu	103911	NR_036579	54840	Hs.20158	NM_001195248	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
chr9.135947027.-	chr9	135947027	135947028	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9662	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr9.11599709.+	chr9	11599709	11599710	+	0	NA	Intergenic	AluY|SINE|Alu	-986986	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.128328704.+	chr8	128328704	128328705	+	0	NA	Intergenic	Intergenic	-99153	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr2.136633765.+	chr2	136633765	136633766	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	282	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr13.114878045.-	chr13	114878045	114878046	-	0	NA	"intron (NM_007368, intron 1 of 23)"	MER5A|DNA|hAT-Charlie	-20050	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr6.126111897.-	chr6	126111897	126111898	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	12	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr6.170764148.-	chr6	170764148	170764149	-	0	NA	Intergenic	Intergenic	-98269	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	"proteasome (prosome, macropain) subunit, beta type, 1"	protein-coding
chr13.25744596.+	chr13	25744596	25744597	+	0	NA	"exon (NM_152704, exon 1 of 1)"	"exon (NM_152704, exon 1 of 1)"	1261	NM_199138	219287	Hs.528335	NM_152704	ENSG00000165566	AMER2	FAM123A	APC membrane recruitment protein 2	protein-coding
chr6.42510300.-	chr6	42510300	42510301	-	0	NA	Intergenic	AluY|SINE|Alu	21460	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr3.68753628.+	chr3	68753628	68753629	+	0	NA	Intergenic	AluSx3|SINE|Alu	228133	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr5.158523672.+	chr5	158523672	158523673	+	0	NA	"intron (NM_024007, intron 2 of 15)"	"intron (NM_024007, intron 2 of 15)"	3116	NM_024007	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
chr2.224599655.-	chr2	224599655	224599656	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102664	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr1.155035092.-	chr1	155035092	155035093	-	0	NA	"non-coding (NR_048579, exon 22 of 22)"	"non-coding (NR_048579, exon 22 of 22)"	1121	NM_182690	1945	Hs.639422	NM_005227	ENSG00000243364	EFNA4	EFL4|EPLG4|LERK4	ephrin-A4	protein-coding
chr6.99275764.+	chr6	99275764	99275765	+	0	NA	Intergenic	CpG	-6816	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
chr7.143078782.+	chr7	143078782	143078783	+	0	NA	"exon (NM_003461, exon 2 of 10)"	"exon (NM_003461, exon 2 of 10)"	422	NM_001010972	7791	Hs.490415	NM_001010972	ENSG00000159840	ZYX	ESP-2|HED-2	zyxin	protein-coding
chr1.54966380.-	chr1	54966380	54966381	-	0	NA	Intergenic	AluSq|SINE|Alu	47427	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr2.178129410.-	chr2	178129410	178129411	-	0	NA	promoter-TSS (NM_001145412)	promoter-TSS (NM_001145412)	-449	NM_006164	4780	Hs.744006	NM_001145412	ENSG00000116044	NFE2L2	NRF2	nuclear factor (erythroid-derived 2)-like 2	protein-coding
chr7.532163.-	chr7	532163	532164	-	0	NA	Intergenic	Intergenic	-27318	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr9.131525233.-	chr9	131525233	131525234	-	0	NA	"intron (NM_006336, intron 1 of 15)"	"intron (NM_006336, intron 1 of 15)"	-8980	NM_006336	10444	Hs.744180	NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	"zyg-11 related, cell cycle regulator"	protein-coding
chr2.8724804.+	chr2	8724804	8724805	+	0	NA	Intergenic	MIRc|SINE|MIR	-97309	NM_002166	3398	Hs.726053	NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	"inhibitor of DNA binding 2, dominant negative helix-loop-helix protein"	protein-coding
chr7.56888271.+	chr7	56888271	56888272	+	0	NA	Intergenic	Intergenic	61568	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr2.101959041.-	chr2	101959041	101959042	-	0	NA	Intergenic	Intergenic	-33129	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	miscRNA
chr8.123636955.-	chr8	123636955	123636956	-	0	NA	Intergenic	AluSx|SINE|Alu	156946	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr9.76965959.+	chr9	76965959	76965960	+	0	NA	Intergenic	AluSp|SINE|Alu	-146293	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr6.169648541.-	chr6	169648541	169648542	-	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	-5596	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr6.34004230.+	chr6	34004230	34004231	+	0	NA	"exon (NM_000841, exon 9 of 11)"	"exon (NM_000841, exon 9 of 11)"	-36402	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr17.36083151.+	chr17	36083151	36083152	+	0	NA	"intron (NM_001165923, intron 4 of 8)"	AluY|SINE|Alu	21945	NM_000458	6928	Hs.191144	NM_000458	ENSG00000108753	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
chr11.47619957.-	chr11	47619957	47619958	-	0	NA	Intergenic	AluY|SINE|Alu	3996	NM_031909	114900	Hs.662633	NM_031909	ENSG00000172247	C1QTNF4	CTRP4|ZACRP4	C1q and tumor necrosis factor related protein 4	protein-coding
chr17.31255423.+	chr17	31255423	31255424	+	0	NA	"intron (NM_001033504, intron 1 of 6)"	GC_rich|Low_complexity|Low_complexity	495	NM_001033504	26022	Hs.3447	NM_001033504	ENSG00000006042	TMEM98	-	transmembrane protein 98	protein-coding
chr4.989188.-	chr4	989188	989189	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1964	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr12.51681496.+	chr12	51681496	51681497	+	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	-17294	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr15.92290008.-	chr15	92290008	92290009	-	0	NA	Intergenic	AluY|SINE|Alu	106930	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr11.5315851.-	chr11	5315851	5315852	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7325	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr19.45524641.-	chr19	45524641	45524642	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17657	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr10.81652867.+	chr10	81652867	81652868	+	0	NA	Intergenic	Intergenic	-11787	NR_033857	100288974	Hs.733579	NR_033857	ENSG00000242600	LOC100288974	-	"BMS1 homolog, ribosome assembly protein (yeast) pseudogene"	pseudo
chr16.656952.+	chr16	656952	656953	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	"intron (NM_001172663, intron 2 of 6)"	16779	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr7.66607914.+	chr7	66607914	66607915	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28530	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr2.219563930.+	chr2	219563930	219563931	+	0	NA	"exon (NM_015690, exon 26 of 27)"	"exon (NM_015690, exon 26 of 27)"	-11638	NM_014640	9654	Hs.471405	NM_014640	ENSG00000135912	TTLL4	-	"tubulin tyrosine ligase-like family, member 4"	protein-coding
chr15.35343275.-	chr15	35343275	35343276	-	0	NA	Intergenic	AluY|SINE|Alu	62778	NM_014106	54989	Hs.5327	NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
chr13.111268292.-	chr13	111268292	111268293	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-361	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr10.76198282.-	chr10	76198282	76198283	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262035	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr3.31533163.+	chr3	31533163	31533164	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41328	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr11.1266536.+	chr11	1266536	1266537	+	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	22241	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr20.44686123.-	chr20	44686123	44686124	-	0	NA	"intron (NM_020708, intron 25 of 25)"	CpG-16716	-28302	NM_020708	57468	Hs.21413	NM_001134771	ENSG00000124140	SLC12A5	KCC2	"solute carrier family 12 (potassium/chloride transporter), member 5"	protein-coding
chr22.30781379.-	chr22	30781379	30781380	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	-1923	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr22.18249559.+	chr22	18249559	18249560	+	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	-2534	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr19.1229131.-	chr19	1229131	1229132	-	0	NA	TTS (NM_152769)	TTS (NM_152769)	-8859	NM_152769	255057	Hs.346575	NM_152769	ENSG00000099625	C19orf26	DOS	chromosome 19 open reading frame 26	protein-coding
chr11.9503847.-	chr11	9503847	9503848	-	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	-21335	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr14.97183878.-	chr14	97183878	97183879	-	0	NA	Intergenic	AluY|SINE|Alu	79806	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr11.915969.+	chr11	915969	915970	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-911	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr14.55033412.-	chr14	55033412	55033413	-	0	NA	promoter-TSS (NM_001161576)	promoter-TSS (NM_001161576)	918	NM_001161576	23034	Hs.733324	NM_001161576	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
chr13.81676514.-	chr13	81676514	81676515	-	0	NA	Intergenic	SVA_D|Other|Other	761428	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr2.55647018.+	chr2	55647018	55647019	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	39	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr7.21498079.+	chr7	21498079	21498080	+	0	NA	"intron (NM_003112, intron 3 of 5)"	AluSx1|SINE|Alu	30390	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr16.1075327.+	chr16	1075327	1075328	+	0	NA	Intergenic	Intergenic	43519	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
chr7.77045250.-	chr7	77045250	77045251	-	0	NA	"intron (NM_017439, intron 1 of 30)"	CpG	-467	NM_017439	54103	Hs.186649	NM_017439	ENSG00000186088	GSAP	PION	gamma-secretase activating protein	protein-coding
chr1.12040473.+	chr1	12040473	12040474	+	0	NA	"5' UTR (NM_014874, exon 1 of 19)"	"5' UTR (NM_014874, exon 1 of 19)"	235	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr11.61908746.+	chr11	61908746	61908747	+	0	NA	"intron (NM_020238, intron 10 of 17)"	"intron (NM_020238, intron 10 of 17)"	17301	NM_020238	3619	Hs.142179	NM_001040694	ENSG00000149503	INCENP	-	inner centromere protein antigens 135/155kDa	protein-coding
chr3.173023570.-	chr3	173023570	173023571	-	0	NA	Intergenic	AluYc|SINE|Alu	92674	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr9.139775626.-	chr9	139775626	139775627	-	0	NA	Intergenic	AluSp|SINE|Alu	5339	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr14.105158944.-	chr14	105158944	105158945	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-3001	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr8.96095112.+	chr8	96095112	96095113	+	0	NA	Intergenic	AluY|SINE|Alu	-9888	NR_037484	100500907		NR_037484	ENSG00000265256	MIR3150B	-	microRNA 3150b	miscRNA
chr19.54255093.+	chr19	54255093	54255094	+	0	NA	promoter-TSS (NR_030218)	promoter-TSS (NR_030218)	-558	NR_030218	574496		NR_030218	ENSG00000207992	MIR519A1	MIRN519A-1|MIRN519A1	microRNA 519a-1	miscRNA
chr3.48342768.-	chr3	48342768	48342769	-	0	NA	promoter-TSS (NM_005793)	promoter-TSS (NM_005793)	-80	NM_005793	10201	Hs.465558	NM_005793	ENSG00000172113	NME6	IPIA-ALPHA|NDK 6|NM23-H6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding
chr11.62551836.-	chr11	62551836	62551837	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3038	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr19.1010972.+	chr19	1010972	1010973	+	0	NA	"intron (NM_033420, intron 9 of 9)"	CpG-12171	10169	NM_001033026	91304	Hs.515003	NM_001033026	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
chr10.120515393.+	chr10	120515393	120515394	+	0	NA	promoter-TSS (NM_153810)	promoter-TSS (NM_153810)	-635	NM_153810	143384	Hs.420024	NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	"CDK2-associated, cullin domain 1"	protein-coding
chr21.42486454.+	chr21	42486454	42486455	+	0	NA	Intergenic	AluSx|SINE|Alu	33537	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	miscRNA
chr18.72193173.+	chr18	72193173	72193174	+	0	NA	Intergenic	LTR41|LTR|ERVL	-8519	NM_032649	84735	Hs.400613	NM_032649	ENSG00000150656	CNDP1	CN1|CPGL2|HsT2308	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding
chr2.136403840.+	chr2	136403840	136403841	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19127	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr17.8061005.-	chr17	8061005	8061006	-	0	NA	Intergenic	AluY|SINE|Alu	5252	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr17.78977920.+	chr17	78977920	78977921	+	0	NA	Intergenic	CpG	12279	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr9.719261.-	chr9	719261	719262	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12455	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr1.18735496.+	chr1	18735496	18735497	+	0	NA	Intergenic	Intergenic	-71928	NM_152375	127707	Hs.710799	NM_152375	ENSG00000179023	KLHDC7A	RP11-422P22.2	kelch domain containing 7A	protein-coding
chr9.77401541.-	chr9	77401541	77401542	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100722	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr5.79863385.-	chr5	79863385	79863386	-	0	NA	"intron (NM_001004441, intron 2 of 4)"	AluSq|SINE|Alu	-2919	NM_001004441	340120	Hs.519404	NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
chr11.113665986.-	chr11	113665986	113665987	-	0	NA	Intergenic	AluSx|SINE|Alu	-15468	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr13.111268082.-	chr13	111268082	111268083	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-151	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr6.8388523.-	chr6	8388523	8388524	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47271	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr17.19330398.+	chr17	19330398	19330399	+	0	NA	Intergenic	AluY|SINE|Alu	15907	NM_007148	7732	Hs.189482	NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
chr22.49447904.+	chr22	49447904	49447905	+	0	NA	Intergenic	CpG	185322	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr2.239047577.-	chr2	239047577	239047578	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-214	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr2.85554100.+	chr2	85554100	85554101	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1319	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr6.168395128.-	chr6	168395128	168395129	-	0	NA	Intergenic	AluSx|SINE|Alu	17509	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chrX.68956239.+	chrX	68956239	68956240	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120328	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr19.16137041.-	chr19	16137041	16137042	-	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	7482	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr2.1554802.+	chr2	1554802	1554803	+	0	NA	Intergenic	Intergenic	136622	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr10.69822263.+	chr10	69822263	69822264	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12840	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr12.133366744.+	chr12	133366744	133366745	+	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	-28293	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr9.77401556.+	chr9	77401556	77401557	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100707	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr5.159429722.-	chr5	159429722	159429723	-	0	NA	Intergenic	AluSz|SINE|Alu	6458	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr13.21644956.-	chr13	21644956	21644957	-	0	NA	Intergenic	AluSx|SINE|Alu	9234	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr2.198058468.-	chr2	198058468	198058469	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117053	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr3.184053717.-	chr3	184053717	184053718	-	0	NA	promoter-TSS (NM_001171093)	promoter-TSS (NM_001171093)	0	NM_001171093	131408	Hs.591307	NM_001171093	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	"family with sequence similarity 131, member A"	protein-coding
chr8.86574482.+	chr8	86574482	86574483	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	260	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr3.38106439.+	chr3	38106439	38106440	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25743	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr13.88877019.+	chr13	88877019	88877020	+	0	NA	Intergenic	AluY|SINE|Alu	-316065	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr5.693680.-	chr5	693680	693681	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	170	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr11.1122341.+	chr11	1122341	1122342	+	0	NA	Intergenic	Intergenic	47466	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chrX.67548237.-	chrX	67548237	67548238	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105062	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr2.87655667.+	chr2	87655667	87655668	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-99307	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr12.111714715.-	chr12	111714715	111714716	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92210	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr4.41362495.-	chr4	41362495	41362496	-	0	NA	promoter-TSS (NM_014988)	promoter-TSS (NM_014988)	309	NM_014988	22998	Hs.335163	NM_001112717	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
chr9.38829845.+	chr9	38829845	38829846	+	0	NA	Intergenic	AluY|SINE|Alu	208760	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr10.59009697.+	chr10	59009697	59009698	+	0	NA	Intergenic	LTR12C|LTR|ERV1	54622	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr16.89939795.-	chr16	89939795	89939796	-	0	NA	promoter-TSS (NM_014972)	promoter-TSS (NM_014972)	199	NM_014972	22980	Hs.415342	NM_014972	ENSG00000141002	TCF25	Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding
chr10.123791064.+	chr10	123791064	123791065	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42375	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chrX.53123311.-	chrX	53123311	53123312	-	0	NA	Intergenic	CpG	-11769	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr22.49691834.-	chr22	49691834	49691835	-	0	NA	Intergenic	Intergenic	-359356	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr12.118079841.-	chr12	118079841	118079842	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280234	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr20.54205928.+	chr20	54205928	54205929	+	0	NA	Intergenic	AluYk4|SINE|Alu	374600	NM_080617	140689	Hs.741877	NM_080617	ENSG00000054803	CBLN4	CBLNL1	cerebellin 4 precursor	protein-coding
chrX.153095510.-	chrX	153095510	153095511	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-493	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr2.72375648.+	chr2	72375648	72375649	+	0	NA	promoter-TSS (NM_019885)	promoter-TSS (NM_019885)	-685	NM_019885	56603	Hs.91546	NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	"cytochrome P450, family 26, subfamily B, polypeptide 1"	protein-coding
chrX.13062327.-	chrX	13062327	13062328	-	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	-590	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr3.188566637.-	chr3	188566637	188566638	-	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	323126	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr17.27717851.+	chr17	27717851	27717852	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-92	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr19.34008730.-	chr19	34008730	34008731	-	0	NA	"intron (NM_001166056, intron 1 of 12)"	AluSx3|SINE|Alu	-4069	NM_001166057	5184	Hs.36473	NM_000285	ENSG00000124299	PEPD	PROLIDASE	peptidase D	protein-coding
chr2.95885007.+	chr2	95885007	95885008	+	0	NA	Intergenic	AluY|SINE|Alu	53824	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr2.61595307.+	chr2	61595307	61595308	+	0	NA	"intron (NM_014709, intron 10 of 79)"	AluSc|SINE|Alu	49205	NR_003707	100124537	Hs.675825	NR_003707		SNORA70B	-	"small nucleolar RNA, H/ACA box 70B"	snoRNA
chr2.129040334.+	chr2	129040334	129040335	+	0	NA	"intron (NM_004807, intron 1 of 1)"	"intron (NM_004807, intron 1 of 1)"	35837	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr3.53118160.-	chr3	53118160	53118161	-	0	NA	Intergenic	Intergenic	38071	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr5.21484692.+	chr5	21484692	21484693	+	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	25103	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr11.69580011.+	chr11	69580011	69580012	+	0	NA	Intergenic	AluSp|SINE|Alu	10160	NM_002007	2249	Hs.1755	NM_002007	ENSG00000075388	FGF4	HBGF-4|HST|HST-1|HSTF1|K-FGF|KFGF	fibroblast growth factor 4	protein-coding
chr4.114652863.-	chr4	114652863	114652864	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30220	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr2.71562006.-	chr2	71562006	71562007	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3121	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr10.101300178.+	chr10	101300178	101300179	+	0	NA	Intergenic	CpG	7488	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr16.75241303.-	chr16	75241303	75241304	-	0	NA	promoter-TSS (NM_001025200)	promoter-TSS (NM_001025200)	231	NM_001025200	440387	Hs.632211	NM_001025200	ENSG00000168928	CTRB2	-	chymotrypsinogen B2	protein-coding
chr6.85382347.-	chr6	85382347	85382348	-	0	NA	Intergenic	AluYb8|SINE|Alu	-91607	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr1.85708425.+	chr1	85708425	85708426	+	0	NA	Intergenic	AluSc8|SINE|Alu	16930	NM_198077	148423	Hs.26226	NM_198077		C1orf52	RP11-234D19.1|gm117	chromosome 1 open reading frame 52	protein-coding
chr17.9197366.+	chr17	9197366	9197367	+	0	NA	"intron (NM_004853, intron 7 of 7)"	AluY|SINE|Alu	272507	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr15.90792652.+	chr15	90792652	90792653	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-112	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr5.133831473.-	chr5	133831473	133831474	-	0	NA	Intergenic	Intergenic	30325	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr2.10198564.+	chr2	10198564	10198565	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14192	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr7.157413800.+	chr7	157413800	157413801	+	0	NA	"intron (NM_130842, intron 14 of 21)"	"intron (NM_130842, intron 14 of 21)"	-46686	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr7.1004346.+	chr7	1004346	1004347	+	0	NA	TTS (NM_001031617)	TTS (NM_001031617)	-10057	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr2.227660826.+	chr2	227660826	227660827	+	0	NA	"exon (NM_005544, exon 1 of 2)"	"exon (NM_005544, exon 1 of 2)"	2680	NM_005544	3667	Hs.471508	NM_005544		IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
chr4.186162035.-	chr4	186162035	186162036	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30751	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr11.72526065.+	chr11	72526065	72526066	+	0	NA	"intron (NM_033388, intron 1 of 17)"	CpG	614	NM_033388	89849	Hs.653186	NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
chr12.32200124.+	chr12	32200124	32200125	+	0	NA	Intergenic	AluSz|SINE|Alu	-53322	NR_046944	100873778		NR_046944		RNU6-78	-	"RNA, U6 small nuclear 78"	snRNA
chr9.14830634.+	chr9	14830634	14830635	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51103	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr2.85999394.+	chr2	85999394	85999395	+	0	NA	"intron (NM_032827, intron 2 of 2)"	"intron (NM_032827, intron 2 of 2)"	18485	NM_032827	84913	Hs.135569	NM_032827		ATOH8	HATH6|bHLHa21	atonal homolog 8 (Drosophila)	protein-coding
chr2.90482957.-	chr2	90482957	90482958	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365018	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr9.111476105.+	chr9	111476105	111476106	+	0	NA	Intergenic	L1PA7|LINE|L1	142170	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr22.50959120.-	chr22	50959120	50959121	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4913	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr13.31735091.-	chr13	31735091	31735092	-	0	NA	"intron (NM_006644, intron 1 of 17)"	"intron (NM_006644, intron 1 of 17)"	-1026	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr11.68671256.+	chr11	68671256	68671257	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	47	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr1.161879500.-	chr1	161879500	161879501	-	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	-114144	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr15.89721770.+	chr15	89721770	89721771	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43152	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr3.49757471.-	chr3	49757471	49757472	-	0	NA	promoter-TSS (NM_198722)	promoter-TSS (NM_198722)	233	NM_198722	386724	Hs.567903	NM_198722	ENSG00000176020	AMIGO3	AMIGO-3	adhesion molecule with Ig-like domain 3	protein-coding
chr19.13497326.+	chr19	13497326	13497327	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119948	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr15.66993594.-	chr15	66993594	66993595	-	0	NA	Intergenic	CpG	1080	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr19.49086805.-	chr19	49086805	49086806	-	0	NA	"intron (NM_177973, intron 2 of 6)"	AluSx|SINE|Alu	-7812	NM_004605	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr14.54988005.+	chr14	54988005	54988006	+	0	NA	"intron (NM_006568, intron 1 of 5)"	AluSq2|SINE|Alu	11418	NM_006568	10668	Hs.59106	NM_006568	ENSG00000100532	CGRRF1	CGR19|RNF197	cell growth regulator with ring finger domain 1	protein-coding
chr19.35225095.+	chr19	35225095	35225096	+	0	NA	promoter-TSS (NM_001029997)	promoter-TSS (NM_001029997)	-385	NM_001029997	339318	Hs.720472	NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
chr17.12456636.+	chr17	12456636	12456637	+	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	3351	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr19.14156279.-	chr19	14156279	14156280	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13692	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr22.30115904.-	chr22	30115904	30115905	-	0	NA	promoter-TSS (NM_182527)	promoter-TSS (NM_182527)	440	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
chr3.14349524.+	chr3	14349524	14349525	+	0	NA	Intergenic	Intergenic	-94582	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr10.59080745.-	chr10	59080745	59080746	-	0	NA	Intergenic	AluY|SINE|Alu	16426	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr19.10400069.+	chr19	10400069	10400070	+	0	NA	promoter-TSS (NM_003259)	promoter-TSS (NM_003259)	-586	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr11.73020392.+	chr11	73020392	73020393	+	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	729	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr8.38831826.-	chr8	38831826	38831827	-	0	NA	TTS (NM_021623)	TTS (NM_021623)	-158	NM_153692	203100	Hs.661014	NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
chr1.10727950.+	chr1	10727950	10727951	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128783	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr9.14830643.+	chr9	14830643	14830644	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51112	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr12.34191955.+	chr12	34191955	34191956	+	0	NA	Intergenic	AluSp|SINE|Alu	16739	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr17.73625224.+	chr17	73625224	73625225	+	0	NA	"exon (NM_004259, exon 16 of 20)"	"exon (NM_004259, exon 16 of 20)"	-4290	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr6.17450427.+	chr6	17450427	17450428	+	0	NA	"intron (NM_006366, intron 3 of 12)"	AluY|SINE|Alu	56691	NM_006366	10486	Hs.132902	NM_006366	ENSG00000112186	CAP2	-	"CAP, adenylate cyclase-associated protein, 2 (yeast)"	protein-coding
chr10.101292639.+	chr10	101292639	101292640	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-51	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr19.4065776.-	chr19	4065776	4065777	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1040	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr17.8061038.+	chr17	8061038	8061039	+	0	NA	Intergenic	AluY|SINE|Alu	5255	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr12.133812246.+	chr12	133812246	133812247	+	0	NA	"intron (NM_001191054, intron 1 of 8)"	C-rich|Low_complexity|Low_complexity	176	NM_001191054	647589	Hs.703008	NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
chr8.67618031.+	chr8	67618031	67618032	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6622	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr8.43274650.-	chr8	43274650	43274651	-	0	NA	Intergenic	SVA_D|Other|Other	-127065	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr8.142657026.-	chr8	142657026	142657027	-	0	NA	Intergenic	Intergenic	139696	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr11.31560765.-	chr11	31560765	31560766	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29468	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr18.74140066.-	chr18	74140066	74140067	-	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	-67080	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr7.532150.+	chr7	532150	532151	+	0	NA	Intergenic	Intergenic	27331	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr1.6094749.+	chr1	6094749	6094750	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	401	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr6.18239256.-	chr6	18239256	18239257	-	0	NA	"intron (NM_001134709, intron 6 of 9)"	AluSp|SINE|Alu	-25543	NM_003472	7913	Hs.484813	NM_001134709	ENSG00000124795	DEK	D6S231E	DEK oncogene	protein-coding
chr12.8777863.-	chr12	8777863	8777864	-	0	NA	Intergenic	Intergenic	12421	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr17.16010351.-	chr17	16010351	16010352	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87602	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr4.166248575.+	chr4	166248575	166248576	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-243	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr4.5892150.-	chr4	5892150	5892151	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1835	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr11.9346813.-	chr11	9346813	9346814	-	0	NA	Intergenic	AluSx1|SINE|Alu	10498	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chr1.154967881.+	chr1	154967881	154967882	+	0	NA	Intergenic	AluSq2|SINE|Alu	1819	NM_018655	55891	Hs.272399	NM_018655	ENSG00000163352	LENEP	LEP503	lens epithelial protein	protein-coding
chr5.1824217.+	chr5	1824217	1824218	+	0	NA	Intergenic	AluSz6|SINE|Alu	22721	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr15.41674321.+	chr15	41674321	41674322	+	0	NA	Intergenic	SVA_F|Other|Other	20337	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr5.171395345.-	chr5	171395345	171395346	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38532	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr17.4453811.+	chr17	4453811	4453812	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4870	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr19.18057780.-	chr19	18057780	18057781	-	0	NA	Intergenic	AluSx|SINE|Alu	4331	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr11.62438133.-	chr11	62438133	62438134	-	0	NA	promoter-TSS (NM_001085372)	promoter-TSS (NM_001085372)	993	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chr10.43565994.-	chr10	43565994	43565995	-	0	NA	Intergenic	Intergenic	6523	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr2.72441541.+	chr2	72441541	72441542	+	0	NA	"intron (NM_015189, intron 20 of 21)"	AluY|SINE|Alu	-66578	NM_019885	56603	Hs.91546	NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	"cytochrome P450, family 26, subfamily B, polypeptide 1"	protein-coding
chr13.50222306.-	chr13	50222306	50222307	-	0	NA	Intergenic	AluY|SINE|Alu	-19871	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr3.49757479.-	chr3	49757479	49757480	-	0	NA	promoter-TSS (NM_198722)	promoter-TSS (NM_198722)	241	NM_198722	386724	Hs.567903	NM_198722	ENSG00000176020	AMIGO3	AMIGO-3	adhesion molecule with Ig-like domain 3	protein-coding
chr15.63892631.-	chr15	63892631	63892632	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-395	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr6.12012467.+	chr6	12012467	12012468	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-257	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr10.127582105.-	chr10	127582105	127582106	-	0	NA	Intergenic	AluY|SINE|Alu	3003	NM_145235	92565	Hs.352591	NM_145235	ENSG00000203780	FANK1	-	fibronectin type III and ankyrin repeat domains 1	protein-coding
chr4.27215132.-	chr4	27215132	27215133	-	0	NA	Intergenic	AluY|SINE|Alu	-352819	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr3.128194218.-	chr3	128194218	128194219	-	0	NA	Intergenic	Intergenic	8127	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr21.47403591.-	chr21	47403591	47403592	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1928	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr13.50701748.-	chr13	50701748	50701749	-	0	NA	Intergenic	CpG-6444	2071	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr21.44277456.-	chr21	44277456	44277457	-	0	NA	"intron (NM_001260474, intron 6 of 10)"	HAL1|LINE|L1	-21929	NM_001260477	10785	Hs.711744	NM_001260474	ENSG00000160193	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
chr4.163164003.-	chr4	163164003	163164004	-	0	NA	Intergenic	AluY|SINE|Alu	78817	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr12.116724232.-	chr12	116724232	116724233	-	0	NA	Intergenic	AluY|SINE|Alu	9241	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr5.178657966.+	chr5	178657966	178657967	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114465	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr17.65989824.+	chr17	65989824	65989825	+	0	NA	promoter-TSS (NM_181656)	promoter-TSS (NM_181656)	-59	NM_181656	284018	Hs.90790	NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
chr3.8635228.+	chr3	8635228	8635229	+	0	NA	Intergenic	Intergenic	21760	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr2.223725608.+	chr2	223725608	223725609	+	0	NA	promoter-TSS (NM_004457)	promoter-TSS (NM_004457)	-124	NM_004457	2181	Hs.655772	NM_004457		ACSL3	ACS3|FACL3|PRO2194	acyl-CoA synthetase long-chain family member 3	protein-coding
chr17.2311349.+	chr17	2311349	2311350	+	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	-7091	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr5.43587991.+	chr5	43587991	43587992	+	0	NA	"intron (NR_073113, intron 1 of 2)"	AluY|SINE|Alu	-14800	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
chr2.99878867.-	chr2	99878867	99878868	-	0	NA	Intergenic	AluY|SINE|Alu	7297	NM_175735	254773	Hs.436468	NM_175735	ENSG00000185674	LYG2	LYGH	lysozyme G-like 2	protein-coding
chr7.1542306.-	chr7	1542306	1542307	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1712	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr10.76198165.-	chr10	76198165	76198166	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-261918	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr22.46522754.-	chr22	46522754	46522755	-	0	NA	Intergenic	Intergenic	-13188	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr1.78388488.+	chr1	78388488	78388489	+	0	NA	"intron (NM_144573, intron 5 of 12)"	AluY|SINE|Alu	34288	NM_144573	91624	Hs.734666	NM_001172309	ENSG00000162614	NEXN	CMH20|NELIN	nexilin (F actin binding protein)	protein-coding
chr9.861782.+	chr9	861782	861783	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20092	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr7.55379486.+	chr7	55379486	55379487	+	0	NA	Intergenic	SVA_D|Other|Other	-53655	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr13.108871185.+	chr13	108871185	108871186	+	0	NA	promoter-TSS (NM_001098268)	promoter-TSS (NM_001098268)	422	NM_032859	84945	Hs.183528	NM_032859	ENSG00000139826	ABHD13	BEM46L1|C13orf6|RP11-153I24.2|bA153I24.2	abhydrolase domain containing 13	protein-coding
chr2.101924967.+	chr2	101924967	101924968	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	211	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr14.24046445.+	chr14	24046445	24046446	+	0	NA	"exon (NM_001146028, exon 2 of 6)"	"exon (NM_001146028, exon 2 of 6)"	1564	NM_001146028	84502	Hs.597841	NM_001146028	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
chr19.21734806.-	chr19	21734806	21734807	-	0	NA	Intergenic	SVA_D|Other|Other	-46369	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr3.109059738.+	chr3	109059738	109059739	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3319	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr3.164852034.-	chr3	164852034	164852035	-	0	NA	Intergenic	AluY|SINE|Alu	55751	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr17.8061040.+	chr17	8061040	8061041	+	0	NA	Intergenic	AluY|SINE|Alu	5253	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chrM.117.+	chrM	117	118	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr5.130576906.-	chr5	130576906	130576907	-	0	NA	Intergenic	AluY|SINE|Alu	22796	NM_020240	56990	Hs.713870	NM_001038702	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
chr2.101214231.-	chr2	101214231	101214232	-	0	NA	Intergenic	MER8|DNA|TcMar-Tigger	-34813	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr10.22629590.+	chr10	22629590	22629591	+	0	NA	Intergenic	CpG	-4784	NM_001253855	9576	Hs.655170	NM_001253854	ENSG00000077327	SPAG6	Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
chr15.76627360.+	chr15	76627360	76627361	+	0	NA	Intergenic	AluSg|SINE|Alu	-1787	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr18.11867629.-	chr18	11867629	11867630	-	0	NA	"intron (NM_182978, intron 8 of 11)"	AluYk4|SINE|Alu	-10192	NM_001261444	2774	Hs.741448	NM_002071	ENSG00000141404	GNAL	-	"guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type"	protein-coding
chr21.27107300.+	chr21	27107300	27107301	+	0	NA	promoter-TSS (NM_002040)	promoter-TSS (NM_002040)	-29	NM_002040	2551	Hs.473470	NM_001197297	ENSG00000154727	GABPA	E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07	"GA binding protein transcription factor, alpha subunit 60kDa"	protein-coding
chr16.8967983.+	chr16	8967983	8967984	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5120	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr1.2979835.-	chr1	2979835	2979836	-	0	NA	TTS (NR_024371)	TTS (NR_024371)	-4454	NR_024371	440556	Hs.531041	NM_001004337	ENSG00000177133	FLJ42875	-	uncharacterized LOC440556	miscRNA
chr20.62111463.+	chr20	62111463	62111464	+	0	NA	Intergenic	CpG	-7470	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr17.18785212.+	chr17	18785212	18785213	+	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	16430	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr4.114652889.-	chr4	114652889	114652890	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30194	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr11.130241744.-	chr11	130241744	130241745	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56795	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr12.26123294.-	chr12	26123294	26123295	-	0	NA	"intron (NM_001164748, intron 1 of 4)"	"intron (NM_001164748, intron 1 of 4)"	3394	NM_001164747	11228	Hs.696433	NM_001164746	ENSG00000123094	RASSF8	C12orf2|HOJ1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding
chr3.22843319.+	chr3	22843319	22843320	+	0	NA	Intergenic	L1PA2|LINE|L1	-401465	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr12.112407462.+	chr12	112407462	112407463	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43561	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr5.159429717.+	chr5	159429717	159429718	+	0	NA	Intergenic	AluSz|SINE|Alu	-6463	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr16.30960865.+	chr16	30960865	30960866	+	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	460	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr16.70207300.+	chr16	70207300	70207301	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-628	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr7.91516773.+	chr7	91516773	91516774	+	0	NA	Intergenic	SVA_A|Other|Other	-6757	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr9.133922851.+	chr9	133922851	133922852	+	0	NA	"intron (NM_006059, intron 8 of 27)"	AluSx1|SINE|Alu	38347	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	"laminin, gamma 3"	protein-coding
chr2.175518279.+	chr2	175518279	175518280	+	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	-18972	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr1.113385407.-	chr1	113385407	113385408	-	0	NA	Intergenic	AluSx|SINE|Alu	80565	NR_002796	246182	Hs.647691	NR_002796		AKR7A2P1	AFARP1	"aldo-keto reductase family 7, member A2 pseudogene 1"	pseudo
chr15.91599303.+	chr15	91599303	91599304	+	0	NA	Intergenic	Intergenic	-33470	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr18.12390626.-	chr18	12390626	12390627	-	0	NA	Intergenic	AluSx1|SINE|Alu	13351	NM_006796	10939	Hs.726355	NM_006796	ENSG00000141385	AFG3L2	SCA28|SPAX5	AFG3 ATPase family member 3-like 2 (S. cerevisiae)	protein-coding
chr19.14589195.-	chr19	14589195	14589196	-	0	NA	"3' UTR (NM_202468, exon 8 of 8)"	"3' UTR (NM_202468, exon 8 of 8)"	3021	NM_000955	5731	Hs.159360	NM_000955	ENSG00000160951	PTGER1	EP1	"prostaglandin E receptor 1 (subtype EP1), 42kDa"	protein-coding
chr15.100080041.-	chr15	100080041	100080042	-	0	NA	Intergenic	AluSq2|SINE|Alu	26092	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr4.110600280.-	chr4	110600280	110600281	-	0	NA	"intron (NM_017918, intron 4 of 7)"	SVA_A|Other|Other	-24349	NM_001226	839	Hs.654616	NM_001226	ENSG00000138794	CASP6	MCH2	"caspase 6, apoptosis-related cysteine peptidase"	protein-coding
chr15.28492765.-	chr15	28492765	28492766	-	0	NA	"intron (NM_004667, intron 21 of 92)"	AluSq2|SINE|Alu	-74533	NM_004667	8924	Hs.741019	NM_004667	ENSG00000128731	HERC2	D15F37S1|SHEP1|jdf2|p528	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding
chr4.65357185.-	chr4	65357185	65357186	-	0	NA	Intergenic	AluSc|SINE|Alu	82007	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr7.5557973.+	chr7	5557973	5557974	+	0	NA	Intergenic	AluYc|SINE|Alu	-4574	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr7.150948858.-	chr7	150948858	150948859	-	0	NA	"intron (NM_001003802, intron 2 of 13)"	CpG	3109	NM_001003801	6604	Hs.647067	NM_001003801	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3"	protein-coding
chr2.229496732.-	chr2	229496732	229496733	-	0	NA	Intergenic	AluYc|SINE|Alu	450371	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr7.64493635.-	chr7	64493635	64493636	-	0	NA	Intergenic	SVA_C|Other|Other	5097	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr20.52098549.+	chr20	52098549	52098550	+	0	NA	"intron (NM_173485, intron 2 of 2)"	AluSp|SINE|Alu	101087	NM_006526	7764	Hs.711564	NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
chr6.126100217.+	chr6	126100217	126100218	+	0	NA	Intergenic	AluY|SINE|Alu	-2090	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chrX.689445.-	chrX	689445	689446	-	0	NA	Intergenic	Intergenic	-104366	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr9.425348.+	chr9	425348	425349	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44946	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr6.160985676.+	chr6	160985676	160985677	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53520	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr1.142618975.-	chr1	142618975	142618976	-	0	NA	Intergenic	CpG	-94630	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	"ankyrin repeat domain 20 family, member A12, pseudogene"	pseudo
chrX.21676579.-	chrX	21676579	21676580	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	131	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr4.2420662.-	chr4	2420662	2420663	-	0	NA	promoter-TSS (NM_001172656)	promoter-TSS (NM_001172656)	39	NM_001193282	402160	Hs.443116	NM_001193282		LOC402160	-	uncharacterized LOC402160	protein-coding
chr3.8721275.+	chr3	8721275	8721276	+	0	NA	Intergenic	Intergenic	-27511	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr20.54205930.-	chr20	54205930	54205931	-	0	NA	Intergenic	AluYk4|SINE|Alu	-374598	NM_080617	140689	Hs.741877	NM_080617	ENSG00000054803	CBLN4	CBLNL1	cerebellin 4 precursor	protein-coding
chr17.809966.-	chr17	809966	809967	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42615	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr4.55034956.+	chr4	55034956	55034957	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60308	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr7.73456644.+	chr7	73456644	73456645	+	0	NA	"intron (NM_001081753, intron 5 of 30)"	AluJb|SINE|Alu	14217	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr22.42027286.+	chr22	42027286	42027287	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9991	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr11.71202794.+	chr11	71202794	71202795	+	0	NA	"intron (NM_018161, intron 17 of 20)"	"intron (NM_018161, intron 17 of 20)"	-35519	NM_001012503	440050	Hs.710675	NM_001012503	ENSG00000244411	KRTAP5-7	KRTAP5-3|KRTAP5.7	keratin associated protein 5-7	protein-coding
chr15.26638786.-	chr15	26638786	26638787	-	0	NA	Intergenic	Intergenic	-235451	NM_001191321	2562	Hs.302352	NM_000814	ENSG00000166206	GABRB3	ECA5	"gamma-aminobutyric acid (GABA) A receptor, beta 3"	protein-coding
chrX.53123312.+	chrX	53123312	53123313	+	0	NA	Intergenic	CpG	11770	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr6.1610282.+	chr6	1610282	1610283	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-399	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr7.36192815.-	chr7	36192815	36192816	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	21	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr19.13936506.+	chr19	13936506	13936507	+	0	NA	"exon (NM_023072, exon 11 of 13)"	"exon (NM_023072, exon 11 of 13)"	10597	NR_036515	284454	Hs.436426	NR_036515	ENSG00000267519	LOC284454	-	uncharacterized LOC284454	miscRNA
chr11.66102087.+	chr11	66102087	66102088	+	0	NA	"exon (NM_004292, exon 6 of 10)"	"exon (NM_004292, exon 6 of 10)"	1913	NM_004292	9610	Hs.1030	NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
chr11.78614596.+	chr11	78614596	78614597	+	0	NA	"intron (NM_001098816, intron 6 of 33)"	CpG-4638	-328687	NM_024678	79731	Hs.503389	NM_001243251	ENSG00000137513	NARS2	SLM5|asnRS	"asparaginyl-tRNA synthetase 2, mitochondrial (putative)"	protein-coding
chr19.2491351.-	chr19	2491351	2491352	-	0	NA	Intergenic	Intergenic	-15228	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr17.79427793.-	chr17	79427793	79427794	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9579	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr17.76798324.-	chr17	76798324	76798325	-	0	NA	"intron (NM_025090, intron 17 of 19)"	CpG	19948	NM_004762	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
chr3.49711693.-	chr3	49711693	49711694	-	0	NA	"5' UTR (NM_001640, exon 1 of 22)"	"5' UTR (NM_001640, exon 1 of 22)"	-258	NM_001640	327	Hs.517969	NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	N-acylaminoacyl-peptide hydrolase	protein-coding
chr5.43588005.+	chr5	43588005	43588006	+	0	NA	"intron (NR_073113, intron 1 of 2)"	AluY|SINE|Alu	-14786	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
chr4.990998.+	chr4	990998	990999	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-3774	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr19.19594695.-	chr19	19594695	19594696	-	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	-31774	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr6.34857486.-	chr6	34857486	34857487	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-448	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr11.86869706.-	chr11	86869706	86869707	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-120820	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr6.108315259.+	chr6	108315259	108315260	+	0	NA	Intergenic	AluSz|SINE|Alu	-35777	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr8.27695157.+	chr8	27695157	27695158	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	192	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr9.15428381.+	chr9	15428381	15428382	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5599	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr14.24014038.-	chr14	24014038	24014039	-	0	NA	"intron (NM_033400, intron 1 of 9)"	"intron (NM_033400, intron 1 of 9)"	-6820	NM_033400	85446	Hs.508937	NM_033400	ENSG00000136367	ZFHX2	ZFH-5|ZNF409	zinc finger homeobox 2	protein-coding
chr2.96149442.-	chr2	96149442	96149443	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1037	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr7.55379515.-	chr7	55379515	55379516	-	0	NA	Intergenic	SVA_D|Other|Other	53626	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr19.21734843.-	chr19	21734843	21734844	-	0	NA	Intergenic	SVA_D|Other|Other	-46406	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr12.111481382.-	chr12	111481382	111481383	-	0	NA	"intron (NM_015267, intron 1 of 21)"	AluSz|SINE|Alu	-9554	NM_015267	23316	Hs.124953	NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2	cut-like homeobox 2	protein-coding
chr5.11072959.-	chr5	11072959	11072960	-	0	NA	"intron (NM_001332, intron 16 of 21)"	"intron (NM_001332, intron 16 of 21)"	311572	NM_004394	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death-associated protein	protein-coding
chr4.5981993.+	chr4	5981993	5981994	+	0	NA	Intergenic	Intergenic	-56938	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	-	microRNA 378d-1	miscRNA
chr10.6985581.-	chr10	6985581	6985582	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164021	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr1.12040471.+	chr1	12040471	12040472	+	0	NA	"5' UTR (NM_014874, exon 1 of 19)"	"5' UTR (NM_014874, exon 1 of 19)"	233	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr2.39267414.+	chr2	39267414	39267415	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79929	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr14.77227718.-	chr14	77227718	77227719	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	517	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr1.31248136.-	chr1	31248136	31248137	-	0	NA	Intergenic	Intergenic	17453	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr10.3594341.-	chr10	3594341	3594342	-	0	NA	Intergenic	Intergenic	-233132	NM_001160125	1316	Hs.709396	NM_001160124	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
chr12.8057426.-	chr12	8057426	8057427	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31466	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr8.609787.+	chr8	609787	609788	+	0	NA	Intergenic	Intergenic	71439	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr16.8967982.+	chr16	8967982	8967983	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5119	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr8.104115251.+	chr8	104115251	104115252	+	0	NA	Intergenic	AluSp|SINE|Alu	-37670	NM_024812	79870	Hs.533446	NM_001024372	ENSG00000164929	BAALC	-	"brain and acute leukemia, cytoplasmic"	protein-coding
chr10.16562154.-	chr10	16562154	16562155	-	0	NA	"intron (NM_001010908, intron 1 of 1)"	CpG	-1850	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	"complement component 1, q subcomponent-like 3"	protein-coding
chr3.68753621.+	chr3	68753621	68753622	+	0	NA	Intergenic	AluSx3|SINE|Alu	228140	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr2.48784480.-	chr2	48784480	48784481	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11679	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr10.122148845.+	chr10	122148845	122148846	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67621	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr16.12223890.-	chr16	12223890	12223891	-	0	NA	"intron (NM_032167, intron 13 of 20)"	AluSc8|SINE|Alu	-153288	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr13.100409997.+	chr13	100409997	100409998	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluSq|SINE|Alu	114684	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr7.1474635.-	chr7	1474635	1474636	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24474	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr18.79551.-	chr18	79551	79552	-	0	NA	Intergenic	Intergenic	29514	NR_033770	727758	Hs.585843	NR_033770		ROCK1P1	-	"Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1"	pseudo
chr9.74827298.-	chr9	74827298	74827299	-	0	NA	"intron (NM_001242505, intron 4 of 15)"	AluY|SINE|Alu	-63031	NM_004293	9615	Hs.494163	NM_001242505	ENSG00000119125	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
chr6.8000143.+	chr6	8000143	8000144	+	0	NA	"intron (NR_037616, intron 4 of 12)"	AluSc8|SINE|Alu	13808	NR_027712	206426	Hs.676966	NR_027712		PIP5K1P1	-	"phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1"	pseudo
chr9.108007063.-	chr9	108007063	108007064	-	0	NA	"5' UTR (NM_080546, exon 1 of 16)"	"5' UTR (NM_080546, exon 1 of 16)"	-134	NM_080546	23446	Hs.573495	NM_022109		SLC44A1	CD92|CDW92|CHTL1|CTL1|RP11-287A8.1	"solute carrier family 44, member 1"	protein-coding
chr20.33290381.-	chr20	33290381	33290382	-	0	NA	Intergenic	AluY|SINE|Alu	1767	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr2.16671130.-	chr2	16671130	16671131	-	0	NA	Intergenic	AluY|SINE|Alu	-176004	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	"family with sequence similarity 49, member A"	protein-coding
chr2.62725710.+	chr2	62725710	62725711	+	0	NA	Intergenic	AluYa5|SINE|Alu	7894	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr19.17219021.+	chr19	17219021	17219022	+	0	NA	"intron (NM_004145, intron 2 of 39)"	"intron (NM_004145, intron 2 of 39)"	32430	NM_004145	4650	Hs.736097	NM_001130065	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
chr7.48129257.-	chr7	48129257	48129258	-	0	NA	"intron (NM_003364, intron 1 of 8)"	CpG	-511	NM_003364	7378	Hs.488240	NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
chr17.79430734.-	chr17	79430734	79430735	-	0	NA	"exon (NM_001080519, exon 27 of 27)"	"exon (NM_001080519, exon 27 of 27)"	12520	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr7.55955118.+	chr7	55955118	55955119	+	0	NA	Intergenic	CpG	-24636	NM_207366	346288	Hs.453629	NM_207366	ENSG00000154997	Sep-14	-	septin 14	protein-coding
chr2.241813814.+	chr2	241813814	241813815	+	0	NA	"intron (NM_000030, intron 6 of 10)"	"intron (NM_000030, intron 6 of 10)"	5652	NM_000030	189	Hs.144567	NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6	alanine-glyoxylate aminotransferase	protein-coding
chr16.88772892.+	chr16	88772892	88772893	+	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	1	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr1.31248101.-	chr1	31248101	31248102	-	0	NA	Intergenic	Intergenic	17418	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr19.45430411.+	chr19	45430411	45430412	+	0	NA	"intron (NR_028413, intron 1 of 2)"	"intron (NR_028413, intron 1 of 2)"	351	NR_028414	342	Hs.729930	NR_028412	ENSG00000214855	APOC1P1	-	apolipoprotein C-I pseudogene 1	pseudo
chr9.139780644.+	chr9	139780644	139780645	+	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	-321	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr16.31448990.-	chr16	31448990	31448991	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5358	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr6.43131186.+	chr6	43131186	43131187	+	0	NA	Intergenic	AluY|SINE|Alu	-7734	NM_003131	6722	Hs.520140	NM_003131	ENSG00000112658	SRF	MCM1	serum response factor (c-fos serum response element-binding transcription factor)	protein-coding
chr4.54204857.+	chr4	54204857	54204858	+	0	NA	"intron (NM_152540, intron 2 of 8)"	AluYa5|SINE|Alu	27385	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr9.12352796.-	chr9	12352796	12352797	-	0	NA	Intergenic	AluY|SINE|Alu	340590	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr22.37641452.-	chr22	37641452	37641453	-	0	NA	Intergenic	Intergenic	1147	NM_002872	5880	Hs.517601	NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022	"ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)"	protein-coding
chr17.47811773.+	chr17	47811773	47811774	+	0	NA	"intron (NM_030802, intron 1 of 7)"	AluYk4|SINE|Alu	-26491	NM_005827	10237	Hs.154073	NM_005827		SLC35B1	UGTREL1	"solute carrier family 35, member B1"	protein-coding
chr18.51752453.+	chr18	51752453	51752454	+	0	NA	Intergenic	AluY|SINE|Alu	-1295	NM_015832	8932	Hs.25674	NM_003927	ENSG00000134046	MBD2	DMTase|NY-CO-41	methyl-CpG binding domain protein 2	protein-coding
chr7.150812708.+	chr7	150812708	150812709	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28882	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr20.61663934.+	chr20	61663934	61663935	+	0	NA	"intron (NR_033370, intron 1 of 4)"	"intron (NR_033370, intron 1 of 4)"	4446	NR_028295	100144596	Hs.187773	NR_028295		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	miscRNA
chr1.227498657.-	chr1	227498657	227498658	-	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	-7169	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chr19.21789913.+	chr19	21789913	21789914	+	0	NA	Intergenic	SVA_D|Other|Other	101476	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr1.218165381.+	chr1	218165381	218165382	+	0	NA	Intergenic	AluSq|SINE|Alu	99139	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr3.46792422.+	chr3	46792422	46792423	+	0	NA	Intergenic	CpG	-6177	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr2.121244098.+	chr2	121244098	121244099	+	0	NA	Intergenic	Intergenic	-20173	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr6.8388475.+	chr6	8388475	8388476	+	0	NA	Intergenic	LTR9|LTR|ERV1	47319	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr15.76627289.+	chr15	76627289	76627290	+	0	NA	Intergenic	AluSg|SINE|Alu	-1858	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr1.215227195.-	chr1	215227195	215227196	-	0	NA	"intron (NM_001017424, intron 1 of 6)"	AluSz6|SINE|Alu	29365	NM_001017425	3776	Hs.497745	NM_001017424	ENSG00000082482	KCNK2	K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e	"potassium channel, subfamily K, member 2"	protein-coding
chr20.57556412.-	chr20	57556412	57556413	-	0	NA	"exon (NM_198976, exon 1 of 15)"	"exon (NM_198976, exon 1 of 15)"	-149	NM_198976	51497	Hs.517148	NM_198976	ENSG00000101158	NELFCD	NELF-C|NELF-D|TH1|TH1L	negative elongation factor complex member C/D	protein-coding
chr18.24443280.-	chr18	24443280	24443281	-	0	NA	promoter-TSS (NM_004028)	promoter-TSS (NM_004028)	705	NM_004028	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	HMIWC2|MIWC	aquaporin 4	protein-coding
chr16.1959153.+	chr16	1959153	1959154	+	0	NA	Intergenic	Intergenic	9078	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr2.198058474.+	chr2	198058474	198058475	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117047	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr14.97183867.+	chr14	97183867	97183868	+	0	NA	Intergenic	AluY|SINE|Alu	-79817	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr20.50013455.+	chr20	50013455	50013456	+	0	NA	"intron (NM_173091, intron 9 of 9)"	"intron (NM_173091, intron 9 of 9)"	56059	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	miscRNA
chr1.32122078.+	chr1	32122078	32122079	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11240	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr7.56143764.-	chr7	56143764	56143765	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11847	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr3.78390299.-	chr3	78390299	78390300	-	0	NA	Intergenic	AluY|SINE|Alu	-678310	NM_001145845	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr5.694049.+	chr5	694049	694050	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-539	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr19.8408087.+	chr19	8408087	8408088	+	0	NA	promoter-TSS (NM_198471)	promoter-TSS (NM_198471)	59	NM_198471	256949	Hs.322473	NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
chr17.17686696.+	chr17	17686696	17686697	+	0	NA	"intron (NM_030665, intron 2 of 5)"	CpG	-3853	NR_024007	140771	Hs.352643	NM_144774	ENSG00000226746	SMCR5	NCRNA00034	"Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)"	miscRNA
chr13.20343661.-	chr13	20343661	20343662	-	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	-13498	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr2.228067287.+	chr2	228067287	228067288	+	0	NA	"intron (NM_000091, intron 1 of 51)"	AluYk4|SINE|Alu	38006	NM_000091	1285	Hs.570065	NM_000091	ENSG00000169031	COL4A3	-	"collagen, type IV, alpha 3 (Goodpasture antigen)"	protein-coding
chr2.4156380.+	chr2	4156380	4156381	+	0	NA	Intergenic	CpG	-134758	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr16.33730701.-	chr16	33730701	33730702	-	0	NA	Intergenic	CpG	167458	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76	-	"RNA, U6 small nuclear 76"	snRNA
chr17.45078483.+	chr17	45078483	45078484	+	0	NA	Intergenic	AluSg4|SINE|Alu	-21869	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr17.18179028.+	chr17	18179028	18179029	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14604	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr1.10727896.+	chr1	10727896	10727897	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128837	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr20.61925838.-	chr20	61925838	61925839	-	0	NA	"intron (NM_020882, intron 1 of 35)"	"intron (NM_020882, intron 1 of 35)"	-1300	NM_020882	57642	Hs.271285	NM_020882	ENSG00000101203	COL20A1	bA261N11.4	"collagen, type XX, alpha 1"	protein-coding
chr13.96681163.-	chr13	96681163	96681164	-	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	-24573	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr1.171662962.+	chr1	171662962	171662963	+	0	NA	Intergenic	SVA_C|Other|Other	-41189	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr1.225619174.+	chr1	225619174	225619175	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2617	NM_194442	3930	Hs.735694	NM_002296	ENSG00000143815	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
chr20.32914479.+	chr20	32914479	32914480	+	0	NA	Intergenic	AluSx|SINE|Alu	-14871	NM_001161766	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr9.105850371.-	chr9	105850371	105850372	-	0	NA	Intergenic	AluYc|SINE|Alu	-92778	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr2.183551412.-	chr2	183551412	183551413	-	0	NA	Intergenic	L1PA5|LINE|L1	29356	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chrX.153600239.+	chrX	153600239	153600240	+	0	NA	"intron (NM_001456, intron 1 of 46)"	CpG-28471	2767	NM_001110556	2316	Hs.195464	NM_001110556	ENSG00000196924	FLNA	ABP-280|ABPX|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	"filamin A, alpha"	protein-coding
chr12.31575356.+	chr12	31575356	31575357	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96197	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr11.1412034.+	chr11	1412034	1412035	+	0	NA	"intron (NM_003957, intron 1 of 19)"	CpG-3728	905	NR_046331	9024	Hs.170819	NM_001256627	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|STK29	BR serine/threonine kinase 2	protein-coding
chr9.35728485.+	chr9	35728485	35728486	+	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	-3832	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr12.131509509.-	chr12	131509509	131509510	-	0	NA	"intron (NM_198827, intron 13 of 24)"	"intron (NM_198827, intron 13 of 24)"	-71057	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr20.32914498.+	chr20	32914498	32914499	+	0	NA	Intergenic	AluSx|SINE|Alu	-14890	NM_001161766	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr9.16855829.+	chr9	16855829	16855830	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	14957	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr17.7197922.-	chr17	7197922	7197923	-	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	46	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr3.9398174.+	chr3	9398174	9398175	+	0	NA	Intergenic	AluY|SINE|Alu	-6543	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr7.747703.-	chr7	747703	747704	-	0	NA	"intron (NM_002735, intron 2 of 10)"	MLT1C|LTR|ERVL-MaLR	-4458	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr16.88841804.-	chr16	88841804	88841805	-	0	NA	"intron (NM_001142864, intron 1 of 50)"	"intron (NM_001142864, intron 1 of 50)"	-9568	NM_001142864	9780	Hs.592074	NM_001142864	ENSG00000103335	PIEZO1	FAM38A|Mib	piezo-type mechanosensitive ion channel component 1	protein-coding
chr4.77348122.-	chr4	77348122	77348123	-	0	NA	Intergenic	AluY|SINE|Alu	8131	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr3.32863315.-	chr3	32863315	32863316	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3805	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr16.3203699.-	chr16	3203699	3203700	-	0	NA	Intergenic	AluSg|SINE|Alu	-18565	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr10.1102788.-	chr10	1102788	1102789	-	0	NA	promoter-TSS (NM_014023)	promoter-TSS (NM_014023)	-12	NM_014023	22884	Hs.188495	NM_014023	ENSG00000047056	WDR37	RP11-529L18.2	WD repeat domain 37	protein-coding
chr3.47744578.-	chr3	47744578	47744579	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78827	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr3.115832428.+	chr3	115832428	115832429	+	0	NA	"intron (NM_002338, intron 1 of 6)"	AluYa5|SINE|Alu	331957	NM_002338	4045	Hs.723683	NM_002338		LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
chr6.168219494.-	chr6	168219494	168219495	-	0	NA	Intergenic	AluSp|SINE|Alu	-7982	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr2.208031227.-	chr2	208031227	208031228	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	317	NR_073108	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr7.124427328.+	chr7	124427328	124427329	+	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	3536	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr19.23432268.-	chr19	23432268	23432269	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-904	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr7.5396298.-	chr7	5396298	5396299	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	-66879	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr15.90792662.+	chr15	90792662	90792663	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-102	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr6.15241163.-	chr6	15241163	15241164	-	0	NA	Intergenic	AluSp|SINE|Alu	5043	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr1.33430195.+	chr1	33430195	33430196	+	0	NA	promoter-TSS (NM_001127361)	promoter-TSS (NM_001127361)	91	NM_153341	127544	Hs.591504	NM_001127361	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
chr10.135104764.-	chr10	135104764	135104765	-	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	14357	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr17.45349540.+	chr17	45349540	45349541	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18332	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr17.11197457.+	chr17	11197457	11197458	+	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc|SINE|Alu	52717	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr15.83365896.-	chr15	83365896	83365897	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12739	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr8.20290523.-	chr8	20290523	20290524	-	0	NA	Intergenic	L2|LINE|L2	-157239	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	miscRNA
chr2.47661263.-	chr2	47661263	47661264	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31057	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr1.182583528.-	chr1	182583528	182583529	-	0	NA	promoter-TSS (NR_036490)	promoter-TSS (NR_036490)	747	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LOC284648	-	uncharacterized LOC284648	miscRNA
chr10.134411400.-	chr10	134411400	134411401	-	0	NA	"intron (NM_005539, intron 1 of 15)"	CpG	-60047	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr11.1388686.+	chr11	1388686	1388687	+	0	NA	Intergenic	AluY|SINE|Alu	-22443	NM_003957	9024	Hs.170819	NM_001256627	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|STK29	BR serine/threonine kinase 2	protein-coding
chr11.507444.+	chr11	507444	507445	+	0	NA	promoter-TSS (NM_002939)	promoter-TSS (NM_002939)	-161	NM_203387	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
chr17.72916048.-	chr17	72916048	72916049	-	0	NA	"exon (NM_173477, exon 2 of 3)"	"exon (NM_173477, exon 2 of 3)"	-3303	NM_173477	124590	Hs.376688	NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	Usher syndrome 1G (autosomal recessive)	protein-coding
chr19.47682448.-	chr19	47682448	47682449	-	0	NA	"intron (NM_001145713, intron 6 of 6)"	AluY|SINE|Alu	47751	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	-	microRNA 3190	miscRNA
chr2.128145098.+	chr2	128145098	128145099	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-30898	NM_000312	5624	Hs.224698	NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C (inactivator of coagulation factors Va and VIIIa)	protein-coding
chr8.128328703.-	chr8	128328703	128328704	-	0	NA	Intergenic	Intergenic	99154	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr7.124427199.-	chr7	124427199	124427200	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3665	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr6.150410272.-	chr6	150410272	150410273	-	0	NA	Intergenic	Intergenic	20070	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr16.86962840.-	chr16	86962840	86962841	-	0	NA	Intergenic	Intergenic	-350725	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr9.132245321.+	chr9	132245321	132245322	+	0	NA	Intergenic	CpG	-5618	NR_038955	100506190	Hs.529860	NR_038955		LOC100506190	-	uncharacterized LOC100506190	miscRNA
chr8.14882318.-	chr8	14882318	14882319	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171299	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr2.25757620.-	chr2	25757620	25757621	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-115471	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr10.101292636.+	chr10	101292636	101292637	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-54	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr4.93787955.+	chr4	93787955	93787956	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562405	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr22.43045031.-	chr22	43045031	43045032	-	0	NA	"intron (NM_000398, intron 1 of 8)"	CpG	-374	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chr3.113351567.+	chr3	113351567	113351568	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	37844	NR_039648	100616476		NR_039648		MIR4446	-	microRNA 4446	miscRNA
chr2.121244091.+	chr2	121244091	121244092	+	0	NA	Intergenic	Intergenic	-20166	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr9.36859973.+	chr9	36859973	36859974	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4332	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr15.25149759.+	chr15	25149759	25149760	+	0	NA	"intron (NM_022807, intron 3 of 12)"	AluSx|SINE|Alu	48061	NM_022805	6638	Hs.743549	NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
chr11.113665974.+	chr11	113665974	113665975	+	0	NA	Intergenic	AluSx|SINE|Alu	15456	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr2.240750928.-	chr2	240750928	240750929	-	0	NA	Intergenic	Intergenic	-66374	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chr10.43715065.+	chr10	43715065	43715066	+	0	NA	"intron (NM_145313, intron 1 of 12)"	"intron (NM_145313, intron 1 of 12)"	47302	NM_145313	221002	Hs.125293	NM_145313	ENSG00000198915	RASGEF1A	CG4853	"RasGEF domain family, member 1A"	protein-coding
chr2.11817359.-	chr2	11817359	11817360	-	0	NA	promoter-TSS (NM_001261428)	promoter-TSS (NM_001261428)	346	NM_001261428	23175	Hs.739141	NM_001261427	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
chr4.185174246.+	chr4	185174246	185174247	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35132	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr20.48579886.+	chr20	48579886	48579887	+	0	NA	Intergenic	AluSx3|SINE|Alu	-19627	NM_005985	6615	Hs.48029	NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail homolog 1 (Drosophila)	protein-coding
chr2.175518221.-	chr2	175518221	175518222	-	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	18914	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr11.105759221.+	chr11	105759221	105759222	+	0	NA	"intron (NM_000829, intron 6 of 16)"	AluYa5|SINE|Alu	133733	NM_032424	84437	Hs.266782	NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
chr6.46742433.+	chr6	46742433	46742434	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18661	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr5.170687160.+	chr5	170687160	170687161	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49128	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chrM.9313.+	chrM	9313	9314	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.168395064.-	chr6	168395064	168395065	-	0	NA	Intergenic	AluSx|SINE|Alu	17445	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr1.101786701.-	chr1	101786701	101786702	-	0	NA	Intergenic	AluY|SINE|Alu	-19750	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr20.5616793.+	chr20	5616793	5616794	+	0	NA	Intergenic	MER41A|LTR|ERV1	-25121	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	protein-coding
chr19.2194623.+	chr19	2194623	2194624	+	0	NA	"intron (NM_032482, intron 7 of 27)"	C-rich|Low_complexity|Low_complexity	30475	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr3.22843324.+	chr3	22843324	22843325	+	0	NA	Intergenic	L1PA2|LINE|L1	-401460	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr16.189156.+	chr16	189156	189157	+	0	NA	promoter-TSS (NM_001039476)	promoter-TSS (NM_001039476)	-459	NM_001243249	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr16.924581.+	chr16	924581	924582	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69138	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr15.41613146.-	chr15	41613146	41613147	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11673	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr9.28773090.-	chr9	28773090	28773091	-	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	53787	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr9.26219194.-	chr9	26219194	26219195	-	0	NA	Intergenic	AluY|SINE|Alu	-152521	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr21.46737153.-	chr21	46737153	46737154	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29186	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr20.52741116.+	chr20	52741116	52741117	+	0	NA	Intergenic	AluSx1|SINE|Alu	49400	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr20.29518635.-	chr20	29518635	29518636	-	0	NA	Intergenic	SST1|Satellite|centr	93244	NR_003579	284802	Hs.653099	NR_003579	ENSG00000149531	FRG1B	C20orf80|bA348I14.2	"FSHD region gene 1 family, member B"	pseudo
chr1.180923148.+	chr1	180923148	180923149	+	0	NA	Intergenic	CpG	40835	NM_020950	57710	Hs.734816	NM_020950		KIAA1614	RP11-46A10.3	KIAA1614	protein-coding
chr6.166722238.-	chr6	166722238	166722239	-	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	367	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr4.148279086.-	chr4	148279086	148279087	-	0	NA	Intergenic	SVA_D|Other|Other	122983	NM_001256283	1909	Hs.183713	NM_001166055	ENSG00000151617	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
chr3.164119730.+	chr3	164119730	164119731	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676553	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr8.30590094.+	chr8	30590094	30590095	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4608	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr2.55921034.-	chr2	55921034	55921035	-	0	NA	promoter-TSS (NM_033109)	promoter-TSS (NM_033109)	-11	NM_033109	87178	Hs.388733	NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
chrX.53111481.-	chrX	53111481	53111482	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	61	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.53324865.-	chr2	53324865	53324866	-	0	NA	Intergenic	AluY|SINE|Alu	670064	NM_001008708	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	"ChaC, cation transport regulator homolog 2 (E. coli)"	protein-coding
chrX.133328836.-	chrX	133328836	133328837	-	0	NA	Intergenic	AluSg|SINE|Alu	24528	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr1.40237093.-	chr1	40237093	40237094	-	0	NA	promoter-TSS (NM_022120)	promoter-TSS (NM_022120)	73	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	SCOTT	3-oxoacid CoA transferase 2	protein-coding
chr1.181058725.+	chr1	181058725	181058726	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1087	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr12.105389750.+	chr12	105389750	105389751	+	0	NA	Intergenic	AluY|SINE|Alu	9652	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr12.124458159.+	chr12	124458159	124458160	+	0	NA	promoter-TSS (NM_025140)	promoter-TSS (NM_025140)	397	NM_001204299	100533183	Hs.524828	NM_001204299	ENSG00000255906	ZNF664-FAM101A	-	protein FAM101A	protein-coding
chr16.85681562.-	chr16	85681562	85681563	-	0	NA	"intron (NM_014615, intron 2 of 15)"	"intron (NM_014615, intron 2 of 15)"	-34638	NM_014615	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr7.158218556.-	chr7	158218556	158218557	-	0	NA	"intron (NM_130842, intron 1 of 21)"	CpG	-106949	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr20.44451696.+	chr20	44451696	44451697	+	0	NA	TTS (NM_003279)	TTS (NM_003279)	4257	NM_003279	7125	Hs.182421	NM_003279	ENSG00000101470	TNNC2	-	troponin C type 2 (fast)	protein-coding
chr19.21728105.+	chr19	21728105	21728106	+	0	NA	Intergenic	AluYc|SINE|Alu	39668	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr2.136760886.-	chr2	136760886	136760887	-	0	NA	Intergenic	AluSq2|SINE|Alu	17664	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr19.10420465.+	chr19	10420465	10420466	+	0	NA	promoter-TSS (NM_001103167)	promoter-TSS (NM_001103167)	-232	NM_001103167	100125288	Hs.709296	NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	"zinc finger, GATA-like protein 1"	protein-coding
chr16.68889470.+	chr16	68889470	68889471	+	0	NA	"intron (NM_024562, intron 1 of 17)"	AluSx|SINE|Alu	11961	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
chr6.141000363.-	chr6	141000363	141000364	-	0	NA	Intergenic	AluY|SINE|Alu	4588	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chrM.9296.-	chrM	9296	9297	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.1959154.+	chr16	1959154	1959155	+	0	NA	Intergenic	Intergenic	9077	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr7.5251985.+	chr7	5251985	5251986	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	"intron (NM_001033519, intron 2 of 11)"	-1915	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr13.112726545.-	chr13	112726545	112726546	-	0	NA	TTS (NM_005986)	TTS (NM_005986)	-4632	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr19.13497356.-	chr19	13497356	13497357	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119918	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr21.20831247.+	chr21	20831247	20831248	+	0	NA	Intergenic	AluYf4|SINE|Alu	-1055277	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chr17.48207401.-	chr17	48207401	48207402	-	0	NA	promoter-TSS (NM_174920)	promoter-TSS (NM_174920)	155	NM_001257359	201191	Hs.567769	NM_001257359	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
chr13.23949383.+	chr13	23949383	23949384	+	0	NA	"exon (NM_014363, exon 3 of 10)"	"exon (NM_014363, exon 3 of 10)"	58458	NM_014363	26278	Hs.159492	NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29	spastic ataxia of Charlevoix-Saguenay (sacsin)	protein-coding
chr15.91370872.+	chr15	91370872	91370873	+	0	NA	Intergenic	AluSz|SINE|Alu	-41013	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr19.16136956.+	chr19	16136956	16136957	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7567	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr19.5409927.+	chr19	5409927	5409928	+	0	NA	Intergenic	AluY|SINE|Alu	-45499	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr6.165122663.-	chr6	165122663	165122664	-	0	NA	Intergenic	Intergenic	-600448	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr15.89721773.+	chr15	89721773	89721774	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43149	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr3.197461126.-	chr3	197461126	197461127	-	0	NA	"intron (NM_001145642, intron 1 of 20)"	AluSx1|SINE|Alu	-2647	NM_014687	9711	Hs.478868	NM_014687	ENSG00000145016	KIAA0226	RUBICON	KIAA0226	protein-coding
chr13.95810682.+	chr13	95810682	95810683	+	0	NA	"intron (NM_005845, intron 19 of 30)"	"intron (NM_005845, intron 19 of 30)"	143005	NM_001105515	10257	Hs.508423	NM_001105515	ENSG00000125257	ABCC4	EST170205|MOAT-B|MOATB|MRP4	"ATP-binding cassette, sub-family C (CFTR/MRP), member 4"	protein-coding
chr21.43198278.-	chr21	43198278	43198279	-	0	NA	Intergenic	Intergenic	11029	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr14.97183887.-	chr14	97183887	97183888	-	0	NA	Intergenic	AluY|SINE|Alu	79797	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr3.114903172.+	chr3	114903172	114903173	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37045	NM_015642	26137	Hs.655108	NM_001164342	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
chr5.72594501.+	chr5	72594501	72594502	+	0	NA	Intergenic	CpG	125478	NM_153217	134288	Hs.508588	NM_153217	ENSG00000164325	TMEM174	-	transmembrane protein 174	protein-coding
chr7.155589838.-	chr7	155589838	155589839	-	0	NA	Intergenic	CpG	-15129	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr17.8342608.-	chr17	8342608	8342609	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3438	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr12.38493643.-	chr12	38493643	38493644	-	0	NA	Intergenic	Intergenic	216914	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr9.19088677.+	chr9	19088677	19088678	+	0	NA	"intron (NM_001270890, intron 5 of 16)"	AluSx1|SINE|Alu	14263	NM_017645	54801	Hs.533468	NM_001270890	ENSG00000147874	HAUS6	Dgt6|FAM29A	"HAUS augmin-like complex, subunit 6"	protein-coding
chr2.192374849.+	chr2	192374849	192374850	+	0	NA	Intergenic	AluY|SINE|Alu	-167949	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr7.137585359.-	chr7	137585359	137585360	-	0	NA	"intron (NM_194071, intron 8 of 11)"	AluSc|SINE|Alu	52735	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
chr16.70133246.+	chr16	70133246	70133247	+	0	NA	Intergenic	AluY|SINE|Alu	-14283	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr12.9892356.+	chr12	9892356	9892357	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6461	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr1.5005150.+	chr1	5005150	5005151	+	0	NA	Intergenic	Intergenic	290045	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr17.48423417.-	chr17	48423417	48423418	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	-24	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr2.170666400.-	chr2	170666400	170666401	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11078	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr1.97228879.+	chr1	97228879	97228880	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41704	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr17.77746694.+	chr17	77746694	77746695	+	0	NA	Intergenic	Intergenic	-5283	NM_005189	84733	Hs.368410	NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox homolog 2	protein-coding
chr17.28675262.-	chr17	28675262	28675263	-	0	NA	Intergenic	AluY|SINE|Alu	14197	NM_206832	388364	Hs.371005	NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
chr6.154297572.+	chr6	154297572	154297573	+	0	NA	Intergenic	AluSx1|SINE|Alu	-34059	NM_001145280	4988	Hs.2353	NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	"opioid receptor, mu 1"	protein-coding
chr19.2996085.+	chr19	2996085	2996086	+	0	NA	TTS (NM_001143986)	TTS (NM_001143986)	18549	NM_001143986	79816	Hs.334507	NM_001143986	ENSG00000104953	TLE6	GRG6	"transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)"	protein-coding
chr2.10165504.+	chr2	10165504	10165505	+	0	NA	Intergenic	AluJo|SINE|Alu	-18178	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr22.51001351.+	chr22	51001351	51001352	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-23	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr3.172180199.+	chr3	172180199	172180200	+	0	NA	Intergenic	AluY|SINE|Alu	-13953	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr21.44478112.-	chr21	44478112	44478113	-	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	-17928	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr6.8388432.+	chr6	8388432	8388433	+	0	NA	Intergenic	LTR9|LTR|ERV1	47362	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr5.36690458.+	chr5	36690458	36690459	+	0	NA	Intergenic	CpG	82027	NM_001166695	6507	Hs.481918	NM_001166695	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	"solute carrier family 1 (glial high affinity glutamate transporter), member 3"	protein-coding
chr22.24237310.+	chr22	24237310	24237311	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	745	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr1.142635181.+	chr1	142635181	142635182	+	0	NA	Intergenic	MER52A|LTR|ERV1	78424	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	"ankyrin repeat domain 20 family, member A12, pseudogene"	pseudo
chr4.72877013.-	chr4	72877013	72877014	-	0	NA	Intergenic	AluY|SINE|Alu	20508	NM_004885	10886	Hs.99231	NM_001144756	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
chr7.1470036.-	chr7	1470036	1470037	-	0	NA	Intergenic	Intergenic	-29073	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr5.1067375.+	chr5	1067375	1067376	+	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	-4286	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr19.16137040.-	chr19	16137040	16137041	-	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	7483	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr14.103988562.+	chr14	103988562	103988563	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	634	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr12.46411953.-	chr12	46411953	46411954	-	0	NA	Intergenic	LTR12C|LTR|ERV1	27552	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr1.9517583.-	chr1	9517583	9517584	-	0	NA	Intergenic	AluJb|SINE|Alu	81945	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr3.183646060.+	chr3	183646060	183646061	+	0	NA	"intron (NM_005688, intron 27 of 29)"	AluSq|SINE|Alu	-43367	NM_001037639	55486	Hs.478469	NM_001037639	ENSG00000175193	PARL	PSARL|PSARL1|PSENIP2|RHBDS1	"presenilin associated, rhomboid-like"	protein-coding
chr12.100804214.+	chr12	100804214	100804215	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53357	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr19.47628011.-	chr19	47628011	47628012	-	0	NA	Intergenic	AluY|SINE|Alu	6069	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr7.2943506.-	chr7	2943506	2943507	-	0	NA	Intergenic	Intergenic	59547	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr2.240980308.-	chr2	240980308	240980309	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2091	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr15.83365841.-	chr15	83365841	83365842	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12794	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr6.105414626.-	chr6	105414626	105414627	-	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	-9703	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr15.89335915.-	chr15	89335915	89335916	-	0	NA	Intergenic	Intergenic	10759	NM_001135	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr7.54614208.+	chr7	54614208	54614209	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4189	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr4.187891636.+	chr4	187891636	187891637	+	0	NA	Intergenic	CpG	-246649	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chr14.106146572.+	chr14	106146572	106146573	+	0	NA	Intergenic	CpG	-7428	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	"ELK2A, member of ETS oncogene family, pseudogene"	pseudo
chr15.37172819.-	chr15	37172819	37172820	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5915	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr5.1770144.-	chr5	1770144	1770145	-	0	NA	Intergenic	L1MB5|LINE|L1	-29812	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chrX.133564963.+	chrX	133564963	133564964	+	0	NA	Intergenic	AluSp|SINE|Alu	-29212	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr14.55349947.-	chr14	55349947	55349948	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5036	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr16.71814169.-	chr16	71814169	71814170	-	0	NA	"intron (NM_001030007, intron 2 of 23)"	AluSz|SINE|Alu	21779	NR_003059	692111		NR_003059		SNORD71	HBII-239|MIRN768|hsa-mir-768	"small nucleolar RNA, C/D box 71"	snoRNA
chr17.7246113.+	chr17	7246113	7246114	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6265	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr10.90883677.-	chr10	90883677	90883678	-	0	NA	Intergenic	AluSx|SINE|Alu	60509	NR_039827	100616192		NR_039827	ENSG00000265375	MIR4679-2	-	microRNA 4679-2	miscRNA
chr2.240187918.-	chr2	240187918	240187919	-	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	39239	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr22.49791866.-	chr22	49791866	49791867	-	0	NA	Intergenic	Intergenic	-259324	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr9.139071843.+	chr9	139071843	139071844	+	0	NA	Intergenic	Intergenic	23161	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr19.644313.-	chr19	644313	644314	-	0	NA	TTS (NM_020637)	TTS (NM_020637)	-4387	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr9.34329561.-	chr9	34329561	34329562	-	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-57	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr10.35336431.+	chr10	35336431	35336432	+	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	26827	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr6.168219523.-	chr6	168219523	168219524	-	0	NA	Intergenic	AluSp|SINE|Alu	-7953	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr5.86315076.-	chr5	86315076	86315077	-	0	NA	Intergenic	AluYc3|SINE|Alu	-95695	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	miscRNA
chr1.40330236.-	chr1	40330236	40330237	-	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	-18941	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr1.217314047.+	chr1	217314047	217314048	+	0	NA	Intergenic	Intergenic	-2950	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr15.23086493.-	chr15	23086493	23086494	-	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	57	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr20.45991148.+	chr20	45991148	45991149	+	0	NA	Intergenic	AluSz|SINE|Alu	-5674	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr2.173941030.-	chr2	173941030	173941031	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-465	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr10.118500952.+	chr10	118500952	118500953	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1133	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr2.224254341.-	chr2	224254341	224254342	-	0	NA	Intergenic	MER49|LTR|ERV1	-212876	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
chr15.93372500.-	chr15	93372500	93372501	-	0	NA	Intergenic	AluSg|SINE|Alu	-33786	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chrX.113575455.+	chrX	113575455	113575456	+	0	NA	Intergenic	AluJb|SINE|Alu	-243096	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr3.170641157.+	chr3	170641157	170641158	+	0	NA	Intergenic	SVA_C|Other|Other	-14731	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr8.22594725.+	chr8	22594725	22594726	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43910	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr9.86571468.+	chr9	86571468	86571469	+	0	NA	"5' UTR (NM_032307, exon 1 of 4)"	"5' UTR (NM_032307, exon 1 of 4)"	195	NM_032307	84267	Hs.208914	NM_032307	ENSG00000165118	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
chr19.1256354.-	chr19	1256354	1256355	-	0	NA	"intron (NM_177401, intron 7 of 7)"	AluY|SINE|Alu	-7802	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr18.19630094.-	chr18	19630094	19630095	-	0	NA	Intergenic	AluY|SINE|Alu	119310	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr9.137588882.+	chr9	137588882	137588883	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55230	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr2.6835331.-	chr2	6835331	6835332	-	0	NA	Intergenic	AluSq|SINE|Alu	-75111	NR_038369	400941	Hs.446195	NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	miscRNA
chr6.5085633.-	chr6	5085633	5085634	-	0	NA	promoter-TSS (NM_001145115)	promoter-TSS (NM_001145115)	87	NM_001145115	648791	Hs.653089	NM_001145115	ENSG00000219607	PPP1R3G	-	"protein phosphatase 1, regulatory subunit 3G"	protein-coding
chr11.28078799.+	chr11	28078799	28078800	+	0	NA	TTS (NR_030341)	TTS (NR_030341)	437	NR_030341	693195		NR_030341	ENSG00000207874	MIR610	MIRN610|hsa-mir-610	microRNA 610	miscRNA
chr16.81282921.+	chr16	81282921	81282922	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10625	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr3.126207231.-	chr3	126207231	126207232	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12469	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr7.130586402.-	chr7	130586402	130586403	-	0	NA	"intron (NR_034120, intron 2 of 3)"	"intron (NR_034120, intron 2 of 3)"	-11667	NR_034120	646329	Hs.150556	NR_034120	ENSG00000226380	LOC646329	-	uncharacterized LOC646329	miscRNA
chr17.2731905.-	chr17	2731905	2731906	-	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	-32173	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr3.57921757.+	chr3	57921757	57921758	+	0	NA	Intergenic	AluSc8|SINE|Alu	-72370	NM_001457	2317	Hs.476448	NM_001164317	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	"filamin B, beta"	protein-coding
chr19.50686871.-	chr19	50686871	50686872	-	0	NA	Intergenic	AluSx|SINE|Alu	20014	NM_024729	79784	Hs.467142	NM_001077186	ENSG00000105357	MYH14	DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	"myosin, heavy chain 14, non-muscle"	protein-coding
chr12.118812093.+	chr12	118812093	118812094	+	0	NA	Intergenic	AluSx|SINE|Alu	-1343	NM_016281	51347	Hs.644420	NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
chr1.87880685.+	chr1	87880685	87880686	+	0	NA	Intergenic	AluY|SINE|Alu	-43347	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LOC100505768	-	uncharacterized LOC100505768	miscRNA
chr16.31103090.-	chr16	31103090	31103091	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	2960	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr7.124427203.-	chr7	124427203	124427204	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3661	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr5.18111614.+	chr5	18111614	18111615	+	0	NA	Intergenic	AluY|SINE|Alu	-724195	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr7.158068893.-	chr7	158068893	158068894	-	0	NA	"intron (NM_130842, intron 2 of 21)"	"intron (NM_130842, intron 2 of 21)"	-256612	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr12.66768074.+	chr12	66768074	66768075	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71739	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr3.172180151.-	chr3	172180151	172180152	-	0	NA	Intergenic	AluY|SINE|Alu	13905	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr2.21484580.-	chr2	21484580	21484581	-	0	NA	Intergenic	Intergenic	217635	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr8.68297802.-	chr8	68297802	68297803	-	0	NA	Intergenic	AluY|SINE|Alu	41890	NM_006421	10565	Hs.656902	NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)	protein-coding
chr22.38336410.-	chr22	38336410	38336411	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13244	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr20.33062684.-	chr20	33062684	33062685	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8554	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chrX.129230996.-	chrX	129230996	129230997	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13479	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr9.12352799.+	chr9	12352799	12352800	+	0	NA	Intergenic	AluY|SINE|Alu	-340587	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr16.12997205.-	chr16	12997205	12997206	-	0	NA	"intron (NM_001145204, intron 1 of 4)"	CpG	-1728	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa homolog 9 (Xenopus laevis)	protein-coding
chr17.5148730.-	chr17	5148730	5148731	-	0	NA	Intergenic	AluSq|SINE|Alu	10575	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr9.137722612.+	chr9	137722612	137722613	+	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	18603	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr20.4729592.-	chr20	4729592	4729593	-	0	NA	Intergenic	Intergenic	8278	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr2.237068226.+	chr2	237068226	237068227	+	0	NA	Intergenic	CpG	8426	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr9.8858151.+	chr9	8858151	8858152	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124205	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr11.92637234.-	chr11	92637234	92637235	-	0	NA	Intergenic	AluY|SINE|Alu	65555	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr7.77452591.-	chr7	77452591	77452592	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16856	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr15.29130797.+	chr15	29130797	29130798	+	0	NA	Intergenic	CpG	-36976	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr4.85768782.-	chr4	85768782	85768783	-	0	NA	"intron (NM_014991, intron 5 of 67)"	AluSc8|SINE|Alu	-118762	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr6.36207426.+	chr6	36207426	36207427	+	0	NA	Intergenic	Intergenic	-3519	NM_173676	285848	Hs.407002	NM_001145716	ENSG00000180316	PNPLA1	ARCI10|dJ50J22.1	patatin-like phospholipase domain containing 1	protein-coding
chr13.114899252.+	chr13	114899252	114899253	+	0	NA	Intergenic	Intergenic	-1157	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr21.45243651.-	chr21	45243651	45243652	-	0	NA	Intergenic	Intergenic	11203	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr11.45810308.-	chr11	45810308	45810309	-	0	NA	Intergenic	AluSz6|SINE|Alu	15315	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chrM.15244.-	chrM	15244	15245	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.1144531.-	chr3	1144531	1144532	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9902	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr4.166248524.+	chr4	166248524	166248525	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-294	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr10.118500958.+	chr10	118500958	118500959	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1127	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr7.64493623.+	chr7	64493623	64493624	+	0	NA	Intergenic	SVA_C|Other|Other	-5109	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr17.40536620.-	chr17	40536620	40536621	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3785	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr2.115328227.+	chr2	115328227	115328228	+	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	109047	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr19.10408200.+	chr19	10408200	10408201	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7545	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr2.61701799.-	chr2	61701799	61701800	-	0	NA	Intergenic	AluSg|SINE|Alu	3950	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr19.53979644.-	chr19	53979644	53979645	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8655	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr14.105242454.+	chr14	105242454	105242455	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17484	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr9.77401558.-	chr9	77401558	77401559	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100705	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr20.47588412.+	chr20	47588412	47588413	+	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	50137	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr5.118283986.-	chr5	118283986	118283987	-	0	NA	"intron (NM_173666, intron 1 of 5)"	AluY|SINE|Alu	26295	NR_036262	100422885		NR_036262		MIR1244-2	-	microRNA 1244-2	miscRNA
chr17.21825597.+	chr17	21825597	21825598	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	227	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr1.1002692.-	chr1	1002692	1002693	-	0	NA	Intergenic	CpG	-6995	NM_001205252	401934	Hs.568137	NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
chr20.18441230.+	chr20	18441230	18441231	+	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	6599	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr20.52741097.+	chr20	52741097	52741098	+	0	NA	Intergenic	AluSx1|SINE|Alu	49419	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr2.62230418.+	chr2	62230418	62230419	+	0	NA	"intron (NM_152516, intron 2 of 2)"	AluY|SINE|Alu	97615	NM_152516	150684	Hs.468702	NM_152516		COMMD1	C2orf5|MURR1	copper metabolism (Murr1) domain containing 1	protein-coding
chr13.112902974.-	chr13	112902974	112902975	-	0	NA	Intergenic	Intergenic	127677	NM_145248	122258	Hs.97592	NM_145248	ENSG00000153498	SPACA7	C13orf28	sperm acrosome associated 7	protein-coding
chr3.1144523.+	chr3	1144523	1144524	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9894	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr17.74632760.-	chr17	74632760	74632761	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7134	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr2.88284178.-	chr2	88284178	88284179	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	AluY|SINE|Alu	-1131	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
chr8.143681060.-	chr8	143681060	143681061	-	0	NA	Intergenic	Intergenic	-14773	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr14.35800643.-	chr14	35800643	35800644	-	0	NA	Intergenic	AluSx|SINE|Alu	-39069	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr6.108315269.+	chr6	108315269	108315270	+	0	NA	Intergenic	AluSz|SINE|Alu	-35787	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr14.97183871.+	chr14	97183871	97183872	+	0	NA	Intergenic	AluY|SINE|Alu	-79813	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr5.131831939.-	chr5	131831939	131831940	-	0	NA	Intergenic	Intergenic	5474	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr4.1497286.+	chr4	1497286	1497287	+	0	NA	Intergenic	Intergenic	111946	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr3.128194305.+	chr3	128194305	128194306	+	0	NA	Intergenic	Intergenic	-8214	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chrX.130876702.-	chrX	130876702	130876703	-	0	NA	"intron (NR_026975, intron 10 of 12)"	AluSg|SINE|Alu	-87969	NR_026975	286467	Hs.720385	NR_026975	ENSG00000213468	LOC286467	-	"family with sequence similarity 195, member A pseudogene"	pseudo
chr1.54775688.+	chr1	54775688	54775689	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96291	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chrX.153150940.-	chrX	153150940	153150941	-	0	NA	Intergenic	Intergenic	9541	NM_001143963	3897	Hs.522818	NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
chr17.46184894.-	chr17	46184894	46184895	-	0	NA	promoter-TSS (NM_152244)	promoter-TSS (NM_152244)	26	NM_152244	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr2.204121206.-	chr2	204121206	204121207	-	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	-18042	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr16.2077115.+	chr16	2077115	2077116	+	0	NA	"exon (NM_001130012, exon 1 of 7)"	"exon (NM_001130012, exon 1 of 7)"	246	NM_004785	9351	Hs.440896	NM_001130012	ENSG00000065054	SLC9A3R2	E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2"	protein-coding
chr2.73429805.-	chr2	73429805	73429806	-	0	NA	"exon (NM_001134462, exon 1 of 3)"	"exon (NM_001134462, exon 1 of 3)"	-419	NM_001134462	344022	Hs.694384	NM_001134462		NOTO	-	notochord homeobox	protein-coding
chr21.34522819.+	chr21	34522819	34522820	+	0	NA	Intergenic	AluY|SINE|Alu	19722	NR_024102	728409	Hs.125234	NR_024102	ENSG00000229086	C21orf54	-	chromosome 21 open reading frame 54	miscRNA
chr12.85283184.+	chr12	85283184	85283185	+	0	NA	"intron (NM_001146335, intron 1 of 10)"	AluY|SINE|Alu	23424	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr14.105758258.-	chr14	105758258	105758259	-	0	NA	"intron (NM_001242787, intron 1 of 17)"	AluSq2|SINE|Alu	8912	NM_001243127	23241	Hs.525626	NM_001100913	ENSG00000179364	PACS2	PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
chr19.2984341.+	chr19	2984341	2984342	+	0	NA	"intron (NM_024760, intron 4 of 15)"	"intron (NM_024760, intron 4 of 15)"	6805	NM_001143986	79816	Hs.334507	NM_001143986	ENSG00000104953	TLE6	GRG6	"transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)"	protein-coding
chr17.11800293.+	chr17	11800293	11800294	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14074	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr20.56964227.+	chr20	56964227	56964228	+	0	NA	promoter-TSS (NM_001195677)	promoter-TSS (NM_001195677)	52	NR_036633	9217	Hs.182625	NM_001195677	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP (vesicle-associated membrane protein)-associated protein B and C	protein-coding
chr9.719236.-	chr9	719236	719237	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12430	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr22.32868762.+	chr22	32868762	32868763	+	0	NA	Intergenic	AluY|SINE|Alu	-1945	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr2.224724687.-	chr2	224724687	224724688	-	0	NA	Intergenic	AluSp|SINE|Alu	22368	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr10.21843637.+	chr10	21843637	21843638	+	0	NA	"intron (NM_001195627, intron 4 of 4)"	AluSc|SINE|Alu	20063	NM_001195626	8028	Hs.30385	NM_001195626	ENSG00000078403	MLLT10	AF10	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10"	protein-coding
chr19.674639.-	chr19	674639	674640	-	0	NA	Intergenic	Intergenic	1750	NM_005860	10272	Hs.529038	NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin-like 3 (secreted glycoprotein)	protein-coding
chr8.123636957.+	chr8	123636957	123636958	+	0	NA	Intergenic	AluSx|SINE|Alu	-156944	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr12.66636784.-	chr12	66636784	66636785	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53806	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr8.41166072.+	chr8	41166072	41166073	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	918	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr2.207036830.+	chr2	207036830	207036831	+	0	NA	Intergenic	SVA_D|Other|Other	9878	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr5.179517686.-	chr5	179517686	179517687	-	0	NA	Intergenic	AluSz|SINE|Alu	18577	NM_018434	55819	Hs.484363	NM_018434	ENSG00000113269	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
chr19.270772.-	chr19	270772	270773	-	0	NA	Intergenic	Intergenic	-20397	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr17.40432915.-	chr17	40432915	40432916	-	0	NA	Intergenic	AluY|SINE|Alu	4491	NM_012448	6777	Hs.743995	NM_012448	ENSG00000173757	STAT5B	STAT5	signal transducer and activator of transcription 5B	protein-coding
chr1.224601865.-	chr1	224601865	224601866	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15852	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr6.142795193.-	chr6	142795193	142795194	-	0	NA	Intergenic	AluSc|SINE|Alu	-163780	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr16.87910829.-	chr16	87910829	87910830	-	0	NA	Intergenic	AluY|SINE|Alu	7729	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr6.70692616.+	chr6	70692616	70692617	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116168	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr5.159429711.+	chr5	159429711	159429712	+	0	NA	Intergenic	AluSz|SINE|Alu	-6469	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr2.101245782.-	chr2	101245782	101245783	-	0	NA	Intergenic	Intergenic	-66364	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr6.46742396.-	chr6	46742396	46742397	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18698	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr2.91874338.+	chr2	91874338	91874339	+	0	NA	Intergenic	CpG	-26363	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr22.49791854.+	chr22	49791854	49791855	+	0	NA	Intergenic	Intergenic	259336	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr8.28669097.-	chr8	28669097	28669098	-	0	NA	"intron (NR_026826, intron 6 of 14)"	AluJb|SINE|Alu	-78335	NM_001172562	55756	Hs.162397	NM_001145159	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
chr7.47608376.+	chr7	47608376	47608377	+	0	NA	"intron (NM_022748, intron 1 of 30)"	"intron (NM_022748, intron 1 of 30)"	13366	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
chr17.79427775.-	chr17	79427775	79427776	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9561	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr3.8721292.-	chr3	8721292	8721293	-	0	NA	Intergenic	Intergenic	27528	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr7.69975991.+	chr7	69975991	69975992	+	0	NA	"intron (NM_015570, intron 5 of 18)"	AluSx1|SINE|Alu	-621532	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr16.84670304.-	chr16	84670304	84670305	-	0	NA	Intergenic	AluY|SINE|Alu	11827	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr11.67351045.+	chr11	67351045	67351046	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-21	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr11.2213881.-	chr11	2213881	2213882	-	0	NA	Intergenic	Intergenic	-19588	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr21.38403701.+	chr21	38403701	38403702	+	0	NA	Intergenic	AluJb|SINE|Alu	24838	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	DSCR6	RIPPLY3	Down syndrome critical region gene 6	protein-coding
chr15.27067588.+	chr15	27067588	27067589	+	0	NA	Intergenic	LTR52|LTR|ERVL	-44278	NM_000810	2558	Hs.24969	NM_000810	ENSG00000186297	GABRA5	-	"gamma-aminobutyric acid (GABA) A receptor, alpha 5"	protein-coding
chr12.118812048.+	chr12	118812048	118812049	+	0	NA	Intergenic	AluSx|SINE|Alu	-1298	NM_016281	51347	Hs.644420	NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
chr4.185174113.+	chr4	185174113	185174114	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-34999	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr12.33592853.-	chr12	33592853	33592854	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	99	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr15.37172792.-	chr15	37172792	37172793	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5942	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr4.154605596.-	chr4	154605596	154605597	-	0	NA	"intron (NM_003264, intron 1 of 2)"	CpG	-155	NM_003264	7097	Hs.519033	NM_003264		TLR2	CD282|TIL4	toll-like receptor 2	protein-coding
chr17.40536623.-	chr17	40536623	40536624	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3782	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr2.43898394.-	chr2	43898394	43898395	-	0	NA	"intron (NM_172069, intron 2 of 29)"	AluSq10|SINE|Alu	-5067	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
chr17.35829301.-	chr17	35829301	35829302	-	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	20650	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chrX.133328840.+	chrX	133328840	133328841	+	0	NA	Intergenic	AluSg|SINE|Alu	-24532	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr10.104238464.+	chr10	104238464	104238465	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17294	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr7.5557975.-	chr7	5557975	5557976	-	0	NA	Intergenic	AluYc|SINE|Alu	4576	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr2.19560992.+	chr2	19560992	19560993	+	0	NA	Intergenic	CpG	-2620	NM_145260	130497	Hs.123933	NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related 1 (Drosophila)	protein-coding
chr7.5703147.+	chr7	5703147	5703148	+	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	16945	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr7.157234946.-	chr7	157234946	157234947	-	0	NA	Intergenic	CpG	-105235	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr17.22012663.+	chr17	22012663	22012664	+	0	NA	Intergenic	Intergenic	-9774	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr11.16894160.-	chr11	16894160	16894161	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-134012	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr3.31970123.-	chr3	31970123	31970124	-	0	NA	"intron (NM_001174060, intron 1 of 10)"	AluSz|SINE|Alu	53143	NM_001137674	344787	Hs.585139	NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
chr3.49047713.-	chr3	49047713	49047714	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3076	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr12.118556941.-	chr12	118556941	118556942	-	0	NA	Intergenic	AluSx|SINE|Alu	15131	NM_019086	54621	Hs.187624	NM_019086	ENSG00000176834	VSIG10	-	V-set and immunoglobulin domain containing 10	protein-coding
chr2.239047563.-	chr2	239047563	239047564	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-200	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr12.114827412.+	chr12	114827412	114827413	+	0	NA	"intron (NM_080717, intron 5 of 7)"	AluYa5|SINE|Alu	16556	NM_181486	6910	Hs.381715	NM_000192	ENSG00000089225	TBX5	HOS	T-box 5	protein-coding
chr4.117750928.-	chr4	117750928	117750929	-	0	NA	Intergenic	AluY|SINE|Alu	-255808	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr1.101496335.-	chr1	101496335	101496336	-	0	NA	Intergenic	AluY|SINE|Alu	4973	NM_001077395	51611	Hs.440776	NM_001077394		DPH5	CGI-30|HSPC143|NPD015	DPH5 homolog (S. cerevisiae)	protein-coding
chr22.34378898.-	chr22	34378898	34378899	-	0	NA	Intergenic	AluSx1|SINE|Alu	62482	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr19.17585865.+	chr19	17585865	17585866	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4565	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr22.46303168.-	chr22	46303168	46303169	-	0	NA	Intergenic	Intergenic	-69840	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr5.86907861.+	chr5	86907861	86907862	+	0	NA	Intergenic	AluY|SINE|Alu	-199011	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr9.138959024.+	chr9	138959024	138959025	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28107	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr19.2492354.-	chr19	2492354	2492355	-	0	NA	Intergenic	AluSz|SINE|Alu	-16231	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr1.226350797.+	chr1	226350797	226350798	+	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	23626	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr3.49058379.+	chr3	49058379	49058380	+	0	NA	promoter-TSS (NR_029948)	promoter-TSS (NR_029948)	125	NM_018114	55152	Hs.708076	NM_001009996		DALRD3	-	DALR anticodon binding domain containing 3	protein-coding
chr10.12190235.+	chr10	12190235	12190236	+	0	NA	"intron (NM_001142627, intron 4 of 11)"	AluSx4|SINE|Alu	18595	NR_024576	55176	Hs.112955	NM_001142627	ENSG00000065665	SEC61A2	-	Sec61 alpha 2 subunit (S. cerevisiae)	protein-coding
chr5.172599813.-	chr5	172599813	172599814	-	0	NA	Intergenic	AluSc8|SINE|Alu	-28368	NM_013979	662	Hs.145726	NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2/adenovirus E1B 19kDa interacting protein 1	protein-coding
chr6.55775400.+	chr6	55775400	55775401	+	0	NA	Intergenic	SVA_D|Other|Other	-35025	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr13.112726542.+	chr13	112726542	112726543	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4629	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr5.176057352.-	chr5	176057352	176057353	-	0	NA	promoter-TSS (NM_001099408)	promoter-TSS (NM_001099408)	-205	NM_003085	6620	Hs.90297	NM_001001502	ENSG00000074317	SNCB	-	"synuclein, beta"	protein-coding
chr20.33062715.-	chr20	33062715	33062716	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8585	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr13.114899243.+	chr13	114899243	114899244	+	0	NA	Intergenic	Intergenic	-1148	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr12.131588853.+	chr12	131588853	131588854	+	0	NA	"intron (NM_198827, intron 15 of 24)"	"intron (NM_198827, intron 15 of 24)"	-60703	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr6.122756879.-	chr6	122756879	122756880	-	0	NA	Intergenic	AluY|SINE|Alu	-36073	NM_020755	57515	Hs.146668	NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
chr16.5016332.-	chr16	5016332	5016333	-	0	NA	"intron (NM_014692, intron 2 of 15)"	AluSx1|SINE|Alu	-8014	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14-like 5 (S. cerevisiae)	protein-coding
chr12.112161143.+	chr12	112161143	112161144	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37286	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr21.44478127.+	chr21	44478127	44478128	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17913	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr11.68855426.+	chr11	68855426	68855427	+	0	NA	"3' UTR (NM_139075, exon 25 of 25)"	"3' UTR (NM_139075, exon 25 of 25)"	39076	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr6.45365097.-	chr6	45365097	45365098	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19309	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr2.109409644.+	chr2	109409644	109409645	+	0	NA	"intron (NM_144978, intron 4 of 14)"	AluY|SINE|Alu	6425	NM_144978	165055	Hs.731709	NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
chr12.131551508.-	chr12	131551508	131551509	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98048	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr17.78977924.+	chr17	78977924	78977925	+	0	NA	Intergenic	CpG	12283	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr16.78269441.+	chr16	78269441	78269442	+	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	136114	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr17.744645.+	chr17	744645	744646	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22706	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr7.56109493.+	chr7	56109493	56109494	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9775	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr17.42869161.-	chr17	42869161	42869162	-	0	NA	Intergenic	AluY|SINE|Alu	-32593	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr18.1298465.+	chr18	1298465	1298466	+	0	NA	"intron (NR_023926, intron 2 of 5)"	AluY|SINE|Alu	61165	NR_023927	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	miscRNA
chr12.100804207.+	chr12	100804207	100804208	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53350	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr20.62479299.+	chr20	62479299	62479300	+	0	NA	Intergenic	Intergenic	-13267	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr18.12734577.-	chr18	12734577	12734578	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31590	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr8.86574377.+	chr8	86574377	86574378	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	365	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr3.15431332.+	chr3	15431332	15431333	+	0	NA	Intergenic	AluSp|SINE|Alu	37710	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr22.17044199.-	chr22	17044199	17044200	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-29501	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	"chaperonin containing TCP1, subunit 8 (theta)-like 2"	protein-coding
chr10.134216491.+	chr10	134216491	134216492	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5789	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr7.532149.+	chr7	532149	532150	+	0	NA	Intergenic	Intergenic	27332	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr1.6471032.-	chr1	6471032	6471033	-	0	NA	Intergenic	Intergenic	-8947	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr6.143858990.-	chr6	143858990	143858991	-	0	NA	Intergenic	AluSx3|SINE|Alu	-24195	NR_027114	285740	Hs.432656	NR_027113		LOC285740	-	uncharacterized LOC285740	miscRNA
chr1.161879479.+	chr1	161879479	161879480	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114165	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr1.6693073.+	chr1	6693073	6693074	+	0	NA	"exon (NM_001195753, exon 6 of 6)"	"exon (NM_001195753, exon 6 of 6)"	7863	NM_001195752	90326	Hs.689006	NM_001195752	ENSG00000041988	THAP3	-	"THAP domain containing, apoptosis associated protein 3"	protein-coding
chr20.60624013.+	chr20	60624013	60624014	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16853	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr2.159651788.+	chr2	159651788	159651789	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-41	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr5.1882710.+	chr5	1882710	1882711	+	0	NA	"intron (NM_016358, intron 1 of 4)"	CpG	170	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr11.12399216.-	chr11	12399216	12399217	-	0	NA	"exon (NM_018222, exon 1 of 13)"	"exon (NM_018222, exon 1 of 13)"	-190	NM_018222	55742	Hs.432914	NM_018222		PARVA	CH-ILKBP|MXRA2	"parvin, alpha"	protein-coding
chr10.35190153.+	chr10	35190153	35190154	+	0	NA	Intergenic	AluSp|SINE|Alu	-85900	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr12.132116835.-	chr12	132116835	132116836	-	0	NA	Intergenic	L1ME1|LINE|L1	78797	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr17.4422239.-	chr17	4422239	4422240	-	0	NA	"intron (NM_001124758, intron 2 of 12)"	"intron (NM_001124758, intron 2 of 12)"	-20110	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
chr16.87446495.+	chr16	87446495	87446496	+	0	NA	"exon (NM_015144, exon 12 of 13)"	"exon (NM_015144, exon 12 of 13)"	20694	NM_022818	81631	Hs.356061	NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule-associated protein 1 light chain 3 beta	protein-coding
chr8.29303348.+	chr8	29303348	29303349	+	0	NA	Intergenic	AluSx3|SINE|Alu	-95081	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
chr16.723801.+	chr16	723801	723802	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2274	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr19.10041338.-	chr19	10041338	10041339	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5732	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr17.3627393.-	chr17	3627393	3627394	-	0	NA	"exon (NM_031965, exon 1 of 1)"	"exon (NM_031965, exon 1 of 1)"	-196	NM_031965	83903	Hs.534059	NM_031965	ENSG00000177602	GSG2	HASPIN	germ cell associated 2 (haspin)	protein-coding
chr1.24513586.+	chr1	24513586	24513587	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	179	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr12.113725958.+	chr12	113725958	113725959	+	0	NA	"intron (NM_001143819, intron 20 of 28)"	"intron (NM_001143819, intron 20 of 28)"	46967	NM_024959	80024	Hs.286194	NM_024959	ENSG00000089060	SLC24A6	NCKX6|NCLX	"solute carrier family 24 (sodium/lithium/calcium exchanger), member 6"	protein-coding
chr9.90885107.+	chr9	90885107	90885108	+	0	NA	Intergenic	AluJb|SINE|Alu	-118190	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr17.57884698.-	chr17	57884698	57884699	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33929	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr2.122878831.+	chr2	122878831	122878832	+	0	NA	Intergenic	AluY|SINE|Alu	365710	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr9.99114726.+	chr9	99114726	99114727	+	0	NA	"intron (NM_007001, intron 4 of 11)"	AluSx|SINE|Alu	31266	NM_007001	11046	Hs.731624	NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	"solute carrier family 35, member D2"	protein-coding
chr9.113404488.+	chr9	113404488	113404489	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26563	NM_001166281	4593	Hs.521653	NM_001166280	ENSG00000030304	MUSK	-	"muscle, skeletal, receptor tyrosine kinase"	protein-coding
chr10.45240275.+	chr10	45240275	45240276	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166489	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr14.106359690.-	chr14	106359690	106359691	-	0	NA	Intergenic	Intergenic	24148	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr15.51032388.-	chr15	51032388	51032389	-	0	NA	"intron (NM_032802, intron 5 of 14)"	AluSp|SINE|Alu	-25522	NM_032802	84888	Hs.401537	NM_032802	ENSG00000138600	SPPL2A	IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
chr20.5213492.-	chr20	5213492	5213493	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81523	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr2.106682223.+	chr2	106682223	106682224	+	0	NA	"exon (NM_032411, exon 1 of 4)"	"exon (NM_032411, exon 1 of 4)"	110	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chrX.73788822.+	chrX	73788822	73788823	+	0	NA	Intergenic	SVA_D|Other|Other	45639	NM_183353	51132	Hs.653288	NM_016120		RLIM	NY-REN-43|RNF12	"ring finger protein, LIM domain interacting"	protein-coding
chr14.22016194.+	chr14	22016194	22016195	+	0	NA	Intergenic	AluY|SINE|Alu	-10857	NM_005407	6297	Hs.743336	NM_005407	ENSG00000165821	SALL2	HSAL2|Sal-2|ZNF795|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding
chr2.10549594.+	chr2	10549594	10549595	+	0	NA	"intron (NM_134421, intron 3 of 5)"	"intron (NM_134421, intron 3 of 5)"	37381	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	"small nucleolar RNA, H/ACA box 80B"	snoRNA
chr2.48784485.-	chr2	48784485	48784486	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11674	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr12.66768080.+	chr12	66768080	66768081	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71745	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr17.40484853.+	chr17	40484853	40484854	+	0	NA	"intron (NM_003150, intron 10 of 23)"	AluSx|SINE|Alu	45288	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr7.5244740.-	chr7	5244740	5244741	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9160	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr4.93787987.+	chr4	93787987	93787988	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562437	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr18.11086434.-	chr18	11086434	11086435	-	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	-62327	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr9.135946992.-	chr9	135946992	135946993	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9627	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr18.19630108.-	chr18	19630108	19630109	-	0	NA	Intergenic	AluY|SINE|Alu	119296	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr16.1845131.+	chr16	1845131	1845132	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-222	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr2.170712582.-	chr2	170712582	170712583	-	0	NA	"intron (NM_172070, intron 1 of 38)"	SVA_B|Other|Other	-28564	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chrX.54458137.+	chrX	54458137	54458138	+	0	NA	Intergenic	AluJb|SINE|Alu	-8716	NM_058163	90121	Hs.522662	NM_058163	ENSG00000158526	TSR2	DT1P1A10|WGG1	"TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)"	protein-coding
chr8.41166067.+	chr8	41166067	41166068	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	923	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr3.61069032.-	chr3	61069032	61069033	-	0	NA	"intron (NM_001166243, intron 2 of 9)"	AluYf4|SINE|Alu	-168101	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr15.93823649.-	chr15	93823649	93823650	-	0	NA	Intergenic	Intergenic	191206	NM_020211	56963	Hs.271277	NM_001166283	ENSG00000182175	RGMA	RGM	"RGM domain family, member A"	protein-coding
chr19.586941.+	chr19	586941	586942	+	0	NA	Intergenic	L2b|LINE|L2	-2952	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr16.30960870.-	chr16	30960870	30960871	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-465	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr19.13497462.-	chr19	13497462	13497463	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119812	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr3.85742648.+	chr3	85742648	85742649	+	0	NA	"intron (NM_001256503, intron 2 of 9)"	AluYk4|SINE|Alu	-32984	NM_153184	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr6.166722234.-	chr6	166722234	166722235	-	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	363	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr17.16540148.+	chr17	16540148	16540149	+	0	NA	"intron (NM_020787, intron 3 of 5)"	AluY|SINE|Alu	17019	NM_020787	57547	Hs.128078	NM_020787	ENSG00000197566	ZNF624	-	zinc finger protein 624	protein-coding
chr22.46805918.+	chr22	46805918	46805919	+	0	NA	"intron (NM_014246, intron 7 of 34)"	CpG-18010	74620	NM_018006	55687	Hs.439524	NM_018006	ENSG00000100416	TRMU	MTO2|MTU1|TRMT|TRMT1|TRNT1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding
chr3.124468919.+	chr3	124468919	124468920	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19706	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr7.156795084.+	chr7	156795084	156795085	+	0	NA	Intergenic	Intergenic	7045	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr2.240129777.-	chr2	240129777	240129778	-	0	NA	"intron (NM_006037, intron 3 of 26)"	AluY|SINE|Alu	12624	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	miscRNA
chr22.51001325.+	chr22	51001325	51001326	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	3	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.227982872.+	chr1	227982872	227982873	+	0	NA	Intergenic	Intergenic	-20546	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr19.38836197.-	chr19	38836197	38836198	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9754	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr8.56098973.-	chr8	56098973	56098974	-	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	-83956	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr7.20445232.+	chr7	20445232	20445233	+	0	NA	"intron (NM_002214, intron 11 of 13)"	AluY|SINE|Alu	74507	NM_002214	3696	Hs.592171	NM_002214		ITGB8	-	"integrin, beta 8"	protein-coding
chr18.19630079.-	chr18	19630079	19630080	-	0	NA	Intergenic	AluY|SINE|Alu	119325	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr7.2515023.-	chr7	2515023	2515024	-	0	NA	Intergenic	Intergenic	37140	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr7.95178764.-	chr7	95178764	95178765	-	0	NA	Intergenic	AluY|SINE|Alu	-47161	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr2.157272367.-	chr2	157272367	157272368	-	0	NA	Intergenic	AluSp|SINE|Alu	19598	NM_001083112	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
chr21.46737206.-	chr21	46737206	46737207	-	0	NA	Intergenic	Intergenic	-29239	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr2.209271720.-	chr2	209271720	209271721	-	0	NA	"5' UTR (NM_005048, exon 1 of 13)"	"5' UTR (NM_005048, exon 1 of 13)"	-165	NM_005048	5746	Hs.570296	NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
chr17.80477407.+	chr17	80477407	80477408	+	0	NA	promoter-TSS (NM_004514)	promoter-TSS (NM_004514)	-187	NM_004514	3607	Hs.591140	NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
chr16.4065725.-	chr16	4065725	4065726	-	0	NA	"intron (NM_001116, intron 2 of 10)"	AluSx1|SINE|Alu	-100461	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr5.171395379.-	chr5	171395379	171395380	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38498	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr16.1821716.-	chr16	1821716	1821717	-	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	6	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chrX.118891936.+	chrX	118891936	118891937	+	0	NA	promoter-TSS (NM_001105576)	promoter-TSS (NM_001105576)	-640	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr2.102972328.-	chr2	102972328	102972329	-	0	NA	Intergenic	CpG	6769	NM_003855	8809	Hs.469521	NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP	interleukin 18 receptor 1	protein-coding
chr20.17595312.-	chr20	17595312	17595313	-	0	NA	"intron (NM_004587, intron 24 of 24)"	CpG	-44713	NM_001011546	11034	Hs.705996	NM_001011546	ENSG00000125868	DSTN	ACTDP|ADF|bA462D18.2	destrin (actin depolymerizing factor)	protein-coding
chr4.123843504.-	chr4	123843504	123843505	-	0	NA	promoter-TSS (NM_145207)	promoter-TSS (NM_145207)	-257	NM_007083	11162	Hs.558459	NM_007083	ENSG00000170917	NUDT6	ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding
chr6.166934795.-	chr6	166934795	166934796	-	0	NA	"intron (NM_001006932, intron 4 of 21)"	"intron (NM_001006932, intron 4 of 21)"	11874	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	miscRNA
chr17.25676755.-	chr17	25676755	25676756	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55649	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chrY.13464382.+	chrY	13464382	13464383	+	0	NA	Intergenic	LSAU|Satellite|Satellite	1069007	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr10.12344446.-	chr10	12344446	12344447	-	0	NA	Intergenic	AluSc8|SINE|Alu	47137	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr17.68536091.-	chr17	68536091	68536092	-	0	NA	Intergenic	AluSx3|SINE|Alu	-370415	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	"potassium inwardly-rectifying channel, subfamily J, member 2"	protein-coding
chr3.1144528.-	chr3	1144528	1144529	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9899	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr11.27740880.-	chr11	27740880	27740881	-	0	NA	"intron (NM_170731, intron 1 of 1)"	CpG	-414	NM_001143807	627	Hs.502182	NM_001143805	ENSG00000176697	BDNF	ANON2|BULN2	brain-derived neurotrophic factor	protein-coding
chr20.43341975.-	chr20	43341975	43341976	-	0	NA	Intergenic	AluSx|SINE|Alu	1910	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr10.123790901.-	chr10	123790901	123790902	-	0	NA	"intron (NM_206862, intron 2 of 22)"	MLT1K|LTR|ERVL-MaLR	-42212	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr3.8635285.+	chr3	8635285	8635286	+	0	NA	Intergenic	Intergenic	21817	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr22.38336420.-	chr22	38336420	38336421	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13234	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr2.43253974.+	chr2	43253974	43253975	+	0	NA	Intergenic	Intergenic	199771	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr17.40536652.+	chr17	40536652	40536653	+	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	3753	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chrY.9930613.-	chrY	9930613	9930614	-	0	NA	Intergenic	CpG	-182206	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr2.218944860.-	chr2	218944860	218944861	-	0	NA	"intron (NR_034176, intron 11 of 13)"	"intron (NR_034176, intron 11 of 13)"	-11122	NM_198483	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
chr14.23233389.+	chr14	23233389	23233390	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2342	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr9.127626457.+	chr9	127626457	127626458	+	0	NA	Intergenic	Intergenic	-2217	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr12.79439078.-	chr12	79439078	79439079	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	355	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr15.93174901.-	chr15	93174901	93174902	-	0	NA	"intron (NM_207446, intron 1 of 2)"	AluY|SINE|Alu	-24130	NM_207446	400451	Hs.702316	NM_207446	ENSG00000185442	FAM174B	-	"family with sequence similarity 174, member B"	protein-coding
chrM.2933.+	chrM	2933	2934	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.58310351.-	chr19	58310351	58310352	-	0	NA	Intergenic	AluY|SINE|Alu	-15930	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr10.45240281.+	chr10	45240281	45240282	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166483	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr12.105389747.-	chr12	105389747	105389748	-	0	NA	Intergenic	AluY|SINE|Alu	-9649	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr1.17298934.-	chr1	17298934	17298935	-	0	NA	"exon (NM_014675, exon 37 of 37)"	"exon (NM_014675, exon 37 of 37)"	-8239	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr20.36619897.-	chr20	36619897	36619898	-	0	NA	"intron (NM_014657, intron 8 of 8)"	"intron (NM_014657, intron 8 of 8)"	-41936	NM_014657	9675	Hs.655481	NM_014657	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
chr22.38336392.+	chr22	38336392	38336393	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13262	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr11.280208.-	chr11	280208	280209	-	0	NA	"exon (NM_001276700, exon 4 of 8)"	"exon (NM_001276700, exon 4 of 8)"	-1638	NM_138329	171389	Hs.352611	NM_001276700	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	"NLR family, pyrin domain containing 6"	protein-coding
chr2.121244100.+	chr2	121244100	121244101	+	0	NA	Intergenic	Intergenic	-20175	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr6.157734042.-	chr6	157734042	157734043	-	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	-11211	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr4.166248588.+	chr4	166248588	166248589	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-230	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr10.131765792.-	chr10	131765792	131765793	-	0	NA	Intergenic	CpG-3433	3701	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr18.63211165.-	chr18	63211165	63211166	-	0	NA	Intergenic	AluY|SINE|Alu	206323	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr2.91776260.+	chr2	91776260	91776261	+	0	NA	Intergenic	Intergenic	71715	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr2.113642164.+	chr2	113642164	113642165	+	0	NA	Intergenic	AluJb|SINE|Alu	-28384	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr17.65335492.-	chr17	65335492	65335493	-	0	NA	Intergenic	AluSx|SINE|Alu	-27229	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr4.186162048.-	chr4	186162048	186162049	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30764	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr13.80726237.-	chr13	80726237	80726238	-	0	NA	Intergenic	L1PA2|LINE|L1	-188849	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr22.43238163.+	chr22	43238163	43238164	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15245	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr16.12210393.-	chr16	12210393	12210394	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139791	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr2.215191432.-	chr2	215191432	215191433	-	0	NA	"intron (NR_047660, intron 14 of 14)"	AluY|SINE|Alu	85029	NM_001080500	402117	Hs.534834	NM_001080500		VWC2L	-	von Willebrand factor C domain containing protein 2-like	protein-coding
chr4.124363930.+	chr4	124363930	124363931	+	0	NA	Intergenic	AluSx3|SINE|Alu	43285	NM_005841	10252	Hs.436944	NM_001258038	ENSG00000164056	SPRY1	hSPRY1	"sprouty homolog 1, antagonist of FGF signaling (Drosophila)"	protein-coding
chr7.2594378.+	chr7	2594378	2594379	+	0	NA	"intron (NM_152743, intron 1 of 13)"	"intron (NM_152743, intron 1 of 13)"	1014	NM_152743	221927	Hs.520623	NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|RMFSL	BRCA1-associated ATM activator 1	protein-coding
chr7.77452606.-	chr7	77452606	77452607	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16841	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr16.49498951.-	chr16	49498951	49498952	-	0	NA	Intergenic	CpG	-91143	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr16.89034101.-	chr16	89034101	89034102	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9403	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr17.45349558.+	chr17	45349558	45349559	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18350	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr2.191513144.+	chr2	191513144	191513145	+	0	NA	promoter-TSS (NM_005966)	promoter-TSS (NM_005966)	-704	NM_005966	4664	Hs.730686	NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1 (EGR1 binding protein 1)	protein-coding
chr12.20930582.+	chr12	20930582	20930583	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-33056	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr22.20137602.-	chr22	20137602	20137603	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	171	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr19.8661286.+	chr19	8661286	8661287	+	0	NA	"exon (NM_030957, exon 10 of 26)"	"exon (NM_030957, exon 10 of 26)"	14302	NM_030957	81794	Hs.657508	NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|WMS|WMS1	"ADAM metallopeptidase with thrombospondin type 1 motif, 10"	protein-coding
chr7.95234869.+	chr7	95234869	95234870	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8944	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr4.1024117.+	chr4	1024117	1024118	+	0	NA	Intergenic	Intergenic	17865	NM_021923	53834	Hs.193326	NM_001004356	ENSG00000127418	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
chr5.171395323.-	chr5	171395323	171395324	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38554	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr17.20059122.-	chr17	20059122	20059123	-	0	NA	promoter-TSS (NM_001033555)	promoter-TSS (NM_001033555)	185	NM_001033554	92521	Hs.431045	NM_001033553	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
chr12.132353161.+	chr12	132353161	132353162	+	0	NA	Intergenic	Intergenic	-26118	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr19.17097031.-	chr19	17097031	17097032	-	0	NA	"intron (NM_015692, intron 13 of 41)"	"intron (NM_015692, intron 13 of 41)"	-40594	NM_015692	27151	Hs.743609	NM_015692	ENSG00000160111	CPAMD8	K-CAP|VIP	"C3 and PZP-like, alpha-2-macroglobulin domain containing 8"	protein-coding
chr17.2311341.+	chr17	2311341	2311342	+	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	-7083	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chrX.129097397.+	chrX	129097397	129097398	+	0	NA	Intergenic	Intergenic	-41767	NM_021946	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
chr7.21370290.+	chr7	21370290	21370291	+	0	NA	Intergenic	MER52D|LTR|ERV1	-97399	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chrX.141491528.-	chrX	141491528	141491529	-	0	NA	Intergenic	AluY|SINE|Alu	198452	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr20.33062717.+	chr20	33062717	33062718	+	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	8587	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr22.28197551.-	chr22	28197551	28197552	-	0	NA	promoter-TSS (NM_002430)	promoter-TSS (NM_002430)	65	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
chr16.73461745.-	chr16	73461745	73461746	-	0	NA	Intergenic	AluSg|SINE|Alu	-41041	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr19.4065795.-	chr19	4065795	4065796	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1021	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr6.138984629.+	chr6	138984629	138984630	+	0	NA	Intergenic	AluSp|SINE|Alu	-28176	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr1.153961791.+	chr1	153961791	153961792	+	0	NA	Intergenic	AluY|SINE|Alu	-1448	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr3.128194211.-	chr3	128194211	128194212	-	0	NA	Intergenic	Intergenic	8120	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr9.28773112.-	chr9	28773112	28773113	-	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	53809	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr4.166248576.+	chr4	166248576	166248577	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-242	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr9.95546682.+	chr9	95546682	95546683	+	0	NA	Intergenic	AluSq2|SINE|Alu	-19599	NM_001003800	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr2.240980305.-	chr2	240980305	240980306	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2094	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr8.146024450.+	chr8	146024450	146024451	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	189	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr19.45451223.-	chr19	45451223	45451224	-	0	NA	"intron (NR_037932, intron 3 of 5)"	AluSx3|SINE|Alu	-1984	NM_000483	344	Hs.75615	NM_000483	ENSG00000224916	APOC2	APO-CII|APOC-II	apolipoprotein C-II	protein-coding
chr4.77348113.-	chr4	77348113	77348114	-	0	NA	Intergenic	AluY|SINE|Alu	8140	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr1.115936722.+	chr1	115936722	115936723	+	0	NA	Intergenic	AluYc|SINE|Alu	-55865	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
chr1.17267916.+	chr1	17267916	17267917	+	0	NA	"intron (NM_014675, intron 13 of 36)"	AluSx|SINE|Alu	19471	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr12.133328253.+	chr12	133328253	133328254	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10198	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr1.12686483.+	chr1	12686483	12686484	+	0	NA	Intergenic	AluJb|SINE|Alu	-8663	NM_004753	9249	Hs.289347	NM_004753	ENSG00000162496	DHRS3	DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding
chr5.5953946.-	chr5	5953946	5953947	-	0	NA	Intergenic	Intergenic	-383459	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr7.156795119.+	chr7	156795119	156795120	+	0	NA	Intergenic	Intergenic	7010	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr16.4303723.-	chr16	4303723	4303724	-	0	NA	promoter-TSS (NR_039999)	promoter-TSS (NR_039999)	-67	NR_039999	100507501	Hs.632979	NR_039999	ENSG00000262468	LOC100507501	-	uncharacterized LOC100507501	miscRNA
chr9.133773579.+	chr9	133773579	133773580	+	0	NA	Intergenic	Intergenic	-4354	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr5.76926659.-	chr5	76926659	76926660	-	0	NA	"intron (NM_032109, intron 2 of 2)"	CpG	-7863	NM_032109	23440	Hs.202247	NM_032109		OTP	-	orthopedia homeobox	protein-coding
chr19.21789928.-	chr19	21789928	21789929	-	0	NA	Intergenic	SVA_D|Other|Other	-101491	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr19.50630642.+	chr19	50630642	50630643	+	0	NA	Intergenic	AluSx1|SINE|Alu	1137	NR_024226	100169955	Hs.723094	NR_024226		SNAR-A9	-	small ILF3/NF90-associated RNA A9	snRNA
chr19.48476356.+	chr19	48476356	48476357	+	0	NA	"intron (NM_001128326, intron 5 of 5)"	AluY|SINE|Alu	17417	NR_024217	100170218	Hs.723092	NR_024217		SNAR-C2	-	small ILF3/NF90-associated RNA C2	snRNA
chr18.14044798.+	chr18	14044798	14044799	+	0	NA	Intergenic	AluY|SINE|Alu	87691	NM_145287	162655	Hs.352635	NM_145287		ZNF519	HsT2362	zinc finger protein 519	protein-coding
chr9.68414087.-	chr9	68414087	68414088	-	0	NA	Intergenic	Intergenic	-40288	NR_033907	642236	Hs.650100	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
chr12.123921349.+	chr12	123921349	123921350	+	0	NA	promoter-TSS (NM_145058)	promoter-TSS (NM_145058)	-85	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr2.58077682.+	chr2	58077682	58077683	+	0	NA	Intergenic	Intergenic	-196095	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr3.126635665.-	chr3	126635665	126635666	-	0	NA	"intron (NM_032343, intron 6 of 7)"	"intron (NM_032343, intron 6 of 7)"	71772	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
chr1.171662937.+	chr1	171662937	171662938	+	0	NA	Intergenic	SVA_C|Other|Other	-41164	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr20.43342077.-	chr20	43342077	43342078	-	0	NA	Intergenic	AluSx|SINE|Alu	1808	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr16.65732369.+	chr16	65732369	65732370	+	0	NA	Intergenic	AluY|SINE|Alu	-122166	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LOC283867	-	uncharacterized LOC283867	miscRNA
chr21.45243645.+	chr21	45243645	45243646	+	0	NA	Intergenic	Intergenic	-11197	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr11.68671234.+	chr11	68671234	68671235	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	69	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr7.1071472.-	chr7	1071472	1071473	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	8810	NR_029898	442907		NR_029898		MIR339	MIRN339|hsa-mir-339	microRNA 339	miscRNA
chr19.9311337.-	chr19	9311337	9311338	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14210	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr7.95234872.+	chr7	95234872	95234873	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8947	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr3.49047731.-	chr3	49047731	49047732	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3094	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr19.18180453.-	chr19	18180453	18180454	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17244	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr13.114446704.+	chr13	114446704	114446705	+	0	NA	Intergenic	Intergenic	7358	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr4.4041372.-	chr4	4041372	4041373	-	0	NA	Intergenic	AluYb9|SINE|Alu	84224	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chrX.152916378.-	chrX	152916378	152916379	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8481	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr19.1871368.-	chr19	1871368	1871369	-	0	NA	Intergenic	Intergenic	7804	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr6.71104388.+	chr6	71104388	71104389	+	0	NA	Intergenic	MER48|LTR|ERV1	-18719	NM_020819	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr7.1542269.-	chr7	1542269	1542270	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1749	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr12.133328247.+	chr12	133328247	133328248	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10204	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr2.90482955.+	chr2	90482955	90482956	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365020	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr6.2221732.-	chr6	2221732	2221733	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24136	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr11.18743343.+	chr11	18743343	18743344	+	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	4434	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr4.114652892.+	chr4	114652892	114652893	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30191	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr3.98624718.+	chr3	98624718	98624719	+	0	NA	Intergenic	AluY|SINE|Alu	-4185	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr6.157008661.-	chr6	157008661	157008662	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	90403	NM_017519	57492	Hs.744461	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
chr1.120270177.-	chr1	120270177	120270178	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15758	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr2.10952964.-	chr2	10952964	10952965	-	0	NA	promoter-TSS (NM_005742)	promoter-TSS (NM_005742)	4	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr19.21789936.-	chr19	21789936	21789937	-	0	NA	Intergenic	SVA_D|Other|Other	-101499	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr18.29729772.-	chr18	29729772	29729773	-	0	NA	Intergenic	AluSp|SINE|Alu	40215	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr1.54839940.-	chr1	54839940	54839941	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32039	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr8.3501049.-	chr8	3501049	3501050	-	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	-1351279	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr1.28895951.+	chr1	28895951	28895952	+	0	NA	"intron (NM_017846, intron 6 of 8)"	AluY|SINE|Alu	9383	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	"small nucleolar RNA, C/D box 99"	snoRNA
chr1.118148109.-	chr1	118148109	118148110	-	0	NA	promoter-TSS (NM_017709)	promoter-TSS (NM_017709)	495	NM_017709	54855	Hs.356216	NM_017709	ENSG00000183508	FAM46C	-	"family with sequence similarity 46, member C"	protein-coding
chr13.100548623.+	chr13	100548623	100548624	+	0	NA	"3' UTR (NM_206808, exon 9 of 9)"	"3' UTR (NM_206808, exon 9 of 9)"	75555	NM_033132	85416	Hs.508570	NM_033132		ZIC5	-	Zic family member 5	protein-coding
chr1.3301898.+	chr1	3301898	3301899	+	0	NA	"intron (NM_199454, intron 4 of 16)"	"intron (NM_199454, intron 4 of 16)"	-69249	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr18.12264751.+	chr18	12264751	12264752	+	0	NA	"intron (NR_036468, intron 3 of 4)"	AluY|SINE|Alu	10391	NR_036468	1149	Hs.249129	NM_001279		CIDEA	CIDE-A	cell death-inducing DFFA-like effector a	protein-coding
chr16.17617287.-	chr16	17617287	17617288	-	0	NA	Intergenic	AluSz|SINE|Alu	52549	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr13.50177138.-	chr13	50177138	50177139	-	0	NA	Intergenic	AluY|SINE|Alu	17419	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr2.92172344.+	chr2	92172344	92172345	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43185	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr19.7123156.-	chr19	7123156	7123157	-	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	-53685	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr14.75098145.+	chr14	75098145	75098146	+	0	NA	Intergenic	Intergenic	-19111	NM_000428	4053	Hs.597522	NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
chr11.75141436.-	chr11	75141436	75141437	-	0	NA	"exon (NM_001039548, exon 1 of 6)"	"exon (NM_001039548, exon 1 of 6)"	-238	NM_001039548	283212	Hs.292451	NM_173583	ENSG00000149243	KLHL35	-	kelch-like family member 35	protein-coding
chr19.21324962.-	chr19	21324962	21324963	-	0	NA	"5' UTR (NM_133473, exon 1 of 5)"	"5' UTR (NM_133473, exon 1 of 5)"	-122	NM_133473	170959	Hs.687547	NM_133473	ENSG00000196705	ZNF431	-	zinc finger protein 431	protein-coding
chr5.3188192.-	chr5	3188192	3188193	-	0	NA	Intergenic	CpG	-348016	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr12.34191967.-	chr12	34191967	34191968	-	0	NA	Intergenic	AluSp|SINE|Alu	-16751	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.157198642.+	chr2	157198642	157198643	+	0	NA	Intergenic	CpG	-9355	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr5.176292938.-	chr5	176292938	176292939	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33395	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr14.23706383.-	chr14	23706383	23706384	-	0	NA	Intergenic	AluSz|SINE|Alu	-48926	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr13.31023957.+	chr13	31023957	31023958	+	0	NA	Intergenic	AluSq2|SINE|Alu	16124	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr17.18575654.-	chr17	18575654	18575655	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-840	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr19.2424681.+	chr19	2424681	2424682	+	0	NA	TTS (NM_012458)	TTS (NM_012458)	3194	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr4.26862254.+	chr4	26862254	26862255	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-59	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr18.11959898.+	chr18	11959898	11959899	+	0	NA	Intergenic	SVA_D|Other|Other	-21529	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr11.16894157.-	chr11	16894157	16894158	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-134009	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr9.80898953.-	chr9	80898953	80898954	-	0	NA	Intergenic	LTR12|LTR|ERV1	13106	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr6.157734009.+	chr6	157734009	157734010	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11244	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr8.99416780.-	chr8	99416780	99416781	-	0	NA	Intergenic	AluYk4|SINE|Alu	22470	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr10.120946136.+	chr10	120946136	120946137	+	0	NA	Intergenic	AluY|SINE|Alu	-7791	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr1.21759003.+	chr1	21759003	21759004	+	0	NA	Intergenic	AluSx|SINE|Alu	-7580	NR_046176	84224	Hs.325422	NM_001256416	ENSG00000142794	NBPF3	AE2	"neuroblastoma breakpoint family, member 3"	protein-coding
chr5.133968964.-	chr5	133968964	133968965	-	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	431	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr18.43723289.+	chr18	43723289	43723290	+	0	NA	Intergenic	AluY|SINE|Alu	-30699	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr10.32358162.-	chr10	32358162	32358163	-	0	NA	Intergenic	AluSg7|SINE|Alu	12791	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr2.44294160.+	chr2	44294160	44294161	+	0	NA	Intergenic	SVA_D|Other|Other	-71016	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr4.166248600.+	chr4	166248600	166248601	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-218	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.197418618.+	chr1	197418618	197418619	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181284	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr6.45365127.-	chr6	45365127	45365128	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19339	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr2.105760711.-	chr2	105760711	105760712	-	0	NA	Intergenic	CpG	97489	NM_007227	11250	Hs.590903	NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
chr3.8721284.-	chr3	8721284	8721285	-	0	NA	Intergenic	Intergenic	27520	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr9.130830729.+	chr9	130830729	130830730	+	0	NA	"exon (NM_001006641, exon 1 of 10)"	"exon (NM_001006641, exon 1 of 10)"	250	NM_001006641	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr12.133020969.-	chr12	133020969	133020970	-	0	NA	Intergenic	Intergenic	46188	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr11.134026108.+	chr11	134026108	134026109	+	0	NA	"intron (NM_015261, intron 32 of 34)"	"intron (NM_015261, intron 32 of 34)"	68318	NM_015261	23310	Hs.438550	NM_015261	ENSG00000151503	NCAPD3	CAP-D3|hCAP-D3|hHCP-6|hcp-6	"non-SMC condensin II complex, subunit D3"	protein-coding
chr19.41868048.-	chr19	41868048	41868049	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1823	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr3.39425755.+	chr3	39425755	39425756	+	0	NA	"intron (NM_017875, intron 1 of 6)"	CpG	940	NM_017875	54977	Hs.369615	NM_017875	ENSG00000144659	SLC25A38	-	"solute carrier family 25, member 38"	protein-coding
chr3.42642474.+	chr3	42642474	42642475	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	98	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr9.36859982.+	chr9	36859982	36859983	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4323	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr7.13141795.+	chr7	13141795	13141796	+	0	NA	Intergenic	SVA_D|Other|Other	414884	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr2.38191072.-	chr2	38191072	38191073	-	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	-13476	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr2.136760871.+	chr2	136760871	136760872	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17649	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr13.45131203.+	chr13	45131203	45131204	+	0	NA	"intron (NM_183422, intron 1 of 2)"	AluSp|SINE|Alu	-18829	NR_038381	641467	Hs.624196	NR_038381		TSC22D1-AS1	-	TSC22D1 antisense RNA 1	miscRNA
chr17.810063.+	chr17	810063	810064	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42712	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr14.105736155.+	chr14	105736155	105736156	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20414	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr16.19394745.-	chr16	19394745	19394746	-	0	NA	Intergenic	Intergenic	27312	NM_001105249	79838	Hs.115838	NM_001105248	ENSG00000103534	TMC5	-	transmembrane channel-like 5	protein-coding
chr18.3215090.+	chr18	3215090	3215091	+	0	NA	"exon (NM_019856, exon 2 of 37)"	"exon (NM_019856, exon 2 of 37)"	5016	NM_019856	8736	Hs.464469	NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
chr15.101817454.-	chr15	101817454	101817455	-	0	NA	"intron (NM_203472, intron 1 of 6)"	CpG	-246	NM_018445	55829	Hs.32148	NM_018445	ENSG00000131871	VIMP	ADO15|SBBI8|SELS|SEPS1	VCP-interacting membrane protein	protein-coding
chr16.917617.-	chr16	917617	917618	-	0	NA	"intron (NR_033646, intron 12 of 12)"	"intron (NR_033646, intron 12 of 12)"	-62174	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr9.139877019.+	chr9	139877019	139877020	+	0	NA	promoter-TSS (NM_207510)	promoter-TSS (NM_207510)	-426	NM_207510	401562	Hs.695210	NM_207510	ENSG00000214402	LCNL1	-	lipocalin-like 1	protein-coding
chr16.632106.-	chr16	632106	632107	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7251	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr15.76627323.+	chr15	76627323	76627324	+	0	NA	Intergenic	AluSg|SINE|Alu	-1824	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr3.34527487.+	chr3	34527487	34527488	+	0	NA	Intergenic	AluSz6|SINE|Alu	687424	NM_001162429	10015	Hs.475896	NM_001162429	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
chrX.53808346.+	chrX	53808346	53808347	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94649	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr20.57575048.+	chr20	57575048	57575049	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7261	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr8.37214908.-	chr8	37214908	37214909	-	0	NA	Intergenic	AluY|SINE|Alu	338393	NM_025069	80139	Hs.744591	NM_025069		ZNF703	ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
chr10.133869263.+	chr10	133869263	133869264	+	0	NA	Intergenic	Intergenic	-49050	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr15.89721765.+	chr15	89721765	89721766	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43157	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr2.127899172.-	chr2	127899172	127899173	-	0	NA	Intergenic	Intergenic	34269	NM_139344	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
chrX.113575426.+	chrX	113575426	113575427	+	0	NA	Intergenic	AluJb|SINE|Alu	-243125	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr15.80544251.+	chr15	80544251	80544252	+	0	NA	Intergenic	CpG	89896	NR_033833	283688	Hs.525933	NR_033833	ENSG00000259361	LOC283688	-	uncharacterized LOC283688	miscRNA
chr16.81282948.+	chr16	81282948	81282949	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10652	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr19.59086073.-	chr19	59086073	59086074	-	0	NA	promoter-TSS (NR_026052)	promoter-TSS (NR_026052)	693	NR_026052	65996	Hs.541177	NM_023939	ENSG00000213753	MGC2752	-	CENPB DNA-binding domains containing 1 pseudogene	pseudo
chr11.69189577.+	chr11	69189577	69189578	+	0	NA	Intergenic	Intergenic	127955	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr6.8388454.+	chr6	8388454	8388455	+	0	NA	Intergenic	LTR9|LTR|ERV1	47340	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr3.170641493.-	chr3	170641493	170641494	-	0	NA	Intergenic	SVA_C|Other|Other	15067	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr5.165696012.-	chr5	165696012	165696013	-	0	NA	Intergenic	AluY|SINE|Alu	1015831	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr7.158671007.-	chr7	158671007	158671008	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21738	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr17.48422586.-	chr17	48422586	48422587	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	807	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr2.232557249.+	chr2	232557249	232557250	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15986	NM_002823	5757	Hs.459927	NM_001099285	ENSG00000187514	PTMA	TMSA	"prothymosin, alpha"	protein-coding
chr7.2944160.-	chr7	2944160	2944161	-	0	NA	Intergenic	Intergenic	60201	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr4.26589765.-	chr4	26589765	26589766	-	0	NA	"intron (NM_018317, intron 1 of 20)"	AluY|SINE|Alu	-4219	NM_018317	55296	Hs.479403	NM_018317	ENSG00000109680	TBC1D19	-	"TBC1 domain family, member 19"	protein-coding
chr19.1755459.-	chr19	1755459	1755460	-	0	NA	"intron (NM_001080488, intron 1 of 1)"	CpG	-1797	NM_001080488	390874	Hs.654347	NM_001080488		ONECUT3	OC3	one cut homeobox 3	protein-coding
chr17.65843580.-	chr17	65843580	65843581	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21800	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr9.108210429.-	chr9	108210429	108210430	-	0	NA	"5' UTR (NM_001145313, exon 1 of 14)"	"5' UTR (NM_001145313, exon 1 of 14)"	-104	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr17.37768964.-	chr17	37768964	37768965	-	0	NA	Intergenic	Intergenic	4789	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr14.44126257.+	chr14	44126257	44126258	+	0	NA	Intergenic	AluSc|SINE|Alu	850242	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr2.71562016.+	chr2	71562016	71562017	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3131	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr16.31103089.+	chr16	31103089	31103090	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2959	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr13.114899227.-	chr13	114899227	114899228	-	0	NA	Intergenic	Intergenic	1132	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr12.34492682.+	chr12	34492682	34492683	+	0	NA	Intergenic	GSATII|Satellite|centr	317466	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chrX.18849788.+	chrX	18849788	18849789	+	0	NA	Intergenic	AluY|SINE|Alu	-58626	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr16.67519973.+	chr16	67519973	67519974	+	0	NA	Intergenic	AluY|SINE|Alu	-2257	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr21.47343977.-	chr21	47343977	47343978	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57686	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chrX.129091143.-	chrX	129091143	129091144	-	0	NA	Intergenic	CpG	48021	NM_021946	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
chr14.32736841.-	chr14	32736841	32736842	-	0	NA	Intergenic	AluY|SINE|Alu	61638	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
chr20.5213495.+	chr20	5213495	5213496	+	0	NA	Intergenic	AluJr4|SINE|Alu	81520	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr21.46737134.-	chr21	46737134	46737135	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29167	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr19.4031915.+	chr19	4031915	4031916	+	0	NA	"intron (NM_015897, intron 7 of 10)"	"intron (NM_015897, intron 7 of 10)"	24166	NM_015897	51588	Hs.105779	NM_015897		PIAS4	PIASY|Piasg|ZMIZ6	"protein inhibitor of activated STAT, 4"	protein-coding
chr12.57177839.-	chr12	57177839	57177840	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20731	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr9.139119894.+	chr9	139119894	139119895	+	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	17793	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr1.24513570.-	chr1	24513570	24513571	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-195	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr7.127743772.+	chr7	127743772	127743773	+	0	NA	Intergenic	Intergenic	21859	NR_030324	693178		NR_030324		MIR593	MIRN593|hsa-mir-593	microRNA 593	miscRNA
chr11.64120595.-	chr11	64120595	64120596	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6030	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr12.123755251.+	chr12	123755251	123755252	+	0	NA	promoter-TSS (NM_001270433)	promoter-TSS (NM_001270433)	398	NR_073008	8099	Hs.433201	NM_001270433	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin-dependent kinase 2 associated protein 1	protein-coding
chr16.22879700.-	chr16	22879700	22879701	-	0	NA	"intron (NM_006043, intron 1 of 1)"	AluSc|SINE|Alu	-53840	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr16.80278043.+	chr16	80278043	80278044	+	0	NA	Intergenic	SVA_F|Other|Other	-296811	NM_130897	83657	Hs.98849	NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	"dynein, light chain, roadblock-type 2"	protein-coding
chr12.34492651.+	chr12	34492651	34492652	+	0	NA	Intergenic	GSATII|Satellite|centr	317435	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr17.1165716.-	chr17	1165716	1165717	-	0	NA	Intergenic	AluSg|SINE|Alu	8142	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr8.136968869.+	chr8	136968869	136968870	+	0	NA	Intergenic	Intergenic	499153	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	"KH domain containing, RNA binding, signal transduction associated 3"	protein-coding
chr7.12933855.+	chr7	12933855	12933856	+	0	NA	Intergenic	AluY|SINE|Alu	206944	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr7.5629203.+	chr7	5629203	5629204	+	0	NA	Intergenic	AluJo|SINE|Alu	-3233	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr6.157734069.-	chr6	157734069	157734070	-	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	-11184	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr22.41521449.-	chr22	41521449	41521450	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32835	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr1.2887366.-	chr1	2887366	2887367	-	0	NA	Intergenic	Intergenic	50680	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr19.14156278.-	chr19	14156278	14156279	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13693	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr8.20290477.+	chr8	20290477	20290478	+	0	NA	Intergenic	Intergenic	157193	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	miscRNA
chr3.36494757.-	chr3	36494757	36494758	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72660	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr6.107349010.+	chr6	107349010	107349011	+	0	NA	promoter-TSS (NM_001142468)	promoter-TSS (NM_001142468)	-397	NM_001142470	51250	Hs.486084	NM_001142468	ENSG00000130349	C6orf203	PRED31|RP11-59I9.1	chromosome 6 open reading frame 203	protein-coding
chr5.176292831.+	chr5	176292831	176292832	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33502	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr2.129079914.+	chr2	129079914	129079915	+	0	NA	Intergenic	CpG	-3743	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chrY.9930531.-	chrY	9930531	9930532	-	0	NA	Intergenic	5S|rRNA|rRNA	-182124	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr9.138065706.-	chr9	138065706	138065707	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7749	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr12.133328158.+	chr12	133328158	133328159	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10293	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr13.111268084.+	chr13	111268084	111268085	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	153	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr7.95234895.+	chr7	95234895	95234896	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8970	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr16.87446538.+	chr16	87446538	87446539	+	0	NA	"exon (NM_015144, exon 12 of 13)"	"exon (NM_015144, exon 12 of 13)"	20737	NM_022818	81631	Hs.356061	NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule-associated protein 1 light chain 3 beta	protein-coding
chr17.78397556.-	chr17	78397556	78397557	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4338	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr2.101214341.-	chr2	101214341	101214342	-	0	NA	Intergenic	AluY|SINE|Alu	-34923	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr5.5953950.-	chr5	5953950	5953951	-	0	NA	Intergenic	Intergenic	-383455	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr9.7934792.-	chr9	7934792	7934793	-	0	NA	Intergenic	AluY|SINE|Alu	134993	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr10.51545822.+	chr10	51545822	51545823	+	0	NA	Intergenic	AluY|SINE|Alu	-3731	NM_002443	4477	Hs.255462	NM_002443	ENSG00000138294	MSMB	HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94	"microseminoprotein, beta-"	protein-coding
chr6.160985674.+	chr6	160985674	160985675	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53518	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr11.100596555.-	chr11	100596555	100596556	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38148	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr3.131447505.+	chr3	131447505	131447506	+	0	NA	"intron (NM_130808, intron 2 of 15)"	AluY|SINE|Alu	-225645	NM_007208	11222	Hs.205163	NM_007208	ENSG00000114686	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
chr3.128161111.+	chr3	128161111	128161112	+	0	NA	Intergenic	Intergenic	-21326	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr2.172379811.+	chr2	172379811	172379812	+	0	NA	"intron (NM_001127383, intron 1 of 2)"	CpG	945	NM_001127383	79901	Hs.221941	NM_001127383	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
chr12.110276558.-	chr12	110276558	110276559	-	0	NA	Intergenic	AluSg|SINE|Alu	5346	NM_021625	59341	Hs.506713	NM_001177428	ENSG00000111199	TRPV4	CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC	"transient receptor potential cation channel, subfamily V, member 4"	protein-coding
chr17.11143870.+	chr17	11143870	11143871	+	0	NA	promoter-TSS (NM_001173462)	promoter-TSS (NM_001173462)	-870	NM_207386	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr2.38595072.+	chr2	38595072	38595073	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluSq2|SINE|Alu	9360	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr19.6307848.+	chr19	6307848	6307849	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25792	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr5.178157713.-	chr5	178157713	178157714	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	10	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr17.12456637.-	chr17	12456637	12456638	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3352	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr12.56123993.+	chr12	56123993	56123994	+	0	NA	promoter-TSS (NM_001257389)	promoter-TSS (NM_001257389)	-536	NM_001257389	967	Hs.445570	NM_001257389	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
chr22.18839308.+	chr22	18839308	18839309	+	0	NA	Intergenic	Intergenic	-54428	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr7.130418544.+	chr7	130418544	130418545	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	344	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr6.126100204.+	chr6	126100204	126100205	+	0	NA	Intergenic	AluY|SINE|Alu	-2103	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr1.61548526.+	chr1	61548526	61548527	+	0	NA	"intron (NM_005595, intron 1 of 9)"	GC_rich|Low_complexity|Low_complexity	546	NM_001134673	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr2.43254209.-	chr2	43254209	43254210	-	0	NA	Intergenic	Intergenic	-199536	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr13.20343686.-	chr13	20343686	20343687	-	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	-13473	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr14.101892662.+	chr14	101892662	101892663	+	0	NA	Intergenic	AluY|SINE|Alu	129351	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr3.133292588.+	chr3	133292588	133292589	+	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	154	NM_017548	55573	Hs.518265	NM_001134422	ENSG00000091527	CDV3	H41	CDV3 homolog (mouse)	protein-coding
chr13.55825138.-	chr13	55825138	55825139	-	0	NA	Intergenic	AluY|SINE|Alu	-76549	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr7.66093731.+	chr7	66093731	66093732	+	0	NA	promoter-TSS (NM_001167961)	promoter-TSS (NM_001167961)	-137	NM_153033	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr4.42658278.-	chr4	42658278	42658279	-	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	-844	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr1.197754717.-	chr1	197754717	197754718	-	0	NA	Intergenic	AluY|SINE|Alu	10094	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr6.46742356.-	chr6	46742356	46742357	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18738	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr3.99923801.-	chr3	99923801	99923802	-	0	NA	Intergenic	AluSq|SINE|Alu	-19133	NR_028358	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30C	CDC50C	transmembrane protein 30C	pseudo
chr9.137127481.+	chr9	137127481	137127482	+	0	NA	Intergenic	Intergenic	-90835	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr10.88698865.+	chr10	88698865	88698866	+	0	NA	"intron (NM_024756, intron 6 of 6)"	AluSp|SINE|Alu	18560	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chr16.71814161.-	chr16	71814161	71814162	-	0	NA	"intron (NM_001030007, intron 2 of 23)"	AluSz|SINE|Alu	21771	NR_003059	692111		NR_003059		SNORD71	HBII-239|MIRN768|hsa-mir-768	"small nucleolar RNA, C/D box 71"	snoRNA
chr17.78397730.-	chr17	78397730	78397731	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4512	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr17.18575708.+	chr17	18575708	18575709	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	786	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr21.28337961.+	chr21	28337961	28337962	+	0	NA	"exon (NM_007038, exon 1 of 8)"	"exon (NM_007038, exon 1 of 8)"	1478	NM_007038	11096	Hs.58324	NM_007038	ENSG00000154736	ADAMTS5	ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2	"ADAM metallopeptidase with thrombospondin type 1 motif, 5"	protein-coding
chr20.13660703.+	chr20	13660703	13660704	+	0	NA	Intergenic	AluY|SINE|Alu	-41120	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr7.3828921.+	chr7	3828921	3828922	+	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	-340396	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr19.17097034.+	chr19	17097034	17097035	+	0	NA	"intron (NM_015692, intron 13 of 41)"	"intron (NM_015692, intron 13 of 41)"	40591	NM_015692	27151	Hs.743609	NM_015692	ENSG00000160111	CPAMD8	K-CAP|VIP	"C3 and PZP-like, alpha-2-macroglobulin domain containing 8"	protein-coding
chr18.66365978.-	chr18	66365978	66365979	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16375	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr16.673465.+	chr16	673465	673466	+	0	NA	"intron (NM_001172663, intron 4 of 6)"	AluY|SINE|Alu	-7547	NM_053284	117166	Hs.345818	NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	"WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1"	protein-coding
chr8.26241040.-	chr8	26241040	26241041	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-517	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr12.56042589.-	chr12	56042589	56042590	-	0	NA	Intergenic	SVA_B|Other|Other	-11913	NM_206899	121130	Hs.554551	NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	"olfactory receptor, family 10, subfamily P, member 1"	protein-coding
chr19.19051667.+	chr19	19051667	19051668	+	0	NA	promoter-TSS (NM_001145722)	promoter-TSS (NM_001145722)	374	NM_004838	9454	Hs.720208	NM_001145721	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer homolog 3 (Drosophila)	protein-coding
chr19.47628014.+	chr19	47628014	47628015	+	0	NA	Intergenic	AluY|SINE|Alu	-6066	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr2.224810023.+	chr2	224810023	224810024	+	0	NA	promoter-TSS (NM_020830)	promoter-TSS (NM_020830)	29	NM_020830	57590	Hs.368359	NM_020830	ENSG00000085449	WDFY1	FENS-1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
chr19.45660389.-	chr19	45660389	45660390	-	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	-3019	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr22.38336368.-	chr22	38336368	38336369	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13286	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr5.162887008.-	chr5	162887008	162887009	-	0	NA	promoter-TSS (NM_012484)	promoter-TSS (NM_012484)	-135	NM_145266	134492	Hs.140443	NM_145266	ENSG00000170584	NUDCD2	-	NudC domain containing 2	protein-coding
chr9.113201957.-	chr9	113201957	113201958	-	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	101832	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chr13.59346935.-	chr13	59346935	59346936	-	0	NA	Intergenic	AluY|SINE|Alu	-1141146	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr4.185656723.+	chr4	185656723	185656724	+	0	NA	Intergenic	AluY|SINE|Alu	-1437	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr22.18251501.-	chr22	18251501	18251502	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4476	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr17.4708656.-	chr17	4708656	4708657	-	0	NA	Intergenic	AluSp|SINE|Alu	1740	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr3.4664351.+	chr3	4664351	4664352	+	0	NA	"intron (NM_002222, intron 4 of 57)"	AluSc|SINE|Alu	128923	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	miscRNA
chr11.12544176.-	chr11	12544176	12544177	-	0	NA	"intron (NM_018222, intron 12 of 12)"	AluSq2|SINE|Alu	-145150	NM_018222	55742	Hs.432914	NM_018222		PARVA	CH-ILKBP|MXRA2	"parvin, alpha"	protein-coding
chr22.43670606.-	chr22	43670606	43670607	-	0	NA	"intron (NM_173050, intron 4 of 21)"	"intron (NM_173050, intron 4 of 21)"	-68788	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr22.40126802.-	chr22	40126802	40126803	-	0	NA	Intergenic	AluY|SINE|Alu	-160044	NM_001003406	8911	Hs.125116	NM_001003406	ENSG00000100346	CACNA1I	Cav3.3|ca(v)3.3	"calcium channel, voltage-dependent, T type, alpha 1I subunit"	protein-coding
chr2.27588383.-	chr2	27588383	27588384	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4536	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr1.78230455.-	chr1	78230455	78230456	-	0	NA	Intergenic	AluSz|SINE|Alu	4891	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr7.149418077.+	chr7	149418077	149418078	+	0	NA	"exon (NM_032534, exon 4 of 17)"	"exon (NM_032534, exon 4 of 17)"	5929	NM_032534	84626	Hs.299560	NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
chr20.3079551.+	chr20	3079551	3079552	+	0	NA	Intergenic	AluSc8|SINE|Alu	-8006	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	miscRNA
chr15.44038906.-	chr15	44038906	44038907	-	0	NA	promoter-TSS (NR_002318)	promoter-TSS (NR_002318)	-316	NM_005313	2923	Hs.591095	NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HsT17083|P58|PI-PLC	"protein disulfide isomerase family A, member 3"	protein-coding
chr7.25058035.-	chr7	25058035	25058036	-	0	NA	Intergenic	SVA_F|Other|Other	38275	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr12.77339572.-	chr12	77339572	77339573	-	0	NA	Intergenic	AluY|SINE|Alu	66773	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr1.36992481.+	chr1	36992481	36992482	+	0	NA	Intergenic	AluY|SINE|Alu	-43566	NM_156039	1441	Hs.524517	NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
chr21.43157394.-	chr21	43157394	43157395	-	0	NA	Intergenic	Intergenic	-20798	NR_024028	54089	Hs.98186	NR_024028	ENSG00000232401	LINC00112	C21orf22|NCRNA00112	long intergenic non-protein coding RNA 112	miscRNA
chr3.42055720.+	chr3	42055720	42055721	+	0	NA	Intergenic	CpG	-52060	NM_017886	54986	Hs.656192	NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51-like kinase 4 (C. elegans)	protein-coding
chr7.1587909.+	chr7	1587909	1587910	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8157	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr2.71357869.-	chr2	71357869	71357870	-	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-425	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr17.61850790.-	chr17	61850790	61850791	-	0	NA	promoter-TSS (NM_203499)	promoter-TSS (NM_203499)	-298	NM_020198	57003	Hs.202011	NM_020198	ENSG00000108588	CCDC47	MSTP041	coiled-coil domain containing 47	protein-coding
chr18.7129703.-	chr18	7129703	7129704	-	0	NA	Intergenic	AluSx|SINE|Alu	11890	NM_005559	284217	Hs.270364	NM_005559	ENSG00000101680	LAMA1	LAMA|S-LAM-alpha	"laminin, alpha 1"	protein-coding
chrX.39680375.-	chrX	39680375	39680376	-	0	NA	Intergenic	CpG	-276344	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr17.80930553.-	chr17	80930553	80930554	-	0	NA	"intron (NM_001009905, intron 6 of 12)"	"intron (NM_001009905, intron 6 of 12)"	-79133	NM_001009905	146712	Hs.607824	NM_001009905	ENSG00000175711	B3GNTL1	B3GNT8	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1"	protein-coding
chrX.68786592.+	chrX	68786592	68786593	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49319	NM_001005610	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr21.20831254.+	chr21	20831254	20831255	+	0	NA	Intergenic	AluYf4|SINE|Alu	-1055284	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chr19.41109684.+	chr19	41109684	41109685	+	0	NA	"intron (NM_001042545, intron 1 of 29)"	CpG	2407	NM_001042545	8425	Hs.466766	NM_001042544	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
chr10.104255222.-	chr10	104255222	104255223	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7290	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr4.1554657.+	chr4	1554657	1554658	+	0	NA	Intergenic	CpG	131061	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr1.151573460.-	chr1	151573460	151573461	-	0	NA	Intergenic	SVA_E|Other|Other	11202	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr5.22207062.-	chr5	22207062	22207063	-	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	-64601	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr3.38106455.+	chr3	38106455	38106456	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25759	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr6.114067419.+	chr6	114067419	114067420	+	0	NA	Intergenic	AluY|SINE|Alu	-111108	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr5.16933161.-	chr5	16933161	16933162	-	0	NA	"intron (NM_012334, intron 1 of 40)"	AluJb|SINE|Alu	-3224	NM_012334	4651	Hs.481720	NM_012334		MYO10	-	myosin X	protein-coding
chr13.46489346.+	chr13	46489346	46489347	+	0	NA	Intergenic	MER52D|LTR|ERV1	-63500	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr19.3220529.-	chr19	3220529	3220530	-	0	NA	Intergenic	AluSz|SINE|Alu	4172	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr19.4612796.+	chr19	4612796	4612797	+	0	NA	Intergenic	AluY|SINE|Alu	-26731	NM_152362	126282	Hs.465643	NM_001167942	ENSG00000185361	TNFAIP8L1	TIPE1	"tumor necrosis factor, alpha-induced protein 8-like 1"	protein-coding
chr4.4041381.-	chr4	4041381	4041382	-	0	NA	Intergenic	AluYb9|SINE|Alu	84233	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr1.17426986.+	chr1	17426986	17426987	+	0	NA	"intron (NM_007365, intron 3 of 15)"	AluSx1|SINE|Alu	18962	NM_007365	11240	Hs.33455	NM_007365	ENSG00000117115	PADI2	PAD-H19|PAD2|PDI2	"peptidyl arginine deiminase, type II"	protein-coding
chr14.105158925.-	chr14	105158925	105158926	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2982	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr14.102109459.+	chr14	102109459	102109460	+	0	NA	Intergenic	AluY|SINE|Alu	81771	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr7.5257576.+	chr7	5257576	5257577	+	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	3676	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr19.1661591.+	chr19	1661591	1661592	+	0	NA	Intergenic	AluY|SINE|Alu	-9263	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr6.88118013.+	chr6	88118013	88118014	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	323	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr10.134648569.+	chr10	134648569	134648570	+	0	NA	"intron (NM_001200049, intron 47 of 57)"	"intron (NM_001200049, intron 47 of 57)"	-49032	NM_177400	84504	Hs.134013	NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
chr8.130838450.+	chr8	130838450	130838451	+	0	NA	Intergenic	Intergenic	-39316	NM_031415	56169	Hs.133244	NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
chrX.69654778.+	chrX	69654778	69654779	+	0	NA	Intergenic	Intergenic	-9927	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr22.18839314.+	chr22	18839314	18839315	+	0	NA	Intergenic	Intergenic	-54422	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr17.744647.+	chr17	744647	744648	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22704	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr22.26886573.+	chr22	26886573	26886574	+	0	NA	"intron (NM_001013694, intron 5 of 6)"	AluSz|SINE|Alu	6723	NM_001013694	402055	Hs.709914	NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
chr15.24084662.-	chr15	24084662	24084663	-	0	NA	Intergenic	AluY|SINE|Alu	152212	NM_002487	4692	Hs.50130	NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	"necdin, melanoma antigen (MAGE) family member"	protein-coding
chr12.86658499.-	chr12	86658499	86658500	-	0	NA	"intron (NM_013244, intron 3 of 6)"	MER52A|LTR|ERV1	-288230	NR_039710	100616215		NR_039710	ENSG00000264402	MIR548AL	-	microRNA 548al	miscRNA
chrX.54371333.+	chrX	54371333	54371334	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13105	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr1.114299521.+	chr1	114299521	114299522	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2256	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr5.178657984.-	chr5	178657984	178657985	-	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	-114447	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr2.3204984.-	chr2	3204984	3204985	-	0	NA	"intron (NM_003310, intron 5 of 8)"	"intron (NM_003310, intron 5 of 8)"	-176669	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr1.41916697.-	chr1	41916697	41916698	-	0	NA	Intergenic	Intergenic	-33647	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr4.183981839.-	chr4	183981839	183981840	-	0	NA	Intergenic	AluJb|SINE|Alu	-23021	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	"family with sequence similarity 92, member A3"	pseudo
chr6.163752490.-	chr6	163752490	163752491	-	0	NA	Intergenic	Intergenic	6985	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr1.3022467.+	chr1	3022467	3022468	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22072	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr21.39288801.+	chr21	39288801	39288802	+	0	NA	promoter-TSS (NM_002240)	promoter-TSS (NM_002240)	-60	NM_002240	3763	Hs.741904	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	"potassium inwardly-rectifying channel, subfamily J, member 6"	protein-coding
chr17.18179008.-	chr17	18179008	18179009	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14584	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr13.112547821.+	chr13	112547821	112547822	+	0	NA	Intergenic	CpG	-174092	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr16.3755357.+	chr16	3755357	3755358	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12241	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr6.126100195.+	chr6	126100195	126100196	+	0	NA	Intergenic	AluY|SINE|Alu	-2112	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr7.140400221.+	chr7	140400221	140400222	+	0	NA	"intron (NM_004546, intron 1 of 3)"	AluSp|SINE|Alu	-3344	NR_024454	100134713	Hs.743663	NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	miscRNA
chrX.18849765.-	chrX	18849765	18849766	-	0	NA	Intergenic	AluY|SINE|Alu	58649	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr11.95853282.+	chr11	95853282	95853283	+	0	NA	"intron (NM_032427, intron 1 of 4)"	AluY|SINE|Alu	-195911	NM_016156	8898	Hs.181326	NM_001243571	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
chr17.46186995.-	chr17	46186995	46186996	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2048	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr11.64929023.-	chr11	64929023	64929024	-	0	NA	Intergenic	AluSc5|SINE|Alu	8684	NM_001008778	387778	Hs.450642	NM_001008778	ENSG00000204710	SPDYC	RINGOC|Ringo2	speedy homolog C (Xenopus laevis)	protein-coding
chr16.55125748.-	chr16	55125748	55125749	-	0	NA	Intergenic	Intergenic	-160637	NM_001252197	10265	Hs.435730	NM_001252197	ENSG00000176842	IRX5	HMMS|IRX-2a|IRXB2	iroquois homeobox 5	protein-coding
chr21.45959243.+	chr21	45959243	45959244	+	0	NA	"exon (NM_198691, exon 1 of 1)"	"exon (NM_198691, exon 1 of 1)"	835	NM_198691	386677	Hs.688631	NM_198691	ENSG00000215455	KRTAP10-1	KAP10.1|KAP18-1|KAP18.1|KRTAP10.1|KRTAP18-1|KRTAP18.1	keratin associated protein 10-1	protein-coding
chr16.1845116.+	chr16	1845116	1845117	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-207	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr3.82554727.+	chr3	82554727	82554728	+	0	NA	Intergenic	MER52A|LTR|ERV1	-743777	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr9.133788052.+	chr9	133788052	133788053	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18827	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr14.51521290.+	chr14	51521290	51521291	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluJb|SINE|Alu	41132	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr9.132404399.-	chr9	132404399	132404400	-	0	NA	promoter-TSS (NM_177999)	promoter-TSS (NM_177999)	-49	NM_177999	140459	Hs.125037	NM_001202403		ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
chr9.86597315.-	chr9	86597315	86597316	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1678	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr6.150410247.-	chr6	150410247	150410248	-	0	NA	Intergenic	Intergenic	20045	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chrX.39680346.-	chrX	39680346	39680347	-	0	NA	Intergenic	CpG	-276373	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr20.62479318.+	chr20	62479318	62479319	+	0	NA	Intergenic	Intergenic	-13248	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chrY.9930614.+	chrY	9930614	9930615	+	0	NA	Intergenic	CpG	182207	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr5.1038040.-	chr5	1038040	1038041	-	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	-25049	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr1.62231074.-	chr1	62231074	62231075	-	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	-22925	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr2.55647045.+	chr2	55647045	55647046	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	12	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr1.238519123.-	chr1	238519123	238519124	-	0	NA	Intergenic	AluSg|SINE|Alu	-130194	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LOC339535	-	uncharacterized LOC339535	miscRNA
chr5.1770153.-	chr5	1770153	1770154	-	0	NA	Intergenic	L1MB5|LINE|L1	-29803	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr2.31691886.+	chr2	31691886	31691887	+	0	NA	Intergenic	AluY|SINE|Alu	-54275	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr22.49556909.-	chr22	49556909	49556910	-	0	NA	Intergenic	Intergenic	-294327	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr9.126691727.+	chr9	126691727	126691728	+	0	NA	"intron (NM_024820, intron 1 of 20)"	"intron (NM_024820, intron 1 of 20)"	690	NM_020946	57706	Hs.568340	NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608|RP11-230L22.3	DENN/MADD domain containing 1A	protein-coding
chr9.83480.-	chr9	83480	83481	-	0	NA	Intergenic	SVA_E|Other|Other	-34937	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr18.77627548.+	chr18	77627548	77627549	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3880	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr19.49964881.+	chr19	49964881	49964882	+	0	NA	"exon (NM_153329, exon 6 of 17)"	"exon (NM_153329, exon 6 of 17)"	8408	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr4.38809152.-	chr4	38809152	38809153	-	0	NA	Intergenic	SVA_D|Other|Other	2740	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr17.4708694.+	chr17	4708694	4708695	+	0	NA	Intergenic	AluSp|SINE|Alu	-1702	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chrX.153657112.-	chrX	153657112	153657113	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-134	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr11.67351052.-	chr11	67351052	67351053	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	14	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr15.63229240.-	chr15	63229240	63229241	-	0	NA	Intergenic	AluSp|SINE|Alu	105598	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr13.19683543.+	chr13	19683543	19683544	+	0	NA	Intergenic	L1PA2|LINE|L1	-33579	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr7.152109407.-	chr7	152109407	152109408	-	0	NA	"intron (NM_170606, intron 1 of 58)"	AluSx1|SINE|Alu	-23683	NM_170606	58508	Hs.647120	NM_170606	ENSG00000055609	MLL3	HALR|KMT2C	myeloid/lymphoid or mixed-lineage leukemia 3	protein-coding
chr5.180198337.+	chr5	180198337	180198338	+	0	NA	Intergenic	SVA_D|Other|Other	-31279	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr13.23713114.-	chr13	23713114	23713115	-	0	NA	Intergenic	AluY|SINE|Alu	41946	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr4.1358099.-	chr4	1358099	1358100	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16995	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr3.74440920.+	chr3	74440920	74440921	+	0	NA	"intron (NM_020872, intron 4 of 21)"	AluSx3|SINE|Alu	129423	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
chr7.4028193.+	chr7	4028193	4028194	+	0	NA	"intron (NM_152744, intron 14 of 44)"	"intron (NM_152744, intron 14 of 44)"	-141124	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chrX.103014798.-	chrX	103014798	103014799	-	0	NA	Intergenic	AluY|SINE|Alu	16641	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr1.110881133.+	chr1	110881133	110881134	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	660	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr1.246995902.-	chr1	246995902	246995903	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42983	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chrM.799.+	chrM	799	800	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.126700684.-	chr2	126700684	126700685	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712827	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr4.17513821.+	chr4	17513821	17513822	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	36	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr5.7850335.+	chr5	7850335	7850336	+	0	NA	"intron (NM_001089584, intron 1 of 2)"	CpG	1268	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
chr9.141111339.-	chr9	141111339	141111340	-	0	NA	"intron (NM_001145249, intron 3 of 6)"	AluSc8|SINE|Alu	-4702	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	"family with sequence similarity 157, member B"	protein-coding
chr5.2007699.-	chr5	2007699	2007700	-	0	NA	Intergenic	CpG	124819	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr17.77198171.+	chr17	77198171	77198172	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	127152	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr19.5048253.+	chr19	5048253	5048254	+	0	NA	"intron (NM_015015, intron 6 of 22)"	"intron (NM_015015, intron 6 of 22)"	79129	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr17.77746693.+	chr17	77746693	77746694	+	0	NA	Intergenic	Intergenic	-5284	NM_005189	84733	Hs.368410	NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox homolog 2	protein-coding
chr1.178011432.-	chr1	178011432	178011433	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	4290	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr4.68566910.-	chr4	68566910	68566911	-	0	NA	promoter-TSS (NR_015439)	promoter-TSS (NR_015439)	21	NM_018227	55236	Hs.212774	NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin-like modifier activating enzyme 6	protein-coding
chr2.115328226.+	chr2	115328226	115328227	+	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	109046	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr3.196325410.+	chr3	196325410	196325411	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29685	NM_001105573	200933	Hs.169815	NM_001105573	ENSG00000174013	FBXO45	Fbx45	F-box protein 45	protein-coding
chr16.12210425.-	chr16	12210425	12210426	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139823	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr12.132116779.-	chr12	132116779	132116780	-	0	NA	Intergenic	L1ME1|LINE|L1	78853	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr19.22949499.-	chr19	22949499	22949500	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	-17474	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr4.152027777.+	chr4	152027777	152027778	+	0	NA	Intergenic	AluSx3|SINE|Alu	2798	NR_000007	8944		NR_000007		SNORD73A	RNU73|RNU73A|U73|U73a	"small nucleolar RNA, C/D box 73A"	snoRNA
chr9.76966055.-	chr9	76966055	76966056	-	0	NA	Intergenic	AluSp|SINE|Alu	146197	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr3.22843184.-	chr3	22843184	22843185	-	0	NA	Intergenic	L1PA2|LINE|L1	401600	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr7.532207.-	chr7	532207	532208	-	0	NA	Intergenic	Intergenic	-27274	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr3.119813188.-	chr3	119813188	119813189	-	0	NA	promoter-TSS (NM_001146156)	promoter-TSS (NM_001146156)	-76	NM_001146156	2932	Hs.445733	NM_001146156	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
chr7.158268183.-	chr7	158268183	158268184	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57322	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr7.25609218.-	chr7	25609218	25609219	-	0	NA	Intergenic	AluSz|SINE|Alu	-271412	NR_046486	100873753		NR_046486		RNU6-16	-	"RNA, U6 small nuclear 16"	snRNA
chr6.150275520.+	chr6	150275520	150275521	+	0	NA	Intergenic	CpG	-9623	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr11.111898156.-	chr11	111898156	111898157	-	0	NA	"intron (NM_001931, intron 2 of 13)"	SVA_D|Other|Other	-2618	NM_001931	1737	Hs.335551	NM_001931	ENSG00000150768	DLAT	DLTA|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
chr1.90150866.+	chr1	90150866	90150867	+	0	NA	"intron (NM_032270, intron 1 of 2)"	AluYb8|SINE|Alu	52222	NM_032270	84230	Hs.412836	NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	"leucine rich repeat containing 8 family, member C"	protein-coding
chr6.168219504.-	chr6	168219504	168219505	-	0	NA	Intergenic	AluSp|SINE|Alu	-7972	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr20.62194060.-	chr20	62194060	62194061	-	0	NA	"exon (NM_001037335, exon 9 of 20)"	"exon (NM_001037335, exon 9 of 20)"	-5047	NM_033405	85441	Hs.517180	NM_001037335	ENSG00000130589	HELZ2	PDIP-1|PRIC285	"helicase with zinc finger 2, transcriptional coactivator"	protein-coding
chr19.18416228.+	chr19	18416228	18416229	+	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	17773	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr19.10570993.-	chr19	10570993	10570994	-	0	NA	"intron (NM_006202, intron 5 of 9)"	AluSx|SINE|Alu	-7360	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr11.342922.-	chr11	342922	342923	-	0	NA	Intergenic	AluSz|SINE|Alu	22008	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr13.47509457.+	chr13	47509457	47509458	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-38246	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr7.95178741.+	chr7	95178741	95178742	+	0	NA	Intergenic	AluY|SINE|Alu	47184	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr9.131293136.+	chr9	131293136	131293137	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21701	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr21.35774115.-	chr21	35774115	35774116	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26366	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr19.58963033.-	chr19	58963033	58963034	-	0	NA	promoter-TSS (NM_207395)	promoter-TSS (NM_207395)	-62	NM_207395	388569	Hs.186970	NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
chr7.2933098.-	chr7	2933098	2933099	-	0	NA	Intergenic	AluSx1|SINE|Alu	49139	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr1.32679296.-	chr1	32679296	32679297	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4601	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr22.31744360.-	chr22	31744360	31744361	-	0	NA	Intergenic	AluSp|SINE|Alu	2111	NM_014323	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr16.965931.+	chr16	965931	965932	+	0	NA	"intron (NM_022773, intron 2 of 10)"	"intron (NM_022773, intron 2 of 10)"	55053	NR_033646	64788	Hs.732776	NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
chr7.4516788.-	chr7	4516788	4516789	-	0	NA	Intergenic	AluSx1|SINE|Alu	205142	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr19.5680533.+	chr19	5680533	5680534	+	0	NA	promoter-TSS (NM_001267868)	promoter-TSS (NM_001267868)	-243	NM_198533	374875	Hs.739286	NM_001267868	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid (11-beta) dehydrogenase 1-like	protein-coding
chr4.49160672.+	chr4	49160672	49160673	+	0	NA	Intergenic	AluY|SINE|Alu	172407	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr19.2456912.-	chr19	2456912	2456913	-	0	NA	promoter-TSS (NM_032737)	promoter-TSS (NM_032737)	-54	NM_032737	84823	Hs.744015	NM_032737	ENSG00000176619	LMNB2	LAMB2|LMN2	lamin B2	protein-coding
chr5.1038032.-	chr5	1038032	1038033	-	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	-25057	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr2.215386888.-	chr2	215386888	215386889	-	0	NA	"intron (NR_047698, intron 1 of 3)"	AluY|SINE|Alu	-11982	NR_047698	100885780	Hs.665982	NR_047698		VWC2L-IT1	-	VWC2L intronic transcript 1 (non-protein coding)	miscRNA
chr5.5953951.-	chr5	5953951	5953952	-	0	NA	Intergenic	Intergenic	-383454	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr10.80853998.+	chr10	80853998	80853999	+	0	NA	"intron (NM_020338, intron 1 of 24)"	"intron (NM_020338, intron 1 of 24)"	25206	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	"zinc finger, MIZ-type containing 1"	protein-coding
chr11.122809923.-	chr11	122809923	122809924	-	0	NA	"intron (NM_024806, intron 5 of 8)"	AluSc|SINE|Alu	-42456	NM_001098169	390259	Hs.449687	NM_001098169	ENSG00000188909	BSX	BSX1	brain-specific homeobox	protein-coding
chrX.53111690.-	chrX	53111690	53111691	-	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	-148	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.68439014.-	chr5	68439014	68439015	-	0	NA	Intergenic	AluY|SINE|Alu	23823	NM_031966	891	Hs.23960	NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
chr12.27144195.+	chr12	27144195	27144196	+	0	NA	"intron (NM_016551, intron 5 of 11)"	AluYb9|SINE|Alu	23144	NM_016551	51768	Hs.438641	NM_016551		TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
chr1.3022477.+	chr1	3022477	3022478	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22062	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr9.135946997.+	chr9	135946997	135946998	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9632	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr19.49186320.+	chr19	49186320	49186321	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10056	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr12.129892210.-	chr12	129892210	129892211	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496002	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr1.215227204.-	chr1	215227204	215227205	-	0	NA	"intron (NM_001017424, intron 1 of 6)"	AluSz6|SINE|Alu	29356	NM_001017425	3776	Hs.497745	NM_001017424	ENSG00000082482	KCNK2	K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e	"potassium channel, subfamily K, member 2"	protein-coding
chr8.141559327.-	chr8	141559327	141559328	-	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	-37246	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr7.532166.-	chr7	532166	532167	-	0	NA	Intergenic	Intergenic	-27315	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr16.443670.+	chr16	443670	443671	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3522	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chrX.12751728.+	chrX	12751728	12751729	+	0	NA	Intergenic	AluY|SINE|Alu	-57746	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr7.155246448.-	chr7	155246448	155246449	-	0	NA	Intergenic	CpG	4376	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr7.496071.-	chr7	496071	496072	-	0	NA	Intergenic	Intergenic	-63410	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr16.33293897.+	chr16	33293897	33293898	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4805	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr5.29531132.-	chr5	29531132	29531133	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604155	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr12.123903575.-	chr12	123903575	123903576	-	0	NA	"intron (NM_145058, intron 3 of 3)"	AluY|SINE|Alu	-17689	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr14.101892593.-	chr14	101892593	101892594	-	0	NA	Intergenic	AluY|SINE|Alu	-129420	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr14.106359707.-	chr14	106359707	106359708	-	0	NA	Intergenic	Intergenic	24131	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr19.47497522.+	chr19	47497522	47497523	+	0	NA	"intron (NM_004491, intron 4 of 5)"	"intron (NM_004491, intron 4 of 5)"	-26621	NM_002517	4861	Hs.79564	NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
chr2.237068279.-	chr2	237068279	237068280	-	0	NA	Intergenic	CpG	-8373	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chrX.81762799.+	chrX	81762799	81762800	+	0	NA	Intergenic	AluY|SINE|Alu	-1000470	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr3.20353497.-	chr3	20353497	20353498	-	0	NA	Intergenic	AluYk4|SINE|Alu	125773	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr10.324413.-	chr10	324413	324414	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98479	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr20.31331213.+	chr20	31331213	31331214	+	0	NA	"5' UTR (NM_053041, exon 1 of 9)"	"5' UTR (NM_053041, exon 1 of 9)"	601	NM_001099339	149951	Hs.408427	NM_001099339	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
chr14.19890095.-	chr14	19890095	19890096	-	0	NA	Intergenic	CpG	4274	NR_073460	101101776	Hs.617315	NR_073460		LOC101101776	-	ribosome biogenesis protein BMS1 homolog pseudogene	pseudo
chr10.120946051.+	chr10	120946051	120946052	+	0	NA	Intergenic	AluJb|SINE|Alu	-7706	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr16.3203714.+	chr16	3203714	3203715	+	0	NA	Intergenic	AluSg|SINE|Alu	18580	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr22.25033165.+	chr22	25033165	25033166	+	0	NA	"intron (NR_024494, intron 1 of 6)"	AluSp|SINE|Alu	4283	NR_024494	644165	Hs.730665	NR_024494		BCRP3	BCR3|BCRL3|BCRL6	breakpoint cluster region pseudogene 3	pseudo
chr1.51444007.-	chr1	51444007	51444008	-	0	NA	Intergenic	CpG	-8365	NM_078626	1031	Hs.525324	NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	"cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)"	protein-coding
chr11.115643193.-	chr11	115643193	115643194	-	0	NA	Intergenic	AluSx|SINE|Alu	12275	NR_034148	283143	Hs.130499	NR_034148		LOC283143	-	uncharacterized LOC283143	miscRNA
chr22.19899230.-	chr22	19899230	19899231	-	0	NA	"intron (NM_006440, intron 7 of 17)"	"intron (NM_006440, intron 7 of 17)"	30033	NM_000754	1312	Hs.713616	NM_000754	ENSG00000093010	COMT	-	catechol-O-methyltransferase	protein-coding
chr8.125234429.-	chr8	125234429	125234430	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150511	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr4.5975496.-	chr4	5975496	5975497	-	0	NA	Intergenic	Intergenic	50441	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	-	microRNA 378d-1	miscRNA
chrX.54269607.-	chrX	54269607	54269608	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59893	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr1.937267.-	chr1	937267	937268	-	0	NA	Intergenic	CpG-24	1715	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr3.14349495.+	chr3	14349495	14349496	+	0	NA	Intergenic	Intergenic	-94611	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr15.73977322.+	chr15	73977322	73977323	+	0	NA	"intron (NM_025240, intron 1 of 7)"	CpG	700	NM_001024736	80381	Hs.77873	NM_001024736	ENSG00000103855	CD276	4Ig-B7-H3|B7-H3|B7H3|B7RP-2	CD276 molecule	protein-coding
chr8.27695124.-	chr8	27695124	27695125	-	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	-225	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr6.34857454.+	chr6	34857454	34857455	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	416	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr5.33420109.-	chr5	33420109	33420110	-	0	NA	Intergenic	AluY|SINE|Alu	20693	NM_001258437	6897	Hs.481860	NM_001258437	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
chr10.82214025.+	chr10	82214025	82214026	+	0	NA	promoter-TSS (NM_030927)	promoter-TSS (NM_030927)	-13	NM_030927	81619	Hs.718943	NM_001128309	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
chr9.129229392.-	chr9	129229392	129229393	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56609	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr19.58125586.-	chr19	58125586	58125587	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	244	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr19.40508899.-	chr19	40508899	40508900	-	0	NA	"intron (NM_178544, intron 3 of 6)"	AluSx1|SINE|Alu	-5956	NM_178544	339327	Hs.666807	NM_178544	ENSG00000187187	ZNF546	ZNF49	zinc finger protein 546	protein-coding
chr3.122695614.-	chr3	122695614	122695615	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	633	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr9.6858662.+	chr9	6858662	6858663	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101021	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr19.34394458.+	chr19	34394458	34394459	+	0	NA	Intergenic	AluSx1|SINE|Alu	106707	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr16.632104.-	chr16	632104	632105	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7253	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr18.37828469.+	chr18	37828469	37828470	+	0	NA	Intergenic	AluY|SINE|Alu	-496510	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	LINC00669	-	long intergenic non-protein coding RNA 669	miscRNA
chr7.100044658.+	chr7	100044658	100044659	+	0	NA	Intergenic	AluY|SINE|Alu	-10564	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr17.78397731.-	chr17	78397731	78397732	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4513	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr2.240371795.+	chr2	240371795	240371796	+	0	NA	Intergenic	SVA_D|Other|Other	-49152	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.38829851.+	chr9	38829851	38829852	+	0	NA	Intergenic	AluY|SINE|Alu	208766	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chrX.40029606.-	chrX	40029606	40029607	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6976	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr10.7626551.+	chr10	7626551	7626552	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35085	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr2.43997074.-	chr2	43997074	43997075	-	0	NA	Intergenic	AluY|SINE|Alu	4104	NM_016008	51626	Hs.371597	NM_001012665	ENSG00000138036	DYNC2LI1	D2LIC|LIC3	"dynein, cytoplasmic 2, light intermediate chain 1"	protein-coding
chr3.20070745.-	chr3	20070745	20070746	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10779	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr13.50177032.-	chr13	50177032	50177033	-	0	NA	Intergenic	AluY|SINE|Alu	17313	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr17.79914713.+	chr17	79914713	79914714	+	0	NA	"intron (NM_178493, intron 7 of 10)"	CpG-11381	4344	NM_178493	147111	Hs.106137	NM_178493	ENSG00000185269	NOTUM	-	notum pectinacetylesterase homolog (Drosophila)	protein-coding
chr8.143373444.+	chr8	143373444	143373445	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93727	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr3.123167218.-	chr3	123167218	123167219	-	0	NA	"exon (NM_183357, exon 1 of 21)"	"exon (NM_183357, exon 1 of 21)"	-174	NM_183357	111	Hs.593292	NM_001199642	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
chrX.129230995.+	chrX	129230995	129230996	+	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	13480	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr14.34924191.-	chr14	34924191	34924192	-	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	-7277	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr9.136809812.+	chr9	136809812	136809813	+	0	NA	"intron (NM_001134398, intron 1 of 29)"	"intron (NM_001134398, intron 1 of 29)"	47634	NM_003371	7410	Hs.689325	NM_001134398	ENSG00000160293	VAV2	VAV-2	vav 2 guanine nucleotide exchange factor	protein-coding
chr3.164119686.+	chr3	164119686	164119687	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676597	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr12.132372600.+	chr12	132372600	132372601	+	0	NA	Intergenic	AluSx|SINE|Alu	-6679	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr7.155159290.-	chr7	155159290	155159291	-	0	NA	Intergenic	SVA_E|Other|Other	-69804	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr13.88664951.-	chr13	88664951	88664952	-	0	NA	Intergenic	AluSx1|SINE|Alu	-340081	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr8.123097806.-	chr8	123097806	123097807	-	0	NA	Intergenic	AluSp|SINE|Alu	444176	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
chr18.74140167.+	chr18	74140167	74140168	+	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	66979	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr7.155834319.-	chr7	155834319	155834320	-	0	NA	Intergenic	Intergenic	229352	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr11.47459673.+	chr11	47459673	47459674	+	0	NA	"intron (NM_032645, intron 5 of 5)"	"intron (NM_032645, intron 5 of 5)"	11057	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
chr18.11959821.+	chr18	11959821	11959822	+	0	NA	Intergenic	SVA_D|Other|Other	-21606	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr2.43254040.+	chr2	43254040	43254041	+	0	NA	Intergenic	Intergenic	199705	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr16.81174928.+	chr16	81174928	81174929	+	0	NA	"exon (NM_052892, exon 31 of 43)"	"exon (NM_052892, exon 31 of 43)"	-44948	NM_004483	2653	Hs.546256	NM_004483	ENSG00000140905	GCSH	GCE|NKH	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
chr1.16826567.-	chr1	16826567	16826568	-	0	NA	Intergenic	AluSx|SINE|Alu	7371	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	"ciliary rootlet coiled-coil, rootletin pseudogene 3"	pseudo
chr9.14963537.-	chr9	14963537	14963538	-	0	NA	Intergenic	LTR12_|LTR|ERV1	29788	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
chr6.170055434.-	chr6	170055434	170055435	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46725	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr2.170590586.-	chr2	170590586	170590587	-	0	NA	"5' UTR (NM_144711, exon 1 of 4)"	"5' UTR (NM_144711, exon 1 of 4)"	-230	NM_144711	151230	Hs.733554	NM_144711	ENSG00000213160	KLHL23	DITHP	kelch-like family member 23	protein-coding
chr1.149293777.-	chr1	149293777	149293778	-	0	NA	Intergenic	AluSz|SINE|Alu	-14301	NR_027002	388692	Hs.728022	NR_027002		LOC388692	-	uncharacterized LOC388692	miscRNA
chr7.5244763.+	chr7	5244763	5244764	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	-9137	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr12.101954444.+	chr12	101954444	101954445	+	0	NA	Intergenic	AluSx|SINE|Alu	-34265	NM_001254721	4604	Hs.654589	NM_001254718	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	"myosin binding protein C, slow type"	protein-coding
chr5.86907792.+	chr5	86907792	86907793	+	0	NA	Intergenic	AluY|SINE|Alu	-198942	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr14.77965502.-	chr14	77965502	77965503	-	0	NA	promoter-TSS (NM_199296)	promoter-TSS (NM_199296)	292	NM_182509	145501	Hs.29742	NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2 homolog (zebrafish)	protein-coding
chr8.143373430.-	chr8	143373430	143373431	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93713	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr1.8021843.-	chr1	8021843	8021844	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-129	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr20.20772533.-	chr20	20772533	20772534	-	0	NA	Intergenic	LTR16A2|LTR|ERVL	79267	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr11.69189574.+	chr11	69189574	69189575	+	0	NA	Intergenic	Intergenic	127952	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr7.91257042.+	chr7	91257042	91257043	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252974	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr3.50701720.-	chr3	50701720	50701721	-	0	NA	Intergenic	AluY|SINE|Alu	10791	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr4.814991.+	chr4	814991	814992	+	0	NA	"intron (NM_006651, intron 2 of 3)"	"intron (NM_006651, intron 2 of 3)"	4954	NM_006651	10815	Hs.478930	NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1	complexin 1	protein-coding
chr15.34527891.-	chr15	34527891	34527892	-	0	NA	"intron (NM_133647, intron 23 of 24)"	AluSq2|SINE|Alu	-10646	NM_016454	51234	Hs.250905	NM_016454	ENSG00000128463	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
chr5.18111523.-	chr5	18111523	18111524	-	0	NA	Intergenic	AluY|SINE|Alu	724104	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr2.240402013.+	chr2	240402013	240402014	+	0	NA	Intergenic	Intergenic	-79370	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr16.84454704.+	chr16	84454704	84454705	+	0	NA	"intron (NM_014861, intron 7 of 26)"	AluSx1|SINE|Alu	52571	NM_014861	9914	Hs.6168	NM_014861	ENSG00000064270	ATP2C2	SPCA2	"ATPase, Ca++ transporting, type 2C, member 2"	protein-coding
chr8.142440415.-	chr8	142440415	142440416	-	0	NA	"intron (NM_032611, intron 4 of 4)"	CpG	-8408	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr11.45810285.+	chr11	45810285	45810286	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15338	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chrX.70493591.-	chrX	70493591	70493592	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9451	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr1.24513606.-	chr1	24513606	24513607	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-159	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chrX.115004828.-	chrX	115004828	115004829	-	0	NA	Intergenic	CpG	-177009	NM_001172335	5358	Hs.496622	NM_001136025	ENSG00000102024	PLS3	T-plastin	plastin 3	protein-coding
chr17.61926306.-	chr17	61926306	61926307	-	0	NA	Intergenic	CpG	5955	NM_001098426	6603	Hs.250581	NM_001098426	ENSG00000108604	SMARCD2	BAF60B|CRACD2|Rsc6p	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2"	protein-coding
chr17.21215333.+	chr17	21215333	21215334	+	0	NA	"intron (NM_145109, intron 9 of 11)"	"intron (NM_145109, intron 9 of 11)"	23985	NM_002756	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
chrX.48381174.+	chrX	48381174	48381175	+	0	NA	"intron (NM_006579, intron 1 of 4)"	AluSz6|SINE|Alu	1010	NM_006579	10682	Hs.30619	NM_006579		EBP	CDPX2|CHO2|CPX|CPXD	emopamil binding protein (sterol isomerase)	protein-coding
chr8.56758304.-	chr8	56758304	56758305	-	0	NA	Intergenic	AluSx3|SINE|Alu	34082	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr13.20343663.+	chr13	20343663	20343664	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13496	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr12.26964544.+	chr12	26964544	26964545	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21587	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr8.30590110.+	chr8	30590110	30590111	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4624	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr3.88595870.-	chr3	88595870	88595871	-	0	NA	Intergenic	AluSc8|SINE|Alu	396854	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr3.126795142.-	chr3	126795142	126795143	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-87705	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
chr2.170684198.-	chr2	170684198	170684199	-	0	NA	"exon (NM_172070, exon 1 of 39)"	"exon (NM_172070, exon 1 of 39)"	-180	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr13.96681135.+	chr13	96681135	96681136	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24601	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr19.4338850.+	chr19	4338850	4338851	+	0	NA	promoter-TSS (NM_017720)	promoter-TSS (NM_017720)	-3	NM_017720	55620	Hs.194385	NM_001013841	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
chr16.66730303.-	chr16	66730303	66730304	-	0	NA	"exon (NM_178818, exon 1 of 5)"	"exon (NM_178818, exon 1 of 5)"	-307	NM_181521	146223	Hs.643961	NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF-like MARVEL transmembrane domain containing 4	protein-coding
chr15.29130786.+	chr15	29130786	29130787	+	0	NA	Intergenic	CpG	-36965	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr6.25384361.-	chr6	25384361	25384362	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104705	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr20.33062697.-	chr20	33062697	33062698	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8567	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr3.164852004.-	chr3	164852004	164852005	-	0	NA	Intergenic	AluY|SINE|Alu	55721	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr2.27588386.+	chr2	27588386	27588387	+	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	4533	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr13.112726554.+	chr13	112726554	112726555	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4641	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr8.43274643.-	chr8	43274643	43274644	-	0	NA	Intergenic	SVA_D|Other|Other	-127058	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr17.30863340.+	chr17	30863340	30863341	+	0	NA	"intron (NM_015194, intron 21 of 21)"	AluSz|SINE|Alu	49235	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	"cyclin-dependent kinase 5, regulatory subunit 1 (p35)"	protein-coding
chr4.40571755.+	chr4	40571755	40571756	+	0	NA	"intron (NM_001098634, intron 1 of 6)"	AluSz|SINE|Alu	-53765	NM_019027	54502	Hs.518727	NM_001098634	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
chr6.168395121.-	chr6	168395121	168395122	-	0	NA	Intergenic	AluSx|SINE|Alu	17502	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr20.39978553.+	chr20	39978553	39978554	+	0	NA	"intron (NM_022896, intron 6 of 19)"	"intron (NM_022896, intron 6 of 19)"	8993	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr19.56578190.-	chr19	56578190	56578191	-	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-54459	NM_001002836	126208	Hs.397153	NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
chr4.39561569.+	chr4	39561569	39561570	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32110	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr22.41715383.+	chr22	41715383	41715384	+	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	17876	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr8.141276721.+	chr8	141276721	141276722	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191140	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr6.109611742.+	chr6	109611742	109611743	+	0	NA	Intergenic	CpG	-3764	NR_028595	221262	Hs.723571	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	"coiled-coil domain containing 162, pseudogene"	pseudo
chr20.37093383.-	chr20	37093383	37093384	-	0	NA	Intergenic	AluSx3|SINE|Alu	8103	NM_020336	57148	Hs.598850	NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta|dJ1100H13.1	"Ral GTPase activating protein, beta subunit (non-catalytic)"	protein-coding
chr14.65639690.-	chr14	65639690	65639691	-	0	NA	Intergenic	AluY|SINE|Alu	70277	NR_073137	4149	Hs.285354	NM_001271068	ENSG00000125952	MAX	bHLHd4	MYC associated factor X	protein-coding
chr17.73615791.+	chr17	73615791	73615792	+	0	NA	"non-coding (NR_003587, exon 44 of 61)"	"non-coding (NR_003587, exon 44 of 61)"	-13723	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr10.104255197.-	chr10	104255197	104255198	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7315	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr17.61686675.-	chr17	61686675	61686676	-	0	NA	TTS (NM_016360)	TTS (NM_016360)	-8444	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
chrM.6477.-	chrM	6477	6478	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.101214347.-	chr2	101214347	101214348	-	0	NA	Intergenic	AluY|SINE|Alu	-34929	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr3.93689378.+	chr3	93689378	93689379	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3556	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr3.41241063.+	chr3	41241063	41241064	+	0	NA	"5' UTR (NM_001904, exon 1 of 15)"	"5' UTR (NM_001904, exon 1 of 15)"	121	NM_001098209	1499	Hs.476018	NM_001098209	ENSG00000168036	CTNNB1	CTNNB|MRD19|armadillo	"catenin (cadherin-associated protein), beta 1, 88kDa"	protein-coding
chr6.126111902.-	chr6	126111902	126111903	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	7	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr16.1228089.+	chr16	1228089	1228090	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24848	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr18.47285206.+	chr18	47285206	47285207	+	0	NA	Intergenic	AluY|SINE|Alu	55045	NM_006111	10449	Hs.200136	NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
chr1.97799171.+	chr1	97799171	97799172	+	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	237692	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr2.242738375.+	chr2	242738375	242738376	+	0	NA	"intron (NM_022134, intron 1 of 3)"	"intron (NM_022134, intron 1 of 3)"	-11785	NM_001167600	129807	Hs.551747	NM_001167599	ENSG00000204099	NEU4	-	sialidase 4	protein-coding
chrX.147774566.+	chrX	147774566	147774567	+	0	NA	"intron (NM_002025, intron 3 of 20)"	AluY|SINE|Alu	-26049	NM_001170628	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr14.105158919.-	chr14	105158919	105158920	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2976	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr5.9328751.-	chr5	9328751	9328752	-	0	NA	"intron (NM_003966, intron 4 of 22)"	AluSq|SINE|Alu	-217482	NM_003966	9037	Hs.27621	NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A"	protein-coding
chr14.100070056.+	chr14	100070056	100070057	+	0	NA	"exon (NM_001144995, exon 1 of 6)"	"exon (NM_001144995, exon 1 of 6)"	671	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
chr19.42490045.-	chr19	42490045	42490046	-	0	NA	"exon (NM_001256213, exon 6 of 23)"	"exon (NM_001256213, exon 6 of 23)"	-7574	NM_001256213	478	Hs.515427	NM_001256213	ENSG00000105409	ATP1A3	AHC2|DYT12|RDP	"ATPase, Na+/K+ transporting, alpha 3 polypeptide"	protein-coding
chr1.156527495.-	chr1	156527495	156527496	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14901	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr15.37172788.+	chr15	37172788	37172789	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5946	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr11.67759444.-	chr11	67759444	67759445	-	0	NA	"intron (NM_030930, intron 10 of 10)"	CpG	-12149	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chr13.112769126.+	chr13	112769126	112769127	+	0	NA	Intergenic	L2a|LINE|L2	47213	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr1.54966399.-	chr1	54966399	54966400	-	0	NA	Intergenic	AluSq|SINE|Alu	47408	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr12.122752755.-	chr12	122752755	122752756	-	0	NA	Intergenic	AluY|SINE|Alu	1687	NM_022916	65082	Hs.592009	NM_022916		VPS33A	-	vacuolar protein sorting 33 homolog A (S. cerevisiae)	protein-coding
chr20.14910667.-	chr20	14910667	14910668	-	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	506	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr12.49163954.+	chr12	49163954	49163955	+	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	1866	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr2.71562047.+	chr2	71562047	71562048	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3162	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr5.19804192.+	chr5	19804192	19804193	+	0	NA	"intron (NM_001167667, intron 3 of 12)"	AluY|SINE|Alu	184161	NM_004934	1016	Hs.317632	NM_001167667	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	"cadherin 18, type 2"	protein-coding
chr11.124736244.+	chr11	124736244	124736245	+	0	NA	"intron (NM_022370, intron 1 of 27)"	CpG	939	NM_022370	64221	Hs.435621	NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPS|RBIG1|RIG1	"roundabout, axon guidance receptor, homolog 3 (Drosophila)"	protein-coding
chr5.166357253.+	chr5	166357253	166357254	+	0	NA	Intergenic	AluSx|SINE|Alu	-354590	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr8.56099028.-	chr8	56099028	56099029	-	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	-84011	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr9.72101691.-	chr9	72101691	72101692	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157450	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr3.122695622.+	chr3	122695622	122695623	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-641	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr2.74734435.-	chr2	74734435	74734436	-	0	NA	"intron (NM_032673, intron 1 of 8)"	CpG	-386	NM_032673	84759	Hs.316750	NM_032673		PCGF1	2010002K04Rik|NSPC1|RNF3A-2|RNF68	polycomb group ring finger 1	protein-coding
chr21.47343974.-	chr21	47343974	47343975	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57689	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr12.100804233.-	chr12	100804233	100804234	-	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	-53376	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr10.70337062.+	chr10	70337062	70337063	+	0	NA	"intron (NM_030625, intron 2 of 11)"	AluSx|SINE|Alu	16945	NM_030625	80312	Hs.708977	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
chr19.15718047.-	chr19	15718047	15718048	-	0	NA	Intergenic	AluY|SINE|Alu	7982	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr17.37314165.+	chr17	37314165	37314166	+	0	NA	"intron (NM_001143968, intron 5 of 5)"	AluY|SINE|Alu	-6263	NM_020405	57125	Hs.125036	NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
chr9.137588847.-	chr9	137588847	137588848	-	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	-55195	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr8.121513312.+	chr8	121513312	121513313	+	0	NA	"intron (NM_022045, intron 14 of 21)"	AluY|SINE|Alu	-55665	NM_014078	28998	Hs.333823	NM_014078	ENSG00000172172	MRPL13	L13|L13A|L13mt|RPL13|RPML13	mitochondrial ribosomal protein L13	protein-coding
chr10.38249304.-	chr10	38249304	38249305	-	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	-16149	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chr1.97029389.-	chr1	97029389	97029390	-	0	NA	Intergenic	AluSp|SINE|Alu	157786	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr3.22843325.+	chr3	22843325	22843326	+	0	NA	Intergenic	L1PA2|LINE|L1	-401459	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr7.100044650.-	chr7	100044650	100044651	-	0	NA	Intergenic	AluY|SINE|Alu	10556	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr13.112547825.+	chr13	112547825	112547826	+	0	NA	Intergenic	CpG	-174088	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr10.120946168.+	chr10	120946168	120946169	+	0	NA	Intergenic	AluY|SINE|Alu	-7823	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr10.102802702.-	chr10	102802702	102802703	-	0	NA	Intergenic	CpG	-11706	NM_030971	81855	Hs.283844	NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3	sideroflexin 3	protein-coding
chr3.164852032.-	chr3	164852032	164852033	-	0	NA	Intergenic	AluY|SINE|Alu	55749	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr9.138959040.+	chr9	138959040	138959041	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28091	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr1.1341938.+	chr1	1341938	1341939	+	0	NA	"intron (NM_017971, intron 2 of 3)"	"intron (NM_017971, intron 2 of 3)"	755	NM_017971	55052	Hs.182698	NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20	mitochondrial ribosomal protein L20	protein-coding
chr19.54515339.-	chr19	54515339	54515340	-	0	NA	"exon (NM_145815, exon 3 of 3)"	"exon (NM_145815, exon 3 of 3)"	-19797	NM_145814	59285	Hs.631560	NM_031897	ENSG00000130433	CACNG6	-	"calcium channel, voltage-dependent, gamma subunit 6"	protein-coding
chr10.21539562.-	chr10	21539562	21539563	-	0	NA	Intergenic	AluSq2|SINE|Alu	-76331	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	miscRNA
chrX.152916352.-	chrX	152916352	152916353	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8455	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr16.632122.-	chr16	632122	632123	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7235	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr19.55823390.-	chr19	55823390	55823391	-	0	NA	TTS (NM_001085488)	TTS (NM_001085488)	-13318	NM_001085488	284417	Hs.382625	NM_001085488	ENSG00000180061	TMEM150B	TMEM224	transmembrane protein 150B	protein-coding
chr7.91257046.-	chr7	91257046	91257047	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252970	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr9.137588872.-	chr9	137588872	137588873	-	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	-55220	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chrX.112187616.-	chrX	112187616	112187617	-	0	NA	Intergenic	AluY|SINE|Alu	103573	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr10.125228156.-	chr10	125228156	125228157	-	0	NA	Intergenic	AluY|SINE|Alu	197715	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr19.17434554.-	chr19	17434554	17434555	-	0	NA	TTS (NM_024050)	TTS (NM_024050)	-11084	NM_020959	57719	Hs.590990	NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
chr17.65335383.-	chr17	65335383	65335384	-	0	NA	Intergenic	AluSx|SINE|Alu	-27338	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr11.83150116.+	chr11	83150116	83150117	+	0	NA	Intergenic	AluSx|SINE|Alu	-152739	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr17.75197693.+	chr17	75197693	75197694	+	0	NA	"intron (NM_001039573, intron 9 of 17)"	AluSg|SINE|Alu	16398	NM_001144001	6397	Hs.464184	NM_001039573	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
chr16.3778319.-	chr16	3778319	3778320	-	0	NA	"exon (NM_004380, exon 31 of 31)"	"exon (NM_004380, exon 31 of 31)"	10721	NM_001272049	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr14.104011604.+	chr14	104011604	104011605	+	0	NA	Intergenic	Intergenic	16095	NM_152307	115708	Hs.525610	NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61 homolog A (S. cerevisiae)	protein-coding
chr4.7044632.+	chr4	7044632	7044633	+	0	NA	promoter-TSS (NM_153376)	promoter-TSS (NM_153376)	96	NM_153376	257236	Hs.656757	NM_153376	ENSG00000173013	CCDC96	-	coiled-coil domain containing 96	protein-coding
chr22.43718245.+	chr22	43718245	43718246	+	0	NA	"intron (NM_173050, intron 2 of 21)"	AluSc8|SINE|Alu	21149	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr17.27717857.+	chr17	27717857	27717858	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-86	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr6.168476050.-	chr6	168476050	168476051	-	0	NA	"intron (NM_024919, intron 1 of 10)"	"intron (NM_024919, intron 1 of 10)"	-482	NM_001122841	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr4.48016927.+	chr4	48016927	48016928	+	0	NA	Intergenic	AluY|SINE|Alu	-1864	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr2.48776681.-	chr2	48776681	48776682	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	-19373	NM_006873	11037	Hs.736128	NM_001198595	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
chr10.120841952.-	chr10	120841952	120841953	-	0	NA	Intergenic	AluSx3|SINE|Alu	1618	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr15.41613498.-	chr15	41613498	41613499	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11321	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr6.1605404.-	chr6	1605404	1605405	-	0	NA	Intergenic	CpG	5277	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr16.375218.+	chr16	375218	375219	+	0	NA	"intron (NM_003502, intron 2 of 10)"	CpG	27458	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr16.70148599.+	chr16	70148599	70148600	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1070	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr5.40801259.+	chr5	40801259	40801260	+	0	NA	Intergenic	SVA_E|Other|Other	-2962	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr3.47744609.-	chr3	47744609	47744610	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78796	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr14.103988601.-	chr14	103988601	103988602	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-595	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr22.47122264.-	chr22	47122264	47122265	-	0	NA	"intron (NM_022766, intron 1 of 12)"	"intron (NM_022766, intron 1 of 12)"	-11888	NM_022766	64781	Hs.200668	NM_182661	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
chr21.36041545.+	chr21	36041545	36041546	+	0	NA	promoter-TSS (NM_053277)	promoter-TSS (NM_053277)	-143	NM_053277	54102	Hs.473695	NM_053277	ENSG00000159212	CLIC6	CLIC1L	chloride intracellular channel 6	protein-coding
chr8.35253998.-	chr8	35253998	35253999	-	0	NA	"intron (NM_080872, intron 1 of 16)"	"intron (NM_080872, intron 1 of 16)"	-161023	NM_080872	137970	Hs.238889	NM_080872	ENSG00000156687	UNC5D	PRO34692|Unc5h4	unc-5 homolog D (C. elegans)	protein-coding
chr22.46326803.-	chr22	46326803	46326804	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46205	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr12.132116777.+	chr12	132116777	132116778	+	0	NA	Intergenic	L1ME1|LINE|L1	-78855	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr4.83364781.-	chr4	83364781	83364782	-	0	NA	"intron (NM_021204, intron 1 of 5)"	AluY|SINE|Alu	-13055	NM_021204	58478	Hs.18442	NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145	enolase-phosphatase 1	protein-coding
chr20.4729571.-	chr20	4729571	4729572	-	0	NA	Intergenic	Intergenic	8257	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr15.44038915.-	chr15	44038915	44038916	-	0	NA	promoter-TSS (NR_002318)	promoter-TSS (NR_002318)	-325	NM_005313	2923	Hs.591095	NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HsT17083|P58|PI-PLC	"protein disulfide isomerase family A, member 3"	protein-coding
chr22.38243156.-	chr22	38243156	38243157	-	0	NA	TTS (NR_030396)	TTS (NR_030396)	-625	NR_030396	724029		NR_030396	ENSG00000207696	MIR659	MIRN659|hsa-mir-659	microRNA 659	miscRNA
chr9.139780633.-	chr9	139780633	139780634	-	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	332	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr5.170687171.-	chr5	170687171	170687172	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49117	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr2.170712586.-	chr2	170712586	170712587	-	0	NA	"intron (NM_172070, intron 1 of 38)"	SVA_B|Other|Other	-28568	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr19.39032694.-	chr19	39032694	39032695	-	0	NA	"intron (NM_001042723, intron 83 of 104)"	AluJr|SINE|Alu	-75949	NM_007181	11184	Hs.95424	NM_001042600	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
chr9.8857462.-	chr9	8857462	8857463	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123516	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr6.126111891.+	chr6	126111891	126111892	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-18	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr8.118789929.-	chr8	118789929	118789930	-	0	NA	Intergenic	SVA_B|Other|Other	-256964	NM_080651	90390	Hs.492612	NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
chr7.1542293.+	chr7	1542293	1542294	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1725	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr7.38566129.+	chr7	38566129	38566130	+	0	NA	"intron (NM_139316, intron 2 of 19)"	AluSz6|SINE|Alu	105038	NM_139316	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
chr4.190662187.+	chr4	190662187	190662188	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199787	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr17.57884695.-	chr17	57884695	57884696	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33932	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr4.17768670.+	chr4	17768670	17768671	+	0	NA	"intron (NM_015688, intron 1 of 17)"	LTR12C|LTR|ERV1	14465	NM_015688	27146	Hs.18861	NM_015688		FAM184B	-	"family with sequence similarity 184, member B"	protein-coding
chr10.134034488.-	chr10	134034488	134034489	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34074	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr2.90482974.-	chr2	90482974	90482975	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365001	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr3.172180228.+	chr3	172180228	172180229	+	0	NA	Intergenic	AluY|SINE|Alu	-13982	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr10.133203512.+	chr10	133203512	133203513	+	0	NA	Intergenic	Intergenic	-93528	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr4.166248573.+	chr4	166248573	166248574	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-245	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr16.27160365.+	chr16	27160365	27160366	+	0	NA	Intergenic	AluJb|SINE|Alu	-54442	NM_024773	79831	Hs.145717	NM_001145348	ENSG00000155666	KDM8	JMJD5	lysine (K)-specific demethylase 8	protein-coding
chr2.240371681.+	chr2	240371681	240371682	+	0	NA	Intergenic	SVA_D|Other|Other	-49038	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr16.58034691.+	chr16	58034691	58034692	+	0	NA	promoter-TSS (NM_001204911)	promoter-TSS (NM_001204911)	-586	NM_001204911	79650	Hs.408702	NM_001195302	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hUsb1	U6 snRNA biogenesis 1	protein-coding
chr19.34074898.+	chr19	34074898	34074899	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-37963	NM_001127895	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr6.137113634.-	chr6	137113634	137113635	-	0	NA	promoter-TSS (NM_005923)	promoter-TSS (NM_005923)	-22	NM_005923	4217	Hs.186486	NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
chr5.145549238.-	chr5	145549238	145549239	-	0	NA	"intron (NM_020117, intron 4 of 31)"	AluSq2|SINE|Alu	-13056	NM_020117	51520	Hs.432674	NM_020117	ENSG00000133706	LARS	HSPC192|LARS1|LEURS|LEUS|LRS|PIG44|RNTLS|hr025Cl	leucyl-tRNA synthetase	protein-coding
chr20.14330669.+	chr20	14330669	14330670	+	0	NA	"intron (NM_080676, intron 3 of 16)"	AluSx3|SINE|Alu	-12356	NM_013281	23767	Hs.41296	NM_013281	ENSG00000125848	FLRT3	-	fibronectin leucine rich transmembrane protein 3	protein-coding
chr15.89714244.-	chr15	89714244	89714245	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50678	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr20.62479288.-	chr20	62479288	62479289	-	0	NA	Intergenic	Intergenic	13278	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr5.170687196.+	chr5	170687196	170687197	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49092	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr9.35846377.+	chr9	35846377	35846378	+	0	NA	"exon (NM_001042590, exon 8 of 13)"	"exon (NM_001042590, exon 8 of 13)"	-13894	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr11.68303152.+	chr11	68303152	68303153	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74966	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr19.41641958.+	chr19	41641958	41641959	+	0	NA	Intergenic	CpG	21605	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr11.113665998.+	chr11	113665998	113665999	+	0	NA	Intergenic	AluSx|SINE|Alu	15480	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr12.129892259.+	chr12	129892259	129892260	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	495953	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr15.98852730.-	chr15	98852730	98852731	-	0	NA	Intergenic	AluY|SINE|Alu	-204881	NM_182562	283777	Hs.668070	NM_182562	ENSG00000185087	FAM169B	-	"family with sequence similarity 169, member B"	protein-coding
chr9.10786879.+	chr9	10786879	10786880	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174156	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr19.4373891.+	chr19	4373891	4373892	+	0	NA	"intron (NM_003025, intron 1 of 9)"	"intron (NM_003025, intron 1 of 9)"	26524	NM_001199944	6455	Hs.97616	NM_001199943	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3-domain GRB2-like 1	protein-coding
chr1.182025837.+	chr1	182025837	182025838	+	0	NA	"exon (NM_001009992, exon 2 of 2)"	"exon (NM_001009992, exon 2 of 2)"	5010	NM_001009992	127665	Hs.684328	NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
chr11.118978705.-	chr11	118978705	118978706	-	0	NA	"exon (NM_014807, exon 1 of 14)"	"exon (NM_014807, exon 1 of 14)"	-612	NM_014807	9854	Hs.26899	NM_014807		C2CD2L	TMEM24	C2CD2-like	protein-coding
chr9.2673151.+	chr9	2673151	2673152	+	0	NA	Intergenic	AluSc8|SINE|Alu	-44375	NM_133497	169522	Hs.740173	NM_133497	ENSG00000168263	KCNV2	KV11.1|Kv8.2|RCD3B	"potassium channel, subfamily V, member 2"	protein-coding
chr11.118672025.+	chr11	118672025	118672026	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10053	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr7.129803722.-	chr7	129803722	129803723	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41616	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr11.31560828.+	chr11	31560828	31560829	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29531	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr5.18111556.-	chr5	18111556	18111557	-	0	NA	Intergenic	AluY|SINE|Alu	724137	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr6.111924249.-	chr6	111924249	111924250	-	0	NA	TTS (NR_034109)	TTS (NR_034109)	-3228	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr5.1300302.+	chr5	1300302	1300303	+	0	NA	Intergenic	Intergenic	-5140	NM_198253	7015	Hs.492203	NM_001193376	ENSG00000164362	TERT	DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
chr5.92346211.+	chr5	92346211	92346212	+	0	NA	Intergenic	AluSq2|SINE|Alu	560288	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr9.113201969.+	chr9	113201969	113201970	+	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	-101844	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chr19.1252662.-	chr19	1252662	1252663	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4110	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr10.126538800.-	chr10	126538800	126538801	-	0	NA	Intergenic	AluSc|SINE|Alu	-48446	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr12.27144185.+	chr12	27144185	27144186	+	0	NA	"intron (NM_016551, intron 5 of 11)"	AluYb9|SINE|Alu	23154	NM_016551	51768	Hs.438641	NM_016551		TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
chr16.28435245.+	chr16	28435245	28435246	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2530	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr19.58966730.+	chr19	58966730	58966731	+	0	NA	"exon (NM_207395, exon 4 of 4)"	"exon (NM_207395, exon 4 of 4)"	3759	NM_207395	388569	Hs.186970	NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
chr11.3224502.+	chr11	3224502	3224503	+	0	NA	Intergenic	Intergenic	-15060	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr9.86571470.+	chr9	86571470	86571471	+	0	NA	"5' UTR (NM_032307, exon 1 of 4)"	"5' UTR (NM_032307, exon 1 of 4)"	193	NM_032307	84267	Hs.208914	NM_032307	ENSG00000165118	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
chr11.67346411.-	chr11	67346411	67346412	-	0	NA	Intergenic	AluY|SINE|Alu	4655	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr2.91874380.+	chr2	91874380	91874381	+	0	NA	Intergenic	CpG	-26405	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr2.220430171.+	chr2	220430171	220430172	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6097	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr9.1044895.-	chr9	1044895	1044896	-	0	NA	Intergenic	Intergenic	5451	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr5.501514.-	chr5	501514	501515	-	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	-23035	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr19.49865689.+	chr19	49865689	49865690	+	0	NA	promoter-TSS (NM_001256658)	promoter-TSS (NM_001256658)	25	NM_001256658	8463	Hs.515534	NM_001256658	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding
chr7.150812720.+	chr7	150812720	150812721	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28894	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr20.5213516.+	chr20	5213516	5213517	+	0	NA	Intergenic	AluJr4|SINE|Alu	81499	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr5.17924681.+	chr5	17924681	17924682	+	0	NA	Intergenic	AluY|SINE|Alu	-537262	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr1.10727932.-	chr1	10727932	10727933	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128801	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr11.1337318.-	chr11	1337318	1337319	-	0	NA	Intergenic	AluSx1|SINE|Alu	-6380	NR_029409	255512	Hs.588291	NR_029409	ENSG00000255153	LOC255512	-	uncharacterized LOC255512	miscRNA
chr5.22207156.+	chr5	22207156	22207157	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64695	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr10.135104771.+	chr10	135104771	135104772	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14364	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr15.63852381.-	chr15	63852381	63852382	-	0	NA	"intron (NR_046341, intron 8 of 15)"	AluSx1|SINE|Alu	37171	NM_203373	283807	Hs.656997	NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine-rich repeat protein 22	protein-coding
chr6.168159665.-	chr6	168159665	168159666	-	0	NA	Intergenic	Intergenic	-37874	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chrX.122993617.-	chrX	122993617	122993618	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	45	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr22.24094018.+	chr22	24094018	24094019	+	0	NA	promoter-TSS (NM_021916)	promoter-TSS (NM_021916)	-739	NM_021916	7621	Hs.382874	NM_021916	ENSG00000187792	ZNF70	Cos17	zinc finger protein 70	protein-coding
chr4.153456487.+	chr4	153456487	153456488	+	0	NA	promoter-TSS (NM_033632)	promoter-TSS (NM_033632)	-94	NM_001257069	55294	Hs.717081	NM_001013415	ENSG00000109670	FBXW7	AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	"F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase"	protein-coding
chr1.113336843.+	chr1	113336843	113336844	+	0	NA	Intergenic	MER70B|LTR|ERVL	73654	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr17.18785213.-	chr17	18785213	18785214	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16431	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr22.38336365.-	chr22	38336365	38336366	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13289	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr22.30781378.+	chr22	30781378	30781379	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1924	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chrX.43991602.-	chrX	43991602	43991603	-	0	NA	Intergenic	AluY|SINE|Alu	158681	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
chr16.1123367.-	chr16	1123367	1123368	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-611	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr3.195370290.-	chr3	195370290	195370291	-	0	NA	Intergenic	L2a|LINE|L2	14620	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2"	pseudo
chr20.48080580.+	chr20	48080580	48080581	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18601	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr11.70416389.+	chr11	70416389	70416390	+	0	NA	"intron (NM_012309, intron 14 of 22)"	"intron (NM_012309, intron 14 of 22)"	-60810	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	miscRNA
chr12.34364596.+	chr12	34364596	34364597	+	0	NA	Intergenic	GSATX|Satellite|centr	189380	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.18111547.-	chr5	18111547	18111548	-	0	NA	Intergenic	AluY|SINE|Alu	724128	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr6.41987782.+	chr6	41987782	41987783	+	0	NA	"intron (NM_001136017, intron 1 of 4)"	AluY|SINE|Alu	28828	NM_001136126	896	Hs.534307	NM_001136017	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
chr1.99470456.-	chr1	99470456	99470457	-	0	NA	promoter-TSS (NM_001010861)	promoter-TSS (NM_001010861)	7	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr10.65193060.-	chr10	65193060	65193061	-	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSp|SINE|Alu	31929	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr5.1386123.-	chr5	1386123	1386124	-	0	NA	Intergenic	CpG	41121	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1-like	protein-coding
chr19.5051947.+	chr19	5051947	5051948	+	0	NA	"intron (NM_015015, intron 6 of 22)"	"intron (NM_015015, intron 6 of 22)"	82823	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr14.77494861.-	chr14	77494861	77494862	-	0	NA	"5' UTR (NM_024496, exon 1 of 1)"	"5' UTR (NM_024496, exon 1 of 1)"	-181	NM_024496	64207	Hs.744332	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
chr18.19630080.+	chr18	19630080	19630081	+	0	NA	Intergenic	AluY|SINE|Alu	-119324	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr2.47943780.-	chr2	47943780	47943781	-	0	NA	Intergenic	LTR13|LTR|ERVK	66441	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr7.5396353.+	chr7	5396353	5396354	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66824	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr14.30477356.+	chr14	30477356	30477357	+	0	NA	Intergenic	AluYb8|SINE|Alu	-80457	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
chr17.37768960.+	chr17	37768960	37768961	+	0	NA	Intergenic	Intergenic	-4785	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr11.67351076.-	chr11	67351076	67351077	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-10	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr20.20772508.+	chr20	20772508	20772509	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79242	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr11.66865557.-	chr11	66865557	66865558	-	0	NA	Intergenic	AluSq|SINE|Alu	21183	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr19.58428083.+	chr19	58428083	58428084	+	0	NA	promoter-TSS (NM_152475)	promoter-TSS (NM_152475)	-105	NM_152475	147687	Hs.567710	NM_152475		ZNF417	-	zinc finger protein 417	protein-coding
chr1.12040476.-	chr1	12040476	12040477	-	0	NA	"5' UTR (NM_014874, exon 1 of 19)"	"5' UTR (NM_014874, exon 1 of 19)"	-238	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr3.113871514.-	chr3	113871514	113871515	-	0	NA	"intron (NM_033663, intron 3 of 7)"	"intron (NM_033663, intron 3 of 7)"	-26385	NM_033663	1814	Hs.121478	NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
chr9.72101715.-	chr9	72101715	72101716	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157474	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr12.112407452.+	chr12	112407452	112407453	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43571	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr7.2716306.-	chr7	2716306	2716307	-	0	NA	Intergenic	Intergenic	2857	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr21.37627690.-	chr21	37627690	37627691	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64797	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr7.56109630.-	chr7	56109630	56109631	-	0	NA	"intron (NM_004577, intron 1 of 7)"	"intron (NM_004577, intron 1 of 7)"	-9638	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr8.23131081.+	chr8	23131081	23131082	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14531	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr3.113473160.+	chr3	113473160	113473161	+	0	NA	"intron (NM_001690, intron 1 of 14)"	AluJo|SINE|Alu	7294	NM_001690	523	Hs.477155	NM_001690	ENSG00000114573	ATP6V1A	ATP6A1|ATP6V1A1|HO68|VA68|VPP2|Vma1	"ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A"	protein-coding
chr8.23097366.+	chr8	23097366	23097367	+	0	NA	Intergenic	AluY|SINE|Alu	-3784	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr12.33592847.-	chr12	33592847	33592848	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	93	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr1.5987646.+	chr1	5987646	5987647	+	0	NA	"intron (NM_015102, intron 11 of 29)"	"intron (NM_015102, intron 11 of 29)"	-64712	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr9.34329562.+	chr9	34329562	34329563	+	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	58	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr17.21032006.+	chr17	21032006	21032007	+	0	NA	"intron (NM_015510, intron 1 of 6)"	AluY|SINE|Alu	1765	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr1.158012588.-	chr1	158012588	158012589	-	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	-49525	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr7.139162653.+	chr7	139162653	139162654	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5804	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr12.53369502.+	chr12	53369502	53369503	+	0	NA	Intergenic	Intergenic	-25852	NM_001256293	3856	Hs.708445	NM_001256282	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
chr20.62457899.+	chr20	62457899	62457900	+	0	NA	Intergenic	AluY|SINE|Alu	-21043	NM_025224	140685	Hs.585028	NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
chr3.126260590.-	chr3	126260590	126260591	-	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	-17168	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chrX.153599054.-	chrX	153599054	153599055	-	0	NA	"intron (NM_001456, intron 2 of 46)"	CpG	-3952	NM_001110556	2316	Hs.195464	NM_001110556	ENSG00000196924	FLNA	ABP-280|ABPX|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	"filamin A, alpha"	protein-coding
chr14.101892586.+	chr14	101892586	101892587	+	0	NA	Intergenic	AluY|SINE|Alu	129427	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr12.109137811.-	chr12	109137811	109137812	-	0	NA	Intergenic	AluSg|SINE|Alu	12485	NM_014325	23603	Hs.330384	NM_001105237	ENSG00000110880	CORO1C	HCRNN4	"coronin, actin binding protein, 1C"	protein-coding
chr6.64268029.+	chr6	64268029	64268030	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13891	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr10.127462247.-	chr10	127462247	127462248	-	0	NA	"intron (NM_147191, intron 2 of 6)"	CpG	-2143	NM_147191	118856	Hs.314141	NM_147191	ENSG00000154485	MMP21	-	matrix metallopeptidase 21	protein-coding
chr20.46019532.+	chr20	46019532	46019533	+	0	NA	Intergenic	AluY|SINE|Alu	-34058	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr7.5205936.+	chr7	5205936	5205937	+	0	NA	Intergenic	AluSq2|SINE|Alu	-21759	NR_034163	645700	Hs.690815	NR_034163	ENSG00000159904	ZNF890P	-	"zinc finger protein 890, pseudogene"	pseudo
chr16.56171995.-	chr16	56171995	56171996	-	0	NA	"intron (NR_027078, intron 2 of 4)"	AluJb|SINE|Alu	-53011	NR_027078	283856	Hs.707433	NR_027078	ENSG00000246379	LOC283856	-	uncharacterized LOC283856	miscRNA
chr9.35846399.-	chr9	35846399	35846400	-	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	13872	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr21.43109585.-	chr21	43109585	43109586	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10123	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr6.159416860.+	chr6	159416860	159416861	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4338	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr3.158905764.-	chr3	158905764	158905765	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	"intron (NM_001197114, intron 1 of 9)"	85272	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr1.145400411.+	chr1	145400411	145400412	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12780	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr3.126195057.-	chr3	126195057	126195058	-	0	NA	promoter-TSS (NM_025112)	promoter-TSS (NM_025112)	295	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr1.22959171.-	chr1	22959171	22959172	-	0	NA	Intergenic	AluSx|SINE|Alu	3947	NM_015991	712	Hs.632379	NM_015991	ENSG00000173372	C1QA	-	"complement component 1, q subcomponent, A chain"	protein-coding
chr1.212973166.+	chr1	212973166	212973167	+	0	NA	"intron (NM_001146170, intron 4 of 8)"	AluSz6|SINE|Alu	7996	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
chrX.53111688.+	chrX	53111688	53111689	+	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	146	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr4.88032421.+	chr4	88032421	88032422	+	0	NA	"intron (NM_001166693, intron 11 of 20)"	AluY|SINE|Alu	104268	NM_005935	4299	Hs.480190	NM_001166693	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	"AF4/FMR2 family, member 1"	protein-coding
chr19.8394128.-	chr19	8394128	8394129	-	0	NA	"intron (NM_198471, intron 7 of 10)"	AluSx|SINE|Alu	-7744	NM_001031	6234	Hs.740394	NM_001031		RPS28	S28	ribosomal protein S28	protein-coding
chr19.1871379.-	chr19	1871379	1871380	-	0	NA	Intergenic	Intergenic	7815	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr12.20930588.-	chr12	20930588	20930589	-	0	NA	Intergenic	LTR12C|LTR|ERV1	33050	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr22.19172039.+	chr22	19172039	19172040	+	0	NA	"intron (NM_001835, intron 28 of 31)"	"intron (NM_001835, intron 28 of 31)"	-5701	NR_046298	6576	Hs.111024	NM_001256534	ENSG00000100075	SLC25A1	CTP|SEA|SLC20A3	"solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1"	protein-coding
chr8.22594722.-	chr8	22594722	22594723	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43907	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr18.63211145.-	chr18	63211145	63211146	-	0	NA	Intergenic	AluY|SINE|Alu	206343	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr22.17719114.+	chr22	17719114	17719115	+	0	NA	Intergenic	AluSg|SINE|Alu	-28335	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr4.42317273.+	chr4	42317273	42317274	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-82583	NM_001080505	152573	Hs.370904	NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa homolog 3 (Xenopus laevis)	protein-coding
chr8.81372724.+	chr8	81372724	81372725	+	0	NA	Intergenic	AluY|SINE|Alu	-25130	NM_001277145	65986	Hs.709604	NM_001105539	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
chr2.122878819.-	chr2	122878819	122878820	-	0	NA	Intergenic	AluY|SINE|Alu	-365698	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr15.91370832.+	chr15	91370832	91370833	+	0	NA	Intergenic	AluSz|SINE|Alu	-41053	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr19.15718051.-	chr19	15718051	15718052	-	0	NA	Intergenic	AluY|SINE|Alu	7978	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chrX.69654659.-	chrX	69654659	69654660	-	0	NA	Intergenic	CpG	10046	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr10.128594939.-	chr10	128594939	128594940	-	0	NA	"intron (NM_001380, intron 1 of 51)"	CpG	-916	NM_001380	1793	Hs.159195	NM_001380	ENSG00000150760	DOCK1	DOCK180|ced5	dedicator of cytokinesis 1	protein-coding
chr19.1871385.-	chr19	1871385	1871386	-	0	NA	Intergenic	Intergenic	7821	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr17.34053760.+	chr17	34053760	34053761	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4919	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr5.12186579.+	chr5	12186579	12186580	+	0	NA	Intergenic	AluYa5|SINE|Alu	-282469	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	"catenin (cadherin-associated protein), delta 2"	protein-coding
chr21.47403575.-	chr21	47403575	47403576	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1912	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chrM.9327.-	chrM	9327	9328	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.21206320.-	chr6	21206320	21206321	-	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	387652	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr14.35800652.-	chr14	35800652	35800653	-	0	NA	Intergenic	AluSx|SINE|Alu	-39078	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr5.14460479.-	chr5	14460479	14460480	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121412	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr4.103422395.+	chr4	103422395	103422396	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-91	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr9.16914697.-	chr9	16914697	16914698	-	0	NA	Intergenic	AluY|SINE|Alu	43911	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr19.58125584.-	chr19	58125584	58125585	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	246	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr12.57498111.+	chr12	57498111	57498112	+	0	NA	"intron (NR_033659, intron 10 of 20)"	"intron (NR_033659, intron 10 of 20)"	5978	NM_001178079	6778	Hs.524518	NM_001178078	ENSG00000166888	STAT6	D12S1644|IL-4-STAT|STAT6B|STAT6C	"signal transducer and activator of transcription 6, interleukin-4 induced"	protein-coding
chr9.131585088.+	chr9	131585088	131585089	+	0	NA	TTS (NM_004435)	TTS (NM_004435)	4309	NM_004435	2021	Hs.224137	NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
chr20.4729562.-	chr20	4729562	4729563	-	0	NA	Intergenic	Intergenic	8248	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr1.16970725.-	chr1	16970725	16970726	-	0	NA	Intergenic	Intergenic	1344	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr1.26501355.-	chr1	26501355	26501356	-	0	NA	Intergenic	AluSq|SINE|Alu	2626	NM_006314	10256	Hs.16232	NM_006314	ENSG00000142675	CNKSR1	CNK|CNK1|KSR	connector enhancer of kinase suppressor of Ras 1	protein-coding
chr14.102109515.+	chr14	102109515	102109516	+	0	NA	Intergenic	AluY|SINE|Alu	81827	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr1.28964999.-	chr1	28964999	28965000	-	0	NA	"intron (NM_005644, intron 1 of 5)"	AluSx|SINE|Alu	-4605	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chr3.122695612.+	chr3	122695612	122695613	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-631	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr22.29279692.+	chr22	29279692	29279693	+	0	NA	promoter-TSS (NM_001206998)	promoter-TSS (NM_001206998)	-63	NM_001206998	84133	Hs.732114	NM_001206998	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
chr6.151727630.-	chr6	151727630	151727631	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14953	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr1.2260013.+	chr1	2260013	2260014	+	0	NA	"intron (NM_024848, intron 12 of 13)"	"intron (NM_024848, intron 12 of 13)"	24087	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr2.239058204.+	chr2	239058204	239058205	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10841	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr1.120270214.-	chr1	120270214	120270215	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15795	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr12.50254951.-	chr12	50254951	50254952	-	0	NA	Intergenic	SVA_D|Other|Other	18039	NM_181708	144233	Hs.142736	NM_181708		BCDIN3D	-	BCDIN3 domain containing	protein-coding
chr18.23534270.-	chr18	23534270	23534271	-	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-136341	NM_001007559	6760	Hs.129261	NM_001007559	ENSG00000141380	SS18	SSXT|SYT	"synovial sarcoma translocation, chromosome 18"	protein-coding
chr6.39760890.+	chr6	39760890	39760891	+	0	NA	"5' UTR (NM_015345, exon 1 of 25)"	"5' UTR (NM_015345, exon 1 of 25)"	117	NM_015345	23500	Hs.357128	NM_001201427	ENSG00000146122	DAAM2	dJ90A20A.1	dishevelled associated activator of morphogenesis 2	protein-coding
chr9.137804615.-	chr9	137804615	137804616	-	0	NA	"intron (NM_002003, intron 6 of 8)"	"intron (NM_002003, intron 6 of 8)"	-5191	NM_002003	2219	Hs.440898	NM_002003	ENSG00000085265	FCN1	FCNM	ficolin (collagen/fibrinogen domain containing) 1	protein-coding
chr13.62067809.+	chr13	62067809	62067810	+	0	NA	Intergenic	AluY|SINE|Alu	-78154	NM_022843	64881	Hs.391781	NM_022843	ENSG00000197991	PCDH20	PCDH13	protocadherin 20	protein-coding
chr8.128907059.+	chr8	128907059	128907060	+	0	NA	"intron (NR_003367, intron 1 of 7)"	"intron (NR_003367, intron 1 of 7)"	4185	NR_003367	5820	Hs.675281	NR_003367	ENSG00000249859	PVT1	LINC00079|NCRNA00079	Pvt1 oncogene (non-protein coding)	miscRNA
chr7.129803695.-	chr7	129803695	129803696	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41643	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr6.168655525.-	chr6	168655525	168655526	-	0	NA	Intergenic	HERVL-int|LTR|ERVL	-64877	NM_214462	168002	Hs.673059	NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|RP11-503C24.7|bA503C24.7	"dapper, antagonist of beta-catenin, homolog 2 (Xenopus laevis)"	protein-coding
chr21.40984663.-	chr21	40984663	40984664	-	0	NA	promoter-TSS (NR_026543)	promoter-TSS (NR_026543)	-86	NR_026543	114041	Hs.375120	NM_153754	ENSG00000184809	C21orf88	-	chromosome 21 open reading frame 88	miscRNA
chr16.1123337.+	chr16	1123337	1123338	+	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	581	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr22.30781368.+	chr22	30781368	30781369	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1934	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr10.135104719.+	chr10	135104719	135104720	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14312	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr10.21843641.+	chr10	21843641	21843642	+	0	NA	"intron (NM_001195627, intron 4 of 4)"	AluSc|SINE|Alu	20067	NM_001195626	8028	Hs.30385	NM_001195626	ENSG00000078403	MLLT10	AF10	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10"	protein-coding
chr1.61398471.-	chr1	61398471	61398472	-	0	NA	Intergenic	AluY|SINE|Alu	144475	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr1.19972995.-	chr1	19972995	19972996	-	0	NA	"intron (NM_001204086, intron 1 of 3)"	"intron (NM_001204086, intron 1 of 3)"	-735	NM_001204086	4681	Hs.654502	NM_001204084	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	"neuroblastoma 1, DAN family BMP antagonist"	protein-coding
chr21.47860062.-	chr21	47860062	47860063	-	0	NA	"exon (NM_006031, exon 42 of 47)"	"exon (NM_006031, exon 42 of 47)"	18800	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr19.33554695.+	chr19	33554695	33554696	+	0	NA	"intron (NM_033103, intron 1 of 14)"	"intron (NM_033103, intron 1 of 14)"	1129	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr16.89723903.+	chr16	89723903	89723904	+	0	NA	promoter-TSS (NM_153025)	promoter-TSS (NM_153025)	-249	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr14.76127603.-	chr14	76127603	76127604	-	0	NA	promoter-TSS (NM_015072)	promoter-TSS (NM_015072)	-52	NM_015072	23093	Hs.709609	NM_015072	ENSG00000119685	TTLL5	KIAA0998|STAMP	"tubulin tyrosine ligase-like family, member 5"	protein-coding
chr11.63715977.+	chr11	63715977	63715978	+	0	NA	"intron (NM_024771, intron 3 of 7)"	AluY|SINE|Alu	9535	NM_024771	79829	Hs.523753	NM_024771	ENSG00000110583	NAA40	NAT11|PATT1	"N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)"	protein-coding
chr1.161393132.+	chr1	161393132	161393133	+	0	NA	Intergenic	SVA_D|Other|Other	-55459	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chr21.11107117.+	chr21	11107117	11107118	+	0	NA	Intergenic	CpG	-8180	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr11.95179274.+	chr11	95179274	95179275	+	0	NA	Intergenic	MER52A|LTR|ERV1	-213569	NM_001271594	143686	Hs.120633	NM_001271594		SESN3	SEST3	sestrin 3	protein-coding
chr2.48079387.+	chr2	48079387	48079388	+	0	NA	"intron (NM_001190274, intron 1 of 22)"	AluSx1|SINE|Alu	36471	NM_025133	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chr5.177538264.-	chr5	177538264	177538265	-	0	NA	Intergenic	AluSp|SINE|Alu	2292	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr13.112597788.-	chr13	112597788	112597789	-	0	NA	Intergenic	MIRc|SINE|MIR	124125	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr13.21644932.-	chr13	21644932	21644933	-	0	NA	Intergenic	AluSx|SINE|Alu	9210	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr8.128328693.-	chr8	128328693	128328694	-	0	NA	Intergenic	Intergenic	99164	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr10.134034451.-	chr10	134034451	134034452	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34037	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr17.27717849.+	chr17	27717849	27717850	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-94	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr12.133366788.-	chr12	133366788	133366789	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28337	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr16.3203780.+	chr16	3203780	3203781	+	0	NA	Intergenic	AluSg|SINE|Alu	18646	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr6.158700171.+	chr6	158700171	158700172	+	0	NA	Intergenic	AluY|SINE|Alu	-33521	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr5.1466233.-	chr5	1466233	1466234	-	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	20690	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr17.43255891.-	chr17	43255891	43255892	-	0	NA	Intergenic	AluY|SINE|Alu	-17627	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr5.32209054.+	chr5	32209054	32209055	+	0	NA	Intergenic	SVA_F|Other|Other	-34629	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
chr6.165205810.-	chr6	165205810	165205811	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517301	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr13.114899253.-	chr13	114899253	114899254	-	0	NA	Intergenic	Intergenic	1158	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.224724768.+	chr2	224724768	224724769	+	0	NA	Intergenic	AluSp|SINE|Alu	-22449	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr4.84864621.+	chr4	84864621	84864622	+	0	NA	Intergenic	SVA_D|Other|Other	407151	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr17.47735113.-	chr17	47735113	47735114	-	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	-20412	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr22.49289893.-	chr22	49289893	49289894	-	0	NA	"intron (NR_038944, intron 4 of 6)"	"intron (NR_038944, intron 4 of 6)"	-27311	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr2.15359977.-	chr2	15359977	15359978	-	0	NA	"intron (NM_015909, intron 47 of 51)"	SVA_E|Other|Other	-341495	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
chr17.22068847.-	chr17	22068847	22068848	-	0	NA	Intergenic	REP522|Satellite|telo	-46410	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr12.38493568.+	chr12	38493568	38493569	+	0	NA	Intergenic	Intergenic	-216989	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr1.61398340.-	chr1	61398340	61398341	-	0	NA	Intergenic	AluY|SINE|Alu	144606	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr17.4810684.-	chr17	4810684	4810685	-	0	NA	Intergenic	AluY|SINE|Alu	4315	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	"cholinergic receptor, nicotinic, epsilon (muscle)"	protein-coding
chr22.41521419.-	chr22	41521419	41521420	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluY|SINE|Alu	-32805	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr2.101816749.-	chr2	101816749	101816750	-	0	NA	Intergenic	AluY|SINE|Alu	48903	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	"TBC1 domain family, member 8 (with GRAM domain)"	protein-coding
chr2.43253943.+	chr2	43253943	43253944	+	0	NA	Intergenic	Intergenic	199802	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr3.185305636.+	chr3	185305636	185305637	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1605	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr9.134165367.+	chr9	134165367	134165368	+	0	NA	"5' UTR (NM_032728, exon 1 of 2)"	"5' UTR (NM_032728, exon 1 of 2)"	286	NM_032728	84814	Hs.134292	NM_032728	ENSG00000160539	PPAPDC3	C9orf67|NET39	phosphatidic acid phosphatase type 2 domain containing 3	protein-coding
chr16.1807930.+	chr16	1807930	1807931	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13780	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr12.120566804.+	chr12	120566804	120566805	+	0	NA	"intron (NM_006836, intron 57 of 57)"	AluY|SINE|Alu	-12161	NM_006861	11021	Hs.524788	NM_001167606	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	"RAB35, member RAS oncogene family"	protein-coding
chr6.1610283.+	chr6	1610283	1610284	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-398	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr1.103747471.-	chr1	103747471	103747472	-	0	NA	Intergenic	AluYa5|SINE|Alu	173419	NM_001854	1301	Hs.523446	NM_001190709	ENSG00000060718	COL11A1	CO11A1|COLL6|STL2	"collagen, type XI, alpha 1"	protein-coding
chr12.106606571.+	chr12	106606571	106606572	+	0	NA	Intergenic	L1PA7|LINE|L1	35142	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr7.101457588.+	chr7	101457588	101457589	+	0	NA	Intergenic	CpG	-1596	NM_001202545	1523	Hs.191482	NM_001202543	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
chr20.59868948.-	chr20	59868948	59868949	-	0	NA	"intron (NM_001794, intron 2 of 15)"	"intron (NM_001794, intron 2 of 15)"	-41466	NM_001794	1002	Hs.473231	NM_001252338		CDH4	CAD4|RCAD	"cadherin 4, type 1, R-cadherin (retinal)"	protein-coding
chr12.32064874.+	chr12	32064874	32064875	+	0	NA	Intergenic	AluY|SINE|Alu	-47479	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr1.160239888.-	chr1	160239888	160239889	-	0	NA	Intergenic	AluJo|SINE|Alu	7538	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr2.85691637.+	chr2	85691637	85691638	+	0	NA	Intergenic	AluSg7|SINE|Alu	29719	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr7.13901618.-	chr7	13901618	13901619	-	0	NA	Intergenic	AluJb|SINE|Alu	-124521	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr1.220909532.-	chr1	220909532	220909533	-	0	NA	Intergenic	AluSx1|SINE|Alu	12144	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr8.142397021.+	chr8	142397021	142397022	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-19656	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr16.89117868.-	chr16	89117868	89117869	-	0	NA	Intergenic	Intergenic	42349	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr13.96681137.+	chr13	96681137	96681138	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24599	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr15.66998971.-	chr15	66998971	66998972	-	0	NA	"intron (NM_005585, intron 1 of 3)"	"intron (NM_005585, intron 1 of 3)"	1959	NM_001142861	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr4.32829764.-	chr4	32829764	32829765	-	0	NA	Intergenic	AluY|SINE|Alu	-2107727	NM_032457	5099	Hs.479439	NM_001173523	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH	protocadherin 7	protein-coding
chr12.7317116.+	chr12	7317116	7317117	+	0	NA	Intergenic	AluSx1|SINE|Alu	-24643	NM_001131026	5830	Hs.567327	NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1	peroxisomal biogenesis factor 5	protein-coding
chr8.126398084.-	chr8	126398084	126398085	-	0	NA	Intergenic	Intergenic	44479	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr5.17207854.-	chr5	17207854	17207855	-	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	9078	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr5.1466231.-	chr5	1466231	1466232	-	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	20688	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr6.8388436.+	chr6	8388436	8388437	+	0	NA	Intergenic	LTR9|LTR|ERV1	47358	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr1.212898492.+	chr1	212898492	212898493	+	0	NA	Intergenic	SVA_B|Other|Other	-25165	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr10.32238885.+	chr10	32238885	32238886	+	0	NA	Intergenic	AluY|SINE|Alu	-21081	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr2.136403856.+	chr2	136403856	136403857	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19111	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chrX.7012497.-	chrX	7012497	7012498	-	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	53404	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr18.46502022.-	chr18	46502022	46502023	-	0	NA	Intergenic	CpG	24941	NM_001190821	4092	Hs.465087	NM_001190821	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
chr8.67618043.+	chr8	67618043	67618044	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6610	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr1.156731502.-	chr1	156731502	156731503	-	0	NA	Intergenic	AluSc|SINE|Alu	5772	NM_005973	5546	Hs.516948	NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	papillary renal cell carcinoma (translocation-associated)	protein-coding
chr13.114843186.-	chr13	114843186	114843187	-	0	NA	"intron (NM_007368, intron 1 of 23)"	"intron (NM_007368, intron 1 of 23)"	-54909	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr15.20494047.+	chr15	20494047	20494048	+	0	NA	"intron (NR_038836, intron 4 of 5)"	AluSx|SINE|Alu	6050	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr20.57267643.+	chr20	57267643	57267644	+	0	NA	promoter-TSS (NM_024663)	promoter-TSS (NM_024663)	-219	NM_024663	79716	Hs.654868	NM_001204872	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase-like 1	protein-coding
chrX.133639189.+	chrX	133639189	133639190	+	0	NA	Intergenic	AluSx|SINE|Alu	35103	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr8.140686759.-	chr8	140686759	140686760	-	0	NA	"intron (NM_016601, intron 1 of 2)"	MIRc|SINE|MIR	-28540	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr2.170684186.+	chr2	170684186	170684187	+	0	NA	"exon (NM_172070, exon 1 of 39)"	"exon (NM_172070, exon 1 of 39)"	168	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr6.106301639.-	chr6	106301639	106301640	-	0	NA	Intergenic	SVA_D|Other|Other	232556	NM_001198	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	"PR domain containing 1, with ZNF domain"	protein-coding
chr22.49181552.-	chr22	49181552	49181553	-	0	NA	Intergenic	AluSx1|SINE|Alu	-5445	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	miscRNA
chr2.237068209.-	chr2	237068209	237068210	-	0	NA	Intergenic	CpG	-8443	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr12.1171296.+	chr12	1171296	1171297	+	0	NA	"intron (NR_027949, intron 2 of 15)"	AluY|SINE|Alu	70892	NR_027946	23085	Hs.601216	NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
chr16.80278044.+	chr16	80278044	80278045	+	0	NA	Intergenic	SVA_F|Other|Other	-296810	NM_130897	83657	Hs.98849	NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	"dynein, light chain, roadblock-type 2"	protein-coding
chr8.67617943.-	chr8	67617943	67617944	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluY|SINE|Alu	6710	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr7.36338582.+	chr7	36338582	36338583	+	0	NA	"intron (NM_030636, intron 7 of 7)"	"intron (NM_030636, intron 7 of 7)"	68200	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr16.71647933.+	chr16	71647933	71647934	+	0	NA	Intergenic	AluSz|SINE|Alu	-12123	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr3.124468914.+	chr3	124468914	124468915	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19701	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr1.92407863.+	chr1	92407863	92407864	+	0	NA	Intergenic	AluY|SINE|Alu	-7065	NM_207189	676	Hs.482520	NM_001242805	ENSG00000137948	BRDT	BRD6|CT9	"bromodomain, testis-specific"	protein-coding
chr16.88772899.-	chr16	88772899	88772900	-	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	-8	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr13.112726536.+	chr13	112726536	112726537	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4623	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr8.26241057.-	chr8	26241057	26241058	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-534	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr8.3501039.-	chr8	3501039	3501040	-	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	-1351289	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr3.127392030.-	chr3	127392030	127392031	-	0	NA	TTS (NM_015720)	TTS (NM_015720)	-249	NR_033429	80325	Hs.107812	NM_032548	ENSG00000114626	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding
chr1.8393116.+	chr1	8393116	8393117	+	0	NA	"intron (NM_001080397, intron 4 of 7)"	"intron (NM_001080397, intron 4 of 7)"	8726	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	"solute carrier family 45, member 1"	protein-coding
chr14.102983837.-	chr14	102983837	102983838	-	0	NA	Intergenic	CpG	7709	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr20.17960344.+	chr20	17960344	17960345	+	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	10582	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr16.81731146.-	chr16	81731146	81731147	-	0	NA	"intron (NM_198390, intron 14 of 20)"	MIR3|SINE|MIR	-32187	NR_045112	100129617	Hs.657151	NR_045112		LOC100129617	-	uncharacterized LOC100129617	miscRNA
chr2.237068275.+	chr2	237068275	237068276	+	0	NA	Intergenic	CpG	8377	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr17.22012656.+	chr17	22012656	22012657	+	0	NA	Intergenic	Intergenic	-9781	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chrX.53111676.-	chrX	53111676	53111677	-	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	-134	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.237205451.+	chr1	237205451	237205452	+	0	NA	promoter-TSS (NM_001035)	promoter-TSS (NM_001035)	-251	NM_001035	6262	Hs.738571	NM_001035	ENSG00000198626	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
chr14.60336398.-	chr14	60336398	60336399	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1159	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr11.120428559.+	chr11	120428559	120428560	+	0	NA	Intergenic	AluY|SINE|Alu	-102469	NM_014619	2900	Hs.568901	NM_014619		GRIK4	EAA1|GRIK|GluK4|KA1	"glutamate receptor, ionotropic, kainate 4"	protein-coding
chr10.44870333.+	chr10	44870333	44870334	+	0	NA	TTS (NM_001033886)	TTS (NM_001033886)	10212	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr14.32736851.-	chr14	32736851	32736852	-	0	NA	Intergenic	AluY|SINE|Alu	61628	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
chr2.62741047.-	chr2	62741047	62741048	-	0	NA	Intergenic	AluY|SINE|Alu	7443	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr12.34192034.-	chr12	34192034	34192035	-	0	NA	Intergenic	AluY|SINE|Alu	-16818	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr17.73901350.-	chr17	73901350	73901351	-	0	NA	promoter-TSS (NM_032478)	promoter-TSS (NM_032478)	169	NM_032478	64978	Hs.442609	NM_032478	ENSG00000204316	MRPL38	L38MT|MRP-L3|MRP-L38|RPML3	mitochondrial ribosomal protein L38	protein-coding
chr2.240187917.-	chr2	240187917	240187918	-	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	39240	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr12.34500199.+	chr12	34500199	34500200	+	0	NA	Intergenic	Intergenic	324983	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.38595134.-	chr2	38595134	38595135	-	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	-9298	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr15.57210818.-	chr15	57210818	57210819	-	0	NA	promoter-TSS (NM_207037)	promoter-TSS (NM_207037)	15	NM_207037	6938	Hs.511504	NM_003205	ENSG00000140262	TCF12	HEB|HTF4|HsT17266|bHLHb20	transcription factor 12	protein-coding
chr8.117309716.+	chr8	117309716	117309717	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27581	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr5.141451781.+	chr5	141451781	141451782	+	0	NA	Intergenic	AluSq|SINE|Alu	-36543	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr8.1390786.-	chr8	1390786	1390787	-	0	NA	Intergenic	Intergenic	58746	NM_001277161	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr20.13271217.-	chr20	13271217	13271218	-	0	NA	"intron (NM_080826, intron 4 of 5)"	AluY|SINE|Alu	50883	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	miscRNA
chr22.22002132.+	chr22	22002132	22002133	+	0	NA	Intergenic	AluY|SINE|Alu	-5138	NR_030622	100126318		NR_030622	ENSG00000212102	MIR301B	MIRN301B	microRNA 301b	miscRNA
chr5.78890159.-	chr5	78890159	78890160	-	0	NA	Intergenic	AluY|SINE|Alu	18084	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr4.86391844.-	chr4	86391844	86391845	-	0	NA	Intergenic	AluY|SINE|Alu	4440	NM_001025616	83478	Hs.444229	NM_001025616	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
chr19.33776971.-	chr19	33776971	33776972	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16459	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr7.74447138.+	chr7	74447138	74447139	+	0	NA	Intergenic	AluSx1|SINE|Alu	42561	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr9.719224.+	chr9	719224	719225	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12418	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chrX.53808326.-	chrX	53808326	53808327	-	0	NA	Intergenic	AluYb8|SINE|Alu	94629	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr2.192374873.+	chr2	192374873	192374874	+	0	NA	Intergenic	AluY|SINE|Alu	-167925	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr14.97183890.+	chr14	97183890	97183891	+	0	NA	Intergenic	AluY|SINE|Alu	-79794	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chrX.49682926.+	chrX	49682926	49682927	+	0	NA	Intergenic	AluSz|SINE|Alu	-4299	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr2.30144478.-	chr2	30144478	30144479	-	0	NA	promoter-TSS (NM_004304)	promoter-TSS (NM_004304)	1	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr18.66366011.-	chr18	66366011	66366012	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16342	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr1.247470012.-	chr1	247470012	247470013	-	0	NA	"intron (NM_032752, intron 8 of 8)"	AluSx1|SINE|Alu	-25033	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr1.4282140.+	chr1	4282140	4282141	+	0	NA	Intergenic	AluSg7|SINE|Alu	-189971	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	miscRNA
chr17.48037714.+	chr17	48037714	48037715	+	0	NA	Intergenic	MIR|SINE|MIR	-8848	NM_138281	1748	Hs.591167	NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
chr17.18785216.+	chr17	18785216	18785217	+	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	16434	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr10.118500974.+	chr10	118500974	118500975	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1111	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr17.4435081.+	chr17	4435081	4435082	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23600	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr2.25391020.+	chr2	25391020	25391021	+	0	NA	"intron (NM_001035256, intron 1 of 3)"	AluSp|SINE|Alu	539	NM_000939	5443	Hs.1897	NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
chr1.43189342.-	chr1	43189342	43189343	-	0	NA	Intergenic	AluJr|SINE|Alu	-16583	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr8.143695757.+	chr8	143695757	143695758	+	0	NA	promoter-TSS (NM_015193)	promoter-TSS (NM_015193)	76	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr3.38106477.-	chr3	38106477	38106478	-	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	-25781	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr5.2391230.-	chr5	2391230	2391231	-	0	NA	Intergenic	Intergenic	-360539	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr2.103461881.-	chr2	103461881	103461882	-	0	NA	Intergenic	AluSx|SINE|Alu	-83391	NM_144632	130827	Hs.436203	NM_144632	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
chr15.86312070.+	chr15	86312070	86312071	+	0	NA	"exon (NM_022480, exon 2 of 3)"	"exon (NM_022480, exon 2 of 3)"	1739	NR_031682	100302121		NR_031682	ENSG00000221634	MIR1276	MIRN1276|hsa-mir-1276	microRNA 1276	miscRNA
chr2.55647048.+	chr2	55647048	55647049	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	9	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr17.78075293.-	chr17	78075293	78075294	-	0	NA	promoter-TSS (NM_000152)	promoter-TSS (NM_000152)	62	NM_001079804	2548	Hs.1437	NM_000152	ENSG00000171298	GAA	LYAG	"glucosidase, alpha; acid"	protein-coding
chr17.40484874.-	chr17	40484874	40484875	-	0	NA	"intron (NM_003150, intron 10 of 23)"	AluSx|SINE|Alu	-45309	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr4.87023925.+	chr4	87023925	87023926	+	0	NA	"intron (NM_138981, intron 1 of 8)"	AluSc8|SINE|Alu	4881	NM_138981	5602	Hs.125503	NM_002753	ENSG00000109339	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chr12.132313905.+	chr12	132313905	132313906	+	0	NA	"intron (NM_016155, intron 1 of 9)"	CpG	964	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr4.26862263.-	chr4	26862263	26862264	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	50	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr4.26862486.+	chr4	26862486	26862487	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	173	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr16.58300809.-	chr16	58300809	58300810	-	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	-16969	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr9.128056626.-	chr9	128056626	128056627	-	0	NA	"intron (NM_015635, intron 1 of 26)"	"intron (NM_015635, intron 1 of 26)"	-32515	NM_015635	26130	Hs.495134	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
chr3.68753743.+	chr3	68753743	68753744	+	0	NA	Intergenic	AluSx3|SINE|Alu	228018	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr18.33543848.-	chr18	33543848	33543849	-	0	NA	Intergenic	AluY|SINE|Alu	8740	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr19.7123224.+	chr19	7123224	7123225	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53753	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr17.2905678.+	chr17	2905678	2905679	+	0	NA	"intron (NM_015085, intron 14 of 24)"	"intron (NM_015085, intron 14 of 24)"	61223	NM_014566	8386	Hs.553508	NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31	"olfactory receptor, family 1, subfamily D, member 5"	protein-coding
chrX.25544583.-	chrX	25544583	25544584	-	0	NA	Intergenic	AluSc5|SINE|Alu	510518	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
chr1.8021840.-	chr1	8021840	8021841	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-126	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr2.241363391.+	chr2	241363391	241363392	+	0	NA	Intergenic	Intergenic	-11724	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr12.50621253.+	chr12	50621253	50621254	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4765	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr16.656868.+	chr16	656868	656869	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16695	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr16.1815044.-	chr16	1815044	1815045	-	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	-6666	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chrX.48871382.-	chrX	48871382	48871383	-	0	NA	Intergenic	AluY|SINE|Alu	12707	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr7.69745535.+	chr7	69745535	69745536	+	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	681629	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr7.66017133.+	chr7	66017133	66017134	+	0	NA	Intergenic	AluSx1|SINE|Alu	26365	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr13.19728189.-	chr13	19728189	19728190	-	0	NA	Intergenic	Intergenic	-11067	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chrX.32910798.+	chrX	32910798	32910799	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127519	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr1.10989798.-	chr1	10989798	10989799	-	0	NA	Intergenic	AluSq|SINE|Alu	-52296	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chr5.9328753.-	chr5	9328753	9328754	-	0	NA	"intron (NM_003966, intron 4 of 22)"	AluSq|SINE|Alu	-217480	NM_003966	9037	Hs.27621	NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A"	protein-coding
chr9.35605333.+	chr9	35605333	35605334	+	0	NA	promoter-TSS (NM_006285)	promoter-TSS (NM_006285)	52	NM_006285	7016	Hs.708096	NM_006285	ENSG00000107140	TESK1	-	testis-specific kinase 1	protein-coding
chr21.11130086.+	chr21	11130086	11130087	+	0	NA	Intergenic	AluSz6|SINE|Alu	-31149	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr16.31996256.+	chr16	31996256	31996257	+	0	NA	Intergenic	AluY|SINE|Alu	111177	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr17.73893121.-	chr17	73893121	73893122	-	0	NA	promoter-TSS (NM_173547)	promoter-TSS (NM_173547)	37	NM_001256124	201292	Hs.189823	NM_001256124	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
chr13.110551489.-	chr13	110551489	110551490	-	0	NA	Intergenic	AluSx|SINE|Alu	112575	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr7.5275422.+	chr7	5275422	5275423	+	0	NA	Intergenic	AluSg|SINE|Alu	21522	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr2.113642166.+	chr2	113642166	113642167	+	0	NA	Intergenic	AluJb|SINE|Alu	-28382	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr7.6454038.-	chr7	6454038	6454039	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	-33605	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr1.108507789.-	chr1	108507789	108507790	-	0	NA	promoter-TSS (NM_006113)	promoter-TSS (NM_006113)	244	NM_006113	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr2.237068216.-	chr2	237068216	237068217	-	0	NA	Intergenic	CpG	-8436	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr19.47627905.-	chr19	47627905	47627906	-	0	NA	Intergenic	AluY|SINE|Alu	6175	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr2.219433688.-	chr2	219433688	219433689	-	0	NA	promoter-TSS (NM_020935)	promoter-TSS (NM_020935)	-385	NM_001271634	9125	Hs.148767	NM_001271634		RQCD1	CNOT9|CT129|RCD-1|RCD1	RCD1 required for cell differentiation1 homolog (S. pombe)	protein-coding
chr2.220283370.-	chr2	220283370	220283371	-	0	NA	"exon (NM_001927, exon 1 of 9)"	"exon (NM_001927, exon 1 of 9)"	-271	NM_001927	1674	Hs.594952	NM_001927	ENSG00000175084	DES	CSM1|CSM2	desmin	protein-coding
chr8.141276690.+	chr8	141276690	141276691	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191171	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr10.80673558.-	chr10	80673558	80673559	-	0	NA	Intergenic	Intergenic	-153647	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	miscRNA
chr20.62108040.+	chr20	62108040	62108041	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4047	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chrX.147073793.+	chrX	147073793	147073794	+	0	NA	"intron (NM_152578, intron 1 of 5)"	SVA_F|Other|Other	10944	NM_152578	158521	Hs.128580	NM_152578	ENSG00000176988	FMR1NB	CT37|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding
chr10.86997113.+	chr10	86997113	86997114	+	0	NA	Intergenic	AluY|SINE|Alu	-340375	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	miscRNA
chrX.130461469.+	chrX	130461469	130461470	+	0	NA	Intergenic	SVA_D|Other|Other	-38066	NM_001555	3547	Hs.22111	NM_001170961	ENSG00000147255	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	"immunoglobulin superfamily, member 1"	protein-coding
chr3.88595889.+	chr3	88595889	88595890	+	0	NA	Intergenic	AluSc8|SINE|Alu	-396873	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr12.118421911.-	chr12	118421911	118421912	-	0	NA	Intergenic	Intergenic	15883	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr2.120964360.+	chr2	120964360	120964361	+	0	NA	Intergenic	Intergenic	16624	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr19.14096066.+	chr19	14096066	14096067	+	0	NA	"intron (NM_002918, intron 2 of 20)"	AluSz6|SINE|Alu	21068	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chr19.19410481.+	chr19	19410481	19410482	+	0	NA	"intron (NM_172231, intron 7 of 13)"	AluY|SINE|Alu	20840	NM_172231	57794	Hs.515274	NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G patch domain containing 1	protein-coding
chr9.128986145.+	chr9	128986145	128986146	+	0	NA	Intergenic	Intergenic	-102978	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr2.10916511.-	chr2	10916511	10916512	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36449	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr20.5213538.+	chr20	5213538	5213539	+	0	NA	Intergenic	AluJr4|SINE|Alu	81477	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr20.35737804.-	chr20	35737804	35737805	-	0	NA	"intron (NM_152503, intron 21 of 23)"	AluSq10|SINE|Alu	13394	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding
chr6.166722230.-	chr6	166722230	166722231	-	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	359	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr15.41865547.+	chr15	41865547	41865548	+	0	NA	"exon (NM_006293, exon 17 of 19)"	"exon (NM_006293, exon 17 of 19)"	14327	NM_006293	7301	Hs.381282	NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|RSE|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
chr1.179051078.+	chr1	179051078	179051079	+	0	NA	promoter-TSS (NM_022371)	promoter-TSS (NM_022371)	-34	NM_022371	64222	Hs.584957	NM_022371		TOR3A	ADIR|ADIR2	"torsin family 3, member A"	protein-coding
chr12.106980988.+	chr12	106980988	106980989	+	0	NA	"intron (NM_213594, intron 1 of 17)"	CpG	4303	NM_213594	5992	Hs.388827	NM_001206691	ENSG00000111783	RFX4	NYD-SP10	"regulatory factor X, 4 (influences HLA class II expression)"	protein-coding
chr19.21789922.-	chr19	21789922	21789923	-	0	NA	Intergenic	SVA_D|Other|Other	-101485	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr17.25676754.-	chr17	25676754	25676755	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55648	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr8.28669065.-	chr8	28669065	28669066	-	0	NA	"intron (NR_026826, intron 6 of 14)"	AluJb|SINE|Alu	-78367	NM_001172562	55756	Hs.162397	NM_001145159	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
chr1.227982854.+	chr1	227982854	227982855	+	0	NA	Intergenic	Intergenic	-20564	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr17.14204682.-	chr17	14204682	14204683	-	0	NA	"5' UTR (NM_006041, exon 1 of 2)"	"5' UTR (NM_006041, exon 1 of 2)"	-176	NM_006041	9953	Hs.48384	NM_006041		HS3ST3B1	30ST3B1|3OST3B1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding
chr2.239770174.-	chr2	239770174	239770175	-	0	NA	"intron (NM_001271893, intron 1 of 1)"	"intron (NM_001271893, intron 1 of 1)"	-13501	NM_001271893	117581	Hs.422585	NM_001271893	ENSG00000233608	TWIST2	DERMO1|FFDD3|SETLSS|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding
chr14.100070052.+	chr14	100070052	100070053	+	0	NA	"exon (NM_001144995, exon 1 of 6)"	"exon (NM_001144995, exon 1 of 6)"	675	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
chr21.27382882.-	chr21	27382882	27382883	-	0	NA	"intron (NM_001136016, intron 6 of 16)"	AluSx1|SINE|Alu	-129826	NM_001136016	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
chr6.160426417.+	chr6	160426417	160426418	+	0	NA	"non-coding (NR_047514, exon 1 of 1)"	"non-coding (NR_047514, exon 1 of 1)"	2279	NR_047514	100271873	Hs.742166	NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	miscRNA
chr17.18575717.-	chr17	18575717	18575718	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-777	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr19.18057804.-	chr19	18057804	18057805	-	0	NA	Intergenic	AluSx|SINE|Alu	4307	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr18.11086411.+	chr18	11086411	11086412	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62350	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr12.132157767.+	chr12	132157767	132157768	+	0	NA	Intergenic	Intergenic	-37865	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr13.111467825.-	chr13	111467825	111467826	-	0	NA	Intergenic	Intergenic	-54830	NR_027701	283487	Hs.245390	NM_178514		LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	miscRNA
chr2.237068211.+	chr2	237068211	237068212	+	0	NA	Intergenic	CpG	8441	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr20.54205931.-	chr20	54205931	54205932	-	0	NA	Intergenic	AluYk4|SINE|Alu	-374597	NM_080617	140689	Hs.741877	NM_080617	ENSG00000054803	CBLN4	CBLNL1	cerebellin 4 precursor	protein-coding
chr2.240371710.-	chr2	240371710	240371711	-	0	NA	Intergenic	SVA_D|Other|Other	49067	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr6.111924236.+	chr6	111924236	111924237	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3241	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr16.87360626.-	chr16	87360626	87360627	-	0	NA	Intergenic	Intergenic	9600	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr3.47744680.+	chr3	47744680	47744681	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78725	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr3.48533709.-	chr3	48533709	48533710	-	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	-7774	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr7.25609212.-	chr7	25609212	25609213	-	0	NA	Intergenic	AluSz|SINE|Alu	-271418	NR_046486	100873753		NR_046486		RNU6-16	-	"RNA, U6 small nuclear 16"	snRNA
chr2.149395135.+	chr2	149395135	149395136	+	0	NA	Intergenic	AluY|SINE|Alu	-7425	NM_015630	26122	Hs.23270	NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chr10.135270888.-	chr10	135270888	135270889	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3456	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr4.77348096.+	chr4	77348096	77348097	+	0	NA	Intergenic	AluY|SINE|Alu	-8157	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr22.38166142.-	chr22	38166142	38166143	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	-23901	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr2.132978690.+	chr2	132978690	132978691	+	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	35963	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr3.8721291.-	chr3	8721291	8721292	-	0	NA	Intergenic	Intergenic	27527	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chrX.9366102.-	chrX	9366102	9366103	-	0	NA	Intergenic	AluY|SINE|Alu	65233	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr16.31932475.+	chr16	31932475	31932476	+	0	NA	Intergenic	AluY|SINE|Alu	47396	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr16.75896508.+	chr16	75896508	75896509	+	0	NA	Intergenic	AluSq2|SINE|Alu	214873	NM_018975	54386	Hs.301419	NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	"telomeric repeat binding factor 2, interacting protein"	protein-coding
chrX.100277476.+	chrX	100277476	100277477	+	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	29629	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr20.52362417.-	chr20	52362417	52362418	-	0	NA	Intergenic	AluSx|SINE|Alu	-129831	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr9.100747352.+	chr9	100747352	100747353	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1863	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr8.56758282.-	chr8	56758282	56758283	-	0	NA	Intergenic	AluSx3|SINE|Alu	34104	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr17.46916965.+	chr17	46916965	46916966	+	0	NA	"intron (NM_001261395, intron 1 of 11)"	AluSx1|SINE|Alu	8615	NM_001261393	10241	Hs.514920	NM_001261390	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
chr22.24237289.-	chr22	24237289	24237290	-	0	NA	"exon (NM_002415, exon 3 of 3)"	"exon (NM_002415, exon 3 of 3)"	-724	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr8.145988016.+	chr8	145988016	145988017	+	0	NA	Intergenic	Intergenic	-7046	NM_138367	90987	Hs.534516	NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
chr12.112161427.-	chr12	112161427	112161428	-	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_F|Other|Other	-37570	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr19.5148571.-	chr19	5148571	5148572	-	0	NA	"intron (NM_015015, intron 21 of 22)"	"intron (NM_015015, intron 21 of 22)"	-179447	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr1.40953735.+	chr1	40953735	40953736	+	0	NA	"intron (NM_198494, intron 3 of 5)"	"intron (NM_198494, intron 3 of 5)"	10433	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr14.72399464.+	chr14	72399464	72399465	+	0	NA	promoter-TSS (NM_001204420)	promoter-TSS (NM_001204420)	308	NM_001204424	9628	Hs.509872	NM_001204416	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
chr17.4708672.-	chr17	4708672	4708673	-	0	NA	Intergenic	AluSp|SINE|Alu	1724	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr10.73848189.+	chr10	73848189	73848190	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	342	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr9.128986144.+	chr9	128986144	128986145	+	0	NA	Intergenic	Intergenic	-102979	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr17.40316805.+	chr17	40316805	40316806	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9743	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr16.31448999.-	chr16	31448999	31449000	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5349	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr7.73389545.+	chr7	73389545	73389546	+	0	NA	Intergenic	Intergenic	-52882	NM_001081753	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr3.31574011.+	chr3	31574011	31574012	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-480	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr1.54966482.+	chr1	54966482	54966483	+	0	NA	Intergenic	AluSq|SINE|Alu	-47325	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr4.185174233.-	chr4	185174233	185174234	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35119	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr14.77927231.-	chr14	77927231	77927232	-	0	NA	"intron (NM_012111, intron 2 of 8)"	AluSc8|SINE|Alu	-2858	NM_012111	10598	Hs.204041	NM_012111	ENSG00000100591	AHSA1	AHA1|C14orf3|p38	"AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)"	protein-coding
chr19.1049327.+	chr19	1049327	1049328	+	0	NA	"exon (NM_019112, exon 18 of 47)"	"exon (NM_019112, exon 18 of 47)"	9225	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chrX.144902990.+	chrX	144902990	144902991	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	124	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr2.27526318.+	chr2	27526318	27526319	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4812	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr7.1286187.+	chr7	1286187	1286188	+	0	NA	Intergenic	CpG	13533	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr21.47403566.+	chr21	47403566	47403567	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1903	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr8.12613185.-	chr8	12613185	12613186	-	0	NA	promoter-TSS (NM_152271)	promoter-TSS (NM_152271)	193	NM_152271	91694	Hs.180178	NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
chr3.128194224.-	chr3	128194224	128194225	-	0	NA	Intergenic	Intergenic	8133	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr22.18532590.+	chr22	18532590	18532591	+	0	NA	Intergenic	AluSx1|SINE|Alu	20439	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chrX.133565046.-	chrX	133565046	133565047	-	0	NA	Intergenic	AluSp|SINE|Alu	29129	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr4.114652894.-	chr4	114652894	114652895	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30189	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr7.5355958.+	chr7	5355958	5355959	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33397	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr2.88125009.-	chr2	88125009	88125010	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	(CCG)n|Simple_repeat|Simple_repeat	-277	NM_001078170	729857	Hs.728970	NM_001078170		RGPD2	NUP358|RANBP2L2|RGP2	RANBP2-like and GRIP domain containing 2	protein-coding
chr17.15627092.+	chr17	15627092	15627093	+	0	NA	Intergenic	AluY|SINE|Alu	-8499	NM_178571	353149	Hs.567880	NM_178571	ENSG00000214946	TBC1D26	-	"TBC1 domain family, member 26"	protein-coding
chr16.31932482.+	chr16	31932482	31932483	+	0	NA	Intergenic	AluY|SINE|Alu	47403	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr12.34191944.-	chr12	34191944	34191945	-	0	NA	Intergenic	AluSp|SINE|Alu	-16728	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.40801247.-	chr5	40801247	40801248	-	0	NA	Intergenic	SVA_E|Other|Other	2950	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr4.186058044.+	chr4	186058044	186058045	+	0	NA	Intergenic	AluJb|SINE|Alu	-6373	NM_001151	291	Hs.246506	NM_001151		SLC25A4	AAC1|ANT|ANT1|PEO2|PEO3|T1	"solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4"	protein-coding
chr2.232202249.-	chr2	232202249	232202250	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25170	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr12.26964550.-	chr12	26964550	26964551	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21581	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr1.10551180.+	chr1	10551180	10551181	+	0	NA	"intron (NM_004565, intron 1 of 8)"	AluSx|SINE|Alu	16177	NM_004565	5195	Hs.149983	NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
chr13.77460355.+	chr13	77460355	77460356	+	0	NA	"5' UTR (NM_138444, exon 1 of 1)"	"5' UTR (NM_138444, exon 1 of 1)"	185	NM_138444	115207	Hs.644125	NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerisation domain containing 12	protein-coding
chr12.62886299.+	chr12	62886299	62886300	+	0	NA	"intron (NM_015026, intron 2 of 34)"	AluYb8|SINE|Alu	25702	NM_015026	23041	Hs.389378	NM_015026	ENSG00000061987	MON2	-	MON2 homolog (S. cerevisiae)	protein-coding
chr9.35604882.+	chr9	35604882	35604883	+	0	NA	promoter-TSS (NM_006285)	promoter-TSS (NM_006285)	-399	NM_006285	7016	Hs.708096	NM_006285	ENSG00000107140	TESK1	-	testis-specific kinase 1	protein-coding
chr22.30781341.-	chr22	30781341	30781342	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	-1961	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr16.17617267.+	chr16	17617267	17617268	+	0	NA	Intergenic	AluSz|SINE|Alu	-52529	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr6.168395139.-	chr6	168395139	168395140	-	0	NA	Intergenic	AluSx|SINE|Alu	17520	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr10.134597807.-	chr10	134597807	134597808	-	0	NA	TTS (NM_005539)	TTS (NM_005539)	-1730	NM_177400	84504	Hs.134013	NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
chr11.67966397.+	chr11	67966397	67966398	+	0	NA	"intron (NM_016028, intron 1 of 9)"	AluSc8|SINE|Alu	14387	NM_017635	51111	Hs.632120	NM_016028	ENSG00000110066	SUV420H1	CGI85|KMT5B	suppressor of variegation 4-20 homolog 1 (Drosophila)	protein-coding
chr7.155137602.-	chr7	155137602	155137603	-	0	NA	Intergenic	CpG	-48116	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr17.3867562.+	chr17	3867562	3867563	+	0	NA	"exon (NM_174957, exon 1 of 21)"	"exon (NM_174957, exon 1 of 21)"	196	NM_174957	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	"ATPase, Ca++ transporting, ubiquitous"	protein-coding
chr16.1115473.+	chr16	1115473	1115474	+	0	NA	"non-coding (NR_027242, exon 4 of 4)"	"non-coding (NR_027242, exon 4 of 4)"	-7283	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr3.49047735.-	chr3	49047735	49047736	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3098	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr8.125234434.-	chr8	125234434	125234435	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150506	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chrX.29584308.+	chrX	29584308	29584309	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-649367	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr5.113523363.+	chr5	113523363	113523364	+	0	NA	Intergenic	AluY|SINE|Alu	-174653	NM_021614	3781	Hs.98280	NM_021614	ENSG00000080709	KCNN2	KCa2.2|SK2|SKCA2|hSK2	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2"	protein-coding
chr17.18575714.+	chr17	18575714	18575715	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	780	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr16.3203776.-	chr16	3203776	3203777	-	0	NA	Intergenic	AluSg|SINE|Alu	-18642	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr5.178157702.+	chr5	178157702	178157703	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	1	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr3.129670180.+	chr3	129670180	129670181	+	0	NA	Intergenic	Intergenic	-22934	NM_007117	7200	Hs.732877	NM_007117	ENSG00000170893	TRH	-	thyrotropin-releasing hormone	protein-coding
chr11.71702918.-	chr11	71702918	71702919	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7040	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr3.38106473.-	chr3	38106473	38106474	-	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	-25777	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr1.115078620.-	chr1	115078620	115078621	-	0	NA	Intergenic	Intergenic	24839	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chr11.19881574.+	chr11	19881574	19881575	+	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	-99945	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr1.67218090.+	chr1	67218090	67218091	+	0	NA	promoter-TSS (NM_152665)	promoter-TSS (NM_152665)	-50	NM_152665	200132	Hs.479226	NM_152665	ENSG00000152760	TCTEX1D1	RP11-266I14.2	Tctex1 domain containing 1	protein-coding
chr10.135104770.+	chr10	135104770	135104771	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14363	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr2.92172356.+	chr2	92172356	92172357	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43197	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr5.86116441.-	chr5	86116441	86116442	-	0	NA	Intergenic	AluSp|SINE|Alu	-200127	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr15.93458666.+	chr15	93458666	93458667	+	0	NA	"intron (NM_001042572, intron 2 of 12)"	AluY|SINE|Alu	11037	NR_036136	100422995		NR_036136		MIR3175	-	microRNA 3175	miscRNA
chr9.719241.-	chr9	719241	719242	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12435	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr3.196255847.-	chr3	196255847	196255848	-	0	NA	Intergenic	CpG	13610	NM_001077657	255798	Hs.631933	NM_001077657	ENSG00000214097	C3orf43	-	chromosome 3 open reading frame 43	protein-coding
chr5.134826362.-	chr5	134826362	134826363	-	0	NA	Intergenic	CpG	38273	NM_001099221	497189	Hs.552091	NM_001099221		TIFAB	-	"TRAF-interacting protein with forkhead-associated domain, family member B"	protein-coding
chr6.57322614.-	chr6	57322614	57322615	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140192	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr8.1312677.-	chr8	1312677	1312678	-	0	NA	Intergenic	Intergenic	61850	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr11.16894098.-	chr11	16894098	16894099	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133950	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr7.105023768.+	chr7	105023768	105023769	+	0	NA	"intron (NM_182692, intron 2 of 15)"	AluY|SINE|Alu	5573	NM_182692	6733	Hs.285197	NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
chr9.36859990.+	chr9	36859990	36859991	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4315	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr19.50670092.-	chr19	50670092	50670093	-	0	NA	Intergenic	AluSg|SINE|Alu	3554	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr7.100642202.-	chr7	100642202	100642203	-	0	NA	"exon (NM_001164462, exon 2 of 12)"	"exon (NM_001164462, exon 2 of 12)"	21162	NM_001040105	140453	Hs.271819	NM_001040105	ENSG00000169876	MUC17	MUC3	"mucin 17, cell surface associated"	protein-coding
chr10.76620839.-	chr10	76620839	76620840	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34668	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr17.59482855.+	chr17	59482855	59482856	+	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	5598	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr4.174463999.+	chr4	174463999	174464000	+	0	NA	Intergenic	AluSp|SINE|Alu	12390	NR_003679	79804	Hs.61435	NR_003679	ENSG00000237125	NBLA00301	DEIN	Nbla00301	miscRNA
chr6.33500224.-	chr6	33500224	33500225	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47846	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr3.22843322.-	chr3	22843322	22843323	-	0	NA	Intergenic	L1PA2|LINE|L1	401462	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr20.62108064.+	chr20	62108064	62108065	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4071	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr22.41715424.-	chr22	41715424	41715425	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17917	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr3.38106466.+	chr3	38106466	38106467	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25770	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr12.77339570.+	chr12	77339570	77339571	+	0	NA	Intergenic	AluY|SINE|Alu	-66771	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr16.3755358.-	chr16	3755358	3755359	-	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	-12240	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr5.1137715.+	chr5	1137715	1137716	+	0	NA	Intergenic	Intergenic	-25543	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr14.52118776.-	chr14	52118776	52118777	-	0	NA	promoter-TSS (NR_037676)	promoter-TSS (NR_037676)	-200	NM_152330	122786	Hs.434914	NM_001042481	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
chr9.111476110.+	chr9	111476110	111476111	+	0	NA	Intergenic	L1PA7|LINE|L1	142165	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr9.138959055.+	chr9	138959055	138959056	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28076	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr3.9774161.-	chr3	9774161	9774162	-	0	NA	"intron (NM_001003694, intron 1 of 13)"	"intron (NM_001003694, intron 1 of 13)"	-727	NM_004634	7862	Hs.1004	NM_001003694	ENSG00000156983	BRPF1	BR140	"bromodomain and PHD finger containing, 1"	protein-coding
chr22.46522751.-	chr22	46522751	46522752	-	0	NA	Intergenic	Intergenic	-13185	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr2.102559040.+	chr2	102559040	102559041	+	0	NA	Intergenic	AluY|SINE|Alu	-49266	NM_004633	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	"interleukin 1 receptor, type II"	protein-coding
chr7.1798872.-	chr7	1798872	1798873	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50074	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr2.20424105.-	chr2	20424105	20424106	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-822	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr19.18180409.+	chr19	18180409	18180410	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17288	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr20.21377676.+	chr20	21377676	21377677	+	0	NA	"exon (NM_033176, exon 1 of 2)"	"exon (NM_033176, exon 1 of 2)"	371	NM_033176	644524	Hs.456662	NM_033176		NKX2-4	NKX2.4|NKX2D	NK2 homeobox 4	protein-coding
chr12.131298374.-	chr12	131298374	131298375	-	0	NA	"intron (NM_194356, intron 3 of 10)"	"intron (NM_194356, intron 3 of 10)"	-25445	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr14.105158924.-	chr14	105158924	105158925	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2981	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr8.26541439.+	chr8	26541439	26541440	+	0	NA	Intergenic	SVA_A|Other|Other	105518	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr16.3203708.+	chr16	3203708	3203709	+	0	NA	Intergenic	AluSg|SINE|Alu	18574	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr9.80898824.+	chr9	80898824	80898825	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13235	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr5.25101117.+	chr5	25101117	25101118	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-260425	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr14.76127586.-	chr14	76127586	76127587	-	0	NA	promoter-TSS (NM_015072)	promoter-TSS (NM_015072)	-35	NM_015072	23093	Hs.709609	NM_015072	ENSG00000119685	TTLL5	KIAA0998|STAMP	"tubulin tyrosine ligase-like family, member 5"	protein-coding
chr15.64013608.+	chr15	64013608	64013609	+	0	NA	"intron (NM_003922, intron 19 of 77)"	AluSx|SINE|Alu	112539	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
chr14.22016192.+	chr14	22016192	22016193	+	0	NA	Intergenic	AluY|SINE|Alu	-10855	NM_005407	6297	Hs.743336	NM_005407	ENSG00000165821	SALL2	HSAL2|Sal-2|ZNF795|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding
chr16.58021644.+	chr16	58021644	58021645	+	0	NA	"3' UTR (NM_199456, exon 8 of 8)"	"3' UTR (NM_199456, exon 8 of 8)"	11305	NM_199456	374739	Hs.132976	NM_199046		TEPP	-	"testis, prostate and placenta expressed"	protein-coding
chr19.4141919.-	chr19	4141919	4141920	-	0	NA	Intergenic	AluY|SINE|Alu	11679	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr11.75095320.+	chr11	75095320	75095321	+	0	NA	Intergenic	AluSz|SINE|Alu	-15215	NM_001260506	6188	Hs.740358	NM_001005	ENSG00000149273	RPS3	S3	ribosomal protein S3	protein-coding
chr20.33005251.-	chr20	33005251	33005252	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	48879	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr4.185174133.-	chr4	185174133	185174134	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35019	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr1.183670880.+	chr1	183670880	183670881	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48432	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr19.33776984.-	chr19	33776984	33776985	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16446	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr4.1541987.+	chr4	1541987	1541988	+	0	NA	Intergenic	Intergenic	143731	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr7.158268168.-	chr7	158268168	158268169	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57337	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr2.227660776.+	chr2	227660776	227660777	+	0	NA	"exon (NM_005544, exon 1 of 2)"	"exon (NM_005544, exon 1 of 2)"	2730	NM_005544	3667	Hs.471508	NM_005544		IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
chr12.58059383.+	chr12	58059383	58059384	+	0	NA	Intergenic	SVA_A|Other|Other	-28355	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr1.209280873.+	chr1	209280873	209280874	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-321295	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
chr2.54950876.-	chr2	54950876	54950877	-	0	NA	Intergenic	CpG	1273	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
chr11.62418852.-	chr11	62418852	62418853	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-1922	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr10.24476810.+	chr10	24476810	24476811	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20910	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr10.133842646.+	chr10	133842646	133842647	+	0	NA	Intergenic	SVA_F|Other|Other	-47211	NM_004052	664	Hs.144873	NM_004052		BNIP3	NIP3	BCL2/adenovirus E1B 19kDa interacting protein 3	protein-coding
chr15.57662558.+	chr15	57662558	57662559	+	0	NA	Intergenic	AluSx|SINE|Alu	-6145	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr22.32868745.+	chr22	32868745	32868746	+	0	NA	Intergenic	AluY|SINE|Alu	-1962	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr10.64646645.+	chr10	64646645	64646646	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-67718	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr16.58288606.+	chr16	58288606	58288607	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4766	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr16.12163791.+	chr16	12163791	12163792	+	0	NA	"intron (NM_032167, intron 10 of 20)"	AluYc|SINE|Alu	93189	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr17.80392614.+	chr17	80392614	80392615	+	0	NA	"intron (NM_173620, intron 5 of 11)"	AluSx1|SINE|Alu	14988	NM_001193655	79415	Hs.163113	NM_001033046	ENSG00000178927	C17orf62	-	chromosome 17 open reading frame 62	protein-coding
chrX.113575457.+	chrX	113575457	113575458	+	0	NA	Intergenic	AluJb|SINE|Alu	-243094	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr10.76198250.-	chr10	76198250	76198251	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262003	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr7.4516795.-	chr7	4516795	4516796	-	0	NA	Intergenic	AluSx1|SINE|Alu	205135	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr15.55726765.-	chr15	55726765	55726766	-	0	NA	"intron (NR_037923, intron 7 of 15)"	BC200|scRNA|scRNA	-26042	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr8.144518203.-	chr8	144518203	144518204	-	0	NA	Intergenic	Intergenic	5601	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr3.14349491.+	chr3	14349491	14349492	+	0	NA	Intergenic	Intergenic	-94615	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr19.53979687.+	chr19	53979687	53979688	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8698	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr2.6835243.-	chr2	6835243	6835244	-	0	NA	Intergenic	AluSq|SINE|Alu	-75199	NR_038369	400941	Hs.446195	NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	miscRNA
chr16.4346169.-	chr16	4346169	4346170	-	0	NA	Intergenic	AluSc8|SINE|Alu	23168	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4 (activating enhancer binding protein 4)	protein-coding
chr6.21897095.-	chr6	21897095	21897096	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230420	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr1.151573451.-	chr1	151573451	151573452	-	0	NA	Intergenic	SVA_E|Other|Other	11211	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr12.112407429.+	chr12	112407429	112407430	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43594	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr17.37124240.-	chr17	37124240	37124241	-	0	NA	promoter-TSS (NM_001008777)	promoter-TSS (NM_001008777)	585	NM_001008777	494188	Hs.549536	NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
chr17.79611144.-	chr17	79611144	79611145	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1795	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr3.164119729.-	chr3	164119729	164119730	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676554	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr17.45349539.+	chr17	45349539	45349540	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18331	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr19.5409925.-	chr19	5409925	5409926	-	0	NA	Intergenic	AluY|SINE|Alu	45501	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr13.111268093.+	chr13	111268093	111268094	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	162	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr2.172953016.+	chr2	172953016	172953017	+	0	NA	"3' UTR (NM_178120, exon 3 of 3)"	"3' UTR (NM_178120, exon 3 of 3)"	2808	NM_001038493	1745	Hs.407015	NM_001038493	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
chr2.60924464.-	chr2	60924464	60924465	-	0	NA	Intergenic	AluSg|SINE|Alu	58901	NM_022894	64895	Hs.387471	NM_022894		PAPOLG	-	poly(A) polymerase gamma	protein-coding
chr17.16010301.-	chr17	16010301	16010302	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87652	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr10.59080717.-	chr10	59080717	59080718	-	0	NA	Intergenic	AluY|SINE|Alu	16398	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr8.86574384.+	chr8	86574384	86574385	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	358	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr7.63233386.-	chr7	63233386	63233387	-	0	NA	Intergenic	Intergenic	-151918	NR_036270	100422848		NR_036270	ENSG00000265214	MIR4283-2	-	microRNA 4283-2	miscRNA
chr6.160985672.-	chr6	160985672	160985673	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53516	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr13.79183593.-	chr13	79183593	79183594	-	0	NA	"intron (NR_047001, intron 5 of 5)"	CpG	5898	NM_006237	5457	Hs.654522	NM_006237	ENSG00000152192	POU4F1	BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
chr1.155846738.+	chr1	155846738	155846739	+	0	NA	"intron (NM_152280, intron 2 of 3)"	AluSx|SINE|Alu	17478	NM_152280	23208	Hs.32984	NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin XI	protein-coding
chr11.66997309.-	chr11	66997309	66997310	-	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	10197	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr18.77244886.+	chr18	77244886	77244887	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84560	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr1.43081259.+	chr1	43081259	43081260	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42789	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr6.151727656.-	chr6	151727656	151727657	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14979	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr10.96163377.+	chr10	96163377	96163378	+	0	NA	"intron (NM_015188, intron 1 of 12)"	(CTGGGG)n|Simple_repeat|Simple_repeat	1191	NM_015188	23232	Hs.500598	NM_015188	ENSG00000108239	TBC1D12	-	"TBC1 domain family, member 12"	protein-coding
chr17.4642905.+	chr17	4642905	4642906	+	0	NA	promoter-TSS (NM_001136046)	promoter-TSS (NM_001136046)	318	NM_001100812	58191	Hs.513885	NM_001100812	ENSG00000161921	CXCL16	CXCLG16|SR-PSOX|SRPSOX	chemokine (C-X-C motif) ligand 16	protein-coding
chr9.116226011.-	chr9	116226011	116226012	-	0	NA	promoter-TSS (NM_017790)	promoter-TSS (NM_017790)	-31	NM_017790	5998	Hs.494875	NM_001276260	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
chr17.61777470.+	chr17	61777470	61777471	+	0	NA	promoter-TSS (NM_030576)	promoter-TSS (NM_030576)	49	NM_030576	80774	Hs.591166	NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
chr16.2762115.+	chr16	2762115	2762116	+	0	NA	TTS (NM_031948)	TTS (NM_031948)	8437	NM_031948	83886	Hs.332878	NM_031948		PRSS27	CAPH2|MPN	"protease, serine 27"	protein-coding
chr4.840852.-	chr4	840852	840853	-	0	NA	Intergenic	AluSp|SINE|Alu	20907	NM_006651	10815	Hs.478930	NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1	complexin 1	protein-coding
chr12.129892188.+	chr12	129892188	129892189	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496024	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr11.1122286.+	chr11	1122286	1122287	+	0	NA	Intergenic	Intergenic	47411	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chrM.6367.+	chrM	6367	6368	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.26387258.+	chr9	26387258	26387259	+	0	NA	Intergenic	AluY|SINE|Alu	320585	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr3.9429728.+	chr3	9429728	9429729	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9446	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr2.70199636.+	chr2	70199636	70199637	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10239	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr15.23086487.-	chr15	23086487	23086488	-	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	51	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr8.144503711.-	chr8	144503711	144503712	-	0	NA	Intergenic	CpG	-8891	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.136633783.+	chr2	136633783	136633784	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	264	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr4.26862244.-	chr4	26862244	26862245	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	69	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr22.46936381.+	chr22	46936381	46936382	+	0	NA	Intergenic	AluSx|SINE|Alu	-3314	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr15.29132032.-	chr15	29132032	29132033	-	0	NA	Intergenic	CpG	38211	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr16.432443.-	chr16	432443	432444	-	0	NA	promoter-TSS (NM_021259)	promoter-TSS (NM_021259)	-202	NR_024453	100134368	Hs.621241	NR_024453	ENSG00000236829	LOC100134368	-	uncharacterized LOC100134368	miscRNA
chr3.128161128.-	chr3	128161128	128161129	-	0	NA	Intergenic	Intergenic	21309	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr14.97183860.+	chr14	97183860	97183861	+	0	NA	Intergenic	AluY|SINE|Alu	-79824	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr9.24897734.+	chr9	24897734	24897735	+	0	NA	Intergenic	AluSc|SINE|Alu	-352060	NM_001271706	100129669	Hs.573530	XM_003846250	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
chr2.87016593.-	chr2	87016593	87016594	-	0	NA	"intron (NM_001768, intron 3 of 5)"	CpG-15196	-2244	NM_171827	925	Hs.85258	NM_001145873	ENSG00000153563	CD8A	CD8|Leu2|MAL|p32	CD8a molecule	protein-coding
chr4.123063301.-	chr4	123063301	123063302	-	0	NA	Intergenic	AluSg7|SINE|Alu	28457	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr1.21893062.-	chr1	21893062	21893063	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57204	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr7.20817634.+	chr7	20817634	20817635	+	0	NA	Intergenic	CpG	8874	NM_198956	221833	Hs.195922	NM_182700		SP8	BTD	Sp8 transcription factor	protein-coding
chr18.11086422.-	chr18	11086422	11086423	-	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	-62339	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr16.3755354.+	chr16	3755354	3755355	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12244	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr17.45822453.-	chr17	45822453	45822454	-	0	NA	"exon (NM_013351, exon 6 of 6)"	"exon (NM_013351, exon 6 of 6)"	-11843	NM_013351	30009	Hs.272409	NM_013351	ENSG00000073861	TBX21	T-PET|T-bet|TBET|TBLYM	T-box 21	protein-coding
chr14.102101592.+	chr14	102101592	102101593	+	0	NA	Intergenic	CpG	73904	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr17.73439489.-	chr17	73439489	73439490	-	0	NA	Intergenic	AluSg4|SINE|Alu	13175	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr11.67351085.+	chr11	67351085	67351086	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	19	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr7.155246317.-	chr7	155246317	155246318	-	0	NA	Intergenic	Intergenic	4507	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr2.126700695.-	chr2	126700695	126700696	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712816	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr4.91281351.+	chr4	91281351	91281352	+	0	NA	"intron (NM_207491, intron 3 of 7)"	AluSx3|SINE|Alu	125169	NM_207491	401145	Hs.654735	NM_001145065	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
chr12.92086130.+	chr12	92086130	92086131	+	0	NA	Intergenic	AluSx3|SINE|Alu	449359	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr18.57476951.+	chr18	57476951	57476952	+	0	NA	Intergenic	AluSz|SINE|Alu	-90241	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
chr1.114299553.-	chr1	114299553	114299554	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2224	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr6.152958038.-	chr6	152958038	152958039	-	0	NA	promoter-TSS (NM_033071)	promoter-TSS (NM_033071)	52	NM_033071	23345	Hs.12967	NM_033071	ENSG00000131018	SYNE1	8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2	"spectrin repeat containing, nuclear envelope 1"	protein-coding
chr15.90792665.+	chr15	90792665	90792666	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-99	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr5.159429710.-	chr5	159429710	159429711	-	0	NA	Intergenic	AluSz|SINE|Alu	6470	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr2.905947.+	chr2	905947	905948	+	0	NA	Intergenic	Intergenic	-40607	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr16.51183914.-	chr16	51183914	51183915	-	0	NA	"intron (NM_002968, intron 1 of 2)"	CpG	-594	NM_001127892	6299	Hs.135787	NM_001127892	ENSG00000103449	SALL1	HSAL1|Sal-1|TBS|ZNF794	sal-like 1 (Drosophila)	protein-coding
chr1.53335618.+	chr1	53335618	53335619	+	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	27435	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr4.52917704.-	chr4	52917704	52917705	-	0	NA	"5' UTR (NM_145263, exon 1 of 13)"	"5' UTR (NM_145263, exon 1 of 13)"	-111	NM_145263	132671	Hs.527090	NM_145263	ENSG00000163071	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
chr19.36379942.+	chr19	36379942	36379943	+	0	NA	"intron (NM_139239, intron 11 of 11)"	AluSx|SINE|Alu	11610	NM_139239	84807	Hs.466531	NM_139239	ENSG00000167604	NFKBID	IkappaBNS|TA-NFKBH	"nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta"	protein-coding
chr17.21825593.+	chr17	21825593	21825594	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	223	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr17.6475755.-	chr17	6475755	6475756	-	0	NA	Intergenic	AluSz|SINE|Alu	15878	NM_031220	83394	Hs.183983	NM_001165966	ENSG00000091622	PITPNM3	CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
chr21.43916748.+	chr21	43916748	43916749	+	0	NA	promoter-TSS (NM_080860)	promoter-TSS (NM_080860)	-347	NM_080860	89765	Hs.661069	NM_080860	ENSG00000160188	RSPH1	RSP44|RSPH10A|TSA2|TSGA2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding
chr19.49462852.+	chr19	49462852	49462853	+	0	NA	"intron (NM_138761, intron 4 of 5)"	AluSq2|SINE|Alu	4735	NM_138764	581	Hs.624291	NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2-associated X protein	protein-coding
chr6.149638370.-	chr6	149638370	149638371	-	0	NA	Intergenic	CpG	1066	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr3.47744682.-	chr3	47744682	47744683	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78723	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr3.46792289.+	chr3	46792289	46792290	+	0	NA	Intergenic	CpG	-6044	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr18.41408434.+	chr18	41408434	41408435	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550819	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr1.50571863.+	chr1	50571863	50571864	+	0	NA	promoter-TSS (NM_001144775)	promoter-TSS (NM_001144775)	-101	NM_001144775	1996	Hs.213050	NM_001144774	ENSG00000162374	ELAVL4	HUD|PNEM	"ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4"	protein-coding
chr12.110715031.+	chr12	110715031	110715032	+	0	NA	Intergenic	AluSg|SINE|Alu	-4001	NM_001681	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	"ATPase, Ca++ transporting, cardiac muscle, slow twitch 2"	protein-coding
chr17.12456672.-	chr17	12456672	12456673	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3387	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr2.71559424.+	chr2	71559424	71559425	+	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	539	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr17.48133424.+	chr17	48133424	48133425	+	0	NA	promoter-TSS (NM_005501)	promoter-TSS (NM_005501)	84	NM_002204	3675	Hs.265829	NM_002204	ENSG00000005884	ITGA3	CD49C|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a	"integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)"	protein-coding
chrX.53111615.+	chrX	53111615	53111616	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	73	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.113553906.-	chr12	113553906	113553907	-	0	NA	"intron (NM_004658, intron 9 of 21)"	AluSz|SINE|Alu	-19653	NM_001193521	8437	Hs.528693	NM_001193520	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1 (GAP1 like)	protein-coding
chr6.1377722.-	chr6	1377722	1377723	-	0	NA	Intergenic	AluSg|SINE|Alu	12347	NM_001452	2295	Hs.484423	NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
chr8.86574378.+	chr8	86574378	86574379	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	364	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr12.32064885.-	chr12	32064885	32064886	-	0	NA	Intergenic	AluY|SINE|Alu	47468	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr1.6578141.-	chr1	6578141	6578142	-	0	NA	"intron (NM_198681, intron 1 of 21)"	AluY|SINE|Alu	-1980	NM_198681	57449	Hs.619982	NM_001042663	ENSG00000171680	PLEKHG5	DSMA4|GEF720|Syx|Tech	"pleckstrin homology domain containing, family G (with RhoGef domain) member 5"	protein-coding
chr14.51521337.+	chr14	51521337	51521338	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	41085	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chrX.54371302.+	chrX	54371302	54371303	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13136	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr1.151195974.-	chr1	151195974	151195975	-	0	NA	"intron (NM_003557, intron 1 of 14)"	AluSc8|SINE|Alu	-24953	NM_001135638	8394	Hs.661888	NM_001135636	ENSG00000143398	PIP5K1A	-	"phosphatidylinositol-4-phosphate 5-kinase, type I, alpha"	protein-coding
chr2.10424805.-	chr2	10424805	10424806	-	0	NA	Intergenic	Intergenic	18225	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr2.230314749.+	chr2	230314749	230314750	+	0	NA	"intron (NM_139072, intron 7 of 12)"	AluSg|SINE|Alu	-178692	NM_001100818	55022	Hs.409352	NM_001100818	ENSG00000153823	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
chr18.46969358.-	chr18	46969358	46969359	-	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	-17721	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr2.221058165.-	chr2	221058165	221058166	-	0	NA	Intergenic	MER52A|LTR|ERV1	286879	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr7.1474630.+	chr7	1474630	1474631	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24479	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr1.33389838.-	chr1	33389838	33389839	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	22885	NM_033504	113452	Hs.534521	NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
chr15.75701821.-	chr15	75701821	75701822	-	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	40853	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr1.39113318.-	chr1	39113318	39113319	-	0	NA	Intergenic	SVA_D|Other|Other	-212177	NM_022157	64121	Hs.532461	NM_001271851		RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
chr6.168352154.+	chr6	168352154	168352155	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25465	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr12.105724421.-	chr12	105724421	105724422	-	0	NA	promoter-TSS (NM_001145199)	promoter-TSS (NM_001145199)	-7	NM_001145199	387882	Hs.368938	NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
chr10.121799454.+	chr10	121799454	121799455	+	0	NA	Intergenic	AluSz6|SINE|Alu	81429	NR_039830	100616322		NR_039830	ENSG00000265370	MIR4682	-	microRNA 4682	miscRNA
chr4.16228631.-	chr4	16228631	16228632	-	0	NA	promoter-TSS (NM_153365)	promoter-TSS (NM_153365)	-345	NR_027697	202020	Hs.445315	NM_152684	ENSG00000263327	TAPT1-AS1	-	TAPT1 antisense RNA 1 (head to head)	miscRNA
chr15.93372471.+	chr15	93372471	93372472	+	0	NA	Intergenic	AluSg|SINE|Alu	33757	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr11.118862312.-	chr11	118862312	118862313	-	0	NA	Intergenic	SVA_B|Other|Other	6540	NM_198489	338657	Hs.534613	NM_198489	ENSG00000186166	CCDC84	-	coiled-coil domain containing 84	protein-coding
chr19.21734814.-	chr19	21734814	21734815	-	0	NA	Intergenic	SVA_D|Other|Other	-46377	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr1.25568265.-	chr1	25568265	25568266	-	0	NA	TTS (NM_020317)	TTS (NM_020317)	-5720	NM_020317	57035	Hs.695168	NM_207035	ENSG00000117616	C1orf63	DJ465N24.2.1|NPD014|RP3-465N24.4	chromosome 1 open reading frame 63	protein-coding
chr17.26550594.+	chr17	26550594	26550595	+	0	NA	Intergenic	SVA_F|Other|Other	-2995	NR_003064	23615	Hs.157195	NR_003064	ENSG00000237575	PYY2	-	"peptide YY, 2 (pseudogene)"	pseudo
chr22.22550469.-	chr22	22550469	22550470	-	0	NA	Intergenic	Intergenic	48731	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr22.38949060.+	chr22	38949060	38949061	+	0	NA	"intron (NM_007068, intron 6 of 13)"	AluSx1|SINE|Alu	17129	NM_007068	11144	Hs.339396	NM_007068	ENSG00000100206	DMC1	DMC1H|HsLim15|LIM15|dJ199H16.1	"DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)"	protein-coding
chr16.3733104.-	chr16	3733104	3733105	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30164	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr7.1542254.+	chr7	1542254	1542255	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1764	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr19.41641937.+	chr19	41641937	41641938	+	0	NA	Intergenic	CpG	21584	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr10.70337078.+	chr10	70337078	70337079	+	0	NA	"intron (NM_030625, intron 2 of 11)"	AluSx|SINE|Alu	16961	NM_030625	80312	Hs.708977	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
chr16.544864.-	chr16	544864	544865	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20014	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr1.182583559.-	chr1	182583559	182583560	-	0	NA	promoter-TSS (NR_036490)	promoter-TSS (NR_036490)	716	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LOC284648	-	uncharacterized LOC284648	miscRNA
chr13.111268325.-	chr13	111268325	111268326	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-394	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr7.821269.-	chr7	821269	821270	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33925	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr14.23706378.+	chr14	23706378	23706379	+	0	NA	Intergenic	AluSz|SINE|Alu	48931	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr1.145506619.-	chr1	145506619	145506620	-	0	NA	promoter-TSS (NM_005105)	promoter-TSS (NM_005105)	938	NM_005105	9939	Hs.591455	NM_005105		RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
chr1.55505936.-	chr1	55505936	55505937	-	0	NA	"intron (NM_174936, intron 1 of 11)"	CpG	-787	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr10.90778647.-	chr10	90778647	90778648	-	0	NA	Intergenic	LTR12C|LTR|ERV1	25915	NR_028371	100302740	Hs.244139	NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	miscRNA
chr19.34623427.+	chr19	34623427	34623428	+	0	NA	Intergenic	SVA_D|Other|Other	-39925	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr13.24884179.-	chr13	24884179	24884180	-	0	NA	"intron (NM_178540, intron 1 of 3)"	AluSg7|SINE|Alu	-463	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr11.100596528.-	chr11	100596528	100596529	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38121	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr11.1122299.-	chr11	1122299	1122300	-	0	NA	Intergenic	Intergenic	-47424	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chrM.4449.-	chrM	4449	4450	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.66500830.+	chr9	66500830	66500831	+	0	NA	"non-coding (NR_024496, exon 2 of 2)"	"non-coding (NR_024496, exon 2 of 2)"	6561	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr13.21872275.+	chr13	21872275	21872276	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	11	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr19.1252693.-	chr19	1252693	1252694	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4141	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr22.50959134.+	chr22	50959134	50959135	+	0	NA	TTS (NM_014551)	TTS (NM_014551)	4899	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr4.513563.+	chr4	513563	513564	+	0	NA	"intron (NM_001127178, intron 6 of 12)"	"intron (NM_001127178, intron 6 of 12)"	20574	NM_001127178	54872	Hs.7099	NM_001127178	ENSG00000174227	PIGG	GPI7|LAS21|PRO4405|RLGS1930	"phosphatidylinositol glycan anchor biosynthesis, class G"	protein-coding
chr9.34329588.-	chr9	34329588	34329589	-	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-84	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr6.43016767.+	chr6	43016767	43016768	+	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	4916	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr19.23474371.+	chr19	23474371	23474372	+	0	NA	Intergenic	AluSx|SINE|Alu	-41199	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr18.1924551.+	chr18	1924551	1924552	+	0	NA	Intergenic	AluSp|SINE|Alu	-564921	NR_023926	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	miscRNA
chr11.86869699.+	chr11	86869699	86869700	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	120813	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr2.101214240.-	chr2	101214240	101214241	-	0	NA	Intergenic	MER8|DNA|TcMar-Tigger	-34822	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr20.61471701.-	chr20	61471701	61471702	-	0	NA	TTS (NM_006602)	TTS (NM_006602)	4775	NM_080750	100132911	Hs.126248	NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1|dJ885L7.5	"DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1"	protein-coding
chr3.164119734.-	chr3	164119734	164119735	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676549	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr20.20433231.-	chr20	20433231	20433232	-	0	NA	"intron (NM_020343, intron 37 of 39)"	CpG	-84466	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	insulinoma-associated 1	protein-coding
chr16.31932500.-	chr16	31932500	31932501	-	0	NA	Intergenic	AluY|SINE|Alu	-47421	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr19.31839863.+	chr19	31839863	31839864	+	0	NA	"intron (NM_020856, intron 1 of 1)"	CpG	327	NM_020856	57616	Hs.278436	NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
chr9.28773119.-	chr9	28773119	28773120	-	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	53816	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr1.55505945.-	chr1	55505945	55505946	-	0	NA	"intron (NM_174936, intron 1 of 11)"	CpG	-796	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr14.102109505.-	chr14	102109505	102109506	-	0	NA	Intergenic	AluY|SINE|Alu	-81817	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr14.80915477.-	chr14	80915477	80915478	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218080	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr2.242512515.-	chr2	242512515	242512516	-	0	NA	"3' UTR (NM_032515, exon 5 of 5)"	"3' UTR (NM_032515, exon 5 of 5)"	13957	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr17.1133485.+	chr17	1133485	1133486	+	0	NA	Intergenic	AluJb|SINE|Alu	-40373	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr9.138437752.+	chr9	138437752	138437753	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-233	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr2.241363403.+	chr2	241363403	241363404	+	0	NA	Intergenic	Intergenic	-11712	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr6.170055433.+	chr6	170055433	170055434	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46726	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr4.3026442.-	chr4	3026442	3026443	-	0	NA	"intron (NM_182982, intron 10 of 15)"	AluSz|SINE|Alu	-49799	NR_045414	100750326	Hs.575112	NR_045414		HTT-AS1	HTTAS	HTT antisense RNA 1 (head to head)	miscRNA
chr7.158497987.-	chr7	158497987	158497988	-	0	NA	promoter-TSS (NM_017760)	promoter-TSS (NM_017760)	467	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr6.333829.+	chr6	333829	333830	+	0	NA	"intron (NM_020185, intron 3 of 7)"	"intron (NM_020185, intron 3 of 7)"	41728	NM_020185	56940	Hs.29106	NM_020185		DUSP22	JKAP|JSP1|LMWDSP2|MKPX|VHX	dual specificity phosphatase 22	protein-coding
chr18.11086433.+	chr18	11086433	11086434	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62328	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr2.10130557.+	chr2	10130557	10130558	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSx1|SINE|Alu	38765	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr6.2221738.-	chr6	2221738	2221739	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24130	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr3.102974032.-	chr3	102974032	102974033	-	0	NA	Intergenic	SVA_D|Other|Other	-820173	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr3.126268876.-	chr3	126268876	126268877	-	0	NA	"exon (NM_152533, exon 4 of 4)"	"exon (NM_152533, exon 4 of 4)"	-8882	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr12.49856914.-	chr12	49856914	49856915	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73957	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr16.30960881.-	chr16	30960881	30960882	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-476	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr9.16766049.-	chr9	16766049	16766050	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104737	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr7.56143804.-	chr7	56143804	56143805	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11887	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr17.38406645.-	chr17	38406645	38406646	-	0	NA	"intron (NM_133264, intron 1 of 7)"	AluY|SINE|Alu	-31071	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr6.42510202.-	chr6	42510202	42510203	-	0	NA	Intergenic	AluY|SINE|Alu	21558	NM_015255	23304	Hs.529925	NM_001184801	ENSG00000024048	UBR2	C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chr14.51521522.+	chr14	51521522	51521523	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	40900	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr13.114899251.+	chr13	114899251	114899252	+	0	NA	Intergenic	Intergenic	-1156	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr1.38342278.+	chr1	38342278	38342279	+	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	-16986	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr5.141558659.-	chr5	141558659	141558660	-	0	NA	Intergenic	AluSg|SINE|Alu	-70335	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr21.45243653.-	chr21	45243653	45243654	-	0	NA	Intergenic	Intergenic	11205	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr6.19215602.+	chr6	19215602	19215603	+	0	NA	Intergenic	AluY|SINE|Alu	-621999	NM_001546	3400	Hs.731649	NM_001546		ID4	IDB4|bHLHb27	"inhibitor of DNA binding 4, dominant negative helix-loop-helix protein"	protein-coding
chr15.63892667.+	chr15	63892667	63892668	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	359	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr10.21843636.+	chr10	21843636	21843637	+	0	NA	"intron (NM_001195627, intron 4 of 4)"	AluSc|SINE|Alu	20062	NM_001195626	8028	Hs.30385	NM_001195626	ENSG00000078403	MLLT10	AF10	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10"	protein-coding
chr4.26862243.+	chr4	26862243	26862244	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-70	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr9.139071871.+	chr9	139071871	139071872	+	0	NA	Intergenic	Intergenic	23133	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr1.41916713.-	chr1	41916713	41916714	-	0	NA	Intergenic	Intergenic	-33631	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr12.120960904.-	chr12	120960904	120960905	-	0	NA	"intron (NM_032314, intron 1 of 6)"	AluY|SINE|Alu	-6060	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr16.632143.+	chr16	632143	632144	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7214	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr2.48010429.+	chr2	48010429	48010430	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	208	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr16.2391542.+	chr16	2391542	2391543	+	0	NA	promoter-TSS (NM_001089)	promoter-TSS (NM_001089)	619	NR_003574	650655	Hs.376281	NR_003574	ENSG00000238098	ABCA17P	ABCA17	"ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene"	pseudo
chr3.52981384.-	chr3	52981384	52981385	-	0	NA	"intron (NM_016329, intron 3 of 20)"	AluY|SINE|Alu	49787	NM_198563	375346	Hs.744189	NM_198563	ENSG00000213533	TMEM110	-	transmembrane protein 110	protein-coding
chr4.160861093.-	chr4	160861093	160861094	-	0	NA	Intergenic	SVA_F|Other|Other	-672095	NM_014247	9693	Hs.113912	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chr11.2213907.+	chr11	2213907	2213908	+	0	NA	Intergenic	Intergenic	19614	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr16.632132.-	chr16	632132	632133	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7225	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr3.72107853.+	chr3	72107853	72107854	+	0	NA	Intergenic	Intergenic	-92555	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	miscRNA
chr17.57884693.+	chr17	57884693	57884694	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33934	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr21.45566125.+	chr21	45566125	45566126	+	0	NA	TTS (NM_198155)	TTS (NM_198155)	12631	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr6.114181022.+	chr6	114181022	114181023	+	0	NA	"exon (NM_002356, exon 2 of 2)"	"exon (NM_002356, exon 2 of 2)"	2495	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr13.23134076.-	chr13	23134076	23134077	-	0	NA	Intergenic	AluY|SINE|Alu	-338244	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	"brain abundant, membrane attached signal protein 1 pseudogene 1"	pseudo
chr19.14156283.+	chr19	14156283	14156284	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13688	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr3.28617575.+	chr3	28617575	28617576	+	0	NA	"intron (NR_038840, intron 1 of 4)"	CpG	806	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr16.2033694.+	chr16	2033694	2033695	+	0	NA	promoter-TSS (NM_005262)	promoter-TSS (NM_005262)	-456	NM_005262	2671	Hs.744156	NM_005262	ENSG00000127554	GFER	ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS	"growth factor, augmenter of liver regeneration"	protein-coding
chr7.3828922.+	chr7	3828922	3828923	+	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	-340395	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr4.989202.-	chr4	989202	989203	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1978	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr8.41583349.+	chr8	41583349	41583350	+	0	NA	"exon (NM_000037, exon 6 of 43)"	"exon (NM_000037, exon 6 of 43)"	-60545	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr16.75279102.-	chr16	75279102	75279103	-	0	NA	"intron (NM_001170715, intron 1 of 6)"	"intron (NM_001170715, intron 1 of 6)"	-3122	NM_001170719	9564	Hs.479747	NM_001170714	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
chr7.140400264.+	chr7	140400264	140400265	+	0	NA	"intron (NM_004546, intron 1 of 3)"	"intron (NM_004546, intron 1 of 3)"	-3387	NR_024454	100134713	Hs.743663	NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	miscRNA
chr3.22987499.+	chr3	22987499	22987500	+	0	NA	Intergenic	AluYk4|SINE|Alu	-257285	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr1.226350792.-	chr1	226350792	226350793	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23631	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr3.36421955.-	chr3	36421955	36421956	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	142	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr3.32863312.-	chr3	32863312	32863313	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3802	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr1.113287058.-	chr1	113287058	113287059	-	0	NA	Intergenic	CpG	-23869	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr17.74707083.+	chr17	74707083	74707084	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-27	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr5.27106603.+	chr5	27106603	27106604	+	0	NA	Intergenic	AluY|SINE|Alu	-67914	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	"cadherin 9, type 2 (T1-cadherin)"	protein-coding
chr7.56811339.-	chr7	56811339	56811340	-	0	NA	Intergenic	AluY|SINE|Alu	-138500	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr19.45678440.-	chr19	45678440	45678441	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3061	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr1.9517604.+	chr1	9517604	9517605	+	0	NA	Intergenic	AluJb|SINE|Alu	-81924	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr19.50803062.-	chr19	50803062	50803063	-	0	NA	"intron (NM_001145809, intron 39 of 42)"	AluSz|SINE|Alu	-29572	NM_004977	3748	Hs.467146	NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	"potassium voltage-gated channel, Shaw-related subfamily, member 3"	protein-coding
chr7.157234972.-	chr7	157234972	157234973	-	0	NA	Intergenic	CpG	-105261	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr3.15431331.+	chr3	15431331	15431332	+	0	NA	Intergenic	AluSp|SINE|Alu	37711	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr1.21714339.-	chr1	21714339	21714340	-	0	NA	Intergenic	SVA_F|Other|Other	42305	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chrX.132930106.-	chrX	132930106	132930107	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189567	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr11.68303168.+	chr11	68303168	68303169	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74982	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr8.67618048.+	chr8	67618048	67618049	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6605	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr6.168397412.-	chr6	168397412	168397413	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	19793	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr17.4810682.-	chr17	4810682	4810683	-	0	NA	Intergenic	AluY|SINE|Alu	4313	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	"cholinergic receptor, nicotinic, epsilon (muscle)"	protein-coding
chr12.31575317.-	chr12	31575317	31575318	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96158	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr20.32873729.+	chr20	32873729	32873730	+	0	NA	"intron (NM_000687, intron 8 of 9)"	AluY|SINE|Alu	17486	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr19.21728136.+	chr19	21728136	21728137	+	0	NA	Intergenic	AluYc|SINE|Alu	39699	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr19.38335697.+	chr19	38335697	38335698	+	0	NA	"intron (NR_040015, intron 2 of 5)"	AluSg|SINE|Alu	10139	NR_040015	100631378	Hs.726940	NR_040015	ENSG00000225868	LOC100631378	-	uncharacterized 100631378	miscRNA
chr8.98771772.-	chr8	98771772	98771773	-	0	NA	Intergenic	AluSq10|SINE|Alu	16037	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr19.13207610.+	chr19	13207610	13207611	+	0	NA	"3' UTR (NM_001271044, exon 10 of 10)"	"3' UTR (NM_001271044, exon 10 of 10)"	6364	NM_005583	4066	Hs.728534	NM_005583	ENSG00000104903	LYL1	bHLHa18	lymphoblastic leukemia derived sequence 1	protein-coding
chr14.105618914.+	chr14	105618914	105618915	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16247	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr2.39267425.+	chr2	39267425	39267426	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79940	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr6.158438954.+	chr6	158438954	158438955	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	874	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr15.75701804.-	chr15	75701804	75701805	-	0	NA	"intron (NM_001145357, intron 8 of 20)"	"intron (NM_001145357, intron 8 of 20)"	40836	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr4.26862256.-	chr4	26862256	26862257	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	57	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr7.157129496.+	chr7	157129496	157129497	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-214	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr5.612616.+	chr5	612616	612617	+	0	NA	"intron (NM_018140, intron 1 of 11)"	CpG	211	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72kDa	protein-coding
chr17.42869151.-	chr17	42869151	42869152	-	0	NA	Intergenic	AluY|SINE|Alu	-32583	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr15.41687832.-	chr15	41687832	41687833	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6826	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr8.133680835.+	chr8	133680835	133680836	+	0	NA	"intron (NR_073525, intron 1 of 12)"	AluY|SINE|Alu	7028	NR_073525	23639	Hs.591865	NM_012472	ENSG00000129295	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
chr5.1144378.+	chr5	1144378	1144379	+	0	NA	Intergenic	Intergenic	-32206	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr17.26336751.-	chr17	26336751	26336752	-	0	NA	Intergenic	AluSz|SINE|Alu	32937	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr8.43274649.-	chr8	43274649	43274650	-	0	NA	Intergenic	SVA_D|Other|Other	-127064	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chrM.6898.-	chrM	6898	6899	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.113871512.+	chr3	113871512	113871513	+	0	NA	"intron (NM_033663, intron 3 of 7)"	"intron (NM_033663, intron 3 of 7)"	26387	NM_033663	1814	Hs.121478	NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
chr19.16781106.-	chr19	16781106	16781107	-	0	NA	"intron (NM_024074, intron 1 of 5)"	AluSq|SINE|Alu	-9168	NM_024074	79041	Hs.436068	NM_024074		TMEM38A	TRIC-A|TRICA	transmembrane protein 38A	protein-coding
chr3.1144615.+	chr3	1144615	1144616	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9986	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr16.85371290.+	chr16	85371290	85371291	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-31359	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr19.36571207.+	chr19	36571207	36571208	+	0	NA	"intron (NM_173636, intron 9 of 31)"	AluY|SINE|Alu	25424	NM_001083961	284403	Hs.116244	NM_001083961	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
chr14.106359656.-	chr14	106359656	106359657	-	0	NA	Intergenic	Intergenic	24182	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr10.102826398.+	chr10	102826398	102826399	+	0	NA	Intergenic	CpG	5399	NM_030929	81621	Hs.632079	NM_030929		KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding
chr14.100998351.+	chr14	100998351	100998352	+	0	NA	Intergenic	Intergenic	36056	NM_001159531	57596	Hs.211751	NM_001159531	ENSG00000183092	BEGAIN	-	brain-enriched guanylate kinase-associated	protein-coding
chr11.31560742.-	chr11	31560742	31560743	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29445	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr19.45678479.-	chr19	45678479	45678480	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3022	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr19.35329817.-	chr19	35329817	35329818	-	0	NA	Intergenic	CpG	6044	NR_033982	400685	Hs.730118	NR_033982	ENSG00000267767	LOC400685	-	uncharacterized LOC400685	miscRNA
chr18.24748307.-	chr18	24748307	24748308	-	0	NA	"intron (NM_001256316, intron 1 of 4)"	AluY|SINE|Alu	-16995	NM_001256316	83539	Hs.706552	NM_001256316	ENSG00000154080	CHST9	GALNAC4ST-2	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chr9.117180335.+	chr9	117180335	117180336	+	0	NA	"intron (NM_001173425, intron 7 of 11)"	MIR3|SINE|MIR	-23650	NM_030767	80709	Hs.494895	NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
chr2.1166136.-	chr2	1166136	1166137	-	0	NA	"intron (NM_018968, intron 7 of 16)"	"intron (NM_018968, intron 7 of 16)"	-219582	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr11.72160509.+	chr11	72160509	72160510	+	0	NA	Intergenic	AluY|SINE|Alu	-14785	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chrX.21676563.+	chrX	21676563	21676564	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-115	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr16.90085563.-	chr16	90085563	90085564	-	0	NA	"intron (NM_001042610, intron 1 of 3)"	CpG	-374	NM_001042610	79007	Hs.301394	NM_001042610	ENSG00000003249	DBNDD1	-	dysbindin (dystrobrevin binding protein 1) domain containing 1	protein-coding
chr17.2731930.+	chr17	2731930	2731931	+	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	32198	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr7.1474530.-	chr7	1474530	1474531	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24579	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr3.169200417.+	chr3	169200417	169200418	+	0	NA	"intron (NM_004991, intron 1 of 16)"	AluY|SINE|Alu	181146	NM_001205194	2122	Hs.744090	NM_001105077	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3	MDS1 and EVI1 complex locus	protein-coding
chr1.236252107.+	chr1	236252107	236252108	+	0	NA	Intergenic	Intergenic	-23626	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr1.36611564.-	chr1	36611564	36611565	-	0	NA	"intron (NM_001270895, intron 1 of 4)"	AluY|SINE|Alu	-3551	NR_073098	27095	Hs.523131	NM_001270894	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
chr7.1710282.-	chr7	1710282	1710283	-	0	NA	Intergenic	CpG	38516	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr16.3229084.+	chr16	3229084	3229085	+	0	NA	Intergenic	AluSp|SINE|Alu	-25163	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr7.124427307.-	chr7	124427307	124427308	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3557	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr17.21825598.-	chr17	21825598	21825599	-	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	-228	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr17.3317547.-	chr17	3317547	3317548	-	0	NA	Intergenic	AluSc8|SINE|Alu	6315	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr14.106358760.-	chr14	106358760	106358761	-	0	NA	Intergenic	Intergenic	25078	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr17.42869156.-	chr17	42869156	42869157	-	0	NA	Intergenic	AluY|SINE|Alu	-32588	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr19.18180395.+	chr19	18180395	18180396	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17302	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr17.4724163.+	chr17	4724163	4724164	+	0	NA	"intron (NM_002663, intron 23 of 24)"	AluYf4|SINE|Alu	-12472	NM_170663	50488	Hs.443417	NM_001024937	ENSG00000141503	MINK1	B55|MAP4K6|MINK|YSK2|ZC3|hMINK|hMINKbeta	misshapen-like kinase 1	protein-coding
chr5.17032572.+	chr5	17032572	17032573	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-96187	NM_012334	4651	Hs.481720	NM_012334		MYO10	-	myosin X	protein-coding
chr6.168465525.+	chr6	168465525	168465526	+	0	NA	"intron (NM_001122841, intron 5 of 10)"	"intron (NM_001122841, intron 5 of 10)"	11007	NM_001122841	79981	Hs.266746	NM_001122841	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
chr8.98771765.-	chr8	98771765	98771766	-	0	NA	Intergenic	AluSq10|SINE|Alu	16044	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr3.49757506.-	chr3	49757506	49757507	-	0	NA	promoter-TSS (NM_198722)	promoter-TSS (NM_198722)	268	NM_198722	386724	Hs.567903	NM_198722	ENSG00000176020	AMIGO3	AMIGO-3	adhesion molecule with Ig-like domain 3	protein-coding
chr13.72441445.-	chr13	72441445	72441446	-	0	NA	promoter-TSS (NM_004392)	promoter-TSS (NM_004392)	115	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr21.47838703.-	chr21	47838703	47838704	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40159	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr8.25042083.+	chr8	25042083	25042084	+	0	NA	promoter-TSS (NM_024940)	promoter-TSS (NM_024940)	-204	NM_024940	80005	Hs.195403	NM_024940		DOCK5	-	dedicator of cytokinesis 5	protein-coding
chrX.133976883.-	chrX	133976883	133976884	-	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	-35660	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr18.33709939.-	chr18	33709939	33709940	-	0	NA	promoter-TSS (NM_012319)	promoter-TSS (NM_012319)	-102	NR_040110	55250	Hs.8739	NM_001242875	ENSG00000134759	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
chr2.171069901.-	chr2	171069901	171069902	-	0	NA	"intron (NR_045684, intron 3 of 34)"	LTR2B|LTR|ERV1	-35246	NR_045683	140469	Hs.671900	NM_001171642	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
chr1.36675727.-	chr1	36675727	36675728	-	0	NA	Intergenic	AluSc8|SINE|Alu	14290	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
chr7.104040171.+	chr7	104040171	104040172	+	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	71067	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr3.22843212.-	chr3	22843212	22843213	-	0	NA	Intergenic	L1PA2|LINE|L1	401572	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr3.164851995.+	chr3	164851995	164851996	+	0	NA	Intergenic	AluY|SINE|Alu	-55712	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr2.101924971.-	chr2	101924971	101924972	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-207	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr16.81282943.+	chr16	81282943	81282944	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10647	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr3.102973976.+	chr3	102973976	102973977	+	0	NA	Intergenic	SVA_D|Other|Other	820117	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr3.31573981.+	chr3	31573981	31573982	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-510	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr2.38191069.-	chr2	38191069	38191070	-	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	-13473	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr2.101924998.+	chr2	101924998	101924999	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	180	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr6.34857462.-	chr6	34857462	34857463	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-424	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr13.81676510.-	chr13	81676510	81676511	-	0	NA	Intergenic	SVA_D|Other|Other	761424	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr1.248394306.-	chr1	248394306	248394307	-	0	NA	Intergenic	AluSc8|SINE|Alu	7925	NM_017504	26245	Hs.381309	NM_017504	ENSG00000171180	OR2M4	HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100	"olfactory receptor, family 2, subfamily M, member 4"	protein-coding
chr19.35418185.-	chr19	35418185	35418186	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-378	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr2.38825107.-	chr2	38825107	38825108	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5071	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr18.20879378.+	chr18	20879378	20879379	+	0	NA	"intron (NM_032933, intron 14 of 14)"	L3|LINE|CR1	138547	NM_032933	85019	Hs.137562	NM_032933	ENSG00000134490	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
chr12.30327146.+	chr12	30327146	30327147	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389454	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr22.18131970.+	chr22	18131970	18131971	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6458	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr16.85371267.+	chr16	85371267	85371268	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-31336	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr17.34101272.+	chr17	34101272	34101273	+	0	NA	"intron (NM_024302, intron 3 of 7)"	"intron (NM_024302, intron 3 of 7)"	13356	NM_145272	146853	Hs.127194	NM_145272	ENSG00000154768	C17orf50	-	chromosome 17 open reading frame 50	protein-coding
chr22.38336371.+	chr22	38336371	38336372	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13283	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr2.234762651.-	chr2	234762651	234762652	-	0	NA	"intron (NM_018410, intron 1 of 8)"	CpG	-561	NM_018410	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
chr8.67618022.+	chr8	67618022	67618023	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6631	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr15.20494042.+	chr15	20494042	20494043	+	0	NA	"intron (NR_038836, intron 4 of 5)"	AluSx|SINE|Alu	6045	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr7.42276890.+	chr7	42276890	42276891	+	0	NA	promoter-TSS (NM_000168)	promoter-TSS (NM_000168)	-272	NM_000168	2737	Hs.21509	NM_000168	ENSG00000106571	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
chr19.13229371.+	chr19	13229371	13229372	+	0	NA	"intron (NM_052876, intron 1 of 5)"	CpG	269	NM_052876	112939	Hs.531614	NM_052876	ENSG00000160877	NACC1	BEND8|BTBD14B|BTBD30|NAC-1|NAC1	"nucleus accumbens associated 1, BEN and BTB (POZ) domain containing"	protein-coding
chr10.5823485.-	chr10	5823485	5823486	-	0	NA	"intron (NM_001494, intron 6 of 10)"	AluYk4|SINE|Alu	-32027	NM_001115156	2665	Hs.299055	NM_001115156	ENSG00000057608	GDI2	RABGDIB	GDP dissociation inhibitor 2	protein-coding
chr4.103422410.+	chr4	103422410	103422411	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-76	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr3.31574336.-	chr3	31574336	31574337	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	155	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr18.29729788.-	chr18	29729788	29729789	-	0	NA	Intergenic	AluSp|SINE|Alu	40199	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr5.1067316.+	chr5	1067316	1067317	+	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	-4227	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr19.44489477.-	chr19	44489477	44489478	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1155	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr5.3188292.+	chr5	3188292	3188293	+	0	NA	Intergenic	CpG	347916	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr18.35658762.+	chr18	35658762	35658763	+	0	NA	Intergenic	AluY|SINE|Alu	421664	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	miscRNA
chr4.185174251.-	chr4	185174251	185174252	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35137	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr22.49833065.-	chr22	49833065	49833066	-	0	NA	Intergenic	AluSx|SINE|Alu	-218125	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr8.143373417.-	chr8	143373417	143373418	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93700	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr3.46792399.-	chr3	46792399	46792400	-	0	NA	Intergenic	CpG	6154	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr20.31976690.+	chr20	31976690	31976691	+	0	NA	"intron (NM_016082, intron 5 of 13)"	SVA_C|Other|Other	12647	NM_016082	51654	Hs.435952	NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CDK5RAP1.3|CDK5RAP1.4|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
chr19.1252680.-	chr19	1252680	1252681	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4128	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr13.111268065.-	chr13	111268065	111268066	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-134	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr14.105736161.-	chr14	105736161	105736162	-	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	20420	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr17.45349561.-	chr17	45349561	45349562	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18353	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr13.77954575.+	chr13	77954575	77954576	+	0	NA	Intergenic	AluSc|SINE|Alu	-53398	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr2.39384034.-	chr2	39384034	39384035	-	0	NA	Intergenic	AluSx1|SINE|Alu	36430	NM_005633	6654	Hs.732497	NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4	son of sevenless homolog 1 (Drosophila)	protein-coding
chr9.140474093.-	chr9	140474093	140474094	-	0	NA	promoter-TSS (NM_138778)	promoter-TSS (NM_138778)	706	NM_138778	92715	Hs.292570	NM_138778	ENSG00000148399	WDR85	C9orf112|RP11-48C7.3|RRT2	WD repeat domain 85	protein-coding
chr4.113704353.+	chr4	113704353	113704354	+	0	NA	Intergenic	AluSg|SINE|Alu	-34886	NM_001127493	287	Hs.620557	NM_001127493	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	"ankyrin 2, neuronal"	protein-coding
chrX.122993610.-	chrX	122993610	122993611	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	52	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr10.120937567.+	chr10	120937567	120937568	+	0	NA	"intron (NM_014098, intron 1 of 6)"	AluJb|SINE|Alu	778	NM_014098	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr1.10727919.+	chr1	10727919	10727920	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128814	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr3.176995007.-	chr3	176995007	176995008	-	0	NA	Intergenic	AluSc8|SINE|Alu	79959	NM_024665	79718	Hs.744001	NM_024665		TBL1XR1	C21|DC42|IRA1|TBLR1	transducin (beta)-like 1 X-linked receptor 1	protein-coding
chr6.163752470.-	chr6	163752470	163752471	-	0	NA	Intergenic	Intergenic	6965	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr16.57898549.+	chr16	57898549	57898550	+	0	NA	Intergenic	AluSg|SINE|Alu	-62110	NM_005550	3801	Hs.23131	NM_001130099	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
chr22.49826881.-	chr22	49826881	49826882	-	0	NA	Intergenic	Intergenic	-224309	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr9.16748562.-	chr9	16748562	16748563	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluSx1|SINE|Alu	-122224	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr11.34488049.+	chr11	34488049	34488050	+	0	NA	"intron (NM_001752, intron 10 of 12)"	AluY|SINE|Alu	27577	NM_001752	847	Hs.502302	NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
chr1.6132068.+	chr1	6132068	6132069	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25894	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chrX.43991612.-	chrX	43991612	43991613	-	0	NA	Intergenic	AluY|SINE|Alu	158691	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
chr2.121244089.-	chr2	121244089	121244090	-	0	NA	Intergenic	Intergenic	20164	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr19.9311206.-	chr19	9311206	9311207	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14341	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr12.53369459.-	chr12	53369459	53369460	-	0	NA	Intergenic	Intergenic	25809	NM_001256293	3856	Hs.708445	NM_001256282	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
chr17.40464884.+	chr17	40464884	40464885	+	0	NA	TTS (NM_213662)	TTS (NM_213662)	25319	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr11.67351067.-	chr11	67351067	67351068	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-1	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr6.165953189.-	chr6	165953189	165953190	-	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	-122399	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chrX.112187625.-	chrX	112187625	112187626	-	0	NA	Intergenic	AluY|SINE|Alu	103582	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr14.102912027.+	chr14	102912027	102912028	+	0	NA	"intron (NM_001172631, intron 12 of 16)"	"intron (NM_001172631, intron 12 of 16)"	64101	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr3.42642472.-	chr3	42642472	42642473	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-100	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr21.45243647.+	chr21	45243647	45243648	+	0	NA	Intergenic	Intergenic	-11199	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr2.43216919.+	chr2	43216919	43216920	+	0	NA	Intergenic	L1PA3|LINE|L1	-197168	NM_012205	23498	Hs.368805	NM_012205	ENSG00000162882	HAAO	3-HAO|HAO	"3-hydroxyanthranilate 3,4-dioxygenase"	protein-coding
chrX.39680232.-	chrX	39680232	39680233	-	0	NA	Intergenic	CpG	-276487	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr2.1554803.-	chr2	1554803	1554804	-	0	NA	Intergenic	Intergenic	-136623	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr11.67351058.+	chr11	67351058	67351059	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-8	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr3.47865627.-	chr3	47865627	47865628	-	0	NA	"intron (NM_014966, intron 5 of 22)"	AluSx|SINE|Alu	-21228	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|RETCOR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding
chr17.35241110.+	chr17	35241110	35241111	+	0	NA	Intergenic	AluSx1|SINE|Alu	-53662	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr7.1507444.-	chr7	1507444	1507445	-	0	NA	Intergenic	Intergenic	8335	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr1.21893036.+	chr1	21893036	21893037	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57178	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr17.28675233.-	chr17	28675233	28675234	-	0	NA	Intergenic	AluY|SINE|Alu	14168	NM_206832	388364	Hs.371005	NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
chr2.213546664.+	chr2	213546664	213546665	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143312	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr1.117312746.-	chr1	117312746	117312747	-	0	NA	TTS (NM_001767)	TTS (NM_001767)	-15660	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr16.4537746.-	chr16	4537746	4537747	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8113	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr2.116681959.+	chr2	116681959	116681960	+	0	NA	Intergenic	AluSq2|SINE|Alu	762275	NM_001004360	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr10.133203413.+	chr10	133203413	133203414	+	0	NA	Intergenic	Intergenic	-93429	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr12.118079846.+	chr12	118079846	118079847	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280239	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr2.121425241.-	chr2	121425241	121425242	-	0	NA	Intergenic	AluY|SINE|Alu	129626	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr3.53118174.-	chr3	53118174	53118175	-	0	NA	Intergenic	Intergenic	38085	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr2.87017070.+	chr2	87017070	87017071	+	0	NA	"intron (NM_171827, intron 2 of 4)"	CpG-15196	1767	NM_171827	925	Hs.85258	NM_001145873	ENSG00000153563	CD8A	CD8|Leu2|MAL|p32	CD8a molecule	protein-coding
chr17.8625909.+	chr17	8625909	8625910	+	0	NA	Intergenic	AluY|SINE|Alu	22245	NM_144681	146849	Hs.121438	NM_001158261	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
chr12.52432009.+	chr12	52432009	52432010	+	0	NA	"intron (NM_001202233, intron 1 of 7)"	AluSg|SINE|Alu	-13177	NM_173157	3164	Hs.670088	NM_001202233	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	"nuclear receptor subfamily 4, group A, member 1"	protein-coding
chr1.39589374.+	chr1	39589374	39589375	+	0	NA	"intron (NM_012090, intron 3 of 94)"	AluJb|SINE|Alu	42285	NM_012090	23499	Hs.692278	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
chr3.128194306.+	chr3	128194306	128194307	+	0	NA	Intergenic	Intergenic	-8215	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr13.112547823.+	chr13	112547823	112547824	+	0	NA	Intergenic	CpG	-174090	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr7.5574476.+	chr7	5574476	5574477	+	0	NA	Intergenic	AluJb|SINE|Alu	-4244	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr5.141558669.-	chr5	141558669	141558670	-	0	NA	Intergenic	AluSg|SINE|Alu	-70345	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr10.135104759.+	chr10	135104759	135104760	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14352	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr18.55711264.+	chr18	55711264	55711265	+	0	NA	promoter-TSS (NM_015277)	promoter-TSS (NM_015277)	-346	NM_015277	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr20.14431913.+	chr20	14431913	14431914	+	0	NA	"intron (NM_080676, intron 3 of 16)"	AluSx|SINE|Alu	-113600	NM_013281	23767	Hs.41296	NM_013281	ENSG00000125848	FLRT3	-	fibronectin leucine rich transmembrane protein 3	protein-coding
chr9.130734247.-	chr9	130734247	130734248	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8565	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr1.247094643.-	chr1	247094643	247094644	-	0	NA	promoter-TSS (NM_015446)	promoter-TSS (NM_015446)	-83	NM_015446	25909	Hs.300887	NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|TMBS62	AT hook containing transcription factor 1	protein-coding
chr13.108435256.-	chr13	108435256	108435257	-	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	-84204	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr14.21741113.-	chr14	21741113	21741114	-	0	NA	Intergenic	AluSx1|SINE|Alu	3475	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr16.181423.+	chr16	181423	181424	+	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	7274	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr8.23131089.+	chr8	23131089	23131090	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14523	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr16.1228108.+	chr16	1228108	1228109	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24867	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr1.113275293.-	chr1	113275293	113275294	-	0	NA	Intergenic	AluY|SINE|Alu	-12104	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr22.44845315.+	chr22	44845315	44845316	+	0	NA	Intergenic	Intergenic	48690	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr17.37768973.+	chr17	37768973	37768974	+	0	NA	Intergenic	Intergenic	-4798	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr17.66332140.-	chr17	66332140	66332141	-	0	NA	"intron (NM_001267727, intron 2 of 11)"	AluSx1|SINE|Alu	-44504	NM_001267727	22901	Hs.437249	NM_001267727		ARSG	-	arylsulfatase G	protein-coding
chr15.69707073.+	chr15	69707073	69707074	+	0	NA	"intron (NM_138555, intron 1 of 22)"	CpG	446	NM_004856	9493	Hs.270845	NM_004856	ENSG00000137807	KIF23	CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
chr2.58077691.+	chr2	58077691	58077692	+	0	NA	Intergenic	Intergenic	-196086	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr1.158012587.+	chr1	158012587	158012588	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49524	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr4.118368476.+	chr4	118368476	118368477	+	0	NA	Intergenic	AluY|SINE|Alu	-361740	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr19.7123152.-	chr19	7123152	7123153	-	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	-53681	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr12.57177793.+	chr12	57177793	57177794	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20685	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr9.138959141.+	chr9	138959141	138959142	+	0	NA	"intron (NM_144653, intron 1 of 5)"	L1MB8|LINE|L1	27990	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr22.51010949.+	chr22	51010949	51010950	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5557	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr11.9503849.+	chr11	9503849	9503850	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21337	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr20.62108057.+	chr20	62108057	62108058	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4064	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr9.12352937.+	chr9	12352937	12352938	+	0	NA	Intergenic	Intergenic	-340449	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr6.123681029.+	chr6	123681029	123681030	+	0	NA	"intron (NM_001251987, intron 20 of 20)"	AluY|SINE|Alu	277209	NM_001256020	10345	Hs.144744	NM_001251987	ENSG00000186439	TRDN	TDN|TRISK	triadin	protein-coding
chr20.35153544.-	chr20	35153544	35153545	-	0	NA	"intron (NM_183006, intron 5 of 6)"	AluY|SINE|Alu	16343	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr9.66837882.-	chr9	66837882	66837883	-	0	NA	Intergenic	Intergenic	-194190	NR_046175	286297	Hs.645503	NR_046175	ENSG00000182021	LOC286297	-	uncharacterized LOC286297	miscRNA
chr16.68573276.+	chr16	68573276	68573277	+	0	NA	promoter-TSS (NM_133458)	promoter-TSS (NM_133458)	-385	NM_133458	146198	Hs.709017	NM_133458	ENSG00000184939	ZFP90	NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
chr11.64120556.-	chr11	64120556	64120557	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6069	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr2.71562019.-	chr2	71562019	71562020	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3134	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr22.38531083.+	chr22	38531083	38531084	+	0	NA	"exon (NM_001199562, exon 6 of 16)"	"exon (NM_001199562, exon 6 of 16)"	-24407	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr1.240947696.-	chr1	240947696	240947697	-	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	172234	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr5.78513850.+	chr5	78513850	78513851	+	0	NA	Intergenic	AluSx|SINE|Alu	-18075	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHDC1L3	"junction mediating and regulatory protein, p53 cofactor"	protein-coding
chr3.63671971.-	chr3	63671971	63671972	-	0	NA	Intergenic	AluSx1|SINE|Alu	-33627	NM_001080537	132203	Hs.130704	NM_001080537		SNTN	S100A1L|S100AL|sentan	"sentan, cilia apical structure protein"	protein-coding
chr13.111159621.-	chr13	111159621	111159622	-	0	NA	"intron (NM_001846, intron 46 of 47)"	"intron (NM_001846, intron 46 of 47)"	-905	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	miscRNA
chr16.31932507.+	chr16	31932507	31932508	+	0	NA	Intergenic	AluY|SINE|Alu	47428	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr1.54775679.+	chr1	54775679	54775680	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96300	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr20.31070755.+	chr20	31070755	31070756	+	0	NA	"intron (NM_001256798, intron 4 of 10)"	CpG	630	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr18.44499423.+	chr18	44499423	44499424	+	0	NA	Intergenic	AluSp|SINE|Alu	-1928	NM_004671	9063	Hs.657844	NM_004671		PIAS2	ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4	"protein inhibitor of activated STAT, 2"	protein-coding
chr16.81156375.+	chr16	81156375	81156376	+	0	NA	"intron (NM_052892, intron 37 of 42)"	AluSq2|SINE|Alu	-26395	NM_004483	2653	Hs.546256	NM_004483	ENSG00000140905	GCSH	GCE|NKH	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
chr18.63211144.-	chr18	63211144	63211145	-	0	NA	Intergenic	AluY|SINE|Alu	206344	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr6.166722180.-	chr6	166722180	166722181	-	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	309	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr10.134034459.-	chr10	134034459	134034460	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34045	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr16.81849403.-	chr16	81849403	81849404	-	0	NA	"intron (NM_002661, intron 2 of 32)"	AluSz|SINE|Alu	-36504	NM_002661	5336	Hs.413111	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3	"phospholipase C, gamma 2 (phosphatidylinositol-specific)"	protein-coding
chr17.25676757.+	chr17	25676757	25676758	+	0	NA	Intergenic	MER52D|LTR|ERV1	55651	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr17.6679497.-	chr17	6679497	6679498	-	0	NA	promoter-TSS (NM_153230)	promoter-TSS (NM_153230)	55	NM_153230	162517	Hs.368364	NM_153230	ENSG00000177294	FBXO39	Fbx39	F-box protein 39	protein-coding
chr20.44462675.+	chr20	44462675	44462676	+	0	NA	"intron (NM_033421, intron 1 of 3)"	CpG	205	NM_033421	90203	Hs.472854	NM_001042632		SNX21	C20orf161|PP3993|SNX-L|dJ337O18.4	sorting nexin family member 21	protein-coding
chrX.53111569.-	chrX	53111569	53111570	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-27	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.246995892.-	chr1	246995892	246995893	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42973	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr22.31744355.-	chr22	31744355	31744356	-	0	NA	Intergenic	AluSp|SINE|Alu	2106	NM_014323	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr16.73116276.+	chr16	73116276	73116277	+	0	NA	Intergenic	AluY|SINE|Alu	-9972	NR_027756	283902	Hs.382776	NM_001101347	ENSG00000260880	HTA	-	uncharacterized LOC283902	miscRNA
chr6.66681574.-	chr6	66681574	66681575	-	0	NA	Intergenic	L1PA3|LINE|L1	-183802	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	"solute carrier family 25, member 51 pseudogene 1"	pseudo
chr12.132116821.+	chr12	132116821	132116822	+	0	NA	Intergenic	L1ME1|LINE|L1	-78811	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr4.5094260.-	chr4	5094260	5094261	-	0	NA	"intron (NM_018401, intron 1 of 11)"	AluSx1|SINE|Alu	-40733	NM_018401	55351	Hs.133062	NM_018401	ENSG00000152953	STK32B	HSA250839|STK32|STKG6|YANK2	serine/threonine kinase 32B	protein-coding
chr8.20674501.+	chr8	20674501	20674502	+	0	NA	Intergenic	LTR17|LTR|ERV1	-156996	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr3.196737694.+	chr3	196737694	196737695	+	0	NA	"intron (NM_005929, intron 9 of 15)"	"intron (NM_005929, intron 9 of 15)"	7917	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MFI2-AS1	-	MFI2 antisense RNA 1	miscRNA
chr17.37768946.-	chr17	37768946	37768947	-	0	NA	Intergenic	Intergenic	4771	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr3.13876288.+	chr3	13876288	13876289	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45330	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr3.50701801.+	chr3	50701801	50701802	+	0	NA	Intergenic	AluY|SINE|Alu	-10710	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr7.2718555.-	chr7	2718555	2718556	-	0	NA	promoter-TSS (NM_133463)	promoter-TSS (NM_133463)	608	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr14.20811174.+	chr14	20811174	20811175	+	0	NA	promoter-TSS (NM_005484)	promoter-TSS (NM_005484)	396	NR_002312	85495	Hs.613102	NR_002312	ENSG00000252678	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	miscRNA
chr1.17034283.+	chr1	17034283	17034284	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12369	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr3.60261984.-	chr3	60261984	60261985	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluY|SINE|Alu	-975149	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr8.65493831.-	chr8	65493831	65493832	-	0	NA	"exon (NM_152414, exon 1 of 1)"	"exon (NM_152414, exon 1 of 1)"	-1036	NM_152414	27319	Hs.743680	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|CAGL85|TNRC20	"basic helix-loop-helix family, member e22"	protein-coding
chr10.28821776.+	chr10	28821776	28821777	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	354	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr13.100934739.-	chr13	100934739	100934740	-	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	-193470	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr19.7895284.+	chr19	7895284	7895285	+	0	NA	"intron (NM_145245, intron 1 of 18)"	"intron (NM_145245, intron 1 of 18)"	123	NM_145245	115704	Hs.26870	NM_001159944	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5-like	protein-coding
chr7.132262452.-	chr7	132262452	132262453	-	0	NA	"intron (NM_181775, intron 2 of 4)"	CpG-24908	1129	NM_001105543	91584	Hs.511454	NM_001105543	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
chr19.10408171.-	chr19	10408171	10408172	-	0	NA	TTS (NM_003259)	TTS (NM_003259)	-7516	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr5.68358792.-	chr5	68358792	68358793	-	0	NA	Intergenic	SVA_D|Other|Other	30984	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr18.11971487.+	chr18	11971487	11971488	+	0	NA	Intergenic	AluSx|SINE|Alu	-9940	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr10.123909541.+	chr10	123909541	123909542	+	0	NA	"intron (NM_206862, intron 7 of 22)"	"intron (NM_206862, intron 7 of 22)"	-13564	NM_206860	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr19.51962917.-	chr19	51962917	51962918	-	0	NA	Intergenic	AluSc5|SINE|Alu	1209	NM_014442	27181	Hs.447899	NM_014442	ENSG00000105366	SIGLEC8	SAF2|SIGLEC-8|SIGLEC8L	sialic acid binding Ig-like lectin 8	protein-coding
chr2.55647036.+	chr2	55647036	55647037	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	21	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr3.1144626.+	chr3	1144626	1144627	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9997	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr3.129048059.-	chr3	129048059	129048060	-	0	NA	Intergenic	AluY|SINE|Alu	12939	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr2.173941035.-	chr2	173941035	173941036	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-470	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr18.77627586.-	chr18	77627586	77627587	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3918	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr13.100150862.+	chr13	100150862	100150863	+	0	NA	Intergenic	CpG	-2766	NM_004800	9375	Hs.607896	NM_004800	ENSG00000125304	TM9SF2	P76	transmembrane 9 superfamily member 2	protein-coding
chr16.31449031.+	chr16	31449031	31449032	+	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	5317	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr2.35387170.+	chr2	35387170	35387171	+	0	NA	Intergenic	AluY|SINE|Alu	1195543	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr4.26862242.-	chr4	26862242	26862243	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	71	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr15.42014517.+	chr15	42014517	42014518	+	0	NA	"intron (NM_001164273, intron 9 of 23)"	AluY|SINE|Alu	30734	NR_030356	693211		NR_030356		MIR626	MIRN626|hsa-mir-626	microRNA 626	miscRNA
chr2.158052715.+	chr2	158052715	158052716	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61625	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr17.78977909.+	chr17	78977909	78977910	+	0	NA	Intergenic	CpG	12268	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr2.131833997.-	chr2	131833997	131833998	-	0	NA	"intron (NM_001009993, intron 2 of 6)"	AluYc|SINE|Alu	-17007	NM_001009993	130074	Hs.534679	NM_001009993	ENSG00000152102	FAM168B	MANI	"family with sequence similarity 168, member B"	protein-coding
chr20.56099621.+	chr20	56099621	56099622	+	0	NA	"non-coding (NR_072975, exon 1 of 11)"	"non-coding (NR_072975, exon 1 of 11)"	302	NM_001269041	140690	Hs.131543	NM_001269040	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor (zinc finger protein)-like	protein-coding
chr2.234891631.+	chr2	234891631	234891632	+	0	NA	"intron (NM_024080, intron 19 of 25)"	"intron (NM_024080, intron 19 of 25)"	65588	NM_024080	79054	Hs.366053	NM_024080	ENSG00000144481	TRPM8	LTRPC6|TRPP8	"transient receptor potential cation channel, subfamily M, member 8"	protein-coding
chr9.137217352.-	chr9	137217352	137217353	-	0	NA	promoter-TSS (NM_002957)	promoter-TSS (NM_002957)	964	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr2.43254072.+	chr2	43254072	43254073	+	0	NA	Intergenic	Intergenic	199673	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr16.1846862.+	chr16	1846862	1846863	+	0	NA	Intergenic	AluY|SINE|Alu	-1953	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr19.44538316.+	chr19	44538316	44538317	+	0	NA	Intergenic	AluJb|SINE|Alu	8822	NM_013360	7673	Hs.279840	NM_001129996	ENSG00000159885	ZNF222	-	zinc finger protein 222	protein-coding
chr2.47661308.-	chr2	47661308	47661309	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31102	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr6.108398219.+	chr6	108398219	108398220	+	0	NA	Intergenic	Intergenic	-2278	NM_014028	28962	Hs.741218	NM_014028	ENSG00000081087	OSTM1	GIPN|GL|OPTB5	osteopetrosis associated transmembrane protein 1	protein-coding
chr16.632080.-	chr16	632080	632081	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7277	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr8.101767155.+	chr8	101767155	101767156	+	0	NA	Intergenic	AluSx3|SINE|Alu	-32840	NM_002568	26986	Hs.387804	NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	"poly(A) binding protein, cytoplasmic 1"	protein-coding
chr19.1663582.-	chr19	1663582	1663583	-	0	NA	Intergenic	AluSp|SINE|Alu	11254	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr1.234350454.+	chr1	234350454	234350455	+	0	NA	"intron (NM_173508, intron 2 of 7)"	CpG	-91759	NR_039818	100616380		NR_039818		MIR4671	-	microRNA 4671	miscRNA
chr1.29484419.+	chr1	29484419	29484420	+	0	NA	"intron (NM_005626, intron 3 of 5)"	AluSz|SINE|Alu	24218	NM_005626	6429	Hs.469970	NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine/arginine-rich splicing factor 4	protein-coding
chr17.45266294.+	chr17	45266294	45266295	+	0	NA	"intron (NM_001114091, intron 1 of 18)"	CpG	371	NM_001114091	996	Hs.463295	NM_001114091	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|HNUC|NUC2	cell division cycle 27	protein-coding
chr6.75914804.-	chr6	75914804	75914805	-	0	NA	"intron (NM_080645, intron 1 of 50)"	CpG	-819	NM_080645	1303	Hs.101302	NM_004370	ENSG00000111799	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	"collagen, type XII, alpha 1"	protein-coding
chr2.193925483.+	chr2	193925483	193925484	+	0	NA	Intergenic	AluYb8|SINE|Alu	310912	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071	"PCGEM1, prostate-specific transcript (non-protein coding)"	miscRNA
chr22.17719087.-	chr22	17719087	17719088	-	0	NA	Intergenic	AluSg|SINE|Alu	28308	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr8.141523824.-	chr8	141523824	141523825	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1743	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr5.1824199.+	chr5	1824199	1824200	+	0	NA	Intergenic	AluSz6|SINE|Alu	22703	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr11.77200918.+	chr11	77200918	77200919	+	0	NA	Intergenic	SVA_D|Other|Other	-15810	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr17.25676748.-	chr17	25676748	25676749	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55642	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr10.126538763.-	chr10	126538763	126538764	-	0	NA	Intergenic	AluSx|SINE|Alu	-48409	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr5.150051444.+	chr5	150051444	150051445	+	0	NA	"exon (NM_133371, exon 5 of 7)"	"exon (NM_133371, exon 5 of 7)"	11041	NM_133371	91977	Hs.91626	NM_001122853	ENSG00000164591	MYOZ3	CS-3|CS3|FRP3	myozenin 3	protein-coding
chr14.73651090.-	chr14	73651090	73651091	-	0	NA	"intron (NM_000021, intron 5 of 11)"	SVA_F|Other|Other	-47947	NM_007318	5663	Hs.3260	NM_000021	ENSG00000080815	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
chr17.72754634.-	chr17	72754634	72754635	-	0	NA	"intron (NM_004252, intron 1 of 5)"	"intron (NM_004252, intron 1 of 5)"	-9882	NR_037409	100500847		NR_037409	ENSG00000264624	MIR3615	-	microRNA 3615	miscRNA
chr2.236999645.-	chr2	236999645	236999646	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-77007	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.213546691.+	chr2	213546691	213546692	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143339	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr14.50838467.+	chr14	50838467	50838468	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24150	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr4.1801980.+	chr4	1801980	1801981	+	0	NA	"intron (NM_000142, intron 4 of 17)"	"intron (NM_000142, intron 4 of 17)"	6941	NM_022965	2261	Hs.1420	NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
chr2.179303697.+	chr2	179303697	179303698	+	0	NA	"intron (NM_003690, intron 6 of 7)"	AluY|SINE|Alu	11658	NM_001139518	8575	Hs.570274	NM_001139517	ENSG00000180228	PRKRA	DYT16|PACT|RAX	"protein kinase, interferon-inducible double stranded RNA dependent activator"	protein-coding
chr18.31028131.-	chr18	31028131	31028132	-	0	NA	Intergenic	L1MCa|LINE|L1	7446	NM_198995	374864	Hs.115461	NM_001105528	ENSG00000166960	CCDC178	C18orf34	coiled-coil domain containing 178	protein-coding
chr11.62370254.-	chr11	62370254	62370255	-	0	NA	promoter-TSS (NM_004739)	promoter-TSS (NM_004739)	942	NM_004739	9219	Hs.173043	NM_004739	ENSG00000149480	MTA2	MTA1L1|PID	"metastasis associated 1 family, member 2"	protein-coding
chr6.170055356.+	chr6	170055356	170055357	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46803	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr1.21058473.+	chr1	21058473	21058474	+	0	NA	"intron (NM_001103161, intron 1 of 9)"	CpG	660	NM_001103161	400745	Hs.591522	NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
chr10.133869140.+	chr10	133869140	133869141	+	0	NA	Intergenic	Intergenic	-49173	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr13.110551458.-	chr13	110551458	110551459	-	0	NA	Intergenic	AluSx|SINE|Alu	112544	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr5.64597644.-	chr5	64597644	64597645	-	0	NA	"intron (NM_197941, intron 9 of 24)"	AluSx|SINE|Alu	-180060	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	"ADAM metallopeptidase with thrombospondin type 1 motif, 6"	protein-coding
chr22.38166136.-	chr22	38166136	38166137	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	-23895	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr12.34501172.+	chr12	34501172	34501173	+	0	NA	Intergenic	GSATII|Satellite|centr	325956	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr7.56438028.+	chr7	56438028	56438029	+	0	NA	Intergenic	Intergenic	78040	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr10.95605037.-	chr10	95605037	95605038	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48693	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chrX.90204100.+	chrX	90204100	90204101	+	0	NA	Intergenic	AluY|SINE|Alu	-485497	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr1.8399440.-	chr1	8399440	8399441	-	0	NA	"intron (NM_001080397, intron 6 of 7)"	"intron (NM_001080397, intron 6 of 7)"	-15050	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	"solute carrier family 45, member 1"	protein-coding
chr22.44763607.-	chr22	44763607	44763608	-	0	NA	Intergenic	Intergenic	54876	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
chr2.92172326.+	chr2	92172326	92172327	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43167	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr16.48419720.-	chr16	48419720	48419721	-	0	NA	promoter-TSS (NM_003031)	promoter-TSS (NM_003031)	491	NM_003031	6477	Hs.706828	NM_001006610	ENSG00000196470	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
chr16.3203723.+	chr16	3203723	3203724	+	0	NA	Intergenic	AluSg|SINE|Alu	18589	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr5.25535479.-	chr5	25535479	25535480	-	0	NA	Intergenic	AluY|SINE|Alu	694787	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr14.101693705.+	chr14	101693705	101693706	+	0	NA	Intergenic	Intergenic	157457	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr20.61810928.-	chr20	61810928	61810929	-	0	NA	TTS (NR_029670)	TTS (NR_029670)	-1076	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3	microRNA 124-3	miscRNA
chr3.194014797.+	chr3	194014797	194014798	+	0	NA	Intergenic	CpG	15796	NR_024480	100131551	Hs.606465	NR_024480	ENSG00000214145	LOC100131551	-	uncharacterized LOC100131551	miscRNA
chr20.39978525.-	chr20	39978525	39978526	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8965	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr6.1035045.+	chr6	1035045	1035046	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66522	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chr2.91874345.+	chr2	91874345	91874346	+	0	NA	Intergenic	CpG	-26370	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr7.821284.+	chr7	821284	821285	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33910	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr3.1144524.+	chr3	1144524	1144525	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9895	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr20.13660613.+	chr20	13660613	13660614	+	0	NA	Intergenic	AluY|SINE|Alu	-41030	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr19.4065772.-	chr19	4065772	4065773	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1044	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr4.83939811.-	chr4	83939811	83939812	-	0	NA	Intergenic	AluSq2|SINE|Alu	5771	NM_001115007	132660	Hs.96952	NM_001115007	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120	lin-54 homolog (C. elegans)	protein-coding
chr16.3109388.+	chr16	3109388	3109389	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5925	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr17.7183193.+	chr17	7183193	7183194	+	0	NA	Intergenic	AluSx|SINE|Alu	-1861	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr1.3517758.-	chr1	3517758	3517759	-	0	NA	"intron (NM_001409, intron 2 of 36)"	"intron (NM_001409, intron 2 of 36)"	-10301	NM_001409	1953	Hs.593645	NM_001409		MEGF6	EGFL3	multiple EGF-like-domains 6	protein-coding
chr6.88090597.-	chr6	88090597	88090598	-	0	NA	Intergenic	AluJb|SINE|Alu	16245	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr17.809931.+	chr17	809931	809932	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42580	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr14.97183962.+	chr14	97183962	97183963	+	0	NA	Intergenic	AluY|SINE|Alu	-79722	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr14.105736140.+	chr14	105736140	105736141	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20399	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr3.53225253.+	chr3	53225253	53225254	+	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	30030	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr8.1312666.-	chr8	1312666	1312667	-	0	NA	Intergenic	Intergenic	61839	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr11.15582436.-	chr11	15582436	15582437	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-445952	NM_001042536	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
chr20.48877677.-	chr20	48877677	48877678	-	0	NA	Intergenic	L2a|LINE|L2	31580	NR_034124	284751	Hs.282325	NR_034124	ENSG00000203999	LOC284751	-	uncharacterized LOC284751	miscRNA
chr12.34492635.-	chr12	34492635	34492636	-	0	NA	Intergenic	GSATII|Satellite|centr	-317419	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr18.2377818.-	chr18	2377818	2377819	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193671	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr21.47403471.-	chr21	47403471	47403472	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1808	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr21.44823087.+	chr21	44823087	44823088	+	0	NA	Intergenic	Intergenic	23915	NM_173354	150094	Hs.700423	NM_173354	ENSG00000142178	SIK1	MSK|SIK|SNF1LK	salt-inducible kinase 1	protein-coding
chr2.61701819.-	chr2	61701819	61701820	-	0	NA	Intergenic	AluSg|SINE|Alu	3970	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr18.60987800.+	chr18	60987800	60987801	+	0	NA	Intergenic	CpG	-1187	NM_000657	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr5.68462993.-	chr5	68462993	68462994	-	0	NA	"5' UTR (NM_031966, exon 1 of 9)"	"5' UTR (NM_031966, exon 1 of 9)"	-156	NM_031966	891	Hs.23960	NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
chr6.57322597.+	chr6	57322597	57322598	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140175	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr8.91013864.-	chr8	91013864	91013865	-	0	NA	"intron (NM_001359, intron 1 of 9)"	CpG	-284	NM_001359	1666	Hs.492212	NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	"2,4-dienoyl CoA reductase 1, mitochondrial"	protein-coding
chr19.47628035.-	chr19	47628035	47628036	-	0	NA	Intergenic	AluY|SINE|Alu	6045	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr17.3820270.+	chr17	3820270	3820271	+	0	NA	promoter-TSS (NM_002558)	promoter-TSS (NM_002558)	-310	NM_002558	5023	Hs.41735	NM_002558	ENSG00000108405	P2RX1	P2X1	"purinergic receptor P2X, ligand-gated ion channel, 1"	protein-coding
chr3.164852016.-	chr3	164852016	164852017	-	0	NA	Intergenic	AluY|SINE|Alu	55733	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr4.58090215.-	chr4	58090215	58090216	-	0	NA	Intergenic	SVA_D|Other|Other	113664	NM_001253835	3490	Hs.691061	NM_001253835	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
chr17.42869159.-	chr17	42869159	42869160	-	0	NA	Intergenic	AluY|SINE|Alu	-32591	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr12.12518399.+	chr12	12518399	12518400	+	0	NA	"intron (NM_058169, intron 2 of 3)"	AluJb|SINE|Alu	8379	NM_058169	118426	Hs.720779	NM_058169	ENSG00000165714	LOH12CR1	LOH1CR12	"loss of heterozygosity, 12, chromosomal region 1"	protein-coding
chr1.150309655.-	chr1	150309655	150309656	-	0	NA	"intron (NM_004698, intron 7 of 15)"	AluY|SINE|Alu	-15727	NM_004698	9129	Hs.11776	NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18	PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)	protein-coding
chr17.18178995.-	chr17	18178995	18178996	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14571	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr7.2944151.-	chr7	2944151	2944152	-	0	NA	Intergenic	Intergenic	60192	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr14.77227750.-	chr14	77227750	77227751	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	485	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr20.4729634.-	chr20	4729634	4729635	-	0	NA	Intergenic	Intergenic	8320	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr3.32863319.+	chr3	32863319	32863320	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3809	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr19.5948226.+	chr19	5948226	5948227	+	0	NA	"intron (NM_007320, intron 2 of 15)"	AluY|SINE|Alu	30094	NM_003624	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
chr13.19449402.+	chr13	19449402	19449403	+	0	NA	Intergenic	REP522|Satellite|telo	-3293	NR_027995	284232	Hs.742626	NR_027995		ANKRD20A9P	-	"ankyrin repeat domain 20 family, member A9, pseudogene"	pseudo
chr15.75701815.+	chr15	75701815	75701816	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	-40847	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr12.129892183.+	chr12	129892183	129892184	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496029	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr11.1946048.+	chr11	1946048	1946049	+	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	5249	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr3.125203793.-	chr3	125203793	125203794	-	0	NA	"intron (NR_073435, intron 5 of 12)"	AluSx1|SINE|Alu	-35265	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr12.132623251.+	chr12	132623251	132623252	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5629	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr2.10127193.+	chr2	10127193	10127194	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSz6|SINE|Alu	35401	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr2.64811855.+	chr2	64811855	64811856	+	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	-22591	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr7.72415282.+	chr7	72415282	72415283	+	0	NA	"intron (NM_001257190, intron 14 of 15)"	L2b|LINE|L2	10020	NR_033323	260294	Hs.510927	NM_001039487	ENSG00000106133	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	"NOP2/Sun domain family, member 5 pseudogene 2"	pseudo
chr1.7952815.-	chr1	7952815	7952816	-	0	NA	Intergenic	AluSx1|SINE|Alu	39264	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr19.14156315.-	chr19	14156315	14156316	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13656	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr22.34378913.-	chr22	34378913	34378914	-	0	NA	Intergenic	AluSx1|SINE|Alu	62497	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr6.13335705.-	chr6	13335705	13335706	-	0	NA	Intergenic	AluYa5|SINE|Alu	6918	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr13.114899226.+	chr13	114899226	114899227	+	0	NA	Intergenic	Intergenic	-1131	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr22.18532571.-	chr22	18532571	18532572	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20420	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr6.121079684.-	chr6	121079684	121079685	-	0	NA	Intergenic	AluY|SINE|Alu	-575960	NM_152730	221322	Hs.121396	NM_152730	ENSG00000146350	C6orf170	BROMI|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	chromosome 6 open reading frame 170	protein-coding
chr16.31932499.+	chr16	31932499	31932500	+	0	NA	Intergenic	AluY|SINE|Alu	47420	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr5.170687174.+	chr5	170687174	170687175	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49114	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr4.1673244.+	chr4	1673244	1673245	+	0	NA	"intron (NM_001174070, intron 1 of 4)"	(CCCCAG)n|Simple_repeat|Simple_repeat	12474	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr14.105158938.+	chr14	105158938	105158939	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2995	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr1.101426770.+	chr1	101426770	101426771	+	0	NA	"intron (NM_133496, intron 8 of 10)"	AluY|SINE|Alu	64592	NM_015958	51611	Hs.440776	NM_001077394		DPH5	CGI-30|HSPC143|NPD015	DPH5 homolog (S. cerevisiae)	protein-coding
chr9.133797635.-	chr9	133797635	133797636	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-16604	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr17.18755276.-	chr17	18755276	18755277	-	0	NA	Intergenic	AluSp|SINE|Alu	4336	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr10.4887338.+	chr10	4887338	4887339	+	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	18969	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr13.62067796.+	chr13	62067796	62067797	+	0	NA	Intergenic	AluY|SINE|Alu	-78141	NM_022843	64881	Hs.391781	NM_022843	ENSG00000197991	PCDH20	PCDH13	protocadherin 20	protein-coding
chr4.141334757.+	chr4	141334757	141334758	+	0	NA	"intron (NM_004362, intron 1 of 14)"	L1PA2|LINE|L1	14058	NM_001130675	1047	Hs.86368	NM_001130675	ENSG00000153132	CLGN	-	calmegin	protein-coding
chr2.87569780.-	chr2	87569780	87569781	-	0	NA	Intergenic	Intergenic	185194	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr12.116724170.+	chr12	116724170	116724171	+	0	NA	Intergenic	AluY|SINE|Alu	-9179	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr1.1574885.+	chr1	1574885	1574886	+	0	NA	"intron (NM_033486, intron 11 of 19)"	"intron (NM_033486, intron 11 of 19)"	6726	NR_002946	8511	Hs.671760	NR_002946	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
chr20.45935919.-	chr20	45935919	45935920	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11327	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr5.141451785.+	chr5	141451785	141451786	+	0	NA	Intergenic	AluSq|SINE|Alu	-36539	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chrX.53111660.+	chrX	53111660	53111661	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	118	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.42782468.+	chr2	42782468	42782469	+	0	NA	Intergenic	AluSp|SINE|Alu	-13203	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr15.100080073.-	chr15	100080073	100080074	-	0	NA	Intergenic	AluSq2|SINE|Alu	26060	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr11.123448354.-	chr11	123448354	123448355	-	0	NA	"intron (NM_020716, intron 2 of 19)"	CpG	-51826	NM_020716	57476	Hs.732509	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
chr9.134449881.-	chr9	134449881	134449882	-	0	NA	Intergenic	AluSx1|SINE|Alu	43219	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr8.41583296.-	chr8	41583296	41583297	-	0	NA	"exon (NM_000037, exon 6 of 43)"	"exon (NM_000037, exon 6 of 43)"	60492	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr2.75824369.-	chr2	75824369	75824370	-	0	NA	Intergenic	AluY|SINE|Alu	27521	NM_032181	84141	Hs.302346	NM_001135032	ENSG00000115363	EVA1A	FAM176A|TMEM166	eva-1 homolog A (C. elegans)	protein-coding
chrX.53111575.-	chrX	53111575	53111576	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-33	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr10.4887330.+	chr10	4887330	4887331	+	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	18961	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr16.53227220.-	chr16	53227220	53227221	-	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	-138275	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr17.79790893.-	chr17	79790893	79790894	-	0	NA	TTS (NM_001007533)	TTS (NM_001007533)	-274	NM_001093767	348262	Hs.514632	NM_001093767	ENSG00000225663	FAM195B	-	"family with sequence similarity 195, member B"	protein-coding
chr22.22550456.+	chr22	22550456	22550457	+	0	NA	Intergenic	Intergenic	-48744	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr18.14044789.+	chr18	14044789	14044790	+	0	NA	Intergenic	AluY|SINE|Alu	87700	NM_145287	162655	Hs.352635	NM_145287		ZNF519	HsT2362	zinc finger protein 519	protein-coding
chr9.138065707.-	chr9	138065707	138065708	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7748	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr1.179835728.-	chr1	179835728	179835729	-	0	NA	"intron (NM_001199260, intron 2 of 6)"	AluSp|SINE|Alu	-11213	NM_022347	163590	Hs.723247	NM_001199260	ENSG00000169905	TOR1AIP2	IFRG15|LULL1|NET9|RP11-12M5.5	torsin A interacting protein 2	protein-coding
chr7.128142015.-	chr7	128142015	128142016	-	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	-25232	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr10.126464506.-	chr10	126464506	126464507	-	0	NA	"intron (NM_212554, intron 3 of 6)"	AluY|SINE|Alu	-15933	NM_212554	399818	Hs.741365	NM_212554		METTL10	C10orf138|Em:AC068896.3	methyltransferase like 10	protein-coding
chr19.34287511.+	chr19	34287511	34287512	+	0	NA	promoter-TSS (NM_001129995)	promoter-TSS (NM_001129995)	-240	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr20.33062709.+	chr20	33062709	33062710	+	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	8579	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr15.76627310.+	chr15	76627310	76627311	+	0	NA	Intergenic	AluSg|SINE|Alu	-1837	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr5.14460433.+	chr5	14460433	14460434	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121458	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr5.178157734.-	chr5	178157734	178157735	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	31	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr12.113494407.-	chr12	113494407	113494408	-	0	NA	Intergenic	CpG	1255	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr1.27394502.-	chr1	27394502	27394503	-	0	NA	Intergenic	AluY|SINE|Alu	55169	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr1.17298982.+	chr1	17298982	17298983	+	0	NA	"3' UTR (NM_014675, exon 37 of 37)"	"3' UTR (NM_014675, exon 37 of 37)"	8191	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr7.158790543.+	chr7	158790543	158790544	+	0	NA	Intergenic	Intergenic	-10502	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr3.45348422.+	chr3	45348422	45348423	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80608	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr2.208031304.-	chr2	208031304	208031305	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-276	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr2.242143578.+	chr2	242143578	242143579	+	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	15654	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr1.226908713.+	chr1	226908713	226908714	+	0	NA	"intron (NM_002221, intron 2 of 7)"	AluSg|SINE|Alu	18163	NM_002221	3707	Hs.659396	NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
chr19.781953.-	chr19	781953	781954	-	0	NA	Intergenic	Intergenic	15439	NM_031991	5725	Hs.172550	NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
chr6.24769548.-	chr6	24769548	24769549	-	0	NA	Intergenic	AluSz|SINE|Alu	5611	NM_001251990	51053	Hs.234896	NM_001251989	ENSG00000112312	GMNN	Gem	"geminin, DNA replication inhibitor"	protein-coding
chr2.203027116.+	chr2	203027116	203027117	+	0	NA	"intron (NM_001277372, intron 14 of 21)"	AluSx|SINE|Alu	76206	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr3.47744718.-	chr3	47744718	47744719	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78687	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr15.85197625.+	chr15	85197625	85197626	+	0	NA	promoter-TSS (NM_032856)	promoter-TSS (NM_032856)	-104	NM_032856	84942	Hs.165736	NM_032856	ENSG00000177082	WDR73	-	WD repeat domain 73	protein-coding
chr5.501515.+	chr5	501515	501516	+	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	23034	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr3.142297591.+	chr3	142297591	142297592	+	0	NA	promoter-TSS (NM_001184)	promoter-TSS (NM_001184)	77	NM_001184	545	Hs.271791	NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ataxia telangiectasia and Rad3 related	protein-coding
chr17.3792511.-	chr17	3792511	3792512	-	0	NA	"intron (NM_172207, intron 1 of 15)"	"intron (NM_172207, intron 1 of 15)"	-1526	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr7.54614225.+	chr7	54614225	54614226	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4206	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr1.197042161.-	chr1	197042161	197042162	-	0	NA	Intergenic	AluY|SINE|Alu	5764	NM_001994	2165	Hs.435782	NM_001994	ENSG00000143278	F13B	FXIIIB	"coagulation factor XIII, B polypeptide"	protein-coding
chr9.34329568.-	chr9	34329568	34329569	-	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-64	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr3.49047712.-	chr3	49047712	49047713	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3075	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr3.46792400.-	chr3	46792400	46792401	-	0	NA	Intergenic	CpG	6155	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr1.10727888.+	chr1	10727888	10727889	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128845	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr1.7952795.+	chr1	7952795	7952796	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39244	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr18.11086375.+	chr18	11086375	11086376	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62386	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr2.43254035.+	chr2	43254035	43254036	+	0	NA	Intergenic	Intergenic	199710	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr5.473110.-	chr5	473110	473111	-	0	NA	promoter-TSS (NR_024158)	promoter-TSS (NR_024158)	30	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	miscRNA
chr17.33416322.-	chr17	33416322	33416323	-	0	NA	promoter-TSS (NR_037713)	promoter-TSS (NR_037713)	-26	NR_037713	117584	Hs.13680	NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE-like domain containing E3 ubiquitin protein ligase	protein-coding
chr11.69189599.+	chr11	69189599	69189600	+	0	NA	Intergenic	Intergenic	127977	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr6.152343853.+	chr6	152343853	152343854	+	0	NA	"intron (NM_001122742, intron 7 of 9)"	AluSp|SINE|Alu	215039	NM_000125	2099	Hs.208124	NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|Era|NR3A1	estrogen receptor 1	protein-coding
chr9.138437857.+	chr9	138437857	138437858	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-128	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr1.9517591.-	chr1	9517591	9517592	-	0	NA	Intergenic	AluJb|SINE|Alu	81937	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr15.100514179.-	chr15	100514179	100514180	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167047	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr21.43198241.-	chr21	43198241	43198242	-	0	NA	Intergenic	Intergenic	10992	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr11.114967391.+	chr11	114967391	114967392	+	0	NA	Intergenic	AluSz|SINE|Alu	407850	NM_014333	23705	Hs.370510	NM_001098517	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
chr16.28435289.+	chr16	28435289	28435290	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2486	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr1.221053154.-	chr1	221053154	221053155	-	0	NA	"5' UTR (NM_021958, exon 1 of 4)"	"5' UTR (NM_021958, exon 1 of 4)"	-411	NM_021958	3142	Hs.74870	NM_021958		HLX	HB24|HLX1	H2.0-like homeobox	protein-coding
chrX.40029651.-	chrX	40029651	40029652	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6931	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr7.73457744.+	chr7	73457744	73457745	+	0	NA	"intron (NM_001081753, intron 8 of 30)"	"intron (NM_001081753, intron 8 of 30)"	15317	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr22.51001349.+	chr22	51001349	51001350	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-21	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr19.13976111.+	chr19	13976111	13976112	+	0	NA	Intergenic	CpG	-9402	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	miscRNA
chrX.107355818.+	chrX	107355818	107355819	+	0	NA	"intron (NM_052936, intron 1 of 12)"	AluY|SINE|Alu	20919	NM_178270	115201	Hs.8763	NM_052936	ENSG00000101844	ATG4A	APG4A|AUTL2	"autophagy related 4A, cysteine peptidase"	protein-coding
chr9.99114717.+	chr9	99114717	99114718	+	0	NA	"intron (NM_007001, intron 4 of 11)"	AluSx|SINE|Alu	31275	NM_007001	11046	Hs.731624	NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	"solute carrier family 35, member D2"	protein-coding
chr7.63023286.-	chr7	63023286	63023287	-	0	NA	Intergenic	Intergenic	58182	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr2.129491388.-	chr2	129491388	129491389	-	0	NA	Intergenic	Intergenic	415217	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr2.65087238.+	chr2	65087238	65087239	+	0	NA	Intergenic	Intergenic	72343	NR_036586	400958	Hs.591565	NR_036586		LOC400958	-	uncharacterized LOC400958	miscRNA
chr19.49529826.+	chr19	49529826	49529827	+	0	NA	Intergenic	AluSz|SINE|Alu	-2194	NM_000737	1082	Hs.743279	NM_000737	ENSG00000104827	CGB	CGB3|CGB5|CGB7|CGB8|hCGB	"chorionic gonadotropin, beta polypeptide"	protein-coding
chr4.166248582.+	chr4	166248582	166248583	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-236	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr8.19626752.+	chr8	19626752	19626753	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48166	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr2.240980309.-	chr2	240980309	240980310	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2090	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr8.66541153.+	chr8	66541153	66541154	+	0	NA	"intron (NM_018120, intron 1 of 6)"	AluSx1|SINE|Alu	5299	NM_018120	55156	Hs.269542	NM_018120	ENSG00000104442	ARMC1	Arcp	armadillo repeat containing 1	protein-coding
chr19.48814151.-	chr19	48814151	48814152	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9181	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr19.38836212.-	chr19	38836212	38836213	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9769	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chrM.15242.-	chrM	15242	15243	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr18.77244836.+	chr18	77244836	77244837	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84510	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr19.5409939.-	chr19	5409939	5409940	-	0	NA	Intergenic	AluY|SINE|Alu	45487	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr16.22987680.-	chr16	22987680	22987681	-	0	NA	Intergenic	AluSc8|SINE|Alu	-161820	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr19.11060481.-	chr19	11060481	11060482	-	0	NA	Intergenic	AluY|SINE|Alu	11117	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chrM.11419.-	chrM	11419	11420	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.25344560.-	chr12	25344560	25344561	-	0	NA	"intron (NM_018272, intron 1 of 15)"	AluSc8|SINE|Alu	-3534	NM_001082973	55259	Hs.407771	NM_001082972	ENSG00000118307	CASC1	LAS1|PPP1R54	cancer susceptibility candidate 1	protein-coding
chr1.2586417.-	chr1	2586417	2586418	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	21936	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr2.192110011.+	chr2	192110011	192110012	+	0	NA	promoter-TSS (NM_012223)	promoter-TSS (NM_012223)	-96	NM_001130158	4430	Hs.439620	NM_001130158	ENSG00000128641	MYO1B	myr1	myosin IB	protein-coding
chr12.1605395.+	chr12	1605395	1605396	+	0	NA	TTS (NR_027946)	TTS (NR_027946)	-4262	NR_028415	100292680	Hs.391695	NR_028415		LOC100292680	-	uncharacterized LOC100292680	miscRNA
chr10.135104718.+	chr10	135104718	135104719	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14311	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr7.150812739.+	chr7	150812739	150812740	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28913	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr1.6051433.+	chr1	6051433	6051434	+	0	NA	promoter-TSS (NM_001199861)	promoter-TSS (NM_001199861)	-925	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr4.55034946.-	chr4	55034946	55034947	-	0	NA	Intergenic	AluSx3|SINE|Alu	60318	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr7.70646760.-	chr7	70646760	70646761	-	0	NA	"intron (NM_022479, intron 1 of 10)"	AluJr|SINE|Alu	-49237	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr19.2424678.-	chr19	2424678	2424679	-	0	NA	TTS (NM_012458)	TTS (NM_012458)	-3197	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr8.41166064.-	chr8	41166064	41166065	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-926	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr20.62479225.+	chr20	62479225	62479226	+	0	NA	Intergenic	Intergenic	-13341	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr17.77162059.-	chr17	77162059	77162060	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-91040	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr18.74140081.+	chr18	74140081	74140082	+	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	67065	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr6.75914762.+	chr6	75914762	75914763	+	0	NA	"intron (NM_080645, intron 1 of 50)"	CpG	861	NM_080645	1303	Hs.101302	NM_004370	ENSG00000111799	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	"collagen, type XII, alpha 1"	protein-coding
chr11.64138394.-	chr11	64138394	64138395	-	0	NA	"intron (NM_003942, intron 16 of 16)"	AluSg|SINE|Alu	-2320	NR_031602	100302280		NR_031602		MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	miscRNA
chr9.74827301.-	chr9	74827301	74827302	-	0	NA	"intron (NM_001242505, intron 4 of 15)"	AluY|SINE|Alu	-63034	NM_004293	9615	Hs.494163	NM_001242505	ENSG00000119125	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
chr18.63211138.-	chr18	63211138	63211139	-	0	NA	Intergenic	AluY|SINE|Alu	206350	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr10.35336424.+	chr10	35336424	35336425	+	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	26834	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr20.3079561.+	chr20	3079561	3079562	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7996	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	miscRNA
chr10.133016245.-	chr10	133016245	133016246	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93739	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr9.10786993.-	chr9	10786993	10786994	-	0	NA	Intergenic	AluYc3|SINE|Alu	174270	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr6.13335736.-	chr6	13335736	13335737	-	0	NA	Intergenic	AluYa5|SINE|Alu	6949	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr9.130743328.+	chr9	130743328	130743329	+	0	NA	promoter-TSS (NM_001035254)	promoter-TSS (NM_001035254)	-516	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr11.915986.+	chr11	915986	915987	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-928	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr3.133028701.+	chr3	133028701	133028702	+	0	NA	"intron (NM_023943, intron 3 of 5)"	AluYa5|SINE|Alu	-90089	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|LIFL-L|PHAKOSIN	"beaded filament structural protein 2, phakinin"	protein-coding
chr2.232277193.-	chr2	232277193	232277194	-	0	NA	Intergenic	Intergenic	-16858	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr3.36494704.-	chr3	36494704	36494705	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72607	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr14.76577619.+	chr14	76577619	76577620	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40640	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr3.102973887.+	chr3	102973887	102973888	+	0	NA	Intergenic	SVA_D|Other|Other	820028	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr6.74427449.+	chr6	74427449	74427450	+	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	21935	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr3.38106442.+	chr3	38106442	38106443	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25746	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr12.57177803.+	chr12	57177803	57177804	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20695	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr3.57630920.-	chr3	57630920	57630921	-	0	NA	"intron (NM_152678, intron 11 of 19)"	AluSg|SINE|Alu	47705	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
chr19.16582298.-	chr19	16582298	16582299	-	0	NA	"intron (NM_001258375, intron 1 of 21)"	CpG	-525	NM_001258374	58513	Hs.742093	NM_001258374	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
chrX.20694392.-	chrX	20694392	20694393	-	0	NA	Intergenic	AluY|SINE|Alu	409642	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr6.134540757.+	chr6	134540757	134540758	+	0	NA	"intron (NM_001143676, intron 2 of 13)"	AluSp|SINE|Alu	-41747	NM_001143677	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr20.62127634.-	chr20	62127634	62127635	-	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	-3034	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr10.102440735.-	chr10	102440735	102440736	-	0	NA	Intergenic	CpG	64733	NM_003988	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	PAPRS	paired box 2	protein-coding
chr9.127571350.+	chr9	127571350	127571351	+	0	NA	"intron (NM_182487, intron 7 of 7)"	AluSx1|SINE|Alu	31913	NM_182487	169611	Hs.357004	NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin-like 2A	protein-coding
chr14.105242460.+	chr14	105242460	105242461	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17478	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr19.50033443.-	chr19	50033443	50033444	-	0	NA	"intron (NM_020650, intron 2 of 6)"	AluSx|SINE|Alu	-2568	NM_020650	57333	Hs.567550	NM_020650	ENSG00000142552	RCN3	RLP49	"reticulocalbin 3, EF-hand calcium binding domain"	protein-coding
chr12.126371089.-	chr12	126371089	126371090	-	0	NA	Intergenic	AluY|SINE|Alu	-96831	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chr12.64883613.+	chr12	64883613	64883614	+	0	NA	"intron (NM_013254, intron 12 of 20)"	AluSc8|SINE|Alu	37773	NM_013254	29110	Hs.505874	NM_013254	ENSG00000183735	TBK1	NAK|T2K	TANK-binding kinase 1	protein-coding
chr5.18111560.-	chr5	18111560	18111561	-	0	NA	Intergenic	AluY|SINE|Alu	724141	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr9.16766043.-	chr9	16766043	16766044	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104743	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr1.40953687.+	chr1	40953687	40953688	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10385	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr5.86907768.+	chr5	86907768	86907769	+	0	NA	Intergenic	AluY|SINE|Alu	-198918	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr17.79427763.+	chr17	79427763	79427764	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9549	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr4.114652859.+	chr4	114652859	114652860	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30224	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr11.68303157.-	chr11	68303157	68303158	-	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	-74971	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr6.108314638.+	chr6	108314638	108314639	+	0	NA	Intergenic	AluY|SINE|Alu	-35156	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr9.6807780.-	chr9	6807780	6807781	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50139	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr1.8877710.+	chr1	8877710	8877711	+	0	NA	promoter-TSS (NM_012102)	promoter-TSS (NM_012102)	-11	NM_001042681	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr14.101617838.+	chr14	101617838	101617839	+	0	NA	Intergenic	Intergenic	81590	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr15.20545753.+	chr15	20545753	20545754	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	57756	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr5.133968947.-	chr5	133968947	133968948	-	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	414	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr21.44478111.-	chr21	44478111	44478112	-	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	-17929	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr10.13354504.-	chr10	13354504	13354505	-	0	NA	Intergenic	AluSp|SINE|Alu	12374	NM_006214	5264	Hs.498732	NM_001037537	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
chr6.3457216.+	chr6	3457216	3457217	+	0	NA	promoter-TSS (NM_015482)	promoter-TSS (NM_015482)	-423	NM_015482	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	"solute carrier family 22, member 23"	protein-coding
chr16.84670333.+	chr16	84670333	84670334	+	0	NA	Intergenic	AluY|SINE|Alu	-11798	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr2.85830139.+	chr2	85830139	85830140	+	0	NA	promoter-TSS (NM_001031738)	promoter-TSS (NM_001031738)	174	NR_046347	10713	Hs.654745	NM_001256725	ENSG00000168883	USP39	65K|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
chr3.123603069.-	chr3	123603069	123603070	-	0	NA	promoter-TSS (NM_053027)	promoter-TSS (NM_053027)	-80	NM_053026	4638	Hs.477375	NM_053025	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
chr7.156795112.+	chr7	156795112	156795113	+	0	NA	Intergenic	Intergenic	7017	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr1.114299608.+	chr1	114299608	114299609	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2169	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr7.63023262.-	chr7	63023262	63023263	-	0	NA	Intergenic	Intergenic	58206	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chrX.53930557.+	chrX	53930557	53930558	+	0	NA	Intergenic	AluSq2|SINE|Alu	139070	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr16.632079.+	chr16	632079	632080	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7278	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr5.133503216.-	chr5	133503216	133503217	-	0	NA	"intron (NM_170679, intron 2 of 5)"	MER2|DNA|TcMar-Tigger	-9508	NM_006930	6500	Hs.171626	NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
chr5.37382615.+	chr5	37382615	37382616	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3203	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr19.7098870.-	chr19	7098870	7098871	-	0	NA	Intergenic	CpG	-29399	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr5.43588016.-	chr5	43588016	43588017	-	0	NA	"intron (NR_073113, intron 1 of 2)"	AluY|SINE|Alu	14775	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
chr12.34354008.-	chr12	34354008	34354009	-	0	NA	Intergenic	AluSz|SINE|Alu	-178792	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.129354720.+	chr2	129354720	129354721	+	0	NA	Intergenic	Intergenic	-278549	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr1.149646740.-	chr1	149646740	149646741	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70287	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr16.73461650.-	chr16	73461650	73461651	-	0	NA	Intergenic	AluSg|SINE|Alu	-40946	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr17.2323441.+	chr17	2323441	2323442	+	0	NA	"exon (NM_024086, exon 10 of 10)"	"exon (NM_024086, exon 10 of 10)"	-4711	NR_028335	284009	Hs.632244	NR_028335		LOC284009	-	uncharacterized LOC284009	miscRNA
chr3.5229452.+	chr3	5229452	5229453	+	0	NA	promoter-TSS (NM_014674)	promoter-TSS (NM_014674)	93	NM_014674	9695	Hs.224616	NM_014674	ENSG00000134109	EDEM1	EDEM	"ER degradation enhancer, mannosidase alpha-like 1"	protein-coding
chr2.131551995.+	chr2	131551995	131551996	+	0	NA	Intergenic	AluY|SINE|Alu	38131	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr8.60674676.-	chr8	60674676	60674677	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519278	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr1.17298984.-	chr1	17298984	17298985	-	0	NA	"3' UTR (NM_014675, exon 37 of 37)"	"3' UTR (NM_014675, exon 37 of 37)"	-8189	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr21.45566127.-	chr21	45566127	45566128	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12633	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr17.45349548.-	chr17	45349548	45349549	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18340	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr1.38342283.+	chr1	38342283	38342284	+	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	-16991	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr14.103988549.-	chr14	103988549	103988550	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-647	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr19.4065757.-	chr19	4065757	4065758	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1059	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr8.22594665.-	chr8	22594665	22594666	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43850	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr19.39827556.-	chr19	39827556	39827557	-	0	NA	promoter-TSS (NM_004877)	promoter-TSS (NM_004877)	830	NM_004877	9535	Hs.5210	NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	"glia maturation factor, gamma"	protein-coding
chr1.6471016.+	chr1	6471016	6471017	+	0	NA	Intergenic	AluSz|SINE|Alu	8963	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr20.3185086.-	chr20	3185086	3185087	-	0	NA	"intron (NM_023935, intron 1 of 8)"	CpG	-209	NM_023935	65992	Hs.471975	NM_023935	ENSG00000198171	DDRGK1	C20orf116|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
chr14.105618897.-	chr14	105618897	105618898	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16264	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr19.43912440.-	chr19	43912440	43912441	-	0	NA	"intron (NM_031451, intron 4 of 8)"	CpG	6595	NM_001130011	83639	Hs.97978	NM_001130011	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|TES101RP	testis expressed 101	protein-coding
chr5.176292802.-	chr5	176292802	176292803	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33531	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr7.157234955.-	chr7	157234955	157234956	-	0	NA	Intergenic	CpG	-105244	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr8.144504242.-	chr8	144504242	144504243	-	0	NA	Intergenic	Intergenic	-8360	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr5.114712455.+	chr5	114712455	114712456	+	0	NA	Intergenic	AluYc3|SINE|Alu	-79997	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr19.11043352.-	chr19	11043352	11043353	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3928	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr2.101924993.-	chr2	101924993	101924994	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-185	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr2.189756584.-	chr2	189756584	189756585	-	0	NA	Intergenic	LTR12C|LTR|ERV1	82515	NM_000090	1281	Hs.443625	NM_000090	ENSG00000168542	COL3A1	EDS4A	"collagen, type III, alpha 1"	protein-coding
chr20.45162742.-	chr20	45162742	45162743	-	0	NA	Intergenic	MER52C|LTR|ERV1	-16471	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
chr17.79611154.+	chr17	79611154	79611155	+	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	1805	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr1.54966483.+	chr1	54966483	54966484	+	0	NA	Intergenic	AluSq|SINE|Alu	-47324	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr2.233477508.+	chr2	233477508	233477509	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6741	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr15.75840691.-	chr15	75840691	75840692	-	0	NA	"intron (NM_002833, intron 1 of 12)"	AluSq2|SINE|Alu	-30934	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	"protein tyrosine phosphatase, non-receptor type 9"	protein-coding
chr15.41613102.-	chr15	41613102	41613103	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11717	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr1.151473980.-	chr1	151473980	151473981	-	0	NA	Intergenic	AluSx|SINE|Alu	9882	NM_020770	57530	Hs.591464	NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
chr20.47088245.+	chr20	47088245	47088246	+	0	NA	Intergenic	Intergenic	99591	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr1.99544258.+	chr1	99544258	99544259	+	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	-73809	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr6.168352150.+	chr6	168352150	168352151	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25469	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr9.131293118.-	chr9	131293118	131293119	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21719	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr16.1959152.+	chr16	1959152	1959153	+	0	NA	Intergenic	Intergenic	9079	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr7.936437.-	chr7	936437	936438	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20246	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr21.32687775.+	chr21	32687775	32687776	+	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	243515	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr7.64198973.+	chr7	64198973	64198974	+	0	NA	Intergenic	SVA_D|Other|Other	-55793	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr6.7878906.+	chr6	7878906	7878907	+	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	31404	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr16.74363439.-	chr16	74363439	74363440	-	0	NA	Intergenic	Intergenic	-32766	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 7"	protein-coding
chr5.2860348.-	chr5	2860348	2860349	-	0	NA	Intergenic	Intergenic	-108086	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr10.35336393.-	chr10	35336393	35336394	-	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	-26865	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr1.21893049.-	chr1	21893049	21893050	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57191	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr11.84718577.+	chr11	84718577	84718578	+	0	NA	"intron (NM_001142699, intron 6 of 27)"	AluY|SINE|Alu	-84112	NM_001364	1740	Hs.367656	NM_001142699	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	"discs, large homolog 2 (Drosophila)"	protein-coding
chr19.875327.+	chr19	875327	875328	+	0	NA	"exon (NM_005481, exon 10 of 16)"	"exon (NM_005481, exon 10 of 16)"	15662	NM_001928	1675	Hs.155597	NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D (adipsin)	protein-coding
chr1.935670.+	chr1	935670	935671	+	0	NA	promoter-TSS (NM_001142467)	promoter-TSS (NM_001142467)	-118	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr14.22030006.+	chr14	22030006	22030007	+	0	NA	Intergenic	AluSx3|SINE|Alu	8869	NM_001005465	26533	Hs.554581	NM_001005465	ENSG00000169208	OR10G3	OR14-40	"olfactory receptor, family 10, subfamily G, member 3"	protein-coding
chr15.50450646.+	chr15	50450646	50450647	+	0	NA	Intergenic	SVA_D|Other|Other	-23747	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	"solute carrier family 27 (fatty acid transporter), member 2"	protein-coding
chr1.150467529.+	chr1	150467529	150467530	+	0	NA	"intron (NR_073513, intron 5 of 13)"	AluYf4|SINE|Alu	7689	NR_073514	80222	Hs.288974	NM_001271895	ENSG00000143374	TARS2	TARSL1|thrRS	"threonyl-tRNA synthetase 2, mitochondrial (putative)"	protein-coding
chr7.39989185.-	chr7	39989185	39989186	-	0	NA	promoter-TSS (NM_003718)	promoter-TSS (NM_003718)	774	NM_003718	8621	Hs.233552	NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHED|hCDK13	cyclin-dependent kinase 13	protein-coding
chr1.42522871.-	chr1	42522871	42522872	-	0	NA	Intergenic	AluY|SINE|Alu	21275	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr19.49865158.-	chr19	49865158	49865159	-	0	NA	promoter-TSS (NM_001256661)	promoter-TSS (NM_001256661)	406	NM_001256661	8463	Hs.515534	NM_001256658	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding
chr11.133763862.+	chr11	133763862	133763863	+	0	NA	Intergenic	AluY|SINE|Alu	4614	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr10.104255205.+	chr10	104255205	104255206	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7307	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr7.66607944.+	chr7	66607944	66607945	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28560	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr8.1390561.-	chr8	1390561	1390562	-	0	NA	Intergenic	Intergenic	58971	NM_001277161	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr9.95526668.-	chr9	95526668	95526669	-	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	-415	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr1.6132095.+	chr1	6132095	6132096	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25921	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr1.151741999.-	chr1	151741999	151742000	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2868	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr10.43563319.+	chr10	43563319	43563320	+	0	NA	Intergenic	Intergenic	-9198	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr8.143217990.-	chr8	143217990	143217991	-	0	NA	Intergenic	Intergenic	39710	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr1.224601828.-	chr1	224601828	224601829	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15815	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr20.14910663.-	chr20	14910663	14910664	-	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	502	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr2.242500457.-	chr2	242500457	242500458	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1899	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr12.132372579.+	chr12	132372579	132372580	+	0	NA	Intergenic	AluSx|SINE|Alu	-6700	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr16.24551052.-	chr16	24551052	24551053	-	0	NA	"5' UTR (NM_032626, exon 1 of 3)"	"5' UTR (NM_032626, exon 1 of 3)"	-144	NM_032626	5930	Hs.188553	NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	retinoblastoma binding protein 6	protein-coding
chr15.93372477.-	chr15	93372477	93372478	-	0	NA	Intergenic	AluSg|SINE|Alu	-33763	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr5.146832947.-	chr5	146832947	146832948	-	0	NA	"intron (NM_001197294, intron 1 of 13)"	CpG	-313	NM_001387	1809	Hs.519659	NM_001197294	ENSG00000113657	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase-like 3	protein-coding
chr15.73830930.-	chr15	73830930	73830931	-	0	NA	"intron (NM_001042367, intron 2 of 5)"	AluYk4|SINE|Alu	-94823	NM_012428	27020	Hs.187866	NM_001161363	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
chr3.98624732.+	chr3	98624732	98624733	+	0	NA	Intergenic	AluY|SINE|Alu	-4199	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr22.50617092.+	chr22	50617092	50617093	+	0	NA	"intron (NM_001160300, intron 2 of 3)"	CpG-18108	-7268	NM_025204	80305	Hs.741417	NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
chr13.20532459.-	chr13	20532459	20532460	-	0	NA	promoter-TSS (NM_003453)	promoter-TSS (NM_003453)	351	NM_003453	7750	Hs.507433	NM_001190964	ENSG00000121741	ZMYM2	FIM|MYM|RAMP|SCLL|ZNF198	"zinc finger, MYM-type 2"	protein-coding
chr10.43563291.-	chr10	43563291	43563292	-	0	NA	Intergenic	Intergenic	9226	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr11.113666010.-	chr11	113666010	113666011	-	0	NA	Intergenic	AluSx|SINE|Alu	-15492	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chrM.16402.+	chrM	16402	16403	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr12.66636789.-	chr12	66636789	66636790	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53811	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr4.188471164.-	chr4	188471164	188471165	-	0	NA	Intergenic	AluSg|SINE|Alu	44397	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr9.141111309.-	chr9	141111309	141111310	-	0	NA	"intron (NM_001145249, intron 3 of 6)"	AluSc8|SINE|Alu	-4672	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	"family with sequence similarity 157, member B"	protein-coding
chr1.53130019.+	chr1	53130019	53130020	+	0	NA	Intergenic	AluY|SINE|Alu	30953	NM_001042693	348378	Hs.424589	NM_182621	ENSG00000182183	FAM159A	PRO7171|WWLS2783	"family with sequence similarity 159, member A"	protein-coding
chr19.47364607.+	chr19	47364607	47364608	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10404	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr5.176292832.+	chr5	176292832	176292833	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33501	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr9.6807792.-	chr9	6807792	6807793	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50151	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chrX.12171171.+	chrX	12171171	12171172	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14586	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chr18.68698992.-	chr18	68698992	68698993	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-547200	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr20.5213537.+	chr20	5213537	5213538	+	0	NA	Intergenic	AluJr4|SINE|Alu	81478	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr3.49047698.-	chr3	49047698	49047699	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3061	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr19.1252708.+	chr19	1252708	1252709	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4156	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr13.112597794.-	chr13	112597794	112597795	-	0	NA	Intergenic	MIRc|SINE|MIR	124119	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr22.41215511.-	chr22	41215511	41215512	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	119	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr7.1286208.+	chr7	1286208	1286209	+	0	NA	Intergenic	CpG	13554	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr17.7951727.-	chr17	7951727	7951728	-	0	NA	"exon (NM_001039131, exon 12 of 12)"	"exon (NM_001039131, exon 12 of 12)"	-9369	NM_001141	247	Hs.111256	NM_001039130	ENSG00000179593	ALOX15B	15-LOX-2	"arachidonate 15-lipoxygenase, type B"	protein-coding
chr2.87655679.+	chr2	87655679	87655680	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-99295	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr13.77954520.+	chr13	77954520	77954521	+	0	NA	Intergenic	AluSc|SINE|Alu	-53343	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr1.197234038.+	chr1	197234038	197234039	+	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	-3296	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr19.5409965.-	chr19	5409965	5409966	-	0	NA	Intergenic	AluY|SINE|Alu	45461	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr4.55034945.+	chr4	55034945	55034946	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60319	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr8.99627106.+	chr8	99627106	99627107	+	0	NA	"intron (NM_001256313, intron 4 of 8)"	L1PA2|LINE|L1	187856	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr20.33283584.-	chr20	33283584	33283585	-	0	NA	Intergenic	AluY|SINE|Alu	8564	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr2.242549380.-	chr2	242549380	242549381	-	0	NA	"intron (NM_015963, intron 2 of 5)"	CpG	-7536	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr20.62479224.+	chr20	62479224	62479225	+	0	NA	Intergenic	Intergenic	-13342	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr1.11960172.+	chr1	11960172	11960173	+	0	NA	Intergenic	AluSc8|SINE|Alu	26313	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
chr3.112807965.-	chr3	112807965	112807966	-	0	NA	Intergenic	AluYc|SINE|Alu	69410	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr16.71414365.+	chr16	71414365	71414366	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21749	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr13.45131225.+	chr13	45131225	45131226	+	0	NA	"intron (NM_183422, intron 1 of 2)"	AluSp|SINE|Alu	-18807	NR_038381	641467	Hs.624196	NR_038381		TSC22D1-AS1	-	TSC22D1 antisense RNA 1	miscRNA
chr1.87839701.-	chr1	87839701	87839702	-	0	NA	Intergenic	AluY|SINE|Alu	2363	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LOC100505768	-	uncharacterized LOC100505768	miscRNA
chr7.91257047.+	chr7	91257047	91257048	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252969	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr1.26591562.+	chr1	26591562	26591563	+	0	NA	"intron (NM_022778, intron 7 of 13)"	AluSx1|SINE|Alu	-14651	NM_031286	83442	Hs.109051	NM_031286		SH3BGRL3	SH3BP-1|TIP-B1	SH3 domain binding glutamic acid-rich protein like 3	protein-coding
chr7.6677418.-	chr7	6677418	6677419	-	0	NA	Intergenic	CpG	-21891	NM_017560	54753	Hs.592170	NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
chr5.141558662.+	chr5	141558662	141558663	+	0	NA	Intergenic	AluSg|SINE|Alu	70338	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr3.128362566.-	chr3	128362566	128362567	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7153	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr1.171662965.+	chr1	171662965	171662966	+	0	NA	Intergenic	SVA_C|Other|Other	-41192	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr10.6985552.+	chr10	6985552	6985553	+	0	NA	Intergenic	AluSx1|SINE|Alu	163992	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr2.128431283.+	chr2	128431283	128431284	+	0	NA	"exon (NM_001136037, exon 2 of 11)"	"exon (NM_001136037, exon 2 of 11)"	1481	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr12.79439086.+	chr12	79439086	79439087	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-347	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr19.15037601.-	chr19	15037601	15037602	-	0	NA	Intergenic	AluSp|SINE|Alu	14700	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr6.167607698.-	chr6	167607698	167607699	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23617	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr7.156351717.-	chr7	156351717	156351718	-	0	NA	Intergenic	Intergenic	-18532	NR_024119	64433	Hs.404170	NR_024119		LINC00244	C7orf4|NCRNA00244	long intergenic non-protein coding RNA 244	miscRNA
chr10.35598877.-	chr10	35598877	35598878	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	26925	NM_145012	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr8.6812577.+	chr8	6812577	6812578	+	0	NA	Intergenic	AluSp|SINE|Alu	-3456	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr2.239047374.-	chr2	239047374	239047375	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-11	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chrX.29933147.+	chrX	29933147	29933148	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300528	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr22.31477371.+	chr22	31477371	31477372	+	0	NA	promoter-TSS (NM_006932)	promoter-TSS (NM_006932)	89	NM_134270	6525	Hs.149098	NM_001207017	ENSG00000183963	SMTN	-	smoothelin	protein-coding
chr6.149638373.-	chr6	149638373	149638374	-	0	NA	Intergenic	CpG	1063	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr17.7246099.+	chr17	7246099	7246100	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6251	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chrX.70493594.+	chrX	70493594	70493595	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9448	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr1.6094757.+	chr1	6094757	6094758	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	409	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr11.69189603.+	chr11	69189603	69189604	+	0	NA	Intergenic	Intergenic	127981	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr5.18111522.-	chr5	18111522	18111523	-	0	NA	Intergenic	AluY|SINE|Alu	724103	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr12.34492661.+	chr12	34492661	34492662	+	0	NA	Intergenic	GSATII|Satellite|centr	317445	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr1.2498985.+	chr1	2498985	2498986	+	0	NA	Intergenic	Intergenic	-10535	NR_037844	100133445	Hs.602652	NR_037844		LOC100133445	-	uncharacterized LOC100133445	miscRNA
chr2.120775530.+	chr2	120775530	120775531	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4745	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr19.52097714.+	chr19	52097714	52097715	+	0	NA	promoter-TSS (NR_034159)	promoter-TSS (NR_034159)	-81	NR_034159	729975	Hs.716785	NR_034159	ENSG00000167765	FLJ30403	-	uncharacterized LOC729975	miscRNA
chr5.156887129.+	chr5	156887129	156887130	+	0	NA	"5' UTR (NM_001172292, exon 1 of 5)"	"5' UTR (NM_001172292, exon 1 of 5)"	102	NM_001172292	348938	Hs.4285	NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN	NIPA-like domain containing 4	protein-coding
chr12.122667627.+	chr12	122667627	122667628	+	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	-40	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr16.69735109.+	chr16	69735109	69735110	+	0	NA	"3' UTR (NM_001113178, exon 15 of 15)"	"3' UTR (NM_001113178, exon 15 of 15)"	25424	NM_001025434	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	"NAD(P)H dehydrogenase, quinone 1"	protein-coding
chr10.134411390.-	chr10	134411390	134411391	-	0	NA	"intron (NM_005539, intron 1 of 15)"	CpG	-60037	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr16.4818960.+	chr16	4818960	4818961	+	0	NA	Intergenic	CpG	-1794	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr20.61436419.+	chr20	61436419	61436420	+	0	NA	"intron (NM_007346, intron 1 of 6)"	CpG	242	NM_007346	11054	Hs.67896	NM_007346	ENSG00000060491	OGFR	-	opioid growth factor receptor	protein-coding
chr9.139119888.+	chr9	139119888	139119889	+	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	17799	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr7.61969457.+	chr7	61969457	61969458	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	794977	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr17.744646.+	chr17	744646	744647	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22705	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr7.64114722.-	chr7	64114722	64114723	-	0	NA	Intergenic	AluSx|SINE|Alu	11789	NM_016220	51427	Hs.732661	NM_001013746	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
chr11.59317984.-	chr11	59317984	59317985	-	0	NA	Intergenic	Intergenic	-35598	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	"olfactory receptor, family 4, subfamily D, member 9"	protein-coding
chr2.160347994.-	chr2	160347994	160347995	-	0	NA	"intron (NM_013450, intron 2 of 36)"	AluYa5|SINE|Alu	-125065	NM_013450	29994	Hs.470369	NM_013450	ENSG00000123636	BAZ2B	WALp4	"bromodomain adjacent to zinc finger domain, 2B"	protein-coding
chrX.144902999.-	chrX	144902999	144903000	-	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	-133	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr15.57662564.+	chr15	57662564	57662565	+	0	NA	Intergenic	AluSx|SINE|Alu	-6139	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr3.129867986.-	chr3	129867986	129867987	-	0	NA	Intergenic	HERVE-int|LTR|ERV1	37710	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr7.26294426.-	chr7	26294426	26294427	-	0	NA	Intergenic	AluSx1|SINE|Alu	37089	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr7.61969435.-	chr7	61969435	61969436	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-794999	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr13.31023958.-	chr13	31023958	31023959	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16123	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr13.112769131.+	chr13	112769131	112769132	+	0	NA	Intergenic	L2a|LINE|L2	47218	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr1.200904577.+	chr1	200904577	200904578	+	0	NA	Intergenic	AluSx|SINE|Alu	40628	NM_001142569	55765	Hs.518997	NM_001142569	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
chr16.341064.+	chr16	341064	341065	+	0	NA	"intron (NM_181050, intron 8 of 9)"	"intron (NM_181050, intron 8 of 9)"	7946	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr14.55349964.-	chr14	55349964	55349965	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5053	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr7.158268196.-	chr7	158268196	158268197	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57309	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chrX.152916304.-	chrX	152916304	152916305	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8407	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr20.55247382.+	chr20	55247382	55247383	+	0	NA	Intergenic	AluSz6|SINE|Alu	43024	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr7.30556879.-	chr7	30556879	30556880	-	0	NA	Intergenic	AluY|SINE|Alu	12422	NM_001199817	79017	Hs.530024	NM_001199815	ENSG00000006625	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
chr10.42644597.-	chr10	42644597	42644598	-	0	NA	Intergenic	Intergenic	-218896	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr2.203729829.-	chr2	203729829	203729830	-	0	NA	"intron (NM_138468, intron 2 of 13)"	AluSx|SINE|Alu	-6366	NM_178231	130026	Hs.516629	NM_138468		ICA1L	ALS2CR14|ALS2CR15	"islet cell autoantigen 1,69kDa-like"	protein-coding
chr6.125475735.+	chr6	125475735	125475736	+	0	NA	"intron (NM_001003395, intron 1 of 6)"	GC_rich|Low_complexity|Low_complexity	315	NM_001003395	7164	Hs.591347	NM_001003395	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
chr1.233464490.-	chr1	233464490	233464491	-	0	NA	"exon (NM_032435, exon 1 of 10)"	"exon (NM_032435, exon 1 of 10)"	-976	NM_032435	84451	Hs.547779	NM_032435	ENSG00000143674	KIAA1804	MLK4|RP5-862P8.2|dJ862P8.3	mixed lineage kinase 4	protein-coding
chr5.1038038.-	chr5	1038038	1038039	-	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	-25051	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr11.64138393.-	chr11	64138393	64138394	-	0	NA	"intron (NM_003942, intron 16 of 16)"	AluSg|SINE|Alu	-2319	NR_031602	100302280		NR_031602		MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	miscRNA
chr7.462600.-	chr7	462600	462601	-	0	NA	Intergenic	MIR|SINE|MIR	-43209	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr16.78590750.-	chr16	78590750	78590751	-	0	NA	"intron (NM_016373, intron 8 of 8)"	AluSq|SINE|Alu	-457423	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr2.47660753.+	chr2	47660753	47660754	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30547	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr19.50528488.+	chr19	50528488	50528489	+	0	NA	promoter-TSS (NM_015428)	promoter-TSS (NM_015428)	317	NM_016440	51231	Hs.443330	NM_001025778	ENSG00000105053	VRK3	-	vaccinia related kinase 3	protein-coding
chr12.96794054.+	chr12	96794054	96794055	+	0	NA	"5' UTR (NM_001170464, exon 1 of 16)"	"5' UTR (NM_001170464, exon 1 of 16)"	312	NM_002595	5128	Hs.506415	NM_001170464	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
chr10.14851288.+	chr10	14851288	14851289	+	0	NA	Intergenic	AluY|SINE|Alu	28695	NM_001029954	441549	Hs.559067	NM_001029954		CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
chr1.183257536.+	chr1	183257536	183257537	+	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	16473	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr12.34501249.+	chr12	34501249	34501250	+	0	NA	Intergenic	GSATII|Satellite|centr	326033	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.52661816.-	chr19	52661816	52661817	-	0	NA	"intron (NM_001102657, intron 4 of 4)"	AluSg|SINE|Alu	-13080	NM_001102657	162962	Hs.631584	NM_001102657	ENSG00000196267	ZNF836	-	zinc finger protein 836	protein-coding
chr8.43413744.+	chr8	43413744	43413745	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	266159	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr5.178562800.+	chr5	178562800	178562801	+	0	NA	"intron (NM_014244, intron 13 of 21)"	MIR|SINE|MIR	75193	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr19.14156306.-	chr19	14156306	14156307	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13665	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr13.82029584.-	chr13	82029584	82029585	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114498	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr1.212898532.+	chr1	212898532	212898533	+	0	NA	TTS (NM_001042549)	TTS (NM_001042549)	-25205	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr4.67722943.-	chr4	67722943	67722944	-	0	NA	Intergenic	AluY|SINE|Alu	-688313	NM_001812	1060	Hs.479867	NM_001812	ENSG00000145241	CENPC1	CENP-C|CENPC|MIF2|hcp-4	centromere protein C 1	protein-coding
chr6.8388541.-	chr6	8388541	8388542	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47253	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr2.239047371.-	chr2	239047371	239047372	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-8	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr2.7148781.-	chr2	7148781	7148782	-	0	NA	"intron (NM_014746, intron 3 of 8)"	"intron (NM_014746, intron 3 of 8)"	89968	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	miscRNA
chr20.45571662.+	chr20	45571662	45571663	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48399	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr6.170055419.+	chr6	170055419	170055420	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46740	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr2.240371799.-	chr2	240371799	240371800	-	0	NA	Intergenic	SVA_D|Other|Other	49156	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr5.123857454.-	chr5	123857454	123857455	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-223351	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
chr5.27408071.+	chr5	27408071	27408072	+	0	NA	Intergenic	AluY|SINE|Alu	-64328	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr19.1819076.+	chr19	1819076	1819077	+	0	NA	"exon (NM_020695, exon 8 of 16)"	"exon (NM_020695, exon 8 of 16)"	-2839	NR_031730	100302210		NR_031730		MIR1909	MIRN1909|hsa-mir-1909	microRNA 1909	miscRNA
chr20.61520869.+	chr20	61520869	61520870	+	0	NA	"3' UTR (NM_001193370, exon 15 of 15)"	"3' UTR (NM_001193370, exon 15 of 15)"	-27754	NM_006602	10732	Hs.126248	XM_003960788	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|bHLHe82	transcription factor-like 5 (basic helix-loop-helix)	protein-coding
chrX.69569696.+	chrX	69569696	69569697	+	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	59817	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr1.1564473.-	chr1	1564473	1564474	-	0	NA	"intron (NM_001170688, intron 15 of 18)"	CpG	3087	NM_006983	8510	Hs.192316	NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
chr19.18084690.+	chr19	18084690	18084691	+	0	NA	"5' UTR (NM_002248, exon 3 of 11)"	"5' UTR (NM_002248, exon 3 of 11)"	22579	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr13.21644871.-	chr13	21644871	21644872	-	0	NA	Intergenic	AluSx|SINE|Alu	9149	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr1.235668419.-	chr1	235668419	235668420	-	0	NA	promoter-TSS (NM_152490)	promoter-TSS (NM_152490)	638	NM_152490	148789	Hs.743413	NM_001277155		B3GALNT2	B3GalNAc-T2	"beta-1,3-N-acetylgalactosaminyltransferase 2"	protein-coding
chr18.70912370.+	chr18	70912370	70912371	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19363	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr4.8913705.+	chr4	8913705	8913706	+	0	NA	Intergenic	Intergenic	-37772	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr10.123791076.+	chr10	123791076	123791077	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42387	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr9.34329786.-	chr9	34329786	34329787	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-282	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr2.38595079.+	chr2	38595079	38595080	+	0	NA	"intron (NM_022374, intron 1 of 12)"	"intron (NM_022374, intron 1 of 12)"	9353	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr2.121010175.+	chr2	121010175	121010176	+	0	NA	promoter-TSS (NM_002881)	promoter-TSS (NM_002881)	-239	NM_002881	5899	Hs.469820	NM_002881	ENSG00000144118	RALB	-	v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein)	protein-coding
chr5.64597683.-	chr5	64597683	64597684	-	0	NA	"intron (NM_197941, intron 9 of 24)"	AluSx|SINE|Alu	-180021	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	"ADAM metallopeptidase with thrombospondin type 1 motif, 6"	protein-coding
chr1.101426802.+	chr1	101426802	101426803	+	0	NA	"intron (NM_133496, intron 8 of 10)"	AluY|SINE|Alu	64560	NM_015958	51611	Hs.440776	NM_001077394		DPH5	CGI-30|HSPC143|NPD015	DPH5 homolog (S. cerevisiae)	protein-coding
chr5.1494524.+	chr5	1494524	1494525	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29552	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr20.50383768.-	chr20	50383768	50383769	-	0	NA	"intron (NM_006045, intron 1 of 27)"	CpG	-1140	NM_006045	10079	Hs.743248	NM_006045	ENSG00000054793	ATP9A	ATPIIA	"ATPase, class II, type 9A"	protein-coding
chr5.14460436.+	chr5	14460436	14460437	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121455	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr2.218944863.-	chr2	218944863	218944864	-	0	NA	"intron (NR_034176, intron 11 of 13)"	"intron (NR_034176, intron 11 of 13)"	-11125	NM_198483	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
chr1.240947663.+	chr1	240947663	240947664	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172201	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr5.179373614.-	chr5	179373614	179373615	-	0	NA	Intergenic	AluY|SINE|Alu	38758	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr7.6454061.+	chr7	6454061	6454062	+	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	33582	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr14.51521288.-	chr14	51521288	51521289	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluJb|SINE|Alu	-41134	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr12.34492649.-	chr12	34492649	34492650	-	0	NA	Intergenic	GSATII|Satellite|centr	-317433	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr17.80832429.-	chr17	80832429	80832430	-	0	NA	"intron (NM_005993, intron 14 of 38)"	"intron (NM_005993, intron 14 of 38)"	34498	NM_024702	79755	Hs.653124	NM_024702	ENSG00000141579	ZNF750	ZFP750	zinc finger protein 750	protein-coding
chr8.40806459.+	chr8	40806459	40806460	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-51116	NM_001135731	79698	Hs.591850	NM_001135731	ENSG00000165061	ZMAT4	-	"zinc finger, matrin-type 4"	protein-coding
chr2.25142807.-	chr2	25142807	25142808	-	0	NA	promoter-TSS (NM_004036)	promoter-TSS (NM_004036)	752	NM_004036	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC3	adenylate cyclase 3	protein-coding
chr4.103422393.-	chr4	103422393	103422394	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	93	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr7.2933086.-	chr7	2933086	2933087	-	0	NA	Intergenic	AluSx1|SINE|Alu	49127	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr10.88411558.-	chr10	88411558	88411559	-	0	NA	Intergenic	Intergenic	2756	NM_001030015	94233	Hs.283922	NM_001030015	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
chr1.79749354.-	chr1	79749354	79749355	-	0	NA	Intergenic	AluSx|SINE|Alu	276859	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr3.77641988.+	chr3	77641988	77641989	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494825	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr19.45524645.-	chr19	45524645	45524646	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17653	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr9.132020862.-	chr9	132020862	132020863	-	0	NA	Intergenic	CpG	62433	NM_001012715	414318	Hs.449434	NM_001012715		C9orf106	bA65J3.5	chromosome 9 open reading frame 106	protein-coding
chrX.46794121.+	chrX	46794121	46794122	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22253	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr12.6514951.-	chr12	6514951	6514952	-	0	NA	Intergenic	AluSx|SINE|Alu	-21752	NM_002342	4055	Hs.1116	NM_001270987	ENSG00000111321	LTBR	CD18|D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	"lymphotoxin beta receptor (TNFR superfamily, member 3)"	protein-coding
chr14.78273473.-	chr14	78273473	78273474	-	0	NA	"intron (NM_001142545, intron 1 of 9)"	AluYa5|SINE|Alu	-7047	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chrX.21676561.+	chrX	21676561	21676562	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-113	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr1.204948610.+	chr1	204948610	204948611	+	0	NA	"exon (NM_015090, exon 18 of 27)"	"exon (NM_015090, exon 18 of 27)"	35256	NM_001160331	23114	Hs.13349	NM_001005388	ENSG00000163531	NFASC	NF|NRCAML	neurofascin	protein-coding
chr9.88491259.+	chr9	88491259	88491260	+	0	NA	Intergenic	AluYc|SINE|Alu	-64798	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr1.24513591.+	chr1	24513591	24513592	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	174	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr8.22594709.-	chr8	22594709	22594710	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43894	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr4.45824712.-	chr4	45824712	45824713	-	0	NA	Intergenic	AluY|SINE|Alu	-301370	NM_173536	2565	Hs.375051	NM_173536	ENSG00000163285	GABRG1	-	"gamma-aminobutyric acid (GABA) A receptor, gamma 1"	protein-coding
chr2.109090607.-	chr2	109090607	109090608	-	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	-25030	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr22.38166143.-	chr22	38166143	38166144	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	-23902	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr19.49186331.-	chr19	49186331	49186332	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10067	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr8.104645081.-	chr8	104645081	104645082	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132105	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr9.120507384.+	chr9	120507384	120507385	+	0	NA	Intergenic	CpG	40931	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr8.143698176.+	chr8	143698176	143698177	+	0	NA	Intergenic	Intergenic	-2343	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr10.35559772.+	chr10	35559772	35559773	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23819	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr2.162164868.+	chr2	162164868	162164869	+	0	NA	promoter-TSS (NM_005805)	promoter-TSS (NM_005805)	82	NM_005805	10213	Hs.740477	NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 14"	protein-coding
chr7.100436464.+	chr7	100436464	100436465	+	0	NA	Intergenic	LTR2|LTR|ERV1	-11321	NM_004444	2050	Hs.437008	NM_004444	ENSG00000196411	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
chr16.67063282.-	chr16	67063282	67063283	-	0	NA	"5' UTR (NM_001755, exon 1 of 6)"	"5' UTR (NM_001755, exon 1 of 6)"	-232	NM_022845	865	Hs.460988	NM_001755	ENSG00000067955	CBFB	PEBP2B	"core-binding factor, beta subunit"	protein-coding
chr4.103422397.+	chr4	103422397	103422398	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-89	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr2.100856244.-	chr2	100856244	100856245	-	0	NA	Intergenic	Intergenic	-82951	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
chr18.77627571.+	chr18	77627571	77627572	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3903	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr3.36938514.+	chr3	36938514	36938515	+	0	NA	"intron (NM_014831, intron 3 of 22)"	AluSx|SINE|Alu	48034	NM_014831	9881	Hs.170999	NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
chr14.50066001.-	chr14	50066001	50066002	-	0	NA	"intron (NR_037792, intron 1 of 5)"	CpG	-586	NR_037792	122769	Hs.451090	NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
chr6.144923559.+	chr6	144923559	144923560	+	0	NA	"intron (NM_007124, intron 50 of 73)"	AluSx3|SINE|Alu	310686	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr17.18179055.+	chr17	18179055	18179056	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14631	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr16.60255855.+	chr16	60255855	60255856	+	0	NA	Intergenic	AluSc8|SINE|Alu	-466760	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr18.73357753.-	chr18	73357753	73357754	-	0	NA	Intergenic	L2|LINE|L2	218164	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr20.43439774.-	chr20	43439774	43439775	-	0	NA	promoter-TSS (NM_001205317)	promoter-TSS (NM_001205317)	795	NM_001205317	140730	Hs.517065	NM_001205317	ENSG00000101098	RIMS4	C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma	regulating synaptic membrane exocytosis 4	protein-coding
chr1.4142568.+	chr1	4142568	4142569	+	0	NA	Intergenic	Intergenic	141896	NR_040065	728716	Hs.668359	NR_040065		LOC728716	-	uncharacterized LOC728716	miscRNA
chr3.14349487.+	chr3	14349487	14349488	+	0	NA	Intergenic	Intergenic	-94619	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr6.46742370.-	chr6	46742370	46742371	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18724	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr4.123063364.+	chr4	123063364	123063365	+	0	NA	Intergenic	AluSg7|SINE|Alu	-28394	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr12.9892352.-	chr12	9892352	9892353	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6457	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr20.24450181.+	chr20	24450181	24450182	+	0	NA	"5' UTR (NM_024893, exon 1 of 4)"	"5' UTR (NM_024893, exon 1 of 4)"	346	NM_024893	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
chr3.22843195.+	chr3	22843195	22843196	+	0	NA	Intergenic	L1PA2|LINE|L1	-401589	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr2.240187906.-	chr2	240187906	240187907	-	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	39251	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr5.17924814.+	chr5	17924814	17924815	+	0	NA	Intergenic	AluY|SINE|Alu	-537395	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr11.86267673.+	chr11	86267673	86267674	+	0	NA	"exon (NM_001161586, exon 4 of 15)"	"exon (NM_001161586, exon 4 of 15)"	115567	NM_001014811	10873	Hs.199743	NM_001014811	ENSG00000151376	ME3	NADP-ME	"malic enzyme 3, NADP(+)-dependent, mitochondrial"	protein-coding
chr19.18416249.-	chr19	18416249	18416250	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17752	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr5.1598415.+	chr5	1598415	1598416	+	0	NA	"non-coding (NR_003713, exon 4 of 4)"	"non-coding (NR_003713, exon 4 of 4)"	-3769	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3"	pseudo
chr16.2839397.+	chr16	2839397	2839398	+	0	NA	Intergenic	AluSc|SINE|Alu	-2689	NM_152891	260429	Hs.280658	NM_152891	ENSG00000103355	PRSS33	EOS	"protease, serine, 33"	protein-coding
chr10.108027479.-	chr10	108027479	108027480	-	0	NA	Intergenic	LTR1D|LTR|ERV1	-896987	NM_001206570	114815	Hs.591915	NM_001013031	ENSG00000108018	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chr10.7542195.-	chr10	7542195	7542196	-	0	NA	Intergenic	AluSc8|SINE|Alu	88747	NM_001029880	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
chr18.55445746.+	chr18	55445746	55445747	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24581	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr10.45406216.+	chr10	45406216	45406217	+	0	NA	promoter-TSS (NM_001123376)	promoter-TSS (NM_001123376)	-548	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr12.126287177.+	chr12	126287177	126287178	+	0	NA	Intergenic	AluY|SINE|Alu	180743	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chr9.98589369.-	chr9	98589369	98589370	-	0	NA	"intron (NR_023390, intron 2 of 2)"	"intron (NR_023390, intron 2 of 2)"	48531	NM_001010895	375748	Hs.732570	NM_001034155	ENSG00000182150	ERCC6L2	C9orf102|RAD26L|SR278	"excision repair cross-complementing rodent repair deficiency, complementation group 6-like 2"	protein-coding
chr16.77246818.-	chr16	77246818	77246819	-	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	-13469	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr4.69790982.-	chr4	69790982	69790983	-	0	NA	Intergenic	AluY|SINE|Alu	-26527	NR_024010	79799	Hs.122583	NM_024743	ENSG00000135220	UGT2A3	-	"UDP glucuronosyltransferase 2 family, polypeptide A3"	protein-coding
chr14.102954975.-	chr14	102954975	102954976	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21153	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr6.41515962.+	chr6	41515962	41515963	+	0	NA	"intron (NM_001012427, intron 1 of 16)"	CpG	1798	NM_138457	116113	Hs.131436	NM_001012426	ENSG00000137166	FOXP4	hFKHLA	forkhead box P4	protein-coding
chr7.21498055.+	chr7	21498055	21498056	+	0	NA	"intron (NM_003112, intron 3 of 5)"	AluSx1|SINE|Alu	30366	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr16.1332169.-	chr16	1332169	1332170	-	0	NA	Intergenic	AluSx|SINE|Alu	-25896	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr2.905557.+	chr2	905557	905558	+	0	NA	Intergenic	Intergenic	-40997	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr16.89034190.+	chr16	89034190	89034191	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9314	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr12.8831002.-	chr12	8831002	8831003	-	0	NA	Intergenic	AluSp|SINE|Alu	15569	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr17.74707118.-	chr17	74707118	74707119	-	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	62	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr13.96681130.+	chr13	96681130	96681131	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24606	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr18.11959895.+	chr18	11959895	11959896	+	0	NA	Intergenic	SVA_D|Other|Other	-21532	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr20.33005268.+	chr20	33005268	33005269	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48862	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr1.183892660.-	chr1	183892660	183892661	-	0	NA	"intron (NM_015149, intron 18 of 18)"	"intron (NM_015149, intron 18 of 18)"	-114203	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr7.5345663.-	chr7	5345663	5345664	-	0	NA	TTS (NM_001080495)	TTS (NM_001080495)	-23102	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr4.3270623.-	chr4	3270623	3270624	-	0	NA	Intergenic	Intergenic	-19856	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
chr3.37052296.+	chr3	37052296	37052297	+	0	NA	"intron (NM_001258271, intron 6 of 16)"	AluSx|SINE|Alu	17028	NM_001167618	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	"mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)"	protein-coding
chr19.2307946.-	chr19	2307946	2307947	-	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	-210	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr14.102109478.+	chr14	102109478	102109479	+	0	NA	Intergenic	AluY|SINE|Alu	81790	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr13.59346905.-	chr13	59346905	59346906	-	0	NA	Intergenic	AluY|SINE|Alu	-1141116	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr7.64198979.+	chr7	64198979	64198980	+	0	NA	Intergenic	SVA_D|Other|Other	-55787	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr17.38239325.+	chr17	38239325	38239326	+	0	NA	"intron (NM_199334, intron 4 of 8)"	AluY|SINE|Alu	17653	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr5.91967059.-	chr5	91967059	91967060	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-939440	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr5.134045729.+	chr5	134045729	134045730	+	0	NA	"intron (NM_021982, intron 18 of 22)"	AluSx|SINE|Alu	-28441	NM_001745	819	Hs.529846	NM_001745	ENSG00000164615	CAMLG	CAML	calcium modulating ligand	protein-coding
chr3.47744702.-	chr3	47744702	47744703	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78703	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr1.242294497.+	chr1	242294497	242294498	+	0	NA	"intron (NM_152666, intron 6 of 10)"	AluSc|SINE|Alu	-132112	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr7.99630210.-	chr7	99630210	99630211	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	-16991	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr2.38191071.-	chr2	38191071	38191072	-	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	-13475	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr1.2887342.-	chr1	2887342	2887343	-	0	NA	Intergenic	Intergenic	50704	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr19.58310333.-	chr19	58310333	58310334	-	0	NA	Intergenic	AluY|SINE|Alu	-15948	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr12.131127791.+	chr12	131127791	131127792	+	0	NA	Intergenic	Intergenic	-125381	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr16.58880276.-	chr16	58880276	58880277	-	0	NA	Intergenic	SVA_D|Other|Other	112030	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr2.92172363.-	chr2	92172363	92172364	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-43204	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr19.35418176.-	chr19	35418176	35418177	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-369	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr11.101908828.+	chr11	101908828	101908829	+	0	NA	Intergenic	AluYa5|SINE|Alu	-9341	NM_001195005	85016	Hs.98328	NM_001195005	ENSG00000137691	C11orf70	-	chromosome 11 open reading frame 70	protein-coding
chr12.94947000.+	chr12	94947000	94947001	+	0	NA	Intergenic	AluSx|SINE|Alu	-8565	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr9.6807790.-	chr9	6807790	6807791	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50149	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr16.77246830.-	chr16	77246830	77246831	-	0	NA	"3' UTR (NM_001129979, exon 11 of 11)"	"3' UTR (NM_001129979, exon 11 of 11)"	-13481	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr10.25870150.-	chr10	25870150	25870151	-	0	NA	"intron (NM_020752, intron 7 of 10)"	AluYb8|SINE|Alu	352852	NM_017433	53904	Hs.662630	NM_017433	ENSG00000095777	MYO3A	DFNB30	myosin IIIA	protein-coding
chr4.989196.-	chr4	989196	989197	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1972	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr2.30248634.+	chr2	30248634	30248635	+	0	NA	Intergenic	AluY|SINE|Alu	-104157	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr17.18178998.+	chr17	18178998	18178999	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14574	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr1.242178346.+	chr1	242178346	242178347	+	0	NA	Intergenic	AluY|SINE|Alu	-15961	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr2.60946428.-	chr2	60946428	60946429	-	0	NA	Intergenic	AluY|SINE|Alu	36937	NM_022894	64895	Hs.387471	NM_022894		PAPOLG	-	poly(A) polymerase gamma	protein-coding
chr2.38595145.+	chr2	38595145	38595146	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9287	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chrX.43991581.-	chrX	43991581	43991582	-	0	NA	Intergenic	AluY|SINE|Alu	158660	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
chr5.74567378.+	chr5	74567378	74567379	+	0	NA	Intergenic	SVA_D|Other|Other	-34675	NM_001164443	256006	Hs.482533	NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
chr7.148597577.+	chr7	148597577	148597578	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16136	NM_001203247	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chrY.13489483.-	chrY	13489483	13489484	-	0	NA	Intergenic	LSAU|Satellite|Satellite	-1043906	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr3.177829363.+	chr3	177829363	177829364	+	0	NA	Intergenic	AluSx|SINE|Alu	-307626	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	KCNMB2-IT1	-	KCNMB2 intronic transcript 1 (non-protein coding)	miscRNA
chrX.153657091.+	chrX	153657091	153657092	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	113	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr2.241622510.-	chr2	241622510	241622511	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	193	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr2.20424060.-	chr2	20424060	20424061	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-867	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr8.11312286.+	chr8	11312286	11312287	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11990	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr17.57884657.+	chr17	57884657	57884658	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33970	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr6.70692681.+	chr6	70692681	70692682	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116233	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr18.2938272.-	chr18	2938272	2938273	-	0	NA	"intron (NM_014646, intron 6 of 19)"	AluSx1|SINE|Alu	-8349	NR_026659	727896	Hs.673126	NR_026659		LOC727896	-	cysteine and histidine-rich domain (CHORD) containing 1 pseudogene	pseudo
chr22.38799972.+	chr22	38799972	38799973	+	0	NA	Intergenic	Intergenic	-5041	NR_002821	400927	Hs.720223	NR_002821		LOC400927	-	TPTE and PTEN homologous inositol lipid phosphatase pseudogene	pseudo
chr4.86391871.+	chr4	86391871	86391872	+	0	NA	Intergenic	AluY|SINE|Alu	-4413	NM_001025616	83478	Hs.444229	NM_001025616	ENSG00000138639	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
chr2.241622511.-	chr2	241622511	241622512	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	194	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr9.10786969.+	chr9	10786969	10786970	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174246	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr21.32916810.-	chr21	32916810	32916811	-	0	NA	"intron (NM_003253, intron 1 of 28)"	AluSx1|SINE|Alu	-14480	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr5.9328758.-	chr5	9328758	9328759	-	0	NA	"intron (NM_003966, intron 4 of 22)"	AluSq|SINE|Alu	-217475	NM_003966	9037	Hs.27621	NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A"	protein-coding
chr14.105134407.-	chr14	105134407	105134408	-	0	NA	Intergenic	AluSz|SINE|Alu	-9679	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr2.70416491.-	chr2	70416491	70416492	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1660	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr7.66137169.-	chr7	66137169	66137170	-	0	NA	Intergenic	AluY|SINE|Alu	-43301	NM_001167961	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr5.178157724.+	chr5	178157724	178157725	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-21	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr15.91599291.+	chr15	91599291	91599292	+	0	NA	Intergenic	Intergenic	-33458	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr1.238519124.-	chr1	238519124	238519125	-	0	NA	Intergenic	AluSg|SINE|Alu	-130193	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LOC339535	-	uncharacterized LOC339535	miscRNA
chr1.236252175.-	chr1	236252175	236252176	-	0	NA	Intergenic	AluY|SINE|Alu	23694	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr9.14963541.+	chr9	14963541	14963542	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-29784	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
chr22.46936388.+	chr22	46936388	46936389	+	0	NA	Intergenic	AluSx|SINE|Alu	-3321	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr1.24090524.+	chr1	24090524	24090525	+	0	NA	"intron (NR_038280, intron 3 of 3)"	AluSz|SINE|Alu	14263	NR_038280	100506963	Hs.592549	NR_038280	ENSG00000236810	LOC100506963	-	uncharacterized LOC100506963	miscRNA
chr16.3203786.+	chr16	3203786	3203787	+	0	NA	Intergenic	AluSg|SINE|Alu	18652	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr2.71357891.-	chr2	71357891	71357892	-	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-447	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr20.60888500.+	chr20	60888500	60888501	+	0	NA	"exon (NM_005560, exon 64 of 80)"	"exon (NM_005560, exon 64 of 80)"	10473	NM_007002	11047	Hs.90107	NM_007002	ENSG00000130706	ADRM1	ARM1|GP110|Rpn13	adhesion regulating molecule 1	protein-coding
chr12.22035189.-	chr12	22035189	22035190	-	0	NA	"intron (NM_020297, intron 14 of 37)"	"intron (NM_020297, intron 14 of 37)"	-54439	NM_005691	10060	Hs.732701	NM_005691	ENSG00000069431	ABCC9	ABC37|ATFB12|CANTU|CMD1O|SUR2	"ATP-binding cassette, sub-family C (CFTR/MRP), member 9"	protein-coding
chr17.11800280.+	chr17	11800280	11800281	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14061	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr17.1226080.-	chr17	1226080	1226081	-	0	NA	Intergenic	AluSx|SINE|Alu	-43123	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr22.51001341.+	chr22	51001341	51001342	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-13	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr4.138974428.+	chr4	138974428	138974429	+	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	-35740	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr6.25384357.-	chr6	25384357	25384358	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104701	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr1.41916704.-	chr1	41916704	41916705	-	0	NA	Intergenic	Intergenic	-33640	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr20.1317924.+	chr20	1317924	1317925	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-8045	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr20.57575058.+	chr20	57575058	57575059	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7251	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr11.1392991.+	chr11	1392991	1392992	+	0	NA	Intergenic	Intergenic	-18138	NM_003957	9024	Hs.170819	NM_001256627	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|STK29	BR serine/threonine kinase 2	protein-coding
chr7.1542244.-	chr7	1542244	1542245	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1774	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr10.8077106.-	chr10	8077106	8077107	-	0	NA	Intergenic	CpG	-18341	NR_024255	399717	Hs.669736	NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	miscRNA
chr22.18293064.-	chr22	18293064	18293065	-	0	NA	"intron (NM_015241, intron 28 of 31)"	AluY|SINE|Alu	35633	NM_001244567	637	Hs.591054	NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
chr3.9398149.+	chr3	9398149	9398150	+	0	NA	Intergenic	AluY|SINE|Alu	-6568	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr12.49856925.-	chr12	49856925	49856926	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73968	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr1.225983934.-	chr1	225983934	225983935	-	0	NA	Intergenic	SVA_A|Other|Other	13863	NM_001136018	2052	Hs.89649	NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	"epoxide hydrolase 1, microsomal (xenobiotic)"	protein-coding
chr12.123259462.-	chr12	123259462	123259463	-	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	-406	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chr13.49550715.-	chr13	49550715	49550716	-	0	NA	"intron (NM_001079673, intron 1 of 25)"	CpG	-667	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr7.532213.-	chr7	532213	532214	-	0	NA	Intergenic	Intergenic	-27268	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr16.17617326.+	chr16	17617326	17617327	+	0	NA	Intergenic	AluSz|SINE|Alu	-52588	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr7.2966829.+	chr7	2966829	2966830	+	0	NA	"intron (NM_032415, intron 13 of 24)"	"intron (NM_032415, intron 13 of 24)"	-82870	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr1.154218110.-	chr1	154218110	154218111	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	"intron (NM_001127320, intron 10 of 24)"	-24785	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr7.5570080.-	chr7	5570080	5570081	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-152	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr19.34287517.+	chr19	34287517	34287518	+	0	NA	promoter-TSS (NM_001129995)	promoter-TSS (NM_001129995)	-234	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr12.8831012.+	chr12	8831012	8831013	+	0	NA	Intergenic	AluSp|SINE|Alu	-15579	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr12.75694196.+	chr12	75694196	75694197	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29640	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr1.10727915.+	chr1	10727915	10727916	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128818	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr12.132061034.+	chr12	132061034	132061035	+	0	NA	Intergenic	Intergenic	-134598	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr7.106306724.-	chr7	106306724	106306725	-	0	NA	Intergenic	AluY|SINE|Alu	5090	NM_175884	168455	Hs.633903	NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
chr15.100080045.+	chr15	100080045	100080046	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26088	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr2.240401993.+	chr2	240401993	240401994	+	0	NA	Intergenic	Intergenic	-79350	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr4.174137131.+	chr4	174137131	174137132	+	0	NA	"intron (NM_017423, intron 1 of 11)"	AluJb|SINE|Alu	47227	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
chr22.51001316.-	chr22	51001316	51001317	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-12	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.97228926.+	chr1	97228926	97228927	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41751	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr15.22833484.+	chr15	22833484	22833485	+	0	NA	promoter-TSS (NM_052903)	promoter-TSS (NM_052903)	89	NM_001102610	114791	Hs.533898	NM_001102610	ENSG00000153575	TUBGCP5	GCP5	"tubulin, gamma complex associated protein 5"	protein-coding
chrX.136083600.-	chrX	136083600	136083601	-	0	NA	Intergenic	SVA_D|Other|Other	-30233	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
chr19.1453918.-	chr19	1453918	1453919	-	0	NA	"intron (NM_005883, intron 4 of 14)"	"intron (NM_005883, intron 4 of 14)"	-3770	NM_005883	10297	Hs.446376	NM_005883	ENSG00000115266	APC2	APCL	adenomatosis polyposis coli 2	protein-coding
chr14.23526817.-	chr14	23526817	23526818	-	0	NA	promoter-TSS (NM_022478)	promoter-TSS (NM_022478)	70	NM_022478	64403	Hs.155912	NM_022478	ENSG00000139880	CDH24	CDH11L	"cadherin 24, type 2"	protein-coding
chr13.45945071.-	chr13	45945071	45945072	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29591	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr12.118079899.+	chr12	118079899	118079900	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280292	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr22.49969157.-	chr22	49969157	49969158	-	0	NA	Intergenic	Intergenic	-82033	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr12.117605443.-	chr12	117605443	117605444	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22857	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr17.7982315.+	chr17	7982315	7982316	+	0	NA	"intron (NM_001139, intron 8 of 14)"	AluY|SINE|Alu	8706	NM_001139	242	Hs.136574	NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	"arachidonate 12-lipoxygenase, 12R type"	protein-coding
chr2.107872744.-	chr2	107872744	107872745	-	0	NA	Intergenic	Intergenic	369181	NM_032528	84620	Hs.98265	NM_001142351	ENSG00000144057	ST6GAL2	SIAT2|ST6GalII	"ST6 beta-galactosamide alpha-2,6-sialyltranferase 2"	protein-coding
chr19.35418186.-	chr19	35418186	35418187	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-379	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr10.20638019.-	chr10	20638019	20638020	-	0	NA	Intergenic	Intergenic	202880	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr12.34492689.+	chr12	34492689	34492690	+	0	NA	Intergenic	GSATII|Satellite|centr	317473	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr10.59080714.-	chr10	59080714	59080715	-	0	NA	Intergenic	AluY|SINE|Alu	16395	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr19.17448806.-	chr19	17448806	17448807	-	0	NA	"intron (NM_032620, intron 1 of 8)"	CpG	-480	NM_133644	84705	Hs.334885	NM_001128855	ENSG00000130299	GTPBP3	GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3 (mitochondrial)	protein-coding
chr6.14976617.+	chr6	14976617	14976618	+	0	NA	Intergenic	LTR2|LTR|ERV1	-269589	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr5.114712427.-	chr5	114712427	114712428	-	0	NA	Intergenic	AluYc3|SINE|Alu	79969	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr9.125137654.+	chr9	125137654	125137655	+	0	NA	promoter-TSS (NM_001271165)	promoter-TSS (NM_001271165)	53	NM_001271165	5742	Hs.201978	NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)	protein-coding
chr10.69822253.+	chr10	69822253	69822254	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12850	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr9.123743122.+	chr9	123743122	123743123	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51671	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr15.40733007.+	chr15	40733007	40733008	+	0	NA	promoter-TSS (NM_014952)	promoter-TSS (NM_014952)	-404	NM_014952	22893	Hs.22109	NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
chr5.179373602.-	chr5	179373602	179373603	-	0	NA	Intergenic	AluY|SINE|Alu	38746	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr15.75701833.+	chr15	75701833	75701834	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	-40865	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr4.123063370.-	chr4	123063370	123063371	-	0	NA	Intergenic	AluSg7|SINE|Alu	28388	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr16.632089.-	chr16	632089	632090	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7268	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr22.36822847.-	chr22	36822847	36822848	-	0	NA	Intergenic	Intergenic	38784	NM_002473	4627	Hs.474751	NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	"myosin, heavy chain 9, non-muscle"	protein-coding
chr10.135075428.-	chr10	135075428	135075429	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14304	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr12.6436731.+	chr12	6436731	6436732	+	0	NA	"exon (NM_001144856, exon 15 of 16)"	"exon (NM_001144856, exon 15 of 16)"	14552	NM_001065	7132	Hs.279594	NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60	"tumor necrosis factor receptor superfamily, member 1A"	protein-coding
chr8.128328708.-	chr8	128328708	128328709	-	0	NA	Intergenic	Intergenic	99149	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr22.34378910.+	chr22	34378910	34378911	+	0	NA	Intergenic	AluSx1|SINE|Alu	-62494	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr6.3163204.+	chr6	3163204	3163205	+	0	NA	Intergenic	CpG	-5421	NM_001069	7280	Hs.654543	NM_001069	ENSG00000137267	TUBB2A	TUBB|TUBB2|dJ40E16.7	"tubulin, beta 2A class IIa"	protein-coding
chr9.137722681.-	chr9	137722681	137722682	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18534	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr19.18340242.-	chr19	18340242	18340243	-	0	NA	"intron (NM_000923, intron 2 of 15)"	AluSx1|SINE|Alu	2957	NM_001098818	5143	Hs.132584	NM_000923	ENSG00000105650	PDE4C	DPDE1	"phosphodiesterase 4C, cAMP-specific"	protein-coding
chr7.3221150.+	chr7	3221150	3221151	+	0	NA	Intergenic	Intergenic	-119930	NM_152744	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr6.8388539.-	chr6	8388539	8388540	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47255	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr17.4926578.-	chr17	4926578	4926579	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12149	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr6.41702109.+	chr6	41702109	41702110	+	0	NA	promoter-TSS (NM_001271945)	promoter-TSS (NM_001271945)	30	NM_001271945	7942	Hs.485360	NM_001167827	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
chr15.75772875.-	chr15	75772875	75772876	-	0	NA	"intron (NM_002833, intron 8 of 12)"	CpG	24751	NM_001145357	25942	Hs.513039	NM_001145357	ENSG00000169375	SIN3A	-	SIN3 transcription regulator homolog A (yeast)	protein-coding
chr1.28703584.-	chr1	28703584	28703585	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7491	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr6.165205807.+	chr6	165205807	165205808	+	0	NA	Intergenic	AluYb8|SINE|Alu	517304	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr8.10386070.+	chr8	10386070	10386071	+	0	NA	"intron (NM_198464, intron 1 of 4)"	"intron (NM_198464, intron 1 of 4)"	3014	NM_198464	203074	Hs.591394	NM_001197020	ENSG00000184647	PRSS55	T-SP1|UNQ9391	"protease, serine, 55"	protein-coding
chr17.29151570.-	chr17	29151570	29151571	-	0	NA	"exon (NM_015986, exon 1 of 8)"	"exon (NM_015986, exon 1 of 8)"	-208	NM_015986	51379	Hs.649372	NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor-like factor 3	protein-coding
chrX.47230731.+	chrX	47230731	47230732	+	0	NA	"intron (NM_003446, intron 1 of 3)"	AluSz|SINE|Alu	732	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr13.108870655.-	chr13	108870655	108870656	-	0	NA	promoter-TSS (NM_001098268)	promoter-TSS (NM_001098268)	-61	NM_001098268	3981	Hs.166091	NM_001098268	ENSG00000174405	LIG4	-	"ligase IV, DNA, ATP-dependent"	protein-coding
chr1.161508240.-	chr1	161508240	161508241	-	0	NA	Intergenic	AluYf4|SINE|Alu	-11578	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr1.3321083.+	chr1	3321083	3321084	+	0	NA	"intron (NM_199454, intron 6 of 16)"	"intron (NM_199454, intron 6 of 16)"	-50064	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr2.240371677.+	chr2	240371677	240371678	+	0	NA	Intergenic	SVA_D|Other|Other	-49034	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr1.171662935.-	chr1	171662935	171662936	-	0	NA	Intergenic	SVA_C|Other|Other	41162	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr17.45771301.-	chr17	45771301	45771302	-	0	NA	Intergenic	CpG	1329	NM_014726	9755	Hs.94790	NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
chr5.86907874.+	chr5	86907874	86907875	+	0	NA	Intergenic	AluY|SINE|Alu	-199024	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr12.132372577.-	chr12	132372577	132372578	-	0	NA	Intergenic	AluSx|SINE|Alu	6702	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr7.36845292.-	chr7	36845292	36845293	-	0	NA	Intergenic	AluJb|SINE|Alu	81138	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr12.109325573.+	chr12	109325573	109325574	+	0	NA	"intron (NM_018711, intron 10 of 14)"	AluY|SINE|Alu	51716	NM_001917	1610	Hs.113227	NM_001917	ENSG00000110887	DAO	DAAO|DAMOX|OXDA	D-amino-acid oxidase	protein-coding
chrX.132399695.-	chrX	132399695	132399696	-	0	NA	Intergenic	Intergenic	47319	NM_016521	51270	Hs.142908	NM_016521	ENSG00000183434	TFDP3	CT30|DP4|HCA661	"transcription factor Dp family, member 3"	protein-coding
chr19.50670083.+	chr19	50670083	50670084	+	0	NA	Intergenic	AluSg|SINE|Alu	-3545	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr19.411333.+	chr19	411333	411334	+	0	NA	Intergenic	Intergenic	-2163	NM_001136263	126567	Hs.223770	NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium-dependent domain containing 4C	protein-coding
chr17.1943116.+	chr17	1943116	1943117	+	0	NA	"exon (NM_001383, exon 7 of 13)"	"exon (NM_001383, exon 7 of 13)"	-2161	NM_080822	124641	Hs.513856	NM_080822	ENSG00000214014	OVCA2	-	ovarian tumor suppressor candidate 2	protein-coding
chr11.89400855.-	chr11	89400855	89400856	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8390	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr16.1123278.-	chr16	1123278	1123279	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-522	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr9.139780629.-	chr9	139780629	139780630	-	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	336	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr10.6261438.+	chr10	6261438	6261439	+	0	NA	"intron (NM_001145443, intron 6 of 14)"	"intron (NM_001145443, intron 6 of 14)"	16598	NM_004566	5209	Hs.195471	NM_001145443	ENSG00000170525	PFKFB3	IPFK2|PFK2	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3"	protein-coding
chr6.166331212.-	chr6	166331212	166331213	-	0	NA	Intergenic	Intergenic	69827	NR_027284	441177	Hs.708964	NM_001013720		LINC00602	-	long intergenic non-protein coding RNA 602	miscRNA
chr12.89754103.+	chr12	89754103	89754104	+	0	NA	Intergenic	AluY|SINE|Alu	-7807	NM_022652	1848	Hs.718640	NM_001946	ENSG00000139318	DUSP6	MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chr11.64837474.+	chr11	64837474	64837475	+	0	NA	Intergenic	Intergenic	-11465	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr8.23097408.-	chr8	23097408	23097409	-	0	NA	Intergenic	AluY|SINE|Alu	3742	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr7.100044648.-	chr7	100044648	100044649	-	0	NA	Intergenic	AluY|SINE|Alu	10554	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr5.672048.+	chr5	672048	672049	+	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	21462	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr19.21734792.-	chr19	21734792	21734793	-	0	NA	Intergenic	SVA_D|Other|Other	-46355	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr18.63211149.-	chr18	63211149	63211150	-	0	NA	Intergenic	AluY|SINE|Alu	206339	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr12.31079448.+	chr12	31079448	31079449	+	0	NA	promoter-TSS (NM_001080509)	promoter-TSS (NM_001080509)	-390	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
chr7.25058038.-	chr7	25058038	25058039	-	0	NA	Intergenic	SVA_F|Other|Other	38278	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr20.3879976.+	chr20	3879976	3879977	+	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	9513	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr3.128145610.+	chr3	128145610	128145611	+	0	NA	Intergenic	CpG	-36827	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr16.1838755.+	chr16	1838755	1838756	+	0	NA	"3' UTR (NM_012225, exon 7 of 7)"	"3' UTR (NM_012225, exon 7 of 7)"	4979	NM_004970	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr11.20177875.-	chr11	20177875	20177876	-	0	NA	"exon (NM_001029865, exon 4 of 4)"	"exon (NM_001029865, exon 4 of 4)"	-3995	NM_001029865	120237	Hs.558604	NM_001029865	ENSG00000109851	DBX1	-	developing brain homeobox 1	protein-coding
chr8.144512835.-	chr8	144512835	144512836	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	233	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.25758479.-	chr2	25758479	25758480	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114612	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr17.67192577.+	chr17	67192577	67192578	+	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	48379	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chr12.38493576.-	chr12	38493576	38493577	-	0	NA	Intergenic	Intergenic	216981	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr12.113494395.-	chr12	113494395	113494396	-	0	NA	Intergenic	CpG	1267	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr7.1474638.+	chr7	1474638	1474639	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24471	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr11.86869665.+	chr11	86869665	86869666	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	120779	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr11.67759437.-	chr11	67759437	67759438	-	0	NA	"intron (NM_030930, intron 10 of 10)"	CpG	-12156	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chr9.139775642.-	chr9	139775642	139775643	-	0	NA	Intergenic	AluSp|SINE|Alu	5323	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr19.10408168.+	chr19	10408168	10408169	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7513	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr19.10041353.+	chr19	10041353	10041354	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5717	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr1.226350805.-	chr1	226350805	226350806	-	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	-23618	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr1.51984046.-	chr1	51984046	51984047	-	0	NA	"intron (NM_001981, intron 1 of 24)"	"intron (NM_001981, intron 1 of 24)"	-949	NM_001981	2060	Hs.83722	NM_001159969	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
chr7.12595733.+	chr7	12595733	12595734	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14470	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr9.135013586.-	chr9	135013586	135013587	-	0	NA	Intergenic	AluSz|SINE|Alu	23748	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr5.2391317.-	chr5	2391317	2391318	-	0	NA	Intergenic	Intergenic	-360452	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr16.5016325.-	chr16	5016325	5016326	-	0	NA	"intron (NM_014692, intron 2 of 15)"	AluSx1|SINE|Alu	-8007	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14-like 5 (S. cerevisiae)	protein-coding
chr2.91874353.+	chr2	91874353	91874354	+	0	NA	Intergenic	CpG	-26378	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr3.129670092.+	chr3	129670092	129670093	+	0	NA	Intergenic	Intergenic	-23022	NM_007117	7200	Hs.732877	NM_007117	ENSG00000170893	TRH	-	thyrotropin-releasing hormone	protein-coding
chr2.238947600.-	chr2	238947600	238947601	-	0	NA	"intron (NR_037904, intron 7 of 18)"	AluSq2|SINE|Alu	21965	NM_016510	51540	Hs.731909	NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
chr8.8748778.+	chr8	8748778	8748779	+	0	NA	"exon (NM_004225, exon 1 of 3)"	"exon (NM_004225, exon 1 of 3)"	2353	NM_004225	9258	Hs.379414	NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
chr2.43378630.+	chr2	43378630	43378631	+	0	NA	Intergenic	AluSg|SINE|Alu	75115	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr1.221916387.-	chr1	221916387	221916388	-	0	NA	promoter-TSS (NM_007207)	promoter-TSS (NM_007207)	871	NM_144729	11221	Hs.732301	NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
chr7.100044751.+	chr7	100044751	100044752	+	0	NA	Intergenic	Intergenic	-10657	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr12.129892211.-	chr12	129892211	129892212	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496001	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr2.70416481.-	chr2	70416481	70416482	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1670	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr3.22843334.-	chr3	22843334	22843335	-	0	NA	Intergenic	L1PA2|LINE|L1	401450	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr7.26301567.-	chr7	26301567	26301568	-	0	NA	Intergenic	SVA_D|Other|Other	29948	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr2.10424787.-	chr2	10424787	10424788	-	0	NA	Intergenic	Intergenic	18243	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr3.93689443.+	chr3	93689443	93689444	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3491	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr8.95509791.-	chr8	95509791	95509792	-	0	NA	"intron (NM_015496, intron 17 of 23)"	AluSx1|SINE|Alu	22448	NM_001205262	25788	Hs.744229	NM_001205262	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B (S. cerevisiae)	protein-coding
chr6.154586604.-	chr6	154586604	154586605	-	0	NA	"intron (NM_001130699, intron 4 of 12)"	AluSg|SINE|Alu	-64611	NM_001130699	26034	Hs.146100	NM_001130699	ENSG00000074706	IPCEF1	PIP3-E|RP3-402L9.2	interaction protein for cytohesin exchange factors 1	protein-coding
chr6.151727639.-	chr6	151727639	151727640	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14962	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr3.98624714.-	chr3	98624714	98624715	-	0	NA	Intergenic	AluY|SINE|Alu	4181	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr11.41260598.+	chr11	41260598	41260599	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220588	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr10.71562752.-	chr10	71562752	71562753	-	0	NA	"intron (NM_001130103, intron 1 of 39)"	CpG	-1108	NM_080805	1305	Hs.695934	NM_001130103	ENSG00000197467	COL13A1	COLXIIIA1	"collagen, type XIII, alpha 1"	protein-coding
chr7.129803699.-	chr7	129803699	129803700	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41639	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr19.17585883.-	chr19	17585883	17585884	-	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	-4583	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chrX.69569462.-	chrX	69569462	69569463	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59583	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr10.88698886.+	chr10	88698886	88698887	+	0	NA	"intron (NM_024756, intron 6 of 6)"	AluSp|SINE|Alu	18539	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chr2.4156471.-	chr2	4156471	4156472	-	0	NA	Intergenic	Intergenic	134849	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr5.14460465.+	chr5	14460465	14460466	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121426	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr5.32689741.-	chr5	32689741	32689742	-	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	21002	NM_001204376	4883	Hs.619466	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
chr7.1474502.+	chr7	1474502	1474503	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24607	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chrX.141491526.-	chrX	141491526	141491527	-	0	NA	Intergenic	AluY|SINE|Alu	198450	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr7.74447122.-	chr7	74447122	74447123	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42577	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr2.141963966.-	chr2	141963966	141963967	-	0	NA	"intron (NM_018557, intron 6 of 90)"	AluY|SINE|Alu	-925304	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
chr16.16013170.-	chr16	16013170	16013171	-	0	NA	Intergenic	AluY|SINE|Alu	30264	NM_004996	4363	Hs.391464	NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	"ATP-binding cassette, sub-family C (CFTR/MRP), member 1"	protein-coding
chr1.86147955.+	chr1	86147955	86147956	+	0	NA	"intron (NM_001170670, intron 6 of 10)"	AluY|SINE|Alu	26161	NM_001170670	54680	Hs.5111	NM_001170670	ENSG00000117174	ZNHIT6	BCD1|C1orf181|NY-BR-75	"zinc finger, HIT-type containing 6"	protein-coding
chr2.159693868.+	chr2	159693868	159693869	+	0	NA	Intergenic	AluSp|SINE|Alu	42039	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr1.161879497.+	chr1	161879497	161879498	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114147	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr16.3146812.+	chr16	3146812	3146813	+	0	NA	Intergenic	AluSx|SINE|Alu	-3951	NM_032805	84891	Hs.334515	NM_032805	ENSG00000130182	ZSCAN10	ZNF206	zinc finger and SCAN domain containing 10	protein-coding
chr6.18371777.-	chr6	18371777	18371778	-	0	NA	Intergenic	AluSx1|SINE|Alu	15804	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
chr7.158218573.-	chr7	158218573	158218574	-	0	NA	"intron (NM_130842, intron 1 of 21)"	CpG	-106932	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr16.443645.-	chr16	443645	443646	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3547	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr6.70692601.-	chr6	70692601	70692602	-	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	-116153	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr2.48842061.+	chr2	48842061	48842062	+	0	NA	"intron (NM_172311, intron 3 of 10)"	SVA_D|Other|Other	-2876	NM_006872	11036	Hs.732016	NM_001193487	ENSG00000242441	GTF2A1L	ALF	"general transcription factor IIA, 1-like"	protein-coding
chrY.59004193.-	chrY	59004193	59004194	-	0	NA	Intergenic	AluSq2|SINE|Alu	96264	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
chr7.158238681.+	chr7	158238681	158238682	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	86824	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr11.67085408.+	chr11	67085408	67085409	+	0	NA	promoter-TSS (NR_024469)	promoter-TSS (NR_024469)	98	NR_024469	100130987	Hs.664585	NR_024469		LOC100130987	-	uncharacterized LOC100130987	miscRNA
chrX.122993627.-	chrX	122993627	122993628	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	35	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr17.73439476.-	chr17	73439476	73439477	-	0	NA	Intergenic	AluSg4|SINE|Alu	13188	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr3.48117846.-	chr3	48117846	48117847	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-12923	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr1.227982843.-	chr1	227982843	227982844	-	0	NA	Intergenic	Intergenic	20575	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr1.54953567.+	chr1	54953567	54953568	+	0	NA	Intergenic	Intergenic	-60240	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr12.133107556.-	chr12	133107556	133107557	-	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	-40399	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr17.7365512.-	chr17	7365512	7365513	-	0	NA	"exon (NM_001128833, exon 4 of 4)"	"exon (NM_001128833, exon 4 of 4)"	-17106	NM_000747	1140	Hs.330386	NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|SCCMS	"cholinergic receptor, nicotinic, beta 1 (muscle)"	protein-coding
chr12.8961505.-	chr12	8961505	8961506	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	13645	NM_144670	144568	Hs.620532	NM_144670	ENSG00000166535	A2ML1	CPAMD9	alpha-2-macroglobulin-like 1	protein-coding
chr6.114387679.+	chr6	114387679	114387680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3638	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chr10.72238772.+	chr10	72238772	72238773	+	0	NA	"5' UTR (NM_014431, exon 1 of 20)"	"5' UTR (NM_014431, exon 1 of 20)"	208	NM_014431	27143	Hs.202351	NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	"phosphatase domain containing, paladin 1"	protein-coding
chr19.2244230.-	chr19	2244230	2244231	-	0	NA	"intron (NM_007165, intron 2 of 8)"	"intron (NM_007165, intron 2 of 8)"	4883	NM_000479	268	Hs.112432	NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
chr4.166248543.-	chr4	166248543	166248544	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	275	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr17.42200827.+	chr17	42200827	42200828	+	0	NA	"intron (NM_005474, intron 1 of 26)"	CpG	187	NM_001015053	10014	Hs.438782	NM_001015053	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
chr16.88258027.+	chr16	88258027	88258028	+	0	NA	Intergenic	Intergenic	-235852	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr10.128174238.-	chr10	128174238	128174239	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35772	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr16.3733144.-	chr16	3733144	3733145	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30204	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chrM.16403.+	chrM	16403	16404	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr10.43563203.-	chr10	43563203	43563204	-	0	NA	Intergenic	Intergenic	9314	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr17.77704864.+	chr17	77704864	77704865	+	0	NA	promoter-TSS (NM_178543)	promoter-TSS (NM_178543)	-18	NM_178543	339221	Hs.114084	NM_178543	ENSG00000182156	ENPP7	ALK-SMase	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
chr9.136951714.+	chr9	136951714	136951715	+	0	NA	Intergenic	AluY|SINE|Alu	-18573	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr16.58810871.-	chr16	58810871	58810872	-	0	NA	Intergenic	AluSq4|SINE|Alu	42625	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr6.122006952.+	chr6	122006952	122006953	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250207	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr13.45945069.+	chr13	45945069	45945070	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29589	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr19.16633089.-	chr19	16633089	16633090	-	0	NA	TTS (NM_032207)	TTS (NM_032207)	-20174	NM_006387	10523	Hs.740364	NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
chr2.232202230.-	chr2	232202230	232202231	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25189	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr17.4488403.-	chr17	4488403	4488404	-	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	-569	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chrX.42145044.+	chrX	42145044	42145045	+	0	NA	Intergenic	SVA_D|Other|Other	-362757	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr11.63286744.-	chr11	63286744	63286745	-	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	-11285	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr16.19394756.-	chr16	19394756	19394757	-	0	NA	Intergenic	Intergenic	27301	NM_001105249	79838	Hs.115838	NM_001105248	ENSG00000103534	TMC5	-	transmembrane channel-like 5	protein-coding
chr1.21892979.-	chr1	21892979	21892980	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57121	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr11.8302426.-	chr11	8302426	8302427	-	0	NA	Intergenic	AluY|SINE|Alu	12244	NM_001270428	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
chr9.140187810.+	chr9	140187810	140187811	+	0	NA	Intergenic	Intergenic	8893	NM_001004354	441478	Hs.732282	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
chr17.76198466.+	chr17	76198466	76198467	+	0	NA	"intron (NM_001145526, intron 2 of 10)"	AluSx3|SINE|Alu	-11811	NM_001012271	332	Hs.514527	NM_001012270	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
chr1.113336894.-	chr1	113336894	113336895	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73705	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chrX.136083621.-	chrX	136083621	136083622	-	0	NA	Intergenic	SVA_D|Other|Other	-30212	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
chr20.31414401.-	chr20	31414401	31414402	-	0	NA	"intron (NM_012325, intron 2 of 6)"	AluSz|SINE|Alu	-6702	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	"microtubule-associated protein, RP/EB family, member 1"	protein-coding
chr11.8040461.-	chr11	8040461	8040462	-	0	NA	Intergenic	CpG	19719	NM_003320	7275	Hs.733193	NM_003320	ENSG00000166402	TUB	rd5	tubby homolog (mouse)	protein-coding
chr17.28675260.-	chr17	28675260	28675261	-	0	NA	Intergenic	AluY|SINE|Alu	14195	NM_206832	388364	Hs.371005	NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
chr5.177538222.-	chr5	177538222	177538223	-	0	NA	Intergenic	AluSp|SINE|Alu	2334	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr22.43641427.+	chr22	43641427	43641428	+	0	NA	"intron (NM_173050, intron 6 of 21)"	"intron (NM_173050, intron 6 of 21)"	-58290	NM_015140	23170	Hs.517670	NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	"tubulin tyrosine ligase-like family, member 12"	protein-coding
chr20.57372779.-	chr20	57372779	57372780	-	0	NA	Intergenic	HAL1|LINE|L1	-19970	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr19.10041272.+	chr19	10041272	10041273	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5798	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chrX.86721043.-	chrX	86721043	86721044	-	0	NA	Intergenic	SVA_C|Other|Other	51672	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr7.155246301.+	chr7	155246301	155246302	+	0	NA	Intergenic	Intergenic	-4523	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr19.46277606.+	chr19	46277606	46277607	+	0	NA	"intron (NM_001081563, intron 8 of 13)"	AluY|SINE|Alu	-5109	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
chr1.227982957.+	chr1	227982957	227982958	+	0	NA	Intergenic	Intergenic	-20461	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr16.69056082.-	chr16	69056082	69056083	-	0	NA	"intron (NM_024562, intron 15 of 17)"	AluY|SINE|Alu	83385	NM_001199280	3038	Hs.592069	NM_001199280	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
chr3.174240456.+	chr3	174240456	174240457	+	0	NA	Intergenic	AluY|SINE|Alu	-336655	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr4.8913678.+	chr4	8913678	8913679	+	0	NA	Intergenic	Intergenic	-37799	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr22.50655086.-	chr22	50655086	50655087	-	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	-15678	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr3.170641245.+	chr3	170641245	170641246	+	0	NA	Intergenic	SVA_C|Other|Other	-14819	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr22.30115907.-	chr22	30115907	30115908	-	0	NA	promoter-TSS (NM_182527)	promoter-TSS (NM_182527)	437	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
chr12.120856946.-	chr12	120856946	120856947	-	0	NA	Intergenic	AluSz|SINE|Alu	18947	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr3.195498033.+	chr3	195498033	195498034	+	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	40811	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr1.112058443.+	chr1	112058443	112058444	+	0	NA	"intron (NM_001081976, intron 1 of 5)"	CpG	-11700	NM_000677	140	Hs.281342	NM_000677	ENSG00000121933	ADORA3	A3AR|AD026|bA552M11.5	adenosine A3 receptor	protein-coding
chr22.17716505.+	chr22	17716505	17716506	+	0	NA	Intergenic	Intergenic	-25726	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr12.26964587.+	chr12	26964587	26964588	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21544	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr18.73357736.+	chr18	73357736	73357737	+	0	NA	Intergenic	L2|LINE|L2	-218147	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr17.7951753.-	chr17	7951753	7951754	-	0	NA	"exon (NM_001039131, exon 12 of 12)"	"exon (NM_001039131, exon 12 of 12)"	-9395	NM_001141	247	Hs.111256	NM_001039130	ENSG00000179593	ALOX15B	15-LOX-2	"arachidonate 15-lipoxygenase, type B"	protein-coding
chr15.75701814.+	chr15	75701814	75701815	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	-40846	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr7.100963624.+	chr7	100963624	100963625	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1469	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chrX.69654765.-	chrX	69654765	69654766	-	0	NA	Intergenic	Intergenic	9940	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr15.83365807.+	chr15	83365807	83365808	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12828	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr19.13741896.-	chr19	13741896	13741897	-	0	NA	Intergenic	AluSc8|SINE|Alu	116857	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr1.242178358.+	chr1	242178358	242178359	+	0	NA	Intergenic	AluY|SINE|Alu	-15973	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr7.155246292.-	chr7	155246292	155246293	-	0	NA	Intergenic	Intergenic	4532	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr6.157734067.+	chr6	157734067	157734068	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11186	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr8.1205517.+	chr8	1205517	1205518	+	0	NA	Intergenic	Intergenic	45310	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr2.127635305.+	chr2	127635305	127635306	+	0	NA	Intergenic	Intergenic	221794	NM_002101	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr2.178129399.+	chr2	178129399	178129400	+	0	NA	promoter-TSS (NM_001145412)	promoter-TSS (NM_001145412)	460	NM_006164	4780	Hs.744006	NM_001145412	ENSG00000116044	NFE2L2	NRF2	nuclear factor (erythroid-derived 2)-like 2	protein-coding
chrX.132930107.+	chrX	132930107	132930108	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189566	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr17.12456645.-	chr17	12456645	12456646	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3360	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr16.31932536.-	chr16	31932536	31932537	-	0	NA	Intergenic	AluY|SINE|Alu	-47457	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr4.4165472.+	chr4	4165472	4165473	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	63149	NM_177998	133060	Hs.534544	NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
chr15.29132955.-	chr15	29132955	29132956	-	0	NA	Intergenic	Intergenic	39134	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr19.4065728.-	chr19	4065728	4065729	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1088	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr19.53979655.-	chr19	53979655	53979656	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8666	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr3.126194332.-	chr3	126194332	126194333	-	0	NA	"exon (NM_025112, exon 1 of 10)"	"exon (NM_025112, exon 1 of 10)"	-430	NM_001040653	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr2.233477488.+	chr2	233477488	233477489	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6721	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr7.627685.+	chr7	627685	627686	+	0	NA	"intron (NM_002735, intron 7 of 10)"	"intron (NM_002735, intron 7 of 10)"	67657	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr3.52918375.+	chr3	52918375	52918376	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13222	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr14.92805509.+	chr14	92805509	92805510	+	0	NA	"intron (NM_153646, intron 2 of 16)"	"intron (NM_153646, intron 2 of 16)"	15357	NM_153646	123041	Hs.385530	NM_153646		SLC24A4	NCKX4|SHEP6|SLC24A2	"solute carrier family 24 (sodium/potassium/calcium exchanger), member 4"	protein-coding
chr22.50871773.-	chr22	50871773	50871774	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41691	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr2.113012445.+	chr2	113012445	113012446	+	0	NA	"intron (NM_032494, intron 1 of 8)"	CpG	219	NM_032494	84524	Hs.418416	NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
chr2.131823842.-	chr2	131823842	131823843	-	0	NA	"intron (NM_001009993, intron 3 of 6)"	AluY|SINE|Alu	-27162	NM_001009993	130074	Hs.534679	NM_001009993	ENSG00000152102	FAM168B	MANI	"family with sequence similarity 168, member B"	protein-coding
chrX.132930096.-	chrX	132930096	132930097	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189577	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr13.113732047.-	chr13	113732047	113732048	-	0	NA	"intron (NM_001112732, intron 13 of 29)"	"intron (NM_001112732, intron 13 of 29)"	28055	NM_000131	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII (serum prothrombin conversion accelerator)	protein-coding
chr8.7877739.+	chr8	7877739	7877740	+	0	NA	Intergenic	Intergenic	-22696	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr9.140446481.-	chr9	140446481	140446482	-	0	NA	"intron (NM_032477, intron 1 of 1)"	CpG	-172	NM_032477	64975	Hs.44017	NM_032477		MRPL41	BMRP|MRP-L27|MRPL27|RPML27	mitochondrial ribosomal protein L41	protein-coding
chr11.72194553.-	chr11	72194553	72194554	-	0	NA	Intergenic	AluSc|SINE|Alu	48829	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr19.13976811.-	chr19	13976811	13976812	-	0	NA	Intergenic	CpG	8702	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	miscRNA
chrX.53123343.+	chrX	53123343	53123344	+	0	NA	Intergenic	CpG	11801	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.133066367.+	chr12	133066367	133066368	+	0	NA	promoter-TSS (NM_001142641)	promoter-TSS (NM_001142641)	-790	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr5.168300402.-	chr5	168300402	168300403	-	0	NA	"intron (NM_003062, intron 5 of 35)"	AluJb|SINE|Alu	105142	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	miscRNA
chr15.30624424.-	chr15	30624424	30624425	-	0	NA	Intergenic	AluY|SINE|Alu	-61440	NM_148911	89832	Hs.510853	NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10	"CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion"	protein-coding
chr16.83975004.+	chr16	83975004	83975005	+	0	NA	Intergenic	AluJb|SINE|Alu	-11823	NM_182981	29948	Hs.128055	NM_182981	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
chr6.134540767.+	chr6	134540767	134540768	+	0	NA	"intron (NM_001143676, intron 2 of 13)"	AluSp|SINE|Alu	-41757	NM_001143677	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr7.155656503.+	chr7	155656503	155656504	+	0	NA	Intergenic	Intergenic	-51536	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr19.33776883.-	chr19	33776883	33776884	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16547	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr10.28650998.-	chr10	28650998	28650999	-	0	NA	Intergenic	AluY|SINE|Alu	79931	NM_173496	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	"membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)"	protein-coding
chr18.33709903.+	chr18	33709903	33709904	+	0	NA	promoter-TSS (NM_001242877)	promoter-TSS (NM_001242877)	66	NR_040110	55250	Hs.8739	NM_001242875	ENSG00000134759	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
chr6.72892760.+	chr6	72892760	72892761	+	0	NA	"exon (NM_014989, exon 6 of 34)"	"exon (NM_014989, exon 6 of 34)"	-29754	NM_001168407	22999	Hs.485729	NM_001168407	ENSG00000079841	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
chrX.46794153.+	chrX	46794153	46794154	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22285	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr2.240402023.+	chr2	240402023	240402024	+	0	NA	Intergenic	Intergenic	-79380	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr5.176091498.+	chr5	176091498	176091499	+	0	NA	Intergenic	Intergenic	17110	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr6.163752526.-	chr6	163752526	163752527	-	0	NA	Intergenic	Intergenic	7021	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr8.22594716.+	chr8	22594716	22594717	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43901	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chrM.11148.-	chrM	11148	11149	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.16159888.+	chr3	16159888	16159889	+	0	NA	Intergenic	AluSx|SINE|Alu	-56296	NM_054110	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNT13|GALNT7|GALNTL2|PIH5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chr1.151473990.-	chr1	151473990	151473991	-	0	NA	Intergenic	AluSx|SINE|Alu	9872	NM_020770	57530	Hs.591464	NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
chr11.17905670.+	chr11	17905670	17905671	+	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	128967	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr3.58073337.+	chr3	58073337	58073338	+	0	NA	"intron (NM_001457, intron 4 of 45)"	AluSg4|SINE|Alu	79210	NM_001164317	2317	Hs.476448	NM_001164317	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	"filamin B, beta"	protein-coding
chrX.63045990.-	chrX	63045990	63045991	-	0	NA	Intergenic	SVA_B|Other|Other	40023	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468	microRNA 1468	miscRNA
chr8.82192755.+	chr8	82192755	82192756	+	0	NA	promoter-TSS (NM_001444)	promoter-TSS (NM_001444)	37	NM_001444	2171	Hs.408061	NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5 (psoriasis-associated)	protein-coding
chr16.8974140.+	chr16	8974140	8974141	+	0	NA	Intergenic	Intergenic	-11277	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr9.130734351.-	chr9	130734351	130734352	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8461	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chrX.99891414.-	chrX	99891414	99891415	-	0	NA	"intron (NM_003270, intron 1 of 7)"	CpG	-380	NM_003270	7105	Hs.43233	NM_003270	ENSG00000000003	TSPAN6	T245|TM4SF6|TSPAN-6	tetraspanin 6	protein-coding
chr17.19786169.+	chr17	19786169	19786170	+	0	NA	Intergenic	AluY|SINE|Alu	-14930	NM_001142610	9706	Hs.168762	NM_001142610	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51-like kinase 2 (C. elegans)	protein-coding
chr16.4537740.-	chr16	4537740	4537741	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8119	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr6.168209541.-	chr6	168209541	168209542	-	0	NA	Intergenic	AluSq|SINE|Alu	12002	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr4.185655145.+	chr4	185655145	185655146	+	0	NA	"intron (NM_024629, intron 1 of 12)"	CpG	141	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr4.134408518.+	chr4	134408518	134408519	+	0	NA	Intergenic	AluY|SINE|Alu	338048	NM_020815	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr1.17034299.+	chr1	17034299	17034300	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12353	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr4.1400168.+	chr4	1400168	1400169	+	0	NA	Intergenic	CpG	14828	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr21.46737160.+	chr21	46737160	46737161	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	29193	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr11.31560838.+	chr11	31560838	31560839	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29541	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr3.164119737.+	chr3	164119737	164119738	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676546	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chrX.141358160.-	chrX	141358160	141358161	-	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	65084	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr4.1626813.-	chr4	1626813	1626814	-	0	NA	Intergenic	CpG	-58905	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr17.3857932.-	chr17	3857932	3857933	-	0	NA	"intron (NM_174955, intron 1 of 21)"	AluSg|SINE|Alu	-9826	NM_174957	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	"ATPase, Ca++ transporting, ubiquitous"	protein-coding
chr1.151742030.-	chr1	151742030	151742031	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2899	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr9.86597327.-	chr9	86597327	86597328	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1690	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr1.27293961.+	chr1	27293961	27293962	+	0	NA	Intergenic	AluSx|SINE|Alu	-7060	NM_152365	126695	Hs.188881	NM_152365	ENSG00000175707	C1orf172	RP11-344H11.3	chromosome 1 open reading frame 172	protein-coding
chr11.73347276.+	chr11	73347276	73347277	+	0	NA	Intergenic	AluSq|SINE|Alu	-9947	NM_001130033	58473	Hs.445489	NM_001130033	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	"pleckstrin homology domain containing, family B (evectins) member 1"	protein-coding
chr6.132823912.+	chr6	132823912	132823913	+	0	NA	"intron (NM_003569, intron 2 of 9)"	AluY|SINE|Alu	10425	NM_003569	8417	Hs.605992	NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
chrX.132930090.+	chrX	132930090	132930091	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189583	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr12.96314668.-	chr12	96314668	96314669	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21760	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr7.158671024.-	chr7	158671024	158671025	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21755	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chrX.69569461.-	chrX	69569461	69569462	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59582	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr11.69189585.+	chr11	69189585	69189586	+	0	NA	Intergenic	Intergenic	127963	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr10.104238503.+	chr10	104238503	104238504	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17333	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr6.1610251.+	chr6	1610251	1610252	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-430	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr2.183903184.-	chr2	183903184	183903185	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-45	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr1.10446795.+	chr1	10446795	10446796	+	0	NA	Intergenic	AluY|SINE|Alu	-12290	NM_002631	5226	Hs.464071	NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
chr20.35167617.-	chr20	35167617	35167618	-	0	NA	Intergenic	AluY|SINE|Alu	2270	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr3.49297098.+	chr3	49297098	49297099	+	0	NA	Intergenic	AluY|SINE|Alu	-14455	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	miscRNA
chr21.47403590.-	chr21	47403590	47403591	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1927	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr19.1252665.-	chr19	1252665	1252666	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4113	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr19.31841005.+	chr19	31841005	31841006	+	0	NA	promoter-TSS (NM_020856)	promoter-TSS (NM_020856)	-815	NM_020856	57616	Hs.278436	NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
chr11.100596519.-	chr11	100596519	100596520	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38112	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr17.29718255.+	chr17	29718255	29718256	+	0	NA	promoter-TSS (NM_032932)	promoter-TSS (NM_032932)	-387	NM_032932	84440	Hs.406788	NM_032932	ENSG00000131242	RAB11FIP4	RAB11-FIP4	RAB11 family interacting protein 4 (class II)	protein-coding
chr12.112161421.-	chr12	112161421	112161422	-	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_F|Other|Other	-37564	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr10.134216437.-	chr10	134216437	134216438	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5735	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr6.45365110.-	chr6	45365110	45365111	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19322	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr10.135008784.-	chr10	135008784	135008785	-	0	NA	"intron (NM_152643, intron 9 of 29)"	"intron (NM_152643, intron 9 of 29)"	-34813	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr8.11312300.+	chr8	11312300	11312301	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11976	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr4.190662164.+	chr4	190662164	190662165	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199810	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr5.179119078.+	chr5	179119078	179119079	+	0	NA	Intergenic	AluY|SINE|Alu	-6852	NM_001024649	821	Hs.567968	NM_001024649	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
chr2.96149432.+	chr2	96149432	96149433	+	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	1047	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr4.114652885.-	chr4	114652885	114652886	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30198	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chrX.133565062.-	chrX	133565062	133565063	-	0	NA	Intergenic	AluSp|SINE|Alu	29113	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr17.77198152.-	chr17	77198152	77198153	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-127133	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr21.37627699.-	chr21	37627699	37627700	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64788	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chrX.132930099.-	chrX	132930099	132930100	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189574	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr16.31449000.-	chr16	31449000	31449001	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5348	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr21.47403574.-	chr21	47403574	47403575	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1911	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr19.2427755.-	chr19	2427755	2427756	-	0	NA	TTS (NM_032737)	TTS (NM_032737)	-120	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr1.178513355.+	chr1	178513355	178513356	+	0	NA	"intron (NR_033186, intron 1 of 2)"	AluSg|SINE|Alu	1424	NR_033186	400798	Hs.668085	NM_207467	ENSG00000184909	C1orf220	-	chromosome 1 open reading frame 220	miscRNA
chr6.119182302.+	chr6	119182302	119182303	+	0	NA	"intron (NM_017696, intron 6 of 11)"	MER52A|LTR|ERV1	-32939	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	protein-coding
chr9.94666423.-	chr9	94666423	94666424	-	0	NA	"intron (NM_004560, intron 1 of 8)"	AluSx|SINE|Alu	-46021	NM_004560	4920	Hs.644776	NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
chr1.206495729.+	chr1	206495729	206495730	+	0	NA	Intergenic	AluY|SINE|Alu	-20471	NM_001271870	647135	Hs.497575	NM_001271870		SRGAP2B	SRGAP2L|SRGAP2P2	SLIT-ROBO Rho GTPase activating protein 2B	protein-coding
chr11.109865782.-	chr11	109865782	109865783	-	0	NA	Intergenic	Intergenic	98305	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
chr3.67832234.-	chr3	67832234	67832235	-	0	NA	Intergenic	L1PA7|LINE|L1	127196	NM_001177599	8801	Hs.644919	NM_001177599	ENSG00000172340	SUCLG2	GBETA	"succinate-CoA ligase, GDP-forming, beta subunit"	protein-coding
chr2.170666394.-	chr2	170666394	170666395	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11072	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr5.22207045.+	chr5	22207045	22207046	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64584	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr17.12756021.+	chr17	12756021	12756022	+	0	NA	"intron (NM_014859, intron 1 of 20)"	AluY|SINE|Alu	63192	NM_014859	9912	Hs.499758	NM_014859	ENSG00000006740	ARHGAP44	NPC-A-10|RICH2	Rho GTPase activating protein 44	protein-coding
chr12.127944412.-	chr12	127944412	127944413	-	0	NA	Intergenic	Intergenic	421750	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr16.31103078.+	chr16	31103078	31103079	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2948	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr2.64811824.+	chr2	64811824	64811825	+	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	-22622	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chrX.137770386.-	chrX	137770386	137770387	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20432	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr17.34053870.+	chr17	34053870	34053871	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4809	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr20.58244245.+	chr20	58244245	58244246	+	0	NA	"intron (NM_080672, intron 1 of 12)"	MIRb|SINE|MIR	-7471	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr7.532142.-	chr7	532142	532143	-	0	NA	Intergenic	Intergenic	-27339	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr9.14830640.+	chr9	14830640	14830641	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51109	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr22.22550458.-	chr22	22550458	22550459	-	0	NA	Intergenic	Intergenic	48742	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr16.9185071.-	chr16	9185071	9185072	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	466	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr19.50614541.-	chr19	50614541	50614542	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1204	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr6.90062257.-	chr6	90062257	90062258	-	0	NA	"intron (NM_016021, intron 1 of 7)"	CpG	-362	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p	"ubiquitin-conjugating enzyme E2, J1"	protein-coding
chr2.90482943.-	chr2	90482943	90482944	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365032	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr13.114567011.-	chr13	114567011	114567012	-	0	NA	promoter-TSS (NM_000820)	promoter-TSS (NM_000820)	-35	NM_000820	2621	Hs.646346	NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest-specific 6	protein-coding
chr21.46973029.+	chr21	46973029	46973030	+	0	NA	Intergenic	Intergenic	-10644	NM_194255	6573	Hs.736903	NM_001205206	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	"solute carrier family 19 (folate transporter), member 1"	protein-coding
chr3.142319960.+	chr3	142319960	142319961	+	0	NA	"intron (NM_001145319, intron 1 of 15)"	AluY|SINE|Alu	4731	NM_001145319	5357	Hs.203637	NM_001145319	ENSG00000120756	PLS1	-	plastin 1	protein-coding
chr16.6394583.-	chr16	6394583	6394584	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluY|SINE|Alu	-325451	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr22.22550460.-	chr22	22550460	22550461	-	0	NA	Intergenic	Intergenic	48740	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr21.18887729.+	chr21	18887729	18887730	+	0	NA	"intron (NM_001207063, intron 1 of 4)"	AluJb|SINE|Alu	2505	NM_001207063	1525	Hs.627078	NM_001207063	ENSG00000154639	CXADR	CAR|CAR4/6|HCAR	coxsackie virus and adenovirus receptor	protein-coding
chr18.34900228.-	chr18	34900228	34900229	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	AluY|SINE|Alu	-245772	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr9.36859992.-	chr9	36859992	36859993	-	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	-4313	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr17.65335472.-	chr17	65335472	65335473	-	0	NA	Intergenic	AluSx|SINE|Alu	-27249	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr6.8388544.+	chr6	8388544	8388545	+	0	NA	Intergenic	LTR9|LTR|ERV1	47250	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr6.127845947.-	chr6	127845947	127845948	-	0	NA	Intergenic	AluY|SINE|Alu	5447	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr5.114712437.-	chr5	114712437	114712438	-	0	NA	Intergenic	AluYc3|SINE|Alu	79979	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr1.4656774.-	chr1	4656774	4656775	-	0	NA	Intergenic	Intergenic	58331	NM_001042478	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr5.176292825.-	chr5	176292825	176292826	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33508	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr21.47343950.+	chr21	47343950	47343951	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-57713	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr7.99630225.+	chr7	99630225	99630226	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17006	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr11.94278655.-	chr11	94278655	94278656	-	0	NA	"exon (NM_002033, exon 1 of 1)"	"exon (NM_002033, exon 1 of 1)"	-1638	NM_002033	2526	Hs.623098	NM_002033	ENSG00000196371	FUT4	CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1	"fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)"	protein-coding
chr16.58567429.-	chr16	58567429	58567430	-	0	NA	"intron (NM_001265612, intron 40 of 48)"	AluY|SINE|Alu	-15108	NR_002978	677827	Hs.688592	NR_002978		SNORA46	ACA46	"small nucleolar RNA, H/ACA box 46"	snoRNA
chr18.73357764.-	chr18	73357764	73357765	-	0	NA	Intergenic	L2|LINE|L2	218175	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr9.425256.+	chr9	425256	425257	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-45038	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr6.34759900.-	chr6	34759900	34759901	-	0	NA	"5' UTR (NM_017754, exon 1 of 21)"	"5' UTR (NM_017754, exon 1 of 21)"	-106	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr2.148597930.-	chr2	148597930	148597931	-	0	NA	Intergenic	AluJb|SINE|Alu	4640	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	"activin A receptor, type IIA"	protein-coding
chr11.9243375.+	chr11	9243375	9243376	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43498	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr16.29276636.+	chr16	29276636	29276637	+	0	NA	Intergenic	Intergenic	-36972	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr2.241813815.+	chr2	241813815	241813816	+	0	NA	"intron (NM_000030, intron 6 of 10)"	"intron (NM_000030, intron 6 of 10)"	5653	NM_000030	189	Hs.144567	NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6	alanine-glyoxylate aminotransferase	protein-coding
chr12.121338294.+	chr12	121338294	121338295	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3861	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr5.373846.-	chr5	373846	373847	-	0	NA	"intron (NM_001242412, intron 3 of 10)"	CpG	-69412	NM_138464	116349	Hs.446702	NM_138464	ENSG00000221990	C5orf55	-	chromosome 5 open reading frame 55	protein-coding
chr20.49348127.-	chr20	49348127	49348128	-	0	NA	promoter-TSS (NM_032521)	promoter-TSS (NM_032521)	-46	NM_032521	84612	Hs.589848	NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 partitioning defective 6 homolog beta (C. elegans)	protein-coding
chrX.81762748.-	chrX	81762748	81762749	-	0	NA	Intergenic	AluY|SINE|Alu	1000521	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr3.15431346.+	chr3	15431346	15431347	+	0	NA	Intergenic	AluSp|SINE|Alu	37696	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr3.124468917.+	chr3	124468917	124468918	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19704	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr14.107247430.-	chr14	107247430	107247431	-	0	NA	Intergenic	HERV3-int|LTR|ERV1	-308975	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	miscRNA
chr6.17450409.-	chr6	17450409	17450410	-	0	NA	"intron (NM_006366, intron 3 of 12)"	AluY|SINE|Alu	-56673	NM_006366	10486	Hs.132902	NM_006366	ENSG00000112186	CAP2	-	"CAP, adenylate cyclase-associated protein, 2 (yeast)"	protein-coding
chr16.3203721.-	chr16	3203721	3203722	-	0	NA	Intergenic	AluSg|SINE|Alu	-18587	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr19.14096038.-	chr19	14096038	14096039	-	0	NA	"intron (NM_002918, intron 2 of 20)"	AluSz6|SINE|Alu	-21096	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chr1.161879468.+	chr1	161879468	161879469	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114176	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr15.20733812.-	chr15	20733812	20733813	-	0	NA	Intergenic	Intergenic	-13302	NM_001145004	727832	Hs.569472	NM_001145004		GOLGA6L6	-	golgin A6 family-like 6	protein-coding
chr20.3221316.-	chr20	3221316	3221317	-	0	NA	Intergenic	Intergenic	1429	NM_001174089	83959	Hs.105607	NM_001174089	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	"solute carrier family 4, sodium borate transporter, member 11"	protein-coding
chr20.3190022.-	chr20	3190022	3190023	-	0	NA	promoter-TSS (NM_033453)	promoter-TSS (NM_033453)	-16	NM_033453	3704	Hs.415299	NM_001267623	ENSG00000125877	ITPA	C20orf37|HLC14-06-P|dJ794I6.3	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding
chr6.134589676.+	chr6	134589676	134589677	+	0	NA	"intron (NM_001143676, intron 1 of 13)"	AluY|SINE|Alu	49520	NM_001143676	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr2.127548523.-	chr2	127548523	127548524	-	0	NA	Intergenic	AluY|SINE|Alu	-135012	NM_002101	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr17.36905604.-	chr17	36905604	36905605	-	0	NA	Intergenic	CpG-10518	1046	NM_007144	7703	Hs.713595	NM_007144	ENSG00000056661	PCGF2	MEL-18|RNF110|ZNF144	polycomb group ring finger 2	protein-coding
chr18.73357739.+	chr18	73357739	73357740	+	0	NA	Intergenic	L2|LINE|L2	-218150	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chrX.20094614.-	chrX	20094614	20094615	-	0	NA	"intron (NM_152780, intron 1 of 15)"	AluSq|SINE|Alu	-40142	NM_001168467	256714	Hs.127951	NM_001168465	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
chr1.114299518.+	chr1	114299518	114299519	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2259	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr9.425253.-	chr9	425253	425254	-	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	45041	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr2.75147154.-	chr2	75147154	75147155	-	0	NA	Intergenic	CpG	38621	NM_019896	56655	Hs.469060	NM_019896		POLE4	YHHQ1|p12	"polymerase (DNA-directed), epsilon 4, accessory subunit"	protein-coding
chr1.10989819.+	chr1	10989819	10989820	+	0	NA	Intergenic	AluSq|SINE|Alu	52275	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chr10.44972091.-	chr10	44972091	44972092	-	0	NA	Intergenic	Intergenic	91546	NM_001033886	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr7.124427312.+	chr7	124427312	124427313	+	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	3552	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr12.133366776.+	chr12	133366776	133366777	+	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	-28325	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr13.100409998.+	chr13	100409998	100409999	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluSq|SINE|Alu	114685	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr18.76189788.-	chr18	76189788	76189789	-	0	NA	Intergenic	CpG	550487	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr10.38249302.-	chr10	38249302	38249303	-	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	-16151	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chrX.48703071.-	chrX	48703071	48703072	-	0	NA	Intergenic	AluSx|SINE|Alu	9035	NM_013271	27344	Hs.522640	NM_013271	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
chr2.232202226.-	chr2	232202226	232202227	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25193	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr21.45684284.+	chr21	45684284	45684285	+	0	NA	Intergenic	AluY|SINE|Alu	-2185	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr9.138065715.+	chr9	138065715	138065716	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7740	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr1.43081258.+	chr1	43081258	43081259	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42790	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr16.6394249.+	chr16	6394249	6394250	+	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluSq10|SINE|Alu	325117	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chrX.39680329.+	chrX	39680329	39680330	+	0	NA	Intergenic	CpG	276390	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr2.115328247.-	chr2	115328247	115328248	-	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	-109067	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chrX.48054616.-	chrX	48054616	48054617	-	0	NA	"intron (NM_021015, intron 2 of 8)"	"intron (NM_021015, intron 2 of 8)"	-1583	NM_175723	6758	Hs.166198	NM_021015	ENSG00000165583	SSX5	-	"synovial sarcoma, X breakpoint 5"	protein-coding
chr17.5307695.-	chr17	5307695	5307696	-	0	NA	"intron (NM_002532, intron 6 of 16)"	AluSq|SINE|Alu	15266	NM_001160266	84268	Hs.555866	NM_001160267	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
chr19.16738714.+	chr19	16738714	16738715	+	0	NA	"exon (NM_004831, exon 1 of 3)"	"exon (NM_004831, exon 1 of 3)"	301	NM_004831	9441	Hs.715040	NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
chr5.87926482.-	chr5	87926482	87926483	-	0	NA	"intron (NR_015436, intron 3 of 4)"	AluSx1|SINE|Alu	-36275	NR_030741	407047		NR_030741	ENSG00000207570	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2	microRNA 9-2	miscRNA
chr6.2221773.+	chr6	2221773	2221774	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24095	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr19.11043326.-	chr19	11043326	11043327	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3902	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr1.240947689.-	chr1	240947689	240947690	-	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	172227	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr13.45131234.+	chr13	45131234	45131235	+	0	NA	"intron (NM_183422, intron 1 of 2)"	AluSp|SINE|Alu	-18798	NR_038381	641467	Hs.624196	NR_038381		TSC22D1-AS1	-	TSC22D1 antisense RNA 1	miscRNA
chr20.14126734.-	chr20	14126734	14126735	-	0	NA	"intron (NM_080676, intron 3 of 16)"	AluY|SINE|Alu	-150588	NM_080676	140733	Hs.661576	NM_001033087	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
chr8.26241078.-	chr8	26241078	26241079	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-555	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr14.88652210.-	chr14	88652210	88652211	-	0	NA	"exon (NM_021161, exon 7 of 7)"	"exon (NM_021161, exon 7 of 7)"	-85045	NM_138318	54207	Hs.560255	NM_021161		KCNK10	K2p10.1|TREK-2|TREK2	"potassium channel, subfamily K, member 10"	protein-coding
chr16.48419718.-	chr16	48419718	48419719	-	0	NA	promoter-TSS (NM_003031)	promoter-TSS (NM_003031)	489	NM_003031	6477	Hs.706828	NM_001006610	ENSG00000196470	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
chr13.23713112.+	chr13	23713112	23713113	+	0	NA	Intergenic	AluY|SINE|Alu	-41948	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr1.2603355.-	chr1	2603355	2603356	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	38874	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr3.8721160.-	chr3	8721160	8721161	-	0	NA	Intergenic	Intergenic	27396	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr5.179170461.-	chr5	179170461	179170462	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-10610	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr7.810973.-	chr7	810973	810974	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43660	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr11.1366777.+	chr11	1366777	1366778	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	35839	NR_029409	255512	Hs.588291	NR_029409	ENSG00000255153	LOC255512	-	uncharacterized LOC255512	miscRNA
chr8.11739662.-	chr8	11739662	11739663	-	0	NA	Intergenic	AluSx1|SINE|Alu	14016	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr4.26862499.+	chr4	26862499	26862500	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	186	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr19.18717447.-	chr19	18717447	18717448	-	0	NA	"exon (NM_004750, exon 1 of 9)"	"exon (NM_004750, exon 1 of 9)"	-213	NM_004750	9244	Hs.114948	NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor-like factor 1	protein-coding
chr15.41539583.-	chr15	41539583	41539584	-	0	NA	"intron (NM_007236, intron 2 of 6)"	"intron (NM_007236, intron 2 of 6)"	-16146	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr19.4065794.-	chr19	4065794	4065795	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1022	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr1.32122098.-	chr1	32122098	32122099	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11260	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr3.14349525.+	chr3	14349525	14349526	+	0	NA	Intergenic	Intergenic	-94581	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr10.18948420.-	chr10	18948420	18948421	-	0	NA	"5' UTR (NM_178815, exon 1 of 6)"	"5' UTR (NM_178815, exon 1 of 6)"	-107	NM_178815	221079	Hs.25362	NM_178815		ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
chr18.77627575.+	chr18	77627575	77627576	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3907	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr19.7023140.-	chr19	7023140	7023141	-	0	NA	Intergenic	Intergenic	7454	NM_001136507	284428	Hs.717312	NM_001136507	ENSG00000237247	MBD3L5	-	methyl-CpG binding domain protein 3-like 5	protein-coding
chr22.42665923.-	chr22	42665923	42665924	-	0	NA	"non-coding (NR_036498, exon 1 of 2)"	"non-coding (NR_036498, exon 1 of 2)"	-164	NR_036498	388906	Hs.730075	NR_036498	ENSG00000182057	LOC388906	-	opioid growth factor receptor pseudogene	pseudo
chr10.134601793.-	chr10	134601793	134601794	-	0	NA	Intergenic	CpG-3497	2256	NM_177400	84504	Hs.134013	NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
chr5.56248290.+	chr5	56248290	56248291	+	0	NA	promoter-TSS (NM_152622)	promoter-TSS (NM_152622)	-336	NM_152622	166968	Hs.657594	NM_152622	ENSG00000155545	MIER3	-	"mesoderm induction early response 1, family member 3"	protein-coding
chr19.45660344.+	chr19	45660344	45660345	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3064	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr8.141158130.-	chr8	141158130	141158131	-	0	NA	"intron (NM_031466, intron 17 of 22)"	L2b|LINE|L2	-309731	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr2.159825244.+	chr2	159825244	159825245	+	0	NA	promoter-TSS (NM_001145909)	promoter-TSS (NM_001145909)	98	NM_033394	85461	Hs.61590	NM_001145909	ENSG00000115183	TANC1	ROLSB|TANC	"tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1"	protein-coding
chrX.86721039.-	chrX	86721039	86721040	-	0	NA	Intergenic	SVA_C|Other|Other	51676	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr8.6812640.+	chr8	6812640	6812641	+	0	NA	Intergenic	AluSp|SINE|Alu	-3519	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr10.104255212.+	chr10	104255212	104255213	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7300	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr10.6985576.+	chr10	6985576	6985577	+	0	NA	Intergenic	AluSx1|SINE|Alu	164016	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr5.473777.-	chr5	473777	473778	-	0	NA	promoter-TSS (NR_024158)	promoter-TSS (NR_024158)	697	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	miscRNA
chr17.3820300.+	chr17	3820300	3820301	+	0	NA	promoter-TSS (NM_002558)	promoter-TSS (NM_002558)	-340	NM_002558	5023	Hs.41735	NM_002558	ENSG00000108405	P2RX1	P2X1	"purinergic receptor P2X, ligand-gated ion channel, 1"	protein-coding
chr5.178157715.-	chr5	178157715	178157716	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	12	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chrY.13489472.-	chrY	13489472	13489473	-	0	NA	Intergenic	Intergenic	-1043917	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr12.112407456.-	chr12	112407456	112407457	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43567	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr5.43588013.+	chr5	43588013	43588014	+	0	NA	"intron (NR_073113, intron 1 of 2)"	AluY|SINE|Alu	-14778	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
chr19.34940131.+	chr19	34940131	34940132	+	0	NA	"intron (NM_005499, intron 8 of 16)"	AluSc|SINE|Alu	20863	NM_005499	10054	Hs.631580	NM_005499	ENSG00000126261	UBA2	ARX|SAE2	ubiquitin-like modifier activating enzyme 2	protein-coding
chr12.132116817.-	chr12	132116817	132116818	-	0	NA	Intergenic	L1ME1|LINE|L1	78815	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr6.168352134.+	chr6	168352134	168352135	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25485	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr12.124246614.-	chr12	124246614	124246615	-	0	NA	promoter-TSS (NM_207437)	promoter-TSS (NM_207437)	428	NM_207437	196385	Hs.622654	NM_207437	ENSG00000197653	DNAH10	-	"dynein, axonemal, heavy chain 10"	protein-coding
chr15.63229156.+	chr15	63229156	63229157	+	0	NA	Intergenic	AluSp|SINE|Alu	-105682	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr19.267166.+	chr19	267166	267167	+	0	NA	Intergenic	CpG	24003	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr11.71878752.+	chr11	71878752	71878753	+	0	NA	Intergenic	AluSx|SINE|Alu	-21850	NM_016725	2348	Hs.73769	NM_000802	ENSG00000110195	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
chr7.36845294.-	chr7	36845294	36845295	-	0	NA	Intergenic	AluJb|SINE|Alu	81140	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr1.28703558.+	chr1	28703558	28703559	+	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	7465	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr3.48533702.-	chr3	48533702	48533703	-	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	-7781	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr2.174828936.-	chr2	174828936	174828937	-	0	NA	promoter-TSS (NM_001017371)	promoter-TSS (NM_001017371)	-11	NM_001017371	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr8.21767372.-	chr8	21767372	21767373	-	0	NA	"exon (NM_003974, exon 5 of 5)"	"exon (NM_003974, exon 5 of 5)"	-3833	NM_003974	9046	Hs.71215	NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	"docking protein 2, 56kDa"	protein-coding
chr1.51444080.-	chr1	51444080	51444081	-	0	NA	Intergenic	Intergenic	-8438	NM_078626	1031	Hs.525324	NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	"cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)"	protein-coding
chr17.80687659.+	chr17	80687659	80687660	+	0	NA	Intergenic	CpG	-5793	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr2.232557252.+	chr2	232557252	232557253	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15983	NM_002823	5757	Hs.459927	NM_001099285	ENSG00000187514	PTMA	TMSA	"prothymosin, alpha"	protein-coding
chr16.87910818.-	chr16	87910818	87910819	-	0	NA	Intergenic	AluY|SINE|Alu	7718	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr16.79553768.-	chr16	79553768	79553769	-	0	NA	Intergenic	Intergenic	-80854	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	protein-coding
chr15.29130792.-	chr15	29130792	29130793	-	0	NA	Intergenic	CpG	36971	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr7.26216459.-	chr7	26216459	26216460	-	0	NA	"intron (NM_004289, intron 1 of 3)"	SVA_A|Other|Other	-23954	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
chr7.2944149.-	chr7	2944149	2944150	-	0	NA	Intergenic	Intergenic	60190	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr8.120878188.-	chr8	120878188	120878189	-	0	NA	Intergenic	AluSx1|SINE|Alu	7712	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr4.166248607.-	chr4	166248607	166248608	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	211	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.156593698.+	chr1	156593698	156593699	+	0	NA	"exon (NM_021817, exon 4 of 7)"	"exon (NM_021817, exon 4 of 7)"	4612	NM_021817	60484	Hs.410719	NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
chr15.42300388.-	chr15	42300388	42300389	-	0	NA	"intron (NM_001206670, intron 2 of 19)"	"intron (NM_001206670, intron 2 of 19)"	35633	NM_139265	30844	Hs.143703	NM_139265	ENSG00000103966	EHD4	PAST4	EH-domain containing 4	protein-coding
chr11.132663019.+	chr11	132663019	132663020	+	0	NA	"intron (NM_001012393, intron 2 of 7)"	"intron (NM_001012393, intron 2 of 7)"	150018	NM_002545	4978	Hs.4817	NM_001012393	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule-like	protein-coding
chr1.3022469.-	chr1	3022469	3022470	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	22070	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr12.112620031.-	chr12	112620031	112620032	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56682	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr18.47087146.+	chr18	47087146	47087147	+	0	NA	Intergenic	CpG	-1281	NM_006033	9388	Hs.465102	NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	"lipase, endothelial"	protein-coding
chr19.18180430.+	chr19	18180430	18180431	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17267	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr18.38415921.-	chr18	38415921	38415922	-	0	NA	Intergenic	AluY|SINE|Alu	-684640	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr4.30723145.-	chr4	30723145	30723146	-	0	NA	"exon (NM_001173523, exon 1 of 3)"	"exon (NM_001173523, exon 1 of 3)"	-1108	NM_032457	5099	Hs.479439	NM_001173523	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH	protocadherin 7	protein-coding
chr1.150551709.+	chr1	150551709	150551710	+	0	NA	"exon (NM_182763, exon 1 of 2)"	"exon (NM_182763, exon 1 of 2)"	505	NM_182763	4170	Hs.632486	NM_001197320	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	myeloid cell leukemia sequence 1 (BCL2-related)	protein-coding
chr9.133430110.+	chr9	133430110	133430111	+	0	NA	Intergenic	Intergenic	24771	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr1.8021829.-	chr1	8021829	8021830	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-115	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr6.150464966.-	chr6	150464966	150464967	-	0	NA	"intron (NM_030949, intron 1 of 3)"	CpG	-778	NM_030949	81706	Hs.486798	NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	"protein phosphatase 1, regulatory (inhibitor) subunit 14C"	protein-coding
chr3.122695693.-	chr3	122695693	122695694	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	712	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr6.12662844.-	chr6	12662844	12662845	-	0	NA	Intergenic	AluSg|SINE|Alu	54193	NM_001242648	221692	Hs.436996	NM_001242648		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
chr14.21741119.-	chr14	21741119	21741120	-	0	NA	Intergenic	AluSx1|SINE|Alu	3481	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr1.182234355.-	chr1	182234355	182234356	-	0	NA	Intergenic	AluJb|SINE|Alu	-126184	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr5.5935159.-	chr5	5935159	5935160	-	0	NA	Intergenic	AluY|SINE|Alu	-402246	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr12.46411966.+	chr12	46411966	46411967	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-27565	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr9.130734276.+	chr9	130734276	130734277	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8536	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr17.18755300.-	chr17	18755300	18755301	-	0	NA	Intergenic	AluSp|SINE|Alu	4312	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr8.10588139.-	chr8	10588139	10588140	-	0	NA	promoter-TSS (NM_031439)	promoter-TSS (NM_031439)	117	NM_031439	83595	Hs.709543	NM_031439	ENSG00000171056	SOX7	-	SRY (sex determining region Y)-box 7	protein-coding
chr22.50959129.+	chr22	50959129	50959130	+	0	NA	TTS (NM_014551)	TTS (NM_014551)	4904	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr15.90792632.+	chr15	90792632	90792633	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-132	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr13.99404770.+	chr13	99404770	99404771	+	0	NA	"intron (NM_005073, intron 1 of 22)"	CpG	159	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr20.36979351.+	chr20	36979351	36979352	+	0	NA	"intron (NM_004139, intron 3 of 14)"	"intron (NM_004139, intron 3 of 14)"	4537	NM_004139	3929	Hs.154078	NM_004139	ENSG00000129988	LBP	BPIFD2	lipopolysaccharide binding protein	protein-coding
chr2.203027106.+	chr2	203027106	203027107	+	0	NA	"intron (NM_001277372, intron 14 of 21)"	AluSx|SINE|Alu	76216	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr1.153961809.+	chr1	153961809	153961810	+	0	NA	Intergenic	AluY|SINE|Alu	-1430	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr17.3317538.-	chr17	3317538	3317539	-	0	NA	Intergenic	AluSc8|SINE|Alu	6324	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr22.45845300.-	chr22	45845300	45845301	-	0	NA	Intergenic	AluSz6|SINE|Alu	-35728	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11	RIB43A domain with coiled-coils 2	protein-coding
chr16.56998232.-	chr16	56998232	56998233	-	0	NA	"intron (NM_000078, intron 2 of 15)"	AluSx1|SINE|Alu	-2397	NM_000078	1071	Hs.89538	NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	"cholesteryl ester transfer protein, plasma"	protein-coding
chr6.167690364.-	chr6	167690364	167690365	-	0	NA	Intergenic	Intergenic	14439	NM_001143947	54346	Hs.567508	NM_001143947	ENSG00000112494	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A (C. elegans)	protein-coding
chr9.36596631.+	chr9	36596631	36596632	+	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	23772	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr7.36845266.-	chr7	36845266	36845267	-	0	NA	Intergenic	AluJb|SINE|Alu	81112	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr16.86016105.+	chr16	86016105	86016106	+	0	NA	Intergenic	Intergenic	83331	NM_002163	3394	Hs.137427	NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IRF-8	interferon regulatory factor 8	protein-coding
chr19.48836560.-	chr19	48836560	48836561	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7931	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr7.56143797.-	chr7	56143797	56143798	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11880	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr1.49045399.-	chr1	49045399	49045400	-	0	NA	"intron (NM_032785, intron 11 of 13)"	AluY|SINE|Alu	107523	NM_019073	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
chr22.46929369.+	chr22	46929369	46929370	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3698	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr11.118862306.-	chr11	118862306	118862307	-	0	NA	Intergenic	SVA_B|Other|Other	6546	NM_198489	338657	Hs.534613	NM_198489	ENSG00000186166	CCDC84	-	coiled-coil domain containing 84	protein-coding
chr19.48381903.-	chr19	48381903	48381904	-	0	NA	"intron (NM_003167, intron 4 of 5)"	AluSg4|SINE|Alu	-7751	NM_003167	6822	Hs.515835	NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa	"sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1"	protein-coding
chr9.130764274.+	chr9	130764274	130764275	+	0	NA	Intergenic	Intergenic	-21462	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr6.126111915.-	chr6	126111915	126111916	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-6	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr19.38836200.-	chr19	38836200	38836201	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9757	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr15.100080057.+	chr15	100080057	100080058	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26076	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chrX.54061557.-	chrX	54061557	54061558	-	0	NA	"intron (NM_015107, intron 2 of 21)"	AluSg|SINE|Alu	-8070	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr19.18547208.+	chr19	18547208	18547209	+	0	NA	"exon (NM_016368, exon 6 of 11)"	"exon (NM_016368, exon 6 of 11)"	911	NM_001253389	51477	Hs.405873	NM_001170938	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
chr14.97183892.-	chr14	97183892	97183893	-	0	NA	Intergenic	AluY|SINE|Alu	79792	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr17.34053789.-	chr17	34053789	34053790	-	0	NA	TTS (NM_001282)	TTS (NM_001282)	4890	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr8.27695256.+	chr8	27695256	27695257	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	93	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr2.25667215.-	chr2	25667215	25667216	-	0	NA	"intron (NM_001256303, intron 12 of 19)"	AluSx1|SINE|Alu	101756	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr9.113404479.+	chr9	113404479	113404480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26572	NM_001166281	4593	Hs.521653	NM_001166280	ENSG00000030304	MUSK	-	"muscle, skeletal, receptor tyrosine kinase"	protein-coding
chr2.45395919.-	chr2	45395919	45395920	-	0	NA	Intergenic	CpG	-86161	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	UNQ6975	-	putative uncharacterized protein UNQ6975/PRO21958	miscRNA
chr12.53448728.+	chr12	53448728	53448729	+	0	NA	promoter-TSS (NR_033854)	promoter-TSS (NR_033854)	-506	NR_033854	283335	Hs.657060	NR_033854	ENSG00000257337	LOC283335	-	uncharacterized LOC283335	miscRNA
chr14.51521346.-	chr14	51521346	51521347	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41076	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr13.79170274.+	chr13	79170274	79170275	+	0	NA	"intron (NR_047001, intron 3 of 5)"	CpG	7421	NM_006237	5457	Hs.654522	NM_006237	ENSG00000152192	POU4F1	BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
chr2.129354719.+	chr2	129354719	129354720	+	0	NA	Intergenic	Intergenic	-278548	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr1.6132065.+	chr1	6132065	6132066	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25891	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr5.170687208.-	chr5	170687208	170687209	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49080	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr7.150812750.-	chr7	150812750	150812751	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28924	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr9.4666429.+	chr9	4666429	4666430	+	0	NA	"intron (NM_001039395, intron 1 of 10)"	"intron (NM_001039395, intron 1 of 10)"	245	NM_001039395	55064	Hs.179615	NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6-like	protein-coding
chr19.15466578.+	chr19	15466578	15466579	+	0	NA	"intron (NM_005858, intron 13 of 13)"	AluSp|SINE|Alu	24034	NM_005858	10270	Hs.743430	NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A kinase (PRKA) anchor protein 8	protein-coding
chr11.7603348.-	chr11	7603348	7603349	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15069	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr20.46019533.+	chr20	46019533	46019534	+	0	NA	Intergenic	AluY|SINE|Alu	-34059	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr13.50138616.-	chr13	50138616	50138617	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21103	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr16.8974156.+	chr16	8974156	8974157	+	0	NA	Intergenic	Intergenic	-11293	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr11.31560738.-	chr11	31560738	31560739	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29441	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr15.92290010.+	chr15	92290010	92290011	+	0	NA	Intergenic	AluY|SINE|Alu	-106928	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr7.821295.-	chr7	821295	821296	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33899	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr21.45243660.+	chr21	45243660	45243661	+	0	NA	Intergenic	Intergenic	-11212	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr12.52241371.-	chr12	52241371	52241372	-	0	NA	Intergenic	CpG	15670	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
chr19.45678462.-	chr19	45678462	45678463	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3039	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr12.34492692.-	chr12	34492692	34492693	-	0	NA	Intergenic	GSATII|Satellite|centr	-317476	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.47682447.+	chr19	47682447	47682448	+	0	NA	"intron (NM_001145713, intron 6 of 6)"	AluY|SINE|Alu	-47752	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	-	microRNA 3190	miscRNA
chr3.98624725.+	chr3	98624725	98624726	+	0	NA	Intergenic	AluY|SINE|Alu	-4192	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr9.37466540.+	chr9	37466540	37466541	+	0	NA	Intergenic	CpG-26504	-1133	NM_014872	9925	Hs.161276	NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
chrM.6402.+	chrM	6402	6403	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.2435036.+	chr19	2435036	2435037	+	0	NA	"exon (NM_032737, exon 5 of 12)"	"exon (NM_032737, exon 5 of 12)"	-7161	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr3.184299413.-	chr3	184299413	184299414	-	0	NA	"3' UTR (NM_004443, exon 16 of 16)"	"3' UTR (NM_004443, exon 16 of 16)"	-19826	NM_004443	2049	Hs.2913	NM_004443	ENSG00000182580	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
chr7.91516796.+	chr7	91516796	91516797	+	0	NA	Intergenic	SVA_A|Other|Other	-6780	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr3.164852037.+	chr3	164852037	164852038	+	0	NA	Intergenic	AluY|SINE|Alu	-55754	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr12.79439002.+	chr12	79439002	79439003	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-431	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr4.133021289.+	chr4	133021289	133021290	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1049181	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr9.83293411.+	chr9	83293411	83293412	+	0	NA	Intergenic	AluSc|SINE|Alu	1010185	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr1.214724959.+	chr1	214724959	214724960	+	0	NA	promoter-TSS (NM_005401)	promoter-TSS (NM_005401)	65	NM_005401	5784	Hs.193557	NM_005401		PTPN14	PEZ|PTP36	"protein tyrosine phosphatase, non-receptor type 14"	protein-coding
chr1.197754712.-	chr1	197754712	197754713	-	0	NA	Intergenic	AluY|SINE|Alu	10089	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr16.30969083.-	chr16	30969083	30969084	-	0	NA	"5' UTR (NM_014712, exon 1 of 19)"	"5' UTR (NM_014712, exon 1 of 19)"	-468	NM_014712	9739	Hs.297483	NM_014712	ENSG00000099381	SETD1A	KMT2F|Set1|Set1A	SET domain containing 1A	protein-coding
chr14.101693645.-	chr14	101693645	101693646	-	0	NA	Intergenic	Intergenic	-157397	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr14.102000717.+	chr14	102000717	102000718	+	0	NA	Intergenic	Intergenic	21296	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr10.123791074.+	chr10	123791074	123791075	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42385	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr3.22843329.+	chr3	22843329	22843330	+	0	NA	Intergenic	L1PA2|LINE|L1	-401455	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr16.21200556.-	chr16	21200556	21200557	-	0	NA	Intergenic	AluY|SINE|Alu	-22312	NM_003460	7783	Hs.73982	NM_003460	ENSG00000103310	ZP2	ZPA|Zp-2	zona pellucida glycoprotein 2 (sperm receptor)	protein-coding
chr20.30432972.-	chr20	30432972	30432973	-	0	NA	"exon (NM_004118, exon 1 of 1)"	"exon (NM_004118, exon 1 of 1)"	-448	NM_004118	2307	Hs.516971	NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
chr12.8057421.-	chr12	8057421	8057422	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31471	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr6.170055451.+	chr6	170055451	170055452	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46708	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr10.12344456.-	chr10	12344456	12344457	-	0	NA	Intergenic	AluSc8|SINE|Alu	47127	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr19.34992706.+	chr19	34992706	34992707	+	0	NA	TTS (NM_001080436)	TTS (NM_001080436)	19826	NM_001080436	126374	Hs.585010	NM_001080436		WTIP	-	Wilms tumor 1 interacting protein	protein-coding
chr14.41599262.+	chr14	41599262	41599263	+	0	NA	Intergenic	MER70A|LTR|ERVL	-477502	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
chr5.65936257.+	chr5	65936257	65936258	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44081	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr13.50177031.+	chr13	50177031	50177032	+	0	NA	Intergenic	AluY|SINE|Alu	-17312	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr2.136760813.-	chr2	136760813	136760814	-	0	NA	Intergenic	AluSq2|SINE|Alu	17591	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr1.158150927.+	chr1	158150927	158150928	+	0	NA	"exon (NM_001766, exon 2 of 7)"	"exon (NM_001766, exon 2 of 7)"	1190	NM_001766	912	Hs.1799	NM_001766		CD1D	CD1A|R3	CD1d molecule	protein-coding
chr15.57662567.+	chr15	57662567	57662568	+	0	NA	Intergenic	AluSx|SINE|Alu	-6136	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr16.81173663.-	chr16	81173663	81173664	-	0	NA	"intron (NM_052892, intron 31 of 42)"	AluSq2|SINE|Alu	43683	NM_004483	2653	Hs.546256	NM_004483	ENSG00000140905	GCSH	GCE|NKH	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
chr1.24513596.+	chr1	24513596	24513597	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	169	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr7.5510993.+	chr7	5510993	5510994	+	0	NA	Intergenic	AluY|SINE|Alu	24555	NR_030318	693174		NR_030318		MIR589	MIRN589|hsa-mir-589	microRNA 589	miscRNA
chr16.88961909.+	chr16	88961909	88961910	+	0	NA	"intron (NM_175931, intron 2 of 10)"	CpG	-28841	NM_001080487	390748	Hs.730522	NM_001080487	ENSG00000205022	PABPN1L	PABPNL1|ePABP2	"poly(A) binding protein, nuclear 1-like (cytoplasmic)"	protein-coding
chr3.49757472.-	chr3	49757472	49757473	-	0	NA	promoter-TSS (NM_198722)	promoter-TSS (NM_198722)	234	NM_198722	386724	Hs.567903	NM_198722	ENSG00000176020	AMIGO3	AMIGO-3	adhesion molecule with Ig-like domain 3	protein-coding
chr3.14349486.-	chr3	14349486	14349487	-	0	NA	Intergenic	Intergenic	94620	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr9.96915810.+	chr9	96915810	96915811	+	0	NA	Intergenic	AluSx3|SINE|Alu	-22429	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	miscRNA
chr16.4065730.-	chr16	4065730	4065731	-	0	NA	"intron (NM_001116, intron 2 of 10)"	AluSx1|SINE|Alu	-100456	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr8.67618005.-	chr8	67618005	67618006	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6648	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chrX.18117015.+	chrX	18117015	18117016	+	0	NA	Intergenic	Intergenic	122009	NM_153346	139105	Hs.403802	NM_001184767	ENSG00000177324	BEND2	CXorf20	BEN domain containing 2	protein-coding
chr15.63673956.+	chr15	63673956	63673957	+	0	NA	"5' UTR (NM_206925, exon 1 of 10)"	"5' UTR (NM_206925, exon 1 of 10)"	119	NM_001218	771	Hs.210995	NM_001218		CA12	CAXII|HsT18816	carbonic anhydrase XII	protein-coding
chr11.915962.+	chr11	915962	915963	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-904	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chrX.23801521.-	chrX	23801521	23801522	-	0	NA	"exon (NM_002970, exon 1 of 6)"	"exon (NM_002970, exon 1 of 6)"	-246	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr3.28951287.-	chr3	28951287	28951288	-	0	NA	Intergenic	AluY|SINE|Alu	-334518	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr2.241340245.+	chr2	241340245	241340246	+	0	NA	Intergenic	Intergenic	-34870	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr3.29288108.-	chr3	29288108	29288109	-	0	NA	Intergenic	AluY|SINE|Alu	34695	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr7.13901620.-	chr7	13901620	13901621	-	0	NA	Intergenic	AluJb|SINE|Alu	-124519	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr22.21380211.+	chr22	21380211	21380212	+	0	NA	"intron (NM_001159554, intron 9 of 11)"	"intron (NM_001159554, intron 9 of 11)"	6636	NM_004173	6545	Hs.197116	NM_004173	ENSG00000099960	SLC7A4	CAT-4|CAT4|HCAT3|VH	"solute carrier family 7 (orphan transporter), member 4"	protein-coding
chr6.126111912.-	chr6	126111912	126111913	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-3	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr17.79564836.-	chr17	79564836	79564837	-	0	NA	"intron (NM_017921, intron 9 of 16)"	AluY|SINE|Alu	-39302	NM_017921	55666	Hs.464333	NM_017921	ENSG00000182446	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
chr16.21611234.+	chr16	21611234	21611235	+	0	NA	"intron (NM_001077180, intron 1 of 4)"	CpG	378	NM_016025	51108	Hs.279583	NM_001077180	ENSG00000197006	METTL9	DREV|DREV1|PAP1	methyltransferase like 9	protein-coding
chr19.3551987.-	chr19	3551987	3551988	-	0	NA	"intron (NM_021731, intron 1 of 10)"	L2b|LINE|L2	-5584	NM_174983	126321	Hs.656901	NM_001042680	ENSG00000161091	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
chr14.71374347.+	chr14	71374347	71374348	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	225	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr1.101786807.-	chr1	101786807	101786808	-	0	NA	Intergenic	AluY|SINE|Alu	-19644	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr6.132823936.+	chr6	132823936	132823937	+	0	NA	"intron (NM_003569, intron 2 of 9)"	AluY|SINE|Alu	10401	NM_003569	8417	Hs.605992	NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
chr4.114652851.-	chr4	114652851	114652852	-	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	-30232	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr20.31118095.+	chr20	31118095	31118096	+	0	NA	"intron (NM_001256798, intron 1 of 10)"	AluY|SINE|Alu	-46710	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr17.80616434.+	chr17	80616434	80616435	+	0	NA	"exon (NM_006822, exon 5 of 6)"	"exon (NM_006822, exon 5 of 6)"	-10023	NM_019613	56270	Hs.132161	NM_019613	ENSG00000141580	WDR45B	WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
chr1.80177668.+	chr1	80177668	80177669	+	0	NA	Intergenic	AluSx|SINE|Alu	-705173	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr12.118282811.-	chr12	118282811	118282812	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123217	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr6.57322562.-	chr6	57322562	57322563	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140140	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr16.57151552.-	chr16	57151552	57151553	-	0	NA	"intron (NM_152727, intron 5 of 15)"	"intron (NM_152727, intron 5 of 15)"	-25097	NM_152727	221184	Hs.736510	NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine II	protein-coding
chr18.33543838.+	chr18	33543838	33543839	+	0	NA	Intergenic	AluY|SINE|Alu	-8750	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr11.1036354.+	chr11	1036354	1036355	+	0	NA	"intron (NM_005961, intron 1 of 32)"	"intron (NM_005961, intron 1 of 32)"	352	NM_005961	4588	Hs.528432	NM_005961	ENSG00000184956	MUC6	MUC-6	"mucin 6, oligomeric mucus/gel-forming"	protein-coding
chr5.176292932.-	chr5	176292932	176292933	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33401	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr7.156750248.+	chr7	156750248	156750249	+	0	NA	"intron (NM_138400, intron 3 of 10)"	AluY|SINE|Alu	7831	NM_138400	64434	Hs.15825	NM_138400	ENSG00000146909	NOM1	C7orf3|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
chr22.51126241.-	chr22	51126241	51126242	-	0	NA	"intron (NM_033517, intron 9 of 21)"	AluY|SINE|Alu	-13171	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr5.22207165.-	chr5	22207165	22207166	-	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	-64704	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr4.100009896.+	chr4	100009896	100009897	+	0	NA	promoter-TSS (NM_000671)	promoter-TSS (NM_000671)	35	NM_000671	128	Hs.78989	NM_000671	ENSG00000197894	ADH5	ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR	"alcohol dehydrogenase 5 (class III), chi polypeptide"	protein-coding
chrX.48937641.+	chrX	48937641	48937642	+	0	NA	promoter-TSS (NM_001029896)	promoter-TSS (NM_001029896)	-77	NM_001029896	11152	Hs.632807	NM_001029896	ENSG00000196998	WDR45	NBIA4|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
chr11.71878751.+	chr11	71878751	71878752	+	0	NA	Intergenic	AluSx|SINE|Alu	-21851	NM_016725	2348	Hs.73769	NM_000802	ENSG00000110195	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
chr15.101457905.+	chr15	101457905	101457906	+	0	NA	Intergenic	Intergenic	-1555	NM_024652	79705	Hs.407918	NM_024652	ENSG00000154237	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
chr10.3594343.-	chr10	3594343	3594344	-	0	NA	Intergenic	Intergenic	-233130	NM_001160125	1316	Hs.709396	NM_001160124	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
chr12.49163964.+	chr12	49163964	49163965	+	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	1856	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr4.28187414.+	chr4	28187414	28187415	+	0	NA	Intergenic	AluY|SINE|Alu	-633790	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	miscRNA
chr16.88696977.-	chr16	88696977	88696978	-	0	NA	"exon (NM_144604, exon 17 of 18)"	"exon (NM_144604, exon 17 of 18)"	8024	NM_013278	27189	Hs.278911	NM_013278	ENSG00000124391	IL17C	CX2|IL-17C|IL-21	interleukin 17C	protein-coding
chr16.71414324.+	chr16	71414324	71414325	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21708	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr8.144161961.-	chr8	144161961	144161962	-	0	NA	Intergenic	Intergenic	-41282	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr7.29250891.+	chr7	29250891	29250892	+	0	NA	"intron (NM_004067, intron 1 of 12)"	AluY|SINE|Alu	16770	NM_004067	1124	Hs.710429	NM_001039936	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
chr9.92112367.+	chr9	92112367	92112368	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-17756	NM_001142287	10507	Hs.494406	NM_182635	ENSG00000187764	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D"	protein-coding
chr16.51183702.-	chr16	51183702	51183703	-	0	NA	"intron (NM_002968, intron 1 of 2)"	CpG	-806	NM_001127892	6299	Hs.135787	NM_001127892	ENSG00000103449	SALL1	HSAL1|Sal-1|TBS|ZNF794	sal-like 1 (Drosophila)	protein-coding
chr7.75156924.+	chr7	75156924	75156925	+	0	NA	"non-coding (NR_028059, exon 1 of 9)"	"non-coding (NR_028059, exon 1 of 9)"	529	NR_028059	5387	Hs.661055	XR_172481	ENSG00000127957	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	postmeiotic segregation increased 2 pseudogene 3	pseudo
chr1.937250.+	chr1	937250	937251	+	0	NA	Intergenic	CpG-24	-1698	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr16.15528771.+	chr16	15528771	15528772	+	0	NA	"intron (NM_033201, intron 1 of 5)"	CpG	446	NM_033201	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
chr19.6196975.+	chr19	6196975	6196976	+	0	NA	Intergenic	AluY|SINE|Alu	61265	NM_030924	81616	Hs.465720	NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
chr20.47088238.-	chr20	47088238	47088239	-	0	NA	Intergenic	Intergenic	-99584	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr17.29030317.+	chr17	29030317	29030318	+	0	NA	Intergenic	AluSx|SINE|Alu	-6309	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
chr9.6559780.+	chr9	6559780	6559781	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85912	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr10.134541006.+	chr10	134541006	134541007	+	0	NA	"intron (NM_005539, intron 9 of 15)"	"intron (NM_005539, intron 9 of 15)"	58531	NM_177400	84504	Hs.134013	NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
chr3.142607840.+	chr3	142607840	142607841	+	0	NA	"5' UTR (NM_013363, exon 1 of 9)"	"5' UTR (NM_013363, exon 1 of 9)"	205	NM_013363	26577	Hs.8944	NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
chr19.16851308.-	chr19	16851308	16851309	-	0	NA	"intron (NM_001007525, intron 4 of 18)"	AluSx1|SINE|Alu	-20521	NM_001007525	284434	Hs.406014	NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
chr1.197234019.-	chr1	197234019	197234020	-	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	3315	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr9.135947030.+	chr9	135947030	135947031	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9665	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr2.230932975.+	chr2	230932975	230932976	+	0	NA	"intron (NM_152527, intron 1 of 4)"	CpG	740	NM_152527	151473	Hs.504317	NM_152527	ENSG00000163053	SLC16A14	MCT14	"solute carrier family 16, member 14 (monocarboxylic acid transporter 14)"	protein-coding
chr12.112511383.+	chr12	112511383	112511384	+	0	NA	"intron (NM_024953, intron 9 of 23)"	AluY|SINE|Alu	35252	NM_024953	80018	Hs.530941	NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	"N(alpha)-acetyltransferase 25, NatB auxiliary subunit"	protein-coding
chr19.18253593.-	chr19	18253593	18253594	-	0	NA	"intron (NM_015016, intron 20 of 26)"	AluJb|SINE|Alu	10395	NR_073517	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr19.17585841.+	chr19	17585841	17585842	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4541	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr9.88491240.-	chr9	88491240	88491241	-	0	NA	Intergenic	AluYc|SINE|Alu	64817	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr2.17721615.-	chr2	17721615	17721616	-	0	NA	promoter-TSS (NM_003385)	promoter-TSS (NM_003385)	192	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
chr9.108210394.+	chr9	108210394	108210395	+	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	69	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr17.71377182.+	chr17	71377182	71377183	+	0	NA	"intron (NM_001144952, intron 33 of 44)"	"intron (NM_001144952, intron 33 of 44)"	-69039	NM_012121	23580	Hs.3903	NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
chr2.44294800.-	chr2	44294800	44294801	-	0	NA	Intergenic	SVA_D|Other|Other	71656	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr17.21909280.+	chr17	21909280	21909281	+	0	NA	"intron (NR_027084, intron 1 of 1)"	"intron (NR_027084, intron 1 of 1)"	5218	NR_027084	284124	Hs.310247	NR_027084		FLJ36000	-	uncharacterized FLJ36000	miscRNA
chr10.12223697.-	chr10	12223697	12223698	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14264	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr1.5005149.+	chr1	5005149	5005150	+	0	NA	Intergenic	Intergenic	290044	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr16.3109381.+	chr16	3109381	3109382	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5932	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr2.10424718.-	chr2	10424718	10424719	-	0	NA	Intergenic	Intergenic	18312	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr16.71647914.-	chr16	71647914	71647915	-	0	NA	Intergenic	AluSz|SINE|Alu	12142	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr4.7690954.-	chr4	7690954	7690955	-	0	NA	"intron (NM_020777, intron 10 of 26)"	"intron (NM_020777, intron 10 of 26)"	64863	NR_026892	84740	Hs.663029	NM_032654		AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	miscRNA
chr9.26387243.+	chr9	26387243	26387244	+	0	NA	Intergenic	AluY|SINE|Alu	320570	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr1.32122115.+	chr1	32122115	32122116	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11277	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr4.166248597.+	chr4	166248597	166248598	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-221	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr2.198058464.+	chr2	198058464	198058465	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117057	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr15.89721835.+	chr15	89721835	89721836	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43087	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr17.1165721.-	chr17	1165721	1165722	-	0	NA	Intergenic	AluSg|SINE|Alu	8137	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr5.3764248.+	chr5	3764248	3764249	+	0	NA	Intergenic	Intergenic	168080	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr11.3224540.-	chr11	3224540	3224541	-	0	NA	Intergenic	CpG	15022	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr10.81319162.+	chr10	81319162	81319163	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	1001	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr9.130734378.-	chr9	130734378	130734379	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8434	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr1.16961156.+	chr1	16961156	16961157	+	0	NA	Intergenic	AluSx|SINE|Alu	-3755	NR_026752	84809	Hs.733729	NR_026752	ENSG00000215908	CROCCP2	CROCCL1	"ciliary rootlet coiled-coil, rootletin pseudogene 2"	pseudo
chrX.21676546.-	chrX	21676546	21676547	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	98	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr5.148988200.+	chr5	148988200	148988201	+	0	NA	"intron (NM_001001669, intron 3 of 12)"	AluSg|SINE|Alu	27065	NM_001001669	389337	Hs.256206	NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding
chr17.4926595.-	chr17	4926595	4926596	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12132	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr8.145988013.+	chr8	145988013	145988014	+	0	NA	Intergenic	Intergenic	-7043	NM_138367	90987	Hs.534516	NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
chr12.51681486.-	chr12	51681486	51681487	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17284	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr11.9346810.-	chr11	9346810	9346811	-	0	NA	Intergenic	AluSx1|SINE|Alu	10495	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chr7.73322441.-	chr7	73322441	73322442	-	0	NA	Intergenic	Intergenic	-46952	NM_182504	135886	Hs.647026	NM_182504	ENSG00000175877	WBSCR28	-	Williams-Beuren syndrome chromosome region 28	protein-coding
chr2.239047380.-	chr2	239047380	239047381	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-17	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr17.47363949.+	chr17	47363949	47363950	+	0	NA	Intergenic	AluSx|SINE|Alu	38344	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chrX.89718080.-	chrX	89718080	89718081	-	0	NA	Intergenic	AluY|SINE|Alu	-541140	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	"TGFB-induced factor homeobox 2-like, X-linked"	protein-coding
chr22.43238150.-	chr22	43238150	43238151	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15258	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr6.45365123.-	chr6	45365123	45365124	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19335	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr19.58310330.+	chr19	58310330	58310331	+	0	NA	Intergenic	AluY|SINE|Alu	15951	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr1.151966633.+	chr1	151966633	151966634	+	0	NA	promoter-TSS (NM_002966)	promoter-TSS (NM_002966)	81	NM_002966	6281	Hs.143873	NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
chr20.10606822.-	chr20	10606822	10606823	-	0	NA	Intergenic	AluY|SINE|Alu	-47872	NM_000214	182	Hs.626544	NM_000214	ENSG00000101384	JAG1	AGS|AHD|AWS|CD339|HJ1|JAGL1	jagged 1	protein-coding
chr14.101892688.-	chr14	101892688	101892689	-	0	NA	Intergenic	AluY|SINE|Alu	-129325	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr12.26964566.+	chr12	26964566	26964567	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21565	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr20.30161026.-	chr20	30161026	30161027	-	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	-40	NR_046853	100874042	Hs.743198	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	miscRNA
chr3.170096431.-	chr3	170096431	170096432	-	0	NA	"intron (NM_001145097, intron 1 of 5)"	AluSx1|SINE|Alu	-19020	NM_001248008	6498	Hs.581632	NM_001145097	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like oncogene	protein-coding
chr2.242500487.+	chr2	242500487	242500488	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1929	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chrX.69569698.-	chrX	69569698	69569699	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59819	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr3.31574018.-	chr3	31574018	31574019	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	473	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr13.111268056.-	chr13	111268056	111268057	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-125	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr13.33775017.-	chr13	33775017	33775018	-	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	-5170	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr9.8857409.-	chr9	8857409	8857410	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123463	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr19.33776891.-	chr19	33776891	33776892	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16539	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr2.101214324.+	chr2	101214324	101214325	+	0	NA	Intergenic	AluY|SINE|Alu	34906	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr6.108615123.-	chr6	108615123	108615124	-	0	NA	promoter-TSS (NM_145315)	promoter-TSS (NM_145315)	975	NM_145315	246269	Hs.259666	NM_145315		LACE1	AFG1	lactation elevated 1	protein-coding
chr18.11959855.+	chr18	11959855	11959856	+	0	NA	Intergenic	SVA_D|Other|Other	-21572	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr8.27695249.+	chr8	27695249	27695250	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	100	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr8.11725225.+	chr8	11725225	11725226	+	0	NA	"intron (NM_147780, intron 1 of 11)"	CpG	421	NM_147781	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr19.45660347.-	chr19	45660347	45660348	-	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	-3061	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chrX.152916375.-	chrX	152916375	152916376	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8478	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr4.96097981.+	chr4	96097981	96097982	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85339	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr6.89378026.-	chr6	89378026	89378027	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295322	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr17.43255879.+	chr17	43255879	43255880	+	0	NA	Intergenic	AluY|SINE|Alu	17615	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr1.156030267.-	chr1	156030267	156030268	-	0	NA	promoter-TSS (NM_020387)	promoter-TSS (NM_020387)	699	NM_020387	57111	Hs.632469	NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	"RAB25, member RAS oncogene family"	protein-coding
chr17.65774772.+	chr17	65774772	65774773	+	0	NA	Intergenic	AluSx|SINE|Alu	37986	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr7.72432625.-	chr7	72432625	72432626	-	0	NA	Intergenic	AluY|SINE|Alu	7323	NR_033323	260294	Hs.510927	NM_001039487	ENSG00000106133	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	"NOP2/Sun domain family, member 5 pseudogene 2"	pseudo
chr3.61188819.+	chr3	61188819	61188820	+	0	NA	"intron (NM_001166243, intron 1 of 9)"	AluY|SINE|Alu	48314	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr8.56098979.+	chr8	56098979	56098980	+	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	83962	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr2.70416494.+	chr2	70416494	70416495	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	1657	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr12.121346469.-	chr12	121346469	121346470	-	0	NA	Intergenic	AluSp|SINE|Alu	4314	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr16.10077585.-	chr16	10077585	10077586	-	0	NA	"intron (NM_001134408, intron 2 of 13)"	AluY|SINE|Alu	-198339	NM_001134408	2903	Hs.411472	NM_000833	ENSG00000183454	GRIN2A	EPND|GluN2A|NMDAR2A|NR2A	"glutamate receptor, ionotropic, N-methyl D-aspartate 2A"	protein-coding
chr7.23287658.-	chr7	23287658	23287659	-	0	NA	"intron (NM_001005340, intron 1 of 10)"	"intron (NM_001005340, intron 1 of 10)"	-1342	NM_002510	10457	Hs.190495	NM_001005340	ENSG00000136235	GPNMB	HGFIN|NMB	glycoprotein (transmembrane) nmb	protein-coding
chr18.69175945.+	chr18	69175945	69175946	+	0	NA	Intergenic	AluY|SINE|Alu	70247	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr2.91757873.+	chr2	91757873	91757874	+	0	NA	Intergenic	Intergenic	90102	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr13.114803379.+	chr13	114803379	114803380	+	0	NA	"intron (NM_007368, intron 4 of 23)"	"intron (NM_007368, intron 4 of 23)"	94716	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr6.52930566.+	chr6	52930566	52930567	+	0	NA	"5' UTR (NM_033480, exon 1 of 13)"	"5' UTR (NM_033480, exon 1 of 13)"	309	NM_033480	26268	Hs.216653	NM_012347	ENSG00000112146	FBXO9	FBX9|NY-REN-57|VCIA1|dJ341E18.2	F-box protein 9	protein-coding
chr10.135075430.-	chr10	135075430	135075431	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14306	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr11.70975630.-	chr11	70975630	70975631	-	0	NA	Intergenic	MLT2B3|LTR|ERVL	39822	NM_012309	22941	Hs.268726	NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
chr16.57323351.+	chr16	57323351	57323352	+	0	NA	Intergenic	AluY|SINE|Alu	-4767	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
chr2.240980337.-	chr2	240980337	240980338	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2062	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr8.141523813.+	chr8	141523813	141523814	+	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	1732	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr15.92290108.+	chr15	92290108	92290109	+	0	NA	Intergenic	AluY|SINE|Alu	-106830	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr13.81972941.+	chr13	81972941	81972942	+	0	NA	Intergenic	AluY|SINE|Alu	-1057855	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr1.227498646.+	chr1	227498646	227498647	+	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	7180	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chrX.24027827.-	chrX	24027827	24027828	-	0	NA	"intron (NM_030624, intron 2 of 3)"	AluSx1|SINE|Alu	-17476	NM_030624	80311	Hs.495854	NM_030624	ENSG00000174010	KLHL15	-	kelch-like family member 15	protein-coding
chr10.59351206.-	chr10	59351206	59351207	-	0	NA	Intergenic	AluY|SINE|Alu	286887	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr16.9185077.+	chr16	9185077	9185078	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-460	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr10.123828874.-	chr10	123828874	123828875	-	0	NA	"intron (NM_206861, intron 3 of 19)"	AluY|SINE|Alu	-80185	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr6.143226992.-	chr6	143226992	143226993	-	0	NA	"intron (NM_006734, intron 1 of 9)"	AluSz6|SINE|Alu	-39346	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chr6.55774922.+	chr6	55774922	55774923	+	0	NA	Intergenic	SVA_D|Other|Other	-34547	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr21.19796027.-	chr21	19796027	19796028	-	0	NA	Intergenic	AluY|SINE|Alu	20057	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chr15.29111315.-	chr15	29111315	29111316	-	0	NA	Intergenic	AluY|SINE|Alu	17494	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr9.90884988.+	chr9	90884988	90884989	+	0	NA	Intergenic	AluY|SINE|Alu	-118309	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr19.18180374.+	chr19	18180374	18180375	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17323	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr19.2400839.-	chr19	2400839	2400840	-	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	-11055	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chrX.91037177.+	chrX	91037177	91037178	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2917	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr10.59351198.+	chr10	59351198	59351199	+	0	NA	Intergenic	AluY|SINE|Alu	-286879	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr13.48030589.-	chr13	48030589	48030590	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544873	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr9.140117191.+	chr9	140117191	140117192	+	0	NA	Intergenic	CpG	-1416	NM_031297	727800	Hs.512767	NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
chr1.211468041.+	chr1	211468041	211468042	+	0	NA	"intron (NM_001136225, intron 8 of 10)"	AluY|SINE|Alu	-31916	NM_004619	7188	Hs.523930	NM_001033910	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor-associated factor 5	protein-coding
chr4.39399518.+	chr4	39399518	39399519	+	0	NA	Intergenic	AluSx|SINE|Alu	-8955	NM_175737	152831	Hs.90756	NM_175737	ENSG00000134962	KLB	BKL	klotho beta	protein-coding
chr9.81957079.-	chr9	81957079	81957080	-	0	NA	Intergenic	AluYc|SINE|Alu	229799	NM_007005	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4	"transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)"	protein-coding
chr1.6471005.+	chr1	6471005	6471006	+	0	NA	Intergenic	AluSz|SINE|Alu	8974	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr12.118282901.-	chr12	118282901	118282902	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123127	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr12.133481303.+	chr12	133481303	133481304	+	0	NA	Intergenic	AluSg|SINE|Alu	-17099	NM_001161346	55743	Hs.720197	NM_001161344	ENSG00000072609	CHFR	RNF116|RNF196	"checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase"	protein-coding
chr2.44294806.-	chr2	44294806	44294807	-	0	NA	Intergenic	SVA_D|Other|Other	71662	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr2.905544.-	chr2	905544	905545	-	0	NA	Intergenic	Intergenic	41010	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr7.1547609.+	chr7	1547609	1547610	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3591	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr6.114067450.-	chr6	114067450	114067451	-	0	NA	Intergenic	AluY|SINE|Alu	111077	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr1.28703594.-	chr1	28703594	28703595	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7501	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr19.11060472.-	chr19	11060472	11060473	-	0	NA	Intergenic	AluY|SINE|Alu	11126	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr1.161013601.-	chr1	161013601	161013602	-	0	NA	"intron (NM_207005, intron 1 of 10)"	AluSg|SINE|Alu	-1126	NM_001276373	7391	Hs.414880	NM_001276373	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
chr16.33294000.+	chr16	33294000	33294001	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4702	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr10.64894718.+	chr10	64894718	64894719	+	0	NA	"intron (NM_030759, intron 1 of 3)"	AluJb|SINE|Alu	1711	NM_030759	29982	Hs.449628	NM_030759	ENSG00000148572	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
chr7.5574454.+	chr7	5574454	5574455	+	0	NA	Intergenic	AluJb|SINE|Alu	-4222	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr22.22259639.+	chr22	22259639	22259640	+	0	NA	Intergenic	AluSq2|SINE|Alu	-37669	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr1.16166984.+	chr1	16166984	16166985	+	0	NA	"intron (NR_024279, intron 1 of 1)"	AluSc8|SINE|Alu	-7375	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chr12.20930605.+	chr12	20930605	20930606	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-33033	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr12.2858373.-	chr12	2858373	2858374	-	0	NA	Intergenic	L1P3|LINE|L1	-22462	NR_033958	283440	Hs.658536	NR_033958	ENSG00000255669	LOC283440	-	uncharacterized LOC283440	miscRNA
chr4.68566914.+	chr4	68566914	68566915	+	0	NA	promoter-TSS (NR_015439)	promoter-TSS (NR_015439)	-25	NM_018227	55236	Hs.212774	NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin-like modifier activating enzyme 6	protein-coding
chrX.91037234.+	chrX	91037234	91037235	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2974	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr16.77249242.+	chr16	77249242	77249243	+	0	NA	Intergenic	AluY|SINE|Alu	15893	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr10.42599676.+	chr10	42599676	42599677	+	0	NA	Intergenic	HSATII|Satellite|Satellite	263817	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr8.11556183.-	chr8	11556183	11556184	-	0	NA	Intergenic	Intergenic	5534	NM_002052	2626	Hs.243987	NM_002052	ENSG00000136574	GATA4	ASD2|VSD1	GATA binding protein 4	protein-coding
chr4.123925513.+	chr4	123925513	123925514	+	0	NA	"intron (NM_145207, intron 10 of 15)"	L1PA3|LINE|L1	81288	NM_145207	166378	Hs.709648	NM_145207		SPATA5	AFG2|SPAF	spermatogenesis associated 5	protein-coding
chr16.89034076.+	chr16	89034076	89034077	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9428	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr19.34814144.+	chr19	34814144	34814145	+	0	NA	"intron (NM_014686, intron 3 of 13)"	AluYf5|SINE|Alu	-41501	NM_001184722	2821	Hs.466471	NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
chr12.112161426.-	chr12	112161426	112161427	-	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_F|Other|Other	-37569	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr3.129048075.-	chr3	129048075	129048076	-	0	NA	Intergenic	AluY|SINE|Alu	12955	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr17.78888145.-	chr17	78888145	78888146	-	0	NA	"intron (NM_020761, intron 21 of 33)"	MER52A|LTR|ERV1	77496	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr20.1165942.+	chr20	1165942	1165943	+	0	NA	promoter-TSS (NM_018354)	promoter-TSS (NM_018354)	-825	NM_018354	55321	Hs.516834	NM_018354	ENSG00000125895	TMEM74B	C20orf46	transmembrane protein 74B	protein-coding
chr15.93372510.-	chr15	93372510	93372511	-	0	NA	Intergenic	AluSg|SINE|Alu	-33796	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr12.44230067.-	chr12	44230067	44230068	-	0	NA	"intron (NM_032256, intron 1 of 7)"	CpG	-105	NM_032256	84216	Hs.444668	NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
chr6.41339356.-	chr6	41339356	41339357	-	0	NA	Intergenic	CpG	-35828	NM_001199510	9436	Hs.194721	NM_001199509	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
chr21.42486449.+	chr21	42486449	42486450	+	0	NA	Intergenic	AluSx|SINE|Alu	33542	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	miscRNA
chr10.324389.-	chr10	324389	324390	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98455	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr19.19410444.+	chr19	19410444	19410445	+	0	NA	"intron (NM_172231, intron 7 of 13)"	AluY|SINE|Alu	20877	NM_172231	57794	Hs.515274	NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G patch domain containing 1	protein-coding
chr5.133831454.-	chr5	133831454	133831455	-	0	NA	Intergenic	Intergenic	30344	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr11.1122354.-	chr11	1122354	1122355	-	0	NA	Intergenic	Intergenic	-47479	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chrX.152916370.-	chrX	152916370	152916371	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8473	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr6.89378019.+	chr6	89378019	89378020	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295329	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr2.237011030.-	chr2	237011030	237011031	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluY|SINE|Alu	-65622	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr18.11959813.+	chr18	11959813	11959814	+	0	NA	Intergenic	SVA_D|Other|Other	-21614	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr1.213224626.+	chr1	213224626	213224627	+	0	NA	promoter-TSS (NM_001136138)	promoter-TSS (NM_001136138)	38	NM_001136138	26750	Hs.591416	NM_001136138		RPS6KC1	RPK118|humS6PKh1	"ribosomal protein S6 kinase, 52kDa, polypeptide 1"	protein-coding
chr17.7561691.+	chr17	7561691	7561692	+	0	NA	TTS (NM_001678)	TTS (NM_001678)	7437	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr12.56394836.+	chr12	56394836	56394837	+	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	3793	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr10.120841975.+	chr10	120841975	120841976	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1641	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr6.134847836.-	chr6	134847836	134847837	-	0	NA	Intergenic	AluY|SINE|Alu	-88308	NR_038218	154092	Hs.223718	NR_038216		LOC154092	-	uncharacterized LOC154092	miscRNA
chr2.55647016.+	chr2	55647016	55647017	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	41	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr7.1286214.-	chr7	1286214	1286215	-	0	NA	Intergenic	CpG	-13560	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr20.4729566.+	chr20	4729566	4729567	+	0	NA	Intergenic	Intergenic	-8252	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr2.20424103.-	chr2	20424103	20424104	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-824	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr21.31598715.+	chr21	31598715	31598716	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10246	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr11.69189594.-	chr11	69189594	69189595	-	0	NA	Intergenic	Intergenic	-127972	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr14.93336021.+	chr14	93336021	93336022	+	0	NA	Intergenic	AluY|SINE|Alu	-53424	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
chrX.53123441.-	chrX	53123441	53123442	-	0	NA	Intergenic	CpG	-11899	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.104555160.+	chr12	104555160	104555161	+	0	NA	Intergenic	AluY|SINE|Alu	-23120	NM_006166	4801	Hs.84928	NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	"nuclear transcription factor Y, beta"	protein-coding
chr1.4282131.+	chr1	4282131	4282132	+	0	NA	Intergenic	AluSg7|SINE|Alu	-189980	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	miscRNA
chr8.26371353.+	chr8	26371353	26371354	+	0	NA	promoter-TSS (NM_001197293)	promoter-TSS (NM_001197293)	130	NM_007257	10687	Hs.591838	NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	paraneoplastic Ma antigen 2	protein-coding
chr3.57630949.-	chr3	57630949	57630950	-	0	NA	"intron (NM_152678, intron 11 of 19)"	AluSg|SINE|Alu	47734	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
chr7.5334611.-	chr7	5334611	5334612	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12050	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr11.62551821.-	chr11	62551821	62551822	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3053	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr7.532143.+	chr7	532143	532144	+	0	NA	Intergenic	Intergenic	27338	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr15.90792651.-	chr15	90792651	90792652	-	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	113	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr16.31449037.-	chr16	31449037	31449038	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5311	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr1.110881135.-	chr1	110881135	110881136	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-658	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr1.180471430.-	chr1	180471430	180471431	-	0	NA	"5' UTR (NM_032360, exon 1 of 8)"	"5' UTR (NM_032360, exon 1 of 8)"	-592	NM_032360	84320	Hs.200051	NM_032360	ENSG00000135847	ACBD6	-	acyl-CoA binding domain containing 6	protein-coding
chr5.176821879.+	chr5	176821879	176821880	+	0	NA	"intron (NM_003052, intron 10 of 12)"	AluSq|SINE|Alu	5758	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
chr11.44361774.+	chr11	44361774	44361775	+	0	NA	Intergenic	AluJb|SINE|Alu	-30058	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr17.2726592.+	chr17	2726592	2726593	+	0	NA	"intron (NM_015085, intron 2 of 24)"	"intron (NM_015085, intron 2 of 24)"	26860	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr11.2213888.-	chr11	2213888	2213889	-	0	NA	Intergenic	Intergenic	-19595	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr16.54578152.+	chr16	54578152	54578153	+	0	NA	Intergenic	AluYa5|SINE|Alu	-257774	NM_024336	79191	Hs.499205	NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
chr8.141523814.-	chr8	141523814	141523815	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1733	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr9.134449918.+	chr9	134449918	134449919	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43256	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chrX.129230994.+	chrX	129230994	129230995	+	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	13481	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr19.51296707.-	chr19	51296707	51296708	-	0	NA	"intron (NM_033068, intron 6 of 10)"	AluSx|SINE|Alu	-3035	NM_033068	93650	Hs.293394	NM_033068	ENSG00000142513	ACPT	-	"acid phosphatase, testicular"	protein-coding
chr2.120964344.+	chr2	120964344	120964345	+	0	NA	Intergenic	Intergenic	16640	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr19.41929091.+	chr19	41929091	41929092	+	0	NA	"intron (NM_000709, intron 8 of 8)"	"intron (NM_000709, intron 8 of 8)"	5544	NM_198540	374907	Hs.441681	NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8"	protein-coding
chr13.28917454.-	chr13	28917454	28917455	-	0	NA	"intron (NM_002019, intron 16 of 29)"	AluSq2|SINE|Alu	-151811	NM_001160031	2321	Hs.594454	NM_001159920	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms-related tyrosine kinase 1	protein-coding
chr5.170687173.+	chr5	170687173	170687174	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49115	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr22.50959132.-	chr22	50959132	50959133	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4901	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr15.83630888.+	chr15	83630888	83630889	+	0	NA	Intergenic	AluY|SINE|Alu	-9412	NM_199330	9455	Hs.578443	NM_004839	ENSG00000103942	HOMER2	ACPD|CPD|HOMER-2|VESL-2	homer homolog 2 (Drosophila)	protein-coding
chr17.76128255.-	chr17	76128255	76128256	-	0	NA	"intron (NM_152468, intron 3 of 15)"	CpG-11187	-233	NM_007267	11322	Hs.632227	NM_001127198	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P	transmembrane channel-like 6	protein-coding
chr10.76198273.+	chr10	76198273	76198274	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262026	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr8.54998369.-	chr8	54998369	54998370	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16208	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr8.144513087.+	chr8	144513087	144513088	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-485	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr13.114929688.-	chr13	114929688	114929689	-	0	NA	Intergenic	Intergenic	31593	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr17.30414156.-	chr17	30414156	30414157	-	0	NA	Intergenic	FLAM_A|SINE|Alu	-46801	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
chr14.105158909.-	chr14	105158909	105158910	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2966	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr22.18532544.+	chr22	18532544	18532545	+	0	NA	Intergenic	AluSx1|SINE|Alu	20393	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr15.50998354.-	chr15	50998354	50998355	-	0	NA	Intergenic	AluYa8|SINE|Alu	19342	NM_017672	54822	Hs.512894	NM_017672		TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK	"transient receptor potential cation channel, subfamily M, member 7"	protein-coding
chr18.12006947.-	chr18	12006947	12006948	-	0	NA	"intron (NM_014214, intron 2 of 7)"	AluSx3|SINE|Alu	-25520	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr17.1226042.+	chr17	1226042	1226043	+	0	NA	Intergenic	Intergenic	43085	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr1.54775678.+	chr1	54775678	54775679	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96301	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr16.70356435.-	chr16	70356435	70356436	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23373	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr21.43198237.+	chr21	43198237	43198238	+	0	NA	Intergenic	Intergenic	-10988	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr2.71561976.+	chr2	71561976	71561977	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3091	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr10.64976203.+	chr10	64976203	64976204	+	0	NA	"intron (NM_004241, intron 2 of 22)"	AluY|SINE|Alu	52779	NM_004241	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	RP11-10C13.2|TRIP8	jumonji domain containing 1C	protein-coding
chr19.586942.+	chr19	586942	586943	+	0	NA	Intergenic	L2b|LINE|L2	-2951	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr5.169931363.+	chr5	169931363	169931364	+	0	NA	"5' UTR (NM_001034837, exon 1 of 9)"	"5' UTR (NM_001034837, exon 1 of 9)"	315	NM_014592	30820	Hs.484111	NM_001034837	ENSG00000182132	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
chr1.220909457.+	chr1	220909457	220909458	+	0	NA	Intergenic	AluSc|SINE|Alu	-12219	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr10.67804005.+	chr10	67804005	67804006	+	0	NA	"intron (NM_013266, intron 15 of 17)"	AluSx|SINE|Alu	-881787	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
chr3.77689526.-	chr3	77689526	77689527	-	0	NA	"intron (NM_002942, intron 24 of 25)"	AluY|SINE|Alu	-542363	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr20.3148771.-	chr20	3148771	3148772	-	0	NA	"5' UTR (NM_014731, exon 1 of 3)"	"5' UTR (NM_014731, exon 1 of 3)"	-436	NM_014731	9762	Hs.90232	NM_014731	ENSG00000088899	LZTS3	PROSAPIP1|RP5-1187M17.10	"leucine zipper, putative tumor suppressor family member 3"	protein-coding
chr11.64819792.-	chr11	64819792	64819793	-	0	NA	"intron (NM_005468, intron 8 of 17)"	L2c|LINE|L2	-6217	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr13.103092036.-	chr13	103092036	103092037	-	0	NA	Intergenic	AluSx|SINE|Alu	37912	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr8.57184602.-	chr8	57184602	57184603	-	0	NA	Intergenic	SVA_D|Other|Other	-48639	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr16.84670303.+	chr16	84670303	84670304	+	0	NA	Intergenic	AluY|SINE|Alu	-11828	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr22.46303239.-	chr22	46303239	46303240	-	0	NA	Intergenic	Intergenic	-69769	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr5.18111625.+	chr5	18111625	18111626	+	0	NA	Intergenic	AluY|SINE|Alu	-724206	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr5.175665238.+	chr5	175665238	175665239	+	0	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	-132	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr5.3188296.-	chr5	3188296	3188297	-	0	NA	Intergenic	CpG	-347912	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr19.48417663.+	chr19	48417663	48417664	+	0	NA	Intergenic	AluSx1|SINE|Alu	1355	NR_024219	100170223	Hs.717052	NR_024219		SNAR-C5	-	small ILF3/NF90-associated RNA C5	snRNA
chr2.173941033.+	chr2	173941033	173941034	+	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	468	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr5.176075332.-	chr5	176075332	176075333	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-944	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr5.179795658.+	chr5	179795658	179795659	+	0	NA	Intergenic	AluY|SINE|Alu	-15343	NM_005110	9945	Hs.696497	NM_005110	ENSG00000131459	GFPT2	GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
chr10.22624566.-	chr10	22624566	22624567	-	0	NA	Intergenic	CpG	9808	NM_001253855	9576	Hs.655170	NM_001253854	ENSG00000077327	SPAG6	Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
chr21.45684281.+	chr21	45684281	45684282	+	0	NA	Intergenic	AluY|SINE|Alu	-2182	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr8.98907192.-	chr8	98907192	98907193	-	0	NA	"intron (NM_002380, intron 2 of 18)"	AluSx1|SINE|Alu	-25881	NM_002380	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
chr6.14166692.+	chr6	14166692	14166693	+	0	NA	Intergenic	AluY|SINE|Alu	48827	NM_004233	9308	Hs.595133	NM_001040280	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
chrX.112142801.-	chrX	112142801	112142802	-	0	NA	Intergenic	AluY|SINE|Alu	58758	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr9.16855808.-	chr9	16855808	16855809	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14978	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr16.1031793.-	chr16	1031793	1031794	-	0	NA	promoter-TSS (NR_033645)	promoter-TSS (NR_033645)	15	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
chr1.10727911.+	chr1	10727911	10727912	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128822	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr16.70085704.-	chr16	70085704	70085705	-	0	NA	"intron (NR_003610, intron 1 of 25)"	SVA_F|Other|Other	-14147	NR_003610	283970	Hs.513695	NR_003610	ENSG00000196696	PDXDC2P	PDXDC2	"pyridoxal-dependent decarboxylase domain containing 2, pseudogene"	pseudo
chr14.97183861.+	chr14	97183861	97183862	+	0	NA	Intergenic	AluY|SINE|Alu	-79823	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr3.164119739.-	chr3	164119739	164119740	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676544	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr1.109995559.+	chr1	109995559	109995560	+	0	NA	Intergenic	AluY|SINE|Alu	-13541	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr2.61619489.+	chr2	61619489	61619490	+	0	NA	"intron (NM_014709, intron 5 of 79)"	AluSx|SINE|Alu	25023	NR_003707	100124537	Hs.675825	NR_003707		SNORA70B	-	"small nucleolar RNA, H/ACA box 70B"	snoRNA
chr22.51001326.-	chr22	51001326	51001327	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-2	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr6.71104379.+	chr6	71104379	71104380	+	0	NA	Intergenic	MER48|LTR|ERV1	-18728	NM_020819	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr14.35800649.+	chr14	35800649	35800650	+	0	NA	Intergenic	AluSx|SINE|Alu	39075	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr5.22207145.+	chr5	22207145	22207146	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64684	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr16.85267962.-	chr16	85267962	85267963	-	0	NA	Intergenic	MIR|SINE|MIR	48602	NR_038859	197196	Hs.679002	NR_038859	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	miscRNA
chr1.70033255.-	chr1	70033255	70033256	-	0	NA	Intergenic	CpG	192603	NM_020794	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
chr16.85203570.-	chr16	85203570	85203571	-	0	NA	Intergenic	CpG	-32814	NR_033984	400548	Hs.592054	NR_033984		LOC400548	-	uncharacterized LOC400548	miscRNA
chr20.32042417.+	chr20	32042417	32042418	+	0	NA	Intergenic	AluY|SINE|Alu	-10719	NM_003098	6640	Hs.31121	NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	"syntrophin, alpha 1"	protein-coding
chr14.101892572.+	chr14	101892572	101892573	+	0	NA	Intergenic	AluY|SINE|Alu	129441	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr5.92346208.+	chr5	92346208	92346209	+	0	NA	Intergenic	AluSq2|SINE|Alu	560291	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr2.242840625.-	chr2	242840625	242840626	-	0	NA	Intergenic	AluSx1|SINE|Alu	-28739	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr2.97063531.-	chr2	97063531	97063532	-	0	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	-62047	NM_015341	23397	Hs.308045	NM_015341		NCAPH	BRRN1|CAP-H|HCAP-H	"non-SMC condensin I complex, subunit H"	protein-coding
chr17.57868964.+	chr17	57868964	57868965	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49663	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr13.77954561.-	chr13	77954561	77954562	-	0	NA	Intergenic	AluSc|SINE|Alu	53384	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr9.138065622.-	chr9	138065622	138065623	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7833	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr7.36403845.+	chr7	36403845	36403846	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	2937	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr3.47744688.+	chr3	47744688	47744689	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78717	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr16.67948375.-	chr16	67948375	67948376	-	0	NA	"intron (NM_006742, intron 2 of 2)"	AluSx|SINE|Alu	-17403	NM_001907	1506	Hs.654546	NM_001907		CTRL	CTRL1	chymotrypsin-like	protein-coding
chr3.52981412.-	chr3	52981412	52981413	-	0	NA	"intron (NM_016329, intron 3 of 20)"	AluY|SINE|Alu	49815	NM_198563	375346	Hs.744189	NM_198563	ENSG00000213533	TMEM110	-	transmembrane protein 110	protein-coding
chr20.62512916.-	chr20	62512916	62512917	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13539	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr2.97480066.-	chr2	97480066	97480067	-	0	NA	Intergenic	Intergenic	1925	NM_199078	26505	Hs.711617	NM_017623		CNNM3	ACDP3	cyclin M3	protein-coding
chr6.70692591.-	chr6	70692591	70692592	-	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	-116143	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr16.30810947.-	chr16	30810947	30810948	-	0	NA	Intergenic	AluSx|SINE|Alu	12424	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr11.72310129.-	chr11	72310129	72310130	-	0	NA	"intron (NM_002599, intron 4 of 30)"	"intron (NM_002599, intron 4 of 30)"	-16045	NR_029603	406931		NR_029603		MIR139	MIR139-3p|MIRN139	microRNA 139	miscRNA
chr16.88333479.-	chr16	88333479	88333480	-	0	NA	Intergenic	Intergenic	160400	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr7.150812756.+	chr7	150812756	150812757	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28930	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr2.133015891.-	chr2	133015891	133015892	-	0	NA	promoter-TSS (NR_027020)	promoter-TSS (NR_027020)	349	NR_027020	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B-like	pseudo
chr19.14156313.+	chr19	14156313	14156314	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13658	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr1.2887372.-	chr1	2887372	2887373	-	0	NA	Intergenic	Intergenic	50674	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr7.155834405.-	chr7	155834405	155834406	-	0	NA	Intergenic	Intergenic	229438	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr2.240371721.+	chr2	240371721	240371722	+	0	NA	Intergenic	SVA_D|Other|Other	-49078	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr20.31565662.+	chr20	31565662	31565663	+	0	NA	Intergenic	Intergenic	26577	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr5.179273903.+	chr5	179273903	179273904	+	0	NA	"intron (NM_016175, intron 3 of 6)"	L1MEd|LINE|L1	11937	NM_001017987	51149	Hs.741169	NM_001018061	ENSG00000161010	C5orf45	-	chromosome 5 open reading frame 45	protein-coding
chr6.12012477.+	chr6	12012477	12012478	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-247	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr6.64246122.+	chr6	64246122	64246123	+	0	NA	Intergenic	AluSq|SINE|Alu	-35798	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr12.66636772.-	chr12	66636772	66636773	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53794	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr2.99878873.-	chr2	99878873	99878874	-	0	NA	Intergenic	AluY|SINE|Alu	7303	NM_175735	254773	Hs.436468	NM_175735	ENSG00000185674	LYG2	LYGH	lysozyme G-like 2	protein-coding
chr17.4697378.+	chr17	4697378	4697379	+	0	NA	Intergenic	AluY|SINE|Alu	-2061	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr14.105242482.-	chr14	105242482	105242483	-	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	-17456	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr22.21405395.+	chr22	21405395	21405396	+	0	NA	"intron (NR_027006, intron 4 of 10)"	AluJr|SINE|Alu	5146	NR_027006	400891	Hs.291198	NM_001013675	ENSG00000187905	LOC400891	-	chromosome 14 open reading frame 166B pseudogene	pseudo
chr5.171601808.-	chr5	171601808	171601809	-	0	NA	"intron (NM_005990, intron 1 of 18)"	L2c|LINE|L2	-13538	NM_005990	6793	Hs.744005	NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
chr12.118079848.+	chr12	118079848	118079849	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280241	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr5.153103230.-	chr5	153103230	153103231	-	0	NA	"intron (NM_001258022, intron 11 of 15)"	L1PA3|LINE|L1	-231498	NM_001258022	2890	Hs.737709	NM_000827	ENSG00000155511	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	"glutamate receptor, ionotropic, AMPA 1"	protein-coding
chr8.86574410.+	chr8	86574410	86574411	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	332	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr22.49791861.-	chr22	49791861	49791862	-	0	NA	Intergenic	Intergenic	-259329	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr2.128965898.+	chr2	128965898	128965899	+	0	NA	Intergenic	SVA_F|Other|Other	110273	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr14.51521345.-	chr14	51521345	51521346	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41077	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr7.936489.+	chr7	936489	936490	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20298	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr2.113642144.-	chr2	113642144	113642145	-	0	NA	Intergenic	AluJb|SINE|Alu	28404	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr10.48428834.-	chr10	48428834	48428835	-	0	NA	"exon (NM_004962, exon 2 of 3)"	"exon (NM_004962, exon 2 of 3)"	-10304	NM_004962	2662	Hs.2171	NM_004962	ENSG00000107623	GDF10	BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
chr20.20772506.-	chr20	20772506	20772507	-	0	NA	Intergenic	LTR16A2|LTR|ERVL	79240	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr5.180017809.-	chr5	180017809	180017810	-	0	NA	"exon (NM_052863, exon 2 of 3)"	"exon (NM_052863, exon 2 of 3)"	-678	NM_052863	92304	Hs.62492	NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	"secretoglobin, family 3A, member 1"	protein-coding
chr15.63892627.-	chr15	63892627	63892628	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-399	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr13.50297699.+	chr13	50297699	50297700	+	0	NA	"intron (NM_002267, intron 7 of 16)"	AluSg7|SINE|Alu	-32076	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr3.93689452.-	chr3	93689452	93689453	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3482	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr8.86544475.+	chr8	86544475	86544476	+	0	NA	Intergenic	AluSp|SINE|Alu	23430	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr17.65335478.-	chr17	65335478	65335479	-	0	NA	Intergenic	AluSx|SINE|Alu	-27243	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr4.27215134.-	chr4	27215134	27215135	-	0	NA	Intergenic	AluY|SINE|Alu	-352821	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr2.237068243.+	chr2	237068243	237068244	+	0	NA	Intergenic	CpG	8409	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr1.52460248.+	chr1	52460248	52460249	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3812	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	"RAB3B, member RAS oncogene family"	protein-coding
chr15.63892634.+	chr15	63892634	63892635	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	392	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr21.35774240.+	chr21	35774240	35774241	+	0	NA	Intergenic	AluSc8|SINE|Alu	26491	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr9.36860045.-	chr9	36860045	36860046	-	0	NA	"intron (NM_016734, intron 8 of 9)"	"intron (NM_016734, intron 8 of 9)"	-4260	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr18.29434788.+	chr18	29434788	29434789	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88303	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr3.42642490.-	chr3	42642490	42642491	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-82	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr11.120206733.-	chr11	120206733	120206734	-	0	NA	promoter-TSS (NM_015313)	promoter-TSS (NM_015313)	885	NM_015313	23365	Hs.24598	NM_001198665	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding
chr9.90860504.-	chr9	90860504	90860505	-	0	NA	Intergenic	SVA_D|Other|Other	110604	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	"SPATA31 subfamily C, member 2"	protein-coding
chr13.24932128.-	chr13	24932128	24932129	-	0	NA	Intergenic	Intergenic	-48412	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr9.141038873.-	chr9	141038873	141038874	-	0	NA	Intergenic	Intergenic	5692	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr7.5275416.+	chr7	5275416	5275417	+	0	NA	Intergenic	AluSg|SINE|Alu	21516	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr7.95234904.+	chr7	95234904	95234905	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8979	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr10.93393076.+	chr10	93393076	93393077	+	0	NA	promoter-TSS (NM_005398)	promoter-TSS (NM_005398)	-218	NM_005398	5507	Hs.700228	NM_005398	ENSG00000119938	PPP1R3C	PPP1R5	"protein phosphatase 1, regulatory subunit 3C"	protein-coding
chr7.25609209.-	chr7	25609209	25609210	-	0	NA	Intergenic	AluSz|SINE|Alu	-271421	NR_046486	100873753		NR_046486		RNU6-16	-	"RNA, U6 small nuclear 16"	snRNA
chr1.113275279.-	chr1	113275279	113275280	-	0	NA	Intergenic	AluY|SINE|Alu	-12090	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chrX.47336634.-	chrX	47336634	47336635	-	0	NA	"intron (NM_153380, intron 1 of 4)"	AluSx1|SINE|Alu	-5711	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr1.3346546.+	chr1	3346546	3346547	+	0	NA	"intron (NM_199454, intron 14 of 16)"	"intron (NM_199454, intron 14 of 16)"	-24601	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr3.125174754.-	chr3	125174754	125174755	-	0	NA	"intron (NR_073435, intron 10 of 12)"	AluY|SINE|Alu	-64304	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr17.46187001.-	chr17	46187001	46187002	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2054	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr2.3190719.-	chr2	3190719	3190720	-	0	NA	Intergenic	Intergenic	-190934	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr6.33811433.+	chr6	33811433	33811434	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39640	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr12.34494573.+	chr12	34494573	34494574	+	0	NA	Intergenic	CpG	319357	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.13497499.-	chr19	13497499	13497500	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119775	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr15.30643918.+	chr15	30643918	30643919	+	0	NA	Intergenic	AluSx1|SINE|Alu	41946	NM_148911	89832	Hs.510853	NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10	"CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion"	protein-coding
chr20.62657611.+	chr20	62657611	62657612	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8086	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr1.59041966.-	chr1	59041966	59041967	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1200	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chrX.19862946.-	chrX	19862946	19862947	-	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	-42798	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr5.175665284.+	chr5	175665284	175665285	+	0	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	-86	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr12.133808166.-	chr12	133808166	133808167	-	0	NA	"exon (NM_001191054, exon 3 of 9)"	"exon (NM_001191054, exon 3 of 9)"	-4256	NM_001191054	647589	Hs.703008	NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
chr21.33279855.+	chr21	33279855	33279856	+	0	NA	"intron (NM_014586, intron 1 of 10)"	"intron (NM_014586, intron 1 of 10)"	34227	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr22.22259616.+	chr22	22259616	22259617	+	0	NA	Intergenic	AluSq2|SINE|Alu	-37646	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr12.97510585.+	chr12	97510585	97510586	+	0	NA	Intergenic	AluY|SINE|Alu	209341	NM_001135175	121441	Hs.270084	NM_001135175	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	"neural precursor cell expressed, developmentally down-regulated 1"	protein-coding
chr14.34924176.-	chr14	34924176	34924177	-	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	-7292	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr6.33806263.+	chr6	33806263	33806264	+	0	NA	Intergenic	Intergenic	-34470	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr1.3230346.-	chr1	3230346	3230347	-	0	NA	"intron (NM_199454, intron 3 of 16)"	"intron (NM_199454, intron 3 of 16)"	140801	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr2.237067794.-	chr2	237067794	237067795	-	0	NA	Intergenic	Intergenic	-8858	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr5.32689646.-	chr5	32689646	32689647	-	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	21097	NM_001204376	4883	Hs.619466	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	protein-coding
chr11.68025689.+	chr11	68025689	68025690	+	0	NA	Intergenic	L2b|LINE|L2	13780	NM_022338	53838	Hs.303025	NM_022338	ENSG00000171067	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
chr1.32679394.+	chr1	32679394	32679395	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4699	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr11.555433.+	chr11	555433	555434	+	0	NA	TTS (NM_198075)	TTS (NM_198075)	5346	NM_173573	256329	Hs.669395	NM_173573	ENSG00000185522	C11orf35	-	chromosome 11 open reading frame 35	protein-coding
chr10.99608729.+	chr10	99608729	99608730	+	0	NA	Intergenic	AluJo|SINE|Alu	-1266	NM_001010917	401647	Hs.567524	NM_001010917		GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	"golgin A7 family, member B"	protein-coding
chr12.121346467.-	chr12	121346467	121346468	-	0	NA	Intergenic	AluSp|SINE|Alu	4312	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chrX.90204184.+	chrX	90204184	90204185	+	0	NA	Intergenic	AluY|SINE|Alu	-485413	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr10.125273663.+	chr10	125273663	125273664	+	0	NA	Intergenic	Intergenic	-152208	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr17.2323433.+	chr17	2323433	2323434	+	0	NA	"exon (NM_024086, exon 10 of 10)"	"exon (NM_024086, exon 10 of 10)"	-4703	NR_028335	284009	Hs.632244	NR_028335		LOC284009	-	uncharacterized LOC284009	miscRNA
chr3.49201004.+	chr3	49201004	49201005	+	0	NA	"exon (NM_022903, exon 2 of 2)"	"exon (NM_022903, exon 2 of 2)"	2781	NM_022903	64925	Hs.211472	NM_022903	ENSG00000177352	CCDC71	-	coiled-coil domain containing 71	protein-coding
chr6.34857466.-	chr6	34857466	34857467	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-428	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr17.16010348.-	chr17	16010348	16010349	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87605	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr3.164119675.+	chr3	164119675	164119676	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676608	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr17.34053861.+	chr17	34053861	34053862	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4818	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr8.69417942.+	chr8	69417942	69417943	+	0	NA	"intron (NM_001195639, intron 5 of 6)"	AluYb8|SINE|Alu	-174216	NR_038877	286189	Hs.593427	NR_038877	ENSG00000248801	LOC286189	-	uncharacterized LOC286189	miscRNA
chr7.77648655.+	chr7	77648655	77648656	+	0	NA	"exon (NM_012301, exon 22 of 22)"	"exon (NM_012301, exon 22 of 22)"	179208	NM_020432	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr10.69822240.+	chr10	69822240	69822241	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12863	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr17.8060999.+	chr17	8060999	8061000	+	0	NA	Intergenic	AluY|SINE|Alu	-5246	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr17.48422583.+	chr17	48422583	48422584	+	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	-810	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr1.151742036.-	chr1	151742036	151742037	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2905	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr1.145075922.-	chr1	145075922	145075923	-	0	NA	"5' UTR (NM_022359, exon 1 of 7)"	"5' UTR (NM_022359, exon 1 of 7)"	-264	NM_022359	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chrX.79552104.-	chrX	79552104	79552105	-	0	NA	Intergenic	AluSp|SINE|Alu	38899	NM_001170574	169966	Hs.367959	NM_001170574	ENSG00000174016	FAM46D	CT1.26|CT112	"family with sequence similarity 46, member D"	protein-coding
chr5.175665285.-	chr5	175665285	175665286	-	0	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	85	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr17.78977919.+	chr17	78977919	78977920	+	0	NA	Intergenic	CpG	12278	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr15.90328015.-	chr15	90328015	90328016	-	0	NA	TTS (NM_001150)	TTS (NM_001150)	-8426	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr5.121413277.+	chr5	121413277	121413278	+	0	NA	promoter-TSS (NM_001178102)	promoter-TSS (NM_001178102)	-359	NM_001178102	4015	Hs.102267	NM_001178102	ENSG00000113083	LOX	-	lysyl oxidase	protein-coding
chr16.27960130.+	chr16	27960130	27960131	+	0	NA	"intron (NM_001109763, intron 2 of 6)"	AluY|SINE|Alu	-60652	NM_144675	146395	Hs.91910	NM_001109763	ENSG00000169181	GSG1L	PRO19651	GSG1-like	protein-coding
chr5.138488130.-	chr5	138488130	138488131	-	0	NA	"intron (NM_022464, intron 1 of 9)"	AluSx1|SINE|Alu	-45935	NM_022464	64374	Hs.483521	NM_001037633	ENSG00000120725	SIL1	BAP|MSS|ULG5	"SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)"	protein-coding
chr6.138984631.-	chr6	138984631	138984632	-	0	NA	Intergenic	AluSp|SINE|Alu	28174	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chrM.15041.-	chrM	15041	15042	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.1217128.-	chr1	1217128	1217129	-	0	NA	"intron (NR_037668, intron 3 of 16)"	"intron (NR_037668, intron 3 of 16)"	-1312	NM_001130413	6339	Hs.512681	NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	"sodium channel, non-voltage-gated 1, delta subunit"	protein-coding
chr1.217394793.-	chr1	217394793	217394794	-	0	NA	Intergenic	AluSq2|SINE|Alu	83696	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr8.11421254.+	chr8	11421254	11421255	+	0	NA	"intron (NM_001715, intron 12 of 12)"	"intron (NM_001715, intron 12 of 12)"	-12790	NR_040035	83655	Hs.742430	NR_040035	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	miscRNA
chr14.77965499.+	chr14	77965499	77965500	+	0	NA	promoter-TSS (NM_199296)	promoter-TSS (NM_199296)	-289	NM_182509	145501	Hs.29742	NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2 homolog (zebrafish)	protein-coding
chr7.124427232.-	chr7	124427232	124427233	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3632	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr16.58288608.+	chr16	58288608	58288609	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4768	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr17.1226125.-	chr17	1226125	1226126	-	0	NA	Intergenic	AluSx|SINE|Alu	-43168	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr2.240980387.+	chr2	240980387	240980388	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2012	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr7.100642195.-	chr7	100642195	100642196	-	0	NA	"exon (NM_001164462, exon 2 of 12)"	"exon (NM_001164462, exon 2 of 12)"	21169	NM_001040105	140453	Hs.271819	NM_001040105	ENSG00000169876	MUC17	MUC3	"mucin 17, cell surface associated"	protein-coding
chr12.77339569.-	chr12	77339569	77339570	-	0	NA	Intergenic	AluY|SINE|Alu	66770	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr12.75694198.-	chr12	75694198	75694199	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29638	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr11.370302.+	chr11	370302	370303	+	0	NA	"intron (NM_178537, intron 1 of 19)"	"intron (NM_178537, intron 1 of 19)"	507	NM_178537	338707	Hs.148074	NM_178537	ENSG00000182272	B4GALNT4	-	"beta-1,4-N-acetyl-galactosaminyl transferase 4"	protein-coding
chr9.105850385.+	chr9	105850385	105850386	+	0	NA	Intergenic	AluYc|SINE|Alu	92792	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr5.176238076.-	chr5	176238076	176238077	-	0	NA	"intron (NM_133369, intron 1 of 14)"	CpG	-516	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 homolog A (C. elegans)	protein-coding
chr14.97183964.-	chr14	97183964	97183965	-	0	NA	Intergenic	AluY|SINE|Alu	79720	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr2.27588359.-	chr2	27588359	27588360	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4560	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr1.3421743.-	chr1	3421743	3421744	-	0	NA	"intron (NM_001409, intron 17 of 36)"	"intron (NM_001409, intron 17 of 36)"	-50596	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr5.178491473.-	chr5	178491473	178491474	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3866	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr18.10796178.+	chr18	10796178	10796179	+	0	NA	"intron (NM_022068, intron 12 of 51)"	AluY|SINE|Alu	270305	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr19.13497334.+	chr19	13497334	13497335	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119940	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr7.75796785.+	chr7	75796785	75796786	+	0	NA	Intergenic	AluSg7|SINE|Alu	-34431	NM_001110199	222183	Hs.511025	NM_001110199	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
chr14.23706408.+	chr14	23706408	23706409	+	0	NA	Intergenic	AluSz|SINE|Alu	48901	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr15.43230902.+	chr15	43230902	43230903	+	0	NA	Intergenic	AluY|SINE|Alu	-17895	NM_173500	146057	Hs.727864	NM_173500		TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
chr13.21872280.-	chr13	21872280	21872281	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-16	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr14.102101600.+	chr14	102101600	102101601	+	0	NA	Intergenic	Intergenic	73912	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr7.2716300.-	chr7	2716300	2716301	-	0	NA	Intergenic	Intergenic	2863	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr5.17207850.+	chr5	17207850	17207851	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9082	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr4.153601079.-	chr4	153601079	153601080	-	0	NA	"exon (NM_152680, exon 1 of 7)"	"exon (NM_152680, exon 1 of 7)"	-238	NM_152680	201799	Hs.518900	NM_152680		TMEM154	-	transmembrane protein 154	protein-coding
chr3.31574356.-	chr3	31574356	31574357	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	135	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr13.46489311.-	chr13	46489311	46489312	-	0	NA	Intergenic	MER52D|LTR|ERV1	63465	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr12.97874026.-	chr12	97874026	97874027	-	0	NA	"intron (NR_024037, intron 2 of 8)"	AluY|SINE|Alu	11661	NR_031653	100302289		NR_031653	ENSG00000221479	MIR1251	MIRN1251|hsa-mir-1251	microRNA 1251	miscRNA
chr1.65532962.+	chr1	65532962	65532963	+	0	NA	Intergenic	CpG	-8771	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr2.107083343.-	chr2	107083343	107083344	-	0	NA	"intron (NM_001144013, intron 1 of 22)"	CpG	-1458	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
chr16.34787492.+	chr16	34787492	34787493	+	0	NA	Intergenic	CpG	-46652	NR_034018	100130700	Hs.97712	NR_034018	ENSG00000260857	LOC100130700	-	uncharacterized LOC100130700	miscRNA
chr22.51010946.-	chr22	51010946	51010947	-	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	-5560	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr17.17910887.+	chr17	17910887	17910888	+	0	NA	"3' UTR (NM_001130092, exon 13 of 13)"	"3' UTR (NM_001130092, exon 13 of 13)"	31593	NM_145691	91647	Hs.528889	NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
chr5.145549268.+	chr5	145549268	145549269	+	0	NA	"intron (NM_020117, intron 4 of 31)"	AluSq2|SINE|Alu	13026	NM_020117	51520	Hs.432674	NM_020117	ENSG00000133706	LARS	HSPC192|LARS1|LEURS|LEUS|LRS|PIG44|RNTLS|hr025Cl	leucyl-tRNA synthetase	protein-coding
chr2.228337296.+	chr2	228337296	228337297	+	0	NA	TTS (NR_049888)	TTS (NR_049888)	408	NM_001135189	3267	Hs.352962	NM_001135187		AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
chr15.92290013.+	chr15	92290013	92290014	+	0	NA	Intergenic	AluY|SINE|Alu	-106925	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr3.1144514.+	chr3	1144514	1144515	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9885	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr17.37768992.-	chr17	37768992	37768993	-	0	NA	Intergenic	Intergenic	4817	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr6.167607720.-	chr6	167607720	167607721	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23639	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr18.43037859.+	chr18	43037859	43037860	+	0	NA	"intron (NM_001242692, intron 1 of 20)"	"intron (NM_001242692, intron 1 of 20)"	-156907	NM_007163	8170	Hs.710927	NM_001242692	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	"solute carrier family 14 (urea transporter), member 2"	protein-coding
chr5.2391217.-	chr5	2391217	2391218	-	0	NA	Intergenic	Intergenic	-360552	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr18.77244846.-	chr18	77244846	77244847	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84520	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr17.46186984.-	chr17	46186984	46186985	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2037	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr6.22057481.+	chr6	22057481	22057482	+	0	NA	"intron (NR_015410, intron 8 of 11)"	AluYc|SINE|Alu	89941	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	LOC729177	-	uncharacterized LOC729177	miscRNA
chr9.28773110.+	chr9	28773110	28773111	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53807	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr11.12030904.+	chr11	12030904	12030905	+	0	NA	promoter-TSS (NM_013253)	promoter-TSS (NM_013253)	13	NM_013253	27122	Hs.731954	NM_001018057	ENSG00000050165	DKK3	REIC|RIG	dickkopf 3 homolog (Xenopus laevis)	protein-coding
chr12.26964554.+	chr12	26964554	26964555	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21577	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr16.70133258.+	chr16	70133258	70133259	+	0	NA	Intergenic	AluY|SINE|Alu	-14271	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr14.103405469.-	chr14	103405469	103405470	-	0	NA	"intron (NM_006035, intron 34 of 36)"	AluY|SINE|Alu	-16476	NM_030943	81693	Hs.534494	NM_030943	ENSG00000166126	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
chr12.33024392.-	chr12	33024392	33024393	-	0	NA	"intron (NM_001005242, intron 3 of 12)"	AluJb|SINE|Alu	-25388	NM_004572	5318	Hs.164384	NM_001005242	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
chr2.70057311.+	chr2	70057311	70057312	+	0	NA	"intron (NM_178439, intron 1 of 13)"	CpG	493	NM_178439	64395	Hs.293971	NM_178439		GMCL1	BTBD13|GCL|GCL1|SPATA29	"germ cell-less, spermatogenesis associated 1"	protein-coding
chr8.22308539.-	chr8	22308539	22308540	-	0	NA	"intron (NM_001243975, intron 1 of 12)"	AluY|SINE|Alu	-10056	NM_001243974	5533	Hs.731683	NM_001243974	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	"protein phosphatase 3, catalytic subunit, gamma isozyme"	protein-coding
chr22.46326798.+	chr22	46326798	46326799	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46210	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr12.96314645.-	chr12	96314645	96314646	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21783	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr10.7542193.-	chr10	7542193	7542194	-	0	NA	Intergenic	AluSc8|SINE|Alu	88745	NM_001029880	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
chr19.1663617.-	chr19	1663617	1663618	-	0	NA	Intergenic	AluSp|SINE|Alu	11289	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr7.821259.+	chr7	821259	821260	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33935	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr15.29426622.+	chr15	29426622	29426623	+	0	NA	"intron (NM_015307, intron 7 of 10)"	"intron (NM_015307, intron 7 of 10)"	135398	NM_138704	56160	Hs.94011	NM_138704	ENSG00000185115	NDNL2	HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3	necdin-like 2	protein-coding
chr2.148597924.+	chr2	148597924	148597925	+	0	NA	Intergenic	AluJb|SINE|Alu	-4646	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	"activin A receptor, type IIA"	protein-coding
chr7.2943504.+	chr7	2943504	2943505	+	0	NA	Intergenic	Intergenic	-59545	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr5.78513860.+	chr5	78513860	78513861	+	0	NA	Intergenic	AluSx|SINE|Alu	-18065	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHDC1L3	"junction mediating and regulatory protein, p53 cofactor"	protein-coding
chr4.26862495.-	chr4	26862495	26862496	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-182	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr2.9551671.+	chr2	9551671	9551672	+	0	NA	"intron (NM_022334, intron 4 of 5)"	AluSx3|SINE|Alu	11972	NM_004763	9270	Hs.467662	NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
chr9.129229387.-	chr9	129229387	129229388	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56604	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chrM.16503.+	chrM	16503	16504	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.8388542.+	chr6	8388542	8388543	+	0	NA	Intergenic	LTR9|LTR|ERV1	47252	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr6.34205020.-	chr6	34205020	34205021	-	0	NA	"5' UTR (NM_145902, exon 1 of 5)"	"5' UTR (NM_145902, exon 1 of 5)"	-370	NM_145902	3159	Hs.703764	NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
chr6.88090579.+	chr6	88090579	88090580	+	0	NA	Intergenic	AluJb|SINE|Alu	-16263	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr1.150897073.+	chr1	150897073	150897074	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1742	NM_012432	9869	Hs.643565	NM_001145415	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	"SET domain, bifurcated 1"	protein-coding
chrX.12751722.+	chrX	12751722	12751723	+	0	NA	Intergenic	AluY|SINE|Alu	-57752	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr7.132214495.+	chr7	132214495	132214496	+	0	NA	"intron (NM_181775, intron 2 of 4)"	AluY|SINE|Alu	46828	NM_020911	91584	Hs.511454	NM_001105543	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
chr3.88595865.+	chr3	88595865	88595866	+	0	NA	Intergenic	AluSc8|SINE|Alu	-396849	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr5.18111603.-	chr5	18111603	18111604	-	0	NA	Intergenic	AluY|SINE|Alu	724184	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr17.40601028.+	chr17	40601028	40601029	+	0	NA	Intergenic	SVA_D|Other|Other	-9834	NM_001130021	535	Hs.463074	NM_001130020	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	"ATPase, H+ transporting, lysosomal V0 subunit a1"	protein-coding
chr7.13141788.-	chr7	13141788	13141789	-	0	NA	Intergenic	SVA_D|Other|Other	-414877	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr5.1770124.+	chr5	1770124	1770125	+	0	NA	Intergenic	L1MB5|LINE|L1	29832	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr3.128194215.-	chr3	128194215	128194216	-	0	NA	Intergenic	Intergenic	8124	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr8.111697005.-	chr8	111697005	111697006	-	0	NA	Intergenic	AluY|SINE|Alu	710046	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr17.7011287.-	chr17	7011287	7011288	-	0	NA	"intron (NM_001201352, intron 4 of 8)"	"intron (NM_001201352, intron 4 of 8)"	-6342	NM_080914	433	Hs.654440	NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
chr20.19431524.+	chr20	19431524	19431525	+	0	NA	"intron (NM_020689, intron 2 of 16)"	AluSz|SINE|Alu	-166284	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	miscRNA
chrX.23126503.+	chrX	23126503	23126504	+	0	NA	"intron (NR_073010, intron 2 of 5)"	AluY|SINE|Alu	108425	NM_182699	168400	Hs.434416	NM_182699	ENSG00000184735	DDX53	CAGE|CT26	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	protein-coding
chr13.50138746.-	chr13	50138746	50138747	-	0	NA	"intron (NM_018191, intron 4 of 12)"	NA	-20973	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr1.59938109.+	chr1	59938109	59938110	+	0	NA	"intron (NM_018291, intron 6 of 15)"	LTR12C|LTR|ERV1	162359	NM_001244714	55277	Hs.444301	NM_001113411	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
chr6.108315272.+	chr6	108315272	108315273	+	0	NA	Intergenic	AluSz|SINE|Alu	-35790	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr16.53232368.-	chr16	53232368	53232369	-	0	NA	"intron (NM_025134, intron 2 of 38)"	AluSc8|SINE|Alu	-143423	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr14.76577552.+	chr14	76577552	76577553	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40707	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr5.179167558.-	chr5	179167558	179167559	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7707	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr2.235156432.+	chr2	235156432	235156433	+	0	NA	Intergenic	LTR12C|LTR|ERV1	197086	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	"secreted phosphoprotein 2, 24kDa"	protein-coding
chr4.84864615.+	chr4	84864615	84864616	+	0	NA	Intergenic	SVA_D|Other|Other	407145	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr16.1332205.-	chr16	1332205	1332206	-	0	NA	Intergenic	AluSx|SINE|Alu	-25932	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr11.438992.-	chr11	438992	438993	-	0	NA	"intron (NM_001012302, intron 1 of 22)"	"intron (NM_001012302, intron 1 of 22)"	-3019	NM_001012302	338440	Hs.501622	NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
chrX.51075601.+	chrX	51075601	51075602	+	0	NA	"intron (NM_153183, intron 1 of 2)"	CpG	518	NM_153183	170685	Hs.375178	NM_153183	ENSG00000122824	NUDT10	APS2|DIPP3a|hDIPP3alpha	nudix (nucleoside diphosphate linked moiety X)-type motif 10	protein-coding
chr19.54151510.-	chr19	54151510	54151511	-	0	NA	Intergenic	CpG	-16200	NM_001012728	503834	Hs.579941	NM_001012728	ENSG00000204595	DPRX	-	divergent-paired related homeobox	protein-coding
chr19.58250036.+	chr19	58250036	58250037	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8128	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr12.32064876.-	chr12	32064876	32064877	-	0	NA	Intergenic	AluY|SINE|Alu	47477	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr6.13335706.-	chr6	13335706	13335707	-	0	NA	Intergenic	AluYa5|SINE|Alu	6919	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr1.211688771.-	chr1	211688771	211688772	-	0	NA	Intergenic	CpG	22512	NM_183059	343035	Hs.632495	NM_001164688	ENSG00000198570	RD3	C1orf36|LCA12	retinal degeneration 3	protein-coding
chr4.38809146.+	chr4	38809146	38809147	+	0	NA	Intergenic	SVA_D|Other|Other	-2734	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr19.23432241.-	chr19	23432241	23432242	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-931	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr8.57184596.-	chr8	57184596	57184597	-	0	NA	Intergenic	SVA_D|Other|Other	-48645	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chrX.29933159.+	chrX	29933159	29933160	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300516	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr19.9311331.+	chr19	9311331	9311332	+	0	NA	Intergenic	AluSc8|SINE|Alu	14216	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr5.76925756.+	chr5	76925756	76925757	+	0	NA	"3' UTR (NM_032109, exon 3 of 3)"	"3' UTR (NM_032109, exon 3 of 3)"	8766	NM_032109	23440	Hs.202247	NM_032109		OTP	-	orthopedia homeobox	protein-coding
chr3.126795136.+	chr3	126795136	126795137	+	0	NA	Intergenic	LTR12C|LTR|ERV1	87699	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
chr3.9459302.-	chr3	9459302	9459303	-	0	NA	"intron (NM_001080517, intron 1 of 22)"	AluY|SINE|Alu	-19899	NM_001080517	55209	Hs.288164	NM_001080517	ENSG00000168137	SETD5	-	SET domain containing 5	protein-coding
chr16.31932532.+	chr16	31932532	31932533	+	0	NA	Intergenic	AluY|SINE|Alu	47453	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr9.138391802.-	chr9	138391802	138391803	-	0	NA	promoter-TSS (NM_001048265)	promoter-TSS (NM_001048265)	41	NM_144654	138162	Hs.414028	NM_001048265	ENSG00000160345	C9orf116	PIERCE1|RbEST47	chromosome 9 open reading frame 116	protein-coding
chr20.5213480.-	chr20	5213480	5213481	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81535	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chrX.136083583.-	chrX	136083583	136083584	-	0	NA	Intergenic	SVA_D|Other|Other	-30250	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
chr2.4156372.+	chr2	4156372	4156373	+	0	NA	Intergenic	CpG	-134750	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr20.39978507.-	chr20	39978507	39978508	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8947	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr19.17585842.+	chr19	17585842	17585843	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4542	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr8.14882339.-	chr8	14882339	14882340	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171320	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr20.31414385.-	chr20	31414385	31414386	-	0	NA	"intron (NM_012325, intron 2 of 6)"	AluSz|SINE|Alu	-6686	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	"microtubule-associated protein, RP/EB family, member 1"	protein-coding
chr7.158218549.-	chr7	158218549	158218550	-	0	NA	"intron (NM_130842, intron 1 of 21)"	CpG	-106956	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr17.81057098.+	chr17	81057098	81057099	+	0	NA	Intergenic	Intergenic	19531	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr11.2213960.+	chr11	2213960	2213961	+	0	NA	Intergenic	Intergenic	19667	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr16.75551671.-	chr16	75551671	75551672	-	0	NA	Intergenic	AluSz|SINE|Alu	-17397	NM_024533	23563	Hs.710689	NM_024533	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5	protein-coding
chr8.28449376.-	chr8	28449376	28449377	-	0	NA	Intergenic	AluSg4|SINE|Alu	86677	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	miscRNA
chr4.1358082.-	chr4	1358082	1358083	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16978	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr7.71801520.+	chr7	71801520	71801521	+	0	NA	"intron (NM_031468, intron 2 of 6)"	CpG	688	NM_001017440	83698	Hs.592750	NM_001017440	ENSG00000183166	CALN1	CABP8	calneuron 1	protein-coding
chr20.31211648.+	chr20	31211648	31211649	+	0	NA	Intergenic	Intergenic	28135	NM_182584	284805	Hs.353262	NR_026959		C20orf203	-	chromosome 20 open reading frame 203	protein-coding
chr11.16894189.-	chr11	16894189	16894190	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-134041	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr2.27526311.+	chr2	27526311	27526312	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4819	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr14.102954937.-	chr14	102954937	102954938	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21191	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr2.233668491.-	chr2	233668491	233668492	-	0	NA	"intron (NM_001103147, intron 16 of 30)"	AluYb8|SINE|Alu	27216	NM_001172416	3769	Hs.467338	NM_001172416	ENSG00000115474	KCNJ13	KIR1.4|KIR7.1|LCA16|SVD	"potassium inwardly-rectifying channel, subfamily J, member 13"	protein-coding
chr12.112051632.+	chr12	112051632	112051633	+	0	NA	Intergenic	AluY|SINE|Alu	-14152	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chrM.11221.-	chrM	11221	11222	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.63963683.+	chr6	63963683	63963684	+	0	NA	Intergenic	AluY|SINE|Alu	66199	NM_016571	51557	Hs.149585	NM_001143940	ENSG00000146166	LGSN	GLULD1|LGS	"lengsin, lens protein with glutamine synthetase domain"	protein-coding
chr7.158937215.-	chr7	158937215	158937216	-	0	NA	"intron (NM_003382, intron 1 of 12)"	CpG	-434	NM_003382	7434	Hs.585052	NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
chr13.77954521.+	chr13	77954521	77954522	+	0	NA	Intergenic	AluSc|SINE|Alu	-53344	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr2.30248615.-	chr2	30248615	30248616	-	0	NA	Intergenic	AluY|SINE|Alu	104138	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr9.116102497.+	chr9	116102497	116102498	+	0	NA	"5' UTR (NM_001012361, exon 1 of 11)"	"5' UTR (NM_001012361, exon 1 of 11)"	123	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr1.235267772.-	chr1	235267772	235267773	-	0	NA	Intergenic	CpG	-23480	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	"small nucleolar RNA, H/ACA box 14B"	snoRNA
chr2.128975992.+	chr2	128975992	128975993	+	0	NA	Intergenic	AluSg|SINE|Alu	100179	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr2.109985528.-	chr2	109985528	109985529	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55447	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr9.74464984.-	chr9	74464984	74464985	-	0	NA	Intergenic	AluY|SINE|Alu	-61164	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr19.11049786.-	chr19	11049786	11049787	-	0	NA	Intergenic	AluY|SINE|Alu	-10362	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr6.168219491.-	chr6	168219491	168219492	-	0	NA	Intergenic	AluSp|SINE|Alu	-7985	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr15.85321130.+	chr15	85321130	85321131	+	0	NA	"intron (NM_014630, intron 2 of 10)"	AluY|SINE|Alu	29312	NM_014630	9640	Hs.79347	NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
chr19.1396399.+	chr19	1396399	1396400	+	0	NA	TTS (NM_024407)	TTS (NM_024407)	5170	NM_000156	2593	Hs.81131	NM_000156	ENSG00000130005	GAMT	PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
chr2.173941048.-	chr2	173941048	173941049	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-483	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr3.99923796.-	chr3	99923796	99923797	-	0	NA	Intergenic	AluSq|SINE|Alu	-19128	NR_028358	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30C	CDC50C	transmembrane protein 30C	pseudo
chr6.149638278.+	chr6	149638278	149638279	+	0	NA	Intergenic	CpG	-1158	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr4.5892154.-	chr4	5892154	5892155	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1839	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr10.324346.-	chr10	324346	324347	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98412	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr14.106358712.+	chr14	106358712	106358713	+	0	NA	Intergenic	Intergenic	-25126	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr2.75236682.+	chr2	75236682	75236683	+	0	NA	Intergenic	AluSc8|SINE|Alu	50907	NM_019896	56655	Hs.469060	NM_019896		POLE4	YHHQ1|p12	"polymerase (DNA-directed), epsilon 4, accessory subunit"	protein-coding
chr12.105389616.+	chr12	105389616	105389617	+	0	NA	Intergenic	AluY|SINE|Alu	9518	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr4.47673803.+	chr4	47673803	47673804	+	0	NA	"intron (NM_006587, intron 10 of 21)"	AluY|SINE|Alu	166256	NM_006587	10699	Hs.518618	NM_006587	ENSG00000145244	CORIN	ATC2|CRN|Lrp4|PEE5|TMPRSS10	"corin, serine peptidase"	protein-coding
chr15.37172798.-	chr15	37172798	37172799	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5936	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr2.90481137.+	chr2	90481137	90481138	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1366838	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr14.90540080.+	chr14	90540080	90540081	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSx|SINE|Alu	11972	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr12.67941928.-	chr12	67941928	67941929	-	0	NA	Intergenic	AluY|SINE|Alu	100584	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr4.655957.-	chr4	655957	655958	-	0	NA	"exon (NM_001145291, exon 13 of 22)"	"exon (NM_001145291, exon 13 of 22)"	-8991	NM_001145292	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr13.105222488.+	chr13	105222488	105222489	+	0	NA	Intergenic	AluY|SINE|Alu	-895728	NM_001161814	267012	Hs.381382	NM_001161812	ENSG00000182346	DAOA	G72|LG72|SG72	D-amino acid oxidase activator	protein-coding
chr19.51192726.-	chr19	51192726	51192727	-	0	NA	"intron (NM_016148, intron 14 of 22)"	"intron (NM_016148, intron 14 of 22)"	-27469	NM_016148	50944	Hs.274255	NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
chr11.117186663.-	chr11	117186663	117186664	-	0	NA	"5' UTR (NM_012104, exon 1 of 9)"	"5' UTR (NM_012104, exon 1 of 9)"	-309	NM_012104	23621	Hs.504003	NM_001207048	ENSG00000186318	BACE1	ASP2|BACE|HSPC104	beta-site APP-cleaving enzyme 1	protein-coding
chr1.2887371.-	chr1	2887371	2887372	-	0	NA	Intergenic	Intergenic	50675	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr14.102904491.+	chr14	102904491	102904492	+	0	NA	"exon (NM_014844, exon 10 of 20)"	"exon (NM_014844, exon 10 of 20)"	71637	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr20.33062677.-	chr20	33062677	33062678	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8547	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr19.45660317.+	chr19	45660317	45660318	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3091	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr6.127845931.+	chr6	127845931	127845932	+	0	NA	Intergenic	AluY|SINE|Alu	-5431	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr9.38705449.-	chr9	38705449	38705450	-	0	NA	Intergenic	AluY|SINE|Alu	-84364	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr9.137722603.-	chr9	137722603	137722604	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18612	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr22.32868749.+	chr22	32868749	32868750	+	0	NA	Intergenic	AluY|SINE|Alu	-1958	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr10.76198272.+	chr10	76198272	76198273	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262025	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr22.45560440.-	chr22	45560440	45560441	-	0	NA	promoter-TSS (NM_153645)	promoter-TSS (NM_153645)	112	NM_153645	10762	Hs.475103	NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50kDa	protein-coding
chr16.89034094.+	chr16	89034094	89034095	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9410	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr19.15466569.-	chr19	15466569	15466570	-	0	NA	"intron (NM_005858, intron 13 of 13)"	AluSp|SINE|Alu	-24043	NM_005858	10270	Hs.743430	NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A kinase (PRKA) anchor protein 8	protein-coding
chr5.22207147.-	chr5	22207147	22207148	-	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	-64686	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr5.56356499.+	chr5	56356499	56356500	+	0	NA	Intergenic	AluSz|SINE|Alu	-108545	NM_152622	166968	Hs.657594	NM_152622	ENSG00000155545	MIER3	-	"mesoderm induction early response 1, family member 3"	protein-coding
chr1.2163779.+	chr1	2163779	2163780	+	0	NA	"intron (NM_003036, intron 1 of 6)"	"intron (NM_003036, intron 1 of 6)"	3645	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr14.23706415.+	chr14	23706415	23706416	+	0	NA	Intergenic	AluSz|SINE|Alu	48894	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr16.1845118.+	chr16	1845118	1845119	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-209	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr6.108315279.-	chr6	108315279	108315280	-	0	NA	Intergenic	AluSz|SINE|Alu	35797	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr1.247469993.-	chr1	247469993	247469994	-	0	NA	"intron (NM_032752, intron 8 of 8)"	AluSx1|SINE|Alu	-25052	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr15.89358733.-	chr15	89358733	89358734	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12059	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chrX.144899968.+	chrX	144899968	144899969	+	0	NA	"intron (NM_032539, intron 1 of 4)"	CpG	621	NM_001144003	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr14.101892673.+	chr14	101892673	101892674	+	0	NA	Intergenic	AluY|SINE|Alu	129340	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr17.18575675.+	chr17	18575675	18575676	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	819	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr14.36549610.-	chr14	36549610	36549611	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9977	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr9.138065650.-	chr9	138065650	138065651	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7805	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr5.1887189.-	chr5	1887189	1887190	-	0	NA	Intergenic	CpG-20520	4309	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr6.150107442.-	chr6	150107442	150107443	-	0	NA	"intron (NM_001252052, intron 3 of 6)"	SVA_D|Other|Other	-36611	NM_001252050	5110	Hs.279257	NM_001252049	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
chr3.109059748.+	chr3	109059748	109059749	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3329	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr8.128765046.+	chr8	128765046	128765047	+	0	NA	Intergenic	AluSx1|SINE|Alu	16731	NM_002467	4609	Hs.202453	NM_002467	ENSG00000136997	MYC	MRTL|bHLHe39|c-Myc	v-myc myelocytomatosis viral oncogene homolog (avian)	protein-coding
chr18.34900356.-	chr18	34900356	34900357	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	"intron (NM_001025089, intron 3 of 11)"	-245644	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr2.109090538.+	chr2	109090538	109090539	+	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	24961	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr7.5396285.-	chr7	5396285	5396286	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	-66892	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr20.5213473.+	chr20	5213473	5213474	+	0	NA	Intergenic	AluJr4|SINE|Alu	81542	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr5.14460461.-	chr5	14460461	14460462	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121430	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr12.69917800.+	chr12	69917800	69917801	+	0	NA	"intron (NM_001042555, intron 2 of 9)"	L1PREC2|LINE|L1	53671	NM_006654	10818	Hs.593446	NM_001042555	ENSG00000166225	FRS2	FRS2A|FRS2alpha|SNT|SNT-1|SNT1	fibroblast growth factor receptor substrate 2	protein-coding
chr6.166825853.+	chr6	166825853	166825854	+	0	NA	"3' UTR (NM_021135, exon 21 of 21)"	"3' UTR (NM_021135, exon 21 of 21)"	-29352	NM_001270879	51660	Hs.172755	NM_001270879	ENSG00000060762	MPC1	BRP44L|MPYCD|dJ68L15.3	mitochondrial pyruvate carrier 1	protein-coding
chr8.48985948.+	chr8	48985948	48985949	+	0	NA	Intergenic	AluSq2|SINE|Alu	64953	NM_003350	7336	Hs.491695	NM_003350		UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding
chr2.42801293.-	chr2	42801293	42801294	-	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	-5622	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr16.89723911.-	chr16	89723911	89723912	-	0	NA	promoter-TSS (NM_153025)	promoter-TSS (NM_153025)	241	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr1.184085049.+	chr1	184085049	184085050	+	0	NA	Intergenic	AluY|SINE|Alu	64238	NR_023349	116461	Hs.548197	NM_001127394	ENSG00000198860	TSEN15	C1orf19|sen15	tRNA splicing endonuclease 15 homolog (S. cerevisiae)	protein-coding
chr8.12522462.+	chr8	12522462	12522463	+	0	NA	"intron (NR_047662, intron 1 of 8)"	"intron (NR_047662, intron 1 of 8)"	658	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr1.97840319.-	chr1	97840319	97840320	-	0	NA	"intron (NM_000110, intron 15 of 22)"	AluSx|SINE|Alu	-278840	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr3.128570150.+	chr3	128570150	128570151	+	0	NA	Intergenic	AluY|SINE|Alu	20234	NR_034179	653712	Hs.653243	NR_034179	ENSG00000231305	LOC653712	-	intraflagellar transport 122 homolog (Chlamydomonas) pseudogene	pseudo
chrX.39968955.+	chrX	39968955	39968956	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	CpG-27857	-12236	NM_001123385	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr11.18743326.-	chr11	18743326	18743327	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4451	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr11.3224530.+	chr11	3224530	3224531	+	0	NA	Intergenic	CpG	-15032	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr2.17721626.-	chr2	17721626	17721627	-	0	NA	promoter-TSS (NM_003385)	promoter-TSS (NM_003385)	181	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
chr19.267156.-	chr19	267156	267157	-	0	NA	Intergenic	CpG	-24013	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr20.43342053.+	chr20	43342053	43342054	+	0	NA	Intergenic	AluSx|SINE|Alu	-1832	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr5.172750348.-	chr5	172750348	172750349	-	0	NA	"exon (NM_003714, exon 3 of 4)"	"exon (NM_003714, exon 3 of 4)"	-6158	NM_003714	8614	Hs.233160	NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
chr10.12344468.+	chr10	12344468	12344469	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47115	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr9.138959039.-	chr9	138959039	138959040	-	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	-28092	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr1.195321150.-	chr1	195321150	195321151	-	0	NA	Intergenic	AluY|SINE|Alu	-1230461	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr5.178491424.-	chr5	178491424	178491425	-	0	NA	"intron (NM_014594, intron 2 of 4)"	"intron (NM_014594, intron 2 of 4)"	-3817	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr11.68218084.+	chr11	68218084	68218085	+	0	NA	Intergenic	AluSz6|SINE|Alu	-10102	NM_001164163	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr12.34501149.+	chr12	34501149	34501150	+	0	NA	Intergenic	GSATII|Satellite|centr	325933	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr3.38081049.+	chr3	38081049	38081050	+	0	NA	"exon (NM_007337, exon 1 of 36)"	"exon (NM_007337, exon 1 of 36)"	353	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr16.4537757.-	chr16	4537757	4537758	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8102	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr17.13504884.-	chr17	13504884	13504885	-	0	NA	"5' UTR (NM_006042, exon 1 of 2)"	"5' UTR (NM_006042, exon 1 of 2)"	-360	NM_006042	9955	Hs.462270	NM_006042	ENSG00000153976	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
chr1.31297002.-	chr1	31297002	31297003	-	0	NA	Intergenic	Intergenic	66319	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr18.512178.-	chr18	512178	512179	-	0	NA	Intergenic	SVA_E|Other|Other	11449	NM_130386	81035	Hs.464422	NM_130386	ENSG00000158270	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin sub-family member 12	protein-coding
chr15.40733853.+	chr15	40733853	40733854	+	0	NA	"intron (NM_014952, intron 1 of 6)"	CpG	442	NM_014952	22893	Hs.22109	NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
chr2.70057314.+	chr2	70057314	70057315	+	0	NA	"intron (NM_178439, intron 1 of 13)"	CpG	496	NM_178439	64395	Hs.293971	NM_178439		GMCL1	BTBD13|GCL|GCL1|SPATA29	"germ cell-less, spermatogenesis associated 1"	protein-coding
chr17.78559363.-	chr17	78559363	78559364	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40738	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr7.810978.+	chr7	810978	810979	+	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	-43665	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr1.17298958.-	chr1	17298958	17298959	-	0	NA	"3' UTR (NM_014675, exon 37 of 37)"	"3' UTR (NM_014675, exon 37 of 37)"	-8215	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr14.31331332.+	chr14	31331332	31331333	+	0	NA	Intergenic	Intergenic	-12409	NM_001135058	1690	Hs.21016	NM_001135058	ENSG00000100473	COCH	COCH-5B2|COCH5B2|DFNA9	"coagulation factor C homolog, cochlin (Limulus polyphemus)"	protein-coding
chr19.15037487.-	chr19	15037487	15037488	-	0	NA	Intergenic	AluSp|SINE|Alu	14814	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr18.29434801.+	chr18	29434801	29434802	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88290	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr17.18755226.-	chr17	18755226	18755227	-	0	NA	Intergenic	Intergenic	4386	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr4.103422421.+	chr4	103422421	103422422	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-65	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr12.132986594.+	chr12	132986594	132986595	+	0	NA	Intergenic	Intergenic	-80563	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr4.6084855.-	chr4	6084855	6084856	-	0	NA	"intron (NM_001099433, intron 5 of 20)"	AluSx1|SINE|Alu	-117463	NM_001099433	152789	Hs.479066	NM_001099433	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
chr9.111476119.+	chr9	111476119	111476120	+	0	NA	Intergenic	L1PA7|LINE|L1	142156	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr20.3879940.+	chr20	3879940	3879941	+	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	9477	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr2.8825541.+	chr2	8825541	8825542	+	0	NA	TTS (NM_002166)	TTS (NM_002166)	3428	NM_002166	3398	Hs.726053	NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	"inhibitor of DNA binding 2, dominant negative helix-loop-helix protein"	protein-coding
chr6.138984640.+	chr6	138984640	138984641	+	0	NA	Intergenic	AluSp|SINE|Alu	-28165	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr6.333824.+	chr6	333824	333825	+	0	NA	"intron (NM_020185, intron 3 of 7)"	"intron (NM_020185, intron 3 of 7)"	41723	NM_020185	56940	Hs.29106	NM_020185		DUSP22	JKAP|JSP1|LMWDSP2|MKPX|VHX	dual specificity phosphatase 22	protein-coding
chr7.158462272.-	chr7	158462272	158462273	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35248	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr13.112726538.+	chr13	112726538	112726539	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4625	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr9.38829821.+	chr9	38829821	38829822	+	0	NA	Intergenic	AluY|SINE|Alu	208736	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr2.241865511.-	chr2	241865511	241865512	-	0	NA	Intergenic	Intergenic	29938	NM_001085437	79919	Hs.193745	NM_001085437	ENSG00000172478	C2orf54	-	chromosome 2 open reading frame 54	protein-coding
chrX.21676538.-	chrX	21676538	21676539	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	90	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr4.55034959.+	chr4	55034959	55034960	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60305	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr5.14460459.-	chr5	14460459	14460460	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121432	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr3.74440928.-	chr3	74440928	74440929	-	0	NA	"intron (NM_020872, intron 4 of 21)"	AluSx3|SINE|Alu	-129415	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
chr2.27526294.+	chr2	27526294	27526295	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4836	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr16.4823711.+	chr16	4823711	4823712	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6545	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr14.101924872.-	chr14	101924872	101924873	-	0	NA	Intergenic	CpG	-97141	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr3.73614815.+	chr3	73614815	73614816	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59257	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chrM.2984.+	chrM	2984	2985	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr10.122148821.+	chr10	122148821	122148822	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67645	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr6.45365124.-	chr6	45365124	45365125	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19336	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr12.95069.-	chr12	95069	95070	-	0	NA	Intergenic	TAR1|Satellite|telo	-7085	NR_028269	100288778	Hs.585931	NR_028269		LOC100288778	-	WAS protein family homolog 1 pseudogene	pseudo
chr4.84864620.+	chr4	84864620	84864621	+	0	NA	Intergenic	SVA_D|Other|Other	407150	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr12.77339567.-	chr12	77339567	77339568	-	0	NA	Intergenic	AluY|SINE|Alu	66768	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr14.97183862.+	chr14	97183862	97183863	+	0	NA	Intergenic	AluY|SINE|Alu	-79822	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr14.30397075.+	chr14	30397075	30397076	+	0	NA	promoter-TSS (NM_002742)	promoter-TSS (NM_002742)	-176	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
chr16.85512900.-	chr16	85512900	85512901	-	0	NA	Intergenic	AluY|SINE|Alu	132129	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr11.65549260.+	chr11	65549260	65549261	+	0	NA	Intergenic	CpG-4364	-1198	NM_138368	91056	Hs.591957	NM_138368		AP5B1	AP-5|PP1030	"adaptor-related protein complex 5, beta 1 subunit"	protein-coding
chr10.75633515.+	chr10	75633515	75633516	+	0	NA	"intron (NM_172173, intron 1 of 19)"	GC_rich|Low_complexity|Low_complexity	834	NM_001222	818	Hs.523045	NM_001204492	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG	calcium/calmodulin-dependent protein kinase II gamma	protein-coding
chr1.202053511.-	chr1	202053511	202053512	-	0	NA	Intergenic	AluSq2|SINE|Alu	38518	NM_004767	9283	Hs.132049	NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
chr10.120946133.-	chr10	120946133	120946134	-	0	NA	Intergenic	AluY|SINE|Alu	7788	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr22.51126410.-	chr22	51126410	51126411	-	0	NA	"intron (NM_033517, intron 9 of 21)"	"intron (NM_033517, intron 9 of 21)"	-13340	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr1.226350691.-	chr1	226350691	226350692	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23732	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr2.240371777.-	chr2	240371777	240371778	-	0	NA	Intergenic	SVA_D|Other|Other	49134	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr17.38400023.+	chr17	38400023	38400024	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24449	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr17.2603695.+	chr17	2603695	2603696	+	0	NA	"exon (NM_015229, exon 9 of 26)"	"exon (NM_015229, exon 9 of 26)"	11232	NM_015229	23277	Hs.22616	NM_015229	ENSG00000132361	CLUH	CLU1|KIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding
chr7.56109594.-	chr7	56109594	56109595	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9674	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr22.49812478.-	chr22	49812478	49812479	-	0	NA	Intergenic	Intergenic	-238712	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chrX.81762749.+	chrX	81762749	81762750	+	0	NA	Intergenic	AluY|SINE|Alu	-1000520	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr2.11541673.+	chr2	11541673	11541674	+	0	NA	"intron (NR_047499, intron 2 of 2)"	AluY|SINE|Alu	7566	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	miscRNA
chr20.18441271.-	chr20	18441271	18441272	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6558	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr14.104179763.-	chr14	104179763	104179764	-	0	NA	"intron (NM_001100119, intron 1 of 9)"	"intron (NM_001100119, intron 1 of 9)"	-2060	NM_001100118	7517	Hs.733412	NM_001100118	ENSG00000126215	XRCC3	CMM6	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding
chr18.60740399.+	chr18	60740399	60740400	+	0	NA	Intergenic	AluYb8|SINE|Alu	246214	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr2.33708702.+	chr2	33708702	33708703	+	0	NA	"intron (NM_001139488, intron 1 of 17)"	AluSx1|SINE|Alu	7381	NM_001139488	25780	Hs.143674	NM_001139488	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
chr15.102520493.-	chr15	102520493	102520494	-	0	NA	Intergenic	TAR1|Satellite|telo	1197	NR_051985	100288486	Hs.644359	NR_034090	ENSG00000248472	DDX11L9	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9	pseudo
chr16.1075326.+	chr16	1075326	1075327	+	0	NA	Intergenic	Intergenic	43518	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
chr14.70041121.-	chr14	70041121	70041122	-	0	NA	"intron (NM_001271507, intron 1 of 1)"	"intron (NM_001271507, intron 1 of 1)"	-479	NM_001271507	56936	Hs.458319	NM_001271507		CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
chr14.21741110.-	chr14	21741110	21741111	-	0	NA	Intergenic	AluSx1|SINE|Alu	3472	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr2.216932770.-	chr2	216932770	216932771	-	0	NA	"intron (NM_018441, intron 1 of 7)"	AluSg|SINE|Alu	-13769	NM_018441	55825	Hs.281680	NM_018441	ENSG00000115425	PECR	DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding
chr5.172522336.-	chr5	172522336	172522337	-	0	NA	"intron (NM_153607, intron 4 of 8)"	AluY|SINE|Alu	-38981	NM_153607	153222	Hs.484195	NM_001168393	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
chr12.49163955.-	chr12	49163955	49163956	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1865	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr8.66557358.+	chr8	66557358	66557359	+	0	NA	"intron (NM_001145839, intron 1 of 6)"	CpG	470	NM_014637	9650	Hs.584788	NM_001145838	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
chr7.1592413.-	chr7	1592413	1592414	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	AluSx1|SINE|Alu	-3653	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr9.136039057.+	chr9	136039057	136039058	+	0	NA	"intron (NM_021996, intron 1 of 6)"	CpG	244	NM_021996	26301	Hs.495419	NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	"globoside alpha-1,3-N-acetylgalactosaminyltransferase 1"	protein-coding
chr11.67817486.+	chr11	67817486	67817487	+	0	NA	"exon (NM_006053, exon 12 of 15)"	"exon (NM_006053, exon 12 of 15)"	7039	NM_006053	10312	Hs.495985	NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	"T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3"	protein-coding
chr19.4141892.-	chr19	4141892	4141893	-	0	NA	Intergenic	AluY|SINE|Alu	11706	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr12.32064900.-	chr12	32064900	32064901	-	0	NA	Intergenic	AluY|SINE|Alu	47453	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr1.54775682.+	chr1	54775682	54775683	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96297	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr13.114239632.-	chr13	114239632	114239633	-	0	NA	"intron (NM_007111, intron 1 of 11)"	"intron (NM_007111, intron 1 of 11)"	-576	NM_007111	7027	Hs.79353	NM_007111	ENSG00000198176	TFDP1	DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
chr14.102954959.-	chr14	102954959	102954960	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21169	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr22.42027281.+	chr22	42027281	42027282	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9986	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr20.3148780.-	chr20	3148780	3148781	-	0	NA	"5' UTR (NM_014731, exon 1 of 3)"	"5' UTR (NM_014731, exon 1 of 3)"	-427	NM_014731	9762	Hs.90232	NM_014731	ENSG00000088899	LZTS3	PROSAPIP1|RP5-1187M17.10	"leucine zipper, putative tumor suppressor family member 3"	protein-coding
chr7.2297205.-	chr7	2297205	2297206	-	0	NA	"intron (NM_013321, intron 8 of 10)"	CpG-23885	-14665	NM_198953	4521	Hs.534331	NM_002452	ENSG00000106268	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
chr3.128194307.-	chr3	128194307	128194308	-	0	NA	Intergenic	Intergenic	8216	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr5.3188293.-	chr5	3188293	3188294	-	0	NA	Intergenic	CpG	-347915	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr22.46326545.-	chr22	46326545	46326546	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46463	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr13.21894207.-	chr13	21894207	21894208	-	0	NA	"intron (NR_046461, intron 2 of 4)"	CpG	-21943	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr10.95605019.+	chr10	95605019	95605020	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-48711	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr10.125611161.+	chr10	125611161	125611162	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40339	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr8.86574485.+	chr8	86574485	86574486	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	257	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr1.8021817.+	chr1	8021817	8021818	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	103	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr9.121440470.-	chr9	121440470	121440471	-	0	NA	Intergenic	SVA_B|Other|Other	-691269	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr7.532128.+	chr7	532128	532129	+	0	NA	Intergenic	Intergenic	27353	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr15.59685732.-	chr15	59685732	59685733	-	0	NA	Intergenic	AluSg4|SINE|Alu	20661	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
chr19.2269313.-	chr19	2269313	2269314	-	0	NA	promoter-TSS (NM_004152)	promoter-TSS (NM_004152)	207	NM_004152	4946	Hs.446427	NM_004152	ENSG00000104904	OAZ1	AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
chr16.15092280.+	chr16	15092280	15092281	+	0	NA	"intron (NM_015027, intron 3 of 22)"	"intron (NM_015027, intron 3 of 22)"	23447	NM_015027	23042	Hs.370781	NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal-dependent decarboxylase domain containing 1	protein-coding
chr11.134632876.-	chr11	134632876	134632877	-	0	NA	Intergenic	CpG	-326500	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr5.160463938.-	chr5	160463938	160463939	-	0	NA	Intergenic	AluY|SINE|Alu	98305	NR_027111	285629	Hs.554279	NR_027111	ENSG00000253417	LOC285629	-	uncharacterized LOC285629	miscRNA
chrX.67937613.-	chrX	67937613	67937614	-	0	NA	"exon (NM_014725, exon 5 of 14)"	"exon (NM_014725, exon 5 of 14)"	-24131	NM_001142504	9754	Hs.95140	NM_001142503	ENSG00000130052	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR-related lipid transfer (START) domain containing 8	protein-coding
chr12.118079880.+	chr12	118079880	118079881	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280273	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr17.4708708.+	chr17	4708708	4708709	+	0	NA	Intergenic	AluSp|SINE|Alu	-1688	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr13.88664968.+	chr13	88664968	88664969	+	0	NA	Intergenic	AluSx1|SINE|Alu	340098	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr3.149374879.-	chr3	149374879	149374880	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-933	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr10.135075424.-	chr10	135075424	135075425	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14300	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr5.108146243.+	chr5	108146243	108146244	+	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	62720	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chr12.70156400.-	chr12	70156400	70156401	-	0	NA	"intron (NM_022456, intron 3 of 10)"	AluY|SINE|Alu	16354	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
chr20.4729622.+	chr20	4729622	4729623	+	0	NA	Intergenic	Intergenic	-8308	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr1.10551178.+	chr1	10551178	10551179	+	0	NA	"intron (NM_004565, intron 1 of 8)"	AluSx|SINE|Alu	16175	NM_004565	5195	Hs.149983	NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
chrX.69569464.-	chrX	69569464	69569465	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59585	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr11.16894129.+	chr11	16894129	16894130	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133981	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr19.13321451.-	chr19	13321451	13321452	-	0	NA	"exon (NM_001127221, exon 44 of 47)"	"exon (NM_001127221, exon 44 of 47)"	-60169	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr17.27717841.+	chr17	27717841	27717842	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-102	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr9.130375480.+	chr9	130375480	130375481	+	0	NA	"intron (NM_003165, intron 1 of 19)"	"intron (NM_003165, intron 1 of 19)"	994	NM_003165	6812	Hs.288229	NM_001032221	ENSG00000136854	STXBP1	MUNC18-1|NSEC1|P67|RBSEC1|UNC18	syntaxin binding protein 1	protein-coding
chr7.80622725.+	chr7	80622725	80622726	+	0	NA	Intergenic	AluY|SINE|Alu	-74058	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C"	protein-coding
chr2.109308537.+	chr2	109308537	109308538	+	0	NA	Intergenic	AluY|SINE|Alu	-27400	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr2.108214727.+	chr2	108214727	108214728	+	0	NA	Intergenic	AluSg|SINE|Alu	227856	NR_024439	729121	Hs.386155	XR_159390	ENSG00000230651	LOC729121	-	uncharacterized LOC729121	miscRNA
chr10.118500971.+	chr10	118500971	118500972	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1114	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr19.1775870.+	chr19	1775870	1775871	+	0	NA	TTS (NM_001080488)	TTS (NM_001080488)	22208	NM_001080488	390874	Hs.654347	NM_001080488		ONECUT3	OC3	one cut homeobox 3	protein-coding
chr17.37768956.-	chr17	37768956	37768957	-	0	NA	Intergenic	Intergenic	4781	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr20.62457901.+	chr20	62457901	62457902	+	0	NA	Intergenic	AluY|SINE|Alu	-21045	NM_025224	140685	Hs.585028	NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
chr5.172640588.-	chr5	172640588	172640589	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-21727	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr12.105389754.-	chr12	105389754	105389755	-	0	NA	Intergenic	AluY|SINE|Alu	-9656	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr8.145171583.+	chr8	145171583	145171584	+	0	NA	"non-coding (NR_024207, exon 23 of 23)"	"non-coding (NR_024207, exon 23 of 23)"	8954	NR_024207	340390	Hs.98723	NM_032529	ENSG00000179698	KIAA1875	-	KIAA1875	miscRNA
chr5.149874626.-	chr5	149874626	149874627	-	0	NA	Intergenic	Intergenic	13048	NM_001543	3340	Hs.222055	NM_001543	ENSG00000070614	NDST1	HSST|NST1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding
chr7.821274.-	chr7	821274	821275	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33920	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr7.36403850.-	chr7	36403850	36403851	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2932	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr7.77452555.-	chr7	77452555	77452556	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16892	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr7.1798875.+	chr7	1798875	1798876	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50077	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr2.202092571.+	chr2	202092571	202092572	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5595	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr16.53448444.+	chr16	53448444	53448445	+	0	NA	Intergenic	AluSp|SINE|Alu	-19907	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr19.10041351.+	chr19	10041351	10041352	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5719	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr19.10381454.+	chr19	10381454	10381455	+	0	NA	promoter-TSS (NM_000201)	promoter-TSS (NM_000201)	-63	NM_000201	3383	Hs.643447	NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
chr19.36870134.+	chr19	36870134	36870135	+	0	NA	promoter-TSS (NM_020917)	promoter-TSS (NM_020917)	-29	NM_020917	57677	Hs.35524	NM_020917		ZFP14	ZNF531	ZFP14 zinc finger protein	protein-coding
chr1.65532971.+	chr1	65532971	65532972	+	0	NA	Intergenic	CpG	-8780	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr22.50876251.+	chr22	50876251	50876252	+	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	37213	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr2.73402909.-	chr2	73402909	73402910	-	0	NA	Intergenic	CpG	26477	NM_001134462	344022	Hs.694384	NM_001134462		NOTO	-	notochord homeobox	protein-coding
chr12.32064893.-	chr12	32064893	32064894	-	0	NA	Intergenic	AluY|SINE|Alu	47460	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr7.95178739.-	chr7	95178739	95178740	-	0	NA	Intergenic	AluY|SINE|Alu	-47186	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr9.120507389.+	chr9	120507389	120507390	+	0	NA	Intergenic	CpG	40936	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr3.125174746.-	chr3	125174746	125174747	-	0	NA	"intron (NR_073435, intron 10 of 12)"	AluY|SINE|Alu	-64312	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr14.77352025.-	chr14	77352025	77352026	-	0	NA	Intergenic	Intergenic	-59300	NM_194287	145497	Hs.147276	NM_194287	ENSG00000100565	C14orf166B	-	chromosome 14 open reading frame 166B	protein-coding
chr12.132353193.+	chr12	132353193	132353194	+	0	NA	Intergenic	Intergenic	-26086	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr19.21734807.-	chr19	21734807	21734808	-	0	NA	Intergenic	SVA_D|Other|Other	-46370	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr16.85371288.+	chr16	85371288	85371289	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-31357	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr6.39760251.-	chr6	39760251	39760252	-	0	NA	promoter-TSS (NM_001201427)	promoter-TSS (NM_001201427)	-92	NM_001201427	23500	Hs.357128	NM_001201427	ENSG00000146122	DAAM2	dJ90A20A.1	dishevelled associated activator of morphogenesis 2	protein-coding
chr5.1770150.-	chr5	1770150	1770151	-	0	NA	Intergenic	L1MB5|LINE|L1	-29806	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr9.20614267.+	chr9	20614267	20614268	+	0	NA	"intron (NM_004529, intron 2 of 10)"	AluSq2|SINE|Alu	8247	NM_004529	4300	Hs.591085	NM_004529		MLLT3	AF9|YEATS3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3"	protein-coding
chr16.87903521.+	chr16	87903521	87903522	+	0	NA	promoter-TSS (NM_003486)	promoter-TSS (NM_003486)	-421	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr17.47363970.+	chr17	47363970	47363971	+	0	NA	Intergenic	AluSx|SINE|Alu	38365	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr5.29531137.-	chr5	29531137	29531138	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604160	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr20.33062678.-	chr20	33062678	33062679	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8548	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr13.78493292.-	chr13	78493292	78493293	-	0	NA	promoter-TSS (NM_003991)	promoter-TSS (NM_003991)	326	NM_001122659	1910	Hs.82002	NM_000115	ENSG00000136160	EDNRB	ABCDS|ET-B|ET-BR|ETB|ETBR|ETRB|HSCR|HSCR2|WS4A	endothelin receptor type B	protein-coding
chr19.8298143.-	chr19	8298143	8298144	-	0	NA	"intron (NM_024552, intron 2 of 11)"	AluSx|SINE|Alu	-23926	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
chr2.237068214.-	chr2	237068214	237068215	-	0	NA	Intergenic	CpG	-8438	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr1.79749329.-	chr1	79749329	79749330	-	0	NA	Intergenic	AluSx|SINE|Alu	276834	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr8.14882342.-	chr8	14882342	14882343	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171323	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr15.90470267.+	chr15	90470267	90470268	+	0	NA	Intergenic	AluY|SINE|Alu	-14045	NM_182616	348110	Hs.6734	NM_182616		C15orf38	-	chromosome 15 open reading frame 38	protein-coding
chr3.74440926.+	chr3	74440926	74440927	+	0	NA	"intron (NM_020872, intron 4 of 21)"	AluSx3|SINE|Alu	129417	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
chr5.39649212.+	chr5	39649212	39649213	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223877	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr11.1435518.-	chr11	1435518	1435519	-	0	NA	"intron (NM_001256630, intron 1 of 19)"	"intron (NM_001256630, intron 1 of 19)"	-3136	NM_001256630	9024	Hs.170819	NM_001256627	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|STK29	BR serine/threonine kinase 2	protein-coding
chr5.176292813.+	chr5	176292813	176292814	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33520	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr16.1842956.-	chr16	1842956	1842957	-	0	NA	"intron (NM_001146006, intron 1 of 1)"	"intron (NM_001146006, intron 1 of 1)"	-778	NM_004970	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr12.34500194.+	chr12	34500194	34500195	+	0	NA	Intergenic	Intergenic	324978	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr8.86544447.-	chr8	86544447	86544448	-	0	NA	Intergenic	AluSp|SINE|Alu	-23458	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chrX.42144999.+	chrX	42144999	42145000	+	0	NA	Intergenic	SVA_D|Other|Other	-362712	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr5.14460452.-	chr5	14460452	14460453	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121439	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr11.83150038.+	chr11	83150038	83150039	+	0	NA	Intergenic	AluSx|SINE|Alu	-152661	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr16.209957.+	chr16	209957	209958	+	0	NA	Intergenic	Intergenic	-6016	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr8.90586394.-	chr8	90586394	90586395	-	0	NA	Intergenic	AluY|SINE|Alu	183581	NM_003821	8767	Hs.103755	NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor-interacting serine-threonine kinase 2	protein-coding
chr1.197418612.-	chr1	197418612	197418613	-	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	-181278	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr9.36859997.+	chr9	36859997	36859998	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4308	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr17.46187000.+	chr17	46187000	46187001	+	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	2053	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr8.216723.-	chr8	216723	216724	-	0	NA	Intergenic	CpG	-34339	NM_001042416	169270	Hs.591388	NM_001042415	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
chr5.29531053.-	chr5	29531053	29531054	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604076	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr12.51681480.-	chr12	51681480	51681481	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17278	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr1.114299618.+	chr1	114299618	114299619	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2159	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr19.45678460.+	chr19	45678460	45678461	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3041	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr8.143165017.+	chr8	143165017	143165018	+	0	NA	Intergenic	Intergenic	-92683	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr17.1140544.+	chr17	1140544	1140545	+	0	NA	Intergenic	AluYk4|SINE|Alu	-33314	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr16.75395287.-	chr16	75395287	75395288	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluSz|SINE|Alu	-72100	NM_006324	10428	Hs.461361	NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
chr1.3022482.+	chr1	3022482	3022483	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22057	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr2.202046033.-	chr2	202046033	202046034	-	0	NA	Intergenic	AluSz|SINE|Alu	1588	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr17.65766229.+	chr17	65766229	65766230	+	0	NA	Intergenic	AluSg4|SINE|Alu	29443	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr18.29434815.+	chr18	29434815	29434816	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88276	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr1.2498982.+	chr1	2498982	2498983	+	0	NA	Intergenic	Intergenic	-10532	NR_037844	100133445	Hs.602652	NR_037844		LOC100133445	-	uncharacterized LOC100133445	miscRNA
chr22.26439737.+	chr22	26439737	26439738	+	0	NA	Intergenic	AluSx3|SINE|Alu	-125703	NM_001184773	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr11.66997288.-	chr11	66997288	66997289	-	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	10218	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr4.619390.+	chr4	619390	619391	+	0	NA	promoter-TSS (NM_001145291)	promoter-TSS (NM_001145291)	27	NM_001145291	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr17.40511844.-	chr17	40511844	40511845	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluY|SINE|Alu	-28561	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr12.66636821.-	chr12	66636821	66636822	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53843	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr17.45349551.-	chr17	45349551	45349552	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18343	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr2.126013199.+	chr2	126013199	126013200	+	0	NA	Intergenic	AluSc8|SINE|Alu	1230335	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr2.203729831.-	chr2	203729831	203729832	-	0	NA	"intron (NM_138468, intron 2 of 13)"	AluSx|SINE|Alu	-6364	NM_178231	130026	Hs.516629	NM_138468		ICA1L	ALS2CR14|ALS2CR15	"islet cell autoantigen 1,69kDa-like"	protein-coding
chrX.23801515.+	chrX	23801515	23801516	+	0	NA	"exon (NM_002970, exon 1 of 6)"	"exon (NM_002970, exon 1 of 6)"	240	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr2.122878786.+	chr2	122878786	122878787	+	0	NA	Intergenic	AluY|SINE|Alu	365665	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr8.39197390.+	chr8	39197390	39197391	+	0	NA	"intron (NR_001448, intron 7 of 14)"	SVA_B|Other|Other	25208	NR_001448	255926	Hs.369765	NR_001448	ENSG00000196115	ADAM5	ADAM5P|TMDCII	"ADAM metallopeptidase domain 5, pseudogene"	pseudo
chr10.101292633.+	chr10	101292633	101292634	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-57	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr3.42630505.-	chr3	42630505	42630506	-	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	1793	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr11.638973.-	chr11	638973	638974	-	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	-1668	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr17.78559370.-	chr17	78559370	78559371	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40745	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr4.39399551.+	chr4	39399551	39399552	+	0	NA	Intergenic	AluSx|SINE|Alu	-8922	NM_175737	152831	Hs.90756	NM_175737	ENSG00000134962	KLB	BKL	klotho beta	protein-coding
chr18.64189483.+	chr18	64189483	64189484	+	0	NA	"intron (NR_073130, intron 9 of 11)"	AluY|SINE|Alu	81892	NR_073130	28513	Hs.42771	NM_001271028	ENSG00000071991	CDH19	CDH7|CDH7L2	"cadherin 19, type 2"	protein-coding
chr12.49163956.-	chr12	49163956	49163957	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1864	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr3.13876365.+	chr3	13876365	13876366	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45253	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr8.85063587.+	chr8	85063587	85063588	+	0	NA	Intergenic	AluY|SINE|Alu	-31866	NM_001100393	138046	Hs.121663	NM_001100391	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
chr17.21215296.+	chr17	21215296	21215297	+	0	NA	"intron (NM_145109, intron 9 of 11)"	"intron (NM_145109, intron 9 of 11)"	23948	NM_002756	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
chr9.10974560.+	chr9	10974560	10974561	+	0	NA	Intergenic	L1PBa|LINE|L1	-361837	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr6.17450425.+	chr6	17450425	17450426	+	0	NA	"intron (NM_006366, intron 3 of 12)"	AluY|SINE|Alu	56689	NM_006366	10486	Hs.132902	NM_006366	ENSG00000112186	CAP2	-	"CAP, adenylate cyclase-associated protein, 2 (yeast)"	protein-coding
chr4.1358085.+	chr4	1358085	1358086	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16981	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr19.38755104.-	chr19	38755104	38755105	-	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	-6	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr17.4488402.-	chr17	4488402	4488403	-	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	-568	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr11.9479237.-	chr11	9479237	9479238	-	0	NA	Intergenic	AluSg|SINE|Alu	-3008	NR_036539	644656	Hs.597846	NR_036539		LOC644656	-	uncharacterized LOC644656	miscRNA
chr20.61703544.-	chr20	61703544	61703545	-	0	NA	"intron (NR_033370, intron 1 of 4)"	CpG	29100	NR_003244	768096	Hs.549606	NR_003244		HAR1A	HAR1F|LINC00064|NCRNA00064	highly accelerated region 1A (non-protein coding)	miscRNA
chr2.81982290.+	chr2	81982290	81982291	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101637	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr6.34857455.-	chr6	34857455	34857456	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-417	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr16.4760999.-	chr16	4760999	4761000	-	0	NA	"intron (NM_001242929, intron 4 of 14)"	AluSz|SINE|Alu	-17305	NM_001193452	84309	Hs.513315	NM_001193452	ENSG00000168101	NUDT16L1	SDOS	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding
chr11.8302428.-	chr11	8302428	8302429	-	0	NA	Intergenic	AluY|SINE|Alu	12246	NM_001270428	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
chr11.126873215.+	chr11	126873215	126873216	+	0	NA	"non-coding (NR_040078, exon 1 of 3)"	"non-coding (NR_040078, exon 1 of 3)"	410	NR_040078	283165	Hs.730461	NM_173579	ENSG00000218109	KIRREL3-AS3	NCRNA00288|PRR10	KIRREL3 antisense RNA 3	miscRNA
chr13.19683423.+	chr13	19683423	19683424	+	0	NA	Intergenic	L1PA2|LINE|L1	-33699	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr19.267158.-	chr19	267158	267159	-	0	NA	Intergenic	CpG	-24011	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr1.65532958.+	chr1	65532958	65532959	+	0	NA	Intergenic	CpG	-8767	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr3.14349521.+	chr3	14349521	14349522	+	0	NA	Intergenic	Intergenic	-94585	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr3.164852012.+	chr3	164852012	164852013	+	0	NA	Intergenic	AluY|SINE|Alu	-55729	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr9.138959061.+	chr9	138959061	138959062	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28070	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr15.41539532.-	chr15	41539532	41539533	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16095	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr3.149374877.+	chr3	149374877	149374878	+	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	935	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr5.156483594.-	chr5	156483594	156483595	-	0	NA	"intron (NM_012206, intron 1 of 7)"	AluY|SINE|Alu	-1893	NM_001099414	26762	Hs.129711	NM_001099414	ENSG00000113249	HAVCR1	HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
chr2.190692837.-	chr2	190692837	190692838	-	0	NA	"intron (NM_001128143, intron 5 of 11)"	AluY|SINE|Alu	43740	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr17.5148722.-	chr17	5148722	5148723	-	0	NA	Intergenic	AluSq|SINE|Alu	10567	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr20.32958699.+	chr20	32958699	32958700	+	0	NA	"intron (NM_001257137, intron 2 of 25)"	AluY|SINE|Alu	7658	NM_031483	83737	Hs.632272	NM_001257137	ENSG00000078747	ITCH	AIF4|AIP4|NAPP1|dJ468O1.1	itchy E3 ubiquitin protein ligase	protein-coding
chr7.158504078.-	chr7	158504078	158504079	-	0	NA	Intergenic	AluY|SINE|Alu	6558	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr16.1542164.-	chr16	1542164	1542165	-	0	NA	Intergenic	L2a|LINE|L2	1188	NM_016111	9894	Hs.271044	NM_016111	ENSG00000100726	TELO2	CLK2|TEL2	"TEL2, telomere maintenance 2, homolog (S. cerevisiae)"	protein-coding
chr17.79611143.-	chr17	79611143	79611144	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1794	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr1.21380296.-	chr1	21380296	21380297	-	0	NA	"intron (NM_003760, intron 1 of 31)"	SVA_D|Other|Other	-57580	NM_003760	8672	Hs.732241	NM_001198801	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	"eukaryotic translation initiation factor 4 gamma, 3"	protein-coding
chr10.35223747.+	chr10	35223747	35223748	+	0	NA	Intergenic	AluSx4|SINE|Alu	-119494	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr7.1798877.-	chr7	1798877	1798878	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50079	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr9.120507366.-	chr9	120507366	120507367	-	0	NA	Intergenic	CpG	-40913	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr5.74349212.-	chr5	74349212	74349213	-	0	NA	Intergenic	CpG	22488	NM_016591	51301	Hs.272404	NM_016591	ENSG00000176928	GCNT4	C2GNT3	"glucosaminyl (N-acetyl) transferase 4, core 2"	protein-coding
chr5.96271780.-	chr5	96271780	96271781	-	0	NA	"5' UTR (NM_005575, exon 1 of 18)"	"5' UTR (NM_005575, exon 1 of 18)"	-434	NM_005575	4012	Hs.656905	NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl/cystinyl aminopeptidase	protein-coding
chr22.44995167.+	chr22	44995167	44995168	+	0	NA	Intergenic	L2|LINE|L2	26132	NR_044991	414351	Hs.572878	NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	miscRNA
chr8.6179660.-	chr8	6179660	6179661	-	0	NA	Intergenic	AluSx|SINE|Alu	-84409	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	miscRNA
chr6.170480310.+	chr6	170480310	170480311	+	0	NA	Intergenic	Intergenic	91347	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr6.109169612.+	chr6	109169612	109169613	+	0	NA	promoter-TSS (NM_032131)	promoter-TSS (NM_032131)	-7	NM_032131	84071	Hs.645481	NM_032131	ENSG00000118690	ARMC2	bA787I22.1	armadillo repeat containing 2	protein-coding
chr18.77627550.-	chr18	77627550	77627551	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3882	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr12.117605428.+	chr12	117605428	117605429	+	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	22872	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr9.137722643.+	chr9	137722643	137722644	+	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	18572	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr19.23391308.-	chr19	23391308	23391309	-	0	NA	Intergenic	AluYb8|SINE|Alu	-41864	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr16.440473.+	chr16	440473	440474	+	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	-6719	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chrX.125299943.+	chrX	125299943	125299944	+	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	137	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr5.1770137.-	chr5	1770137	1770138	-	0	NA	Intergenic	L1MB5|LINE|L1	-29819	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr7.62940004.-	chr7	62940004	62940005	-	0	NA	Intergenic	AluYf4|SINE|Alu	80585	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr3.42642480.+	chr3	42642480	42642481	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	92	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr11.334598.-	chr11	334598	334599	-	0	NA	Intergenic	Intergenic	13684	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr20.35167615.+	chr20	35167615	35167616	+	0	NA	Intergenic	AluY|SINE|Alu	-2272	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr2.1563006.-	chr2	1563006	1563007	-	0	NA	Intergenic	Intergenic	-144826	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr2.86777040.+	chr2	86777040	86777041	+	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	13580	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr3.82554744.-	chr3	82554744	82554745	-	0	NA	Intergenic	MER52A|LTR|ERV1	743794	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr19.41060233.+	chr19	41060233	41060234	+	0	NA	"exon (NM_025213, exon 6 of 10)"	"exon (NM_025213, exon 6 of 10)"	-22524	NM_138392	92799	Hs.26506	NM_138392	ENSG00000160410	SHKBP1	Sb1	SH3KBP1 binding protein 1	protein-coding
chr8.124401630.-	chr8	124401630	124401631	-	0	NA	"intron (NM_014109, intron 1 of 27)"	AluY|SINE|Alu	-7075	NM_014109	29028	Hs.370834	NM_014109	ENSG00000156802	ATAD2	ANCCA|PRO2000	"ATPase family, AAA domain containing 2"	protein-coding
chr8.11739690.-	chr8	11739690	11739691	-	0	NA	Intergenic	AluSx1|SINE|Alu	14044	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr20.62512933.-	chr20	62512933	62512934	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13522	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr5.86548504.+	chr5	86548504	86548505	+	0	NA	Intergenic	AluSc8|SINE|Alu	-15566	NM_002890	5921	Hs.664080	NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP	RAS p21 protein activator (GTPase activating protein) 1	protein-coding
chr3.183052324.-	chr3	183052324	183052325	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81292	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr17.2323435.-	chr17	2323435	2323436	-	0	NA	"exon (NM_024086, exon 10 of 10)"	"exon (NM_024086, exon 10 of 10)"	4705	NR_028335	284009	Hs.632244	NR_028335		LOC284009	-	uncharacterized LOC284009	miscRNA
chr2.240371786.+	chr2	240371786	240371787	+	0	NA	Intergenic	SVA_D|Other|Other	-49143	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr19.1148221.-	chr19	1148221	1148222	-	0	NA	"intron (NM_014963, intron 3 of 31)"	"intron (NM_014963, intron 3 of 31)"	15948	NM_001100122	22904	Hs.408708	NM_001100122	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
chr15.41443914.+	chr15	41443914	41443915	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35574	NM_017553	54617	Hs.292949	NM_017553	ENSG00000128908	INO80	INO80A|INOC1|hINO80	INO80 homolog (S. cerevisiae)	protein-coding
chr16.9185075.+	chr16	9185075	9185076	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-462	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr17.7183163.-	chr17	7183163	7183164	-	0	NA	Intergenic	AluSx|SINE|Alu	1891	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr7.61969295.-	chr7	61969295	61969296	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-795139	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr10.70231734.+	chr10	70231734	70231735	+	0	NA	promoter-TSS (NM_001080449)	promoter-TSS (NM_001080449)	-4	NM_001080449	1763	Hs.532446	NM_001080449	ENSG00000138346	DNA2	DNA2L|hDNA2	DNA replication helicase 2 homolog (yeast)	protein-coding
chr22.50745931.+	chr22	50745931	50745932	+	0	NA	promoter-TSS (NM_012401)	promoter-TSS (NM_012401)	70	NM_012401	23654	Hs.736016	NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3	plexin B2	protein-coding
chrX.70493495.+	chrX	70493495	70493496	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9547	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr11.68153274.+	chr11	68153274	68153275	+	0	NA	"intron (NM_002335, intron 5 of 22)"	"intron (NM_002335, intron 5 of 22)"	73166	NM_002335	4041	Hs.6347	NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
chr7.64198959.+	chr7	64198959	64198960	+	0	NA	Intergenic	SVA_D|Other|Other	-55807	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr4.758224.-	chr4	758224	758225	-	0	NA	"intron (NM_006315, intron 9 of 10)"	"intron (NM_006315, intron 9 of 10)"	-17412	NR_036512	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	miscRNA
chrX.53123431.+	chrX	53123431	53123432	+	0	NA	Intergenic	CpG	11889	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.112055894.+	chr12	112055894	112055895	+	0	NA	Intergenic	AluJb|SINE|Alu	-18414	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chr15.66993591.+	chr15	66993591	66993592	+	0	NA	Intergenic	CpG	-1083	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr12.132623248.+	chr12	132623248	132623249	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5632	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr2.130899430.+	chr2	130899430	130899431	+	0	NA	"intron (NM_207310, intron 3 of 7)"	"intron (NM_207310, intron 3 of 7)"	3277	NM_001258307	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chr12.34492700.+	chr12	34492700	34492701	+	0	NA	Intergenic	GSATII|Satellite|centr	317484	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.89746518.-	chr5	89746518	89746519	-	0	NA	Intergenic	AluSz|SINE|Alu	-24067	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr6.7479213.-	chr6	7479213	7479214	-	0	NA	Intergenic	AluSq2|SINE|Alu	62657	NM_001008844	1832	Hs.519873	NM_001008844	ENSG00000096696	DSP	DP|DPI|DPII	desmoplakin	protein-coding
chrM.16343.-	chrM	16343	16344	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.59041958.+	chr1	59041958	59041959	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1208	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr22.46522749.-	chr22	46522749	46522750	-	0	NA	Intergenic	Intergenic	-13183	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr2.183903204.+	chr2	183903204	183903205	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	25	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr6.159416874.+	chr6	159416874	159416875	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4324	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr4.114652840.+	chr4	114652840	114652841	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30243	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr4.93787989.+	chr4	93787989	93787990	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562439	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr1.54269518.+	chr1	54269518	54269519	+	0	NA	"intron (NR_033142, intron 9 of 16)"	AluY|SINE|Alu	34707	NM_018087	55706	Hs.476525	NM_001168551	ENSG00000058804	TMEM48	NDC1|NET3	transmembrane protein 48	protein-coding
chr4.48016910.-	chr4	48016910	48016911	-	0	NA	Intergenic	AluY|SINE|Alu	1881	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr8.27695134.+	chr8	27695134	27695135	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	215	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr2.105275956.+	chr2	105275956	105275957	+	0	NA	Intergenic	Intergenic	98221	NR_038231	284998	Hs.410180	NR_038231	ENSG00000234177	LOC284998	-	uncharacterized LOC284998	miscRNA
chr22.30115901.-	chr22	30115901	30115902	-	0	NA	promoter-TSS (NM_182527)	promoter-TSS (NM_182527)	443	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
chr13.44116566.+	chr13	44116566	44116567	+	0	NA	"intron (NM_001242863, intron 2 of 16)"	AluSc8|SINE|Alu	87047	NM_001127615	55068	Hs.128258	NM_001127615	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
chr9.83479.-	chr9	83479	83480	-	0	NA	Intergenic	SVA_E|Other|Other	-34938	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr17.63480275.+	chr17	63480275	63480276	+	0	NA	Intergenic	SVA_D|Other|Other	77465	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
chr14.88199427.-	chr14	88199427	88199428	-	0	NA	Intergenic	AluSc8|SINE|Alu	-260188	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
chr1.171662950.-	chr1	171662950	171662951	-	0	NA	Intergenic	SVA_C|Other|Other	41177	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr9.86597313.+	chr9	86597313	86597314	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1676	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr16.16663369.+	chr16	16663369	16663370	+	0	NA	Intergenic	AluY|SINE|Alu	251903	NR_036447	339044	Hs.743246	XR_172152		PKD1P1	HG1	polycystic kidney disease 1 (autosomal dominant) pseudogene 1	pseudo
chr11.17160896.-	chr11	17160896	17160897	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30458	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr4.39561562.+	chr4	39561562	39561563	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32103	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr7.821298.+	chr7	821298	821299	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33896	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr6.4780642.+	chr6	4780642	4780643	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3962	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr9.139028950.-	chr9	139028950	139028951	-	0	NA	Intergenic	MIRb|SINE|MIR	18219	NM_152833	90120	Hs.287411	NM_001256526	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
chr17.61686669.-	chr17	61686669	61686670	-	0	NA	TTS (NM_016360)	TTS (NM_016360)	-8438	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
chr16.71647939.+	chr16	71647939	71647940	+	0	NA	Intergenic	AluSz|SINE|Alu	-12117	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr15.41613161.+	chr15	41613161	41613162	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11658	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr1.230561677.-	chr1	230561677	230561678	-	0	NA	promoter-TSS (NM_001258311)	promoter-TSS (NM_001258311)	3	NM_001258311	79605	Hs.520463	NM_001258311		PGBD5	-	piggyBac transposable element derived 5	protein-coding
chr11.57267116.+	chr11	57267116	57267117	+	0	NA	"intron (NM_003627, intron 5 of 14)"	CpG	15242	NM_001198810	8501	Hs.735724	NM_001198810	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	"solute carrier family 43, member 1"	protein-coding
chr11.113665997.-	chr11	113665997	113665998	-	0	NA	Intergenic	AluSx|SINE|Alu	-15479	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr1.54010034.+	chr1	54010034	54010035	+	0	NA	"intron (NM_147193, intron 3 of 9)"	"intron (NM_147193, intron 3 of 9)"	84962	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	"DMRT-like family B with proline-rich C-terminal, 1"	protein-coding
chr16.84651376.+	chr16	84651376	84651377	+	0	NA	"intron (NM_021149, intron 1 of 3)"	CpG-9574	293	NM_021149	23406	Hs.289092	NM_021149	ENSG00000103187	COTL1	CLP	coactosin-like 1 (Dictyostelium)	protein-coding
chr12.32673567.+	chr12	32673567	32673568	+	0	NA	"intron (NM_139241, intron 1 of 16)"	AluY|SINE|Alu	18526	NM_139241	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	"FYVE, RhoGEF and PH domain containing 4"	protein-coding
chr20.48807729.-	chr20	48807729	48807730	-	0	NA	"exon (NM_005194, exon 1 of 1)"	"exon (NM_005194, exon 1 of 1)"	-609	NM_005194	1051	Hs.720603	NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|CRP2|IL6DBP|LAP|NF-IL6|TCF5	"CCAAT/enhancer binding protein (C/EBP), beta"	protein-coding
chr14.51521507.+	chr14	51521507	51521508	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	40915	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr17.77810373.-	chr17	77810373	77810374	-	0	NA	"intron (NM_003655, intron 3 of 4)"	"intron (NM_003655, intron 3 of 4)"	-2840	NM_003655	8535	Hs.743401	NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
chrX.77188048.-	chrX	77188048	77188049	-	0	NA	"intron (NM_000052, intron 1 of 22)"	SVA_D|Other|Other	-21854	NM_000052	538	Hs.733232	NM_000052	ENSG00000165240	ATP7A	DSMAX|MK|MNK|SMAX3	"ATPase, Cu++ transporting, alpha polypeptide"	protein-coding
chr19.14156289.+	chr19	14156289	14156290	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13682	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr5.138944068.+	chr5	138944068	138944069	+	0	NA	"intron (NM_181838, intron 2 of 7)"	AluSx1|SINE|Alu	3317	NM_181838	7322	Hs.108332	NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
chr2.14112672.+	chr2	14112672	14112673	+	0	NA	Intergenic	AluY|SINE|Alu	-660138	NM_145175	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	"family with sequence similarity 84, member A"	protein-coding
chr12.50621234.+	chr12	50621234	50621235	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4746	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr6.16327308.+	chr6	16327308	16327309	+	0	NA	"exon (NM_000332, exon 8 of 9)"	"exon (NM_000332, exon 8 of 9)"	88497	NM_006877	2766	Hs.484741	NM_006877	ENSG00000137198	GMPR	GMPR1	guanosine monophosphate reductase	protein-coding
chr22.40087876.-	chr22	40087876	40087877	-	0	NA	Intergenic	Intergenic	-121118	NM_001003406	8911	Hs.125116	NM_001003406	ENSG00000100346	CACNA1I	Cav3.3|ca(v)3.3	"calcium channel, voltage-dependent, T type, alpha 1I subunit"	protein-coding
chr22.38598283.+	chr22	38598283	38598284	+	0	NA	promoter-TSS (NM_001161573)	promoter-TSS (NM_001161573)	344	NM_001161574	23764	Hs.517617	NM_001161572	ENSG00000185022	MAFF	U-MAF|hMafF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)	protein-coding
chr9.141038918.-	chr9	141038918	141038919	-	0	NA	Intergenic	Intergenic	5647	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr4.178730018.+	chr4	178730018	178730019	+	0	NA	"intron (NR_028342, intron 2 of 5)"	AluY|SINE|Alu	80107	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LOC285501	-	uncharacterized LOC285501	miscRNA
chr17.40316838.-	chr17	40316838	40316839	-	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	9776	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr3.128194301.+	chr3	128194301	128194302	+	0	NA	Intergenic	Intergenic	-8210	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr2.121244108.+	chr2	121244108	121244109	+	0	NA	Intergenic	Intergenic	-20183	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr9.131013023.-	chr9	131013023	131013024	-	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	5714	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr4.1626807.+	chr4	1626807	1626808	+	0	NA	Intergenic	CpG	58911	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr6.55775020.-	chr6	55775020	55775021	-	0	NA	Intergenic	SVA_D|Other|Other	34645	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr12.132628853.+	chr12	132628853	132628854	+	0	NA	promoter-TSS (NM_024078)	promoter-TSS (NM_024078)	27	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr20.4729574.+	chr20	4729574	4729575	+	0	NA	Intergenic	Intergenic	-8260	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr6.160318246.+	chr6	160318246	160318247	+	0	NA	Intergenic	LTR8|LTR|ERV1	-9728	NM_002377	4142	Hs.99900	NM_002377	ENSG00000130368	MAS1	MAS	MAS1 oncogene	protein-coding
chr2.1554623.+	chr2	1554623	1554624	+	0	NA	Intergenic	Intergenic	136443	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr2.242500459.+	chr2	242500459	242500460	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1901	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr9.131293122.+	chr9	131293122	131293123	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21715	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr14.80915362.-	chr14	80915362	80915363	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	217965	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr5.176292810.+	chr5	176292810	176292811	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33523	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr19.10041283.+	chr19	10041283	10041284	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5787	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr18.56561515.-	chr18	56561515	56561516	-	0	NA	"intron (NM_018181, intron 3 of 10)"	AluSz|SINE|Alu	-31454	NM_018181	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
chr5.1494494.+	chr5	1494494	1494495	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29582	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr6.126111987.+	chr6	126111987	126111988	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	78	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.38191068.+	chr2	38191068	38191069	+	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	13472	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr6.24720944.-	chr6	24720944	24720945	-	0	NA	Intergenic	CpG	1541	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr1.163468374.+	chr1	163468374	163468375	+	0	NA	Intergenic	SVA_A|Other|Other	176651	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr3.183052344.-	chr3	183052344	183052345	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81312	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr5.36855812.-	chr5	36855812	36855813	-	0	NA	Intergenic	AluSx|SINE|Alu	-20984	NR_046262	646719	Hs.355684	NR_046262		LOC646719	-	uncharacterized LOC646719	miscRNA
chrX.48871413.-	chrX	48871413	48871414	-	0	NA	Intergenic	AluY|SINE|Alu	12738	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr15.32298429.-	chr15	32298429	32298430	-	0	NA	Intergenic	AluY|SINE|Alu	24257	NM_000746	1139	Hs.713151	XM_003960575		CHRNA7	CHRNA7-2|NACHRA7	"cholinergic receptor, nicotinic, alpha 7 (neuronal)"	protein-coding
chr22.46394241.-	chr22	46394241	46394242	-	0	NA	Intergenic	Intergenic	8255	NR_027240	730668	Hs.640071	NR_027240		LOC730668	-	dynein heavy chain -like pseudogene	pseudo
chr2.198558477.+	chr2	198558477	198558478	+	0	NA	Intergenic	AluSp|SINE|Alu	-11551	NM_138395	92935	Hs.744330	NM_138395	ENSG00000247626	MARS2	MetRS|mtMetRS	"methionyl-tRNA synthetase 2, mitochondrial"	protein-coding
chr17.57287479.-	chr17	57287479	57287480	-	0	NA	"exon (NM_018149, exon 1 of 4)"	"exon (NM_018149, exon 1 of 4)"	-108	NM_018149	55181	Hs.7296	NM_018149	ENSG00000167447	SMG8	C17orf71	"smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)"	protein-coding
chr22.34378886.+	chr22	34378886	34378887	+	0	NA	Intergenic	AluSx1|SINE|Alu	-62470	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr1.61398369.-	chr1	61398369	61398370	-	0	NA	Intergenic	AluY|SINE|Alu	144577	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr8.117309711.+	chr8	117309711	117309712	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27586	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr3.170641492.-	chr3	170641492	170641493	-	0	NA	Intergenic	SVA_C|Other|Other	15066	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr2.173941044.-	chr2	173941044	173941045	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-479	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr3.62359295.-	chr3	62359295	62359296	-	0	NA	promoter-TSS (NM_018008)	promoter-TSS (NM_018008)	105	NM_018008	55079	Hs.241523	NM_018008	ENSG00000153266	FEZF2	FEZ|FEZL|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
chr11.113666018.-	chr11	113666018	113666019	-	0	NA	Intergenic	AluSx|SINE|Alu	-15500	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr5.22207059.+	chr5	22207059	22207060	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64598	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr11.9346789.+	chr11	9346789	9346790	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10474	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chrX.12171155.+	chrX	12171155	12171156	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14570	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chrX.153095512.-	chrX	153095512	153095513	-	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	-491	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr9.11197051.+	chr9	11197051	11197052	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584328	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.157129498.+	chr7	157129498	157129499	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-212	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr2.47661310.+	chr2	47661310	47661311	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	31104	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr16.4537805.-	chr16	4537805	4537806	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	"intron (NM_001127204, intron 2 of 6)"	8054	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr3.196325427.+	chr3	196325427	196325428	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29702	NM_001105573	200933	Hs.169815	NM_001105573	ENSG00000174013	FBXO45	Fbx45	F-box protein 45	protein-coding
chr3.24006934.+	chr3	24006934	24006935	+	0	NA	"intron (NM_001145425, intron 6 of 7)"	AluJo|SINE|Alu	19322	NM_001145425	9975	Hs.37288	NM_001145425	ENSG00000174738	NR1D2	BD73|EAR-1R|RVR	"nuclear receptor subfamily 1, group D, member 2"	protein-coding
chr1.110881127.+	chr1	110881127	110881128	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	666	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr3.154042093.-	chr3	154042093	154042094	-	0	NA	"exon (NM_001114397, exon 1 of 25)"	"exon (NM_001114397, exon 1 of 25)"	-193	NM_020865	170506	Hs.446270	NM_001114397	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding
chr2.64739158.-	chr2	64739158	64739159	-	0	NA	Intergenic	SVA_F|Other|Other	12281	NM_001002243	54812	Hs.655167	NM_001002243	ENSG00000119844	AFTPH	Nbla10388	aftiphilin	protein-coding
chr15.75701832.-	chr15	75701832	75701833	-	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	40864	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr16.4835208.+	chr16	4835208	4835209	+	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	-3190	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr4.57633193.-	chr4	57633193	57633194	-	0	NA	Intergenic	AluSc8|SINE|Alu	-54446	NR_073417	6691	Hs.98243	NM_001271718	ENSG00000128040	SPINK2	HUSI-II	"serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)"	protein-coding
chr19.2353538.+	chr19	2353538	2353539	+	0	NA	"3' UTR (NM_001077238, exon 15 of 15)"	"3' UTR (NM_001077238, exon 15 of 15)"	24909	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr6.55775072.+	chr6	55775072	55775073	+	0	NA	Intergenic	SVA_D|Other|Other	-34697	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr17.78559377.-	chr17	78559377	78559378	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40752	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr17.8252976.-	chr17	8252976	8252977	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9788	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr5.21483882.-	chr5	21483882	21483883	-	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	-24293	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr14.102109511.-	chr14	102109511	102109512	-	0	NA	Intergenic	AluY|SINE|Alu	-81823	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr19.38335691.+	chr19	38335691	38335692	+	0	NA	"intron (NR_040015, intron 2 of 5)"	AluSg|SINE|Alu	10145	NR_040015	100631378	Hs.726940	NR_040015	ENSG00000225868	LOC100631378	-	uncharacterized 100631378	miscRNA
chr19.14095938.-	chr19	14095938	14095939	-	0	NA	"intron (NM_002918, intron 2 of 20)"	AluSz6|SINE|Alu	-21196	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chr17.21825572.+	chr17	21825572	21825573	+	0	NA	"non-coding (NR_028336, exon 1 of 2)"	"non-coding (NR_028336, exon 1 of 2)"	202	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr1.155052922.-	chr1	155052922	155052923	-	0	NA	"intron (NM_004952, intron 1 of 4)"	CpG	-1574	NM_004952	1944	Hs.516656	NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin-A3	protein-coding
chr14.75593486.+	chr14	75593486	75593487	+	0	NA	"exon (NM_033116, exon 1 of 22)"	"exon (NM_033116, exon 1 of 22)"	292	NM_033116	91754	Hs.7200	NM_033116	ENSG00000119638	NEK9	NERCC|NERCC1|Nek8	NIMA-related kinase 9	protein-coding
chr9.38068909.+	chr9	38068909	38068910	+	0	NA	"5' UTR (NM_003028, exon 1 of 6)"	"5' UTR (NM_003028, exon 1 of 6)"	301	NM_003028	6461	Hs.521482	NM_003028		SHB	RP11-3J10.8|bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
chr6.167607683.-	chr6	167607683	167607684	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23602	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr2.183903201.+	chr2	183903201	183903202	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	28	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr19.13961375.-	chr19	13961375	13961376	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	13902	NR_029495	407010		NR_029495	ENSG00000207980	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A	microRNA 23a	miscRNA
chr10.120537000.+	chr10	120537000	120537001	+	0	NA	Intergenic	AluSx1|SINE|Alu	-22242	NM_153810	143384	Hs.420024	NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	"CDK2-associated, cullin domain 1"	protein-coding
chr3.46792328.+	chr3	46792328	46792329	+	0	NA	Intergenic	CpG	-6083	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chrX.47441881.-	chrX	47441881	47441882	-	0	NA	"intron (NM_003254, intron 1 of 5)"	"intron (NM_003254, intron 1 of 5)"	-191	NM_003254	7076	Hs.522632	NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP	TIMP metallopeptidase inhibitor 1	protein-coding
chr8.23131073.+	chr8	23131073	23131074	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14539	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr19.56749051.-	chr19	56749051	56749052	-	0	NA	Intergenic	AluJb|SINE|Alu	9392	NM_024303	79149	Hs.177688	NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
chr22.18193159.-	chr22	18193159	18193160	-	0	NA	"intron (NM_001270733, intron 1 of 1)"	AluSz|SINE|Alu	-3735	NM_001270733	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr18.63211115.-	chr18	63211115	63211116	-	0	NA	Intergenic	AluY|SINE|Alu	206373	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr22.46522757.+	chr22	46522757	46522758	+	0	NA	Intergenic	Intergenic	13191	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr19.4065799.-	chr19	4065799	4065800	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1017	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr2.241622521.-	chr2	241622521	241622522	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	204	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr22.25507612.+	chr22	25507612	25507613	+	0	NA	"intron (NR_038941, intron 2 of 4)"	"intron (NR_038941, intron 2 of 4)"	1047	NR_038941	100128531	Hs.662126	NR_038941	ENSG00000203280	LOC100128531	-	uncharacterized LOC100128531	miscRNA
chrX.42144955.-	chrX	42144955	42144956	-	0	NA	Intergenic	SVA_D|Other|Other	362668	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr1.178011452.+	chr1	178011452	178011453	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4310	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr15.41613494.-	chr15	41613494	41613495	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11325	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr2.149395131.+	chr2	149395131	149395132	+	0	NA	Intergenic	AluY|SINE|Alu	-7429	NM_015630	26122	Hs.23270	NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chr10.35374591.-	chr10	35374591	35374592	-	0	NA	"intron (NM_001198777, intron 1 of 20)"	AluY|SINE|Alu	-4720	NM_003591	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr12.31575352.-	chr12	31575352	31575353	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96193	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr16.634249.+	chr16	634249	634250	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-5108	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr1.197234023.-	chr1	197234023	197234024	-	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	3311	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr15.31566359.-	chr15	31566359	31566360	-	0	NA	Intergenic	AluY|SINE|Alu	43309	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chrX.93693179.+	chrX	93693179	93693180	+	0	NA	Intergenic	AluY|SINE|Alu	764167	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chr21.32687756.-	chr21	32687756	32687757	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243534	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr21.47980779.+	chr21	47980779	47980780	+	0	NA	"intron (NM_001146116, intron 33 of 37)"	"intron (NM_001146116, intron 33 of 37)"	44256	NM_006272	6285	Hs.422181	NM_006272		S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
chr7.5322930.+	chr7	5322930	5322931	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	369	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr8.107670098.-	chr8	107670098	107670099	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-62	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr16.4051419.-	chr16	4051419	4051420	-	0	NA	"intron (NM_001116, intron 3 of 10)"	L1MD3|LINE|L1	-114767	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr2.29052549.+	chr2	29052549	29052550	+	0	NA	"intron (NM_001008779, intron 4 of 4)"	AluY|SINE|Alu	13686	NM_001008779	245711	Hs.511956	NM_001008779	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy homolog A (Xenopus laevis)	protein-coding
chr8.128328699.-	chr8	128328699	128328700	-	0	NA	Intergenic	Intergenic	99158	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr3.133292595.+	chr3	133292595	133292596	+	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	161	NM_017548	55573	Hs.518265	NM_001134422	ENSG00000091527	CDV3	H41	CDV3 homolog (mouse)	protein-coding
chr15.76627321.-	chr15	76627321	76627322	-	0	NA	Intergenic	AluSg|SINE|Alu	1826	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr17.48422575.+	chr17	48422575	48422576	+	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	-818	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr2.105867565.+	chr2	105867565	105867566	+	0	NA	Intergenic	SVA_D|Other|Other	9365	NM_007227	11250	Hs.590903	NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
chr7.5322972.-	chr7	5322972	5322973	-	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	-411	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr7.128141945.+	chr7	128141945	128141946	+	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	25162	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr8.14882338.-	chr8	14882338	14882339	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171319	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr5.172522292.-	chr5	172522292	172522293	-	0	NA	"intron (NM_153607, intron 4 of 8)"	AluY|SINE|Alu	-38937	NM_153607	153222	Hs.484195	NM_001168393	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
chr20.13660641.-	chr20	13660641	13660642	-	0	NA	Intergenic	AluY|SINE|Alu	41058	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr1.109995473.+	chr1	109995473	109995474	+	0	NA	Intergenic	AluY|SINE|Alu	-13627	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr17.4697285.-	chr17	4697285	4697286	-	0	NA	Intergenic	AluY|SINE|Alu	2154	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr19.5237903.+	chr19	5237903	5237904	+	0	NA	"intron (NM_130854, intron 10 of 32)"	"intron (NM_130854, intron 10 of 32)"	102911	NM_002850	5802	Hs.644384	NM_002850	ENSG00000105426	PTPRS	PTPSIGMA	"protein tyrosine phosphatase, receptor type, S"	protein-coding
chr13.66584761.-	chr13	66584761	66584762	-	0	NA	Intergenic	AluY|SINE|Alu	814540	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr9.90884994.+	chr9	90884994	90884995	+	0	NA	Intergenic	AluY|SINE|Alu	-118303	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr16.31932474.+	chr16	31932474	31932475	+	0	NA	Intergenic	AluY|SINE|Alu	47395	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr14.103988583.-	chr14	103988583	103988584	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-613	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr2.38595068.-	chr2	38595068	38595069	-	0	NA	"intron (NM_022374, intron 1 of 12)"	AluSq2|SINE|Alu	-9364	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr19.34248220.-	chr19	34248220	34248221	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39531	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr14.78092558.+	chr14	78092558	78092559	+	0	NA	Intergenic	AluY|SINE|Alu	-9448	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	"serine palmitoyltransferase, long chain base subunit 2"	protein-coding
chr17.40576533.-	chr17	40576533	40576534	-	0	NA	Intergenic	AluSx|SINE|Alu	1195	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
chrX.53123351.-	chrX	53123351	53123352	-	0	NA	Intergenic	CpG	-11809	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.220909476.+	chr1	220909476	220909477	+	0	NA	Intergenic	AluSc|SINE|Alu	-12200	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr17.1006533.-	chr17	1006533	1006534	-	0	NA	"intron (NM_001159746, intron 2 of 22)"	"intron (NM_001159746, intron 2 of 22)"	-5807	NM_001092	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr7.56109480.-	chr7	56109480	56109481	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9788	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr5.140581425.+	chr5	140581425	140581426	+	0	NA	"exon (NM_018931, exon 1 of 1)"	"exon (NM_018931, exon 1 of 1)"	2077	NM_018931	56125	Hs.283084	NM_018931	ENSG00000197479	PCDHB11	ME2|PCDH-BETA11	protocadherin beta 11	protein-coding
chr16.1807918.+	chr16	1807918	1807919	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13792	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr18.46969463.+	chr18	46969463	46969464	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17616	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr17.18785152.-	chr17	18785152	18785153	-	0	NA	"intron (NM_002767, intron 6 of 11)"	"intron (NM_002767, intron 6 of 11)"	-16370	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr9.6559778.+	chr9	6559778	6559779	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85914	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr20.34458196.+	chr20	34458196	34458197	+	0	NA	"intron (NM_016436, intron 7 of 17)"	AluY|SINE|Alu	84352	NM_033630	51282	Hs.584909	NM_016558		SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
chr19.49061664.-	chr19	49061664	49061665	-	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	-6235	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr19.13741898.-	chr19	13741898	13741899	-	0	NA	Intergenic	AluSc8|SINE|Alu	116855	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr11.66676675.+	chr11	66676675	66676676	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1335	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr7.82072948.-	chr7	82072948	82072949	-	0	NA	promoter-TSS (NM_000722)	promoter-TSS (NM_000722)	-83	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A	"calcium channel, voltage-dependent, alpha 2/delta subunit 1"	protein-coding
chr1.188418085.+	chr1	188418085	188418086	+	0	NA	Intergenic	AluY|SINE|Alu	1620053	NM_024420	5321	Hs.497200	NM_024420	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2-alpha	"phospholipase A2, group IVA (cytosolic, calcium-dependent)"	protein-coding
chr16.81206619.-	chr16	81206619	81206620	-	0	NA	"intron (NM_001076780, intron 16 of 17)"	LTR33|LTR|ERVL	-47356	NM_001076780	114780	Hs.413525	NM_001076780	ENSG00000166473	PKD1L2	PC1L2	polycystic kidney disease 1-like 2	protein-coding
chr16.3070190.+	chr16	3070190	3070191	+	0	NA	promoter-TSS (NM_016639)	promoter-TSS (NM_016639)	-123	NM_016639	51330	Hs.355899	NM_016639	ENSG00000006327	TNFRSF12A	CD266|FN14|TWEAKR	"tumor necrosis factor receptor superfamily, member 12A"	protein-coding
chr3.45472169.-	chr3	45472169	45472170	-	0	NA	"intron (NM_015340, intron 6 of 21)"	AluY|SINE|Alu	-42094	NM_015340	23395	Hs.526975	NM_015340	ENSG00000011376	LARS2	LEURS	"leucyl-tRNA synthetase 2, mitochondrial"	protein-coding
chr8.144246913.+	chr8	144246913	144246914	+	0	NA	Intergenic	AluY|SINE|Alu	-4860	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr14.104339750.-	chr14	104339750	104339751	-	0	NA	Intergenic	AluSz|SINE|Alu	-25692	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr19.58879808.+	chr19	58879808	58879809	+	0	NA	"non-coding (NR_049780, exon 3 of 3)"	"non-coding (NR_049780, exon 3 of 3)"	-5594	NM_198458	162968	Hs.743423	NM_001207009	ENSG00000174586	ZNF497	-	zinc finger protein 497	protein-coding
chr3.46792411.+	chr3	46792411	46792412	+	0	NA	Intergenic	CpG	-6166	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr19.42502222.+	chr19	42502222	42502223	+	0	NA	TTS (NM_002088)	TTS (NM_002088)	-3794	NM_152296	478	Hs.515427	NM_001256213	ENSG00000105409	ATP1A3	AHC2|DYT12|RDP	"ATPase, Na+/K+ transporting, alpha 3 polypeptide"	protein-coding
chr20.31565624.+	chr20	31565624	31565625	+	0	NA	Intergenic	Intergenic	26615	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr1.248394288.-	chr1	248394288	248394289	-	0	NA	Intergenic	AluSc8|SINE|Alu	7943	NM_017504	26245	Hs.381309	NM_017504	ENSG00000171180	OR2M4	HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100	"olfactory receptor, family 2, subfamily M, member 4"	protein-coding
chrY.9930616.-	chrY	9930616	9930617	-	0	NA	Intergenic	CpG	-182209	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr6.170055449.-	chr6	170055449	170055450	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46710	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr16.30207005.+	chr16	30207005	30207006	+	0	NA	"intron (NM_001014999, intron 3 of 5).2"	AluY|SINE|Alu	1251	NR_037608	100526830	Hs.741198	NR_037608		SLX1A-SULT1A3	-	SLX1A-SULT1A3 readthrough (non-protein coding)	miscRNA
chr6.126100288.-	chr6	126100288	126100289	-	0	NA	Intergenic	AluY|SINE|Alu	2019	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr16.3203711.+	chr16	3203711	3203712	+	0	NA	Intergenic	AluSg|SINE|Alu	18577	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr2.71357865.+	chr2	71357865	71357866	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	421	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr18.51750892.-	chr18	51750892	51750893	-	0	NA	"exon (NM_003927, exon 1 of 7)"	"exon (NM_003927, exon 1 of 7)"	-266	NM_003927	8932	Hs.25674	NM_003927	ENSG00000134046	MBD2	DMTase|NY-CO-41	methyl-CpG binding domain protein 2	protein-coding
chr20.5213530.-	chr20	5213530	5213531	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81485	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr6.82952687.-	chr6	82952687	82952688	-	0	NA	"intron (NM_015525, intron 1 of 28)"	AluY|SINE|Alu	-4761	NM_015525	25998	Hs.306425	NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI|RP1-93K22.1	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
chr3.129358114.-	chr3	129358114	129358115	-	0	NA	Intergenic	AluSz|SINE|Alu	32532	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
chr12.6109779.-	chr12	6109779	6109780	-	0	NA	"intron (NM_000552, intron 34 of 51)"	AluY|SINE|Alu	54381	NM_020373	57101	Hs.148970	NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
chr10.112860889.+	chr10	112860889	112860890	+	0	NA	Intergenic	MIRc|SINE|MIR	24099	NM_000681	150	Hs.249159	NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
chr2.128432612.-	chr2	128432612	128432613	-	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	-152	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr14.105134375.+	chr14	105134375	105134376	+	0	NA	Intergenic	AluSz|SINE|Alu	9711	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr10.90778654.-	chr10	90778654	90778655	-	0	NA	Intergenic	LTR12C|LTR|ERV1	25922	NR_028371	100302740	Hs.244139	NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	miscRNA
chr7.73915660.+	chr7	73915660	73915661	+	0	NA	"intron (NM_016328, intron 1 of 26)"	"intron (NM_016328, intron 1 of 26)"	47540	NM_001199207	9569	Hs.647056	NM_001199207	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
chr6.34770174.-	chr6	34770174	34770175	-	0	NA	"intron (NM_017754, intron 1 of 20)"	AluSx1|SINE|Alu	-10380	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr12.132116749.-	chr12	132116749	132116750	-	0	NA	Intergenic	L1ME1|LINE|L1	78883	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr5.25535465.-	chr5	25535465	25535466	-	0	NA	Intergenic	AluY|SINE|Alu	694773	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr14.33547104.+	chr14	33547104	33547105	+	0	NA	"intron (NM_001164749, intron 2 of 11)"	AluSx|SINE|Alu	138645	NM_173159	64067	Hs.675475	NM_001164749	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
chr5.28928063.-	chr5	28928063	28928064	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1086	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr11.35684664.-	chr11	35684664	35684665	-	0	NA	"exon (NM_017583, exon 1 of 5)"	"exon (NM_017583, exon 1 of 5)"	-311	NM_017583	54765	Hs.192103	NM_017583		TRIM44	DIPB|HSA249128|MC7	tripartite motif containing 44	protein-coding
chr10.134583311.+	chr10	134583311	134583312	+	0	NA	"intron (NM_005539, intron 12 of 15)"	"intron (NM_005539, intron 12 of 15)"	16226	NM_177400	84504	Hs.134013	NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
chr5.1466256.-	chr5	1466256	1466257	-	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	20713	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr16.375217.+	chr16	375217	375218	+	0	NA	"intron (NM_003502, intron 2 of 10)"	CpG	27459	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr9.139513549.-	chr9	139513549	139513550	-	0	NA	Intergenic	Intergenic	39759	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr2.91874377.+	chr2	91874377	91874378	+	0	NA	Intergenic	CpG	-26402	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr12.127898791.+	chr12	127898791	127898792	+	0	NA	Intergenic	Intergenic	-467371	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr7.36845286.-	chr7	36845286	36845287	-	0	NA	Intergenic	AluJb|SINE|Alu	81132	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chrX.21676544.-	chrX	21676544	21676545	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	96	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr1.224601843.-	chr1	224601843	224601844	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15830	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr14.102101587.+	chr14	102101587	102101588	+	0	NA	Intergenic	CpG	73899	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr16.77246819.+	chr16	77246819	77246820	+	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	13470	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr1.97228886.+	chr1	97228886	97228887	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41711	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr2.198259367.+	chr2	198259367	198259368	+	0	NA	"intron (NM_012433, intron 23 of 24)"	AluSc8|SINE|Alu	40404	NM_001005526	23451	Hs.632554	NM_001005526	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	"splicing factor 3b, subunit 1, 155kDa"	protein-coding
chr10.22420137.+	chr10	22420137	22420138	+	0	NA	Intergenic	L1PA7|LINE|L1	78775	NM_001199938	340900	Hs.450519	NM_001199938		EBLN1	EBLN-1	endogenous Bornavirus-like nucleoprotein 1	protein-coding
chr22.27947662.+	chr22	27947662	27947663	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	249824	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
chr4.114652886.+	chr4	114652886	114652887	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30197	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr21.9827484.+	chr21	9827484	9827485	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	1281	NR_037458	100500815		NR_037458	ENSG00000264063	MIR3687	-	microRNA 3687	miscRNA
chr12.133137125.-	chr12	133137125	133137126	-	0	NA	"intron (NM_001142641, intron 5 of 16)"	CpG	-49912	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr5.1770160.-	chr5	1770160	1770161	-	0	NA	Intergenic	L1MB5|LINE|L1	-29796	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr7.72991447.+	chr7	72991447	72991448	+	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	1566	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr1.110881142.-	chr1	110881142	110881143	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-651	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr7.150812749.-	chr7	150812749	150812750	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28923	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr22.46303256.-	chr22	46303256	46303257	-	0	NA	Intergenic	Intergenic	-69752	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chrX.81762791.+	chrX	81762791	81762792	+	0	NA	Intergenic	AluY|SINE|Alu	-1000478	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr22.34377453.-	chr22	34377453	34377454	-	0	NA	Intergenic	AluY|SINE|Alu	61037	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr7.1156296.+	chr7	1156296	1156297	+	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	21597	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chr2.114361268.-	chr2	114361268	114361269	-	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	-26	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr7.101571981.+	chr7	101571981	101571982	+	0	NA	"intron (NM_001202544, intron 2 of 21)"	AluYa5|SINE|Alu	111099	NM_181552	1523	Hs.191482	NM_001202543	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
chr20.62479319.+	chr20	62479319	62479320	+	0	NA	Intergenic	Intergenic	-13247	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr1.37546478.+	chr1	37546478	37546479	+	0	NA	Intergenic	SVA_D|Other|Other	-46634	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr2.122878835.-	chr2	122878835	122878836	-	0	NA	Intergenic	AluY|SINE|Alu	-365714	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr18.60740382.+	chr18	60740382	60740383	+	0	NA	Intergenic	AluYb8|SINE|Alu	246231	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr17.78397558.-	chr17	78397558	78397559	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4340	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr7.3119912.-	chr7	3119912	3119913	-	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	36403	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr10.135008718.-	chr10	135008718	135008719	-	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	-34747	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr17.7011293.-	chr17	7011293	7011294	-	0	NA	"intron (NM_001201352, intron 4 of 8)"	"intron (NM_001201352, intron 4 of 8)"	-6336	NM_080914	433	Hs.654440	NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
chr3.183034700.+	chr3	183034700	183034701	+	0	NA	"intron (NM_015078, intron 7 of 29)"	AluSx1|SINE|Alu	63668	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr2.207036896.-	chr2	207036896	207036897	-	0	NA	Intergenic	SVA_D|Other|Other	-9944	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr12.132623246.+	chr12	132623246	132623247	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5634	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr3.48742519.+	chr3	48742519	48742520	+	0	NA	"intron (NM_001005910, intron 1 of 2)"	AluY|SINE|Alu	12192	NM_001146179	51447	Hs.595983	NM_001005909	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
chr17.66192389.+	chr17	66192389	66192390	+	0	NA	Intergenic	CpG	-2412	NR_027283	440461	Hs.661522	NR_027283		LOC440461	-	Rho GTPase activating protein 27 pseudogene	pseudo
chr7.609820.+	chr7	609820	609821	+	0	NA	"intron (NM_002735, intron 9 of 10)"	"intron (NM_002735, intron 9 of 10)"	49792	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr19.16869715.-	chr19	16869715	16869716	-	0	NA	"intron (NM_001007525, intron 6 of 18)"	AluSg|SINE|Alu	-38928	NM_001007525	284434	Hs.406014	NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
chr11.915975.+	chr11	915975	915976	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-917	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr1.119527191.+	chr1	119527191	119527192	+	0	NA	"intron (NM_152380, intron 1 of 7)"	CpG	4988	NM_152380	6913	Hs.146196	NM_152380	ENSG00000092607	TBX15	TBX14	T-box 15	protein-coding
chr1.1121073.-	chr1	1121073	1121074	-	0	NA	"3' UTR (NM_153254, exon 9 of 9)"	"3' UTR (NM_153254, exon 9 of 9)"	-5996	NM_153254	254173	Hs.454835	NM_001130045	ENSG00000162571	TTLL10	TTLL5	"tubulin tyrosine ligase-like family, member 10"	protein-coding
chr7.5574555.+	chr7	5574555	5574556	+	0	NA	Intergenic	AluJb|SINE|Alu	-4323	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr16.1959156.+	chr16	1959156	1959157	+	0	NA	Intergenic	Intergenic	9075	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr11.3224483.+	chr11	3224483	3224484	+	0	NA	Intergenic	Intergenic	-15079	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chrX.42939919.+	chrX	42939919	42939920	+	0	NA	Intergenic	AluSx|SINE|Alu	-302433	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr3.53225256.+	chr3	53225256	53225257	+	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	30033	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr16.89724842.+	chr16	89724842	89724843	+	0	NA	promoter-TSS (NM_001083314)	promoter-TSS (NM_001083314)	387	NR_073516	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr14.34924178.+	chr14	34924178	34924179	+	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	7290	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr2.232277197.-	chr2	232277197	232277198	-	0	NA	Intergenic	Intergenic	-16862	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr7.5355885.-	chr7	5355885	5355886	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33324	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr1.22632439.+	chr1	22632439	22632440	+	0	NA	Intergenic	AluY|SINE|Alu	-145905	NM_014870	9923	Hs.418966	NM_001083621	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
chr1.10727948.+	chr1	10727948	10727949	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128785	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chrX.90738086.-	chrX	90738086	90738087	-	0	NA	Intergenic	AluSz|SINE|Alu	-48489	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr8.22594711.-	chr8	22594711	22594712	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43896	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr9.1045394.+	chr9	1045394	1045395	+	0	NA	Intergenic	AluY|SINE|Alu	-4952	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr15.26660412.+	chr15	26660412	26660413	+	0	NA	Intergenic	AluSc8|SINE|Alu	213825	NM_001191321	2562	Hs.302352	NM_000814	ENSG00000166206	GABRB3	ECA5	"gamma-aminobutyric acid (GABA) A receptor, beta 3"	protein-coding
chr16.181499.-	chr16	181499	181500	-	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluSx|SINE|Alu	-7198	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr8.107670088.-	chr8	107670088	107670089	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-52	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr8.11312289.+	chr8	11312289	11312290	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11987	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr12.131530312.-	chr12	131530312	131530313	-	0	NA	"intron (NM_198827, intron 13 of 24)"	"intron (NM_198827, intron 13 of 24)"	-91860	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr7.286596.+	chr7	286596	286597	+	0	NA	"intron (NM_020223, intron 4 of 9)"	"intron (NM_020223, intron 4 of 9)"	-43540	NM_001195127	100288524	Hs.702860	NM_001195127		LOC100288524	-	forkhead box L1-like	protein-coding
chr18.8610144.-	chr18	8610144	8610145	-	0	NA	"intron (NM_001025300, intron 1 of 5)"	CpG	-701	NM_001025300	201475	Hs.270074	NM_001025300	ENSG00000206418	RAB12	-	"RAB12, member RAS oncogene family"	protein-coding
chr10.64708099.-	chr10	64708099	64708100	-	0	NA	Intergenic	SVA_E|Other|Other	129172	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr6.65337795.+	chr6	65337795	65337796	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673516	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr1.7302936.-	chr1	7302936	7302937	-	0	NA	"intron (NM_015215, intron 4 of 22)"	AluY|SINE|Alu	-457552	NR_038934	23261	Hs.671020	NM_001195563		CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
chr11.1785090.-	chr11	1785090	1785091	-	0	NA	"5' UTR (NM_001909, exon 1 of 9)"	"5' UTR (NM_001909, exon 1 of 9)"	-132	NM_001909	1509	Hs.654447	NM_001909	ENSG00000117984	CTSD	CLN10|CPSD	cathepsin D	protein-coding
chr3.22099274.-	chr3	22099274	22099275	-	0	NA	Intergenic	AluSx|SINE|Alu	306458	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr3.102973930.+	chr3	102973930	102973931	+	0	NA	Intergenic	SVA_D|Other|Other	820071	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr12.7250601.-	chr12	7250601	7250602	-	0	NA	"intron (NM_016546, intron 5 of 5)"	AluY|SINE|Alu	5558	NM_001733	715	Hs.524224	NM_001733		C1R	-	"complement component 1, r subcomponent"	protein-coding
chr2.113642126.+	chr2	113642126	113642127	+	0	NA	Intergenic	AluJb|SINE|Alu	-28422	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr13.110551485.-	chr13	110551485	110551486	-	0	NA	Intergenic	AluSx|SINE|Alu	112571	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr22.39040961.+	chr22	39040961	39040962	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11673	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr2.121244105.+	chr2	121244105	121244106	+	0	NA	Intergenic	Intergenic	-20180	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr12.122667618.+	chr12	122667618	122667619	+	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	-49	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr19.15718046.-	chr19	15718046	15718047	-	0	NA	Intergenic	AluY|SINE|Alu	7983	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr1.119532170.-	chr1	119532170	119532171	-	0	NA	promoter-TSS (NM_152380)	promoter-TSS (NM_152380)	-9	NM_152380	6913	Hs.146196	NM_152380	ENSG00000092607	TBX15	TBX14	T-box 15	protein-coding
chr16.22248662.+	chr16	22248662	22248663	+	0	NA	"intron (NM_013302, intron 2 of 17)"	MIR3|SINE|MIR	31070	NM_013302	29904	Hs.498892	NM_013302		EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding
chr3.8721281.-	chr3	8721281	8721282	-	0	NA	Intergenic	Intergenic	27517	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr5.1137812.+	chr5	1137812	1137813	+	0	NA	Intergenic	Intergenic	-25640	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr2.70416483.+	chr2	70416483	70416484	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	1668	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr2.10405990.-	chr2	10405990	10405991	-	0	NA	Intergenic	Intergenic	37040	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr19.38836206.-	chr19	38836206	38836207	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9763	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr16.89939796.-	chr16	89939796	89939797	-	0	NA	promoter-TSS (NM_014972)	promoter-TSS (NM_014972)	198	NM_014972	22980	Hs.415342	NM_014972	ENSG00000141002	TCF25	Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding
chr6.89378031.-	chr6	89378031	89378032	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295317	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr9.133771883.-	chr9	133771883	133771884	-	0	NA	Intergenic	Intergenic	2658	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chrX.15372374.-	chrX	15372374	15372375	-	0	NA	"intron (NR_037859, intron 12 of 14)"	AluY|SINE|Alu	18698	NR_033836	5277	Hs.137154	NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|PIG-A	"phosphatidylinositol glycan anchor biosynthesis, class A"	protein-coding
chr21.43198314.+	chr21	43198314	43198315	+	0	NA	Intergenic	Intergenic	-11065	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr9.6807793.-	chr9	6807793	6807794	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50152	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chrM.797.+	chrM	797	798	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.1228091.+	chr16	1228091	1228092	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24850	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr5.91967018.-	chr5	91967018	91967019	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-939481	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr2.1166198.-	chr2	1166198	1166199	-	0	NA	"intron (NM_018968, intron 7 of 16)"	"intron (NM_018968, intron 7 of 16)"	-219644	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr1.80177657.-	chr1	80177657	80177658	-	0	NA	Intergenic	AluSx|SINE|Alu	705162	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr5.129240389.+	chr5	129240389	129240390	+	0	NA	promoter-TSS (NM_175856)	promoter-TSS (NM_175856)	-134	NM_175856	337876	Hs.213137	NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
chr11.45102429.+	chr11	45102429	45102430	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-13135	NR_046338	56981	Hs.178715	NM_001256695	ENSG00000019485	PRDM11	PFM8	PR domain containing 11	protein-coding
chr12.122667598.-	chr12	122667598	122667599	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	69	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr9.11197022.+	chr9	11197022	11197023	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584299	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.48622463.-	chr2	48622463	48622464	-	0	NA	Intergenic	AluSp|SINE|Alu	45445	NM_001135629	129285	Hs.654619	NM_001135630	ENSG00000162869	PPP1R21	CCDC128|KLRAQ1	"protein phosphatase 1, regulatory subunit 21"	protein-coding
chr3.14349516.+	chr3	14349516	14349517	+	0	NA	Intergenic	Intergenic	-94590	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr12.132372590.-	chr12	132372590	132372591	-	0	NA	Intergenic	AluSx|SINE|Alu	6689	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr16.17617332.+	chr16	17617332	17617333	+	0	NA	Intergenic	AluSz|SINE|Alu	-52594	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr9.140715922.-	chr9	140715922	140715923	-	0	NA	"intron (NM_024757, intron 25 of 26)"	AluJr|SINE|Alu	16949	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	miscRNA
chr2.220430167.+	chr2	220430167	220430168	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6101	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr12.34492660.+	chr12	34492660	34492661	+	0	NA	Intergenic	GSATII|Satellite|centr	317444	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr13.56400601.+	chr13	56400601	56400602	+	0	NA	Intergenic	AluY|SINE|Alu	652012	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr11.119986309.-	chr11	119986309	119986310	-	0	NA	"intron (NM_012101, intron 7 of 8)"	"intron (NM_012101, intron 7 of 8)"	-22554	NM_012101	23650	Hs.504115	NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
chr2.197504454.+	chr2	197504454	197504455	+	0	NA	promoter-TSS (NM_001080539)	promoter-TSS (NM_001080539)	98	NM_001080539	284992	Hs.132519	NM_001080539	ENSG00000144395	CCDC150	-	coiled-coil domain containing 150	protein-coding
chrX.144902905.-	chrX	144902905	144902906	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-39	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr12.34501193.-	chr12	34501193	34501194	-	0	NA	Intergenic	GSATII|Satellite|centr	-325977	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.217746903.+	chr2	217746903	217746904	+	0	NA	Intergenic	AluSz|SINE|Alu	-22121	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr22.38498800.-	chr22	38498800	38498801	-	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	-7876	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr9.131128886.-	chr9	131128886	131128887	-	0	NA	Intergenic	AluY|SINE|Alu	4712	NM_030914	81605	Hs.495229	NM_001135947		URM1	C9orf74	ubiquitin related modifier 1	protein-coding
chrX.97253614.-	chrX	97253614	97253615	-	0	NA	Intergenic	AluY|SINE|Alu	-1114707	NM_013347	29935	Hs.659349	NM_013347	ENSG00000204086	RPA4	HSU24186	"replication protein A4, 30kDa"	protein-coding
chr21.47838735.-	chr21	47838735	47838736	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40127	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr9.425358.-	chr9	425358	425359	-	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	44936	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr2.223468837.-	chr2	223468837	223468838	-	0	NA	"intron (NM_005687, intron 15 of 16)"	AluY|SINE|Alu	-51990	NM_005687	10056	Hs.471452	NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|PheHB|PheRS	"phenylalanyl-tRNA synthetase, beta subunit"	protein-coding
chr13.45945065.+	chr13	45945065	45945066	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29585	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr17.8621724.-	chr17	8621724	8621725	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-26430	NM_144681	146849	Hs.121438	NM_001158261	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
chr19.52526255.-	chr19	52526255	52526256	-	0	NA	"intron (NM_025040, intron 2 of 4)"	AluY|SINE|Alu	-5425	NM_025040	80110	Hs.292336	NM_025040	ENSG00000142556	ZNF614	-	zinc finger protein 614	protein-coding
chr10.133955386.+	chr10	133955386	133955387	+	0	NA	"intron (NM_001105521, intron 9 of 23)"	"intron (NM_001105521, intron 9 of 23)"	37073	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr14.23517077.-	chr14	23517077	23517078	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5701	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr21.43699095.+	chr21	43699095	43699096	+	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	36611	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr7.5322932.+	chr7	5322932	5322933	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	371	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr3.174851039.-	chr3	174851039	174851040	-	0	NA	"intron (NM_207015, intron 2 of 13)"	SVA_D|Other|Other	18007	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	miscRNA
chr8.28669084.-	chr8	28669084	28669085	-	0	NA	"intron (NR_026826, intron 6 of 14)"	AluJb|SINE|Alu	-78348	NM_001172562	55756	Hs.162397	NM_001145159	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
chr12.112407454.+	chr12	112407454	112407455	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43569	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr1.183257552.-	chr1	183257552	183257553	-	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	-16457	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr16.4537735.-	chr16	4537735	4537736	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8124	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr13.50701761.+	chr13	50701761	50701762	+	0	NA	Intergenic	CpG-6444	-2084	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr6.134540772.+	chr6	134540772	134540773	+	0	NA	"intron (NM_001143676, intron 2 of 13)"	AluSp|SINE|Alu	-41762	NM_001143677	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr6.169648536.+	chr6	169648536	169648537	+	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	5601	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr8.95668739.-	chr8	95668739	95668740	-	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	-15375	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr12.109637558.+	chr12	109637558	109637559	+	0	NA	"intron (NM_001093, intron 17 of 51)"	AluY|SINE|Alu	60356	NM_001093	32	Hs.234898	NM_001093	ENSG00000076555	ACACB	ACC2|ACCB|HACC275	acetyl-CoA carboxylase beta	protein-coding
chr10.83634588.-	chr10	83634588	83634589	-	0	NA	promoter-TSS (NM_001165972)	promoter-TSS (NM_001165972)	482	NM_001165972	10718	Hs.125119	NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
chr13.47509469.+	chr13	47509469	47509470	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-38258	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr8.3501051.+	chr8	3501051	3501052	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351277	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr16.70144509.+	chr16	70144509	70144510	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3020	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr9.6807788.-	chr9	6807788	6807789	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50147	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr19.53979633.-	chr19	53979633	53979634	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8644	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr7.155834302.+	chr7	155834302	155834303	+	0	NA	Intergenic	Intergenic	-229335	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr7.70194297.-	chr7	70194297	70194298	-	0	NA	"intron (NM_015570, intron 6 of 18)"	"intron (NM_015570, intron 6 of 18)"	403226	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr16.8974143.-	chr16	8974143	8974144	-	0	NA	Intergenic	Intergenic	11280	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr7.975086.-	chr7	975086	975087	-	0	NA	"exon (NM_006869, exon 2 of 11)"	"exon (NM_006869, exon 2 of 11)"	-19203	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr5.42636038.-	chr5	42636038	42636039	-	0	NA	"intron (NM_001242400, intron 4 of 10)"	AluY|SINE|Alu	-70072	NM_001242462	2690	Hs.688223	NM_000163	ENSG00000112964	GHR	GHBP	growth hormone receptor	protein-coding
chr12.120959426.-	chr12	120959426	120959427	-	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	-7538	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr11.45810313.+	chr11	45810313	45810314	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15310	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr1.1136641.+	chr1	1136641	1136642	+	0	NA	Intergenic	CpG	5448	NM_004195	8784	Hs.212680	NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|GITR|GITR-D	"tumor necrosis factor receptor superfamily, member 18"	protein-coding
chr11.1910628.+	chr11	1910628	1910629	+	0	NA	"intron (NM_001013254, intron 10 of 10)"	"intron (NM_001013254, intron 10 of 10)"	18474	NM_001013255	4046	Hs.56729	NM_001013253	ENSG00000130592	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
chr2.55647002.+	chr2	55647002	55647003	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	55	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr7.130418518.-	chr7	130418518	130418519	-	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	-370	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr19.9311343.+	chr19	9311343	9311344	+	0	NA	Intergenic	AluSc8|SINE|Alu	14204	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr12.133328250.-	chr12	133328250	133328251	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10201	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr1.6132087.+	chr1	6132087	6132088	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25913	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr4.163164025.-	chr4	163164025	163164026	-	0	NA	Intergenic	AluY|SINE|Alu	78839	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr1.9832308.-	chr1	9832308	9832309	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52242	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr19.35644874.-	chr19	35644874	35644875	-	0	NA	promoter-TSS (NM_144779)	promoter-TSS (NM_144779)	751	NM_014164	53827	Hs.333418	NM_001164605	ENSG00000089327	FXYD5	DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
chr1.32679267.-	chr1	32679267	32679268	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4572	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr6.166722252.+	chr6	166722252	166722253	+	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	-381	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr2.131085550.+	chr2	131085550	131085551	+	0	NA	Intergenic	LTR12D|LTR|ERV1	14372	NM_032357	84317	Hs.104203	NM_032357	ENSG00000136710	CCDC115	ccp1	coiled-coil domain containing 115	protein-coding
chr6.34770172.+	chr6	34770172	34770173	+	0	NA	"intron (NM_017754, intron 1 of 20)"	AluSx1|SINE|Alu	10378	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr7.155246312.+	chr7	155246312	155246313	+	0	NA	Intergenic	Intergenic	-4512	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chrX.53125828.+	chrX	53125828	53125829	+	0	NA	Intergenic	AluJb|SINE|Alu	14286	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr17.2756713.+	chr17	2756713	2756714	+	0	NA	"intron (NM_015085, intron 2 of 24)"	CpG	56981	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr7.75617570.+	chr7	75617570	75617571	+	0	NA	"exon (NM_031925, exon 6 of 12)"	"exon (NM_031925, exon 6 of 12)"	6422	NM_031925	83862	Hs.488835	NM_031925		TMEM120A	NET29|TMPIT	transmembrane protein 120A	protein-coding
chr3.9398150.+	chr3	9398150	9398151	+	0	NA	Intergenic	AluY|SINE|Alu	-6567	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr12.112407407.+	chr12	112407407	112407408	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43616	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr2.213402714.-	chr2	213402714	213402715	-	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	-638	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr19.5148569.-	chr19	5148569	5148570	-	0	NA	"intron (NM_015015, intron 21 of 22)"	"intron (NM_015015, intron 21 of 22)"	-179445	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr2.20424085.-	chr2	20424085	20424086	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-842	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr13.31735135.+	chr13	31735135	31735136	+	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	982	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr6.149638276.-	chr6	149638276	149638277	-	0	NA	Intergenic	CpG	1160	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr3.36494732.+	chr3	36494732	36494733	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72635	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr20.13910454.-	chr20	13910454	13910455	-	0	NA	"intron (NR_073207, intron 3 of 18)"	AluSx|SINE|Alu	-60811	NR_073206	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding
chr16.266031.+	chr16	266031	266032	+	0	NA	"intron (NM_201412, intron 3 of 9)"	AluSp|SINE|Alu	13418	NM_201412	55692	Hs.16803	NM_018032	ENSG00000007392	LUC7L	LUC7-LIKE|LUC7B1|Luc7|SR+89|hLuc7B1	LUC7-like (S. cerevisiae)	protein-coding
chr6.88117991.+	chr6	88117991	88117992	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	301	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr8.143373416.-	chr8	143373416	143373417	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93699	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr17.37768954.+	chr17	37768954	37768955	+	0	NA	Intergenic	Intergenic	-4779	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chrX.113575435.+	chrX	113575435	113575436	+	0	NA	Intergenic	AluJb|SINE|Alu	-243116	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr19.18116566.-	chr19	18116566	18116567	-	0	NA	"intron (NM_001025604, intron 1 of 7)"	SVA_D|Other|Other	2411	NM_015683	27106	Hs.515249	NM_001025604	ENSG00000105643	ARRDC2	CLONE24945	arrestin domain containing 2	protein-coding
chr5.25535455.-	chr5	25535455	25535456	-	0	NA	Intergenic	AluY|SINE|Alu	694763	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr14.99847887.+	chr14	99847887	99847888	+	0	NA	Intergenic	LTR86C|LTR|ERVL	99339	NM_032233	84193	Hs.510407	NM_032233	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding
chr3.49047718.+	chr3	49047718	49047719	+	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	3081	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr3.8721289.-	chr3	8721289	8721290	-	0	NA	Intergenic	Intergenic	27525	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr20.25293084.+	chr20	25293084	25293085	+	0	NA	"intron (NM_001042472, intron 6 of 12)"	SVA_C|Other|Other	64378	NM_002862	5834	Hs.368157	NM_002862	ENSG00000100994	PYGB	GPBB	"phosphorylase, glycogen; brain"	protein-coding
chr2.34289894.+	chr2	34289894	34289895	+	0	NA	Intergenic	AluSz|SINE|Alu	-336610	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chrX.69569438.-	chrX	69569438	69569439	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59559	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr10.70993520.+	chr10	70993520	70993521	+	0	NA	"intron (NM_025130, intron 4 of 17)"	AluY|SINE|Alu	13461	NM_025130	80201	Hs.522988	NM_025130	ENSG00000156510	HKDC1	-	hexokinase domain containing 1	protein-coding
chr16.1845132.+	chr16	1845132	1845133	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-223	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.158268125.+	chr7	158268125	158268126	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57380	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr1.96935676.-	chr1	96935676	96935677	-	0	NA	Intergenic	SVA_D|Other|Other	251499	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr18.57476937.+	chr18	57476937	57476938	+	0	NA	Intergenic	AluSz|SINE|Alu	-90255	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
chr10.81146790.-	chr10	81146790	81146791	-	0	NA	"intron (NM_153367, intron 3 of 3)"	"intron (NM_153367, intron 3 of 3)"	-39570	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr22.18131985.-	chr22	18131985	18131986	-	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	6443	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr16.8974122.-	chr16	8974122	8974123	-	0	NA	Intergenic	Intergenic	11259	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr3.133504047.+	chr3	133504047	133504048	+	0	NA	"intron (NM_021203, intron 1 of 7)"	SVA_F|Other|Other	1170	NM_021203	58477	Hs.12152	NM_021203		SRPRB	APMCF1	"signal recognition particle receptor, B subunit"	protein-coding
chr16.87360648.-	chr16	87360648	87360649	-	0	NA	Intergenic	Intergenic	9622	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr1.120304151.-	chr1	120304151	120304152	-	0	NA	"intron (NM_005518, intron 2 of 9)"	AluSc8|SINE|Alu	-7404	NM_005518	3158	Hs.59889	NM_001166107	ENSG00000134240	HMGCS2	-	3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial)	protein-coding
chr2.240129749.-	chr2	240129749	240129750	-	0	NA	"intron (NM_006037, intron 3 of 26)"	AluY|SINE|Alu	12596	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	miscRNA
chrX.42939916.+	chrX	42939916	42939917	+	0	NA	Intergenic	AluSx|SINE|Alu	-302430	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr1.97799064.+	chr1	97799064	97799065	+	0	NA	"intron (NM_000110, intron 16 of 22)"	"intron (NM_000110, intron 16 of 22)"	237585	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr2.1166124.-	chr2	1166124	1166125	-	0	NA	"intron (NM_018968, intron 7 of 16)"	"intron (NM_018968, intron 7 of 16)"	-219570	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr22.18532576.+	chr22	18532576	18532577	+	0	NA	Intergenic	AluSx1|SINE|Alu	20425	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr3.122695677.-	chr3	122695677	122695678	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	696	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr11.46721175.-	chr11	46721175	46721176	-	0	NA	"intron (NM_004308, intron 1 of 12)"	AluSg|SINE|Alu	-1040	NM_004308	392	Hs.138860	NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
chr17.40342728.+	chr17	40342728	40342729	+	0	NA	"exon (NM_001142623, exon 8 of 10)"	"exon (NM_001142623, exon 8 of 10)"	3527	NR_024573	84514	Hs.38039	NM_001142622	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
chr20.61021246.-	chr20	61021246	61021247	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18617	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr14.50838380.+	chr14	50838380	50838381	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24237	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr2.80188707.-	chr2	80188707	80188708	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	312222	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr2.99439259.-	chr2	99439259	99439260	-	0	NA	"exon (NM_207362, exon 7 of 10)"	"exon (NM_207362, exon 7 of 10)"	91670	NM_012214	11320	Hs.177576	NM_001160154	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A"	protein-coding
chr16.4835214.+	chr16	4835214	4835215	+	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	-3184	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr4.69917107.+	chr4	69917107	69917108	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-30994	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr19.14156302.-	chr19	14156302	14156303	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13669	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr1.40073631.-	chr1	40073631	40073632	-	0	NA	Intergenic	AluY|SINE|Alu	31110	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr5.1887193.+	chr5	1887193	1887194	+	0	NA	Intergenic	CpG-20520	-4313	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr11.1853622.-	chr11	1853622	1853623	-	0	NA	Intergenic	Intergenic	2052	NM_138567	90019	Hs.161031	NM_138567	ENSG00000149043	SYT8	-	synaptotagmin VIII	protein-coding
chr6.24495503.+	chr6	24495503	24495504	+	0	NA	"exon (NM_001080, exon 1 of 10)"	"exon (NM_001080, exon 1 of 10)"	306	NM_170740	7915	Hs.371723	NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	"aldehyde dehydrogenase 5 family, member A1"	protein-coding
chr17.3806725.+	chr17	3806725	3806726	+	0	NA	"intron (NM_002558, intron 6 of 11)"	"intron (NM_002558, intron 6 of 11)"	-10388	NM_032294	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr11.638981.-	chr11	638981	638982	-	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	-1676	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr2.202092558.+	chr2	202092558	202092559	+	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	-5608	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr18.13095701.+	chr18	13095701	13095702	+	0	NA	"intron (NM_032142, intron 35 of 44)"	"intron (NM_032142, intron 35 of 44)"	104340	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr3.102973941.-	chr3	102973941	102973942	-	0	NA	Intergenic	SVA_D|Other|Other	-820082	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr10.70420944.-	chr10	70420944	70420945	-	0	NA	"intron (NM_030625, intron 6 of 11)"	AluY|SINE|Alu	60027	NM_018237	55749	Hs.49853	NM_018237	ENSG00000060339	CCAR1	RP11-437A18.1	cell division cycle and apoptosis regulator 1	protein-coding
chr12.82765114.+	chr12	82765114	82765115	+	0	NA	"intron (NM_032230, intron 1 of 11)"	HERV9-int|LTR|ERV1	-12530	NR_033192	29080	Hs.582627	NM_014167	ENSG00000133773	CCDC59	BR22|TAP26	coiled-coil domain containing 59	protein-coding
chr15.41708260.+	chr15	41708260	41708261	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1042	NM_015138	23168	Hs.511096	NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	"Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)"	protein-coding
chr2.159651773.+	chr2	159651773	159651774	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-56	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr19.38836190.-	chr19	38836190	38836191	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9747	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr22.46929370.+	chr22	46929370	46929371	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3697	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr9.7934819.+	chr9	7934819	7934820	+	0	NA	Intergenic	AluY|SINE|Alu	-135020	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr10.126700503.-	chr10	126700503	126700504	-	0	NA	"intron (NM_001083914, intron 3 of 10)"	"intron (NM_001083914, intron 3 of 10)"	-15950	NM_022802	1488	Hs.501345	NM_001083914	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
chr5.13580285.+	chr5	13580285	13580286	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	364304	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	"dynein, axonemal, heavy chain 5"	protein-coding
chr8.59686478.+	chr8	59686478	59686479	+	0	NA	Intergenic	AluY|SINE|Alu	-114074	NM_003580	8439	Hs.372000	NM_001144772	ENSG00000035681	NSMAF	FAN	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding
chr1.110881116.+	chr1	110881116	110881117	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	677	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr7.76634510.+	chr7	76634510	76634511	+	0	NA	"intron (NR_023383, intron 5 of 10)"	"intron (NR_023383, intron 5 of 10)"	24371	NR_023383	441263	Hs.675888	NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11|PMS2P11|PMSR6	DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene	pseudo
chrM.11272.-	chrM	11272	11273	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr13.21644855.+	chr13	21644855	21644856	+	0	NA	Intergenic	AluSx|SINE|Alu	-9133	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr18.70912377.-	chr18	70912377	70912378	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19356	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr5.78890189.-	chr5	78890189	78890190	-	0	NA	Intergenic	AluY|SINE|Alu	18054	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr17.37701013.-	chr17	37701013	37701014	-	0	NA	Intergenic	AluSp|SINE|Alu	-63162	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr8.26518521.+	chr8	26518521	26518522	+	0	NA	Intergenic	AluSx|SINE|Alu	82600	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr3.185541176.-	chr3	185541176	185541177	-	0	NA	"intron (NM_006548, intron 1 of 15)"	CpG	-1651	NM_006548	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr12.91811114.-	chr12	91811114	91811115	-	0	NA	Intergenic	AluY|SINE|Alu	234308	NM_001920	1634	Hs.156316	NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
chr20.33713332.-	chr20	33713332	33713333	-	0	NA	"intron (NM_001145025, intron 7 of 9)"	AluY|SINE|Alu	-21829	NR_026728	55741	Hs.720177	NM_001145025	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	"ER degradation enhancer, mannosidase alpha-like 2"	protein-coding
chr2.63277443.+	chr2	63277443	63277444	+	0	NA	promoter-TSS (NM_014562)	promoter-TSS (NM_014562)	251	NM_001199770	5013	Hs.734360	NM_001199770	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
chr11.2213952.+	chr11	2213952	2213953	+	0	NA	Intergenic	Intergenic	19659	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr5.108745556.+	chr5	108745556	108745557	+	0	NA	"5' UTR (NM_014819, exon 1 of 10)"	"5' UTR (NM_014819, exon 1 of 10)"	119	NM_014819	9867	Hs.592564	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	"praja ring finger 2, E3 ubiquitin protein ligase"	protein-coding
chr16.4763968.+	chr16	4763968	4763969	+	0	NA	"intron (NM_001242929, intron 4 of 14)"	"intron (NM_001242929, intron 4 of 14)"	20195	NM_133450	124401	Hs.654859	NM_001242929	ENSG00000168096	ANKS3	-	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding
chr15.42840949.+	chr15	42840949	42840950	+	0	NA	promoter-TSS (NM_001130447)	promoter-TSS (NM_001130447)	53	NM_153260	255252	Hs.234681	NM_153260	ENSG00000180979	LRRC57	-	leucine rich repeat containing 57	protein-coding
chr3.8721152.-	chr3	8721152	8721153	-	0	NA	Intergenic	Intergenic	27388	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr1.3053024.-	chr1	3053024	3053025	-	0	NA	"intron (NM_199454, intron 1 of 16)"	MIR3|SINE|MIR	-8485	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr1.117453137.+	chr1	117453137	117453138	+	0	NA	"intron (NM_020440, intron 1 of 8)"	CpG	448	NM_020440	5738	Hs.418093	NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
chr17.4708685.-	chr17	4708685	4708686	-	0	NA	Intergenic	AluSp|SINE|Alu	1711	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr20.33366481.-	chr20	33366481	33366482	-	0	NA	"intron (NM_014071, intron 3 of 14)"	AluSc|SINE|Alu	-46952	NM_001242539	23054	Hs.736403	NM_001242539	ENSG00000198646	NCOA6	AIB3|ASC2|NRC|PRIP|RAP250|TRBP	nuclear receptor coactivator 6	protein-coding
chr1.55297183.-	chr1	55297183	55297184	-	0	NA	"intron (NM_001110533, intron 9 of 9)"	AluSq2|SINE|Alu	-25447	NM_152607	163747	Hs.376018	NM_001110533	ENSG00000162398	C1orf177	-	chromosome 1 open reading frame 177	protein-coding
chr6.108315265.-	chr6	108315265	108315266	-	0	NA	Intergenic	AluSz|SINE|Alu	35783	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr1.9832301.-	chr1	9832301	9832302	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52249	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr7.99630221.+	chr7	99630221	99630222	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17002	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr9.36596636.+	chr9	36596636	36596637	+	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	23777	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr8.143851335.-	chr8	143851335	143851336	-	0	NA	promoter-TSS (NM_177458)	promoter-TSS (NM_177458)	89	NM_177458	66004	Hs.604828	NM_023946	ENSG00000180155	LYNX1	SLURP2	Ly6/neurotoxin 1	protein-coding
chr13.96681147.+	chr13	96681147	96681148	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24589	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr20.13660597.-	chr20	13660597	13660598	-	0	NA	Intergenic	AluY|SINE|Alu	41014	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr17.20420651.+	chr17	20420651	20420652	+	0	NA	Intergenic	Intergenic	-12840	NR_029393	644945	Hs.572477	NR_029393	ENSG00000214822	KRT16P3	-	keratin 16 pseudogene 3	pseudo
chr5.89746520.-	chr5	89746520	89746521	-	0	NA	Intergenic	AluSz|SINE|Alu	-24065	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr14.23706389.-	chr14	23706389	23706390	-	0	NA	Intergenic	AluSz|SINE|Alu	-48920	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr17.15863765.-	chr17	15863765	15863766	-	0	NA	"intron (NM_000676, intron 1 of 1)"	AluY|SINE|Alu	-15534	NM_000676	136	Hs.167046	NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
chr3.44743400.-	chr3	44743400	44743401	-	0	NA	Intergenic	AluY|SINE|Alu	10735	NM_001134442	91392	Hs.224843	NM_001134440	ENSG00000196653	ZNF502	-	zinc finger protein 502	protein-coding
chr10.105119750.-	chr10	105119750	105119751	-	0	NA	Intergenic	AluYf4|SINE|Alu	7974	NM_006951	6877	Hs.96103	NM_006951	ENSG00000148835	TAF5	TAF2D|TAFII100	"TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa"	protein-coding
chr5.45596285.+	chr5	45596285	45596286	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99935	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr3.58124099.+	chr3	58124099	58124100	+	0	NA	"exon (NM_001164317, exon 30 of 47)"	"exon (NM_001164317, exon 30 of 47)"	72631	NM_004944	1776	Hs.476453	NM_001256560	ENSG00000163687	DNASE1L3	DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease I-like 3	protein-coding
chr1.22178377.+	chr1	22178377	22178378	+	0	NA	"exon (NM_005529, exon 54 of 97)"	"exon (NM_005529, exon 54 of 97)"	39619	NM_001013693	401944	Hs.710255	NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
chr15.98504648.+	chr15	98504648	98504649	+	0	NA	"intron (NM_183376, intron 1 of 7)"	CpG	715	NM_183376	91947	Hs.6093	NM_183376	ENSG00000140450	ARRDC4	-	arrestin domain containing 4	protein-coding
chr4.177146902.+	chr4	177146902	177146903	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30080	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr11.71878788.+	chr11	71878788	71878789	+	0	NA	Intergenic	AluSx|SINE|Alu	-21814	NM_016725	2348	Hs.73769	NM_000802	ENSG00000110195	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
chr20.32056490.-	chr20	32056490	32056491	-	0	NA	Intergenic	AluSx1|SINE|Alu	21438	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr22.39239814.-	chr22	39239814	39239815	-	0	NA	"exon (NM_014293, exon 1 of 5)"	"exon (NM_014293, exon 1 of 5)"	-203	NM_014293	23467	Hs.91622	NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
chr1.6471026.+	chr1	6471026	6471027	+	0	NA	Intergenic	AluSz|SINE|Alu	8953	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr8.43413762.-	chr8	43413762	43413763	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266177	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr18.46969360.+	chr18	46969360	46969361	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17719	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr1.243422563.-	chr1	243422563	243422564	-	0	NA	"intron (NM_006642, intron 1 of 17)"	AluY|SINE|Alu	-3256	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
chr6.65337696.-	chr6	65337696	65337697	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673615	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr5.43588011.+	chr5	43588011	43588012	+	0	NA	"intron (NR_073113, intron 1 of 2)"	AluY|SINE|Alu	-14780	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
chr19.19594720.+	chr19	19594720	19594721	+	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	31749	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr7.2352688.-	chr7	2352688	2352689	-	0	NA	"intron (NM_013321, intron 1 of 10)"	AluY|SINE|Alu	-1411	NM_013321	29886	Hs.584900	NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
chr5.171395329.-	chr5	171395329	171395330	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38548	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr10.32358165.-	chr10	32358165	32358166	-	0	NA	Intergenic	AluSg7|SINE|Alu	12794	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr10.81319153.+	chr10	81319153	81319154	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	1010	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr7.1474628.+	chr7	1474628	1474629	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24481	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr10.5680222.-	chr10	5680222	5680223	-	0	NA	TTS (NR_024581)	TTS (NR_024581)	-28336	NR_037164	79754	Hs.445899	NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
chr20.5213453.+	chr20	5213453	5213454	+	0	NA	Intergenic	AluJr4|SINE|Alu	81562	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr3.53118187.+	chr3	53118187	53118188	+	0	NA	Intergenic	Intergenic	-38098	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT	Scm-like with four mbt domains 1	protein-coding
chr12.9892358.+	chr12	9892358	9892359	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6463	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr11.5315840.+	chr11	5315840	5315841	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7336	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr11.41260605.+	chr11	41260605	41260606	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220581	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr10.135075429.-	chr10	135075429	135075430	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14305	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr13.28369121.+	chr13	28369121	28369122	+	0	NA	Intergenic	Intergenic	2341	NM_145657	219409	Hs.351785	NM_145657		GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
chr8.95668716.+	chr8	95668716	95668717	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15352	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr22.46929383.-	chr22	46929383	46929384	-	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	-3684	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr15.40695643.-	chr15	40695643	40695644	-	0	NA	Intergenic	AluY|SINE|Alu	2043	NM_002225	3712	Hs.513646	NM_001159508	ENSG00000128928	IVD	ACAD2	isovaleryl-CoA dehydrogenase	protein-coding
chr16.71414318.+	chr16	71414318	71414319	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21702	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr7.140185557.-	chr7	140185557	140185558	-	0	NA	Intergenic	FLAM_C|SINE|Alu	6188	NM_013446	23608	Hs.490347	NM_001145125	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
chr19.373606.-	chr19	373606	373607	-	0	NA	"intron (NM_199202, intron 2 of 6)"	"intron (NM_199202, intron 2 of 6)"	-2407	NM_016585	51298	Hs.250002	NM_016585	ENSG00000105549	THEG	CT56|THEG1	theg spermatid protein	protein-coding
chr15.54459463.+	chr15	54459463	54459464	+	0	NA	"intron (NM_001080534, intron 3 of 30)"	AluY|SINE|Alu	154362	NM_001080534	440279	Hs.657273	NM_001080534	ENSG00000137766	UNC13C	-	unc-13 homolog C (C. elegans)	protein-coding
chr13.110551451.-	chr13	110551451	110551452	-	0	NA	Intergenic	AluSx|SINE|Alu	112537	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr13.100409970.+	chr13	100409970	100409971	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluSq|SINE|Alu	114657	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr20.11974563.+	chr20	11974563	11974564	+	0	NA	Intergenic	AluY|SINE|Alu	75998	NM_014962	22903	Hs.709366	NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
chr6.168352158.+	chr6	168352158	168352159	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25461	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr11.1910549.+	chr11	1910549	1910550	+	0	NA	"intron (NM_001013254, intron 10 of 10)"	"intron (NM_001013254, intron 10 of 10)"	18395	NM_001013255	4046	Hs.56729	NM_001013253	ENSG00000130592	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
chr22.51001358.+	chr22	51001358	51001359	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-30	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.236991438.+	chr1	236991438	236991439	+	0	NA	"intron (NM_000254, intron 11 of 32)"	AluY|SINE|Alu	32857	NM_000254	4548	Hs.498187	NM_000254	ENSG00000116984	MTR	MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
chr2.220430198.+	chr2	220430198	220430199	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6070	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr6.149638283.+	chr6	149638283	149638284	+	0	NA	Intergenic	CpG	-1153	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr4.184718337.-	chr4	184718337	184718338	-	0	NA	Intergenic	CpG	108172	NM_020225	56977	Hs.696657	NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
chr2.224724678.-	chr2	224724678	224724679	-	0	NA	Intergenic	AluSp|SINE|Alu	22359	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr3.8721263.-	chr3	8721263	8721264	-	0	NA	Intergenic	Intergenic	27499	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr18.29434835.+	chr18	29434835	29434836	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88256	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr4.96097972.+	chr4	96097972	96097973	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85330	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr9.107727128.-	chr9	107727128	107727129	-	0	NA	Intergenic	AluYa5|SINE|Alu	36601	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr16.4537730.-	chr16	4537730	4537731	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8129	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr8.68297800.+	chr8	68297800	68297801	+	0	NA	Intergenic	AluY|SINE|Alu	-41888	NM_006421	10565	Hs.656902	NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)	protein-coding
chr7.53196212.-	chr7	53196212	53196213	-	0	NA	Intergenic	AluY|SINE|Alu	-92863	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr17.8191985.-	chr17	8191985	8191986	-	0	NA	promoter-TSS (NM_016492)	promoter-TSS (NM_016492)	-16	NM_001177801	29098	Hs.408233	NM_001177801	ENSG00000108961	RANGRF	HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
chr10.135192266.-	chr10	135192266	135192267	-	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	475	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr14.23706416.+	chr14	23706416	23706417	+	0	NA	Intergenic	AluSz|SINE|Alu	48893	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr7.62940021.-	chr7	62940021	62940022	-	0	NA	Intergenic	AluYf4|SINE|Alu	80602	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr22.51001330.+	chr22	51001330	51001331	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-2	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr12.31575362.-	chr12	31575362	31575363	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96203	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr17.80687684.+	chr17	80687684	80687685	+	0	NA	Intergenic	CpG	-5768	NM_022158	64122	Hs.151135	NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
chr6.1604607.+	chr6	1604607	1604608	+	0	NA	Intergenic	CpG	-6074	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr22.49181551.-	chr22	49181551	49181552	-	0	NA	Intergenic	AluSx1|SINE|Alu	-5444	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	miscRNA
chr5.95509647.+	chr5	95509647	95509648	+	0	NA	Intergenic	AluY|SINE|Alu	94805	NR_030309	693168		NR_030309	ENSG00000207578	MIR583	MIRN583|hsa-mir-583	microRNA 583	miscRNA
chr1.65532977.+	chr1	65532977	65532978	+	0	NA	Intergenic	CpG	-8786	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr3.95669675.+	chr3	95669675	95669676	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267638	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr14.19890137.+	chr14	19890137	19890138	+	0	NA	Intergenic	CpG	-4232	NR_073460	101101776	Hs.617315	NR_073460		LOC101101776	-	ribosome biogenesis protein BMS1 homolog pseudogene	pseudo
chr21.43198259.+	chr21	43198259	43198260	+	0	NA	Intergenic	Intergenic	-11010	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr2.55647026.+	chr2	55647026	55647027	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	31	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chrX.70362701.+	chrX	70362701	70362702	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-1980	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr16.30063874.+	chr16	30063874	30063875	+	0	NA	promoter-TSS (NM_000034)	promoter-TSS (NM_000034)	-537	NM_000034	226	Hs.732822	NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12	"aldolase A, fructose-bisphosphate"	protein-coding
chrX.46794139.+	chrX	46794139	46794140	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22271	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr9.139879995.+	chr9	139879995	139879996	+	0	NA	"3' UTR (NM_207510, exon 3 of 3)"	"3' UTR (NM_207510, exon 3 of 3)"	2550	NM_207510	401562	Hs.695210	NM_207510	ENSG00000214402	LCNL1	-	lipocalin-like 1	protein-coding
chr1.158012615.+	chr1	158012615	158012616	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49552	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr19.14156270.+	chr19	14156270	14156271	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13701	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr6.165122641.+	chr6	165122641	165122642	+	0	NA	Intergenic	Intergenic	600470	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr5.1144391.+	chr5	1144391	1144392	+	0	NA	Intergenic	Intergenic	-32219	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr22.38336369.-	chr22	38336369	38336370	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13285	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr7.43744817.+	chr7	43744817	43744818	+	0	NA	"intron (NR_047701, intron 1 of 7)"	L1PA15|LINE|L1	24323	NR_047701	55744	Hs.655165	NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae)	protein-coding
chr8.8239215.-	chr8	8239215	8239216	-	0	NA	promoter-TSS (NM_001080826)	promoter-TSS (NM_001080826)	-42	NM_001080826	157285	Hs.657673	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
chrX.91037248.+	chrX	91037248	91037249	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2988	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr11.73020387.+	chr11	73020387	73020388	+	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	724	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr19.20713419.+	chr19	20713419	20713420	+	0	NA	Intergenic	SVA_D|Other|Other	35207	NM_001159293	100129842	Hs.515696	NM_001159293		ZNF737	ZNF102	zinc finger protein 737	protein-coding
chr17.70877073.+	chr17	70877073	70877074	+	0	NA	"intron (NM_139177, intron 5 of 9)"	AluY|SINE|Alu	211780	NM_139177	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr18.9708131.+	chr18	9708131	9708132	+	0	NA	promoter-TSS (NM_006868)	promoter-TSS (NM_006868)	-97	NM_006868	11031	Hs.99528	NM_006868	ENSG00000168461	RAB31	Rab22B	"RAB31, member RAS oncogene family"	protein-coding
chr17.48422556.-	chr17	48422556	48422557	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	837	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr12.112426313.-	chr12	112426313	112426314	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24710	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr6.148670559.-	chr6	148670559	148670560	-	0	NA	"intron (NM_015278, intron 1 of 19)"	AluSx1|SINE|Alu	-6830	NM_015278	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
chr10.134216443.-	chr10	134216443	134216444	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5741	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr16.15684176.-	chr16	15684176	15684177	-	0	NA	Intergenic	AluY|SINE|Alu	-52847	NM_001184998	9665	Hs.173524	NM_019081	ENSG00000166783	KIAA0430	LKAP|MARF1|PPP1R34	KIAA0430	protein-coding
chr3.4664354.+	chr3	4664354	4664355	+	0	NA	"intron (NM_002222, intron 4 of 57)"	AluSc|SINE|Alu	128920	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	miscRNA
chr10.135031584.-	chr10	135031584	135031585	-	0	NA	"intron (NM_152643, intron 26 of 29)"	"intron (NM_152643, intron 26 of 29)"	12194	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr10.131769838.-	chr10	131769838	131769839	-	0	NA	Intergenic	CpG-3433	7747	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr1.163322510.-	chr1	163322510	163322511	-	0	NA	"intron (NM_031423, intron 13 of 13)"	AluY|SINE|Alu	-30787	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr3.78390295.-	chr3	78390295	78390296	-	0	NA	Intergenic	AluY|SINE|Alu	-678314	NM_001145845	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr3.47744614.-	chr3	47744614	47744615	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78791	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr8.56098974.-	chr8	56098974	56098975	-	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	-83957	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr16.632125.-	chr16	632125	632126	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7232	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr2.90482969.-	chr2	90482969	90482970	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365006	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr9.120507292.-	chr9	120507292	120507293	-	0	NA	Intergenic	CpG	-40839	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr4.187112217.-	chr4	187112217	187112218	-	0	NA	promoter-TSS (NM_207352)	promoter-TSS (NM_207352)	-427	NR_046264	651430	Hs.727796	NR_046264		FLJ38576	-	uncharacterized LOC651430	miscRNA
chr2.137180642.+	chr2	137180642	137180643	+	0	NA	Intergenic	AluSq2|SINE|Alu	-304917	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr19.12523662.+	chr19	12523662	12523663	+	0	NA	Intergenic	AluSp|SINE|Alu	-11574	NM_001080821	90576	Hs.546637	NM_203381	ENSG00000196466	ZNF799	HIT-40|ZNF842	zinc finger protein 799	protein-coding
chr1.240947694.-	chr1	240947694	240947695	-	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	172232	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr10.131769963.+	chr10	131769963	131769964	+	0	NA	Intergenic	CpG-3433	-7872	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chrX.53111607.+	chrX	53111607	53111608	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	65	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.233601884.+	chr1	233601884	233601885	+	0	NA	Intergenic	LTR12E|LTR|ERV1	138370	NM_032435	84451	Hs.547779	NM_032435	ENSG00000143674	KIAA1804	MLK4|RP5-862P8.2|dJ862P8.3	mixed lineage kinase 4	protein-coding
chr17.38400060.+	chr17	38400060	38400061	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24486	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr9.861772.+	chr9	861772	861773	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20082	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr22.41715328.-	chr22	41715328	41715329	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17821	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr8.60674706.-	chr8	60674706	60674707	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519248	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr3.99923776.-	chr3	99923776	99923777	-	0	NA	Intergenic	AluSq|SINE|Alu	-19108	NR_028358	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30C	CDC50C	transmembrane protein 30C	pseudo
chr21.47838725.+	chr21	47838725	47838726	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40137	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chrX.142413211.-	chrX	142413211	142413212	-	0	NA	Intergenic	AluSg|SINE|Alu	-192096	NM_001009609	139067	Hs.447320	NM_001009609	ENSG00000189252	SPANXN3	CT11.8|SPANX-N3	"SPANX family, member N3"	protein-coding
chr16.88257867.+	chr16	88257867	88257868	+	0	NA	Intergenic	Intergenic	-236012	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr4.186064609.-	chr4	186064609	186064610	-	0	NA	"exon (NM_001151, exon 1 of 4)"	"exon (NM_001151, exon 1 of 4)"	-192	NM_001151	291	Hs.246506	NM_001151		SLC25A4	AAC1|ANT|ANT1|PEO2|PEO3|T1	"solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4"	protein-coding
chr1.54775672.-	chr1	54775672	54775673	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96307	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr4.187643285.-	chr4	187643285	187643286	-	0	NA	"intron (NM_005245, intron 1 of 26)"	AluSp|SINE|Alu	-1702	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chr5.128197062.-	chr5	128197062	128197063	-	0	NA	Intergenic	AluYk4|SINE|Alu	104148	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr8.11312310.-	chr8	11312310	11312311	-	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	-11966	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr19.38755118.-	chr19	38755118	38755119	-	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	-20	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr16.58567188.+	chr16	58567188	58567189	+	0	NA	"intron (NM_001265612, intron 40 of 48)"	AluY|SINE|Alu	15349	NR_002978	677827	Hs.688592	NR_002978		SNORA46	ACA46	"small nucleolar RNA, H/ACA box 46"	snoRNA
chr21.45566091.-	chr21	45566091	45566092	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12597	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chrX.15336037.-	chrX	15336037	15336038	-	0	NA	Intergenic	AluY|SINE|Alu	2291	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr16.75032892.-	chr16	75032892	75032893	-	0	NA	promoter-TSS (NM_032268)	promoter-TSS (NM_032268)	23	NM_032268	84937	Hs.427284	NM_032268	ENSG00000186187	ZNRF1	NIN283	"zinc and ring finger 1, E3 ubiquitin protein ligase"	protein-coding
chr4.171848471.+	chr4	171848471	171848472	+	0	NA	Intergenic	AluSx|SINE|Alu	-113282	NR_038838	100506122	Hs.434205	NR_038838	ENSG00000248872	LOC100506122	-	uncharacterized LOC100506122	miscRNA
chr12.117605448.-	chr12	117605448	117605449	-	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	-22852	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr17.46101316.-	chr17	46101316	46101317	-	0	NA	Intergenic	CpG	-13297	NR_029687	406943		NR_029687		MIR152	MIRN152	microRNA 152	miscRNA
chr22.38498786.-	chr22	38498786	38498787	-	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	-7890	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr1.59041999.-	chr1	59041999	59042000	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1167	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr15.65796557.+	chr15	65796557	65796558	+	0	NA	"intron (NM_017743, intron 3 of 17)"	AluSp|SINE|Alu	13052	NM_197960	54878	Hs.591106	NM_017743		DPP8	DP8|DPRP1|MSTP141	dipeptidyl-peptidase 8	protein-coding
chr8.56758279.-	chr8	56758279	56758280	-	0	NA	Intergenic	AluSx3|SINE|Alu	34107	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr20.55220978.-	chr20	55220978	55220979	-	0	NA	Intergenic	AluY|SINE|Alu	-16620	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr1.1229507.-	chr1	1229507	1229508	-	0	NA	"exon (NM_030649, exon 22 of 24)"	"exon (NM_030649, exon 22 of 24)"	-13691	NM_001130413	6339	Hs.512681	NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	"sodium channel, non-voltage-gated 1, delta subunit"	protein-coding
chr8.609242.-	chr8	609242	609243	-	0	NA	Intergenic	Intergenic	-71984	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr22.50871782.-	chr22	50871782	50871783	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41682	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr6.10074191.-	chr6	10074191	10074192	-	0	NA	Intergenic	LTR12C|LTR|ERV1	338360	NR_033910	100130275	Hs.661431	NR_033910		LOC100130275	-	uncharacterized LOC100130275	miscRNA
chr7.5396295.+	chr7	5396295	5396296	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66882	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr21.43198316.-	chr21	43198316	43198317	-	0	NA	Intergenic	Intergenic	11067	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr16.84670307.-	chr16	84670307	84670308	-	0	NA	Intergenic	AluY|SINE|Alu	11824	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr17.21825573.+	chr17	21825573	21825574	+	0	NA	"non-coding (NR_028336, exon 1 of 2)"	"non-coding (NR_028336, exon 1 of 2)"	203	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr2.90482970.-	chr2	90482970	90482971	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365005	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr1.567430.+	chr1	567430	567431	+	0	NA	Intergenic	Intergenic	54604	NM_001005224	26683	Hs.722724	NM_001005224	ENSG00000230178	OR4F3	-	"olfactory receptor, family 4, subfamily F, member 3"	protein-coding
chr17.8892435.+	chr17	8892435	8892436	+	0	NA	Intergenic	AluSp|SINE|Alu	-23406	NM_001142633	23533	Hs.738684	NM_001142633	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	"phosphoinositide-3-kinase, regulatory subunit 5"	protein-coding
chr19.45524634.-	chr19	45524634	45524635	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17664	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr14.71374344.+	chr14	71374344	71374345	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	222	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr9.120507382.-	chr9	120507382	120507383	-	0	NA	Intergenic	CpG	-40929	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr15.75494193.+	chr15	75494193	75494194	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-28	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr5.91967012.+	chr5	91967012	91967013	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939487	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr10.59351197.+	chr10	59351197	59351198	+	0	NA	Intergenic	AluY|SINE|Alu	-286878	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr13.50701765.-	chr13	50701765	50701766	-	0	NA	Intergenic	CpG-6444	2088	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr3.68753603.+	chr3	68753603	68753604	+	0	NA	Intergenic	AluSx3|SINE|Alu	228158	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr22.42679836.+	chr22	42679836	42679837	+	0	NA	Intergenic	CpG	14077	NR_036498	388906	Hs.730075	NR_036498	ENSG00000182057	LOC388906	-	opioid growth factor receptor pseudogene	pseudo
chr2.240402019.-	chr2	240402019	240402020	-	0	NA	Intergenic	Intergenic	79376	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr5.693742.-	chr5	693742	693743	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	232	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr10.134216424.-	chr10	134216424	134216425	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	MER58A|DNA|hAT-Charlie	-5722	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr9.90885105.-	chr9	90885105	90885106	-	0	NA	Intergenic	AluJb|SINE|Alu	118192	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr3.128161129.+	chr3	128161129	128161130	+	0	NA	Intergenic	Intergenic	-21308	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr10.133016249.-	chr10	133016249	133016250	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93735	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr19.13497355.+	chr19	13497355	13497356	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119919	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr6.2221740.+	chr6	2221740	2221741	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24128	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr21.32930815.-	chr21	32930815	32930816	-	0	NA	"intron (NM_003253, intron 1 of 28)"	CpG	-475	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr5.86907794.+	chr5	86907794	86907795	+	0	NA	Intergenic	AluY|SINE|Alu	-198944	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr12.51681488.-	chr12	51681488	51681489	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17286	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr12.101674148.-	chr12	101674148	101674149	-	0	NA	"intron (NM_014503, intron 1 of 61)"	CpG	-243	NM_014503	27340	Hs.295732	NM_014503	ENSG00000120800	UTP20	DRIM	"UTP20, small subunit (SSU) processome component, homolog (yeast)"	protein-coding
chr9.137011247.+	chr9	137011247	137011248	+	0	NA	"intron (NM_017588, intron 7 of 13)"	AluY|SINE|Alu	6333	NM_052821	11091	Hs.397638	NM_017588	ENSG00000196363	WDR5	BIG-3|SWD3	WD repeat domain 5	protein-coding
chr16.46765499.+	chr16	46765499	46765500	+	0	NA	"intron (NM_182493, intron 4 of 12)"	"intron (NM_182493, intron 4 of 12)"	16722	NM_182493	91807	Hs.130465	NM_182493		MYLK3	MLCK|MLCK2|caMLCK	myosin light chain kinase 3	protein-coding
chr16.3755337.+	chr16	3755337	3755338	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12261	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr2.32250716.+	chr2	32250716	32250717	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14128	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr14.105834572.-	chr14	105834572	105834573	-	0	NA	"intron (NM_001243127, intron 6 of 23)"	"intron (NM_001243127, intron 6 of 23)"	30348	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
chr21.34922685.-	chr21	34922685	34922686	-	0	NA	"exon (NM_138927, exon 3 of 12)"	"exon (NM_138927, exon 3 of 12)"	-7335	NM_032195	6651	Hs.517262	NM_032195	ENSG00000159140	SON	BASS1|C21orf50|DBP-5|NREBP|SON3	SON DNA binding protein	protein-coding
chr19.4910195.-	chr19	4910195	4910196	-	0	NA	promoter-TSS (NM_013282)	promoter-TSS (NM_013282)	371	NM_013282	29128	Hs.108106	NM_001048201		UHRF1	ICBP90|Np95|RNF106|hNP95|hUHRF1	ubiquitin-like with PHD and ring finger domains 1	protein-coding
chr6.109611744.-	chr6	109611744	109611745	-	0	NA	Intergenic	CpG	3762	NR_028595	221262	Hs.723571	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	"coiled-coil domain containing 162, pseudogene"	pseudo
chr5.612611.+	chr5	612611	612612	+	0	NA	"intron (NM_018140, intron 1 of 11)"	CpG	206	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72kDa	protein-coding
chr2.235844070.-	chr2	235844070	235844071	-	0	NA	Intergenic	Intergenic	16558	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr13.108435250.+	chr13	108435250	108435251	+	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	84210	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr8.19626744.+	chr8	19626744	19626745	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48174	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr16.632133.+	chr16	632133	632134	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7224	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr7.157129509.+	chr7	157129509	157129510	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-201	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr5.176292833.+	chr5	176292833	176292834	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33500	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr7.130728507.+	chr7	130728507	130728508	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63282	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr19.58310309.-	chr19	58310309	58310310	-	0	NA	Intergenic	AluY|SINE|Alu	-15972	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr11.66997287.+	chr11	66997287	66997288	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10219	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr19.18057795.-	chr19	18057795	18057796	-	0	NA	Intergenic	AluSx|SINE|Alu	4316	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr3.93689437.-	chr3	93689437	93689438	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3497	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr8.6875629.-	chr8	6875629	6875630	-	0	NA	"intron (NM_004084, intron 1 of 2).3"	"intron (NM_004084, intron 1 of 2).3"	-187	NM_005217	1668	Hs.654448	NM_005217	ENSG00000239839	DEFA3	DEF3|HNP-3|HNP3|HP-3|HP3	"defensin, alpha 3, neutrophil-specific"	protein-coding
chr1.22586213.+	chr1	22586213	22586214	+	0	NA	Intergenic	Intergenic	-116694	NM_030761	54361	Hs.25766	NM_030761		WNT4	SERKAL|WNT-4	"wingless-type MMTV integration site family, member 4"	protein-coding
chr17.7183179.-	chr17	7183179	7183180	-	0	NA	Intergenic	AluSx|SINE|Alu	1875	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr9.138663328.+	chr9	138663328	138663329	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69297	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr11.133763850.+	chr11	133763850	133763851	+	0	NA	Intergenic	AluY|SINE|Alu	4626	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr7.53761631.-	chr7	53761631	53761632	-	0	NA	"intron (NR_038371, intron 4 of 5)"	AluY|SINE|Alu	-117993	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr20.61371656.+	chr20	61371656	61371657	+	0	NA	"intron (NM_002531, intron 1 of 3)"	"intron (NM_002531, intron 1 of 3)"	31467	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
chr10.121631706.-	chr10	121631706	121631707	-	0	NA	"intron (NM_001256379, intron 1 of 15)"	CpG	-689	NM_001256378	79892	Hs.124246	NM_001256378	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
chr6.45365098.+	chr6	45365098	45365099	+	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	-19310	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr6.126111925.+	chr6	126111925	126111926	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	16	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr7.129327250.-	chr7	129327250	129327251	-	0	NA	"intron (NM_001040110, intron 4 of 10)"	AluSx1|SINE|Alu	-57331	NM_001040110	4899	Hs.654363	NM_001040110	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
chr15.89219707.-	chr15	89219707	89219708	-	0	NA	Intergenic	AluSx|SINE|Alu	-37668	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
chr2.95885039.+	chr2	95885039	95885040	+	0	NA	Intergenic	AluY|SINE|Alu	53856	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr11.33476397.-	chr11	33476397	33476398	-	0	NA	Intergenic	AluY|SINE|Alu	87480	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549-like	protein-coding
chr2.81982183.+	chr2	81982183	81982184	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101744	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr2.116681994.+	chr2	116681994	116681995	+	0	NA	Intergenic	AluSx|SINE|Alu	762310	NM_001004360	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr6.170764147.-	chr6	170764147	170764148	-	0	NA	Intergenic	Intergenic	-98270	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	"proteasome (prosome, macropain) subunit, beta type, 1"	protein-coding
chr15.63892636.-	chr15	63892636	63892637	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-390	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr8.144503748.+	chr8	144503748	144503749	+	0	NA	Intergenic	CpG	8854	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.19560990.+	chr2	19560990	19560991	+	0	NA	Intergenic	CpG	-2618	NM_145260	130497	Hs.123933	NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related 1 (Drosophila)	protein-coding
chr7.1542255.-	chr7	1542255	1542256	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1763	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr1.156593690.-	chr1	156593690	156593691	-	0	NA	"exon (NM_021817, exon 4 of 7)"	"exon (NM_021817, exon 4 of 7)"	-4604	NM_021817	60484	Hs.410719	NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
chr7.12736926.+	chr7	12736926	12736927	+	0	NA	Intergenic	AluSg|SINE|Alu	10015	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chrM.6516.+	chrM	6516	6517	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.88491244.-	chr9	88491244	88491245	-	0	NA	Intergenic	AluYc|SINE|Alu	64813	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr19.578664.-	chr19	578664	578665	-	0	NA	"intron (NM_001728, intron 2 of 8)"	"intron (NM_001728, intron 2 of 8)"	-6210	NM_198589	682	Hs.501293	NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|M6|OK|TCSF	basigin (Ok blood group)	protein-coding
chr4.114652884.+	chr4	114652884	114652885	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30199	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr8.144504250.+	chr8	144504250	144504251	+	0	NA	Intergenic	Intergenic	8352	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.242491495.+	chr2	242491495	242491496	+	0	NA	"intron (NR_033346, intron 1 of 1)"	"intron (NR_033346, intron 1 of 1)"	-6651	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr2.42801299.-	chr2	42801299	42801300	-	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	-5628	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr11.30607780.+	chr11	30607780	30607781	+	0	NA	"5' UTR (NM_001145399, exon 1 of 7)"	"5' UTR (NM_001145399, exon 1 of 7)"	150	NM_001145399	744	Hs.289795	NM_001145399	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
chr3.99923780.-	chr3	99923780	99923781	-	0	NA	Intergenic	AluSq|SINE|Alu	-19112	NR_028358	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30C	CDC50C	transmembrane protein 30C	pseudo
chr2.1896195.-	chr2	1896195	1896196	-	0	NA	"intron (NM_015025, intron 14 of 24)"	"intron (NM_015025, intron 14 of 24)"	147904	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr17.21221840.-	chr17	21221840	21221841	-	0	NA	Intergenic	Intergenic	-30492	NM_002756	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
chr2.113642160.-	chr2	113642160	113642161	-	0	NA	Intergenic	AluJb|SINE|Alu	28388	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr18.11900714.-	chr18	11900714	11900715	-	0	NA	"intron (NM_001242904, intron 1 of 7)"	AluY|SINE|Alu	-8082	NM_001242904	65258	Hs.734268	NM_138608	ENSG00000154889	MPPE1	PGAP5	metallophosphoesterase 1	protein-coding
chr2.43997075.+	chr2	43997075	43997076	+	0	NA	Intergenic	AluY|SINE|Alu	-4103	NM_016008	51626	Hs.371597	NM_001012665	ENSG00000138036	DYNC2LI1	D2LIC|LIC3	"dynein, cytoplasmic 2, light intermediate chain 1"	protein-coding
chr2.48010444.+	chr2	48010444	48010445	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	223	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chrX.86721017.-	chrX	86721017	86721018	-	0	NA	Intergenic	SVA_C|Other|Other	51698	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr22.30647247.+	chr22	30647247	30647248	+	0	NA	Intergenic	Intergenic	-4407	NM_002309	3976	Hs.2250	NM_001257135	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
chr2.231536956.-	chr2	231536956	231536957	-	0	NA	Intergenic	AluY|SINE|Alu	-28288	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LOC151475	-	uncharacterized LOC151475	miscRNA
chr5.37382622.+	chr5	37382622	37382623	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3210	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr2.905551.+	chr2	905551	905552	+	0	NA	Intergenic	Intergenic	-41003	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chrX.153736348.+	chrX	153736348	153736349	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8218	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr16.27960119.+	chr16	27960119	27960120	+	0	NA	"intron (NM_001109763, intron 2 of 6)"	AluY|SINE|Alu	-60641	NM_144675	146395	Hs.91910	NM_001109763	ENSG00000169181	GSG1L	PRO19651	GSG1-like	protein-coding
chr5.57859509.-	chr5	57859509	57859510	-	0	NA	Intergenic	SVA_A|Other|Other	19430	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr4.1400166.-	chr4	1400166	1400167	-	0	NA	Intergenic	CpG	-14826	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr5.36855778.-	chr5	36855778	36855779	-	0	NA	Intergenic	AluSx|SINE|Alu	-21018	NR_046262	646719	Hs.355684	NR_046262		LOC646719	-	uncharacterized LOC646719	miscRNA
chr8.101595054.-	chr8	101595054	101595055	-	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	23040	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chrX.103014805.-	chrX	103014805	103014806	-	0	NA	Intergenic	AluY|SINE|Alu	16634	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr11.2813150.+	chr11	2813150	2813151	+	0	NA	"intron (NR_040711, intron 15 of 15)"	CpG	-78113	NR_024627	55539	Hs.127821	NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor (non-protein coding)	miscRNA
chr1.32122133.-	chr1	32122133	32122134	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11295	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr16.89626852.-	chr16	89626852	89626853	-	0	NA	promoter-TSS (NM_000977)	promoter-TSS (NM_000977)	213	NM_001243131	6137	Hs.410817	NM_000977		RPL13	BBC1|D16S444E|D16S44E|L13	ribosomal protein L13	protein-coding
chr20.49424648.+	chr20	49424648	49424649	+	0	NA	"intron (NM_001010974, intron 1 of 3)"	AluY|SINE|Alu	13181	NM_001010974	55653	Hs.381178	NM_001010974	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
chr7.75947418.+	chr7	75947418	75947419	+	0	NA	Intergenic	CpG	15543	NM_001540	3315	Hs.520973	NM_001540	ENSG00000106211	HSPB1	CMT2F|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock 27kDa protein 1	protein-coding
chr12.116724225.+	chr12	116724225	116724226	+	0	NA	Intergenic	AluY|SINE|Alu	-9234	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr3.184287424.+	chr3	184287424	184287425	+	0	NA	"intron (NM_004443, intron 1 of 15)"	"intron (NM_004443, intron 1 of 15)"	7837	NM_004443	2049	Hs.2913	NM_004443	ENSG00000182580	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
chr17.79215663.-	chr17	79215663	79215664	-	0	NA	TTS (NM_001086521)	TTS (NM_001086521)	-2552	NM_001086521	284184	Hs.356545	NM_001086521	ENSG00000224877	C17orf89	-	chromosome 17 open reading frame 89	protein-coding
chr16.31103204.+	chr16	31103204	31103205	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	3072	NM_206824	79001	Hs.324844	NM_024006	ENSG00000167397	VKORC1	EDTP308|IMAGE3455200|MST134|MST576|VKCFD2|VKOR	"vitamin K epoxide reductase complex, subunit 1"	protein-coding
chr2.101959031.+	chr2	101959031	101959032	+	0	NA	Intergenic	Intergenic	33119	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	miscRNA
chr15.63892664.-	chr15	63892664	63892665	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-362	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chrX.133643950.+	chrX	133643950	133643951	+	0	NA	Intergenic	L1PA10|LINE|L1	30342	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr13.111268071.-	chr13	111268071	111268072	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-140	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr16.58021563.+	chr16	58021563	58021564	+	0	NA	"3' UTR (NM_199456, exon 8 of 8)"	"3' UTR (NM_199456, exon 8 of 8)"	11224	NM_199456	374739	Hs.132976	NM_199046		TEPP	-	"testis, prostate and placenta expressed"	protein-coding
chr7.44327888.+	chr7	44327888	44327889	+	0	NA	"intron (NM_172079, intron 1 of 19)"	"intron (NM_172079, intron 1 of 19)"	37342	NM_172079	816	Hs.351887	NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB	calcium/calmodulin-dependent protein kinase II beta	protein-coding
chr2.236999668.+	chr2	236999668	236999669	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	76984	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.100106872.+	chr2	100106872	100106873	+	0	NA	promoter-TSS (NM_016316)	promoter-TSS (NM_016316)	-392	NM_001037872	51455	Hs.443077	NM_001037872	ENSG00000135945	REV1	REV1L	"REV1, polymerase (DNA directed)"	protein-coding
chr7.130728514.+	chr7	130728514	130728515	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63275	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr2.161305728.-	chr2	161305728	161305729	-	0	NA	"intron (NM_016836, intron 1 of 13)"	SVA_B|Other|Other	41335	NR_039946	100616364		NR_039946		MIR4785	-	microRNA 4785	miscRNA
chr18.76694292.-	chr18	76694292	76694293	-	0	NA	Intergenic	Intergenic	45983	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chrM.12805.-	chrM	12805	12806	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.71357883.-	chr2	71357883	71357884	-	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-439	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr7.26216467.-	chr7	26216467	26216468	-	0	NA	"intron (NM_004289, intron 1 of 3)"	SVA_A|Other|Other	-23946	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
chr20.57575054.-	chr20	57575054	57575055	-	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	-7255	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr17.45349577.+	chr17	45349577	45349578	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18369	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr20.5213536.+	chr20	5213536	5213537	+	0	NA	Intergenic	AluJr4|SINE|Alu	81479	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr2.76117592.-	chr2	76117592	76117593	-	0	NA	Intergenic	AluY|SINE|Alu	179481	NM_001201335	6936	Hs.710597	NM_001201334	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
chr2.48776710.-	chr2	48776710	48776711	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	-19402	NM_006873	11037	Hs.736128	NM_001198595	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
chr7.55086883.-	chr7	55086883	55086884	-	0	NA	"5' UTR (NM_005228, exon 1 of 28)"	"5' UTR (NM_005228, exon 1 of 28)"	-158	NM_005228	1956	Hs.488293	NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
chr2.204121213.-	chr2	204121213	204121214	-	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	-18049	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr8.56758306.-	chr8	56758306	56758307	-	0	NA	Intergenic	AluSx3|SINE|Alu	34080	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr21.44480054.+	chr21	44480054	44480055	+	0	NA	"intron (NM_000071, intron 12 of 16)"	"intron (NM_000071, intron 12 of 16)"	15986	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr16.48657318.-	chr16	48657318	48657319	-	0	NA	Intergenic	Intergenic	13198	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
chr19.21789935.-	chr19	21789935	21789936	-	0	NA	Intergenic	SVA_D|Other|Other	-101498	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr17.78978001.+	chr17	78978001	78978002	+	0	NA	Intergenic	CpG	12360	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr22.43718273.+	chr22	43718273	43718274	+	0	NA	"intron (NM_173050, intron 2 of 21)"	AluSc8|SINE|Alu	21121	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr17.29335471.-	chr17	29335471	29335472	-	0	NA	Intergenic	CpG	-33118	NR_002221	503645	Hs.683578	NR_002221		DPRXP4	-	divergent-paired related homeobox pseudogene 4	pseudo
chr4.989214.-	chr4	989214	989215	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1990	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr17.21027208.+	chr17	21027208	21027209	+	0	NA	Intergenic	AluSc|SINE|Alu	-3033	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr19.38836214.+	chr19	38836214	38836215	+	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	9771	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr12.110821860.-	chr12	110821860	110821861	-	0	NA	"intron (NM_016238, intron 6 of 10)"	AluSg4|SINE|Alu	-19675	NM_001137664	51434	Hs.719935	NM_001137664	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
chr19.12995796.+	chr19	12995796	12995797	+	0	NA	"exon (NM_006563, exon 3 of 3)"	"exon (NM_006563, exon 3 of 3)"	2221	NM_006563	10661	Hs.37860	NM_006563	ENSG00000105610	KLF1	EKLF|HBFQTL6|INLU	Kruppel-like factor 1 (erythroid)	protein-coding
chr16.3203788.+	chr16	3203788	3203789	+	0	NA	Intergenic	AluSg|SINE|Alu	18654	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr14.105134384.+	chr14	105134384	105134385	+	0	NA	Intergenic	AluSz|SINE|Alu	9702	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr2.65564005.-	chr2	65564005	65564006	-	0	NA	"intron (NM_001128210, intron 2 of 5)"	AluY|SINE|Alu	-29926	NM_001128210	200734	Hs.59332	NM_001128210	ENSG00000198369	SPRED2	Spred-2	"sprouty-related, EVH1 domain containing 2"	protein-coding
chr6.160985690.-	chr6	160985690	160985691	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53534	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr19.10400068.-	chr19	10400068	10400069	-	0	NA	promoter-TSS (NM_003259)	promoter-TSS (NM_003259)	587	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr2.229496727.-	chr2	229496727	229496728	-	0	NA	Intergenic	AluYc|SINE|Alu	450366	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr15.59685725.-	chr15	59685725	59685726	-	0	NA	Intergenic	AluSg4|SINE|Alu	20654	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
chr2.114361283.+	chr2	114361283	114361284	+	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	11	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr8.26532463.-	chr8	26532463	26532464	-	0	NA	Intergenic	AluSp|SINE|Alu	-96542	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr17.72203149.-	chr17	72203149	72203150	-	0	NA	"intron (NM_001035258, intron 3 of 4)"	AluY|SINE|Alu	-3354	NM_001035258	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr14.55349829.+	chr14	55349829	55349830	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-4918	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr18.57476956.+	chr18	57476956	57476957	+	0	NA	Intergenic	AluSz|SINE|Alu	-90236	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
chrX.133643948.+	chrX	133643948	133643949	+	0	NA	Intergenic	L1PA10|LINE|L1	30344	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr17.68536095.+	chr17	68536095	68536096	+	0	NA	Intergenic	AluSx3|SINE|Alu	370419	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	"potassium inwardly-rectifying channel, subfamily J, member 2"	protein-coding
chr19.18180376.-	chr19	18180376	18180377	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17321	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr6.55775043.+	chr6	55775043	55775044	+	0	NA	Intergenic	SVA_D|Other|Other	-34668	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr5.1770156.-	chr5	1770156	1770157	-	0	NA	Intergenic	L1MB5|LINE|L1	-29800	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr5.22207070.+	chr5	22207070	22207071	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64609	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr6.12012475.+	chr6	12012475	12012476	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-249	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr2.47660752.+	chr2	47660752	47660753	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30546	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr6.123144120.-	chr6	123144120	123144121	-	0	NA	Intergenic	AluY|SINE|Alu	-34149	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr3.183052335.-	chr3	183052335	183052336	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81303	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr10.133869272.-	chr10	133869272	133869273	-	0	NA	Intergenic	Intergenic	49041	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr6.168209546.-	chr6	168209546	168209547	-	0	NA	Intergenic	AluSq|SINE|Alu	12007	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr7.5257628.+	chr7	5257628	5257629	+	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	3728	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr2.68870575.+	chr2	68870575	68870576	+	0	NA	Intergenic	CpG	-2379	NM_138964	10887	Hs.683430	NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PKR1|ZAQ	prokineticin receptor 1	protein-coding
chr3.164119715.-	chr3	164119715	164119716	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676568	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr13.114929687.-	chr13	114929687	114929688	-	0	NA	Intergenic	Intergenic	31592	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr19.11068042.+	chr19	11068042	11068043	+	0	NA	Intergenic	AluSp|SINE|Alu	-3556	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr5.10577299.-	chr5	10577299	10577300	-	0	NA	"intron (NM_001164440, intron 1 of 3)"	AluSq2|SINE|Alu	-12864	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chrX.46794135.-	chrX	46794135	46794136	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22267	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr9.8857447.-	chr9	8857447	8857448	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123501	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.79749328.+	chr1	79749328	79749329	+	0	NA	Intergenic	AluSx|SINE|Alu	-276833	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr12.31575360.+	chr12	31575360	31575361	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96201	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr8.27509121.-	chr8	27509121	27509122	-	0	NA	"exon (NM_182826, exon 3 of 6)"	"exon (NM_182826, exon 3 of 6)"	-17544	NM_016240	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	"scavenger receptor class A, member 3"	protein-coding
chr4.1721015.+	chr4	1721015	1721016	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	2069	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr12.49856909.-	chr12	49856909	49856910	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73952	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr3.177077680.-	chr3	177077680	177077681	-	0	NA	Intergenic	Intergenic	82029	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	miscRNA
chr7.5396373.+	chr7	5396373	5396374	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66804	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr7.148762041.-	chr7	148762041	148762042	-	0	NA	Intergenic	Intergenic	-25828	NM_152411	136051	Hs.729572	NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
chr1.212898502.+	chr1	212898502	212898503	+	0	NA	TTS (NM_001042549)	TTS (NM_001042549)	-25175	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr19.34074912.+	chr19	34074912	34074913	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-37949	NM_001127895	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr1.25524807.+	chr1	25524807	25524808	+	0	NA	Intergenic	Intergenic	34206	NM_015484	25949	Hs.20013	NM_015484		SYF2	CBPIN|NTC31|P29|fSAP29	"SYF2 homolog, RNA splicing factor (S. cerevisiae)"	protein-coding
chr16.30064606.+	chr16	30064606	30064607	+	0	NA	"intron (NM_000034, intron 1 of 13)"	CpG	195	NM_000034	226	Hs.732822	NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12	"aldolase A, fructose-bisphosphate"	protein-coding
chr11.65563860.+	chr11	65563860	65563861	+	0	NA	"3' UTR (NM_004561, exon 4 of 4)"	"3' UTR (NM_004561, exon 4 of 4)"	9355	NM_004561	5017	Hs.134434	NM_004561	ENSG00000172818	OVOL1	HOVO1	ovo-like 1(Drosophila)	protein-coding
chr1.32122112.-	chr1	32122112	32122113	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11274	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr7.100963639.+	chr7	100963639	100963640	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1454	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr12.124873577.-	chr12	124873577	124873578	-	0	NA	"intron (NM_001206654, intron 18 of 47)"	CpG	-99867	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	FAM101A	-	"family with sequence similarity 101, member A"	protein-coding
chr16.78282856.+	chr16	78282856	78282857	+	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	149529	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr1.113336819.+	chr1	113336819	113336820	+	0	NA	Intergenic	MER70B|LTR|ERVL	73630	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr12.19282517.+	chr12	19282517	19282518	+	0	NA	promoter-TSS (NM_001256470)	promoter-TSS (NM_001256470)	-109	NM_019012	54477	Hs.188614	NM_001143821	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	"pleckstrin homology domain containing, family A member 5"	protein-coding
chr9.130734362.-	chr9	130734362	130734363	-	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	-8450	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr1.27876460.-	chr1	27876460	27876461	-	0	NA	"exon (NM_001029882, exon 6 of 7)"	"exon (NM_001029882, exon 6 of 7)"	-53683	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	CL23945|DJ159A19.3|RP1-159A19.1	"AT hook, DNA binding motif, containing 1"	protein-coding
chr1.24513571.+	chr1	24513571	24513572	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	194	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr5.35150191.-	chr5	35150191	35150192	-	0	NA	"intron (NM_000949, intron 1 of 9)"	AluSp|SINE|Alu	31967	NM_001204314	5618	Hs.602914	NM_000949	ENSG00000113494	PRLR	hPRLrI	prolactin receptor	protein-coding
chr8.144512830.+	chr8	144512830	144512831	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-228	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr11.27820575.+	chr11	27820575	27820576	+	0	NA	Intergenic	AluSc|SINE|Alu	-76970	NM_170731	627	Hs.502182	NM_001143805	ENSG00000176697	BDNF	ANON2|BULN2	brain-derived neurotrophic factor	protein-coding
chr18.2888605.-	chr18	2888605	2888606	-	0	NA	"intron (NM_032048, intron 3 of 7)"	AluY|SINE|Alu	-41577	NM_032048	84034	Hs.532815	NM_032048		EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
chr7.1542273.+	chr7	1542273	1542274	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1745	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr13.21872283.-	chr13	21872283	21872284	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-19	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr3.131447475.-	chr3	131447475	131447476	-	0	NA	"intron (NM_130808, intron 2 of 15)"	AluY|SINE|Alu	225615	NM_007208	11222	Hs.205163	NM_007208	ENSG00000114686	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
chr9.134449885.-	chr9	134449885	134449886	-	0	NA	Intergenic	AluSx1|SINE|Alu	43223	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr16.58021564.+	chr16	58021564	58021565	+	0	NA	"3' UTR (NM_199456, exon 8 of 8)"	"3' UTR (NM_199456, exon 8 of 8)"	11225	NM_199456	374739	Hs.132976	NM_199046		TEPP	-	"testis, prostate and placenta expressed"	protein-coding
chr9.10786971.+	chr9	10786971	10786972	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174248	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr21.45566093.-	chr21	45566093	45566094	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12599	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr1.9669059.-	chr1	9669059	9669060	-	0	NA	"intron (NM_001130924, intron 7 of 10)"	"intron (NM_001130924, intron 7 of 10)"	-20127	NM_001010866	199953	Hs.706017	NM_001010866	ENSG00000188807	TMEM201	NET5	transmembrane protein 201	protein-coding
chrX.133639191.+	chrX	133639191	133639192	+	0	NA	Intergenic	AluSx|SINE|Alu	35101	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr2.240371798.+	chr2	240371798	240371799	+	0	NA	Intergenic	SVA_D|Other|Other	-49155	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr12.8830943.-	chr12	8830943	8830944	-	0	NA	Intergenic	AluSp|SINE|Alu	15510	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr6.166722204.+	chr6	166722204	166722205	+	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	-333	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr3.49368441.+	chr3	49368441	49368442	+	0	NA	"intron (NM_001251877, intron 2 of 6)"	AluY|SINE|Alu	9095	NM_001251877	7375	Hs.403828	NM_001251877	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
chr9.11197015.-	chr9	11197015	11197016	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584292	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr10.28821808.+	chr10	28821808	28821809	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	386	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr13.31307194.-	chr13	31307194	31307195	-	0	NA	"intron (NM_001204406, intron 1 of 5)"	AluY|SINE|Alu	2451	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
chr3.81354238.+	chr3	81354238	81354239	+	0	NA	Intergenic	AluY|SINE|Alu	456712	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr5.114712363.-	chr5	114712363	114712364	-	0	NA	Intergenic	MIRb|SINE|MIR	79905	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr5.68477052.-	chr5	68477052	68477053	-	0	NA	Intergenic	AluY|SINE|Alu	8323	NM_022909	64946	Hs.631967	NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
chr3.126207340.-	chr3	126207340	126207341	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12578	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr20.5776628.+	chr20	5776628	5776629	+	0	NA	"intron (NM_152504, intron 2 of 2)"	AluY|SINE|Alu	45585	NM_152504	149840	Hs.529340	NM_152504	ENSG00000171984	C20orf196	-	chromosome 20 open reading frame 196	protein-coding
chrX.118871968.-	chrX	118871968	118871969	-	0	NA	Intergenic	AluYc|SINE|Alu	20608	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr2.36958577.+	chr2	36958577	36958578	+	0	NA	"intron (NM_053276, intron 3 of 15)"	AluSc|SINE|Alu	34744	NM_001177969	5212	Hs.137415	NM_001177969	ENSG00000205221	VIT	-	vitrin	protein-coding
chr1.109995552.+	chr1	109995552	109995553	+	0	NA	Intergenic	AluY|SINE|Alu	-13548	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr8.30242581.-	chr8	30242581	30242582	-	0	NA	"5' UTR (NM_006867, exon 1 of 10)"	"5' UTR (NM_006867, exon 1 of 10)"	-336	NR_046205	100128750	Hs.126813	NR_046205	ENSG00000254109	LOC100128750	-	uncharacterized LOC100128750	miscRNA
chr2.122878810.+	chr2	122878810	122878811	+	0	NA	Intergenic	AluY|SINE|Alu	365689	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr15.83365842.-	chr15	83365842	83365843	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12793	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr17.76257550.-	chr17	76257550	76257551	-	0	NA	"non-coding (NR_073178, exon 7 of 7)"	"non-coding (NR_073178, exon 7 of 7)"	-17023	NR_073178	100996291	Hs.744493	NR_073178	ENSG00000204277	LOC100996291	-	uncharacterized LOC100996291	miscRNA
chr2.81982173.+	chr2	81982173	81982174	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101754	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr7.73149756.-	chr7	73149756	73149757	-	0	NA	TTS (NR_026910)	TTS (NR_026910)	-357	NR_026690	171022	Hs.650513	NR_026690	ENSG00000225969	LINC00035	ABHD11-AS1|NCRNA00035|WBSCR26	long intergenic non-protein coding RNA 35	miscRNA
chr18.6015706.+	chr18	6015706	6015707	+	0	NA	"intron (NM_173464, intron 17 of 19)"	AluSc8|SINE|Alu	-123603	NM_001080209	645369	Hs.346566	NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
chr9.120507357.+	chr9	120507357	120507358	+	0	NA	Intergenic	CpG	40904	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr16.924590.+	chr16	924590	924591	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69147	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr16.3203720.+	chr16	3203720	3203721	+	0	NA	Intergenic	AluSg|SINE|Alu	18586	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chrX.19862932.-	chrX	19862932	19862933	-	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	-42812	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr22.46510047.-	chr22	46510047	46510048	-	0	NA	TTS (NR_027033)	TTS (NR_027033)	-481	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr15.57211897.-	chr15	57211897	57211898	-	0	NA	"intron (NM_207036, intron 1 of 20)"	CpG	-1064	NM_207038	6938	Hs.511504	NM_003205	ENSG00000140262	TCF12	HEB|HTF4|HsT17266|bHLHb20	transcription factor 12	protein-coding
chr3.30575170.-	chr3	30575170	30575171	-	0	NA	Intergenic	AluY|SINE|Alu	72824	NM_001024847	7048	Hs.604277	NM_001024847	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	"transforming growth factor, beta receptor II (70/80kDa)"	protein-coding
chr3.183052339.-	chr3	183052339	183052340	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81307	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr14.23517052.+	chr14	23517052	23517053	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5676	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr15.29130782.+	chr15	29130782	29130783	+	0	NA	Intergenic	CpG	-36961	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr16.71647930.-	chr16	71647930	71647931	-	0	NA	Intergenic	AluSz|SINE|Alu	12126	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr12.121338267.-	chr12	121338267	121338268	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	-3888	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr17.78271319.+	chr17	78271319	78271320	+	0	NA	"intron (NM_001256071, intron 10 of 67)"	AluY|SINE|Alu	36659	NM_020954	57674	Hs.743310	NM_001256071	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
chr1.33168193.-	chr1	33168193	33168194	-	0	NA	"intron (NM_030786, intron 1 of 4)"	CpG	-168	NM_001161708	81493	Hs.712631	NM_001161708	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	"syncoilin, intermediate filament protein"	protein-coding
chrX.42939957.-	chrX	42939957	42939958	-	0	NA	Intergenic	AluSx|SINE|Alu	302471	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr19.47364566.-	chr19	47364566	47364567	-	0	NA	Intergenic	Intergenic	10363	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr9.137722597.+	chr9	137722597	137722598	+	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	18618	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr20.62060468.-	chr20	62060468	62060469	-	0	NA	"intron (NM_004518, intron 8 of 14)"	"intron (NM_004518, intron 8 of 14)"	-43525	NM_004518	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr2.7148572.+	chr2	7148572	7148573	+	0	NA	"intron (NM_014746, intron 3 of 8)"	"intron (NM_014746, intron 3 of 8)"	-89759	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	miscRNA
chr8.126417241.+	chr8	126417241	126417242	+	0	NA	Intergenic	Intergenic	-25322	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr7.12751303.+	chr7	12751303	12751304	+	0	NA	Intergenic	AluY|SINE|Alu	24392	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr8.90586397.-	chr8	90586397	90586398	-	0	NA	Intergenic	AluY|SINE|Alu	183578	NM_003821	8767	Hs.103755	NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor-interacting serine-threonine kinase 2	protein-coding
chr2.25758519.+	chr2	25758519	25758520	+	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	114572	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr2.10405893.+	chr2	10405893	10405894	+	0	NA	Intergenic	Intergenic	-37137	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr1.45068605.-	chr1	45068605	45068606	-	0	NA	"intron (NM_018150, intron 2 of 14)"	"intron (NM_018150, intron 2 of 14)"	-57440	NR_049849	100847089		NR_049849		MIR5584	-	microRNA 5584	miscRNA
chr4.163164030.-	chr4	163164030	163164031	-	0	NA	Intergenic	AluY|SINE|Alu	78844	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr1.6051446.-	chr1	6051446	6051447	-	0	NA	promoter-TSS (NM_001199861)	promoter-TSS (NM_001199861)	912	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr18.43686718.-	chr18	43686718	43686719	-	0	NA	"intron (NR_026978, intron 2 of 8)"	AluSz|SINE|Alu	-2420	NR_026978	115106	Hs.436617	NM_138443	ENSG00000152240	HAUS1	CCDC5|HEI-C|HEIC|HsT1461	"HAUS augmin-like complex, subunit 1"	protein-coding
chr7.130332851.-	chr7	130332851	130332852	-	0	NA	"intron (NM_012133, intron 5 of 12)"	AluSc8|SINE|Alu	-20747	NM_012133	26958	Hs.6421	NM_012133		COPG2	2-COP	"coatomer protein complex, subunit gamma 2"	protein-coding
chr2.213402716.+	chr2	213402716	213402717	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	636	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr1.27503556.+	chr1	27503556	27503557	+	0	NA	Intergenic	Intergenic	-21935	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr20.46019539.+	chr20	46019539	46019540	+	0	NA	Intergenic	AluY|SINE|Alu	-34065	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr1.7690230.-	chr1	7690230	7690231	-	0	NA	"intron (NM_015215, intron 6 of 22)"	"intron (NM_015215, intron 6 of 22)"	141099	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr3.126207338.-	chr3	126207338	126207339	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12576	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr18.334941.-	chr18	334941	334942	-	0	NA	"exon (NM_130386, exon 6 of 10)"	"exon (NM_130386, exon 6 of 10)"	66882	NM_005131	9984	Hs.712543	NM_005131	ENSG00000079134	THOC1	HPR1|P84|P84N5	THO complex 1	protein-coding
chr8.123899480.-	chr8	123899480	123899481	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105579	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr1.117312745.-	chr1	117312745	117312746	-	0	NA	TTS (NM_001767)	TTS (NM_001767)	-15659	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr1.197418591.+	chr1	197418591	197418592	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181257	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr3.164119670.+	chr3	164119670	164119671	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676613	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr12.120754006.-	chr12	120754006	120754007	-	0	NA	Intergenic	AluSx1|SINE|Alu	-11586	NM_000928	5319	Hs.992	NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	"phospholipase A2, group IB (pancreas)"	protein-coding
chr2.111877297.+	chr2	111877297	111877298	+	0	NA	Intergenic	CpG	-1194	NM_138622	10018	Hs.737004	NM_001204106	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2-like 11 (apoptosis facilitator)	protein-coding
chr9.72101700.-	chr9	72101700	72101701	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157459	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr12.6664763.-	chr12	6664763	6664764	-	0	NA	"exon (NM_001039670, exon 1 of 10)"	"exon (NM_001039670, exon 1 of 10)"	-486	NM_080730	25900	Hs.15243	NM_001039670	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
chr16.89034221.-	chr16	89034221	89034222	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9283	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr18.2377834.-	chr18	2377834	2377835	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193655	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr7.1474529.+	chr7	1474529	1474530	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24580	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr13.99373203.-	chr13	99373203	99373204	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31726	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr1.28844778.+	chr1	28844778	28844779	+	0	NA	promoter-TSS (NM_001048194)	promoter-TSS (NM_001048194)	33	NM_001048195	1104	Hs.469723	NM_001048194	ENSG00000180198	RCC1	CHC1|RCC1-I|SNHG3-RCC1	regulator of chromosome condensation 1	protein-coding
chr1.46016437.+	chr1	46016437	46016438	+	0	NA	promoter-TSS (NM_001202413)	promoter-TSS (NM_001202413)	-18	NM_006066	10327	Hs.721160	NM_001202414	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3	"aldo-keto reductase family 1, member A1 (aldehyde reductase)"	protein-coding
chr9.134515593.+	chr9	134515593	134515594	+	0	NA	"intron (NM_198679, intron 4 of 23)"	"intron (NM_198679, intron 4 of 23)"	69636	NM_198679	2889	Hs.127897	NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
chr3.112808060.-	chr3	112808060	112808061	-	0	NA	Intergenic	AluYc|SINE|Alu	69505	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr5.154071093.+	chr5	154071093	154071094	+	0	NA	Intergenic	Intergenic	-21369	NM_015315	23367	Hs.292078	NM_033551	ENSG00000155506	LARP1	LARP	"La ribonucleoprotein domain family, member 1"	protein-coding
chr8.23539890.+	chr8	23539890	23539891	+	0	NA	"intron (NM_001256339, intron 2 of 2)"	CpG	512	NM_001256339	4824	Hs.55999	NM_001256339	ENSG00000167034	NKX3-1	BAPX2|NKX3|NKX3.1|NKX3A	NK3 homeobox 1	protein-coding
chr18.60740371.+	chr18	60740371	60740372	+	0	NA	Intergenic	AluYb8|SINE|Alu	246242	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr7.1286204.-	chr7	1286204	1286205	-	0	NA	Intergenic	CpG	-13550	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr20.34204249.+	chr20	34204249	34204250	+	0	NA	"intron (NM_003116, intron 1 of 11)"	CpG	440	NM_003116	6676	Hs.123159	NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
chr8.143373436.+	chr8	143373436	143373437	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93719	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chrX.53808311.-	chrX	53808311	53808312	-	0	NA	Intergenic	AluYb8|SINE|Alu	94614	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr14.83280571.-	chr14	83280571	83280572	-	0	NA	Intergenic	SVA_D|Other|Other	1280366	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr22.18532543.+	chr22	18532543	18532544	+	0	NA	Intergenic	AluSx1|SINE|Alu	20392	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr9.135013583.-	chr9	135013583	135013584	-	0	NA	Intergenic	AluSz|SINE|Alu	23751	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr6.168352162.+	chr6	168352162	168352163	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25457	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr1.32679304.+	chr1	32679304	32679305	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4609	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr19.13741894.-	chr19	13741894	13741895	-	0	NA	Intergenic	AluSc8|SINE|Alu	116859	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr2.43253935.+	chr2	43253935	43253936	+	0	NA	Intergenic	Intergenic	199810	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr6.74964948.+	chr6	74964948	74964949	+	0	NA	Intergenic	SVA_C|Other|Other	559434	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr2.224599741.-	chr2	224599741	224599742	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102578	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr19.23474377.-	chr19	23474377	23474378	-	0	NA	Intergenic	AluSx|SINE|Alu	41205	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr6.2221742.+	chr6	2221742	2221743	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24126	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chrX.133565033.-	chrX	133565033	133565034	-	0	NA	Intergenic	AluSp|SINE|Alu	29142	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr7.1147479.+	chr7	1147479	1147480	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19756	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr3.141497100.-	chr3	141497100	141497101	-	0	NA	promoter-TSS (NM_139209)	promoter-TSS (NM_139209)	-57	NM_139209	131890	Hs.680654	NM_139209		GRK7	GPRK7	G protein-coupled receptor kinase 7	protein-coding
chrX.133565024.+	chrX	133565024	133565025	+	0	NA	Intergenic	AluSp|SINE|Alu	-29151	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr3.72837199.+	chr3	72837199	72837200	+	0	NA	"intron (NM_018130, intron 10 of 10)"	SVA_B|Other|Other	60399	NM_018130	55164	Hs.606584	NM_018130	ENSG00000144736	SHQ1	Shq1p	"SHQ1, H/ACA ribonucleoprotein assembly factor"	protein-coding
chr6.21206329.+	chr6	21206329	21206330	+	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	-387643	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr17.4488405.+	chr17	4488405	4488406	+	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	571	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr8.27695258.+	chr8	27695258	27695259	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	91	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chrX.24206030.+	chrX	24206030	24206031	+	0	NA	"intron (NM_001178084, intron 3 of 7)"	AluSg|SINE|Alu	38176	NM_003410	7543	Hs.336681	NM_001178084	ENSG00000005889	ZFX	ZNF926	"zinc finger protein, X-linked"	protein-coding
chr1.244999231.-	chr1	244999231	244999232	-	0	NA	"intron (NM_198076, intron 1 of 3)"	"intron (NM_198076, intron 1 of 3)"	-592	NM_198076	116228	Hs.411490	NM_198076	ENSG00000203667	COX20	FAM36A	COX20 Cox2 chaperone homolog (S. cerevisiae)	protein-coding
chr20.39978554.+	chr20	39978554	39978555	+	0	NA	"intron (NM_022896, intron 6 of 19)"	"intron (NM_022896, intron 6 of 19)"	8994	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr20.61604906.-	chr20	61604906	61604907	-	0	NA	Intergenic	Intergenic	-20907	NM_022082	63910	Hs.512686	NM_022082	ENSG00000101194	SLC17A9	C20orf59	"solute carrier family 17, member 9"	protein-coding
chr12.46411947.-	chr12	46411947	46411948	-	0	NA	Intergenic	LTR12C|LTR|ERV1	27546	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr19.9311209.+	chr19	9311209	9311210	+	0	NA	Intergenic	AluSc8|SINE|Alu	14338	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr17.18785230.+	chr17	18785230	18785231	+	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	16448	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr2.68031701.+	chr2	68031701	68031702	+	0	NA	Intergenic	AluY|SINE|Alu	258458	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr10.94333612.+	chr10	94333612	94333613	+	0	NA	"intron (NM_004969, intron 1 of 24)"	CpG	240	NM_004969	3416	Hs.500546	NM_001165946	ENSG00000119912	IDE	INSULYSIN	insulin-degrading enzyme	protein-coding
chr2.25758475.+	chr2	25758475	25758476	+	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	114616	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr14.103698343.-	chr14	103698343	103698344	-	0	NA	Intergenic	Intergenic	42978	NR_033938	100131366	Hs.147881	NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	miscRNA
chr8.104115246.+	chr8	104115246	104115247	+	0	NA	Intergenic	AluSp|SINE|Alu	-37675	NM_024812	79870	Hs.533446	NM_001024372	ENSG00000164929	BAALC	-	"brain and acute leukemia, cytoplasmic"	protein-coding
chr6.123144084.-	chr6	123144084	123144085	-	0	NA	Intergenic	AluY|SINE|Alu	-34113	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr9.133799176.-	chr9	133799176	133799177	-	0	NA	"exon (NM_001145106, exon 5 of 8)"	"exon (NM_001145106, exon 5 of 8)"	-15063	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr7.5583853.-	chr7	5583853	5583854	-	0	NA	Intergenic	AluY|SINE|Alu	13621	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr10.133203439.-	chr10	133203439	133203440	-	0	NA	Intergenic	Intergenic	93455	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr3.16159922.+	chr3	16159922	16159923	+	0	NA	Intergenic	AluSx|SINE|Alu	-56262	NM_054110	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNT13|GALNT7|GALNTL2|PIH5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chr1.32122093.+	chr1	32122093	32122094	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11255	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr18.76189763.+	chr18	76189763	76189764	+	0	NA	Intergenic	CpG	-550512	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chrX.18849793.+	chrX	18849793	18849794	+	0	NA	Intergenic	AluY|SINE|Alu	-58621	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr3.31533140.+	chr3	31533140	31533141	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41351	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr4.17439850.+	chr4	17439850	17439851	+	0	NA	Intergenic	AluSg|SINE|Alu	74007	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr7.63023276.-	chr7	63023276	63023277	-	0	NA	Intergenic	Intergenic	58192	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr7.38566161.+	chr7	38566161	38566162	+	0	NA	"intron (NM_139316, intron 2 of 19)"	AluSz6|SINE|Alu	105006	NM_139316	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
chr2.166334149.-	chr2	166334149	166334150	-	0	NA	"intron (NM_001172173, intron 1 of 6)"	AluSx|SINE|Alu	-7992	NM_001172173	80034	Hs.470479	NM_001172173	ENSG00000178662	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine-serine-rich nuclear protein 3	protein-coding
chr2.241363387.+	chr2	241363387	241363388	+	0	NA	Intergenic	Intergenic	-11728	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr9.8858127.+	chr9	8858127	8858128	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124181	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.130728499.+	chr7	130728499	130728500	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63290	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr9.34329548.+	chr9	34329548	34329549	+	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	44	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr4.1626646.+	chr4	1626646	1626647	+	0	NA	Intergenic	CpG	59072	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr9.66486351.+	chr9	66486351	66486352	+	0	NA	Intergenic	Intergenic	-7918	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr19.1252535.+	chr19	1252535	1252536	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	3983	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr16.31103093.+	chr16	31103093	31103094	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2963	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr5.91967025.-	chr5	91967025	91967026	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-939474	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr3.102973960.+	chr3	102973960	102973961	+	0	NA	Intergenic	SVA_D|Other|Other	820101	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr11.66970147.-	chr11	66970147	66970148	-	0	NA	"intron (NM_012308, intron 5 of 20)"	AluY|SINE|Alu	37359	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr1.101786699.+	chr1	101786699	101786700	+	0	NA	Intergenic	AluY|SINE|Alu	19752	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr16.632130.-	chr16	632130	632131	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7227	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr12.57177802.-	chr12	57177802	57177803	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20694	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr7.1570453.-	chr7	1570453	1570454	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-85	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr15.83631303.+	chr15	83631303	83631304	+	0	NA	Intergenic	AluSx|SINE|Alu	-9827	NM_199330	9455	Hs.578443	NM_004839	ENSG00000103942	HOMER2	ACPD|CPD|HOMER-2|VESL-2	homer homolog 2 (Drosophila)	protein-coding
chr14.101693716.-	chr14	101693716	101693717	-	0	NA	Intergenic	Intergenic	-157468	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr19.46181328.+	chr19	46181328	46181329	+	0	NA	"intron (NM_000164, intron 11 of 13)"	CpG	-3062	NR_037512	100500845		NR_037512		MIR642B	-	microRNA 642b	miscRNA
chr7.150812746.-	chr7	150812746	150812747	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28920	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr20.34266405.+	chr20	34266405	34266406	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13527	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr8.58122958.+	chr8	58122958	58122959	+	0	NA	Intergenic	MER50|LTR|ERV1	-8690	NR_038235	100507651	Hs.631151	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	miscRNA
chr6.170547781.-	chr6	170547781	170547782	-	0	NA	Intergenic	L2b|LINE|L2	-23876	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr17.80584139.+	chr17	80584139	80584140	+	0	NA	"intron (NM_019613, intron 4 of 9)"	AluSc|SINE|Alu	22272	NM_019613	56270	Hs.132161	NM_019613	ENSG00000141580	WDR45B	WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
chr6.7878972.-	chr6	7878972	7878973	-	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	-31338	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr19.267153.-	chr19	267153	267154	-	0	NA	Intergenic	CpG	-24016	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr12.69202199.+	chr12	69202199	69202200	+	0	NA	"5' UTR (NM_002392, exon 1 of 11)"	"5' UTR (NM_002392, exon 1 of 11)"	228	NM_002392	4193	Hs.733536	NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|hdm2	"MDM2 oncogene, E3 ubiquitin protein ligase"	protein-coding
chr15.90792630.-	chr15	90792630	90792631	-	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	134	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr9.107727127.-	chr9	107727127	107727128	-	0	NA	Intergenic	AluYa5|SINE|Alu	36600	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr8.41166049.+	chr8	41166049	41166050	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	941	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr7.810987.+	chr7	810987	810988	+	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	-43674	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr9.140944788.-	chr9	140944788	140944789	-	0	NA	"intron (NM_000718, intron 24 of 45)"	"intron (NM_000718, intron 24 of 45)"	99777	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr6.160210662.+	chr6	160210662	160210663	+	0	NA	promoter-TSS (NM_030752)	promoter-TSS (NM_030752)	73	NM_001008897	6950	Hs.363137	NM_001008897	ENSG00000120438	TCP1	CCT-alpha|CCT1|CCTa|D6S230E|TCP-1-alpha	t-complex 1	protein-coding
chr19.8424317.+	chr19	8424317	8424318	+	0	NA	Intergenic	Intergenic	-4694	NM_139314	51129	Hs.9613	NM_001039667	ENSG00000167772	ANGPTL4	ANGPTL2|ARP4|FIAF|HFARP|NL2|PGAR|pp1158	angiopoietin-like 4	protein-coding
chr10.134034409.+	chr10	134034409	134034410	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	33995	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr7.124427227.-	chr7	124427227	124427228	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3637	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chrX.53111670.-	chrX	53111670	53111671	-	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	-128	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.163468726.-	chr1	163468726	163468727	-	0	NA	Intergenic	SVA_A|Other|Other	-177003	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr16.3209010.-	chr16	3209010	3209011	-	0	NA	Intergenic	CpG	-23876	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr11.126081386.+	chr11	126081386	126081387	+	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	201	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr4.990995.+	chr4	990995	990996	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-3771	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr7.1084259.+	chr7	1084259	1084260	+	0	NA	"intron (NM_032350, intron 2 of 4)"	GC_rich|Low_complexity|Low_complexity	-12882	NM_138445	115330	Hs.718624	NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
chr14.102970762.-	chr14	102970762	102970763	-	0	NA	Intergenic	Intergenic	-5366	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr4.49332357.-	chr4	49332357	49332358	-	0	NA	Intergenic	ACRO1|Satellite|acro	-344092	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr17.7951741.-	chr17	7951741	7951742	-	0	NA	"exon (NM_001039131, exon 12 of 12)"	"exon (NM_001039131, exon 12 of 12)"	-9383	NM_001141	247	Hs.111256	NM_001039130	ENSG00000179593	ALOX15B	15-LOX-2	"arachidonate 15-lipoxygenase, type B"	protein-coding
chr8.70401956.-	chr8	70401956	70401957	-	0	NA	"intron (NM_001128204, intron 1 of 21)"	AluY|SINE|Alu	3072	NM_001128206	23213	Hs.409602	NM_001128204	ENSG00000137573	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
chr3.42947779.+	chr3	42947779	42947780	+	0	NA	"5' UTR (NM_001134656, exon 1 of 4)"	"5' UTR (NM_001134656, exon 1 of 4)"	121	NM_001134656	389114	Hs.720173	NM_001134656	ENSG00000182983	ZNF662	-	zinc finger protein 662	protein-coding
chr15.59370962.+	chr15	59370962	59370963	+	0	NA	"intron (NM_001270528, intron 7 of 13)"	AluSx1|SINE|Alu	-26322	NM_004701	9133	Hs.194698	NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
chr2.109308533.+	chr2	109308533	109308534	+	0	NA	Intergenic	AluY|SINE|Alu	-27404	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr10.5454604.+	chr10	5454604	5454605	+	0	NA	promoter-TSS (NM_001047160)	promoter-TSS (NM_001047160)	90	NM_001047160	10276	Hs.25155	NM_001047160	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
chr3.174240473.-	chr3	174240473	174240474	-	0	NA	Intergenic	AluY|SINE|Alu	336638	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr2.905574.-	chr2	905574	905575	-	0	NA	Intergenic	Intergenic	40980	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr11.120093172.+	chr11	120093172	120093173	+	0	NA	"intron (NM_178507, intron 1 of 3)"	AluSx|SINE|Alu	11425	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr11.41260590.-	chr11	41260590	41260591	-	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	-220596	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr12.34354005.-	chr12	34354005	34354006	-	0	NA	Intergenic	AluSz|SINE|Alu	-178789	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr15.29130783.+	chr15	29130783	29130784	+	0	NA	Intergenic	CpG	-36962	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr16.53656200.-	chr16	53656200	53656201	-	0	NA	"exon (NM_015272, exon 23 of 27)"	"exon (NM_015272, exon 23 of 27)"	-81571	NM_015272	23322	Hs.298382	NM_001127897	ENSG00000103494	RPGRIP1L	CORS3|FTM|JBTS7|MKS5|NPHP8	RPGRIP1-like	protein-coding
chr18.77627533.-	chr18	77627533	77627534	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3865	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr1.14834349.+	chr1	14834349	14834350	+	0	NA	Intergenic	AluYc|SINE|Alu	-90864	NM_015209	23254	Hs.368823	NM_001017999	ENSG00000189337	KAZN	KAZ	"kazrin, periplakin interacting protein"	protein-coding
chr11.31560735.-	chr11	31560735	31560736	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29438	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr10.64976217.+	chr10	64976217	64976218	+	0	NA	"intron (NM_004241, intron 2 of 22)"	AluY|SINE|Alu	52765	NM_004241	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	RP11-10C13.2|TRIP8	jumonji domain containing 1C	protein-coding
chr7.53587024.-	chr7	53587024	53587025	-	0	NA	Intergenic	AluY|SINE|Alu	-292600	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr2.242512517.-	chr2	242512517	242512518	-	0	NA	"3' UTR (NM_032515, exon 5 of 5)"	"3' UTR (NM_032515, exon 5 of 5)"	13959	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr22.24621463.+	chr22	24621463	24621464	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19647	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr16.89117861.+	chr16	89117861	89117862	+	0	NA	Intergenic	Intergenic	-42356	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr18.43751039.+	chr18	43751039	43751040	+	0	NA	Intergenic	AluSx|SINE|Alu	-2949	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr3.47744698.-	chr3	47744698	47744699	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78707	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr1.27394525.+	chr1	27394525	27394526	+	0	NA	Intergenic	AluY|SINE|Alu	-55192	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr20.43342000.-	chr20	43342000	43342001	-	0	NA	Intergenic	AluSx|SINE|Alu	1885	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr5.177936351.-	chr5	177936351	177936352	-	0	NA	"intron (NM_173465, intron 2 of 28)"	AluSg7|SINE|Alu	-81205	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr7.5355986.-	chr7	5355986	5355987	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33425	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr19.33557647.-	chr19	33557647	33557648	-	0	NA	Intergenic	Intergenic	1823	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr12.129892205.-	chr12	129892205	129892206	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496007	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr8.145770735.+	chr8	145770735	145770736	+	0	NA	"exon (NM_025251, exon 7 of 13)"	"exon (NM_025251, exon 7 of 13)"	-16277	NM_001001795	414919	Hs.105685	NM_001001795		C8orf82	-	chromosome 8 open reading frame 82	protein-coding
chrX.79552088.-	chrX	79552088	79552089	-	0	NA	Intergenic	AluSp|SINE|Alu	38915	NM_001170574	169966	Hs.367959	NM_001170574	ENSG00000174016	FAM46D	CT1.26|CT112	"family with sequence similarity 46, member D"	protein-coding
chr22.49948706.-	chr22	49948706	49948707	-	0	NA	Intergenic	Intergenic	-102484	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr17.1634075.-	chr17	1634075	1634076	-	0	NA	"exon (NM_001163673, exon 3 of 10)"	"exon (NM_001163673, exon 3 of 10)"	-5950	NM_001163809	124997	Hs.234572	NM_001163673	ENSG00000167716	WDR81	CAMRQ2	WD repeat domain 81	protein-coding
chrX.117828376.-	chrX	117828376	117828377	-	0	NA	Intergenic	AluSx|SINE|Alu	33183	NM_001560	3597	Hs.496646	NM_001560	ENSG00000131724	IL13RA1	CD213A1|IL-13Ra|NR4	"interleukin 13 receptor, alpha 1"	protein-coding
chr6.163752469.-	chr6	163752469	163752470	-	0	NA	Intergenic	Intergenic	6964	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr19.4141903.-	chr19	4141903	4141904	-	0	NA	Intergenic	AluY|SINE|Alu	11695	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr16.53448434.+	chr16	53448434	53448435	+	0	NA	Intergenic	AluSp|SINE|Alu	-19917	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr10.977492.+	chr10	977492	977493	+	0	NA	"5' UTR (NM_015155, exon 1 of 18)"	"5' UTR (NM_015155, exon 1 of 18)"	153	NM_015155	23185	Hs.159069	NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	"La ribonucleoprotein domain family, member 4B"	protein-coding
chr6.45365111.-	chr6	45365111	45365112	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19323	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr1.227982863.+	chr1	227982863	227982864	+	0	NA	Intergenic	Intergenic	-20555	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr20.33283481.-	chr20	33283481	33283482	-	0	NA	Intergenic	AluY|SINE|Alu	8667	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr19.38757011.+	chr19	38757011	38757012	+	0	NA	"intron (NM_001166103, intron 1 of 5)"	AluSq|SINE|Alu	1913	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr4.1541940.-	chr4	1541940	1541941	-	0	NA	Intergenic	Intergenic	-143778	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr17.2311348.-	chr17	2311348	2311349	-	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	7090	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr7.155656501.+	chr7	155656501	155656502	+	0	NA	Intergenic	Intergenic	-51534	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr1.170388427.+	chr1	170388427	170388428	+	0	NA	Intergenic	SVA_D|Other|Other	-112836	NR_027397	92344	Hs.183702	NM_001146039	ENSG00000120370	GORAB	GO|NTKLBP1|SCYL1BP1	"golgin, RAB6-interacting"	protein-coding
chr2.62423175.-	chr2	62423175	62423176	-	0	NA	promoter-TSS (NM_006577)	promoter-TSS (NM_006577)	87	NM_006577	10678	Hs.173203	NM_006577	ENSG00000170340	B3GNT2	B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2"	protein-coding
chr22.18532572.-	chr22	18532572	18532573	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20421	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr12.69004653.+	chr12	69004653	69004654	+	0	NA	promoter-TSS (NM_001251922)	promoter-TSS (NM_001251922)	34	NM_001010942	5908	Hs.369920	NM_001010942	ENSG00000127314	RAP1B	K-REV|RAL1B	"RAP1B, member of RAS oncogene family"	protein-coding
chr12.132353190.+	chr12	132353190	132353191	+	0	NA	Intergenic	Intergenic	-26089	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr10.134000130.+	chr10	134000130	134000131	+	0	NA	promoter-TSS (NM_006426)	promoter-TSS (NM_006426)	-284	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr3.73614870.+	chr3	73614870	73614871	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59202	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr16.89117874.+	chr16	89117874	89117875	+	0	NA	Intergenic	Intergenic	-42343	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr8.126398047.+	chr8	126398047	126398048	+	0	NA	Intergenic	Intergenic	-44516	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr18.66366013.-	chr18	66366013	66366014	-	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	-16340	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr10.93393146.+	chr10	93393146	93393147	+	0	NA	promoter-TSS (NM_005398)	promoter-TSS (NM_005398)	-288	NM_005398	5507	Hs.700228	NM_005398	ENSG00000119938	PPP1R3C	PPP1R5	"protein phosphatase 1, regulatory subunit 3C"	protein-coding
chr5.103100208.-	chr5	103100208	103100209	-	0	NA	Intergenic	MER52A|LTR|ERV1	201718	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr16.11747048.-	chr16	11747048	11747049	-	0	NA	Intergenic	AluSx1|SINE|Alu	15241	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr12.53658255.-	chr12	53658255	53658256	-	0	NA	Intergenic	AluY|SINE|Alu	3828	NM_012291	9700	Hs.153479	NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies homolog 1 (S. cerevisiae)	protein-coding
chr17.4810685.+	chr17	4810685	4810686	+	0	NA	Intergenic	AluY|SINE|Alu	-4316	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	"cholinergic receptor, nicotinic, epsilon (muscle)"	protein-coding
chr19.18180432.+	chr19	18180432	18180433	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17265	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr19.58310323.-	chr19	58310323	58310324	-	0	NA	Intergenic	AluY|SINE|Alu	-15958	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr12.131402492.+	chr12	131402492	131402493	+	0	NA	Intergenic	L2b|LINE|L2	-35960	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr14.102576956.+	chr14	102576956	102576957	+	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	-23444	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr16.1332187.-	chr16	1332187	1332188	-	0	NA	Intergenic	AluSx|SINE|Alu	-25914	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr1.97029353.-	chr1	97029353	97029354	-	0	NA	Intergenic	AluSp|SINE|Alu	157822	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr1.21893046.-	chr1	21893046	21893047	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57188	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr3.188708060.+	chr3	188708060	188708061	+	0	NA	Intergenic	Intergenic	-181703	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr16.71647934.-	chr16	71647934	71647935	-	0	NA	Intergenic	AluSz|SINE|Alu	12122	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr1.180123980.-	chr1	180123980	180123981	-	0	NA	promoter-TSS (NM_002826)	promoter-TSS (NM_002826)	-12	NM_001004128	5768	Hs.518374	NM_001004128	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin Q6 sulfhydryl oxidase 1	protein-coding
chr3.112808039.-	chr3	112808039	112808040	-	0	NA	Intergenic	AluYc|SINE|Alu	69484	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr11.126335546.+	chr11	126335546	126335547	+	0	NA	"intron (NM_032531, intron 5 of 16)"	"intron (NM_032531, intron 5 of 16)"	59469	NM_001254759	6484	Hs.591947	NM_001254757	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	"ST3 beta-galactoside alpha-2,3-sialyltransferase 4"	protein-coding
chr4.185655169.+	chr4	185655169	185655170	+	0	NA	"intron (NM_024629, intron 1 of 12)"	CpG	117	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr1.205072088.+	chr1	205072088	205072089	+	0	NA	"intron (NM_001193273, intron 5 of 13)"	AluSp|SINE|Alu	-18500	NM_203376	388730	Hs.146928	NM_203376	ENSG00000174529	TMEM81	HC3107|KVLA2788|UNQ2788	transmembrane protein 81	protein-coding
chr4.26862264.+	chr4	26862264	26862265	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-49	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr20.30581873.+	chr20	30581873	30581874	+	0	NA	"intron (NM_001011718, intron 1 of 2)"	"intron (NM_001011718, intron 1 of 2)"	-16372	NM_080625	140706	Hs.638682	NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	cerebral cavernous malformation 2-like	protein-coding
chr20.30433163.-	chr20	30433163	30433164	-	0	NA	"exon (NM_004118, exon 1 of 1)"	"exon (NM_004118, exon 1 of 1)"	-257	NM_004118	2307	Hs.516971	NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
chr7.66480041.-	chr7	66480041	66480042	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18249	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr20.37160859.+	chr20	37160859	37160860	+	0	NA	"intron (NM_020336, intron 14 of 29)"	AluY|SINE|Alu	-48979	NM_001018082	149685	Hs.368028	NM_174906	ENSG00000182035	ADIG	SMAF1	adipogenin	protein-coding
chr6.43016797.+	chr6	43016797	43016798	+	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	4886	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr22.50341774.-	chr22	50341774	50341775	-	0	NA	Intergenic	Intergenic	12369	NM_001001852	415116	Hs.530381	NM_001001852	ENSG00000198355	PIM3	pim-3	pim-3 oncogene	protein-coding
chr14.53476811.+	chr14	53476811	53476812	+	0	NA	Intergenic	AluSx|SINE|Alu	-58996	NM_006832	10979	Hs.509343	NM_001134999	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
chr1.163468731.+	chr1	163468731	163468732	+	0	NA	Intergenic	SVA_A|Other|Other	177008	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chrX.31406407.+	chrX	31406407	31406408	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120008	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr18.5524159.+	chr18	5524159	5524160	+	0	NA	"intron (NM_012307, intron 1 of 22)"	"intron (NM_012307, intron 1 of 22)"	19827	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr11.113666070.-	chr11	113666070	113666071	-	0	NA	Intergenic	L1ME3F|LINE|L1	-15552	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr1.48240966.-	chr1	48240966	48240967	-	0	NA	"exon (NM_001194986, exon 6 of 7)"	"exon (NM_001194986, exon 6 of 7)"	-221596	NM_001194986	388630	Hs.61504	NM_001194986		TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
chr9.14830605.+	chr9	14830605	14830606	+	0	NA	"intron (NM_144966, intron 11 of 37)"	"intron (NM_144966, intron 11 of 37)"	-51074	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr9.95526675.+	chr9	95526675	95526676	+	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	408	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr20.42218546.-	chr20	42218546	42218547	-	0	NA	Intergenic	AluJb|SINE|Alu	1033	NM_016004	51098	Hs.444332	NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1	intraflagellar transport 52 homolog (Chlamydomonas)	protein-coding
chr11.67759475.-	chr11	67759475	67759476	-	0	NA	"intron (NM_030930, intron 10 of 10)"	"intron (NM_030930, intron 10 of 10)"	-12118	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chr7.66480063.-	chr7	66480063	66480064	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18271	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr3.129048065.-	chr3	129048065	129048066	-	0	NA	Intergenic	AluY|SINE|Alu	12945	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr19.6307829.+	chr19	6307829	6307830	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25811	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr7.5205941.+	chr7	5205941	5205942	+	0	NA	Intergenic	Intergenic	-21764	NR_034163	645700	Hs.690815	NR_034163	ENSG00000159904	ZNF890P	-	"zinc finger protein 890, pseudogene"	pseudo
chr4.68566916.-	chr4	68566916	68566917	-	0	NA	promoter-TSS (NR_015439)	promoter-TSS (NR_015439)	27	NM_018227	55236	Hs.212774	NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin-like modifier activating enzyme 6	protein-coding
chr8.57026442.-	chr8	57026442	57026443	-	0	NA	promoter-TSS (NM_005372)	promoter-TSS (NM_005372)	-99	NM_005372	4342	Hs.533432	NM_005372	ENSG00000172680	MOS	MSV	v-mos Moloney murine sarcoma viral oncogene homolog	protein-coding
chr10.73848185.+	chr10	73848185	73848186	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	346	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr12.132116772.+	chr12	132116772	132116773	+	0	NA	Intergenic	L1ME1|LINE|L1	-78860	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr13.23713128.+	chr13	23713128	23713129	+	0	NA	Intergenic	AluY|SINE|Alu	-41932	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr7.54614239.+	chr7	54614239	54614240	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4220	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr1.110752962.-	chr1	110752962	110752963	-	0	NA	promoter-TSS (NM_004978)	promoter-TSS (NM_004978)	374	NR_036437	3749	Hs.153521	NM_001039574	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	"potassium voltage-gated channel, Shaw-related subfamily, member 4"	protein-coding
chr13.20343702.+	chr13	20343702	20343703	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluSx|SINE|Alu	13457	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr1.32731832.-	chr1	32731832	32731833	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7880	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chrX.112187627.+	chrX	112187627	112187628	+	0	NA	Intergenic	AluY|SINE|Alu	-103584	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chrM.16394.-	chrM	16394	16395	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chrX.70362686.+	chrX	70362686	70362687	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-1995	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr19.1588171.+	chr19	1588171	1588172	+	0	NA	"intron (NM_003926, intron 1 of 5)"	"intron (NM_003926, intron 1 of 5)"	4481	NM_003926	53615	Hs.178728	NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
chr7.53103654.-	chr7	53103654	53103655	-	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	-305	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr11.1145236.-	chr11	1145236	1145237	-	0	NA	Intergenic	Intergenic	-70361	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr5.86907871.-	chr5	86907871	86907872	-	0	NA	Intergenic	AluY|SINE|Alu	199021	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr7.66064153.+	chr7	66064153	66064154	+	0	NA	Intergenic	AluY|SINE|Alu	-20655	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr18.27932457.+	chr18	27932457	27932458	+	0	NA	Intergenic	MER52A|LTR|ERV1	53581	NR_031684	100302131		NR_031684		MIR302F	MIRN302F|hsa-mir-302f	microRNA 302f	miscRNA
chr12.133366778.-	chr12	133366778	133366779	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28327	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr3.122695683.-	chr3	122695683	122695684	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	702	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr11.342898.-	chr11	342898	342899	-	0	NA	Intergenic	AluSz|SINE|Alu	21984	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr7.63233355.-	chr7	63233355	63233356	-	0	NA	Intergenic	Intergenic	-151887	NR_036270	100422848		NR_036270	ENSG00000265214	MIR4283-2	-	microRNA 4283-2	miscRNA
chr2.99322169.-	chr2	99322169	99322170	-	0	NA	"intron (NM_012214, intron 2 of 15)"	AluYb8|SINE|Alu	-25420	NM_012214	11320	Hs.177576	NM_001160154	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A"	protein-coding
chr7.455720.+	chr7	455720	455721	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	36329	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr8.143373231.+	chr8	143373231	143373232	+	0	NA	"intron (NM_145003, intron 10 of 13)"	"intron (NM_145003, intron 10 of 13)"	93514	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr6.12012473.+	chr6	12012473	12012474	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-251	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr3.13876290.+	chr3	13876290	13876291	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45328	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr2.157198774.+	chr2	157198774	157198775	+	0	NA	Intergenic	CpG	-9487	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr10.65193019.-	chr10	65193019	65193020	-	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSp|SINE|Alu	31970	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr2.120775593.+	chr2	120775593	120775594	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4808	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr2.155617310.+	chr2	155617310	155617311	+	0	NA	"intron (NM_002239, intron 2 of 2)"	AluY|SINE|Alu	62217	NM_001260509	3760	Hs.591606	NM_001260508	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	"potassium inwardly-rectifying channel, subfamily J, member 3"	protein-coding
chr12.127944432.-	chr12	127944432	127944433	-	0	NA	Intergenic	Intergenic	421730	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr14.23517165.+	chr14	23517165	23517166	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5789	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr17.77198164.+	chr17	77198164	77198165	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	127145	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr6.167607740.-	chr6	167607740	167607741	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23659	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr2.236999580.+	chr2	236999580	236999581	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	77072	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr7.727491.-	chr7	727491	727492	-	0	NA	"intron (NM_002735, intron 2 of 10)"	AluSx1|SINE|Alu	-24670	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr10.35559801.-	chr10	35559801	35559802	-	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	-23848	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr18.11959820.+	chr18	11959820	11959821	+	0	NA	Intergenic	SVA_D|Other|Other	-21607	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr15.101420301.+	chr15	101420301	101420302	+	0	NA	"intron (NM_000693, intron 1 of 12)"	CpG	292	NM_000693	220	Hs.459538	NM_000693	ENSG00000184254	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	"aldehyde dehydrogenase 1 family, member A3"	protein-coding
chr7.56109609.-	chr7	56109609	56109610	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9659	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr7.158268155.+	chr7	158268155	158268156	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	57350	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr2.168057489.+	chr2	168057489	168057490	+	0	NA	"intron (NM_001199144, intron 1 of 8)"	AluSx1|SINE|Alu	13696	NM_001199145	129446	Hs.73680	NM_001079810	ENSG00000163092	XIRP2	CMYA3	xin actin-binding repeat containing 2	protein-coding
chr1.10727884.+	chr1	10727884	10727885	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128849	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr11.8737250.+	chr11	8737250	8737251	+	0	NA	"exon (NM_213618, exon 6 of 20)"	"exon (NM_213618, exon 6 of 20)"	30264	NR_002977	677826	Hs.523463	NR_002977		SNORA45	ACA3-2	"small nucleolar RNA, H/ACA box 45"	snoRNA
chr3.14550439.+	chr3	14550439	14550440	+	0	NA	"intron (NM_001080423, intron 18 of 24)"	L2b|LINE|L2	33149	NM_001080423	80852	Hs.517819	NM_001080423		GRIP2	-	glutamate receptor interacting protein 2	protein-coding
chr9.33194257.+	chr9	33194257	33194258	+	0	NA	Intergenic	AluY|SINE|Alu	-26901	NM_001497	2683	Hs.272011	NM_001497	ENSG00000086062	B4GALT1	B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1	"UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1"	protein-coding
chr5.176292918.+	chr5	176292918	176292919	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33415	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr17.43295790.+	chr17	43295790	43295791	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3502	NM_005892	752	Hs.100217	NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin-like 1	protein-coding
chr20.48703495.+	chr20	48703495	48703496	+	0	NA	"intron (NM_022442, intron 2 of 3)"	AluY|SINE|Alu	26240	NM_001257399	7335	Hs.420529	NM_001032288	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
chr1.32679379.-	chr1	32679379	32679380	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4684	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr17.7561700.-	chr17	7561700	7561701	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7446	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr12.8777868.-	chr12	8777868	8777869	-	0	NA	Intergenic	Intergenic	12426	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr16.30960902.-	chr16	30960902	30960903	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-497	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr20.55247378.+	chr20	55247378	55247379	+	0	NA	Intergenic	AluSz6|SINE|Alu	43020	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr3.183052325.+	chr3	183052325	183052326	+	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	81293	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr21.45243634.-	chr21	45243634	45243635	-	0	NA	Intergenic	Intergenic	11186	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr2.43595142.-	chr2	43595142	43595143	-	0	NA	"intron (NM_022065, intron 29 of 37)"	AluSc8|SINE|Alu	-140792	NR_027251	100129726	Hs.194480	NM_178529		LOC100129726	-	uncharacterized LOC100129726	miscRNA
chr16.88772895.-	chr16	88772895	88772896	-	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	-4	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr4.68566907.+	chr4	68566907	68566908	+	0	NA	promoter-TSS (NR_015439)	promoter-TSS (NR_015439)	-18	NM_018227	55236	Hs.212774	NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin-like modifier activating enzyme 6	protein-coding
chr5.177963652.-	chr5	177963652	177963653	-	0	NA	"intron (NM_173465, intron 2 of 28)"	"intron (NM_173465, intron 2 of 28)"	-53904	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chrX.54404404.+	chrX	54404404	54404405	+	0	NA	Intergenic	AluY|SINE|Alu	-19966	NM_020922	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr2.114361284.+	chr2	114361284	114361285	+	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	10	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr22.19172048.+	chr22	19172048	19172049	+	0	NA	"intron (NM_001835, intron 28 of 31)"	"intron (NM_001835, intron 28 of 31)"	-5710	NR_046298	6576	Hs.111024	NM_001256534	ENSG00000100075	SLC25A1	CTP|SEA|SLC20A3	"solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1"	protein-coding
chr15.29130801.-	chr15	29130801	29130802	-	0	NA	Intergenic	CpG	36980	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr16.78269396.+	chr16	78269396	78269397	+	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	136069	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr19.2427761.+	chr19	2427761	2427762	+	0	NA	TTS (NM_032737)	TTS (NM_032737)	114	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr19.1045828.+	chr19	1045828	1045829	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5726	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr5.10655675.+	chr5	10655675	10655676	+	0	NA	"3' UTR (NM_001164440, exon 4 of 4)"	"3' UTR (NM_001164440, exon 4 of 4)"	91240	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chr9.135457672.+	chr9	135457672	135457673	+	0	NA	promoter-TSS (NM_020064)	promoter-TSS (NM_020064)	-321	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH-like homeobox 1	protein-coding
chr10.134216452.+	chr10	134216452	134216453	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5750	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr16.443651.-	chr16	443651	443652	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3541	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr7.12751274.+	chr7	12751274	12751275	+	0	NA	Intergenic	AluY|SINE|Alu	24363	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr5.56111790.-	chr5	56111790	56111791	-	0	NA	"exon (NM_005921, exon 1 of 20)"	"exon (NM_005921, exon 1 of 20)"	-890	NM_005921	4214	Hs.653654	NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	"mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase"	protein-coding
chr11.113666017.+	chr11	113666017	113666018	+	0	NA	Intergenic	AluSx|SINE|Alu	15499	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr5.103114787.-	chr5	103114787	103114788	-	0	NA	Intergenic	LTR12D|LTR|ERV1	216297	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr5.145549272.+	chr5	145549272	145549273	+	0	NA	"intron (NM_020117, intron 4 of 31)"	AluSq2|SINE|Alu	13022	NM_020117	51520	Hs.432674	NM_020117	ENSG00000133706	LARS	HSPC192|LARS1|LEURS|LEUS|LRS|PIG44|RNTLS|hr025Cl	leucyl-tRNA synthetase	protein-coding
chr6.165205849.-	chr6	165205849	165205850	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517262	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr1.243422537.+	chr1	243422537	243422538	+	0	NA	"intron (NM_006642, intron 1 of 17)"	AluY|SINE|Alu	3230	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
chr5.93974013.-	chr5	93974013	93974014	-	0	NA	"intron (NM_032290, intron 4 of 20)"	AluY|SINE|Alu	-19622	NM_032290	84250	Hs.657315	NM_032290		ANKRD32	BRCTD1|BRCTx	ankyrin repeat domain 32	protein-coding
chr7.54614238.+	chr7	54614238	54614239	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4219	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr6.167763861.-	chr6	167763861	167763862	-	0	NA	Intergenic	Intergenic	-25287	NM_031949	83887	Hs.520554	NM_031949		TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	"tubulin tyrosine ligase-like family, member 2"	protein-coding
chr21.46383151.+	chr21	46383151	46383152	+	0	NA	"intron (NM_058190, intron 3 of 5)"	AluY|SINE|Alu	23196	NM_058190	85395	Hs.410830	NM_058190	ENSG00000160256	FAM207A	C21orf70	"family with sequence similarity 207, member A"	protein-coding
chr17.17943225.+	chr17	17943225	17943226	+	0	NA	promoter-TSS (NM_145691)	promoter-TSS (NM_145691)	614	NM_024052	79018	Hs.187422	NM_024052	ENSG00000141034	GID4	C17orf39|VID24	"GID complex subunit 4, VID24 homolog (S. cerevisiae)"	protein-coding
chr20.18441236.-	chr20	18441236	18441237	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6593	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr8.143682822.+	chr8	143682822	143682823	+	0	NA	Intergenic	Intergenic	13011	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr3.102973936.+	chr3	102973936	102973937	+	0	NA	Intergenic	SVA_D|Other|Other	820077	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr10.18385447.-	chr10	18385447	18385448	-	0	NA	Intergenic	AluY|SINE|Alu	44159	NM_201596	783	Hs.59093	NM_000724	ENSG00000165995	CACNB2	CACNLB2|CAVB2|MYSB	"calcium channel, voltage-dependent, beta 2 subunit"	protein-coding
chr1.238519126.-	chr1	238519126	238519127	-	0	NA	Intergenic	AluSg|SINE|Alu	-130191	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LOC339535	-	uncharacterized LOC339535	miscRNA
chr6.159416788.-	chr6	159416788	159416789	-	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	-4410	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr19.34394394.+	chr19	34394394	34394395	+	0	NA	Intergenic	AluSx1|SINE|Alu	106643	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr19.8131026.+	chr19	8131026	8131027	+	0	NA	"exon (NM_032447, exon 63 of 63)"	"exon (NM_032447, exon 63 of 63)"	13380	NM_005624	6370	Hs.310511	NM_001201359	ENSG00000131142	CCL25	Ckb15|SCYA25|TECK	chemokine (C-C motif) ligand 25	protein-coding
chr10.104209684.-	chr10	104209684	104209685	-	0	NA	TTS (NM_024886)	TTS (NM_024886)	-110	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr12.114028992.-	chr12	114028992	114028993	-	0	NA	Intergenic	AluY|SINE|Alu	119115	NM_022363	64211	Hs.302029	NM_022363		LHX5	-	LIM homeobox 5	protein-coding
chr10.7829674.-	chr10	7829674	7829675	-	0	NA	promoter-TSS (NM_005174)	promoter-TSS (NM_005174)	-316	NM_012311	22944	Hs.397918	NM_012311		KIN	BTCD|KIN17	"KIN, antigenic determinant of recA protein homolog (mouse)"	protein-coding
chr1.28207927.+	chr1	28207927	28207928	+	0	NA	"intron (NM_004848, intron 3 of 4)"	AluY|SINE|Alu	8872	NM_001039477	9473	Hs.10649	NM_001039477	ENSG00000130775	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
chr9.19446619.+	chr9	19446619	19446620	+	0	NA	"intron (NM_001010887, intron 5 of 5)"	"intron (NM_001010887, intron 5 of 5)"	37694	NM_001010887	340485	Hs.41379	NM_001010887		ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
chr12.31575312.+	chr12	31575312	31575313	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96153	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr7.95178726.+	chr7	95178726	95178727	+	0	NA	Intergenic	AluY|SINE|Alu	47199	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr19.46443426.+	chr19	46443426	46443427	+	0	NA	"exon (NM_002516, exon 4 of 4)"	"exon (NM_002516, exon 4 of 4)"	-25390	NM_001029861	339345	Hs.434218	NM_001029861	ENSG00000188425	NANOS2	NOS2	nanos homolog 2 (Drosophila)	protein-coding
chr7.1512340.+	chr7	1512340	1512341	+	0	NA	"intron (NM_001080453, intron 43 of 47)"	"intron (NM_001080453, intron 43 of 47)"	-13231	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr2.202092563.-	chr2	202092563	202092564	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5603	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr3.188566627.-	chr3	188566627	188566628	-	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	323136	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr17.22012681.-	chr17	22012681	22012682	-	0	NA	Intergenic	Intergenic	9756	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr2.31691890.+	chr2	31691890	31691891	+	0	NA	Intergenic	AluY|SINE|Alu	-54279	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr2.207195400.+	chr2	207195400	207195401	+	0	NA	Intergenic	AluY|SINE|Alu	55877	NM_020923	57683	Hs.110489	NM_020923	ENSG00000204186	ZDBF2	-	"zinc finger, DBF-type containing 2"	protein-coding
chr2.210525407.-	chr2	210525407	210525408	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-81004	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr12.6738350.-	chr12	6738350	6738351	-	0	NA	"intron (NM_020400, intron 1 of 1)"	AluSx|SINE|Alu	-2465	NM_001142961	57121	Hs.155538	NM_001142961	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
chr2.101214312.-	chr2	101214312	101214313	-	0	NA	Intergenic	AluY|SINE|Alu	-34894	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr13.77954591.-	chr13	77954591	77954592	-	0	NA	Intergenic	AluSc|SINE|Alu	53414	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr12.123921372.+	chr12	123921372	123921373	+	0	NA	promoter-TSS (NM_145058)	promoter-TSS (NM_145058)	-108	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr17.841734.-	chr17	841734	841735	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSg|SINE|Alu	-41264	NM_022463	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr17.4453856.+	chr17	4453856	4453857	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4825	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr10.99079155.+	chr10	99079155	99079156	+	0	NA	"5' UTR (NM_005479, exon 1 of 1)"	"5' UTR (NM_005479, exon 1 of 1)"	133	NM_005479	10023	Hs.126057	NM_005479	ENSG00000165879	FRAT1	-	frequently rearranged in advanced T-cell lymphomas	protein-coding
chr9.138663354.+	chr9	138663354	138663355	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69323	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr3.139481308.-	chr3	139481308	139481309	-	0	NA	Intergenic	Intergenic	84423	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr7.95181980.-	chr7	95181980	95181981	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-43945	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr17.744664.+	chr17	744664	744665	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22687	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr9.34329761.+	chr9	34329761	34329762	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	257	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr20.34266396.+	chr20	34266396	34266397	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13518	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr9.83940576.-	chr9	83940576	83940577	-	0	NA	Intergenic	AluY|SINE|Alu	-363020	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr10.69822260.-	chr10	69822260	69822261	-	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	-12843	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr11.118672094.+	chr11	118672094	118672095	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10122	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr2.64739157.-	chr2	64739157	64739158	-	0	NA	Intergenic	SVA_F|Other|Other	12282	NM_001002243	54812	Hs.655167	NM_001002243	ENSG00000119844	AFTPH	Nbla10388	aftiphilin	protein-coding
chr5.1137811.-	chr5	1137811	1137812	-	0	NA	Intergenic	Intergenic	25639	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr2.221058144.-	chr2	221058144	221058145	-	0	NA	Intergenic	MER52A|LTR|ERV1	286858	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr17.35266224.+	chr17	35266224	35266225	+	0	NA	Intergenic	AluSx3|SINE|Alu	-28548	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr14.76127600.-	chr14	76127600	76127601	-	0	NA	promoter-TSS (NM_015072)	promoter-TSS (NM_015072)	-49	NM_015072	23093	Hs.709609	NM_015072	ENSG00000119685	TTLL5	KIAA0998|STAMP	"tubulin tyrosine ligase-like family, member 5"	protein-coding
chr17.8252965.-	chr17	8252965	8252966	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9777	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr16.30961001.+	chr16	30961001	30961002	+	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	596	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr7.3124636.+	chr7	3124636	3124637	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41127	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr17.4487636.-	chr17	4487636	4487637	-	0	NA	promoter-TSS (NM_001114974)	promoter-TSS (NM_001114974)	198	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr6.24495509.-	chr6	24495509	24495510	-	0	NA	"exon (NM_001080, exon 1 of 10)"	"exon (NM_001080, exon 1 of 10)"	-312	NM_170740	7915	Hs.371723	NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	"aldehyde dehydrogenase 5 family, member A1"	protein-coding
chr14.34924283.+	chr14	34924283	34924284	+	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	7185	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr6.170548045.+	chr6	170548045	170548046	+	0	NA	Intergenic	Intergenic	23612	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr16.85317956.-	chr16	85317956	85317957	-	0	NA	"intron (NR_038859, intron 1 of 2)"	CpG	-1392	NR_038859	197196	Hs.679002	NR_038859	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	miscRNA
chr3.1144512.-	chr3	1144512	1144513	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9883	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr10.118500979.+	chr10	118500979	118500980	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1106	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr12.112407371.-	chr12	112407371	112407372	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSx3|SINE|Alu	-43652	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr18.41408436.+	chr18	41408436	41408437	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550821	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr16.1959149.+	chr16	1959149	1959150	+	0	NA	Intergenic	Intergenic	9082	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr5.41870535.-	chr5	41870535	41870536	-	0	NA	"5' UTR (NM_000436, exon 1 of 17)"	"5' UTR (NM_000436, exon 1 of 17)"	-256	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA transferase 1	protein-coding
chr6.126100211.+	chr6	126100211	126100212	+	0	NA	Intergenic	AluY|SINE|Alu	-2096	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr11.1476573.+	chr11	1476573	1476574	+	0	NA	"intron (NM_003957, intron 16 of 19)"	"intron (NM_003957, intron 16 of 19)"	31375	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr6.2221770.-	chr6	2221770	2221771	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24098	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr2.210074163.-	chr2	210074163	210074164	-	0	NA	Intergenic	CpG	214608	NM_001039538	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr7.74447205.+	chr7	74447205	74447206	+	0	NA	Intergenic	Intergenic	42494	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr3.20776914.-	chr3	20776914	20776915	-	0	NA	Intergenic	AluSx3|SINE|Alu	549190	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr2.10127172.+	chr2	10127172	10127173	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSz6|SINE|Alu	35380	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr21.48082429.+	chr21	48082429	48082430	+	0	NA	"intron (NM_001242864, intron 7 of 8)"	"intron (NM_001242864, intron 7 of 8)"	26922	NM_206962	3275	Hs.154163	NM_001242864	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
chr14.77743548.+	chr14	77743548	77743549	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5893	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr7.2933071.+	chr7	2933071	2933072	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49112	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chrX.153657115.+	chrX	153657115	153657116	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	137	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr9.139513541.-	chr9	139513541	139513542	-	0	NA	Intergenic	Intergenic	39767	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr12.49163965.-	chr12	49163965	49163966	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1855	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr20.3219283.+	chr20	3219283	3219284	+	0	NA	promoter-TSS (NM_001174090)	promoter-TSS (NM_001174090)	-448	NM_001174090	83959	Hs.105607	NM_001174089	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	"solute carrier family 4, sodium borate transporter, member 11"	protein-coding
chr1.114299597.+	chr1	114299597	114299598	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2180	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chrX.47215633.-	chrX	47215633	47215634	-	0	NA	Intergenic	AluY|SINE|Alu	14366	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr7.75420395.-	chr7	75420395	75420396	-	0	NA	Intergenic	AluSq2|SINE|Alu	1331	NM_006072	10344	Hs.131342	NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	chemokine (C-C motif) ligand 26	protein-coding
chr7.534859.-	chr7	534859	534860	-	0	NA	Intergenic	Intergenic	-24622	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr8.121513317.+	chr8	121513317	121513318	+	0	NA	"intron (NM_022045, intron 14 of 21)"	AluY|SINE|Alu	-55670	NM_014078	28998	Hs.333823	NM_014078	ENSG00000172172	MRPL13	L13|L13A|L13mt|RPL13|RPML13	mitochondrial ribosomal protein L13	protein-coding
chr6.1610255.+	chr6	1610255	1610256	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-426	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr6.24720971.-	chr6	24720971	24720972	-	0	NA	Intergenic	CpG	1568	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr16.87903509.+	chr16	87903509	87903510	+	0	NA	promoter-TSS (NM_003486)	promoter-TSS (NM_003486)	-409	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr8.14459352.-	chr8	14459352	14459353	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251667	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr17.4926603.+	chr17	4926603	4926604	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12124	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr20.45162729.-	chr20	45162729	45162730	-	0	NA	Intergenic	MER52C|LTR|ERV1	-16484	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
chr18.60740378.+	chr18	60740378	60740379	+	0	NA	Intergenic	AluYb8|SINE|Alu	246235	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr12.132689835.+	chr12	132689835	132689836	+	0	NA	"intron (NM_001122636, intron 6 of 10)"	"intron (NM_001122636, intron 6 of 10)"	738	NM_021808	50614	Hs.658249	NM_001122636	ENSG00000182870	GALNT9	GALNAC-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)	protein-coding
chr9.35728488.+	chr9	35728488	35728489	+	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	-3829	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr9.105850393.-	chr9	105850393	105850394	-	0	NA	Intergenic	AluYc|SINE|Alu	-92800	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr1.149646783.-	chr1	149646783	149646784	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70330	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chrX.134124976.-	chrX	134124976	134124977	-	0	NA	promoter-TSS (NM_001163438)	promoter-TSS (NM_001163438)	-8	NM_001163438	644538	Hs.42239	NM_001163438	ENSG00000184785	SMIM10	CXorf69	small integral membrane protein 10	protein-coding
chr10.23067322.-	chr10	23067322	23067323	-	0	NA	Intergenic	AluSz|SINE|Alu	63819	NM_005028	5305	Hs.57079	NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	"phosphatidylinositol-5-phosphate 4-kinase, type II, alpha"	protein-coding
chr19.40030550.-	chr19	40030550	40030551	-	0	NA	"exon (NM_153232, exon 1 of 1)"	"exon (NM_153232, exon 1 of 1)"	-288	NM_153232	163126	Hs.18949	NM_153232		EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
chr18.43787450.+	chr18	43787450	43787451	+	0	NA	"intron (NM_001008239, intron 1 of 3)"	AluSg|SINE|Alu	33462	NM_145055	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr6.168397401.-	chr6	168397401	168397402	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	19782	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr2.242447095.-	chr2	242447095	242447096	-	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	-680	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr4.3631922.+	chr4	3631922	3631923	+	0	NA	Intergenic	Intergenic	47660	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	miscRNA
chr11.64694546.-	chr11	64694546	64694547	-	0	NA	"intron (NM_006244, intron 3 of 13)"	"intron (NM_006244, intron 3 of 13)"	-2403	NM_006244	5526	Hs.75199	NM_006244	ENSG00000068971	PPP2R5B	B56B|PR61B	"protein phosphatase 2, regulatory subunit B', beta"	protein-coding
chr17.8059765.+	chr17	8059765	8059766	+	0	NA	Intergenic	CpG	-4012	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr11.73472149.-	chr11	73472149	73472150	-	0	NA	promoter-TSS (NM_002869)	promoter-TSS (NM_002869)	-52	NM_198896	5870	Hs.535586	NM_001243718	ENSG00000175582	RAB6A	RAB6	"RAB6A, member RAS oncogene family"	protein-coding
chr8.98771768.-	chr8	98771768	98771769	-	0	NA	Intergenic	AluSq10|SINE|Alu	16041	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr6.170548028.+	chr6	170548028	170548029	+	0	NA	Intergenic	Intergenic	23629	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr9.29214936.+	chr9	29214936	29214937	+	0	NA	Intergenic	Intergenic	-1938	NM_001258282	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr11.64819791.+	chr11	64819791	64819792	+	0	NA	"intron (NM_005468, intron 8 of 17)"	L2c|LINE|L2	6218	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr22.46522777.-	chr22	46522777	46522778	-	0	NA	Intergenic	Intergenic	-13211	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr22.51010964.+	chr22	51010964	51010965	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5542	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr2.61701796.+	chr2	61701796	61701797	+	0	NA	Intergenic	AluSg|SINE|Alu	-3947	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr12.112161129.+	chr12	112161129	112161130	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37272	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr9.16766064.+	chr9	16766064	16766065	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	104722	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr19.11060479.+	chr19	11060479	11060480	+	0	NA	Intergenic	AluY|SINE|Alu	-11119	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr1.147390368.-	chr1	147390368	147390369	-	0	NA	Intergenic	AluY|SINE|Alu	10138	NM_016334	51463	Hs.645432	NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|SH120	G protein-coupled receptor 89B	protein-coding
chr5.57859594.+	chr5	57859594	57859595	+	0	NA	Intergenic	SVA_A|Other|Other	-19345	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr9.28773115.+	chr9	28773115	28773116	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53812	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr19.9879355.-	chr19	9879355	9879356	-	0	NA	promoter-TSS (NM_001077624)	promoter-TSS (NM_001077624)	-55	NM_001077624	162993	Hs.665717	NM_001077624	ENSG00000196605	ZNF846	-	zinc finger protein 846	protein-coding
chr13.21644878.-	chr13	21644878	21644879	-	0	NA	Intergenic	AluSx|SINE|Alu	9156	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr6.168395067.-	chr6	168395067	168395068	-	0	NA	Intergenic	AluSx|SINE|Alu	17448	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr12.8057417.-	chr12	8057417	8057418	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31475	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr9.116102488.+	chr9	116102488	116102489	+	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	132	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr19.13106872.-	chr19	13106872	13106873	-	0	NA	"intron (NM_002501, intron 1 of 9)"	CpG	-288	NM_002501	4784	Hs.257970	NM_001271043	ENSG00000008441	NFIX	MRSHSS|NF1A|SOTOS2	nuclear factor I/X (CCAAT-binding transcription factor)	protein-coding
chr9.80376635.-	chr9	80376635	80376636	-	0	NA	"intron (NM_002072, intron 5 of 6)"	SVA_F|Other|Other	113403	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	"guanine nucleotide binding protein (G protein), alpha 14"	protein-coding
chr2.33801620.+	chr2	33801620	33801621	+	0	NA	Intergenic	AluSx|SINE|Alu	22742	NM_015475	25940	Hs.468140	NM_015475	ENSG00000119812	FAM98A	-	"family with sequence similarity 98, member A"	protein-coding
chr19.11372931.-	chr19	11372931	11372932	-	0	NA	"intron (NM_020812, intron 1 of 47)"	CpG	-237	NM_020812	57572	Hs.591002	NM_020812	ENSG00000130158	DOCK6	AOS2|ZIR1	dedicator of cytokinesis 6	protein-coding
chr19.16612720.-	chr19	16612720	16612721	-	0	NA	"intron (NM_032207, intron 2 of 8)"	AluSp|SINE|Alu	-5515	NM_032207	84167	Hs.631627	NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
chr16.1123304.-	chr16	1123304	1123305	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-548	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr9.34329792.-	chr9	34329792	34329793	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-288	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr1.1019202.+	chr1	1019202	1019203	+	0	NA	"intron (NM_017891, intron 9 of 9)"	"intron (NM_017891, intron 9 of 9)"	-9515	NM_001205252	401934	Hs.568137	NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
chr3.46792410.-	chr3	46792410	46792411	-	0	NA	Intergenic	CpG	6165	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr12.50228916.-	chr12	50228916	50228917	-	0	NA	TTS (NM_181708)	TTS (NM_181708)	-6590	NR_027500	100286844	Hs.656019	NR_027499	ENSG00000258057	BCDIN3D-AS1	-	BCDIN3D antisense RNA 1	miscRNA
chr1.203242751.+	chr1	203242751	203242752	+	0	NA	Intergenic	CpG	31702	NR_034151	730227	Hs.293928	NR_034150	ENSG00000233791	LOC730227	-	uncharacterized LOC730227	miscRNA
chr8.34872580.-	chr8	34872580	34872581	-	0	NA	Intergenic	AluSp|SINE|Alu	220395	NM_080872	137970	Hs.238889	NM_080872	ENSG00000156687	UNC5D	PRO34692|Unc5h4	unc-5 homolog D (C. elegans)	protein-coding
chr2.177027790.-	chr2	177027790	177027791	-	0	NA	Intergenic	CpG	1015	NM_006898	3232	Hs.93574	NM_006898		HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
chr11.67759435.-	chr11	67759435	67759436	-	0	NA	"intron (NM_030930, intron 10 of 10)"	CpG	-12158	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chr3.84566260.+	chr3	84566260	84566261	+	0	NA	Intergenic	AluY|SINE|Alu	352466	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr7.155246322.+	chr7	155246322	155246323	+	0	NA	Intergenic	Intergenic	-4502	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr10.135192348.-	chr10	135192348	135192349	-	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	393	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chrX.48664040.-	chrX	48664040	48664041	-	0	NA	"exon (NM_006044, exon 6 of 29)"	"exon (NM_006044, exon 6 of 29)"	-3553	NM_006044	10013	Hs.6764	NM_006044	ENSG00000094631	HDAC6	HD6	histone deacetylase 6	protein-coding
chr19.2400843.-	chr19	2400843	2400844	-	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	-11059	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr15.83248427.-	chr15	83248427	83248428	-	0	NA	"intron (NM_030594, intron 2 of 11)"	AluYb8|SINE|Alu	7854	NM_001079533	64506	Hs.547988	NM_001079533	ENSG00000214575	CPEB1	CEBP|CPE-BP1|CPEB	cytoplasmic polyadenylation element binding protein 1	protein-coding
chr5.138604922.+	chr5	138604922	138604923	+	0	NA	Intergenic	AluSz|SINE|Alu	-4519	NR_036535	9782	Hs.595110	NM_001194954	ENSG00000015479	MATR3	MPD2|VCPDM	matrin 3	protein-coding
chr11.66056557.-	chr11	66056557	66056558	-	0	NA	promoter-TSS (NM_020470)	promoter-TSS (NM_020470)	-81	NM_020470	10897	Hs.446445	NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding
chr17.1389857.-	chr17	1389857	1389858	-	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	806	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr7.77452614.+	chr7	77452614	77452615	+	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	-16833	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr1.183774326.-	chr1	183774326	183774327	-	0	NA	"intron (NM_015149, intron 2 of 18)"	CpG	151878	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr1.28703585.+	chr1	28703585	28703586	+	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	7492	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chrX.29933235.+	chrX	29933235	29933236	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300440	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr16.3441588.-	chr16	3441588	3441589	-	0	NA	"intron (NM_017810, intron 2 of 5)"	AluSq2|SINE|Alu	-9437	NM_017810	54925	Hs.592078	NM_017810	ENSG00000140987	ZSCAN32	ZNF434	zinc finger and SCAN domain containing 32	protein-coding
chr9.92166300.+	chr9	92166300	92166301	+	0	NA	Intergenic	AluY|SINE|Alu	-53627	NM_006705	10912	Hs.9701	NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	"growth arrest and DNA-damage-inducible, gamma"	protein-coding
chr7.155246412.+	chr7	155246412	155246413	+	0	NA	Intergenic	CpG	-4412	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr18.19630106.+	chr18	19630106	19630107	+	0	NA	Intergenic	AluY|SINE|Alu	-119298	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr13.21872290.-	chr13	21872290	21872291	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-26	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr1.6471029.-	chr1	6471029	6471030	-	0	NA	Intergenic	Intergenic	-8950	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr9.16766075.-	chr9	16766075	16766076	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104711	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr2.123429987.-	chr2	123429987	123429988	-	0	NA	Intergenic	AluY|SINE|Alu	-916866	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr17.77768874.+	chr17	77768874	77768875	+	0	NA	"exon (NM_020649, exon 5 of 5)"	"exon (NM_020649, exon 5 of 5)"	2041	NM_020649	57332	Hs.387258	NM_020649		CBX8	PC3|RC1	chromobox homolog 8	protein-coding
chr19.22952288.-	chr19	22952288	22952289	-	0	NA	"intron (NM_001080409, intron 1 of 3)"	AluY|SINE|Alu	-14685	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr19.5409949.-	chr19	5409949	5409950	-	0	NA	Intergenic	AluY|SINE|Alu	45477	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr14.71374397.+	chr14	71374397	71374398	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	275	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr6.64944905.-	chr6	64944905	64944906	-	0	NA	"intron (NM_001142800, intron 30 of 42)"	AluSx1|SINE|Alu	-588474	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
chr14.80819646.+	chr14	80819646	80819647	+	0	NA	"intron (NR_038355, intron 2 of 8)"	AluY|SINE|Alu	-122249	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr17.8061014.-	chr17	8061014	8061015	-	0	NA	Intergenic	AluY|SINE|Alu	5261	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr20.17896821.-	chr20	17896821	17896822	-	0	NA	Intergenic	AluSz6|SINE|Alu	-46768	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	"small nucleolar RNA, C/D box 17"	snoRNA
chr16.87177366.+	chr16	87177366	87177367	+	0	NA	Intergenic	Intergenic	173660	NM_001256917	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr17.46187016.+	chr17	46187016	46187017	+	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	2069	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr12.7858618.-	chr12	7858618	7858619	-	0	NA	Intergenic	CpG	5471	NM_199286	359787	Hs.131358	NM_199286	ENSG00000187569	DPPA3	STELLA	developmental pluripotency associated 3	protein-coding
chr6.90432395.+	chr6	90432395	90432396	+	0	NA	"intron (NM_014611, intron 40 of 101)"	AluSq2|SINE|Alu	-83921	NM_020466	57226	Hs.177275	NM_020466	ENSG00000083099	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
chr15.37172793.+	chr15	37172793	37172794	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5941	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr12.54763510.+	chr12	54763510	54763511	+	0	NA	"3' UTR (NM_015481, exon 7 of 7)"	"3' UTR (NM_015481, exon 7 of 7)"	-5240	NM_020370	53831	Hs.306199	NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
chr8.11739658.-	chr8	11739658	11739659	-	0	NA	Intergenic	AluSx1|SINE|Alu	14012	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr2.92172347.-	chr2	92172347	92172348	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-43188	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr14.73209068.+	chr14	73209068	73209069	+	0	NA	"intron (NM_012074, intron 3 of 8)"	"intron (NM_012074, intron 3 of 8)"	151741	NM_012074	8110	Hs.162868	NM_012074	ENSG00000205683	DPF3	CERD4	"D4, zinc and double PHD fingers, family 3"	protein-coding
chr19.18632896.-	chr19	18632896	18632897	-	0	NA	promoter-TSS (NM_006532)	promoter-TSS (NM_006532)	-41	NM_006532	8178	Hs.515260	NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor RNA polymerase II	protein-coding
chr2.38825112.+	chr2	38825112	38825113	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5066	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr2.64811842.+	chr2	64811842	64811843	+	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	-22604	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr16.88261363.-	chr16	88261363	88261364	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	232516	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr16.402606.+	chr16	402606	402607	+	0	NA	promoter-TSS (NM_181050)	promoter-TSS (NM_181050)	70	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr19.19594716.-	chr19	19594716	19594717	-	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	-31753	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr15.59794873.+	chr15	59794873	59794874	+	0	NA	"intron (NM_152450, intron 4 of 8)"	AluSx1|SINE|Alu	64501	NM_152450	145773	Hs.531168	NM_152450	ENSG00000157470	FAM81A	-	"family with sequence similarity 81, member A"	protein-coding
chr4.26862261.-	chr4	26862261	26862262	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	52	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr20.44451700.-	chr20	44451700	44451701	-	0	NA	TTS (NM_003279)	TTS (NM_003279)	-4253	NM_003279	7125	Hs.182421	NM_003279	ENSG00000101470	TNNC2	-	troponin C type 2 (fast)	protein-coding
chr15.77590047.+	chr15	77590047	77590048	+	0	NA	"intron (NM_024776, intron 1 of 7)"	AluSc|SINE|Alu	-72301	NR_026813	81698	Hs.656938	NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	miscRNA
chr9.77401574.+	chr9	77401574	77401575	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100689	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr13.31735123.-	chr13	31735123	31735124	-	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	-994	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr18.38415911.-	chr18	38415911	38415912	-	0	NA	Intergenic	AluY|SINE|Alu	-684650	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr7.5629205.+	chr7	5629205	5629206	+	0	NA	Intergenic	AluJo|SINE|Alu	-3231	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr5.176579069.+	chr5	176579069	176579070	+	0	NA	"intron (NM_172349, intron 3 of 23)"	AluY|SINE|Alu	18236	NM_022455	64324	Hs.106861	NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
chr11.9243373.-	chr11	9243373	9243374	-	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	-43500	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr15.100514134.-	chr15	100514134	100514135	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167002	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr4.1400154.-	chr4	1400154	1400155	-	0	NA	Intergenic	CpG	-14814	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr7.127031908.+	chr7	127031908	127031909	+	0	NA	"intron (NM_176814, intron 1 of 5)"	CpG	859	NM_176814	168850	Hs.159006	NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
chr12.131521224.-	chr12	131521224	131521225	-	0	NA	"intron (NM_198827, intron 13 of 24)"	(CACCG)n|Simple_repeat|Simple_repeat	-82772	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr5.176482986.-	chr5	176482986	176482987	-	0	NA	"intron (NM_012279, intron 5 of 6)"	AluSx|SINE|Alu	30935	NM_213647	2264	Hs.165950	NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
chr22.50959130.-	chr22	50959130	50959131	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4903	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr8.144512810.+	chr8	144512810	144512811	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-208	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr3.128161118.-	chr3	128161118	128161119	-	0	NA	Intergenic	Intergenic	21319	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr1.41916701.-	chr1	41916701	41916702	-	0	NA	Intergenic	Intergenic	-33643	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr3.22843312.-	chr3	22843312	22843313	-	0	NA	Intergenic	L1PA2|LINE|L1	401472	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr4.65343995.+	chr4	65343995	65343996	+	0	NA	Intergenic	AluY|SINE|Alu	-68817	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr17.77899581.+	chr17	77899581	77899582	+	0	NA	Intergenic	Intergenic	25075	NM_001271844	125058	Hs.369819	NM_001271844		TBC1D16	-	"TBC1 domain family, member 16"	protein-coding
chr2.64811840.-	chr2	64811840	64811841	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22606	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr10.32238983.+	chr10	32238983	32238984	+	0	NA	Intergenic	AluY|SINE|Alu	-21179	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr10.131146833.-	chr10	131146833	131146834	-	0	NA	Intergenic	Intergenic	118621	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
chr1.31248119.+	chr1	31248119	31248120	+	0	NA	Intergenic	Intergenic	-17436	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr2.61306992.+	chr2	61306992	61306993	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13629	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr3.173023530.-	chr3	173023530	173023531	-	0	NA	Intergenic	AluYc|SINE|Alu	92714	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr19.2415940.-	chr19	2415940	2415941	-	0	NA	"intron (NM_182973, intron 10 of 16)"	"intron (NM_182973, intron 10 of 16)"	-11935	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr15.42300414.-	chr15	42300414	42300415	-	0	NA	"intron (NM_001206670, intron 2 of 19)"	"intron (NM_001206670, intron 2 of 19)"	35659	NM_139265	30844	Hs.143703	NM_139265	ENSG00000103966	EHD4	PAST4	EH-domain containing 4	protein-coding
chr22.43175084.+	chr22	43175084	43175085	+	0	NA	Intergenic	AluY|SINE|Alu	-58208	NM_017436	53947	Hs.105956	NM_017436		A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	"alpha 1,4-galactosyltransferase"	protein-coding
chr18.34900344.-	chr18	34900344	34900345	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	"intron (NM_001025089, intron 3 of 11)"	-245656	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr17.27070037.+	chr17	27070037	27070038	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-986	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr19.38755116.+	chr19	38755116	38755117	+	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	18	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr2.241330893.-	chr2	241330893	241330894	-	0	NA	Intergenic	Intergenic	44222	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr2.39267442.+	chr2	39267442	39267443	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79957	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr10.7626558.+	chr10	7626558	7626559	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35078	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr15.30396198.+	chr15	30396198	30396199	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	263	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr5.72678171.-	chr5	72678171	72678172	-	0	NA	Intergenic	CpG	-66181	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC4	forkhead box D1	protein-coding
chr16.89262477.+	chr16	89262477	89262478	+	0	NA	TTS (NM_004933)	TTS (NM_004933)	4052	NM_001242757	146429	Hs.743726	NM_001242757		SLC22A31	-	"solute carrier family 22, member 31"	protein-coding
chr15.50450615.+	chr15	50450615	50450616	+	0	NA	Intergenic	SVA_D|Other|Other	-23778	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	"solute carrier family 27 (fatty acid transporter), member 2"	protein-coding
chr2.191296180.+	chr2	191296180	191296181	+	0	NA	"intron (NM_017694, intron 2 of 7)"	SVA_D|Other|Other	23099	NM_017694	54842	Hs.744117	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
chr5.65481130.+	chr5	65481130	65481131	+	0	NA	Intergenic	AluSx|SINE|Alu	40467	NM_139168	140890	Hs.49367	NM_001077199	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamine/lysine-rich protein 1	protein-coding
chr16.21170098.+	chr16	21170098	21170099	+	0	NA	"intron (NM_020422, intron 1 of 4)"	CpG	186	NM_020422	57146	Hs.258212	NM_020422	ENSG00000011638	TMEM159	PROMETHIN	transmembrane protein 159	protein-coding
chr3.128194302.-	chr3	128194302	128194303	-	0	NA	Intergenic	Intergenic	8211	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr14.80915476.-	chr14	80915476	80915477	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218079	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr22.38336360.-	chr22	38336360	38336361	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13294	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr2.10220061.-	chr2	10220061	10220062	-	0	NA	"exon (NM_001037160, exon 1 of 3)"	"exon (NM_001037160, exon 1 of 3)"	-477	NM_001037160	192668	Hs.720471	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
chr4.124363987.+	chr4	124363987	124363988	+	0	NA	Intergenic	AluSx3|SINE|Alu	43342	NM_005841	10252	Hs.436944	NM_001258038	ENSG00000164056	SPRY1	hSPRY1	"sprouty homolog 1, antagonist of FGF signaling (Drosophila)"	protein-coding
chr16.69455169.-	chr16	69455169	69455170	-	0	NA	Intergenic	AluSq2|SINE|Alu	3329	NM_030579	80777	Hs.461131	NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B (outer mitochondrial membrane)	protein-coding
chr3.128161133.-	chr3	128161133	128161134	-	0	NA	Intergenic	Intergenic	21304	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr2.21484726.+	chr2	21484726	21484727	+	0	NA	Intergenic	Intergenic	-217781	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr7.12751301.+	chr7	12751301	12751302	+	0	NA	Intergenic	AluY|SINE|Alu	24390	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr4.1852242.-	chr4	1852242	1852243	-	0	NA	"intron (NM_012318, intron 1 of 13)"	"intron (NM_012318, intron 1 of 13)"	-5732	NM_012318	3954	Hs.120165	NM_012318	ENSG00000168924	LETM1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding
chr16.80278047.+	chr16	80278047	80278048	+	0	NA	Intergenic	SVA_F|Other|Other	-296807	NM_130897	83657	Hs.98849	NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	"dynein, light chain, roadblock-type 2"	protein-coding
chr2.131512940.-	chr2	131512940	131512941	-	0	NA	promoter-TSS (NM_001105193)	promoter-TSS (NM_001105193)	137	NM_152698	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chrX.137770400.+	chrX	137770400	137770401	+	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	-20446	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr3.47584514.-	chr3	47584514	47584515	-	0	NA	Intergenic	Intergenic	29315	NM_001031703	54859	Hs.311100	NM_017713	ENSG00000163832	ELP6	C3orf75|TMEM103	elongator acetyltransferase complex subunit 6	protein-coding
chr8.29303344.+	chr8	29303344	29303345	+	0	NA	Intergenic	AluSx3|SINE|Alu	-95077	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
chr10.135104695.+	chr10	135104695	135104696	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14288	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr19.1046746.+	chr19	1046746	1046747	+	0	NA	"intron (NM_019112, intron 13 of 46)"	CpG	6644	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr19.15718080.+	chr19	15718080	15718081	+	0	NA	Intergenic	AluY|SINE|Alu	-7949	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr2.38825120.+	chr2	38825120	38825121	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5058	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr10.71078331.+	chr10	71078331	71078332	+	0	NA	promoter-TSS (NM_000188)	promoter-TSS (NM_000188)	-272	NM_000188	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr7.128141923.-	chr7	128141923	128141924	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25140	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr16.68028282.+	chr16	68028282	68028283	+	0	NA	"intron (NM_022355, intron 1 of 10)"	"intron (NM_022355, intron 1 of 10)"	5139	NM_022355	64174	Hs.372633	NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
chr2.128975981.+	chr2	128975981	128975982	+	0	NA	Intergenic	AluSg|SINE|Alu	100190	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr11.68671203.-	chr11	68671203	68671204	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-100	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chrX.85551239.-	chrX	85551239	85551240	-	0	NA	"intron (NM_001139515, intron 1 of 11)"	AluY|SINE|Alu	-33268	NM_001139515	117154	Hs.86603	NM_001139514	ENSG00000126733	DACH2	-	dachshund homolog 2 (Drosophila)	protein-coding
chr16.5016337.-	chr16	5016337	5016338	-	0	NA	"intron (NM_014692, intron 2 of 15)"	AluSx1|SINE|Alu	-8019	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14-like 5 (S. cerevisiae)	protein-coding
chr11.73486272.+	chr11	73486272	73486273	+	0	NA	Intergenic	SVA_C|Other|Other	-12645	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr1.9517577.-	chr1	9517577	9517578	-	0	NA	Intergenic	AluJb|SINE|Alu	81951	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr1.161508235.-	chr1	161508235	161508236	-	0	NA	Intergenic	AluYf4|SINE|Alu	-11583	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr21.11107091.-	chr21	11107091	11107092	-	0	NA	Intergenic	CpG	8154	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr1.32122100.+	chr1	32122100	32122101	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11262	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr18.14856555.+	chr18	14856555	14856556	+	0	NA	Intergenic	SVA_F|Other|Other	26390	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	miscRNA
chr3.81714542.-	chr3	81714542	81714543	-	0	NA	"intron (NM_000158, intron 3 of 15)"	AluY|SINE|Alu	-96408	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr4.47673795.-	chr4	47673795	47673796	-	0	NA	"intron (NM_006587, intron 10 of 21)"	AluY|SINE|Alu	-166264	NM_006587	10699	Hs.518618	NM_006587	ENSG00000145244	CORIN	ATC2|CRN|Lrp4|PEE5|TMPRSS10	"corin, serine peptidase"	protein-coding
chr11.6495478.+	chr11	6495478	6495479	+	0	NA	promoter-TSS (NM_001248007)	promoter-TSS (NM_001248007)	211	NM_001248006	10612	Hs.591992	NM_001248006	ENSG00000110171	TRIM3	BERP|HAC1|RNF22|RNF97	tripartite motif containing 3	protein-coding
chr8.70401946.-	chr8	70401946	70401947	-	0	NA	"intron (NM_001128204, intron 1 of 21)"	AluY|SINE|Alu	3082	NM_001128206	23213	Hs.409602	NM_001128204	ENSG00000137573	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
chr17.73584667.-	chr17	73584667	73584668	-	0	NA	"non-coding (NR_003587, exon 1 of 61)"	"non-coding (NR_003587, exon 1 of 61)"	-528	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000188126	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
chr12.66491285.-	chr12	66491285	66491286	-	0	NA	Intergenic	AluY|SINE|Alu	-33248	NM_032338	84298	Hs.504820	NM_032338	ENSG00000139233	LLPH	C12orf31|hLLP	"LLP homolog, long-term synaptic facilitation (Aplysia)"	protein-coding
chr2.157190699.+	chr2	157190699	157190700	+	0	NA	Intergenic	CpG	-1412	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr8.143373435.+	chr8	143373435	143373436	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93718	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr2.26781435.+	chr2	26781435	26781436	+	0	NA	"exon (NM_194248, exon 1 of 47)"	"exon (NM_194248, exon 1 of 47)"	131	NM_194248	9381	Hs.91608	NM_004802	ENSG00000115155	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
chr16.49892634.+	chr16	49892634	49892635	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-804	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr18.25755595.+	chr18	25755595	25755596	+	0	NA	"intron (NM_001792, intron 1 of 15)"	CpG	1850	NM_001792	1000	Hs.606106	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	"cadherin 2, type 1, N-cadherin (neuronal)"	protein-coding
chr19.10756895.-	chr19	10756895	10756896	-	0	NA	Intergenic	AluSg|SINE|Alu	-7653	NR_024333	147727	Hs.631616	NR_024333	ENSG00000267100	ILF3-AS1	-	ILF3 antisense RNA 1 (head to head)	miscRNA
chr2.240402024.+	chr2	240402024	240402025	+	0	NA	Intergenic	Intergenic	-79381	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr3.15431324.-	chr3	15431324	15431325	-	0	NA	Intergenic	AluSp|SINE|Alu	-37718	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr13.31307212.+	chr13	31307212	31307213	+	0	NA	"intron (NM_001204406, intron 1 of 5)"	AluY|SINE|Alu	-2433	NM_001629	241	Hs.507658	NM_001204406	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
chr11.17905660.-	chr11	17905660	17905661	-	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	-128977	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr21.43109584.+	chr21	43109584	43109585	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10122	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr12.11974524.-	chr12	11974524	11974525	-	0	NA	"intron (NR_046487, intron 1 of 3)"	AluJr|SINE|Alu	-104583	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19	-	"RNA, U6 small nuclear 19"	snRNA
chr11.67351088.-	chr11	67351088	67351089	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-22	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr14.34667844.+	chr14	34667844	34667845	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247560	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr16.27160392.+	chr16	27160392	27160393	+	0	NA	Intergenic	AluJb|SINE|Alu	-54415	NM_024773	79831	Hs.145717	NM_001145348	ENSG00000155666	KDM8	JMJD5	lysine (K)-specific demethylase 8	protein-coding
chr4.3495722.+	chr4	3495722	3495723	+	0	NA	"3' UTR (NM_001256896, exon 4 of 4)"	"3' UTR (NM_001256896, exon 4 of 4)"	9451	NM_001256896	285489	Hs.701584	NM_001164673	ENSG00000175920	DOK7	C4orf25|CMS1B	docking protein 7	protein-coding
chr8.144503713.-	chr8	144503713	144503714	-	0	NA	Intergenic	CpG	-8889	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr19.49186324.-	chr19	49186324	49186325	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10060	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr14.37124366.-	chr14	37124366	37124367	-	0	NA	Intergenic	Intergenic	2407	NM_006194	5083	Hs.609574	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
chrX.81762770.-	chrX	81762770	81762771	-	0	NA	Intergenic	AluY|SINE|Alu	1000499	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr12.12518367.+	chr12	12518367	12518368	+	0	NA	"intron (NM_058169, intron 2 of 3)"	AluJb|SINE|Alu	8347	NM_058169	118426	Hs.720779	NM_058169	ENSG00000165714	LOH12CR1	LOH1CR12	"loss of heterozygosity, 12, chromosomal region 1"	protein-coding
chr6.168219499.+	chr6	168219499	168219500	+	0	NA	Intergenic	AluSp|SINE|Alu	7977	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr13.68791136.-	chr13	68791136	68791137	-	0	NA	Intergenic	AluY|SINE|Alu	-668321	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr1.3078809.+	chr1	3078809	3078810	+	0	NA	"intron (NM_199454, intron 1 of 16)"	L1MB4|LINE|L1	34270	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr22.31732686.-	chr22	31732686	31732687	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9563	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr17.36469111.+	chr17	36469111	36469112	+	0	NA	"intron (NM_032351, intron 4 of 7)"	AluY|SINE|Alu	16122	NM_032351	84311	Hs.744110	NM_032351	ENSG00000174100	MRPL45	L45mt|MRP-L45	mitochondrial ribosomal protein L45	protein-coding
chr6.165953233.+	chr6	165953233	165953234	+	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	122355	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr19.46987855.-	chr19	46987855	46987856	-	0	NA	"intron (NM_001205281, intron 3 of 3)"	AluSx|SINE|Alu	-11314	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
chr14.23233293.-	chr14	23233293	23233294	-	0	NA	Intergenic	AluSq2|SINE|Alu	2438	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr3.9429722.+	chr3	9429722	9429723	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9452	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr9.21968324.+	chr9	21968324	21968325	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1186	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr2.207270698.-	chr2	207270698	207270699	-	0	NA	Intergenic	AluY|SINE|Alu	37670	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr4.55034962.+	chr4	55034962	55034963	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60302	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr18.11959843.+	chr18	11959843	11959844	+	0	NA	Intergenic	SVA_D|Other|Other	-21584	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr18.73985175.+	chr18	73985175	73985176	+	0	NA	Intergenic	Intergenic	150222	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	miscRNA
chr16.30810962.+	chr16	30810962	30810963	+	0	NA	Intergenic	AluSx|SINE|Alu	-12439	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr10.6985557.-	chr10	6985557	6985558	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163997	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr9.116102483.+	chr9	116102483	116102484	+	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	137	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr3.42630491.+	chr3	42630491	42630492	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1807	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr1.226323698.-	chr1	226323698	226323699	-	0	NA	Intergenic	Intergenic	-50725	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr10.17622284.-	chr10	17622284	17622285	-	0	NA	Intergenic	AluY|SINE|Alu	-37089	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr3.195498025.+	chr3	195498025	195498026	+	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	40819	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr4.84233723.+	chr4	84233723	84233724	+	0	NA	"intron (NM_001199830, intron 3 of 10)"	AluY|SINE|Alu	22243	NM_001199830	10855	Hs.44227	NM_001098540	ENSG00000173083	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
chr16.28435298.+	chr16	28435298	28435299	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2477	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr22.38498785.+	chr22	38498785	38498786	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7891	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr4.1621062.+	chr4	1621062	1621063	+	0	NA	Intergenic	Intergenic	64656	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr2.85830128.-	chr2	85830128	85830129	-	0	NA	promoter-TSS (NM_001031738)	promoter-TSS (NM_001031738)	-163	NR_046347	10713	Hs.654745	NM_001256725	ENSG00000168883	USP39	65K|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
chr5.176108379.+	chr5	176108379	176108380	+	0	NA	Intergenic	AluSc|SINE|Alu	33991	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chrX.32910712.+	chrX	32910712	32910713	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127605	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr14.78273467.-	chr14	78273467	78273468	-	0	NA	"intron (NM_001142545, intron 1 of 9)"	AluYa5|SINE|Alu	-7041	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr10.43563294.-	chr10	43563294	43563295	-	0	NA	Intergenic	Intergenic	9223	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr12.96314639.+	chr12	96314639	96314640	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21789	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr16.87910842.+	chr16	87910842	87910843	+	0	NA	Intergenic	AluY|SINE|Alu	-7742	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr2.106682187.-	chr2	106682187	106682188	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-74	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr9.96711955.+	chr9	96711955	96711956	+	0	NA	Intergenic	Intergenic	5653	NM_021570	56033	Hs.164960	NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
chr7.2508344.-	chr7	2508344	2508345	-	0	NA	Intergenic	MIRc|SINE|MIR	43819	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr19.3958651.+	chr19	3958651	3958652	+	0	NA	"3' UTR (NM_001348, exon 8 of 8)"	"3' UTR (NM_001348, exon 8 of 8)"	2859	NR_030367	693222		NR_030367		MIR637	MIRN637|hsa-mir-637	microRNA 637	miscRNA
chr1.61398374.-	chr1	61398374	61398375	-	0	NA	Intergenic	AluY|SINE|Alu	144572	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr12.8830980.-	chr12	8830980	8830981	-	0	NA	Intergenic	AluSp|SINE|Alu	15547	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr12.105389749.+	chr12	105389749	105389750	+	0	NA	Intergenic	AluY|SINE|Alu	9651	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr17.78021118.-	chr17	78021118	78021119	-	0	NA	"exon (NM_001243342, exon 4 of 18)"	"exon (NM_001243342, exon 4 of 18)"	-10687	NM_017950	55036	Hs.202542	NM_001243342	ENSG00000141519	CCDC40	CILD15	coiled-coil domain containing 40	protein-coding
chr6.34857449.-	chr6	34857449	34857450	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-411	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr8.143356702.+	chr8	143356702	143356703	+	0	NA	"intron (NM_145003, intron 11 of 13)"	"intron (NM_145003, intron 11 of 13)"	76985	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr3.195498050.-	chr3	195498050	195498051	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40794	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr5.178157725.-	chr5	178157725	178157726	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	22	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr2.126700685.-	chr2	126700685	126700686	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712826	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr5.140315611.-	chr5	140315611	140315612	-	0	NA	"intron (NM_018898, intron 1 of 3)"	AluSx1|SINE|Alu	-9309	NM_018898	56135	Hs.199343	NM_018898	ENSG00000248383	PCDHAC1	PCDH-ALPHA-C1	"protocadherin alpha subfamily C, 1"	protein-coding
chr2.25390976.+	chr2	25390976	25390977	+	0	NA	"intron (NM_001035256, intron 1 of 3)"	AluSp|SINE|Alu	583	NM_000939	5443	Hs.1897	NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
chr15.65715273.-	chr15	65715273	65715274	-	0	NA	"5' UTR (NM_020962, exon 1 of 20)"	"5' UTR (NM_020962, exon 1 of 20)"	-137	NM_020962	57722	Hs.458607	NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	"immunoglobulin superfamily, DCC subclass, member 4"	protein-coding
chr2.62423174.-	chr2	62423174	62423175	-	0	NA	promoter-TSS (NM_006577)	promoter-TSS (NM_006577)	88	NM_006577	10678	Hs.173203	NM_006577	ENSG00000170340	B3GNT2	B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2"	protein-coding
chr19.14096034.-	chr19	14096034	14096035	-	0	NA	"intron (NM_002918, intron 2 of 20)"	AluSz6|SINE|Alu	-21100	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chr2.203368163.-	chr2	203368163	203368164	-	0	NA	"intron (NM_001204, intron 3 of 12)"	LTR12C|LTR|ERV1	-127113	NM_001204	659	Hs.471119	NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|PPH1|T-ALK	"bone morphogenetic protein receptor, type II (serine/threonine kinase)"	protein-coding
chr20.35167611.-	chr20	35167611	35167612	-	0	NA	Intergenic	AluY|SINE|Alu	2276	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr4.185174122.-	chr4	185174122	185174123	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35008	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr2.233477529.+	chr2	233477529	233477530	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6762	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr2.38604022.-	chr2	38604022	38604023	-	0	NA	"intron (NM_022374, intron 1 of 12)"	CpG	-410	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr8.144503723.+	chr8	144503723	144503724	+	0	NA	Intergenic	CpG	8879	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr6.7479177.+	chr6	7479177	7479178	+	0	NA	Intergenic	Intergenic	-62693	NM_001008844	1832	Hs.519873	NM_001008844	ENSG00000096696	DSP	DP|DPI|DPII	desmoplakin	protein-coding
chr18.48196346.-	chr18	48196346	48196347	-	0	NA	"intron (NM_002747, intron 2 of 5)"	AluY|SINE|Alu	-109862	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr4.96098063.+	chr4	96098063	96098064	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85421	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr21.45566099.-	chr21	45566099	45566100	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12605	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr6.46742412.-	chr6	46742412	46742413	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18682	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr15.27791939.-	chr15	27791939	27791940	-	0	NA	Intergenic	AluJo|SINE|Alu	-552519	NM_000275	4948	Hs.654411	NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
chrX.3607790.-	chrX	3607790	3607791	-	0	NA	"intron (NM_005044, intron 1 of 8)"	AluY|SINE|Alu	-23885	NM_005044	5613	Hs.390788	NM_005044	ENSG00000183943	PRKX	PKX1	"protein kinase, X-linked"	protein-coding
chr2.242530368.-	chr2	242530368	242530369	-	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	-26548	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr18.31802640.-	chr18	31802640	31802641	-	0	NA	promoter-TSS (NM_001198547)	promoter-TSS (NM_001198547)	206	NR_036752	8715	Hs.514795	NM_001198546	ENSG00000101746	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
chr3.48117740.-	chr3	48117740	48117741	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-13029	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr9.8858136.+	chr9	8858136	8858137	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124190	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr16.69735141.+	chr16	69735141	69735142	+	0	NA	"3' UTR (NM_001113178, exon 15 of 15)"	"3' UTR (NM_001113178, exon 15 of 15)"	25392	NM_001025434	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	"NAD(P)H dehydrogenase, quinone 1"	protein-coding
chr9.113404462.+	chr9	113404462	113404463	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26589	NM_001166281	4593	Hs.521653	NM_001166280	ENSG00000030304	MUSK	-	"muscle, skeletal, receptor tyrosine kinase"	protein-coding
chr5.694051.+	chr5	694051	694052	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-541	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr8.26241054.-	chr8	26241054	26241055	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-531	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr11.64631357.+	chr11	64631357	64631358	+	0	NA	"intron (NM_006795, intron 2 of 4)"	"intron (NM_006795, intron 2 of 4)"	14834	NM_006795	10938	Hs.523774	NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH-domain containing 1	protein-coding
chr1.25736509.+	chr1	25736509	25736510	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10854	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr1.217697505.+	chr1	217697505	217697506	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106904	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr11.89400839.-	chr11	89400839	89400840	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8374	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr18.63211107.-	chr18	63211107	63211108	-	0	NA	Intergenic	AluY|SINE|Alu	206381	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr9.136951683.+	chr9	136951683	136951684	+	0	NA	Intergenic	AluY|SINE|Alu	-18542	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr12.34191938.+	chr12	34191938	34191939	+	0	NA	Intergenic	AluSp|SINE|Alu	16722	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr7.22396537.-	chr7	22396537	22396538	-	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	4	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr6.89378034.+	chr6	89378034	89378035	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295314	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr22.46522765.-	chr22	46522765	46522766	-	0	NA	Intergenic	Intergenic	-13199	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr1.212371358.-	chr1	212371358	212371359	-	0	NA	Intergenic	AluY|SINE|Alu	87521	NM_006243	5525	Hs.744012	NM_001199756	ENSG00000066027	PPP2R5A	B56A|PR61A	"protein phosphatase 2, regulatory subunit B', alpha"	protein-coding
chr6.33811440.-	chr6	33811440	33811441	-	0	NA	Intergenic	LTR33|LTR|ERVL	39647	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr5.177538225.+	chr5	177538225	177538226	+	0	NA	Intergenic	AluSp|SINE|Alu	-2331	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr7.33176808.-	chr7	33176808	33176809	-	0	NA	"intron (NM_014451, intron 1 of 20)"	MER52D|LTR|ERV1	-7656	NM_001033605	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr11.31560739.+	chr11	31560739	31560740	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29442	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr6.46742431.-	chr6	46742431	46742432	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18663	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr3.196367646.+	chr3	196367646	196367647	+	0	NA	"intron (NM_198565, intron 1 of 2)"	"intron (NM_198565, intron 1 of 2)"	990	NM_198565	375387	Hs.702186	NM_198565	ENSG00000174004	LRRC33	GARPL1|UNQ3030	leucine rich repeat containing 33	protein-coding
chr7.6388358.+	chr7	6388358	6388359	+	0	NA	"5' UTR (NM_001037163, exon 1 of 2)"	"5' UTR (NM_001037163, exon 1 of 2)"	232	NM_001037163	84792	Hs.696146	NM_001037163	ENSG00000178397	FAM220A	C7orf70|SIPAR	"family with sequence similarity 220, member A"	protein-coding
chr4.1626789.-	chr4	1626789	1626790	-	0	NA	Intergenic	CpG	-58929	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr19.42758978.-	chr19	42758978	42758979	-	0	NA	"intron (NM_006494, intron 1 of 3)"	CpG	-331	NM_006494	2077	Hs.655969	NM_006494	ENSG00000105722	ERF	PE-2|PE2	Ets2 repressor factor	protein-coding
chr8.67618046.+	chr8	67618046	67618047	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6607	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr4.4878222.+	chr4	4878222	4878223	+	0	NA	Intergenic	L1PA8|LINE|L1	16830	NM_002448	4487	Hs.424414	NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
chr9.10974648.+	chr9	10974648	10974649	+	0	NA	Intergenic	L1PBa|LINE|L1	-361925	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.10168911.+	chr2	10168911	10168912	+	0	NA	Intergenic	Intergenic	-14771	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr5.178491470.-	chr5	178491470	178491471	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3863	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr7.382336.-	chr7	382336	382337	-	0	NA	Intergenic	Intergenic	37055	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr2.101214332.-	chr2	101214332	101214333	-	0	NA	Intergenic	AluY|SINE|Alu	-34914	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr1.14702206.+	chr1	14702206	14702207	+	0	NA	Intergenic	AluY|SINE|Alu	-223007	NM_015209	23254	Hs.368823	NM_001017999	ENSG00000189337	KAZN	KAZ	"kazrin, periplakin interacting protein"	protein-coding
chr1.26591559.+	chr1	26591559	26591560	+	0	NA	"intron (NM_022778, intron 7 of 13)"	AluSx1|SINE|Alu	-14654	NM_031286	83442	Hs.109051	NM_031286		SH3BGRL3	SH3BP-1|TIP-B1	SH3 domain binding glutamic acid-rich protein like 3	protein-coding
chr2.47660359.+	chr2	47660359	47660360	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30153	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr7.104040185.-	chr7	104040185	104040186	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71081	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr8.103501902.+	chr8	103501902	103501903	+	0	NA	Intergenic	Intergenic	-61946	NM_024410	4956	Hs.159274	NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
chr14.106165462.-	chr14	106165462	106165463	-	0	NA	Intergenic	Intergenic	26318	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	"ELK2A, member of ETS oncogene family, pseudogene"	pseudo
chrX.25924014.+	chrX	25924014	25924015	+	0	NA	Intergenic	SVA_B|Other|Other	-232446	NM_173699	286514	Hs.350683	NM_173699	ENSG00000176774	MAGEB18	-	"melanoma antigen family B, 18"	protein-coding
chr7.30535762.+	chr7	30535762	30535763	+	0	NA	TTS (NM_024051)	TTS (NM_024051)	8695	NM_001199815	79017	Hs.530024	NM_001199815	ENSG00000006625	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
chr2.157198790.-	chr2	157198790	157198791	-	0	NA	Intergenic	CpG	9503	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr8.6812633.+	chr8	6812633	6812634	+	0	NA	Intergenic	AluSp|SINE|Alu	-3512	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr12.131419256.+	chr12	131419256	131419257	+	0	NA	Intergenic	AluSz|SINE|Alu	-19196	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr5.18111564.+	chr5	18111564	18111565	+	0	NA	Intergenic	AluY|SINE|Alu	-724145	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr3.196618962.+	chr3	196618962	196618963	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluJb|SINE|Alu	24235	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr8.12476347.-	chr8	12476347	12476348	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46773	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr11.45810360.-	chr11	45810360	45810361	-	0	NA	Intergenic	AluSz6|SINE|Alu	15263	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr6.127738582.+	chr6	127738582	127738583	+	0	NA	Intergenic	AluY|SINE|Alu	41953	NM_014702	9729	Hs.319247	NM_014702		KIAA0408	RP3-403A15.2	KIAA0408	protein-coding
chr20.62512953.-	chr20	62512953	62512954	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13502	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr2.97168909.-	chr2	97168909	97168910	-	0	NA	"intron (NR_026875, intron 1 of 3)"	"intron (NR_026875, intron 1 of 3)"	-4937	NR_026875	93082	Hs.149219	NR_026875	ENSG00000163121	NEURL3	LINCR	neuralized homolog 3 (Drosophila) pseudogene	pseudo
chr2.131551988.+	chr2	131551988	131551989	+	0	NA	Intergenic	AluY|SINE|Alu	38124	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr15.43398256.+	chr15	43398256	43398257	+	0	NA	promoter-TSS (NM_174916)	promoter-TSS (NM_174916)	30	NM_174916	197131	Hs.591121	NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
chr16.3109375.-	chr16	3109375	3109376	-	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	5938	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr14.32736858.-	chr14	32736858	32736859	-	0	NA	Intergenic	AluY|SINE|Alu	61621	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
chr2.240402008.+	chr2	240402008	240402009	+	0	NA	Intergenic	Intergenic	-79365	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr20.37383125.+	chr20	37383125	37383126	+	0	NA	"intron (NM_024855, intron 3 of 8)"	AluY|SINE|Alu	6028	NM_024855	79913	Hs.371585	NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	ARP5 actin-related protein 5 homolog (yeast)	protein-coding
chr8.22594669.-	chr8	22594669	22594670	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43854	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chrX.13630780.-	chrX	13630780	13630781	-	0	NA	"intron (NM_001167890, intron 7 of 11)"	SVA_B|Other|Other	40527	NM_152634	170082	Hs.737398	NM_152634	ENSG00000176896	TCEANC	-	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding
chr17.56032629.+	chr17	56032629	56032630	+	0	NA	promoter-TSS (NM_001271875)	promoter-TSS (NM_001271875)	55	NM_001271875	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
chr1.220909474.+	chr1	220909474	220909475	+	0	NA	Intergenic	AluSc|SINE|Alu	-12202	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr12.57566242.+	chr12	57566242	57566243	+	0	NA	"intron (NM_002332, intron 20 of 88)"	AluY|SINE|Alu	-22045	NR_031597	100302201		NR_031597		MIR1228	MIRN1228|hsa-mir-1228	microRNA 1228	miscRNA
chr7.99869454.+	chr7	99869454	99869455	+	0	NA	"intron (NM_178831, intron 1 of 4)"	CpG	401	NR_028038	352954	Hs.556063	NM_178831	ENSG00000160844	GATS	STAG3OS	"GATS, stromal antigen 3 opposite strand"	protein-coding
chr16.87910826.-	chr16	87910826	87910827	-	0	NA	Intergenic	AluY|SINE|Alu	7726	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr13.100934712.-	chr13	100934712	100934713	-	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	-193443	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr20.18441256.-	chr20	18441256	18441257	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6573	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr14.107211153.+	chr14	107211153	107211154	+	0	NA	Intergenic	Intergenic	272698	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	miscRNA
chr2.210525371.+	chr2	210525371	210525372	+	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	80968	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr6.4780643.+	chr6	4780643	4780644	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3963	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr19.46966401.+	chr19	46966401	46966402	+	0	NA	Intergenic	AluSz|SINE|Alu	8419	NM_018215	55228	Hs.8395	NM_001103149	ENSG00000182013	PNMAL1	-	paraneoplastic Ma antigen family-like 1	protein-coding
chr9.88491257.-	chr9	88491257	88491258	-	0	NA	Intergenic	AluYc|SINE|Alu	64800	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr16.632072.-	chr16	632072	632073	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7285	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr8.21944374.-	chr8	21944374	21944375	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2340	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chrX.81762779.-	chrX	81762779	81762780	-	0	NA	Intergenic	AluY|SINE|Alu	1000490	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr22.31792837.-	chr22	31792837	31792838	-	0	NA	Intergenic	AluJr4|SINE|Alu	2702	NM_004147	4733	Hs.115242	NM_004147	ENSG00000185721	DRG1	NEDD3	developmentally regulated GTP binding protein 1	protein-coding
chr19.49186329.-	chr19	49186329	49186330	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10065	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr9.137721563.+	chr9	137721563	137721564	+	0	NA	"intron (NM_000093, intron 63 of 65)"	"intron (NM_000093, intron 63 of 65)"	19652	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr2.21484595.-	chr2	21484595	21484596	-	0	NA	Intergenic	Intergenic	217650	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr5.693984.+	chr5	693984	693985	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-474	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr12.118663871.+	chr12	118663871	118663872	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	90001	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr16.50142553.-	chr16	50142553	50142554	-	0	NA	Intergenic	AluSz6|SINE|Alu	-42672	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr16.54578192.+	chr16	54578192	54578193	+	0	NA	Intergenic	AluYa5|SINE|Alu	-257814	NM_024336	79191	Hs.499205	NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
chrX.67548243.-	chrX	67548243	67548244	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105056	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr17.72262231.+	chr17	72262231	72262232	+	0	NA	Intergenic	AluJb|SINE|Alu	-8155	NM_023036	64446	Hs.147472	NM_001172810	ENSG00000171595	DNAI2	CILD9|DIC2	"dynein, axonemal, intermediate chain 2"	protein-coding
chr6.151771579.-	chr6	151771579	151771580	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1737	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr7.124427339.-	chr7	124427339	124427340	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3525	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr10.134216453.+	chr10	134216453	134216454	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5751	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr12.133366782.-	chr12	133366782	133366783	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28331	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr13.20343667.+	chr13	20343667	20343668	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13492	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr21.35774245.-	chr21	35774245	35774246	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26496	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr11.92637340.+	chr11	92637340	92637341	+	0	NA	Intergenic	AluY|SINE|Alu	-65449	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr11.47459670.+	chr11	47459670	47459671	+	0	NA	"intron (NM_032645, intron 5 of 5)"	"intron (NM_032645, intron 5 of 5)"	11060	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
chr9.133797636.-	chr9	133797636	133797637	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-16603	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr20.36619901.-	chr20	36619901	36619902	-	0	NA	"intron (NM_014657, intron 8 of 8)"	"intron (NM_014657, intron 8 of 8)"	-41932	NM_014657	9675	Hs.655481	NM_014657	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
chr17.26858813.+	chr17	26858813	26858814	+	0	NA	"intron (NM_003593, intron 5 of 7)"	"intron (NM_003593, intron 5 of 7)"	7854	NM_003593	8456	Hs.663679	NM_003593		FOXN1	FKHL20|RONU|WHN	forkhead box N1	protein-coding
chr10.121302722.+	chr10	121302722	121302723	+	0	NA	promoter-TSS (NM_001005339)	promoter-TSS (NM_001005339)	-500	NM_001005339	6001	Hs.501200	NM_001005339	ENSG00000148908	RGS10	-	regulator of G-protein signaling 10	protein-coding
chr4.166248609.+	chr4	166248609	166248610	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-209	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.212371321.-	chr1	212371321	212371322	-	0	NA	Intergenic	AluY|SINE|Alu	87558	NM_006243	5525	Hs.744012	NM_001199756	ENSG00000066027	PPP2R5A	B56A|PR61A	"protein phosphatase 2, regulatory subunit B', alpha"	protein-coding
chr20.46387680.-	chr20	46387680	46387681	-	0	NA	"intron (NM_198596, intron 1 of 20)"	"intron (NM_198596, intron 1 of 20)"	-27128	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr2.101924981.-	chr2	101924981	101924982	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-197	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr1.36675725.-	chr1	36675725	36675726	-	0	NA	Intergenic	AluSc8|SINE|Alu	14292	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
chr4.99917367.+	chr4	99917367	99917368	+	0	NA	"intron (NM_015143, intron 1 of 10)"	CpG	579	NM_015143	23173	Hs.480364	NM_015143	ENSG00000164024	METAP1	MAP1A|MetAP1A	methionyl aminopeptidase 1	protein-coding
chr22.50871772.-	chr22	50871772	50871773	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41692	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr13.21894205.+	chr13	21894205	21894206	+	0	NA	"intron (NR_046461, intron 2 of 4)"	CpG	21941	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr3.136119395.-	chr3	136119395	136119396	-	0	NA	"intron (NM_005862, intron 21 of 33)"	AluSx1|SINE|Alu	-150228	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chrX.40029671.-	chrX	40029671	40029672	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6911	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr18.72799752.+	chr18	72799752	72799753	+	0	NA	Intergenic	CpG	121529	NM_175907	284273	Hs.465433	NM_175907		ZADH2	-	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
chr21.33170763.+	chr21	33170763	33170764	+	0	NA	Intergenic	AluSg|SINE|Alu	-66332	NM_001145444	57466	Hs.17255	NM_001145444	ENSG00000156304	SCAF4	SFRS15|SRA4	SR-related CTD-associated factor 4	protein-coding
chr17.1226129.+	chr17	1226129	1226130	+	0	NA	Intergenic	AluSx|SINE|Alu	43172	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr1.6051338.+	chr1	6051338	6051339	+	0	NA	"intron (NM_015102, intron 1 of 29)"	"intron (NM_015102, intron 1 of 29)"	-1020	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr1.6132031.+	chr1	6132031	6132032	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25857	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr5.694036.+	chr5	694036	694037	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-526	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr7.158462316.-	chr7	158462316	158462317	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35204	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr17.25932694.+	chr17	25932694	25932695	+	0	NA	"exon (NM_014238, exon 15 of 21)"	"exon (NM_014238, exon 15 of 21)"	-25480	NR_024043	3965	Hs.81337	NM_002308		LGALS9	HUAT|LGALS9A	"lectin, galactoside-binding, soluble, 9"	protein-coding
chr14.83280563.-	chr14	83280563	83280564	-	0	NA	Intergenic	SVA_D|Other|Other	1280358	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr2.64811853.-	chr2	64811853	64811854	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22593	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr11.120428554.+	chr11	120428554	120428555	+	0	NA	Intergenic	AluY|SINE|Alu	-102474	NM_014619	2900	Hs.568901	NM_014619		GRIK4	EAA1|GRIK|GluK4|KA1	"glutamate receptor, ionotropic, kainate 4"	protein-coding
chr5.78890178.+	chr5	78890178	78890179	+	0	NA	Intergenic	AluY|SINE|Alu	-18065	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr22.38531081.+	chr22	38531081	38531082	+	0	NA	"exon (NM_001199562, exon 6 of 16)"	"exon (NM_001199562, exon 6 of 16)"	-24405	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr2.99878850.-	chr2	99878850	99878851	-	0	NA	Intergenic	AluY|SINE|Alu	7280	NM_175735	254773	Hs.436468	NM_175735	ENSG00000185674	LYG2	LYGH	lysozyme G-like 2	protein-coding
chr22.18477406.-	chr22	18477406	18477407	-	0	NA	"intron (NM_001136004, intron 1 of 22)"	AluJb|SINE|Alu	13679	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	miscRNA
chr15.64212393.+	chr15	64212393	64212394	+	0	NA	"intron (NM_014326, intron 9 of 11)"	L1MEd|LINE|L1	-86246	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
chr13.111268058.-	chr13	111268058	111268059	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-127	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr2.242512512.-	chr2	242512512	242512513	-	0	NA	"3' UTR (NM_032515, exon 5 of 5)"	"3' UTR (NM_032515, exon 5 of 5)"	13954	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr22.17719103.-	chr22	17719103	17719104	-	0	NA	Intergenic	AluSg|SINE|Alu	28324	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chrX.112142819.-	chrX	112142819	112142820	-	0	NA	Intergenic	AluY|SINE|Alu	58776	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr17.43255875.+	chr17	43255875	43255876	+	0	NA	Intergenic	AluY|SINE|Alu	17611	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr8.23131060.+	chr8	23131060	23131061	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14552	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr13.33775018.-	chr13	33775018	33775019	-	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	-5169	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr2.101747958.-	chr2	101747958	101747959	-	0	NA	"intron (NM_001102426, intron 1 of 19)"	AluSp|SINE|Alu	-19888	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	"TBC1 domain family, member 8 (with GRAM domain)"	protein-coding
chr10.124093975.+	chr10	124093975	124093976	+	0	NA	"intron (NM_144587, intron 13 of 15)"	AluY|SINE|Alu	-40119	NM_001001974	59338	Hs.738826	NM_001001974	ENSG00000107679	PLEKHA1	TAPP1	"pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1"	protein-coding
chr22.39040960.+	chr22	39040960	39040961	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11674	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr9.6608164.+	chr9	6608164	6608165	+	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	37528	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr5.36872512.-	chr5	36872512	36872513	-	0	NA	"non-coding (NR_046262, exon 1 of 1)"	"non-coding (NR_046262, exon 1 of 1)"	-4284	NR_046262	646719	Hs.355684	NR_046262		LOC646719	-	uncharacterized LOC646719	miscRNA
chr1.224239345.+	chr1	224239345	224239346	+	0	NA	Intergenic	AluSq2|SINE|Alu	-62444	NR_049764	23219	Hs.64691	NM_001136115	ENSG00000143756	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
chr5.179167542.-	chr5	179167542	179167543	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7691	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr22.45845272.-	chr22	45845272	45845273	-	0	NA	Intergenic	AluSz6|SINE|Alu	-35700	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11	RIB43A domain with coiled-coils 2	protein-coding
chr9.94867881.+	chr9	94867881	94867882	+	0	NA	"intron (NM_178324, intron 3 of 5)"	SVA_F|Other|Other	9809	NM_178324	10558	Hs.90458	NM_006415	ENSG00000090054	SPTLC1	HSAN|HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI|hLCB1	"serine palmitoyltransferase, long chain base subunit 1"	protein-coding
chr7.1286177.-	chr7	1286177	1286178	-	0	NA	Intergenic	CpG	-13523	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chrX.132930066.+	chrX	132930066	132930067	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189607	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr11.2213957.+	chr11	2213957	2213958	+	0	NA	Intergenic	Intergenic	19664	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr20.47194495.+	chr20	47194495	47194496	+	0	NA	Intergenic	Intergenic	205841	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr16.88643849.+	chr16	88643849	88643850	+	0	NA	"exon (NM_144604, exon 2 of 18)"	"exon (NM_144604, exon 2 of 18)"	7060	NM_144604	124245	Hs.93670	NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
chr2.236936150.+	chr2	236936150	236936151	+	0	NA	"intron (NM_001037131, intron 13 of 17)"	"intron (NM_001037131, intron 13 of 17)"	140502	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr10.59080752.+	chr10	59080752	59080753	+	0	NA	Intergenic	AluY|SINE|Alu	-16433	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr14.53476780.+	chr14	53476780	53476781	+	0	NA	Intergenic	AluSx|SINE|Alu	-58965	NM_006832	10979	Hs.509343	NM_001134999	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
chr16.3203694.+	chr16	3203694	3203695	+	0	NA	Intergenic	AluSg|SINE|Alu	18560	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr16.65697052.+	chr16	65697052	65697053	+	0	NA	Intergenic	AluY|SINE|Alu	-86849	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LOC283867	-	uncharacterized LOC283867	miscRNA
chr4.55034930.+	chr4	55034930	55034931	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60334	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr2.48010442.-	chr2	48010442	48010443	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-221	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr9.90885140.+	chr9	90885140	90885141	+	0	NA	Intergenic	AluJb|SINE|Alu	-118157	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr12.125552189.+	chr12	125552189	125552190	+	0	NA	"intron (NM_023928, intron 1 of 17)"	AluSq10|SINE|Alu	2264	NM_023928	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
chr14.90564821.+	chr14	90564821	90564822	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSc8|SINE|Alu	36713	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr1.25736534.+	chr1	25736534	25736535	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10829	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr19.11372930.-	chr19	11372930	11372931	-	0	NA	"intron (NM_020812, intron 1 of 47)"	CpG	-238	NM_020812	57572	Hs.591002	NM_020812	ENSG00000130158	DOCK6	AOS2|ZIR1	dedicator of cytokinesis 6	protein-coding
chr16.88504245.+	chr16	88504245	88504246	+	0	NA	"exon (NM_001127464, exon 2 of 2)"	"exon (NM_001127464, exon 2 of 2)"	10366	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr1.6572007.-	chr1	6572007	6572008	-	0	NA	"intron (NM_198681, intron 1 of 21)"	"intron (NM_198681, intron 1 of 21)"	-8114	NM_198681	57449	Hs.619982	NM_001042663	ENSG00000171680	PLEKHG5	DSMA4|GEF720|Syx|Tech	"pleckstrin homology domain containing, family G (with RhoGef domain) member 5"	protein-coding
chr2.87624388.-	chr2	87624388	87624389	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	130586	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr3.48117709.+	chr3	48117709	48117710	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13060	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr1.937289.-	chr1	937289	937290	-	0	NA	Intergenic	CpG-24	1737	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr10.18781312.-	chr10	18781312	18781313	-	0	NA	"intron (NM_001167945, intron 3 of 13)"	AluSz6|SINE|Alu	-91799	NM_201570	783	Hs.59093	NM_000724	ENSG00000165995	CACNB2	CACNLB2|CAVB2|MYSB	"calcium channel, voltage-dependent, beta 2 subunit"	protein-coding
chr9.138663318.+	chr9	138663318	138663319	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69287	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr16.31932515.-	chr16	31932515	31932516	-	0	NA	Intergenic	AluY|SINE|Alu	-47436	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr22.17044839.-	chr22	17044839	17044840	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-28861	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	"chaperonin containing TCP1, subunit 8 (theta)-like 2"	protein-coding
chr16.87799864.+	chr16	87799864	87799865	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-266	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr11.66997368.-	chr11	66997368	66997369	-	0	NA	"intron (NM_012308, intron 11 of 20)"	AluY|SINE|Alu	10138	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr9.86733862.+	chr9	86733862	86733863	+	0	NA	Intergenic	AluSx|SINE|Alu	138225	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr12.132313907.-	chr12	132313907	132313908	-	0	NA	"intron (NM_016155, intron 1 of 9)"	CpG	-966	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr17.74923482.+	chr17	74923482	74923483	+	0	NA	"intron (NM_001199172, intron 10 of 16)"	AluJb|SINE|Alu	54753	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr13.55001077.+	chr13	55001077	55001078	+	0	NA	Intergenic	AluSx1|SINE|Alu	-114894	NR_031628	100302187		NR_031628		MIR1297	MIRN1297|hsa-mir-1297	microRNA 1297	miscRNA
chr6.159416887.+	chr6	159416887	159416888	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4311	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr1.210321616.-	chr1	210321616	210321617	-	0	NA	"intron (NM_153262, intron 6 of 7)"	AluY|SINE|Alu	84579	NM_019605	56256	Hs.600545	NM_019605		SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
chr1.197418610.+	chr1	197418610	197418611	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181276	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr3.42630495.+	chr3	42630495	42630496	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1803	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr16.78282853.+	chr16	78282853	78282854	+	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	149526	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr6.1610261.+	chr6	1610261	1610262	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-420	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr13.31024053.-	chr13	31024053	31024054	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16028	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr22.24157607.+	chr22	24157607	24157608	+	0	NA	"intron (NM_003073, intron 5 of 8)"	AluY|SINE|Alu	23592	NM_198440	91319	Hs.593679	NM_001002862	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
chr10.76198242.+	chr10	76198242	76198243	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	261995	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr2.52338195.-	chr2	52338195	52338196	-	0	NA	Intergenic	AluY|SINE|Alu	1078521	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr7.1587876.+	chr7	1587876	1587877	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8190	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr6.34857487.-	chr6	34857487	34857488	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-449	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr17.62794007.+	chr17	62794007	62794008	+	0	NA	"intron (NR_024386, intron 6 of 10)"	"intron (NR_024386, intron 6 of 10)"	-15890	NR_026899	146880	Hs.117853	NR_026899	ENSG00000215769	LOC146880	-	Rho GTPase activating protein 27 pseudogene	pseudo
chr21.45684302.-	chr21	45684302	45684303	-	0	NA	Intergenic	AluY|SINE|Alu	2203	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr2.48776673.-	chr2	48776673	48776674	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	-19365	NM_006873	11037	Hs.736128	NM_001198595	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
chr16.58300822.+	chr16	58300822	58300823	+	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	16982	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr3.577736.-	chr3	577736	577737	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-216370	NM_001253388	10752	Hs.731409	NM_001253387	ENSG00000134121	CHL1	CALL|L1CAM2	cell adhesion molecule with homology to L1CAM (close homolog of L1)	protein-coding
chr17.18575710.+	chr17	18575710	18575711	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	784	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr5.25535462.-	chr5	25535462	25535463	-	0	NA	Intergenic	AluY|SINE|Alu	694770	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr7.44918828.+	chr7	44918828	44918829	+	0	NA	"3' UTR (NM_033224, exon 1 of 1)"	"3' UTR (NM_033224, exon 1 of 1)"	2571	NR_039801	100616393		NR_039801	ENSG00000264326	MIR4657	-	microRNA 4657	miscRNA
chr2.242840589.+	chr2	242840589	242840590	+	0	NA	Intergenic	AluSx1|SINE|Alu	28703	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr20.25500418.+	chr20	25500418	25500419	+	0	NA	"intron (NM_025176, intron 2 of 23)"	AluJb|SINE|Alu	65735	NM_025176	22981	Hs.631508	NM_025176	ENSG00000101004	NINL	NLP|dJ691N24.1	ninein-like	protein-coding
chr5.42921820.+	chr5	42921820	42921821	+	0	NA	Intergenic	AluY|SINE|Alu	97093	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	miscRNA
chr3.46709794.-	chr3	46709794	46709795	-	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	-9105	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr16.46785499.+	chr16	46785499	46785500	+	0	NA	Intergenic	L2b|LINE|L2	-3278	NM_182493	91807	Hs.130465	NM_182493		MYLK3	MLCK|MLCK2|caMLCK	myosin light chain kinase 3	protein-coding
chr2.16671127.-	chr2	16671127	16671128	-	0	NA	Intergenic	AluY|SINE|Alu	-176007	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	"family with sequence similarity 49, member A"	protein-coding
chr14.103988592.-	chr14	103988592	103988593	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-604	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr10.28821784.+	chr10	28821784	28821785	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	362	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr22.46929368.+	chr22	46929368	46929369	+	0	NA	"intron (NM_014246, intron 1 of 34)"	CpG	3699	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr11.16894115.-	chr11	16894115	16894116	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133967	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr9.24753942.+	chr9	24753942	24753943	+	0	NA	Intergenic	AluYa5|SINE|Alu	-208268	NM_001271706	100129669	Hs.573530	XM_003846250	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
chr3.15105547.-	chr3	15105547	15105548	-	0	NA	"intron (NM_022497, intron 1 of 3)"	"intron (NM_022497, intron 1 of 3)"	-1269	NM_022497	64432	Hs.715617	NM_022497	ENSG00000131368	MRPS25	MRP-S25|RPMS25	mitochondrial ribosomal protein S25	protein-coding
chr19.1470810.+	chr19	1470810	1470811	+	0	NA	"3' UTR (NM_005883, exon 15 of 15)"	"3' UTR (NM_005883, exon 15 of 15)"	8418	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
chr13.101317768.-	chr13	101317768	101317769	-	0	NA	"intron (NM_001079669, intron 2 of 17)"	MLT1N2|LTR|ERVL-MaLR	-9335	NM_001079669	84899	Hs.190983	NM_001079669	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
chr4.989194.-	chr4	989194	989195	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1970	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chrX.38555451.+	chrX	38555451	38555452	+	0	NA	Intergenic	AluSg4|SINE|Alu	-105234	NM_001098791	58526	Hs.522605	NM_001098790	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
chr4.188471160.-	chr4	188471160	188471161	-	0	NA	Intergenic	AluSg|SINE|Alu	44393	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr19.1252699.-	chr19	1252699	1252700	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4147	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr22.43045002.-	chr22	43045002	43045003	-	0	NA	"intron (NM_000398, intron 1 of 8)"	"intron (NM_000398, intron 1 of 8)"	-403	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chr20.39978523.-	chr20	39978523	39978524	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8963	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr3.4664384.+	chr3	4664384	4664385	+	0	NA	"intron (NM_002222, intron 4 of 57)"	AluSc|SINE|Alu	128890	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	miscRNA
chr3.47865622.-	chr3	47865622	47865623	-	0	NA	"intron (NM_014966, intron 5 of 22)"	AluSx|SINE|Alu	-21223	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|RETCOR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding
chr14.105242441.+	chr14	105242441	105242442	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17497	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr7.56132648.-	chr7	56132648	56132649	-	0	NA	TTS (NM_001762)	TTS (NM_001762)	-731	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr10.123828891.-	chr10	123828891	123828892	-	0	NA	"intron (NM_206861, intron 3 of 19)"	AluY|SINE|Alu	-80202	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr6.127845917.-	chr6	127845917	127845918	-	0	NA	Intergenic	AluY|SINE|Alu	5417	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr19.10587523.+	chr19	10587523	10587524	+	0	NA	Intergenic	AluSq2|SINE|Alu	23890	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr12.5736582.-	chr12	5736582	5736583	-	0	NA	"intron (NM_020373, intron 17 of 25)"	"intron (NM_020373, intron 17 of 25)"	-133284	NM_002527	4908	Hs.99171	NM_001102654	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT3	neurotrophin 3	protein-coding
chrX.112142815.-	chrX	112142815	112142816	-	0	NA	Intergenic	AluY|SINE|Alu	58772	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr11.118672108.+	chr11	118672108	118672109	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10136	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr6.33500236.-	chr6	33500236	33500237	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47834	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr3.185305603.+	chr3	185305603	185305604	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1572	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr17.35829202.+	chr17	35829202	35829203	+	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	-20749	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chr1.212973165.+	chr1	212973165	212973166	+	0	NA	"intron (NM_001146170, intron 4 of 8)"	AluSz6|SINE|Alu	7995	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
chr8.142039766.-	chr8	142039766	142039767	-	0	NA	Intergenic	Intergenic	28354	NM_001199649	5747	Hs.395482	NM_001199649	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
chr19.54076864.-	chr19	54076864	54076865	-	0	NA	"intron (NM_001253798, intron 6 of 6)"	AluJb|SINE|Alu	-18303	NM_001079907	55422	Hs.185674	NM_001079906	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
chr17.53449354.-	chr17	53449354	53449355	-	0	NA	Intergenic	AluY|SINE|Alu	-49987	NM_012329	23531	Hs.656753	NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
chr2.159313369.-	chr2	159313369	159313370	-	0	NA	promoter-TSS (NM_003628)	promoter-TSS (NM_003628)	104	NM_001171637	130940	Hs.668597	NM_001171637	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
chr13.77954554.-	chr13	77954554	77954555	-	0	NA	Intergenic	AluSc|SINE|Alu	53377	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr8.7414154.+	chr8	7414154	7414155	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2472	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr14.105736167.-	chr14	105736167	105736168	-	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	20426	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr14.83280614.-	chr14	83280614	83280615	-	0	NA	Intergenic	SVA_D|Other|Other	1280409	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr11.7603352.-	chr11	7603352	7603353	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15065	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr19.51033663.-	chr19	51033663	51033664	-	0	NA	"intron (NM_001080457, intron 2 of 2)"	L2c|LINE|L2	15716	NM_001024656	554235	Hs.436338	NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
chr9.88491228.+	chr9	88491228	88491229	+	0	NA	Intergenic	AluYc|SINE|Alu	-64829	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr17.17806686.+	chr17	17806686	17806687	+	0	NA	"intron (NM_001033551, intron 2 of 13)"	AluYc|SINE|Alu	-66361	NM_004176	6720	Hs.592123	NM_001005291	ENSG00000072310	SREBF1	SREBP-1c|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
chr7.129803686.-	chr7	129803686	129803687	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41652	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr17.79611133.-	chr17	79611133	79611134	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1784	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr15.41708262.-	chr15	41708262	41708263	-	0	NA	Intergenic	AluSq2|SINE|Alu	1040	NM_015138	23168	Hs.511096	NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	"Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)"	protein-coding
chr16.1838762.+	chr16	1838762	1838763	+	0	NA	"3' UTR (NM_012225, exon 7 of 7)"	"3' UTR (NM_012225, exon 7 of 7)"	4972	NM_004970	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr12.132116774.-	chr12	132116774	132116775	-	0	NA	Intergenic	L1ME1|LINE|L1	78858	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr5.89746513.-	chr5	89746513	89746514	-	0	NA	Intergenic	AluSz|SINE|Alu	-24072	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr4.7690955.-	chr4	7690955	7690956	-	0	NA	"intron (NM_020777, intron 10 of 26)"	"intron (NM_020777, intron 10 of 26)"	64862	NR_026892	84740	Hs.663029	NM_032654		AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	miscRNA
chr5.176292915.-	chr5	176292915	176292916	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33418	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr6.170480306.+	chr6	170480306	170480307	+	0	NA	Intergenic	Intergenic	91351	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr6.450165.-	chr6	450165	450166	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-58426	NM_002460	3662	Hs.401013	NM_001195286	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
chrX.142322497.-	chrX	142322497	142322498	-	0	NA	Intergenic	AluY|SINE|Alu	-208793	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	"SPANX family, member N4"	protein-coding
chr1.55266812.+	chr1	55266812	55266813	+	0	NA	"exon (NM_017904, exon 1 of 6)"	"exon (NM_017904, exon 1 of 6)"	129	NM_001114108	55001	Hs.16230	NM_001114108	ENSG00000006555	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
chr19.2307940.-	chr19	2307940	2307941	-	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	-216	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr21.11130082.-	chr21	11130082	11130083	-	0	NA	Intergenic	AluSz6|SINE|Alu	31145	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr4.1358107.-	chr4	1358107	1358108	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17003	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr16.33393325.-	chr16	33393325	33393326	-	0	NA	Intergenic	AluSx1|SINE|Alu	94623	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr18.70912345.+	chr18	70912345	70912346	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19388	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr21.35774231.+	chr21	35774231	35774232	+	0	NA	Intergenic	AluSc8|SINE|Alu	26482	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr3.42630508.+	chr3	42630508	42630509	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1790	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr16.84212670.+	chr16	84212670	84212671	+	0	NA	"exon (NM_005679, exon 14 of 14)"	"exon (NM_005679, exon 14 of 14)"	8006	NM_139353	9013	Hs.153022	NM_001243156	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa"	protein-coding
chr4.4041387.-	chr4	4041387	4041388	-	0	NA	Intergenic	AluYb9|SINE|Alu	84239	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr7.1570448.-	chr7	1570448	1570449	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-80	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr17.29255154.-	chr17	29255154	29255155	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6400	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr3.36421958.-	chr3	36421958	36421959	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	139	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr8.95654272.+	chr8	95654272	95654273	+	0	NA	"exon (NM_017697, exon 2 of 16)"	"exon (NM_017697, exon 2 of 16)"	908	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr7.100436444.+	chr7	100436444	100436445	+	0	NA	Intergenic	LTR2|LTR|ERV1	-11301	NM_004444	2050	Hs.437008	NM_004444	ENSG00000196411	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
chr1.9832327.-	chr1	9832327	9832328	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52223	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr17.57868950.+	chr17	57868950	57868951	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49677	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr9.139071853.-	chr9	139071853	139071854	-	0	NA	Intergenic	Intergenic	-23151	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr7.70011636.+	chr7	70011636	70011637	+	0	NA	"intron (NM_015570, intron 5 of 18)"	AluY|SINE|Alu	-585887	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr20.13660624.+	chr20	13660624	13660625	+	0	NA	Intergenic	AluY|SINE|Alu	-41041	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr19.663249.-	chr19	663249	663250	-	0	NA	promoter-TSS (NM_194460)	promoter-TSS (NM_194460)	16	NM_194460	55658	Hs.69554	NM_194460	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
chr3.12337175.+	chr3	12337175	12337176	+	0	NA	"intron (NM_138711, intron 1 of 7)"	AluSq2|SINE|Alu	6739	NM_138711	5468	Hs.162646	NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma	peroxisome proliferator-activated receptor gamma	protein-coding
chr16.21610779.+	chr16	21610779	21610780	+	0	NA	promoter-TSS (NM_016025)	promoter-TSS (NM_016025)	-77	NM_001077180	51108	Hs.279583	NM_001077180	ENSG00000197006	METTL9	DREV|DREV1|PAP1	methyltransferase like 9	protein-coding
chr6.35454136.+	chr6	35454136	35454137	+	0	NA	"intron (NM_003214, intron 2 of 12)"	CpG	10725	NM_003214	7005	Hs.485205	NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain family member 3	protein-coding
chr11.638963.+	chr11	638963	638964	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1658	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr15.93174910.-	chr15	93174910	93174911	-	0	NA	"intron (NM_207446, intron 1 of 2)"	AluY|SINE|Alu	-24121	NM_207446	400451	Hs.702316	NM_207446	ENSG00000185442	FAM174B	-	"family with sequence similarity 174, member B"	protein-coding
chr2.85638933.-	chr2	85638933	85638934	-	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	1113	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr2.39267411.+	chr2	39267411	39267412	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79926	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr3.133504038.+	chr3	133504038	133504039	+	0	NA	"intron (NM_021203, intron 1 of 7)"	SVA_F|Other|Other	1161	NM_021203	58477	Hs.12152	NM_021203		SRPRB	APMCF1	"signal recognition particle receptor, B subunit"	protein-coding
chr20.25062352.-	chr20	25062352	25062353	-	0	NA	"exon (NM_001256272, exon 1 of 5)"	"exon (NM_001256272, exon 1 of 5)"	-663	NM_001256272	30813	Hs.274264	NM_001256271	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPD|RINX	visual system homeobox 1	protein-coding
chr8.125234394.+	chr8	125234394	125234395	+	0	NA	Intergenic	AluSx3|SINE|Alu	150546	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr18.2377806.+	chr18	2377806	2377807	+	0	NA	Intergenic	AluSg7|SINE|Alu	193683	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr4.8913700.+	chr4	8913700	8913701	+	0	NA	Intergenic	Intergenic	-37777	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr1.160239894.-	chr1	160239894	160239895	-	0	NA	Intergenic	AluJo|SINE|Alu	7544	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr3.29051426.+	chr3	29051426	29051427	+	0	NA	Intergenic	AluSc8|SINE|Alu	-271377	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr15.31382498.+	chr15	31382498	31382499	+	0	NA	"intron (NM_001252024, intron 1 of 27)"	"intron (NM_001252024, intron 1 of 27)"	11431	NM_001252030	4308	Hs.732541	NM_001252020	ENSG00000134160	TRPM1	CSNB1C|LTRPC1|MLSN1	"transient receptor potential cation channel, subfamily M, member 1"	protein-coding
chrX.88129137.-	chrX	88129137	88129138	-	0	NA	Intergenic	AluY|SINE|Alu	-126911	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr5.18111536.+	chr5	18111536	18111537	+	0	NA	Intergenic	AluY|SINE|Alu	-724117	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr18.7062485.+	chr18	7062485	7062486	+	0	NA	"intron (NM_005559, intron 3 of 62)"	"intron (NM_005559, intron 3 of 62)"	55328	NM_005559	284217	Hs.270364	NM_005559	ENSG00000101680	LAMA1	LAMA|S-LAM-alpha	"laminin, alpha 1"	protein-coding
chrM.10679.-	chrM	10679	10680	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.122372867.+	chr3	122372867	122372868	+	0	NA	Intergenic	AluY|SINE|Alu	-26805	NM_017554	54625	Hs.518203	NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	"poly (ADP-ribose) polymerase family, member 14"	protein-coding
chr12.107112623.+	chr12	107112623	107112624	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34145	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr17.7246090.-	chr17	7246090	7246091	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6242	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr2.68031685.+	chr2	68031685	68031686	+	0	NA	Intergenic	AluY|SINE|Alu	258474	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr4.989229.-	chr4	989229	989230	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	2005	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr16.4372998.+	chr16	4372998	4372999	+	0	NA	Intergenic	Intergenic	-9227	NM_032575	84662	Hs.592087	NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
chr1.114299524.+	chr1	114299524	114299525	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2253	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr7.5973312.-	chr7	5973312	5973313	-	0	NA	"intron (NM_001099697, intron 18 of 20).2"	AluY|SINE|Alu	-34971	NM_015622	51622	Hs.530000	NM_015622	ENSG00000122674	CCZ1	C7orf28A|CCZ1A|H_DJ1163J12.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	protein-coding
chr14.106165461.+	chr14	106165461	106165462	+	0	NA	Intergenic	Intergenic	-26317	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	"ELK2A, member of ETS oncogene family, pseudogene"	pseudo
chr22.31792836.-	chr22	31792836	31792837	-	0	NA	Intergenic	AluJr4|SINE|Alu	2703	NM_004147	4733	Hs.115242	NM_004147	ENSG00000185721	DRG1	NEDD3	developmentally regulated GTP binding protein 1	protein-coding
chr16.3019570.-	chr16	3019570	3019571	-	0	NA	"5' UTR (NM_152341, exon 1 of 3)"	"5' UTR (NM_152341, exon 1 of 3)"	-228	NM_152341	124222	Hs.351474	NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member IV	protein-coding
chr8.11739665.-	chr8	11739665	11739666	-	0	NA	Intergenic	AluSx1|SINE|Alu	14019	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr10.20638023.-	chr10	20638023	20638024	-	0	NA	Intergenic	Intergenic	202876	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr5.128197002.+	chr5	128197002	128197003	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104208	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr11.70246533.+	chr11	70246533	70246534	+	0	NA	"intron (NM_138565, intron 1 of 16)"	AluJr|SINE|Alu	1921	NM_138565	2017	Hs.596164	NM_001184740	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
chr11.68552317.-	chr11	68552317	68552318	-	0	NA	"exon (NM_001876, exon 10 of 19)"	"exon (NM_001876, exon 10 of 19)"	33329	NM_004923	9633	Hs.145932	NM_001039656	ENSG00000132749	MTL5	CXCDC2|MTLT|TESMIN	"metallothionein-like 5, testis-specific (tesmin)"	protein-coding
chr5.139493072.+	chr5	139493072	139493073	+	0	NA	promoter-TSS (NM_005859)	promoter-TSS (NM_005859)	-636	NM_005859	5813	Hs.733524	NM_005859		PURA	PUR-ALPHA|PUR1|PURALPHA	purine-rich element binding protein A	protein-coding
chr19.267147.-	chr19	267147	267148	-	0	NA	Intergenic	CpG	-24022	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr16.68233551.-	chr16	68233551	68233552	-	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	-36585	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr6.108489855.+	chr6	108489855	108489856	+	0	NA	"intron (NM_003269, intron 1 of 8)"	CpG-22435	2640	NM_003269	7101	Hs.157688	NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	"nuclear receptor subfamily 2, group E, member 1"	protein-coding
chr4.65343978.+	chr4	65343978	65343979	+	0	NA	Intergenic	AluY|SINE|Alu	-68800	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr5.68358791.-	chr5	68358791	68358792	-	0	NA	Intergenic	SVA_D|Other|Other	30985	NM_001251969	64924	Hs.631975	NM_001251969	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	"solute carrier family 30 (zinc transporter), member 5"	protein-coding
chr12.131419258.+	chr12	131419258	131419259	+	0	NA	Intergenic	AluSz|SINE|Alu	-19194	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr2.240371779.+	chr2	240371779	240371780	+	0	NA	Intergenic	SVA_D|Other|Other	-49136	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr16.22675552.-	chr16	22675552	22675553	-	0	NA	Intergenic	AluJr|SINE|Alu	54051	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr16.49892635.+	chr16	49892635	49892636	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-805	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr7.158790512.+	chr7	158790512	158790513	+	0	NA	Intergenic	Intergenic	-10533	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chrX.133565020.+	chrX	133565020	133565021	+	0	NA	Intergenic	AluSp|SINE|Alu	-29155	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr2.159693837.+	chr2	159693837	159693838	+	0	NA	Intergenic	AluSp|SINE|Alu	42008	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr3.31533157.+	chr3	31533157	31533158	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41334	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr22.43045019.-	chr22	43045019	43045020	-	0	NA	"intron (NM_000398, intron 1 of 8)"	CpG	-386	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chr2.43898395.-	chr2	43898395	43898396	-	0	NA	"intron (NM_172069, intron 2 of 29)"	AluSq10|SINE|Alu	-5066	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
chr9.20614266.+	chr9	20614266	20614267	+	0	NA	"intron (NM_004529, intron 2 of 10)"	AluSq2|SINE|Alu	8248	NM_004529	4300	Hs.591085	NM_004529		MLLT3	AF9|YEATS3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3"	protein-coding
chr11.34937489.-	chr11	34937489	34937490	-	0	NA	promoter-TSS (NM_001135024)	promoter-TSS (NM_001135024)	188	NM_001135024	8050	Hs.502315	NM_001135024	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDX1|proX	"pyruvate dehydrogenase complex, component X"	protein-coding
chr10.95605023.+	chr10	95605023	95605024	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-48707	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr6.160985724.-	chr6	160985724	160985725	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53568	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr19.17585839.-	chr19	17585839	17585840	-	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	-4539	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr7.532153.+	chr7	532153	532154	+	0	NA	Intergenic	Intergenic	27328	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr16.12223887.-	chr16	12223887	12223888	-	0	NA	"intron (NM_032167, intron 13 of 20)"	AluSc8|SINE|Alu	-153285	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr19.18416225.-	chr19	18416225	18416226	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17776	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr19.3766732.-	chr19	3766732	3766733	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4067	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr2.106682214.+	chr2	106682214	106682215	+	0	NA	"5' UTR (NM_032411, exon 1 of 4)"	"5' UTR (NM_032411, exon 1 of 4)"	101	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr2.20646487.+	chr2	20646487	20646488	+	0	NA	promoter-TSS (NM_004040)	promoter-TSS (NM_004040)	-348	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
chr22.51001324.+	chr22	51001324	51001325	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	4	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr13.77954583.+	chr13	77954583	77954584	+	0	NA	Intergenic	AluSc|SINE|Alu	-53406	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr2.156430244.+	chr2	156430244	156430245	+	0	NA	Intergenic	AluYk4|SINE|Alu	759043	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr16.50142549.-	chr16	50142549	50142550	-	0	NA	Intergenic	AluSz6|SINE|Alu	-42668	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr9.135947007.+	chr9	135947007	135947008	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9642	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr6.151771589.-	chr6	151771589	151771590	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1727	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chrX.153657106.-	chrX	153657106	153657107	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-128	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr3.173023507.-	chr3	173023507	173023508	-	0	NA	Intergenic	AluYc|SINE|Alu	92737	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr17.65242256.+	chr17	65242256	65242257	+	0	NA	promoter-TSS (NM_014877)	promoter-TSS (NM_014877)	-937	NM_014877	9931	Hs.596366	NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
chr18.69175943.+	chr18	69175943	69175944	+	0	NA	Intergenic	AluY|SINE|Alu	70249	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr1.228538614.-	chr1	228538614	228538615	-	0	NA	"exon (NM_001098623, exon 77 of 105)"	"exon (NM_001098623, exon 77 of 105)"	-55903	NM_145214	81559	Hs.13543	NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
chr7.154447367.+	chr7	154447367	154447368	+	0	NA	"intron (NM_130797, intron 6 of 25)"	"intron (NM_130797, intron 6 of 25)"	-272860	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	LOC100132707	-	uncharacterized LOC100132707	miscRNA
chr22.38166120.+	chr22	38166120	38166121	+	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	23879	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr1.12291303.+	chr1	12291303	12291304	+	0	NA	"intron (NM_018156, intron 1 of 68)"	"intron (NM_018156, intron 1 of 68)"	1190	NM_018156	55187	Hs.439381	NM_015378	ENSG00000048707	VPS13D	-	vacuolar protein sorting 13 homolog D (S. cerevisiae)	protein-coding
chr18.11086407.-	chr18	11086407	11086408	-	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	-62354	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr9.107727130.-	chr9	107727130	107727131	-	0	NA	Intergenic	AluYa5|SINE|Alu	36603	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr12.95549193.+	chr12	95549193	95549194	+	0	NA	"intron (NM_018351, intron 3 of 20)"	AluSx|SINE|Alu	62047	NM_018351	55785	Hs.506381	NM_018351	ENSG00000180263	FGD6	ZFYVE24	"FYVE, RhoGEF and PH domain containing 6"	protein-coding
chr1.235475175.+	chr1	235475175	235475176	+	0	NA	"intron (NM_001206794, intron 2 of 23)"	"intron (NM_001206794, intron 2 of 23)"	15627	NM_001206794	51742	Hs.575782	NM_001206794	ENSG00000054267	ARID4B	BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding
chr2.105472106.-	chr2	105472106	105472107	-	0	NA	"exon (NM_006236, exon 1 of 1)"	"exon (NM_006236, exon 1 of 1)"	-137	NM_006236	5455	Hs.673855	NM_006236		POU3F3	BRN1|OTF8	POU class 3 homeobox 3	protein-coding
chr1.151573459.-	chr1	151573459	151573460	-	0	NA	Intergenic	SVA_E|Other|Other	11203	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr2.224724699.-	chr2	224724699	224724700	-	0	NA	Intergenic	AluSp|SINE|Alu	22380	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr3.31574022.-	chr3	31574022	31574023	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	469	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr1.226350803.+	chr1	226350803	226350804	+	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	23620	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr7.5355889.-	chr7	5355889	5355890	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33328	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr12.9892341.+	chr12	9892341	9892342	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6446	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr3.125174730.-	chr3	125174730	125174731	-	0	NA	"intron (NR_073435, intron 10 of 12)"	AluY|SINE|Alu	-64328	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr3.1144607.+	chr3	1144607	1144608	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9978	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr12.53373517.-	chr12	53373517	53373518	-	0	NA	Intergenic	AluSx1|SINE|Alu	26545	NM_001417	1975	Hs.702041	NM_018507	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
chr13.114878020.+	chr13	114878020	114878021	+	0	NA	"intron (NM_007368, intron 1 of 23)"	MER5A|DNA|hAT-Charlie	20075	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr14.102000725.+	chr14	102000725	102000726	+	0	NA	Intergenic	Intergenic	21288	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr11.8615557.-	chr11	8615557	8615558	-	0	NA	promoter-TSS (NM_030906)	promoter-TSS (NM_030906)	54	NM_030906	65975	Hs.501833	NM_030906	ENSG00000130413	STK33	-	serine/threonine kinase 33	protein-coding
chr10.123791037.+	chr10	123791037	123791038	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42348	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr1.26778170.-	chr1	26778170	26778171	-	0	NA	"intron (NM_205861, intron 6 of 8)"	AluY|SINE|Alu	-19397	NM_205861	79947	Hs.369385	NM_001243564	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase	protein-coding
chr6.8388433.-	chr6	8388433	8388434	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47361	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr2.80427754.-	chr2	80427754	80427755	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluSx1|SINE|Alu	-103733	NM_178839	347730	Hs.591580	NM_178839	ENSG00000162951	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
chr9.6608148.+	chr9	6608148	6608149	+	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	37544	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr5.1144372.+	chr5	1144372	1144373	+	0	NA	Intergenic	Intergenic	-32200	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr2.125181287.-	chr2	125181287	125181288	-	0	NA	"intron (NM_130773, intron 4 of 23)"	AluY|SINE|Alu	-398423	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr19.1871374.+	chr19	1871374	1871375	+	0	NA	Intergenic	Intergenic	-7810	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr13.100934726.-	chr13	100934726	100934727	-	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	-193457	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr2.240187905.-	chr2	240187905	240187906	-	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	39252	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr10.104238471.+	chr10	104238471	104238472	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17301	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chrX.29584337.+	chrX	29584337	29584338	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-649338	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr4.989201.+	chr4	989201	989202	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-1977	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr22.24237313.+	chr22	24237313	24237314	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	748	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr5.176075376.-	chr5	176075376	176075377	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-988	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr17.8975535.+	chr17	8975535	8975536	+	0	NA	"intron (NM_004822, intron 2 of 6)"	"intron (NM_004822, intron 2 of 6)"	50676	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr12.116724222.+	chr12	116724222	116724223	+	0	NA	Intergenic	AluY|SINE|Alu	-9231	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr11.64641629.-	chr11	64641629	64641630	-	0	NA	"intron (NM_006795, intron 2 of 4)"	AluSg|SINE|Alu	-4562	NM_006795	10938	Hs.523774	NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH-domain containing 1	protein-coding
chr6.106553563.-	chr6	106553563	106553564	-	0	NA	"exon (NM_001198, exon 5 of 7)"	"exon (NM_001198, exon 5 of 7)"	-6826	NM_182907	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	"PR domain containing 1, with ZNF domain"	protein-coding
chrM.16390.+	chrM	16390	16391	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr5.89746519.+	chr5	89746519	89746520	+	0	NA	Intergenic	AluSz|SINE|Alu	24066	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr3.32863317.+	chr3	32863317	32863318	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3807	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr9.138397711.+	chr9	138397711	138397712	+	0	NA	Intergenic	Intergenic	5234	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr10.8534172.+	chr10	8534172	8534173	+	0	NA	Intergenic	AluY|SINE|Alu	437505	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr12.8057440.-	chr12	8057440	8057441	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31452	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr19.47628036.+	chr19	47628036	47628037	+	0	NA	Intergenic	AluY|SINE|Alu	-6044	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr17.40576537.-	chr17	40576537	40576538	-	0	NA	Intergenic	AluSx|SINE|Alu	1199	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
chr3.196112282.+	chr3	196112282	196112283	+	0	NA	"intron (NM_015562, intron 5 of 10)"	SVA_B|Other|Other	-46991	NM_001204898	116211	Hs.733264	NM_001204897	ENSG00000145107	TM4SF19	-	transmembrane 4 L six family member 19	protein-coding
chr12.112407469.+	chr12	112407469	112407470	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43554	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr1.161508253.+	chr1	161508253	161508254	+	0	NA	Intergenic	AluYf4|SINE|Alu	11565	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr6.33500237.-	chr6	33500237	33500238	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47833	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr19.46786016.+	chr19	46786016	46786017	+	0	NA	"intron (NR_046936, intron 3 of 3)"	AluSx1|SINE|Alu	-14287	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	"hypoxia inducible factor 3, alpha subunit"	protein-coding
chr22.20104728.-	chr22	20104728	20104729	-	0	NA	promoter-TSS (NM_022727)	promoter-TSS (NM_022727)	-90	NM_022727	27037	Hs.713579	NM_001257994	ENSG00000099899	TRMT2A	HTF9C	tRNA methyltransferase 2 homolog A (S. cerevisiae)	protein-coding
chr6.33500277.+	chr6	33500277	33500278	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47793	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr11.2213975.+	chr11	2213975	2213976	+	0	NA	Intergenic	Intergenic	19682	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr9.8858145.-	chr9	8858145	8858146	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124199	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr3.115133761.+	chr3	115133761	115133762	+	0	NA	Intergenic	AluSp|SINE|Alu	-208390	NM_002045	2596	Hs.134974	NM_001130064	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
chr6.57322577.-	chr6	57322577	57322578	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140155	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr2.221058141.-	chr2	221058141	221058142	-	0	NA	Intergenic	MER52A|LTR|ERV1	286855	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr11.83150109.+	chr11	83150109	83150110	+	0	NA	Intergenic	AluSx|SINE|Alu	-152732	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr4.189134360.+	chr4	189134360	189134361	+	0	NA	Intergenic	AluSc8|SINE|Alu	73762	NM_178556	339976	Hs.348618	NM_178556	ENSG00000184108	TRIML1	RNF209	tripartite motif family-like 1	protein-coding
chr14.105736135.+	chr14	105736135	105736136	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20394	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr11.118672124.+	chr11	118672124	118672125	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10152	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr3.68753612.-	chr3	68753612	68753613	-	0	NA	Intergenic	AluSx3|SINE|Alu	-228149	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr2.202046019.+	chr2	202046019	202046020	+	0	NA	Intergenic	AluSz|SINE|Alu	-1602	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr16.81282912.-	chr16	81282912	81282913	-	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	-10616	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr10.134639723.-	chr10	134639723	134639724	-	0	NA	"intron (NM_001200049, intron 50 of 57)"	"intron (NM_001200049, intron 50 of 57)"	40186	NM_177400	84504	Hs.134013	NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
chr2.55647052.+	chr2	55647052	55647053	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	5	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr6.80035340.+	chr6	80035340	80035341	+	0	NA	Intergenic	L1PA4|LINE|L1	-90885	NM_004242	9324	Hs.77558	NM_001201362	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chr1.236227512.+	chr1	236227512	236227513	+	0	NA	"intron (NM_002508, intron 1 of 19)"	"intron (NM_002508, intron 1 of 19)"	969	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr20.46019379.+	chr20	46019379	46019380	+	0	NA	Intergenic	AluYb8|SINE|Alu	-33905	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr7.158268141.-	chr7	158268141	158268142	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57364	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr12.118663784.+	chr12	118663784	118663785	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89914	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr6.2945806.+	chr6	2945806	2945807	+	0	NA	Intergenic	AluSz6|SINE|Alu	16598	NM_001271825	5269	Hs.731506	NM_001195291	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	"serpin peptidase inhibitor, clade B (ovalbumin), member 6"	protein-coding
chr17.76206825.+	chr17	76206825	76206826	+	0	NA	Intergenic	AluY|SINE|Alu	-3452	NM_001012271	332	Hs.514527	NM_001012270	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
chr22.20137613.-	chr22	20137613	20137614	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	182	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chrX.103014786.+	chrX	103014786	103014787	+	0	NA	Intergenic	AluY|SINE|Alu	-16653	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr5.178657996.+	chr5	178657996	178657997	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114435	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr14.44126249.+	chr14	44126249	44126250	+	0	NA	Intergenic	AluSc|SINE|Alu	850250	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr16.9185053.+	chr16	9185053	9185054	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-484	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr12.54402956.+	chr12	54402956	54402957	+	0	NA	promoter-TSS (NM_022658)	promoter-TSS (NM_022658)	66	NM_022658	3224	Hs.664500	NM_022658		HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
chr10.89762159.+	chr10	89762159	89762160	+	0	NA	Intergenic	AluSq2|SINE|Alu	138964	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
chr5.87348557.-	chr5	87348557	87348558	-	0	NA	Intergenic	L1PA2|LINE|L1	-216108	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr11.85821779.+	chr11	85821779	85821780	+	0	NA	Intergenic	SVA_D|Other|Other	-40856	NM_001206947	8301	Hs.163893	NM_001008660	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
chr2.27588227.-	chr2	27588227	27588228	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluSp|SINE|Alu	-4692	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr19.49060896.-	chr19	49060896	49060897	-	0	NA	"intron (NM_177973, intron 1 of 6)"	AluSp|SINE|Alu	-5467	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr22.21635808.-	chr22	21635808	21635809	-	0	NA	promoter-TSS (NR_024583)	promoter-TSS (NR_024583)	906	NR_024583	29797	Hs.735161	NR_024583		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin-like 8 pseudogene	pseudo
chr3.122466674.+	chr3	122466674	122466675	+	0	NA	"intron (NM_024610, intron 6 of 7)"	SVA_D|Other|Other	45992	NM_024610	79663	Hs.29169	NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB (heat shock 27kDa) associated protein 1	protein-coding
chr9.100092077.+	chr9	100092077	100092078	+	0	NA	"intron (NR_036529, intron 27 of 44)"	AluY|SINE|Alu	22167	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
chr16.86016104.-	chr16	86016104	86016105	-	0	NA	Intergenic	Intergenic	-83330	NM_002163	3394	Hs.137427	NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IRF-8	interferon regulatory factor 8	protein-coding
chr16.33294007.-	chr16	33294007	33294008	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4695	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr19.47364602.+	chr19	47364602	47364603	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10399	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr5.27408037.+	chr5	27408037	27408038	+	0	NA	Intergenic	AluY|SINE|Alu	-64362	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr2.10578250.+	chr2	10578250	10578251	+	0	NA	Intergenic	AluSz|SINE|Alu	8725	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	"small nucleolar RNA, H/ACA box 80B"	snoRNA
chr1.97799066.-	chr1	97799066	97799067	-	0	NA	"intron (NM_000110, intron 16 of 22)"	"intron (NM_000110, intron 16 of 22)"	-237587	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr12.85283173.+	chr12	85283173	85283174	+	0	NA	"intron (NM_001146335, intron 1 of 10)"	AluY|SINE|Alu	23435	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr5.3764365.+	chr5	3764365	3764366	+	0	NA	Intergenic	Intergenic	168197	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr12.112407427.-	chr12	112407427	112407428	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43596	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr9.12352814.+	chr9	12352814	12352815	+	0	NA	Intergenic	AluY|SINE|Alu	-340572	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr15.90928603.-	chr15	90928603	90928604	-	0	NA	Intergenic	AluY|SINE|Alu	2870	NM_003870	8826	Hs.430551	NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
chr20.45162706.-	chr20	45162706	45162707	-	0	NA	Intergenic	MER52C|LTR|ERV1	-16507	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
chr9.35846398.-	chr9	35846398	35846399	-	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	13873	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr2.198058512.+	chr2	198058512	198058513	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117009	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr9.36596668.-	chr9	36596668	36596669	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23809	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr16.2839395.+	chr16	2839395	2839396	+	0	NA	Intergenic	AluSc|SINE|Alu	-2687	NM_152891	260429	Hs.280658	NM_152891	ENSG00000103355	PRSS33	EOS	"protease, serine, 33"	protein-coding
chr10.23481132.+	chr10	23481132	23481133	+	0	NA	promoter-TSS (NM_178161)	promoter-TSS (NM_178161)	-328	NM_178161	256297	Hs.351503	NM_178161	ENSG00000168267	PTF1A	PTF1-p48|bHLHa29	"pancreas specific transcription factor, 1a"	protein-coding
chr17.78968916.+	chr17	78968916	78968917	+	0	NA	"intron (NM_024591, intron 3 of 7)"	"intron (NM_024591, intron 3 of 7)"	3275	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr9.28773089.+	chr9	28773089	28773090	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53786	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chrX.86721049.+	chrX	86721049	86721050	+	0	NA	Intergenic	SVA_C|Other|Other	-51666	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr17.40536627.+	chr17	40536627	40536628	+	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	3778	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr8.675052.-	chr8	675052	675053	-	0	NA	"intron (NM_207332, intron 1 of 5)"	"intron (NM_207332, intron 1 of 5)"	-6174	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr3.126195052.-	chr3	126195052	126195053	-	0	NA	promoter-TSS (NM_025112)	promoter-TSS (NM_025112)	290	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr5.170687202.-	chr5	170687202	170687203	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49086	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr14.50838475.-	chr14	50838475	50838476	-	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	-24142	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr6.111465699.-	chr6	111465699	111465700	-	0	NA	"intron (NM_018593, intron 1 of 5)"	AluY|SINE|Alu	-56918	NM_018593	117247	Hs.591327	NM_018593	ENSG00000112394	SLC16A10	MCT10|PRO0813|TAT1	"solute carrier family 16, member 10 (aromatic amino acid transporter)"	protein-coding
chr19.18057764.+	chr19	18057764	18057765	+	0	NA	Intergenic	AluSx|SINE|Alu	-4347	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr7.727460.-	chr7	727460	727461	-	0	NA	"intron (NM_002735, intron 2 of 10)"	AluSx1|SINE|Alu	-24701	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr14.102087932.-	chr14	102087932	102087933	-	0	NA	Intergenic	Intergenic	-60244	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr16.1506646.-	chr16	1506646	1506647	-	0	NA	"intron (NM_001114331, intron 8 of 23)"	AluSx1|SINE|Alu	12156	NM_001143980	645811	Hs.355232	NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
chr3.45348436.+	chr3	45348436	45348437	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80622	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr5.178157383.-	chr5	178157383	178157384	-	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	-320	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr10.12405367.+	chr10	12405367	12405368	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13784	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr2.1563007.-	chr2	1563007	1563008	-	0	NA	Intergenic	Intergenic	-144827	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr15.41613501.-	chr15	41613501	41613502	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11318	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr22.46326790.-	chr22	46326790	46326791	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46218	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr10.45240358.-	chr10	45240358	45240359	-	0	NA	Intergenic	AluSx1|SINE|Alu	166406	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr18.13095699.+	chr18	13095699	13095700	+	0	NA	"intron (NM_032142, intron 35 of 44)"	"intron (NM_032142, intron 35 of 44)"	104338	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr10.131449461.-	chr10	131449461	131449462	-	0	NA	"intron (NM_002412, intron 2 of 4)"	"intron (NM_002412, intron 2 of 4)"	-184007	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
chrX.48871384.-	chrX	48871384	48871385	-	0	NA	Intergenic	AluY|SINE|Alu	12709	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr1.90538291.-	chr1	90538291	90538292	-	0	NA	Intergenic	AluY|SINE|Alu	-77613	NM_182976	284695	Hs.306221	NM_181781	ENSG00000162664	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
chr9.137211907.+	chr9	137211907	137211908	+	0	NA	Intergenic	Intergenic	-6409	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr17.18755210.+	chr17	18755210	18755211	+	0	NA	Intergenic	AluSx|SINE|Alu	-4402	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr3.126207337.-	chr3	126207337	126207338	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12575	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr20.3148774.-	chr20	3148774	3148775	-	0	NA	"5' UTR (NM_014731, exon 1 of 3)"	"5' UTR (NM_014731, exon 1 of 3)"	-433	NM_014731	9762	Hs.90232	NM_014731	ENSG00000088899	LZTS3	PROSAPIP1|RP5-1187M17.10	"leucine zipper, putative tumor suppressor family member 3"	protein-coding
chr5.178157369.+	chr5	178157369	178157370	+	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	334	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr5.37382627.+	chr5	37382627	37382628	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3215	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr1.101786819.-	chr1	101786819	101786820	-	0	NA	Intergenic	AluY|SINE|Alu	-19632	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr1.240947662.+	chr1	240947662	240947663	+	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	-172200	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr11.1476579.+	chr11	1476579	1476580	+	0	NA	"intron (NM_003957, intron 16 of 19)"	"intron (NM_003957, intron 16 of 19)"	31369	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr10.134775838.-	chr10	134775838	134775839	-	0	NA	Intergenic	MER66B|LTR|ERV1	3200	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LOC399829	-	uncharacterized LOC399829	miscRNA
chr4.109524446.-	chr4	109524446	109524447	-	0	NA	"intron (NR_026968, intron 1 of 3)"	AluSx1|SINE|Alu	-17167	NR_026968	285456	Hs.683863	NM_182591	ENSG00000234492	RPL34-AS1	-	RPL34 antisense RNA 1 (head to head)	miscRNA
chr13.21644851.+	chr13	21644851	21644852	+	0	NA	Intergenic	AluSx|SINE|Alu	-9129	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr11.3224490.+	chr11	3224490	3224491	+	0	NA	Intergenic	Intergenic	-15072	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chrY.15683482.-	chrY	15683482	15683483	-	0	NA	Intergenic	AluYb8|SINE|Alu	90932	NR_047601	7404	Hs.115277	NM_001258249	ENSG00000183878	UTY	UTY1	"ubiquitously transcribed tetratricopeptide repeat containing, Y-linked"	protein-coding
chr1.99974254.+	chr1	99974254	99974255	+	0	NA	Intergenic	SVA_B|Other|Other	-137177	NM_017734	54873	Hs.483993	NM_017734	ENSG00000099260	PALMD	C1orf11|PALML	palmdelphin	protein-coding
chr19.7587585.+	chr19	7587585	7587586	+	0	NA	promoter-TSS (NM_020533)	promoter-TSS (NM_020533)	89	NM_020533	57192	Hs.631858	NM_020533	ENSG00000090674	MCOLN1	MG-2|ML4|MLIV|MST080|TRP-ML1|TRPM-L1|TRPML1	mucolipin 1	protein-coding
chr20.46752644.-	chr20	46752644	46752645	-	0	NA	Intergenic	Intergenic	236010	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr20.43342098.-	chr20	43342098	43342099	-	0	NA	Intergenic	AluSx|SINE|Alu	1787	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr20.4729611.-	chr20	4729611	4729612	-	0	NA	Intergenic	Intergenic	8297	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr12.26964561.+	chr12	26964561	26964562	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21570	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr3.38022205.-	chr3	38022205	38022206	-	0	NA	"intron (NM_001008392, intron 7 of 7)"	"intron (NM_001008392, intron 7 of 7)"	-11310	NR_029499	407015		NR_029499		MIR26A1	MIR26A|MIRN26A1	microRNA 26a-1	miscRNA
chr16.1154187.+	chr16	1154187	1154188	+	0	NA	Intergenic	Intergenic	-7943	NM_207419	390664	Hs.527853	NM_207419		C1QTNF8	CTRP8|UNQ5829	C1q and tumor necrosis factor related protein 8	protein-coding
chr17.74707119.-	chr17	74707119	74707120	-	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	63	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr1.53335578.-	chr1	53335578	53335579	-	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	-27395	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr10.118500973.+	chr10	118500973	118500974	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1112	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr12.129892190.+	chr12	129892190	129892191	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496022	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr13.112726515.-	chr13	112726515	112726516	-	0	NA	TTS (NM_005986)	TTS (NM_005986)	-4602	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr17.78822951.-	chr17	78822951	78822952	-	0	NA	"intron (NM_020761, intron 11 of 33)"	"intron (NM_020761, intron 11 of 33)"	142690	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr11.79515370.-	chr11	79515370	79515371	-	0	NA	Intergenic	SVA_B|Other|Other	363675	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
chr19.21789919.-	chr19	21789919	21789920	-	0	NA	Intergenic	SVA_D|Other|Other	-101482	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr5.180198330.+	chr5	180198330	180198331	+	0	NA	Intergenic	SVA_D|Other|Other	-31272	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr5.43079582.-	chr5	43079582	43079583	-	0	NA	Intergenic	AluSq2|SINE|Alu	12509	NR_034127	100132356	Hs.726831	NM_175919		LOC100132356	-	uncharacterized LOC100132356	miscRNA
chr8.11312278.-	chr8	11312278	11312279	-	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	-11998	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr4.1626806.-	chr4	1626806	1626807	-	0	NA	Intergenic	CpG	-58912	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr11.3224488.+	chr11	3224488	3224489	+	0	NA	Intergenic	Intergenic	-15074	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr6.134847827.-	chr6	134847827	134847828	-	0	NA	Intergenic	AluY|SINE|Alu	-88299	NR_038218	154092	Hs.223718	NR_038216		LOC154092	-	uncharacterized LOC154092	miscRNA
chr12.19304895.-	chr12	19304895	19304896	-	0	NA	"intron (NM_019012, intron 3 of 25)"	AluY|SINE|Alu	-22269	NM_001190860	54477	Hs.188614	NM_001143821	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	"pleckstrin homology domain containing, family A member 5"	protein-coding
chr6.163113544.-	chr6	163113544	163113545	-	0	NA	"intron (NM_004562, intron 1 of 11)"	MER77|LTR|ERVL	34620	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr12.8777864.-	chr12	8777864	8777865	-	0	NA	Intergenic	Intergenic	12422	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr1.25736507.+	chr1	25736507	25736508	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10856	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr1.178011468.+	chr1	178011468	178011469	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4326	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr1.12040474.+	chr1	12040474	12040475	+	0	NA	"5' UTR (NM_014874, exon 1 of 19)"	"5' UTR (NM_014874, exon 1 of 19)"	236	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr12.131127750.+	chr12	131127750	131127751	+	0	NA	Intergenic	Intergenic	-125340	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr5.179160137.-	chr5	179160137	179160138	-	0	NA	"exon (NM_014757, exon 1 of 5)"	"exon (NM_014757, exon 1 of 5)"	-286	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr7.532145.-	chr7	532145	532146	-	0	NA	Intergenic	Intergenic	-27336	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr8.1321573.+	chr8	1321573	1321574	+	0	NA	Intergenic	CpG	-70746	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chrX.112187606.-	chrX	112187606	112187607	-	0	NA	Intergenic	AluY|SINE|Alu	103563	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr10.116163702.+	chr10	116163702	116163703	+	0	NA	"intron (NM_001001936, intron 1 of 18)"	CpG	813	NM_001001936	84632	Hs.501106	NM_001001936	ENSG00000169129	AFAP1L2	KIAA1914|XB130	actin filament associated protein 1-like 2	protein-coding
chr17.35266233.+	chr17	35266233	35266234	+	0	NA	Intergenic	AluSx3|SINE|Alu	-28539	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr2.109561216.+	chr2	109561216	109561217	+	0	NA	"intron (NM_022336, intron 1 of 11)"	MIR|SINE|MIR	44612	NM_022336	10913	Hs.171971	NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
chr14.103988561.-	chr14	103988561	103988562	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-635	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr14.34924184.-	chr14	34924184	34924185	-	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	-7284	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr16.29422017.-	chr16	29422017	29422018	-	0	NA	Intergenic	AluY|SINE|Alu	38649	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr5.36855796.-	chr5	36855796	36855797	-	0	NA	Intergenic	AluSx|SINE|Alu	-21000	NR_046262	646719	Hs.355684	NR_046262		LOC646719	-	uncharacterized LOC646719	miscRNA
chr4.116909578.+	chr4	116909578	116909579	+	0	NA	Intergenic	AluY|SINE|Alu	-311303	NR_031737	100302290		NR_031737		MIR1973	hsa-mir-1973	microRNA 1973	miscRNA
chr5.1770149.-	chr5	1770149	1770150	-	0	NA	Intergenic	L1MB5|LINE|L1	-29807	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr17.29030325.-	chr17	29030325	29030326	-	0	NA	Intergenic	AluSx|SINE|Alu	6301	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
chr2.90482953.-	chr2	90482953	90482954	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365022	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr11.17160901.-	chr11	17160901	17160902	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30453	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr14.101189473.+	chr14	101189473	101189474	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3729	NM_003836	8788	Hs.533717	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta-like 1 homolog (Drosophila)	protein-coding
chr8.38894824.+	chr8	38894824	38894825	+	0	NA	"intron (NR_027638, intron 11 of 20)"	AluYc3|SINE|Alu	40319	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
chr9.38829828.+	chr9	38829828	38829829	+	0	NA	Intergenic	AluY|SINE|Alu	208743	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr13.50177045.+	chr13	50177045	50177046	+	0	NA	Intergenic	AluY|SINE|Alu	-17326	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr2.224724696.-	chr2	224724696	224724697	-	0	NA	Intergenic	AluSp|SINE|Alu	22377	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr3.23563720.-	chr3	23563720	23563721	-	0	NA	"intron (NM_152653, intron 4 of 5)"	AluY|SINE|Alu	-188094	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	miscRNA
chr1.79749361.-	chr1	79749361	79749362	-	0	NA	Intergenic	AluSx|SINE|Alu	276866	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr18.2679101.+	chr18	2679101	2679102	+	0	NA	"intron (NM_015295, intron 5 of 47)"	AluSg|SINE|Alu	23215	NM_015295	23347	Hs.8118	NM_015295	ENSG00000101596	SMCHD1	-	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
chr14.34667884.+	chr14	34667884	34667885	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247600	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr11.44361800.-	chr11	44361800	44361801	-	0	NA	Intergenic	AluJb|SINE|Alu	30084	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr16.16470779.+	chr16	16470779	16470780	+	0	NA	Intergenic	Intergenic	59313	NR_036447	339044	Hs.743246	XR_172152		PKD1P1	HG1	polycystic kidney disease 1 (autosomal dominant) pseudogene 1	pseudo
chr21.44478101.+	chr21	44478101	44478102	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17939	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr7.1474510.+	chr7	1474510	1474511	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24599	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr20.52741120.-	chr20	52741120	52741121	-	0	NA	Intergenic	AluSx1|SINE|Alu	-49396	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr7.95178720.+	chr7	95178720	95178721	+	0	NA	Intergenic	AluY|SINE|Alu	47205	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr10.35559802.+	chr10	35559802	35559803	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23849	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr11.123357018.-	chr11	123357018	123357019	-	0	NA	Intergenic	AluSz6|SINE|Alu	39510	NM_020716	57476	Hs.732509	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
chr9.35728472.-	chr9	35728472	35728473	-	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	3845	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr22.41715336.-	chr22	41715336	41715337	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17829	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr20.32873740.+	chr20	32873740	32873741	+	0	NA	"intron (NM_000687, intron 8 of 9)"	AluY|SINE|Alu	17475	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr22.38510732.-	chr22	38510732	38510733	-	0	NA	"intron (NM_001004426, intron 13 of 15)"	"intron (NM_001004426, intron 13 of 15)"	4056	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr3.95669585.+	chr3	95669585	95669586	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267548	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr15.90241270.-	chr15	90241270	90241271	-	0	NA	"intron (NM_020212, intron 1 of 16)"	AluY|SINE|Alu	-7242	NM_020212	56964	Hs.177557	NM_020212	ENSG00000140527	WDR93	-	WD repeat domain 93	protein-coding
chr8.56889741.+	chr8	56889741	56889742	+	0	NA	"intron (NM_002350, intron 10 of 12)"	AluSq|SINE|Alu	96719	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr7.156795087.+	chr7	156795087	156795088	+	0	NA	Intergenic	Intergenic	7042	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr4.41386482.+	chr4	41386482	41386483	+	0	NA	"intron (NM_001112717, intron 1 of 25)"	AluY|SINE|Alu	23678	NM_001112718	22998	Hs.335163	NM_001112717	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
chr6.88118016.-	chr6	88118016	88118017	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-326	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr7.965581.+	chr7	965581	965582	+	0	NA	"intron (NM_006869, intron 3 of 10)"	"intron (NM_006869, intron 3 of 10)"	28708	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr5.31921522.+	chr5	31921522	31921523	+	0	NA	"intron (NM_178140, intron 1 of 23)"	AluJb|SINE|Alu	14743	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	miscRNA
chr11.66676671.+	chr11	66676671	66676672	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1331	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chrX.53808318.+	chrX	53808318	53808319	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94621	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr21.14392461.+	chr21	14392461	14392462	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18026	NR_026916	149992	Hs.579474	NR_026916		ANKRD30BP2	C21orf99|CT85|CTSP-1|CTSP1	ankyrin repeat domain 30B pseudogene 2	pseudo
chr20.61471575.+	chr20	61471575	61471576	+	0	NA	TTS (NM_006602)	TTS (NM_006602)	-4901	NM_080750	100132911	Hs.126248	NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1|dJ885L7.5	"DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1"	protein-coding
chr9.128986141.-	chr9	128986141	128986142	-	0	NA	Intergenic	Intergenic	102982	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr1.113336924.+	chr1	113336924	113336925	+	0	NA	Intergenic	MER70B|LTR|ERVL	73735	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr16.68233545.-	chr16	68233545	68233546	-	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	-36591	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr22.38901972.-	chr22	38901972	38901973	-	0	NA	"exon (NM_006386, exon 1 of 13)"	"exon (NM_006386, exon 1 of 13)"	-373	NM_006386	10521	Hs.706116	NM_001098504	ENSG00000100201	DDX17	P72|RH70	DEAD (Asp-Glu-Ala-Asp) box helicase 17	protein-coding
chr20.5213479.-	chr20	5213479	5213480	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81536	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr11.77200947.+	chr11	77200947	77200948	+	0	NA	Intergenic	SVA_D|Other|Other	-15839	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr21.45285351.-	chr21	45285351	45285352	-	0	NA	"intron (NM_020132, intron 1 of 9)"	GC_rich|Low_complexity|Low_complexity	-235	NM_020132	56894	Hs.248785	NM_001037553	ENSG00000160216	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
chr16.70356416.+	chr16	70356416	70356417	+	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	23354	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr9.108210418.+	chr9	108210418	108210419	+	0	NA	promoter-TSS (NM_207647)	promoter-TSS (NM_207647)	93	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr8.27695160.+	chr8	27695160	27695161	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	189	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr14.77494375.-	chr14	77494375	77494376	-	0	NA	"5' UTR (NM_024496, exon 1 of 1)"	"5' UTR (NM_024496, exon 1 of 1)"	-667	NM_024496	64207	Hs.744332	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
chr1.224601856.-	chr1	224601856	224601857	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15843	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr1.78230558.+	chr1	78230558	78230559	+	0	NA	Intergenic	AluSz|SINE|Alu	-4994	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr14.90524018.+	chr14	90524018	90524019	+	0	NA	Intergenic	AluY|SINE|Alu	-4090	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chrX.12171150.+	chrX	12171150	12171151	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14565	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chr19.1761865.+	chr19	1761865	1761866	+	0	NA	"intron (NM_001080488, intron 1 of 1)"	"intron (NM_001080488, intron 1 of 1)"	8203	NM_001080488	390874	Hs.654347	NM_001080488		ONECUT3	OC3	one cut homeobox 3	protein-coding
chr22.20204037.+	chr22	20204037	20204038	+	0	NA	Intergenic	AluSx1|SINE|Alu	10182	NR_026919	150197	Hs.635544	NM_152508		LOC150197	-	uncharacterized LOC150197	miscRNA
chr2.148597933.-	chr2	148597933	148597934	-	0	NA	Intergenic	AluJb|SINE|Alu	4637	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	"activin A receptor, type IIA"	protein-coding
chr6.2085025.+	chr6	2085025	2085026	+	0	NA	"intron (NM_001253846, intron 4 of 10)"	AluY|SINE|Alu	91200	NM_001253846	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr22.46326789.-	chr22	46326789	46326790	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46219	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr3.172180157.+	chr3	172180157	172180158	+	0	NA	Intergenic	AluY|SINE|Alu	-13911	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr11.17788561.+	chr11	17788561	17788562	+	0	NA	"intron (NM_004976, intron 1 of 1)"	AluSx|SINE|Alu	31066	NM_004976	3746	Hs.552896	NM_001112741	ENSG00000129159	KCNC1	KV3.1|KV4|NGK2	"potassium voltage-gated channel, Shaw-related subfamily, member 1"	protein-coding
chr12.129892180.-	chr12	129892180	129892181	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496032	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr2.242530112.+	chr2	242530112	242530113	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	26804	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chrX.21676542.+	chrX	21676542	21676543	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-94	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr13.100025175.+	chr13	100025175	100025176	+	0	NA	"intron (NR_026644, intron 8 of 8)"	AluY|SINE|Alu	16790	NR_030353	693208		NR_030353		MIR623	MIRN623|hsa-mir-623	microRNA 623	miscRNA
chr7.1570434.-	chr7	1570434	1570435	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-66	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr19.1252701.-	chr19	1252701	1252702	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4149	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr20.62512960.-	chr20	62512960	62512961	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13495	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr15.63229209.+	chr15	63229209	63229210	+	0	NA	Intergenic	AluSp|SINE|Alu	-105629	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr2.239058248.+	chr2	239058248	239058249	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10885	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chrX.9707491.+	chrX	9707491	9707492	+	0	NA	"intron (NM_000273, intron 8 of 8)"	"intron (NM_000273, intron 8 of 8)"	26514	NM_000273	4935	Hs.74124	NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
chr22.17443341.+	chr22	17443341	17443342	+	0	NA	"3' UTR (NM_001037814, exon 10 of 10)"	"3' UTR (NM_001037814, exon 10 of 10)"	45771	NM_001037814	128954	Hs.434113	NM_001037814	ENSG00000215568	GAB4	-	"GRB2-associated binding protein family, member 4"	protein-coding
chr1.1847057.-	chr1	1847057	1847058	-	0	NA	"intron (NM_138705, intron 1 of 5)"	"intron (NM_138705, intron 1 of 5)"	-791	NM_138705	163688	Hs.85902	NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin-like 6	protein-coding
chr19.2340026.-	chr19	2340026	2340027	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11397	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr9.139119813.+	chr9	139119813	139119814	+	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	17874	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr15.66993583.+	chr15	66993583	66993584	+	0	NA	Intergenic	CpG	-1091	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chrX.53111678.+	chrX	53111678	53111679	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	136	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr15.51201011.-	chr15	51201011	51201012	-	0	NA	"exon (NM_007347, exon 1 of 21)"	"exon (NM_007347, exon 1 of 21)"	-142	NM_001252127	23431	Hs.413366	NM_001252127	ENSG00000081014	AP4E1	CPSQ4|SPG51	"adaptor-related protein complex 4, epsilon 1 subunit"	protein-coding
chr16.33393303.-	chr16	33393303	33393304	-	0	NA	Intergenic	AluSx1|SINE|Alu	94601	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr9.130734361.+	chr9	130734361	130734362	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8451	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr20.60392337.+	chr20	60392337	60392338	+	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	136381	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr2.109308531.-	chr2	109308531	109308532	-	0	NA	Intergenic	AluY|SINE|Alu	27406	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr5.133968948.+	chr5	133968948	133968949	+	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	-415	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr22.50959136.+	chr22	50959136	50959137	+	0	NA	TTS (NM_014551)	TTS (NM_014551)	4897	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr11.68671225.-	chr11	68671225	68671226	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-78	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr7.124427319.-	chr7	124427319	124427320	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3545	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr8.98771781.-	chr8	98771781	98771782	-	0	NA	Intergenic	AluSq10|SINE|Alu	16028	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr2.239047355.-	chr2	239047355	239047356	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	8	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr1.161508236.+	chr1	161508236	161508237	+	0	NA	Intergenic	AluYf4|SINE|Alu	11582	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr11.100596559.+	chr11	100596559	100596560	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38152	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr16.72357501.-	chr16	72357501	72357502	-	0	NA	Intergenic	AluYb8|SINE|Alu	151152	NM_001160213	83449	Hs.714939	NM_001160213	ENSG00000118557	PMFBP1	-	polyamine modulated factor 1 binding protein 1	protein-coding
chr22.18532582.+	chr22	18532582	18532583	+	0	NA	Intergenic	AluSx1|SINE|Alu	20431	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr8.145752315.-	chr8	145752315	145752316	-	0	NA	"3' UTR (NM_001001795, exon 3 of 3)"	"3' UTR (NM_001001795, exon 3 of 3)"	-101	NM_001024678	441381	Hs.740859	NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
chr17.20588555.-	chr17	20588555	20588556	-	0	NA	Intergenic	SVA_D|Other|Other	27204	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr5.45596287.+	chr5	45596287	45596288	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99933	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr1.3301904.+	chr1	3301904	3301905	+	0	NA	"intron (NM_199454, intron 4 of 16)"	"intron (NM_199454, intron 4 of 16)"	-69243	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr1.169305366.-	chr1	169305366	169305367	-	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	-31820	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr15.32298440.-	chr15	32298440	32298441	-	0	NA	Intergenic	AluY|SINE|Alu	24246	NM_000746	1139	Hs.713151	XM_003960575		CHRNA7	CHRNA7-2|NACHRA7	"cholinergic receptor, nicotinic, alpha 7 (neuronal)"	protein-coding
chr2.44294158.-	chr2	44294158	44294159	-	0	NA	Intergenic	SVA_D|Other|Other	71014	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr19.13497368.+	chr19	13497368	13497369	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119906	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr12.133328154.+	chr12	133328154	133328155	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10297	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr13.23713137.+	chr13	23713137	23713138	+	0	NA	Intergenic	AluY|SINE|Alu	-41923	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr9.35846411.-	chr9	35846411	35846412	-	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	13860	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr2.203027104.+	chr2	203027104	203027105	+	0	NA	"intron (NM_001277372, intron 14 of 21)"	AluSx|SINE|Alu	76218	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr12.120115777.+	chr12	120115777	120115778	+	0	NA	"intron (NM_006253, intron 5 of 6)"	AluY|SINE|Alu	10016	NM_006253	5564	Hs.741184	NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	"protein kinase, AMP-activated, beta 1 non-catalytic subunit"	protein-coding
chr19.5146256.-	chr19	5146256	5146257	-	0	NA	"intron (NM_015015, intron 21 of 22)"	CpG	-177132	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr6.58776968.+	chr6	58776968	58776969	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-489244	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr2.198058492.-	chr2	198058492	198058493	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117029	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr12.96314739.-	chr12	96314739	96314740	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21689	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr7.45775960.-	chr7	45775960	45775961	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32657	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr5.25421795.-	chr5	25421795	25421796	-	0	NA	Intergenic	AluY|SINE|Alu	581103	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr5.33420079.+	chr5	33420079	33420080	+	0	NA	Intergenic	AluY|SINE|Alu	-20723	NM_001258437	6897	Hs.481860	NM_001258437	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
chr5.179167544.+	chr5	179167544	179167545	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	7693	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr17.42869182.+	chr17	42869182	42869183	+	0	NA	Intergenic	AluY|SINE|Alu	32614	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr17.25538797.+	chr17	25538797	25538798	+	0	NA	Intergenic	SVA_E|Other|Other	82225	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	miscRNA
chr5.89746529.-	chr5	89746529	89746530	-	0	NA	Intergenic	AluSz|SINE|Alu	-24056	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr8.26532462.+	chr8	26532462	26532463	+	0	NA	Intergenic	AluSp|SINE|Alu	96541	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chrX.118602879.-	chrX	118602879	118602880	-	0	NA	"non-coding (NR_028443, exon 1 of 1)"	"non-coding (NR_028443, exon 1 of 1)"	-204	NR_028443	100303728	Hs.742239	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	miscRNA
chr12.39300576.+	chr12	39300576	39300577	+	0	NA	Intergenic	CpG	-1156	NM_153634	144402	Hs.40910	NM_153634	ENSG00000139117	CPNE8	-	copine VIII	protein-coding
chr11.12841289.+	chr11	12841289	12841290	+	0	NA	"intron (NM_021961, intron 3 of 12)"	AluY|SINE|Alu	145320	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chr20.62657588.+	chr20	62657588	62657589	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8109	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr12.104697595.+	chr12	104697595	104697596	+	0	NA	promoter-TSS (NM_001008394)	promoter-TSS (NM_001008394)	85	NM_001008394	493861	Hs.659857	NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
chr19.10342074.+	chr19	10342074	10342075	+	0	NA	promoter-TSS (NM_004230)	promoter-TSS (NM_004230)	-126	NM_004230	9294	Hs.655405	NM_004230		S1PR2	AGR16|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
chr13.50297703.+	chr13	50297703	50297704	+	0	NA	"intron (NM_002267, intron 7 of 16)"	AluSg7|SINE|Alu	-32080	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr20.5213460.-	chr20	5213460	5213461	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81555	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr10.46999065.+	chr10	46999065	46999066	+	0	NA	"exon (NM_014696, exon 3 of 3)"	"exon (NM_014696, exon 3 of 3)"	5519	NM_014696	9721	Hs.523375	NM_014696		GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
chr5.14303306.+	chr5	14303306	14303307	+	0	NA	"intron (NM_007118, intron 7 of 56)"	"intron (NM_007118, intron 7 of 56)"	159477	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
chr22.19747428.+	chr22	19747428	19747429	+	0	NA	"intron (NM_080646, intron 2 of 8)"	"intron (NM_080646, intron 2 of 8)"	3202	NM_005992	6899	Hs.173984	NM_005992	ENSG00000184058	TBX1	CAFS|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCFS	T-box 1	protein-coding
chr10.128174369.-	chr10	128174369	128174370	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35641	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr5.114712355.-	chr5	114712355	114712356	-	0	NA	Intergenic	MIRb|SINE|MIR	79897	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr2.241905868.+	chr2	241905868	241905869	+	0	NA	"intron (NR_033841, intron 1 of 8)"	CpG	1000	NR_033841	200772	Hs.647893	NR_033841	ENSG00000233392	LOC200772	-	uncharacterized LOC200772	miscRNA
chr22.41215394.-	chr22	41215394	41215395	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	2	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr19.1252704.-	chr19	1252704	1252705	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4152	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr4.185174268.+	chr4	185174268	185174269	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35154	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr4.1804941.-	chr4	1804941	1804942	-	0	NA	"intron (NM_001163213, intron 8 of 17)"	CpG-19480	-9902	NM_022965	2261	Hs.1420	NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
chrY.9930603.-	chrY	9930603	9930604	-	0	NA	Intergenic	Intergenic	-182196	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr19.30963829.-	chr19	30963829	30963830	-	0	NA	"intron (NM_014717, intron 2 of 4)"	AluSx|SINE|Alu	-100501	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
chr16.4303616.+	chr16	4303616	4303617	+	0	NA	"intron (NR_039999, intron 1 of 2)"	CpG	174	NR_039999	100507501	Hs.632979	NR_039999	ENSG00000262468	LOC100507501	-	uncharacterized LOC100507501	miscRNA
chr10.134216445.+	chr10	134216445	134216446	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5743	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr7.140220125.+	chr7	140220125	140220126	+	0	NA	"intron (NM_015689, intron 16 of 17)"	"intron (NM_015689, intron 16 of 17)"	-40756	NM_013446	23608	Hs.490347	NM_001145125	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
chr16.68233550.+	chr16	68233550	68233551	+	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	36586	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr1.110881055.-	chr1	110881055	110881056	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-738	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr18.74140166.+	chr18	74140166	74140167	+	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	66980	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr11.64929033.-	chr11	64929033	64929034	-	0	NA	Intergenic	AluSc5|SINE|Alu	8674	NM_001008778	387778	Hs.450642	NM_001008778	ENSG00000204710	SPDYC	RINGOC|Ringo2	speedy homolog C (Xenopus laevis)	protein-coding
chr1.10743567.-	chr1	10743567	10743568	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-113166	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr22.41215503.-	chr22	41215503	41215504	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	111	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr1.218165387.-	chr1	218165387	218165388	-	0	NA	Intergenic	AluSq|SINE|Alu	-99145	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr16.58021661.+	chr16	58021661	58021662	+	0	NA	"3' UTR (NM_199456, exon 8 of 8)"	"3' UTR (NM_199456, exon 8 of 8)"	11322	NM_199456	374739	Hs.132976	NM_199046		TEPP	-	"testis, prostate and placenta expressed"	protein-coding
chr2.44380954.-	chr2	44380954	44380955	-	0	NA	Intergenic	AluY|SINE|Alu	15046	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr7.129803724.-	chr7	129803724	129803725	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41614	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr16.67519978.+	chr16	67519978	67519979	+	0	NA	Intergenic	AluY|SINE|Alu	-2262	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr6.42113624.-	chr6	42113624	42113625	-	0	NA	Intergenic	AluSq2|SINE|Alu	2909	NM_001164446	647024	Hs.444277	NM_001164446	ENSG00000188112	C6orf132	bA7K24.2	chromosome 6 open reading frame 132	protein-coding
chr10.134886646.-	chr10	134886646	134886647	-	0	NA	Intergenic	Intergenic	14763	NM_001083909	84435	Hs.435183	NM_032422	ENSG00000197177	GPR123	-	G protein-coupled receptor 123	protein-coding
chr6.65337698.-	chr6	65337698	65337699	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673613	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr9.137200931.-	chr9	137200931	137200932	-	0	NA	Intergenic	Intergenic	17385	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr1.1580353.+	chr1	1580353	1580354	+	0	NA	"intron (NM_033486, intron 6 of 19)"	AluSc8|SINE|Alu	12194	NR_002946	8511	Hs.671760	NR_002946	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
chr3.136533361.-	chr3	136533361	136533362	-	0	NA	Intergenic	AluSg|SINE|Alu	4500	NM_001097599	80723	Hs.477692	NM_001097599	ENSG00000168917	SLC35G2	TMEM22	"solute carrier family 35, member G2"	protein-coding
chr11.5623394.-	chr11	5623394	5623395	-	0	NA	"intron (NM_001198645, intron 1 of 5)"	AluY|SINE|Alu	-5529	NM_001003818	117854	Hs.729048	NM_001003818	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
chr14.51123323.+	chr14	51123323	51123324	+	0	NA	"intron (NM_021818, intron 2 of 4)"	AluY|SINE|Alu	11748	NM_021818	60485	Hs.706933	NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador homolog 1 (Drosophila)	protein-coding
chr2.241500693.-	chr2	241500693	241500694	-	0	NA	"intron (NM_001033575, intron 1 of 2)"	CpG	-1222	NM_001033575	285193	Hs.369297	NM_001033575	ENSG00000188542	DUSP28	DUSP26|VHP	dual specificity phosphatase 28	protein-coding
chr7.156795092.+	chr7	156795092	156795093	+	0	NA	Intergenic	Intergenic	7037	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr15.40538612.+	chr15	40538612	40538613	+	0	NA	"intron (NM_001276718, intron 2 of 9)"	"intron (NM_001276718, intron 2 of 9)"	6498	NM_001039905	644809	Hs.631718	NM_001039905	ENSG00000176753	C15orf56	-	chromosome 15 open reading frame 56	protein-coding
chr7.99097722.-	chr7	99097722	99097723	-	0	NA	"5' UTR (NM_032164, exon 1 of 3)"	"5' UTR (NM_032164, exon 1 of 3)"	-155	NM_032164	84124	Hs.386324	NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
chr16.22675563.-	chr16	22675563	22675564	-	0	NA	Intergenic	AluJr|SINE|Alu	54040	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr19.1065109.+	chr19	1065109	1065110	+	0	NA	promoter-TSS (NM_001258328)	promoter-TSS (NM_001258328)	-813	NM_001258328	23526	Hs.465521	NM_001258328	ENSG00000180448	HMHA1	ARHGAP45|HA-1|HLA-HA1	histocompatibility (minor) HA-1	protein-coding
chr10.134216486.-	chr10	134216486	134216487	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5784	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr4.85768678.-	chr4	85768678	85768679	-	0	NA	"intron (NM_014991, intron 5 of 67)"	AluSc8|SINE|Alu	-118866	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr6.33948491.-	chr6	33948491	33948492	-	0	NA	Intergenic	Intergenic	-19337	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr7.100719720.-	chr7	100719720	100719721	-	0	NA	Intergenic	AluJr|SINE|Alu	9066	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr2.120775603.+	chr2	120775603	120775604	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4818	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr5.37837598.-	chr5	37837598	37837599	-	0	NA	"intron (NM_000514, intron 1 of 2)"	CpG	1669	NM_001190468	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
chr16.53448435.+	chr16	53448435	53448436	+	0	NA	Intergenic	AluSp|SINE|Alu	-19916	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr1.57087964.+	chr1	57087964	57087965	+	0	NA	Intergenic	AluSz|SINE|Alu	-23026	NM_006252	5563	Hs.437039	NM_006252	ENSG00000162409	PRKAA2	AMPK|AMPK2|AMPKa2|PRKAA	"protein kinase, AMP-activated, alpha 2 catalytic subunit"	protein-coding
chr11.71205799.+	chr11	71205799	71205800	+	0	NA	"intron (NM_018161, intron 18 of 20)"	AluSp|SINE|Alu	-32514	NM_001012503	440050	Hs.710675	NM_001012503	ENSG00000244411	KRTAP5-7	KRTAP5-3|KRTAP5.7	keratin associated protein 5-7	protein-coding
chr2.38303411.+	chr2	38303411	38303412	+	0	NA	promoter-TSS (NM_000104)	promoter-TSS (NM_000104)	-88	NM_000104	1545	Hs.154654	NM_000104	ENSG00000138061	CYP1B1	CP1B|CYPIB1|GLC3A|P4501B1	"cytochrome P450, family 1, subfamily B, polypeptide 1"	protein-coding
chr8.146047174.-	chr8	146047174	146047175	-	0	NA	Intergenic	Intergenic	5729	NM_003416	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
chr1.149646741.-	chr1	149646741	149646742	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70288	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr5.2543463.-	chr5	2543463	2543464	-	0	NA	Intergenic	Intergenic	-208306	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr15.73830932.-	chr15	73830932	73830933	-	0	NA	"intron (NM_001042367, intron 2 of 5)"	AluYk4|SINE|Alu	-94821	NM_012428	27020	Hs.187866	NM_001161363	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
chr2.126700687.+	chr2	126700687	126700688	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-712824	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr5.3764254.+	chr5	3764254	3764255	+	0	NA	Intergenic	Intergenic	168086	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr18.77244880.-	chr18	77244880	77244881	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84554	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr9.120507369.-	chr9	120507369	120507370	-	0	NA	Intergenic	CpG	-40916	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr3.51753385.+	chr3	51753385	51753386	+	0	NA	TTS (NM_001130063)	TTS (NM_001130063)	12304	NM_000839	2912	Hs.121510	NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	"glutamate receptor, metabotropic 2"	protein-coding
chr22.38510740.+	chr22	38510740	38510741	+	0	NA	"intron (NM_001004426, intron 13 of 15)"	"intron (NM_001004426, intron 13 of 15)"	-4064	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr13.111268307.+	chr13	111268307	111268308	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	376	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr16.341084.-	chr16	341084	341085	-	0	NA	"intron (NM_181050, intron 8 of 9)"	CpG	-7966	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr16.443649.-	chr16	443649	443650	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3543	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr19.18416246.+	chr19	18416246	18416247	+	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	17755	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr10.131769843.-	chr10	131769843	131769844	-	0	NA	Intergenic	CpG-3433	7752	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr4.55034957.+	chr4	55034957	55034958	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60307	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr17.9053907.-	chr17	9053907	9053908	-	0	NA	"intron (NM_004822, intron 2 of 6)"	"intron (NM_004822, intron 2 of 6)"	-129048	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr9.8857430.-	chr9	8857430	8857431	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123484	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr9.131012176.+	chr9	131012176	131012177	+	0	NA	"intron (NM_001005336, intron 18 of 21)"	MIR3|SINE|MIR	-4867	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr7.25609219.+	chr7	25609219	25609220	+	0	NA	Intergenic	AluSz|SINE|Alu	271411	NR_046486	100873753		NR_046486		RNU6-16	-	"RNA, U6 small nuclear 16"	snRNA
chr10.135008760.-	chr10	135008760	135008761	-	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	-34789	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr8.125234430.-	chr8	125234430	125234431	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150510	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr16.340996.+	chr16	340996	340997	+	0	NA	"intron (NM_181050, intron 8 of 9)"	"intron (NM_181050, intron 8 of 9)"	7878	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr7.65842171.-	chr7	65842171	65842172	-	0	NA	"non-coding (NR_026873, exon 5 of 5)"	"non-coding (NR_026873, exon 5 of 5)"	-23224	NR_026873	285908	Hs.50755	NM_181722	ENSG00000179406	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	miscRNA
chr7.157129520.+	chr7	157129520	157129521	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-190	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr5.855263.-	chr5	855263	855264	-	0	NA	Intergenic	Intergenic	4162	NM_024786	79844	Hs.732788	NM_024786	ENSG00000188818	ZDHHC11	ZNF399	"zinc finger, DHHC-type containing 11"	protein-coding
chr12.133143513.-	chr12	133143513	133143514	-	0	NA	"intron (NM_001142641, intron 5 of 16)"	"intron (NM_001142641, intron 5 of 16)"	-43524	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr1.183670825.-	chr1	183670825	183670826	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48377	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr7.394828.+	chr7	394828	394829	+	0	NA	Intergenic	Intergenic	-24563	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr2.167467337.-	chr2	167467337	167467338	-	0	NA	Intergenic	Intergenic	123856	NM_002976	6332	Hs.644853	NM_002976	ENSG00000136546	SCN7A	NaG|Nav2.1|Nav2.2|SCN6A	"sodium channel, voltage-gated, type VII, alpha subunit"	protein-coding
chrX.9754169.-	chrX	9754169	9754170	-	0	NA	promoter-TSS (NM_001649)	promoter-TSS (NM_001649)	327	NM_001649	357	Hs.567236	NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
chr9.4108918.-	chr9	4108918	4108919	-	0	NA	"intron (NM_152629, intron 3 of 9)"	"intron (NM_152629, intron 3 of 9)"	-43265	NM_152629	169792	Hs.644570	NM_001042413	ENSG00000107249	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
chr14.73651096.-	chr14	73651096	73651097	-	0	NA	"intron (NM_000021, intron 5 of 11)"	SVA_F|Other|Other	-47953	NM_007318	5663	Hs.3260	NM_000021	ENSG00000080815	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
chr6.170055420.+	chr6	170055420	170055421	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46739	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr3.1144520.+	chr3	1144520	1144521	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9891	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr12.56907980.-	chr12	56907980	56907981	-	0	NA	Intergenic	AluSz6|SINE|Alu	7629	NM_002898	5939	Hs.683360	NM_002898		RBMS2	SCR3	"RNA binding motif, single stranded interacting protein 2"	protein-coding
chr4.77348109.-	chr4	77348109	77348110	-	0	NA	Intergenic	AluY|SINE|Alu	8144	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr1.55483774.+	chr1	55483774	55483775	+	0	NA	Intergenic	AluSx1|SINE|Alu	19157	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr8.98771886.-	chr8	98771886	98771887	-	0	NA	Intergenic	AluSq10|SINE|Alu	15923	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr13.107188964.+	chr13	107188964	107188965	+	0	NA	Intergenic	CpG-6584	-1576	NM_004093	1948	Hs.149239	NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5	ephrin-B2	protein-coding
chr22.38336355.-	chr22	38336355	38336356	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13299	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr12.132389001.+	chr12	132389001	132389002	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9722	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr8.8559312.-	chr8	8559312	8559313	-	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	354	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr17.74810300.+	chr17	74810300	74810301	+	0	NA	Intergenic	AluSx3|SINE|Alu	-54498	NM_001199172	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr2.71562074.-	chr2	71562074	71562075	-	0	NA	"intron (NM_014497, intron 1 of 27)"	"intron (NM_014497, intron 1 of 27)"	-3189	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr7.132214511.+	chr7	132214511	132214512	+	0	NA	"intron (NM_181775, intron 2 of 4)"	AluY|SINE|Alu	46812	NM_020911	91584	Hs.511454	NM_001105543	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
chr1.236252203.+	chr1	236252203	236252204	+	0	NA	Intergenic	AluY|SINE|Alu	-23722	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr3.49200878.+	chr3	49200878	49200879	+	0	NA	"exon (NM_022903, exon 2 of 2)"	"exon (NM_022903, exon 2 of 2)"	2907	NM_022903	64925	Hs.211472	NM_022903	ENSG00000177352	CCDC71	-	coiled-coil domain containing 71	protein-coding
chr1.121484742.-	chr1	121484742	121484743	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-223832	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chrX.142322494.-	chrX	142322494	142322495	-	0	NA	Intergenic	AluY|SINE|Alu	-208790	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	"SPANX family, member N4"	protein-coding
chr5.91967062.-	chr5	91967062	91967063	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-939437	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr10.99094411.+	chr10	99094411	99094412	+	0	NA	promoter-TSS (NM_012083)	promoter-TSS (NM_012083)	47	NM_012083	23401	Hs.140720	NM_012083	ENSG00000181274	FRAT2	-	frequently rearranged in advanced T-cell lymphomas 2	protein-coding
chr14.102109487.-	chr14	102109487	102109488	-	0	NA	Intergenic	AluY|SINE|Alu	-81799	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr12.43781899.-	chr12	43781899	43781900	-	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	-163825	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr4.166248604.+	chr4	166248604	166248605	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-214	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr6.89378006.+	chr6	89378006	89378007	+	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	295342	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr5.45596276.+	chr5	45596276	45596277	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99944	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr5.86907863.-	chr5	86907863	86907864	-	0	NA	Intergenic	AluY|SINE|Alu	199013	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr1.171662944.-	chr1	171662944	171662945	-	0	NA	Intergenic	SVA_C|Other|Other	41171	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr18.5295575.+	chr18	5295575	5295576	+	0	NA	"intron (NM_001243704, intron 1 of 3)"	CpG	126	NM_001243702	7541	Hs.592340	NM_001143823	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
chr16.4337498.-	chr16	4337498	4337499	-	0	NA	Intergenic	AluSq2|SINE|Alu	14497	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4 (activating enhancer binding protein 4)	protein-coding
chr1.32560013.+	chr1	32560013	32560014	+	0	NA	"intron (NM_018056, intron 6 of 8)"	AluSx4|SINE|Alu	-13631	NM_012316	23633	Hs.711019	NM_012316	ENSG00000025800	KPNA6	IPOA7|KPNA7	karyopherin alpha 6 (importin alpha 7)	protein-coding
chr1.54839935.-	chr1	54839935	54839936	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32044	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr3.29051433.-	chr3	29051433	29051434	-	0	NA	Intergenic	AluSc8|SINE|Alu	271370	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr1.11960174.+	chr1	11960174	11960175	+	0	NA	Intergenic	AluSc8|SINE|Alu	26311	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
chr13.68791150.-	chr13	68791150	68791151	-	0	NA	Intergenic	AluY|SINE|Alu	-668307	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr8.146047173.-	chr8	146047173	146047174	-	0	NA	Intergenic	Intergenic	5730	NM_003416	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
chr7.1149764.-	chr7	1149764	1149765	-	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	-22041	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr11.89400851.-	chr11	89400851	89400852	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8386	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr11.69369129.+	chr11	69369129	69369130	+	0	NA	Intergenic	Intergenic	-86744	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr15.63892648.-	chr15	63892648	63892649	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-378	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr19.18180441.+	chr19	18180441	18180442	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17256	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chrX.689407.-	chrX	689407	689408	-	0	NA	Intergenic	Intergenic	-104328	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr4.77348106.-	chr4	77348106	77348107	-	0	NA	Intergenic	AluY|SINE|Alu	8147	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr16.49892637.+	chr16	49892637	49892638	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-807	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr1.65532996.+	chr1	65532996	65532997	+	0	NA	Intergenic	CpG	-8805	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr16.23607521.-	chr16	23607521	23607522	-	0	NA	"exon (NM_005003, exon 1 of 5)"	"exon (NM_005003, exon 1 of 5)"	-118	NM_005003	4706	Hs.189716	NM_005003	ENSG00000004779	NDUFAB1	ACP|FASN2A|SDAP	"NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa"	protein-coding
chr2.194196045.+	chr2	194196045	194196046	+	0	NA	Intergenic	AluSp|SINE|Alu	581474	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071	"PCGEM1, prostate-specific transcript (non-protein coding)"	miscRNA
chr22.43238156.+	chr22	43238156	43238157	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15252	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr3.50701723.+	chr3	50701723	50701724	+	0	NA	Intergenic	AluY|SINE|Alu	-10788	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr7.5629213.+	chr7	5629213	5629214	+	0	NA	Intergenic	AluJo|SINE|Alu	-3223	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr5.117912695.+	chr5	117912695	117912696	+	0	NA	Intergenic	AluY|SINE|Alu	-397586	NR_036262	100422885		NR_036262		MIR1244-2	-	microRNA 1244-2	miscRNA
chr10.59080713.-	chr10	59080713	59080714	-	0	NA	Intergenic	AluY|SINE|Alu	16394	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr2.207036817.+	chr2	207036817	207036818	+	0	NA	Intergenic	SVA_D|Other|Other	9865	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr21.42218968.+	chr21	42218968	42218969	+	0	NA	promoter-TSS (NR_073202)	promoter-TSS (NR_073202)	71	NM_001389	1826	Hs.397800	NM_001271534	ENSG00000171587	DSCAM	CHD2-42|CHD2-52	Down syndrome cell adhesion molecule	protein-coding
chr20.56195538.+	chr20	56195538	56195539	+	0	NA	promoter-TSS (NM_030776)	promoter-TSS (NM_030776)	94	NM_001160419	81030	Hs.302123	NM_001160417	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
chr1.236252119.+	chr1	236252119	236252120	+	0	NA	Intergenic	Intergenic	-23638	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr22.48728680.+	chr22	48728680	48728681	+	0	NA	Intergenic	Intergenic	58504	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	miscRNA
chr6.46742367.+	chr6	46742367	46742368	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18727	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr20.55247405.+	chr20	55247405	55247406	+	0	NA	Intergenic	AluSz6|SINE|Alu	43047	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr7.4357626.+	chr7	4357626	4357627	+	0	NA	Intergenic	AluSq2|SINE|Alu	188309	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr2.126700694.-	chr2	126700694	126700695	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712817	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr17.18785222.-	chr17	18785222	18785223	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16440	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr4.184656694.-	chr4	184656694	184656695	-	0	NA	Intergenic	SVA_E|Other|Other	-76274	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY	trafficking protein particle complex 11	protein-coding
chr16.3203779.+	chr16	3203779	3203780	+	0	NA	Intergenic	AluSg|SINE|Alu	18645	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr16.70148602.+	chr16	70148602	70148603	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1073	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr2.207036846.-	chr2	207036846	207036847	-	0	NA	Intergenic	SVA_D|Other|Other	-9894	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr15.41674353.-	chr15	41674353	41674354	-	0	NA	Intergenic	SVA_F|Other|Other	-20305	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr8.67618013.-	chr8	67618013	67618014	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6640	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr2.232202242.+	chr2	232202242	232202243	+	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	-25177	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr19.17585877.+	chr19	17585877	17585878	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4577	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr8.123206114.+	chr8	123206114	123206115	+	0	NA	Intergenic	AluYk4|SINE|Alu	-552484	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
chr12.132353180.+	chr12	132353180	132353181	+	0	NA	Intergenic	Intergenic	-26099	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr19.34310806.+	chr19	34310806	34310807	+	0	NA	Intergenic	CpG	23055	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr22.22550454.-	chr22	22550454	22550455	-	0	NA	Intergenic	Intergenic	48746	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr17.46187002.+	chr17	46187002	46187003	+	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	2055	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr2.127729791.+	chr2	127729791	127729792	+	0	NA	Intergenic	CpG	135112	NM_139343	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
chr12.56394742.-	chr12	56394742	56394743	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3699	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chrM.873.-	chrM	873	874	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr15.37172782.-	chr15	37172782	37172783	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5952	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr12.129892270.+	chr12	129892270	129892271	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	495942	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr8.99416777.-	chr8	99416777	99416778	-	0	NA	Intergenic	AluYk4|SINE|Alu	22473	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr22.38166153.-	chr22	38166153	38166154	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	-23912	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr10.135192347.-	chr10	135192347	135192348	-	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	394	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr2.86422291.+	chr2	86422291	86422292	+	0	NA	"intron (NM_006839, intron 1 of 14)"	CpG	602	NM_001100169	10989	Hs.148559	NM_001100169	ENSG00000132305	IMMT	HMP|MINOS2|P87|P87/89|P89|PIG52	"inner membrane protein, mitochondrial"	protein-coding
chr6.33811472.+	chr6	33811472	33811473	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39679	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr5.672018.+	chr5	672018	672019	+	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	21492	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr20.48720688.+	chr20	48720688	48720689	+	0	NA	"intron (NM_001257397, intron 1 of 4)"	AluSc|SINE|Alu	9047	NM_001257399	7335	Hs.420529	NM_001032288	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
chr12.34191945.+	chr12	34191945	34191946	+	0	NA	Intergenic	AluSp|SINE|Alu	16729	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.1494532.-	chr5	1494532	1494533	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29544	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chrX.85551240.+	chrX	85551240	85551241	+	0	NA	"intron (NM_001139515, intron 1 of 11)"	AluY|SINE|Alu	33269	NM_001139515	117154	Hs.86603	NM_001139514	ENSG00000126733	DACH2	-	dachshund homolog 2 (Drosophila)	protein-coding
chr14.101346782.+	chr14	101346782	101346783	+	0	NA	promoter-TSS (NR_029965)	promoter-TSS (NR_029965)	-562	NR_029965	574038		NR_029965	ENSG00000208001	MIR431	MIRN431|hsa-mir-431|miRNA431	microRNA 431	miscRNA
chr2.32250707.+	chr2	32250707	32250708	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14137	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr8.41219159.-	chr8	41219159	41219160	-	0	NA	Intergenic	Intergenic	52169	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr13.36950842.-	chr13	36950842	36950843	-	0	NA	Intergenic	AluSp|SINE|Alu	6525	NM_001142294	23111	Hs.440414	NM_001142294	ENSG00000133104	SPG20	SPARTIN|TAHCCP1	spastic paraplegia 20 (Troyer syndrome)	protein-coding
chr15.77224240.-	chr15	77224240	77224241	-	0	NA	"exon (NM_001271837, exon 1 of 8)"	"exon (NM_001271837, exon 1 of 8)"	-278	NM_001271837	5955	Hs.79088	NM_001271837	ENSG00000117906	RCN2	E6BP|ERC-55|ERC55|TCBP49	"reticulocalbin 2, EF-hand calcium binding domain"	protein-coding
chr14.100647479.+	chr14	100647479	100647480	+	0	NA	Intergenic	SVA_D|Other|Other	-21467	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	"delta(4)-desaturase, sphingolipid 2"	protein-coding
chr13.19728095.-	chr13	19728095	19728096	-	0	NA	Intergenic	Intergenic	-10973	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr7.149157218.-	chr7	149157218	149157219	-	0	NA	"intron (NM_015694, intron 1 of 5)"	CpG	-835	NM_015694	27153	Hs.38512	NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
chr17.27605465.+	chr17	27605465	27605466	+	0	NA	"intron (NM_020772, intron 2 of 3)"	AluY|SINE|Alu	15701	NM_020772	57532	Hs.462598	NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82	nuclear fragile X mental retardation protein interacting protein 2	protein-coding
chr22.22550450.+	chr22	22550450	22550451	+	0	NA	Intergenic	Intergenic	-48750	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr7.1116550.+	chr7	1116550	1116551	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	-9893	NM_001505	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr6.141000359.-	chr6	141000359	141000360	-	0	NA	Intergenic	AluY|SINE|Alu	4592	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr6.31211943.+	chr6	31211943	31211944	+	0	NA	Intergenic	SVA_F|Other|Other	27970	NM_001243042	3107	Hs.743218	NM_001243042	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLC-C|PSORS1	"major histocompatibility complex, class I, C"	protein-coding
chr6.1876508.+	chr6	1876508	1876509	+	0	NA	"intron (NM_001253846, intron 7 of 10)"	"intron (NM_001253846, intron 7 of 10)"	265827	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr2.242479917.-	chr2	242479917	242479918	-	0	NA	Intergenic	Intergenic	18229	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr10.30847994.+	chr10	30847994	30847995	+	0	NA	Intergenic	AluSp|SINE|Alu	70653	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
chr14.105715268.-	chr14	105715268	105715269	-	0	NA	"exon (NM_033271, exon 2 of 5)"	"exon (NM_033271, exon 2 of 5)"	-389	NM_033271	90135	Hs.7367	NM_033271	ENSG00000184887	BTBD6	BDPL	BTB (POZ) domain containing 6	protein-coding
chr13.66584758.-	chr13	66584758	66584759	-	0	NA	Intergenic	AluY|SINE|Alu	814543	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr8.54998375.-	chr8	54998375	54998376	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16202	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr2.88284257.-	chr2	88284257	88284258	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	AluY|SINE|Alu	-1052	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
chr2.558070.+	chr2	558070	558071	+	0	NA	Intergenic	CpG	119369	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
chr12.107112627.+	chr12	107112627	107112628	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34149	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr20.3079635.+	chr20	3079635	3079636	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7922	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	miscRNA
chr22.44845328.-	chr22	44845328	44845329	-	0	NA	Intergenic	Intergenic	-48677	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr17.1165712.-	chr17	1165712	1165713	-	0	NA	Intergenic	AluSg|SINE|Alu	8146	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr17.4453853.-	chr17	4453853	4453854	-	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	-4828	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr2.120964355.-	chr2	120964355	120964356	-	0	NA	Intergenic	Intergenic	-16629	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr1.179743530.+	chr1	179743530	179743531	+	0	NA	"intron (NM_173509, intron 1 of 4)"	Charlie4z|DNA|hAT-Charlie	31232	NM_173509	148753	Hs.729631	NM_173509	ENSG00000143340	FAM163A	C1orf76|NDSP|RP11-12M5.2	"family with sequence similarity 163, member A"	protein-coding
chr9.140211138.+	chr9	140211138	140211139	+	0	NA	"intron (NM_017820, intron 19 of 21)"	"intron (NM_017820, intron 19 of 21)"	-14435	NM_001004354	441478	Hs.732282	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
chr5.140315607.-	chr5	140315607	140315608	-	0	NA	"intron (NM_018898, intron 1 of 3)"	AluSx1|SINE|Alu	-9305	NM_018898	56135	Hs.199343	NM_018898	ENSG00000248383	PCDHAC1	PCDH-ALPHA-C1	"protocadherin alpha subfamily C, 1"	protein-coding
chr8.33580500.-	chr8	33580500	33580501	-	0	NA	Intergenic	CpG	123061	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
chr3.42642390.+	chr3	42642390	42642391	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	182	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr1.35351616.+	chr1	35351616	35351617	+	0	NA	"intron (NM_001080418, intron 4 of 9)"	CpG-858	19368	NM_001080418	58512	Hs.733945	NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3	"discs, large (Drosophila) homolog-associated protein 3"	protein-coding
chr6.126111923.-	chr6	126111923	126111924	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-14	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr12.109325575.+	chr12	109325575	109325576	+	0	NA	"intron (NM_018711, intron 10 of 14)"	AluY|SINE|Alu	51718	NM_001917	1610	Hs.113227	NM_001917	ENSG00000110887	DAO	DAAO|DAMOX|OXDA	D-amino-acid oxidase	protein-coding
chr8.26541415.+	chr8	26541415	26541416	+	0	NA	Intergenic	SVA_A|Other|Other	105494	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr14.103236977.-	chr14	103236977	103236978	-	0	NA	Intergenic	L2c|LINE|L2	6839	NM_001199427	7187	Hs.510528	NM_001199427	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor-associated factor 3	protein-coding
chr16.51667294.+	chr16	51667294	51667295	+	0	NA	Intergenic	AluY|SINE|Alu	440553	NM_001242473	388276	Hs.534669	NM_001242473	ENSG00000261190	C16orf97	-	chromosome 16 open reading frame 97	protein-coding
chr9.11197024.-	chr9	11197024	11197025	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584301	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr20.33726544.-	chr20	33726544	33726545	-	0	NA	"intron (NM_001145025, intron 3 of 9)"	AluY|SINE|Alu	-8617	NR_026728	55741	Hs.720177	NM_001145025	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	"ER degradation enhancer, mannosidase alpha-like 2"	protein-coding
chr8.143698148.-	chr8	143698148	143698149	-	0	NA	Intergenic	Intergenic	2315	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr7.158217986.-	chr7	158217986	158217987	-	0	NA	"intron (NM_130842, intron 1 of 21)"	CpG	-107519	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr10.64708106.-	chr10	64708106	64708107	-	0	NA	Intergenic	SVA_E|Other|Other	129179	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr5.86907854.+	chr5	86907854	86907855	+	0	NA	Intergenic	AluY|SINE|Alu	-199004	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr8.143698147.-	chr8	143698147	143698148	-	0	NA	Intergenic	Intergenic	2314	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr11.17905663.-	chr11	17905663	17905664	-	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	-128974	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr21.45649039.-	chr21	45649039	45649040	-	0	NA	"intron (NM_015259, intron 6 of 6)"	"intron (NM_015259, intron 6 of 6)"	-11795	NM_015259	23308	Hs.14155	NM_015259		ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T-cell co-stimulator ligand	protein-coding
chr12.95495660.+	chr12	95495660	95495661	+	0	NA	"intron (NM_018351, intron 14 of 20)"	AluSc|SINE|Alu	-28256	NM_001032287	7181	Hs.707524	NM_001032287	ENSG00000120798	NR2C1	TR2	"nuclear receptor subfamily 2, group C, member 1"	protein-coding
chr19.17585856.+	chr19	17585856	17585857	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4556	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr3.20353541.-	chr3	20353541	20353542	-	0	NA	Intergenic	AluYk4|SINE|Alu	125817	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr9.28773096.+	chr9	28773096	28773097	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53793	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr3.13149429.-	chr3	13149429	13149430	-	0	NA	Intergenic	Intergenic	34812	NM_001134382	9922	Hs.475506	NM_001134382	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
chr12.49035535.-	chr12	49035535	49035536	-	0	NA	Intergenic	SVA_A|Other|Other	-12766	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr2.45870930.-	chr2	45870930	45870931	-	0	NA	Intergenic	CpG	8113	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	"protein kinase C, epsilon"	protein-coding
chr9.135013573.+	chr9	135013573	135013574	+	0	NA	Intergenic	AluSz|SINE|Alu	-23761	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr12.38493657.+	chr12	38493657	38493658	+	0	NA	Intergenic	Intergenic	-216900	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr17.57336742.-	chr17	57336742	57336743	-	0	NA	"intron (NM_001165993, intron 6 of 9)"	AluY|SINE|Alu	-38914	NM_001165994	284161	Hs.631744	NM_001165993	ENSG00000153982	GDPD1	GDE4	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
chr1.40260006.+	chr1	40260006	40260007	+	0	NA	Intergenic	AluY|SINE|Alu	-5473	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr14.105158932.-	chr14	105158932	105158933	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2989	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr16.28874237.+	chr16	28874237	28874238	+	0	NA	promoter-TSS (NM_001145796)	promoter-TSS (NM_001145796)	-841	NM_001145795	25970	Hs.15744	NM_001145795	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
chr4.138974461.-	chr4	138974461	138974462	-	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	35707	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr8.144512826.+	chr8	144512826	144512827	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-224	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr9.85145053.+	chr9	85145053	85145054	+	0	NA	Intergenic	AluSq2|SINE|Alu	532990	NM_152573	158158	Hs.129136	NM_152573		RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
chr1.101786792.-	chr1	101786792	101786793	-	0	NA	Intergenic	AluY|SINE|Alu	-19659	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr18.60295545.-	chr18	60295545	60295546	-	0	NA	Intergenic	AluSc5|SINE|Alu	87127	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
chr12.109137858.-	chr12	109137858	109137859	-	0	NA	Intergenic	AluSg|SINE|Alu	12532	NM_014325	23603	Hs.330384	NM_001105237	ENSG00000110880	CORO1C	HCRNN4	"coronin, actin binding protein, 1C"	protein-coding
chr12.66636796.-	chr12	66636796	66636797	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53818	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr12.107215675.-	chr12	107215675	107215676	-	0	NA	"intron (NM_018157, intron 3 of 8)"	AluY|SINE|Alu	47066	NR_040246	100287944	Hs.742087	NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	miscRNA
chr6.1457468.+	chr6	1457468	1457469	+	0	NA	Intergenic	LTR12C|LTR|ERV1	67399	NM_001452	2295	Hs.484423	NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
chr9.129412914.-	chr9	129412914	129412915	-	0	NA	"intron (NM_001174146, intron 2 of 7)"	"intron (NM_001174146, intron 2 of 7)"	-36192	NM_002316	4010	Hs.129133	NM_001174146	ENSG00000136944	LMX1B	LMX1.2|NPS1	"LIM homeobox transcription factor 1, beta"	protein-coding
chr8.41166070.+	chr8	41166070	41166071	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	920	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr16.87360649.-	chr16	87360649	87360650	-	0	NA	Intergenic	Intergenic	9623	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr17.65997503.+	chr17	65997503	65997504	+	0	NA	Intergenic	AluSz|SINE|Alu	-7738	NM_181656	284018	Hs.90790	NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
chr3.195498051.-	chr3	195498051	195498052	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40793	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr19.36843568.+	chr19	36843568	36843569	+	0	NA	"intron (NM_020917, intron 4 of 4)"	AluY|SINE|Alu	-20948	NR_038278	100506930	Hs.595153	NR_038278	ENSG00000232677	LINC00665	-	long intergenic non-protein coding RNA 665	miscRNA
chr11.113665989.-	chr11	113665989	113665990	-	0	NA	Intergenic	AluSx|SINE|Alu	-15471	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr15.77323435.-	chr15	77323435	77323436	-	0	NA	"intron (NM_003978, intron 9 of 14)"	"intron (NM_003978, intron 9 of 14)"	-35970	NM_003978	9051	Hs.129758	NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
chr12.2144278.-	chr12	2144278	2144279	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	18138	NM_001129831	775	Hs.118262	NM_000719		CACNA1C	CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS	"calcium channel, voltage-dependent, L type, alpha 1C subunit"	protein-coding
chrX.70493602.+	chrX	70493602	70493603	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9440	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr11.70049975.+	chr11	70049975	70049976	+	0	NA	"intron (NM_003824, intron 1 of 1)"	"intron (NM_003824, intron 1 of 1)"	706	NM_003824	8772	Hs.86131	NM_003824	ENSG00000168040	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
chr12.75694225.-	chr12	75694225	75694226	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29611	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr17.81083456.-	chr17	81083456	81083457	-	0	NA	Intergenic	CpG	-45889	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr12.122709758.+	chr12	122709758	122709759	+	0	NA	"intron (NR_024600, intron 2 of 6)"	AluSz|SINE|Alu	2310	NR_024601	56616	Hs.169611	NM_019887	ENSG00000184047	DIABLO	DFNA64|DIABLO-S|SMAC|SMAC3	"diablo, IAP-binding mitochondrial protein"	protein-coding
chr15.41539522.-	chr15	41539522	41539523	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16085	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chrX.46255724.-	chrX	46255724	46255725	-	0	NA	Intergenic	SVA_D|Other|Other	50900	NM_001129899	55634	Hs.632800	NM_001129898	ENSG00000147121	KRBOX4	ZNF673	KRAB box domain containing 4	protein-coding
chr5.77549713.-	chr5	77549713	77549714	-	0	NA	"intron (NM_001271769, intron 2 of 26)"	AluY|SINE|Alu	-40866	NM_003664	8546	Hs.532091	NM_001271769	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	"adaptor-related protein complex 3, beta 1 subunit"	protein-coding
chr7.36845285.-	chr7	36845285	36845286	-	0	NA	Intergenic	AluJb|SINE|Alu	81131	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr4.776612.-	chr4	776612	776613	-	0	NA	promoter-TSS (NR_036511)	promoter-TSS (NR_036511)	976	NR_036511	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	miscRNA
chr1.80177659.-	chr1	80177659	80177660	-	0	NA	Intergenic	AluSx|SINE|Alu	705164	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chrX.103014812.-	chrX	103014812	103014813	-	0	NA	Intergenic	AluY|SINE|Alu	16627	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr15.57668584.+	chr15	57668584	57668585	+	0	NA	promoter-TSS (NM_032866)	promoter-TSS (NM_032866)	-119	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr6.8388437.-	chr6	8388437	8388438	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47357	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chrX.133328807.-	chrX	133328807	133328808	-	0	NA	Intergenic	AluSg|SINE|Alu	24499	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr7.128142037.+	chr7	128142037	128142038	+	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	25254	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr13.46489305.-	chr13	46489305	46489306	-	0	NA	Intergenic	MER52D|LTR|ERV1	63459	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr1.24829829.+	chr1	24829829	24829830	+	0	NA	promoter-TSS (NR_045407)	promoter-TSS (NR_045407)	442	NM_001251981	11123	Hs.737226	NM_001251977	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
chr3.148709466.+	chr3	148709466	148709467	+	0	NA	"intron (NM_004130, intron 1 of 7)"	CpG	271	NM_004130	2992	Hs.477892	NM_001184720	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
chr16.1168139.+	chr16	1168139	1168140	+	0	NA	Intergenic	Intergenic	-21895	NM_207419	390664	Hs.527853	NM_207419		C1QTNF8	CTRP8|UNQ5829	C1q and tumor necrosis factor related protein 8	protein-coding
chr4.188471103.-	chr4	188471103	188471104	-	0	NA	Intergenic	AluSg|SINE|Alu	44336	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr8.49889237.-	chr8	49889237	49889238	-	0	NA	Intergenic	Intergenic	55238	NM_003068	6591	Hs.360174	NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH1|SNAIL2|WS2D	snail homolog 2 (Drosophila)	protein-coding
chr16.3733094.+	chr16	3733094	3733095	+	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	30154	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr9.38705471.-	chr9	38705471	38705472	-	0	NA	Intergenic	AluY|SINE|Alu	-84386	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr10.135192251.+	chr10	135192251	135192252	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-490	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr19.1725900.+	chr19	1725900	1725901	+	0	NA	Intergenic	CpG	-27762	NM_001080488	390874	Hs.654347	NM_001080488		ONECUT3	OC3	one cut homeobox 3	protein-coding
chr12.111714739.-	chr12	111714739	111714740	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92186	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr13.114932219.+	chr13	114932219	114932220	+	0	NA	Intergenic	Intergenic	-34124	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr10.102990024.-	chr10	102990024	102990025	-	0	NA	"intron (NR_029380, intron 1 of 2)"	CpG-3198	-673	NR_029380	399806	Hs.386143	NR_029380		FLJ41350	-	uncharacterized LOC399806	miscRNA
chr11.9243394.+	chr11	9243394	9243395	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43479	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr6.170055430.+	chr6	170055430	170055431	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46729	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chrX.152916390.+	chrX	152916390	152916391	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8493	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr5.179281160.+	chr5	179281160	179281161	+	0	NA	"intron (NM_001017987, intron 1 of 4)"	AluY|SINE|Alu	4680	NM_001017987	51149	Hs.741169	NM_001018061	ENSG00000161010	C5orf45	-	chromosome 5 open reading frame 45	protein-coding
chr2.230579916.+	chr2	230579916	230579917	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-630	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr2.42801294.-	chr2	42801294	42801295	-	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	-5623	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr14.55349973.-	chr14	55349973	55349974	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5062	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr1.6051316.+	chr1	6051316	6051317	+	0	NA	"intron (NM_015102, intron 1 of 29)"	"intron (NM_015102, intron 1 of 29)"	-1042	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr15.66993588.+	chr15	66993588	66993589	+	0	NA	Intergenic	CpG	-1086	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr8.22449335.-	chr8	22449335	22449336	-	0	NA	"intron (NM_176871, intron 8 of 9)"	"intron (NM_176871, intron 8 of 9)"	7779	NM_173686	541565	Hs.743508	NM_001013842	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
chr17.7549383.-	chr17	7549383	7549384	-	0	NA	Intergenic	AluSx1|SINE|Alu	4871	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr12.77273009.-	chr12	77273009	77273010	-	0	NA	promoter-TSS (NM_001321)	promoter-TSS (NM_001321)	210	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr5.1494504.+	chr5	1494504	1494505	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29572	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr21.43198273.+	chr21	43198273	43198274	+	0	NA	Intergenic	Intergenic	-11024	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr19.45324453.+	chr19	45324453	45324454	+	0	NA	"3' UTR (NM_005581, exon 15 of 15)"	"3' UTR (NM_005581, exon 15 of 15)"	12137	NM_001013257	4059	Hs.625725	NM_001013257	ENSG00000187244	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
chr10.76198271.+	chr10	76198271	76198272	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262024	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr1.97799060.-	chr1	97799060	97799061	-	0	NA	"intron (NM_000110, intron 16 of 22)"	"intron (NM_000110, intron 16 of 22)"	-237581	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr5.1883529.+	chr5	1883529	1883530	+	0	NA	promoter-TSS (NM_016358)	promoter-TSS (NM_016358)	-649	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr9.137722646.-	chr9	137722646	137722647	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18569	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr1.183308379.+	chr1	183308379	183308380	+	0	NA	"intron (NM_015039, intron 1 of 10)"	AluY|SINE|Alu	-34370	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr17.26220043.-	chr17	26220043	26220044	-	0	NA	"intron (NM_001076680, intron 1 of 3)"	CpG	-366	NM_001076680	201229	Hs.744052	NM_001076680		LYRM9	C17orf108	LYR motif containing 9	protein-coding
chr1.40953670.+	chr1	40953670	40953671	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10368	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr2.70199612.+	chr2	70199612	70199613	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10215	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr7.2297188.+	chr7	2297188	2297189	+	0	NA	"intron (NM_013321, intron 8 of 10)"	CpG-23885	14648	NM_198953	4521	Hs.534331	NM_002452	ENSG00000106268	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
chr4.1358102.+	chr4	1358102	1358103	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16998	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr11.74109373.+	chr11	74109373	74109374	+	0	NA	"5' UTR (NM_173582, exon 1 of 14)"	"5' UTR (NM_173582, exon 1 of 14)"	129	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr13.29913921.+	chr13	29913921	29913922	+	0	NA	"intron (NM_001033602, intron 5 of 13)"	CpG	-88856	NM_015233	23281	Hs.22287	NM_001033602		MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated tumor suppressor candidate 2	protein-coding
chr20.19987663.+	chr20	19987663	19987664	+	0	NA	Intergenic	AluY|SINE|Alu	-10271	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr1.110881111.-	chr1	110881111	110881112	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-682	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr19.10041347.-	chr19	10041347	10041348	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5723	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr11.45247610.+	chr11	45247610	45247611	+	0	NA	TTS (NR_046338)	TTS (NR_046338)	60274	NM_020826	57586	Hs.436643	NM_001247987	ENSG00000019505	SYT13	-	synaptotagmin XIII	protein-coding
chr19.21789930.+	chr19	21789930	21789931	+	0	NA	Intergenic	SVA_D|Other|Other	101493	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr5.72251523.-	chr5	72251523	72251524	-	0	NA	promoter-TSS (NM_138782)	promoter-TSS (NM_138782)	285	NM_001146032	115548	Hs.741336	NM_001146032	ENSG00000157107	FCHO2	-	FCH domain only 2	protein-coding
chr2.182902197.+	chr2	182902197	182902198	+	0	NA	"intron (NR_048566, intron 2 of 5)"	AluSc|SINE|Alu	51646	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	"protein phosphatase 1, regulatory (inhibitor) subunit 1C"	protein-coding
chr2.43990719.+	chr2	43990719	43990720	+	0	NA	"intron (NM_172069, intron 28 of 29)"	AluJb|SINE|Alu	-10459	NM_016008	51626	Hs.371597	NM_001012665	ENSG00000138036	DYNC2LI1	D2LIC|LIC3	"dynein, cytoplasmic 2, light intermediate chain 1"	protein-coding
chr9.8858132.-	chr9	8858132	8858133	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124186	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.17034285.+	chr1	17034285	17034286	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12367	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr8.125234432.-	chr8	125234432	125234433	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150508	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr16.1807984.-	chr16	1807984	1807985	-	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	-13726	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr18.20716074.-	chr18	20716074	20716075	-	0	NA	"exon (NM_001100619, exon 1 of 10)"	"exon (NM_001100619, exon 1 of 10)"	-347	NM_001100619	91768	Hs.11108	NM_001100619	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
chr14.104339675.-	chr14	104339675	104339676	-	0	NA	Intergenic	AluSz|SINE|Alu	-25617	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr5.178657977.+	chr5	178657977	178657978	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114454	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr2.234157312.-	chr2	234157312	234157313	-	0	NA	Intergenic	AluSx1|SINE|Alu	2905	NM_001190266	55054	Hs.529322	NM_001190266	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
chr9.117051586.+	chr9	117051586	117051587	+	0	NA	"intron (NM_032888, intron 45 of 60)"	"intron (NM_032888, intron 45 of 60)"	-33717	NM_000607	5004	Hs.522356	NM_000607	ENSG00000229314	ORM1	AGP-A|AGP1|ORM	orosomucoid 1	protein-coding
chr1.20126586.+	chr1	20126586	20126587	+	0	NA	promoter-TSS (NM_181719)	promoter-TSS (NM_181719)	-176	NM_181719	255104	Hs.656313	NM_181719	ENSG00000162542	TMCO4	RP5-1056L3.6	transmembrane and coiled-coil domains 4	protein-coding
chr12.118663792.+	chr12	118663792	118663793	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89922	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr16.84670309.-	chr16	84670309	84670310	-	0	NA	Intergenic	AluY|SINE|Alu	11822	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr6.138984644.-	chr6	138984644	138984645	-	0	NA	Intergenic	AluSp|SINE|Alu	28161	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr13.41885938.+	chr13	41885938	41885939	+	0	NA	"intron (NM_024561, intron 1 of 19)"	CpG	597	NM_001110798	79612	Hs.512914	NM_001110798	ENSG00000172766	NAA16	NARG1L	"N(alpha)-acetyltransferase 16, NatA auxiliary subunit"	protein-coding
chr13.111268299.+	chr13	111268299	111268300	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	368	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr6.91006361.-	chr6	91006361	91006362	-	0	NA	"5' UTR (NM_021813, exon 1 of 9)"	"5' UTR (NM_021813, exon 1 of 9)"	-201	NM_021813	60468	Hs.269764	NM_001170794	ENSG00000112182	BACH2	BTBD25	"BTB and CNC homology 1, basic leucine zipper transcription factor 2"	protein-coding
chr5.17924816.+	chr5	17924816	17924817	+	0	NA	Intergenic	AluY|SINE|Alu	-537397	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr7.5396367.+	chr7	5396367	5396368	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66810	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr19.51143330.-	chr19	51143330	51143331	-	0	NA	promoter-TSS (NM_001160329)	promoter-TSS (NM_001160329)	238	NM_001160329	84258	Hs.515554	NM_001160328	ENSG00000213023	SYT3	SytIII	synaptotagmin III	protein-coding
chr2.213546695.+	chr2	213546695	213546696	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143343	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr9.141042273.-	chr9	141042273	141042274	-	0	NA	Intergenic	CpG	2292	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr17.78075295.-	chr17	78075295	78075296	-	0	NA	promoter-TSS (NM_000152)	promoter-TSS (NM_000152)	60	NM_001079804	2548	Hs.1437	NM_000152	ENSG00000171298	GAA	LYAG	"glucosidase, alpha; acid"	protein-coding
chr17.80050132.+	chr17	80050132	80050133	+	0	NA	"intron (NM_004104, intron 8 of 42)"	"intron (NM_004104, intron 8 of 42)"	5974	NM_004104	2194	Hs.83190	NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
chr17.44132731.-	chr17	44132731	44132732	-	0	NA	"intron (NM_001193465, intron 7 of 15).2"	AluSq2|SINE|Alu	-56115	NM_001007532	246744	Hs.661831	NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
chr1.8021830.+	chr1	8021830	8021831	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	116	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr2.43253930.+	chr2	43253930	43253931	+	0	NA	Intergenic	Intergenic	199815	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr2.173941043.+	chr2	173941043	173941044	+	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	478	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr18.29434829.+	chr18	29434829	29434830	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88262	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr8.101661659.+	chr8	101661659	101661660	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	234	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr6.167607656.-	chr6	167607656	167607657	-	0	NA	Intergenic	Intergenic	-23575	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr11.44361790.-	chr11	44361790	44361791	-	0	NA	Intergenic	AluJb|SINE|Alu	30074	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr19.20713417.+	chr19	20713417	20713418	+	0	NA	Intergenic	SVA_D|Other|Other	35209	NM_001159293	100129842	Hs.515696	NM_001159293		ZNF737	ZNF102	zinc finger protein 737	protein-coding
chr17.59482737.-	chr17	59482737	59482738	-	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	-5480	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr13.66584775.+	chr13	66584775	66584776	+	0	NA	Intergenic	AluY|SINE|Alu	-814526	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr20.39978514.-	chr20	39978514	39978515	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8954	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr22.24621464.+	chr22	24621464	24621465	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19646	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr19.18416241.-	chr19	18416241	18416242	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17760	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr1.182583555.-	chr1	182583555	182583556	-	0	NA	promoter-TSS (NR_036490)	promoter-TSS (NR_036490)	720	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LOC284648	-	uncharacterized LOC284648	miscRNA
chr16.12223889.-	chr16	12223889	12223890	-	0	NA	"intron (NM_032167, intron 13 of 20)"	AluSc8|SINE|Alu	-153287	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr8.27509116.-	chr8	27509116	27509117	-	0	NA	"exon (NM_182826, exon 3 of 6)"	"exon (NM_182826, exon 3 of 6)"	-17539	NM_016240	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	"scavenger receptor class A, member 3"	protein-coding
chr14.23845014.-	chr14	23845014	23845015	-	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	1003	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr6.56407852.+	chr6	56407852	56407853	+	0	NA	"intron (NM_001144769, intron 55 of 96)"	CpG	99842	NM_015548	667	Hs.735651	XM_003403438	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|HSAN6|MACF2	dystonin	protein-coding
chr7.66480074.+	chr7	66480074	66480075	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18282	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr3.98624724.+	chr3	98624724	98624725	+	0	NA	Intergenic	AluY|SINE|Alu	-4191	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr2.21484565.-	chr2	21484565	21484566	-	0	NA	Intergenic	Intergenic	217620	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr22.23792627.-	chr22	23792627	23792628	-	0	NA	Intergenic	Intergenic	47828	NR_003950	150244	Hs.386693	NM_152509		ZDHHC8P1	ZDHHC8P	"zinc finger, DHHC-type containing 8 pseudogene 1"	pseudo
chr17.18179044.+	chr17	18179044	18179045	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14620	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr11.34488078.+	chr11	34488078	34488079	+	0	NA	"intron (NM_001752, intron 10 of 12)"	AluY|SINE|Alu	27606	NM_001752	847	Hs.502302	NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
chr17.4697383.+	chr17	4697383	4697384	+	0	NA	Intergenic	AluY|SINE|Alu	-2056	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr19.45406772.+	chr19	45406772	45406773	+	0	NA	"3' UTR (NM_001128916, exon 10 of 10)"	"3' UTR (NM_001128916, exon 10 of 10)"	-2267	NM_000041	348	Hs.654439	NM_000041	ENSG00000130203	APOE	AD2|LDLCQ5|LPG	apolipoprotein E	protein-coding
chr3.36494762.-	chr3	36494762	36494763	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72665	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr9.100747353.+	chr9	100747353	100747354	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1864	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr5.159429727.+	chr5	159429727	159429728	+	0	NA	Intergenic	AluSz|SINE|Alu	-6453	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr20.31565639.+	chr20	31565639	31565640	+	0	NA	Intergenic	Intergenic	26600	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr16.1419531.+	chr16	1419531	1419532	+	0	NA	"intron (NM_001193388, intron 12 of 14)"	AluSp|SINE|Alu	10153	NM_001276414	64718	Hs.643536	NM_001037125	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unkempt homolog (Drosophila)-like	protein-coding
chr7.56143777.-	chr7	56143777	56143778	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11860	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr12.132313102.+	chr12	132313102	132313103	+	0	NA	"exon (NM_016155, exon 1 of 10)"	"exon (NM_016155, exon 1 of 10)"	161	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr12.77339538.-	chr12	77339538	77339539	-	0	NA	Intergenic	AluY|SINE|Alu	66739	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr17.68536085.+	chr17	68536085	68536086	+	0	NA	Intergenic	AluSx3|SINE|Alu	370409	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	"potassium inwardly-rectifying channel, subfamily J, member 2"	protein-coding
chr3.13590853.-	chr3	13590853	13590854	-	0	NA	"intron (NM_001998, intron 1 of 16)"	CpG	-228	NM_001004019	2199	Hs.198862	NM_001004019	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
chr7.156795118.+	chr7	156795118	156795119	+	0	NA	Intergenic	Intergenic	7011	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr2.21484728.+	chr2	21484728	21484729	+	0	NA	Intergenic	Intergenic	-217783	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr7.149504168.-	chr7	149504168	149504169	-	0	NA	"intron (NM_198455, intron 60 of 109)"	"intron (NM_198455, intron 60 of 109)"	-31037	NM_198455	23145	Hs.632022	NM_198455		SSPO	SCO-spondin	SCO-spondin homolog (Bos taurus)	protein-coding
chr1.40330241.-	chr1	40330241	40330242	-	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	-18936	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr9.14830729.-	chr9	14830729	14830730	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51198	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr12.50448268.-	chr12	50448268	50448269	-	0	NA	Intergenic	AluSx|SINE|Alu	3152	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr7.23338915.-	chr7	23338915	23338916	-	0	NA	promoter-TSS (NM_138446)	promoter-TSS (NM_138446)	25	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30	mitochondrial assembly of ribosomal large subunit 1	protein-coding
chr16.30419108.+	chr16	30419108	30419109	+	0	NA	"intron (NM_001142305, intron 1 of 2)"	CpG	373	NM_016643	51333	Hs.148584	NM_001142305	ENSG00000179965	ZNF771	DSC43	zinc finger protein 771	protein-coding
chr12.34500230.-	chr12	34500230	34500231	-	0	NA	Intergenic	Intergenic	-325014	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.22207047.-	chr5	22207047	22207048	-	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	-64586	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr8.111696904.-	chr8	111696904	111696905	-	0	NA	Intergenic	AluY|SINE|Alu	709945	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr3.42630507.+	chr3	42630507	42630508	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1791	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr16.1845126.-	chr16	1845126	1845127	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	217	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.5570038.+	chr7	5570038	5570039	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	194	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr14.36549611.-	chr14	36549611	36549612	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9978	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr17.46186988.-	chr17	46186988	46186989	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2041	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr9.74464956.-	chr9	74464956	74464957	-	0	NA	Intergenic	AluY|SINE|Alu	-61192	NM_001025780	51104	Hs.380389	NM_001025780	ENSG00000107362	ABHD17B	C9orf77|FAM108B1|RP11-409O11.2	abhydrolase domain containing 17B	protein-coding
chr19.57148750.-	chr19	57148750	57148751	-	0	NA	Intergenic	AluY|SINE|Alu	5777	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
chr5.25101118.+	chr5	25101118	25101119	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-260426	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr13.111268062.+	chr13	111268062	111268063	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	131	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr12.113725955.+	chr12	113725955	113725956	+	0	NA	"intron (NM_001143819, intron 20 of 28)"	"intron (NM_001143819, intron 20 of 28)"	46970	NM_024959	80024	Hs.286194	NM_024959	ENSG00000089060	SLC24A6	NCKX6|NCLX	"solute carrier family 24 (sodium/lithium/calcium exchanger), member 6"	protein-coding
chr17.79868716.-	chr17	79868716	79868717	-	0	NA	"intron (NM_001184917, intron 1 of 13)"	CpG	-361	NR_033685	5833	Hs.569843	NM_001184917		PCYT2	ET	"phosphate cytidylyltransferase 2, ethanolamine"	protein-coding
chr9.26820718.+	chr9	26820718	26820719	+	0	NA	Intergenic	AluY|SINE|Alu	72108	NM_024828	79886	Hs.178357	NM_001167575	ENSG00000120159	CAAP1	C9orf82|CAAP|RP11-337A23.1	caspase activity and apoptosis inhibitor 1	protein-coding
chr3.47411289.-	chr3	47411289	47411290	-	0	NA	Intergenic	AluSq|SINE|Alu	11202	NM_015466	25930	Hs.25524	NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|PTP-TD14	"protein tyrosine phosphatase, non-receptor type 23"	protein-coding
chr22.44845317.+	chr22	44845317	44845318	+	0	NA	Intergenic	Intergenic	48688	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr11.111190868.+	chr11	111190868	111190869	+	0	NA	Intergenic	AluYa5|SINE|Alu	-20329	NR_034154	399948	Hs.729225	NM_207429	ENSG00000196167	C11orf92	-	chromosome 11 open reading frame 92	miscRNA
chr2.61701828.-	chr2	61701828	61701829	-	0	NA	Intergenic	AluSg|SINE|Alu	3979	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr19.58250039.+	chr19	58250039	58250040	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8125	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr11.70675091.+	chr11	70675091	70675092	+	0	NA	"intron (NM_012309, intron 8 of 22)"	"intron (NM_012309, intron 8 of 22)"	-33804	NR_073536	220070	Hs.326766	XR_110890	ENSG00000171671	SHANK2-AS3	C11orf76	SHANK2 antisense RNA 3	miscRNA
chr6.45365104.-	chr6	45365104	45365105	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19316	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr10.125955485.-	chr10	125955485	125955486	-	0	NA	Intergenic	LTR16E1|LTR|ERVL	102362	NM_001270764	51363	Hs.731394	NM_001270764	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST|RP11-47G11.1	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
chr2.114361278.+	chr2	114361278	114361279	+	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	16	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr2.43254041.+	chr2	43254041	43254042	+	0	NA	Intergenic	Intergenic	199704	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr6.160426416.+	chr6	160426416	160426417	+	0	NA	"non-coding (NR_047514, exon 1 of 1)"	"non-coding (NR_047514, exon 1 of 1)"	2280	NR_047514	100271873	Hs.742166	NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	miscRNA
chr11.31337010.-	chr11	31337010	31337011	-	0	NA	"intron (NM_181807, intron 3 of 8)"	AluY|SINE|Alu	-54347	NM_181807	341019	Hs.592000	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
chr10.69822238.-	chr10	69822238	69822239	-	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	-12865	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr17.46186999.-	chr17	46186999	46187000	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2052	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr14.105953493.-	chr14	105953493	105953494	-	0	NA	"intron (NM_001311, intron 1 of 5)"	CpG	-236	NM_001311	1396	Hs.70327	NM_001311	ENSG00000213145	CRIP1	CRHP|CRIP|CRP-1|CRP1	cysteine-rich protein 1 (intestinal)	protein-coding
chr7.1474497.+	chr7	1474497	1474498	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24612	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr9.127626613.+	chr9	127626613	127626614	+	0	NA	Intergenic	AluSx|SINE|Alu	-2373	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr14.23706413.-	chr14	23706413	23706414	-	0	NA	Intergenic	AluSz|SINE|Alu	-48896	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr7.33164259.-	chr7	33164259	33164260	-	0	NA	Intergenic	AluYf5|SINE|Alu	4893	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr7.63583189.-	chr7	63583189	63583190	-	0	NA	Intergenic	AluSg|SINE|Alu	-77368	NM_001159522	442319	Hs.640774	NM_001159522	ENSG00000257482	ZNF727	-	zinc finger protein 727	protein-coding
chr19.1252664.+	chr19	1252664	1252665	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4112	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr12.108523334.-	chr12	108523334	108523335	-	0	NA	promoter-TSS (NM_014653)	promoter-TSS (NM_014653)	177	NM_014653	9671	Hs.143591	NM_014653	ENSG00000075035	WSCD2	-	WSC domain containing 2	protein-coding
chr17.65843605.-	chr17	65843605	65843606	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21825	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr4.38203601.+	chr4	38203601	38203602	+	0	NA	Intergenic	AluSg|SINE|Alu	82026	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr7.56143788.+	chr7	56143788	56143789	+	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	11871	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chrX.152916354.-	chrX	152916354	152916355	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8457	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr15.93372463.-	chr15	93372463	93372464	-	0	NA	Intergenic	AluSg|SINE|Alu	-33749	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr9.3470476.-	chr9	3470476	3470477	-	0	NA	"intron (NM_134428, intron 2 of 17)"	AluY|SINE|Alu	-55507	NM_134428	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	bA32F11.1	"regulatory factor X, 3 (influences HLA class II expression)"	protein-coding
chr15.83365900.-	chr15	83365900	83365901	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12735	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr17.749069.-	chr17	749069	749070	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSg|SINE|Alu	-18282	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chrX.68956159.+	chrX	68956159	68956160	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	L1MEf|LINE|L1	120248	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr17.50235678.-	chr17	50235678	50235679	-	0	NA	"5' UTR (NM_001082534, exon 2 of 10)"	"5' UTR (NM_001082534, exon 2 of 10)"	-454	NM_020178	56934	Hs.463466	NM_001082533	ENSG00000154975	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase X	protein-coding
chr12.84854409.-	chr12	84854409	84854410	-	0	NA	Intergenic	AluY|SINE|Alu	-452199	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr7.2943500.+	chr7	2943500	2943501	+	0	NA	Intergenic	Intergenic	-59541	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr9.135947038.-	chr9	135947038	135947039	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9673	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr17.57645277.-	chr17	57645277	57645278	-	0	NA	"intron (NM_024612, intron 2 of 17)"	AluY|SINE|Alu	-2391	NM_024612	79665	Hs.29403	XM_003846599	ENSG00000108406	DHX40	DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding
chr11.17160754.-	chr11	17160754	17160755	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSq10|SINE|Alu	-30600	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr9.8857416.-	chr9	8857416	8857417	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123470	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr11.134211990.-	chr11	134211990	134211991	-	0	NA	"intron (NM_138342, intron 1 of 19)"	CpG	-10222	NM_138342	89944	Hs.436178	NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	"galactosidase, beta 1-like 2"	protein-coding
chr1.161879475.+	chr1	161879475	161879476	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114169	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr9.14830626.+	chr9	14830626	14830627	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51095	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr9.128986127.-	chr9	128986127	128986128	-	0	NA	Intergenic	Intergenic	102996	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr2.95831501.+	chr2	95831501	95831502	+	0	NA	"5' UTR (NM_001017396, exon 1 of 4)"	"5' UTR (NM_001017396, exon 1 of 4)"	318	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr7.56888239.+	chr7	56888239	56888240	+	0	NA	Intergenic	Intergenic	61600	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr1.228134601.+	chr1	228134601	228134602	+	0	NA	"intron (NM_003395, intron 1 of 3)"	CpG	1075	NM_003395	7483	Hs.149504	NM_003395		WNT9A	WNT14	"wingless-type MMTV integration site family, member 9A"	protein-coding
chr7.21370287.-	chr7	21370287	21370288	-	0	NA	Intergenic	MER52D|LTR|ERV1	97402	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr5.36143014.-	chr5	36143014	36143015	-	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	-5076	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr21.37627684.+	chr21	37627684	37627685	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64803	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr1.248020518.-	chr1	248020518	248020519	-	0	NA	promoter-TSS (NM_015431)	promoter-TSS (NM_015431)	-17	NM_015431	25893	Hs.269151	NM_015431		TRIM58	BIA2	tripartite motif containing 58	protein-coding
chr1.55505438.-	chr1	55505438	55505439	-	0	NA	"5' UTR (NM_174936, exon 1 of 12)"	"5' UTR (NM_174936, exon 1 of 12)"	-289	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr9.88837131.+	chr9	88837131	88837132	+	0	NA	"intron (NM_001276368, intron 4 of 4)"	"intron (NM_001276368, intron 4 of 4)"	33817	NM_001276368	389766	Hs.632073	NM_001010907	ENSG00000187753	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
chrM.15610.-	chrM	15610	15611	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.88117994.+	chr6	88117994	88117995	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	304	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr1.24513579.-	chr1	24513579	24513580	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-186	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr19.33372526.-	chr19	33372526	33372527	-	0	NA	"intron (NM_032816, intron 18 of 18)"	"intron (NM_032816, intron 18 of 18)"	11843	NM_014270	11136	Hs.743345	NM_001126335	ENSG00000021488	SLC7A9	BAT1|CSNU3	"solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9"	protein-coding
chr12.113952678.-	chr12	113952678	113952679	-	0	NA	Intergenic	Intergenic	42801	NM_022363	64211	Hs.302029	NM_022363		LHX5	-	LIM homeobox 5	protein-coding
chr4.92938321.+	chr4	92938321	92938322	+	0	NA	Intergenic	AluY|SINE|Alu	-287229	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr8.26486345.+	chr8	26486345	26486346	+	0	NA	"intron (NM_001244604, intron 7 of 13)"	"intron (NM_001244604, intron 7 of 13)"	50424	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr8.19626663.-	chr8	19626663	19626664	-	0	NA	Intergenic	AluSx1|SINE|Alu	48255	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr21.46383154.+	chr21	46383154	46383155	+	0	NA	"intron (NM_058190, intron 3 of 5)"	AluY|SINE|Alu	23199	NM_058190	85395	Hs.410830	NM_058190	ENSG00000160256	FAM207A	C21orf70	"family with sequence similarity 207, member A"	protein-coding
chr12.133341620.-	chr12	133341620	133341621	-	0	NA	Intergenic	AluY|SINE|Alu	3169	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr6.165953259.-	chr6	165953259	165953260	-	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	-122329	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr1.114299620.+	chr1	114299620	114299621	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2157	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr6.2221769.+	chr6	2221769	2221770	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24099	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr5.1201351.+	chr5	1201351	1201352	+	0	NA	promoter-TSS (NM_001003841)	promoter-TSS (NM_001003841)	-359	NM_001003841	340024	Hs.481478	NM_001003841	ENSG00000174358	SLC6A19	B0AT1|HND	"solute carrier family 6 (neutral amino acid transporter), member 19"	protein-coding
chr16.30960867.-	chr16	30960867	30960868	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-462	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr1.8021842.+	chr1	8021842	8021843	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	128	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr22.50876256.+	chr22	50876256	50876257	+	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	37208	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr9.135947025.-	chr9	135947025	135947026	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9660	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr6.151727612.-	chr6	151727612	151727613	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14935	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chrX.113575467.+	chrX	113575467	113575468	+	0	NA	Intergenic	AluJb|SINE|Alu	-243084	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr16.4537726.-	chr16	4537726	4537727	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8133	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr12.132623237.+	chr12	132623237	132623238	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5643	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr18.43723393.+	chr18	43723393	43723394	+	0	NA	Intergenic	AluY|SINE|Alu	-30595	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr10.118500976.+	chr10	118500976	118500977	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1109	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr7.158165318.+	chr7	158165318	158165319	+	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	160187	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr11.65359735.+	chr11	65359735	65359736	+	0	NA	TTS (NM_033347)	TTS (NM_033347)	3732	NM_033455	10089	Hs.175218	NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	"potassium channel, subfamily K, member 7"	protein-coding
chr15.43777675.-	chr15	43777675	43777676	-	0	NA	"intron (NM_001141979, intron 4 of 27)"	AluY|SINE|Alu	-7679	NM_001141980	7158	Hs.440968	NM_001141979	ENSG00000067369	TP53BP1	53BP1|p202	tumor protein p53 binding protein 1	protein-coding
chr20.3776737.-	chr20	3776737	3776738	-	0	NA	"5' UTR (NM_004358, exon 1 of 16)"	"5' UTR (NM_004358, exon 1 of 16)"	-336	NM_021872	994	Hs.153752	NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
chr10.28763756.-	chr10	28763756	28763757	-	0	NA	Intergenic	AluYc|SINE|Alu	-57527	NR_033805	220906	Hs.403253	NR_033805		WAC-AS1	-	WAC antisense RNA 1 (head to head)	miscRNA
chr12.34501154.+	chr12	34501154	34501155	+	0	NA	Intergenic	GSATII|Satellite|centr	325938	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr7.1592448.-	chr7	1592448	1592449	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	AluSx1|SINE|Alu	-3618	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr17.18179048.+	chr17	18179048	18179049	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14624	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr10.76620823.-	chr10	76620823	76620824	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34652	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr6.166934787.-	chr6	166934787	166934788	-	0	NA	"intron (NM_001006932, intron 4 of 21)"	"intron (NM_001006932, intron 4 of 21)"	11866	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	miscRNA
chr14.23526816.+	chr14	23526816	23526817	+	0	NA	promoter-TSS (NM_022478)	promoter-TSS (NM_022478)	-69	NM_022478	64403	Hs.155912	NM_022478	ENSG00000139880	CDH24	CDH11L	"cadherin 24, type 2"	protein-coding
chr5.25468633.-	chr5	25468633	25468634	-	0	NA	Intergenic	AluY|SINE|Alu	627941	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chrX.103014811.+	chrX	103014811	103014812	+	0	NA	Intergenic	AluY|SINE|Alu	-16628	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr9.28773085.+	chr9	28773085	28773086	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53782	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr16.31103097.-	chr16	31103097	31103098	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	2967	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr19.13741952.-	chr19	13741952	13741953	-	0	NA	Intergenic	AluSc8|SINE|Alu	116801	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr3.52030344.+	chr3	52030344	52030345	+	0	NA	promoter-TSS (NM_000992)	promoter-TSS (NM_000992)	-386	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
chr19.18057765.-	chr19	18057765	18057766	-	0	NA	Intergenic	AluSx|SINE|Alu	4346	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr8.30533873.-	chr8	30533873	30533874	-	0	NA	Intergenic	AluY|SINE|Alu	18135	NM_002095	2961	Hs.77100	NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B	"general transcription factor IIE, polypeptide 2, beta 34kDa"	protein-coding
chr20.61021245.-	chr20	61021245	61021246	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18616	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr19.34940116.+	chr19	34940116	34940117	+	0	NA	"intron (NM_005499, intron 8 of 16)"	AluSc|SINE|Alu	20848	NM_005499	10054	Hs.631580	NM_005499	ENSG00000126261	UBA2	ARX|SAE2	ubiquitin-like modifier activating enzyme 2	protein-coding
chr18.74140073.-	chr18	74140073	74140074	-	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	-67073	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr6.34857469.+	chr6	34857469	34857470	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	431	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr17.4708648.+	chr17	4708648	4708649	+	0	NA	Intergenic	AluSp|SINE|Alu	-1748	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr11.66224184.-	chr11	66224184	66224185	-	0	NA	Intergenic	AluY|SINE|Alu	9614	NM_001243135	246330	Hs.656875	NM_001098510	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
chr20.50589995.-	chr20	50589995	50589996	-	0	NA	Intergenic	AluSc|SINE|Alu	170947	NM_020436	57167	Hs.517113	NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|ZNF797|dJ1112F19.1	sal-like 4 (Drosophila)	protein-coding
chr7.40947903.-	chr7	40947903	40947904	-	0	NA	Intergenic	AluY|SINE|Alu	-773328	NM_001193312	79783	Hs.586313	NM_001193311	ENSG00000175600	C7orf10	DERP13|ORF19	chromosome 7 open reading frame 10	protein-coding
chr11.70049214.-	chr11	70049214	70049215	-	0	NA	promoter-TSS (NM_003824)	promoter-TSS (NM_003824)	55	NM_003824	8772	Hs.86131	NM_003824	ENSG00000168040	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
chr2.10424725.-	chr2	10424725	10424726	-	0	NA	Intergenic	Intergenic	18305	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr9.120507374.+	chr9	120507374	120507375	+	0	NA	Intergenic	CpG	40921	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr15.63892583.-	chr15	63892583	63892584	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-443	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr5.57859834.+	chr5	57859834	57859835	+	0	NA	Intergenic	SVA_A|Other|Other	-19105	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr22.46522738.+	chr22	46522738	46522739	+	0	NA	Intergenic	Intergenic	13172	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr3.129670171.+	chr3	129670171	129670172	+	0	NA	Intergenic	Intergenic	-22943	NM_007117	7200	Hs.732877	NM_007117	ENSG00000170893	TRH	-	thyrotropin-releasing hormone	protein-coding
chr19.56989332.+	chr19	56989332	56989333	+	0	NA	promoter-TSS (NR_036522)	promoter-TSS (NR_036522)	89	NR_036521	100128252	Hs.23133	NM_198879	ENSG00000166770	LOC100128252	-	uncharacterized LOC100128252	miscRNA
chr7.532219.+	chr7	532219	532220	+	0	NA	Intergenic	Intergenic	27262	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr2.232277202.-	chr2	232277202	232277203	-	0	NA	Intergenic	Intergenic	-16867	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr17.48631022.+	chr17	48631022	48631023	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6572	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr2.101214323.-	chr2	101214323	101214324	-	0	NA	Intergenic	AluY|SINE|Alu	-34905	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr1.2157711.-	chr1	2157711	2157712	-	0	NA	Intergenic	AluJb|SINE|Alu	2423	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr19.38755102.-	chr19	38755102	38755103	-	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	-4	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr10.120966479.-	chr10	120966479	120966480	-	0	NA	promoter-TSS (NM_005308)	promoter-TSS (NM_005308)	718	NM_005308	2869	Hs.736460	NM_005308	ENSG00000198873	GRK5	GPRK5	G protein-coupled receptor kinase 5	protein-coding
chr1.40330212.+	chr1	40330212	40330213	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18965	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr9.12352785.+	chr9	12352785	12352786	+	0	NA	Intergenic	AluY|SINE|Alu	-340601	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chrX.53123428.+	chrX	53123428	53123429	+	0	NA	Intergenic	CpG	11886	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.38829849.+	chr9	38829849	38829850	+	0	NA	Intergenic	AluY|SINE|Alu	208764	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr2.174289338.+	chr2	174289338	174289339	+	0	NA	Intergenic	AluSx|SINE|Alu	69777	NM_145810	83879	Hs.470654	NM_031942	ENSG00000144354	CDCA7	JPO1	cell division cycle associated 7	protein-coding
chrX.118871986.+	chrX	118871986	118871987	+	0	NA	Intergenic	AluYc|SINE|Alu	-20590	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr14.21741101.-	chr14	21741101	21741102	-	0	NA	Intergenic	AluSx1|SINE|Alu	3463	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr11.73020393.-	chr11	73020393	73020394	-	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	-730	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr5.91333150.-	chr5	91333150	91333151	-	0	NA	Intergenic	AluY|SINE|Alu	654001	NM_020801	57561	Hs.24684	NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
chr19.45324454.+	chr19	45324454	45324455	+	0	NA	"3' UTR (NM_005581, exon 15 of 15)"	"3' UTR (NM_005581, exon 15 of 15)"	12138	NM_001013257	4059	Hs.625725	NM_001013257	ENSG00000187244	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
chr10.8092193.+	chr10	8092193	8092194	+	0	NA	TTS (NR_024256)	TTS (NR_024256)	3254	NR_024255	399717	Hs.669736	NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	miscRNA
chr2.58008303.+	chr2	58008303	58008304	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265474	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr7.810985.-	chr7	810985	810986	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43672	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr5.14460496.-	chr5	14460496	14460497	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121395	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr11.69451957.-	chr11	69451957	69451958	-	0	NA	Intergenic	CpG	3916	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr17.73615661.-	chr17	73615661	73615662	-	0	NA	"intron (NR_003587, intron 43 of 60)"	"intron (NR_003587, intron 43 of 60)"	13853	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr13.77954555.-	chr13	77954555	77954556	-	0	NA	Intergenic	AluSc|SINE|Alu	53378	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr11.16894113.-	chr11	16894113	16894114	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133965	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr21.31311498.-	chr21	31311498	31311499	-	0	NA	"intron (NM_175611, intron 1 of 15)"	CpG	-784	NM_000830	2897	Hs.664641	NM_000830	ENSG00000171189	GRIK1	EAA3|EEA3|GLR5|GLUR5|GluK1	"glutamate receptor, ionotropic, kainate 1"	protein-coding
chr3.133504048.-	chr3	133504048	133504049	-	0	NA	"intron (NM_021203, intron 1 of 7)"	SVA_F|Other|Other	-1171	NM_021203	58477	Hs.12152	NM_021203		SRPRB	APMCF1	"signal recognition particle receptor, B subunit"	protein-coding
chr13.23356652.-	chr13	23356652	23356653	-	0	NA	Intergenic	AluY|SINE|Alu	-115668	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	"brain abundant, membrane attached signal protein 1 pseudogene 1"	pseudo
chrM.9322.+	chrM	9322	9323	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.85371272.+	chr16	85371272	85371273	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-31341	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr20.60559786.+	chr20	60559786	60559787	+	0	NA	"intron (NM_003185, intron 14 of 14)"	"intron (NM_003185, intron 14 of 14)"	-31068	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr20.13660625.-	chr20	13660625	13660626	-	0	NA	Intergenic	AluY|SINE|Alu	41042	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr12.114028993.-	chr12	114028993	114028994	-	0	NA	Intergenic	AluY|SINE|Alu	119116	NM_022363	64211	Hs.302029	NM_022363		LHX5	-	LIM homeobox 5	protein-coding
chr1.11960074.-	chr1	11960074	11960075	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26411	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
chr17.43255869.+	chr17	43255869	43255870	+	0	NA	Intergenic	AluY|SINE|Alu	17605	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chrX.7012500.+	chrX	7012500	7012501	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53401	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr17.79791688.+	chr17	79791688	79791689	+	0	NA	promoter-TSS (NM_001093767)	promoter-TSS (NM_001093767)	-521	NM_207368	348262	Hs.514632	NM_001093767	ENSG00000225663	FAM195B	-	"family with sequence similarity 195, member B"	protein-coding
chr2.240401991.-	chr2	240401991	240401992	-	0	NA	Intergenic	Intergenic	79348	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.26387249.+	chr9	26387249	26387250	+	0	NA	Intergenic	AluY|SINE|Alu	320576	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr4.26862475.-	chr4	26862475	26862476	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-162	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr2.32250714.-	chr2	32250714	32250715	-	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	-14130	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr16.4997653.-	chr16	4997653	4997654	-	0	NA	Intergenic	Intergenic	10517	NM_002705	5493	Hs.192233	NM_002705	ENSG00000118898	PPL	-	periplakin	protein-coding
chr5.1137816.-	chr5	1137816	1137817	-	0	NA	Intergenic	Intergenic	25644	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr17.20946136.-	chr17	20946136	20946137	-	0	NA	"exon (NM_015276, exon 1 of 13)"	"exon (NM_015276, exon 1 of 13)"	-216	NM_015276	23326	Hs.462492	NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
chr19.40938973.+	chr19	40938973	40938974	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7041	NM_013376	29950	Hs.269898	NM_013376		SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding
chr2.239058210.+	chr2	239058210	239058211	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10847	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr5.108146224.+	chr5	108146224	108146225	+	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	62701	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chrX.47334434.-	chrX	47334434	47334435	-	0	NA	"intron (NM_153380, intron 1 of 4)"	AluYk12|SINE|Alu	-7911	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr5.855262.-	chr5	855262	855263	-	0	NA	Intergenic	Intergenic	4161	NM_024786	79844	Hs.732788	NM_024786	ENSG00000188818	ZDHHC11	ZNF399	"zinc finger, DHHC-type containing 11"	protein-coding
chr16.22879713.-	chr16	22879713	22879714	-	0	NA	"intron (NM_006043, intron 1 of 1)"	AluSc|SINE|Alu	-53853	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr13.29293200.-	chr13	29293200	29293201	-	0	NA	promoter-TSS (NM_181785)	promoter-TSS (NM_181785)	50	NM_181785	283537	Hs.117167	NM_001135919	ENSG00000139508	SLC46A3	FKSG16	"solute carrier family 46, member 3"	protein-coding
chr10.133869134.-	chr10	133869134	133869135	-	0	NA	Intergenic	Intergenic	49179	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr3.47411318.-	chr3	47411318	47411319	-	0	NA	Intergenic	AluSq|SINE|Alu	11173	NM_015466	25930	Hs.25524	NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|PTP-TD14	"protein tyrosine phosphatase, non-receptor type 23"	protein-coding
chr13.110551486.-	chr13	110551486	110551487	-	0	NA	Intergenic	AluSx|SINE|Alu	112572	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr9.123743159.+	chr9	123743159	123743160	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51708	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr20.32469511.-	chr20	32469511	32469512	-	0	NA	Intergenic	AluSp|SINE|Alu	-70401	NM_176812	128866	Hs.472471	NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
chr16.1228067.+	chr16	1228067	1228068	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24826	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr22.38530993.+	chr22	38530993	38530994	+	0	NA	"intron (NM_001004426, intron 6 of 15)"	"intron (NM_001004426, intron 6 of 15)"	-24317	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr19.2340028.-	chr19	2340028	2340029	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11399	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr5.2860488.-	chr5	2860488	2860489	-	0	NA	Intergenic	Intergenic	-108226	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr16.31449006.+	chr16	31449006	31449007	+	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	5342	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr9.139737178.+	chr9	139737178	139737179	+	0	NA	Intergenic	(CAAGG)n|Simple_repeat|Simple_repeat	-1689	NM_001080482	389813	Hs.495485	NM_001080482	ENSG00000232434	C9orf172	-	chromosome 9 open reading frame 172	protein-coding
chr20.30161032.+	chr20	30161032	30161033	+	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	34	NR_046853	100874042	Hs.743198	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	miscRNA
chr10.45240273.-	chr10	45240273	45240274	-	0	NA	Intergenic	AluSx1|SINE|Alu	166491	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr13.99373168.-	chr13	99373168	99373169	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31761	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr2.35387159.-	chr2	35387159	35387160	-	0	NA	Intergenic	AluY|SINE|Alu	-1195554	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr4.17513843.-	chr4	17513843	17513844	-	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	-14	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr5.137827753.+	chr5	137827753	137827754	+	0	NA	Intergenic	CpG	26572	NM_001964	1958	Hs.708393	NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
chr17.47754948.-	chr17	47754948	47754949	-	0	NA	"intron (NM_001007226, intron 1 of 11)"	CpG	-577	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr1.183257549.+	chr1	183257549	183257550	+	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	16460	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr2.233477502.+	chr2	233477502	233477503	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6735	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr6.5004218.-	chr6	5004218	5004219	-	0	NA	promoter-TSS (NM_006638)	promoter-TSS (NM_006638)	-53	NM_006638	10799	Hs.511756	NM_006638	ENSG00000124787	RPP40	RNASEP1|bA428J1.3	ribonuclease P/MRP 40kDa subunit	protein-coding
chr19.18416226.-	chr19	18416226	18416227	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17775	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr14.105134386.-	chr14	105134386	105134387	-	0	NA	Intergenic	AluSz|SINE|Alu	-9700	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr7.75166326.-	chr7	75166326	75166327	-	0	NA	"3' UTR (NM_005338, exon 31 of 31)"	"3' UTR (NM_005338, exon 31 of 31)"	8873	NR_028059	5387	Hs.661055	XR_172481	ENSG00000127957	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	postmeiotic segregation increased 2 pseudogene 3	pseudo
chr11.59317980.-	chr11	59317980	59317981	-	0	NA	Intergenic	Intergenic	-35594	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	"olfactory receptor, family 4, subfamily D, member 9"	protein-coding
chr3.9429740.-	chr3	9429740	9429741	-	0	NA	TTS (NR_027007)	TTS (NR_027007)	-9434	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr1.4388604.+	chr1	4388604	4388605	+	0	NA	Intergenic	Intergenic	-83507	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	miscRNA
chr3.44036675.+	chr3	44036675	44036676	+	0	NA	Intergenic	CpG	-119029	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1	microRNA 138-1	miscRNA
chrY.8786235.-	chrY	8786235	8786236	-	0	NA	Intergenic	SVA_C|Other|Other	100812	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr16.22320998.+	chr16	22320998	22320999	+	0	NA	"intron (NM_001258034, intron 5 of 19)"	"intron (NM_001258034, intron 5 of 19)"	12302	NM_001258035	55718	Hs.460298	NM_001258033	ENSG00000058600	POLR3E	RPC5|SIN	polymerase (RNA) III (DNA directed) polypeptide E (80kD)	protein-coding
chr1.6471042.+	chr1	6471042	6471043	+	0	NA	Intergenic	Intergenic	8937	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr9.139740157.-	chr9	139740157	139740158	-	0	NA	"exon (NM_001080482, exon 1 of 1)"	"exon (NM_001080482, exon 1 of 1)"	-1290	NM_001080482	389813	Hs.495485	NM_001080482	ENSG00000232434	C9orf172	-	chromosome 9 open reading frame 172	protein-coding
chr11.16635397.+	chr11	16635397	16635398	+	0	NA	Intergenic	CpG	-124751	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr9.135947031.-	chr9	135947031	135947032	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9666	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr13.110435619.+	chr13	110435619	110435620	+	0	NA	"exon (NM_003749, exon 1 of 2)"	"exon (NM_003749, exon 1 of 2)"	3295	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr11.67346410.-	chr11	67346410	67346411	-	0	NA	Intergenic	AluY|SINE|Alu	4656	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr9.139609399.+	chr9	139609399	139609400	+	0	NA	"intron (NM_152421, intron 1 of 4)"	"intron (NM_152421, intron 1 of 4)"	2375	NM_152421	138311	Hs.741305	NM_152421		FAM69B	C9orf136|pp6977	"family with sequence similarity 69, member B"	protein-coding
chr6.64103961.+	chr6	64103961	64103962	+	0	NA	Intergenic	AluSx|SINE|Alu	-74079	NM_001143940	51557	Hs.149585	NM_001143940	ENSG00000146166	LGSN	GLULD1|LGS	"lengsin, lens protein with glutamine synthetase domain"	protein-coding
chr17.11229441.-	chr17	11229441	11229442	-	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc8|SINE|Alu	-84701	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr19.58125567.-	chr19	58125567	58125568	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	263	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr1.145075938.-	chr1	145075938	145075939	-	0	NA	"5' UTR (NM_022359, exon 1 of 7)"	"5' UTR (NM_022359, exon 1 of 7)"	-248	NM_022359	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr10.120946049.-	chr10	120946049	120946050	-	0	NA	Intergenic	AluJb|SINE|Alu	7704	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr17.34053782.-	chr17	34053782	34053783	-	0	NA	TTS (NM_001282)	TTS (NM_001282)	4897	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr16.31932520.+	chr16	31932520	31932521	+	0	NA	Intergenic	AluY|SINE|Alu	47441	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr9.130653015.+	chr9	130653015	130653016	+	0	NA	"exon (NM_013443, exon 5 of 7)"	"exon (NM_013443, exon 5 of 7)"	8856	NM_013443	30815	Hs.109672	NM_013443	ENSG00000160408	ST6GALNAC6	RP11-203J24.3|SIAT7F|ST6GALNACVI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6"	protein-coding
chr19.2163762.-	chr19	2163762	2163763	-	0	NA	promoter-TSS (NM_032482)	promoter-TSS (NM_032482)	386	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr7.37488474.-	chr7	37488474	37488475	-	0	NA	promoter-TSS (NM_014800)	promoter-TSS (NM_014800)	-81	NM_014800	9844	Hs.434989	NM_001039459		ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
chr9.111476106.+	chr9	111476106	111476107	+	0	NA	Intergenic	L1PA7|LINE|L1	142169	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr11.49199357.+	chr11	49199357	49199358	+	0	NA	"intron (NM_001014986, intron 7 of 17)"	AluSp|SINE|Alu	30865	NM_001014986	2346	Hs.654487	NM_001014986	ENSG00000086205	FOLH1	FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP	folate hydrolase (prostate-specific membrane antigen) 1	protein-coding
chr21.40124165.-	chr21	40124165	40124166	-	0	NA	promoter-TSS (NR_027067)	promoter-TSS (NR_027067)	-16	NR_027067	400866	Hs.278704	NR_027065	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	miscRNA
chr2.163473843.-	chr2	163473843	163473844	-	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	-221414	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chrX.103014817.+	chrX	103014817	103014818	+	0	NA	Intergenic	AluY|SINE|Alu	-16622	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr2.48010457.+	chr2	48010457	48010458	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	236	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr16.18802468.-	chr16	18802468	18802469	-	0	NA	promoter-TSS (NM_001019)	promoter-TSS (NM_001019)	812	NM_001019	6210	Hs.370504	NM_001019	ENSG00000134419	RPS15A	S15a	ribosomal protein S15a	protein-coding
chr20.62325921.-	chr20	62325921	62325922	-	0	NA	"intron (NR_037882, intron 31 of 37)"	"intron (NR_037882, intron 31 of 37)"	2083	NM_003823	8771	Hs.744285	NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	"tumor necrosis factor receptor superfamily, member 6b, decoy"	protein-coding
chr19.40938884.+	chr19	40938884	40938885	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6952	NM_013376	29950	Hs.269898	NM_013376		SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding
chr12.113494352.+	chr12	113494352	113494353	+	0	NA	Intergenic	Intergenic	-1310	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr20.61021249.-	chr20	61021249	61021250	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18620	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr8.120878249.+	chr8	120878249	120878250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7651	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr2.224724706.-	chr2	224724706	224724707	-	0	NA	Intergenic	AluSp|SINE|Alu	22387	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr1.110881125.-	chr1	110881125	110881126	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-668	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr1.212898486.-	chr1	212898486	212898487	-	0	NA	Intergenic	SVA_B|Other|Other	25159	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr11.73347307.+	chr11	73347307	73347308	+	0	NA	Intergenic	AluSq|SINE|Alu	-9916	NM_001130033	58473	Hs.445489	NM_001130033	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	"pleckstrin homology domain containing, family B (evectins) member 1"	protein-coding
chr9.16766063.-	chr9	16766063	16766064	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104723	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr3.88595871.+	chr3	88595871	88595872	+	0	NA	Intergenic	AluSc8|SINE|Alu	-396855	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr12.1056910.+	chr12	1056910	1056911	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSq2|SINE|Alu	1953	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr5.148961074.+	chr5	148961074	148961075	+	0	NA	promoter-TSS (NM_001001669)	promoter-TSS (NM_001001669)	-61	NM_001001669	389337	Hs.256206	NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding
chr13.98796121.-	chr13	98796121	98796122	-	0	NA	"intron (NM_001001715, intron 1 of 2)"	CpG-6549	-687	NM_001001715	10160	Hs.403917	NM_001001715	ENSG00000152767	FARP1	CDEP|PLEKHC2|PPP1R75	"FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)"	protein-coding
chr6.144923528.+	chr6	144923528	144923529	+	0	NA	"intron (NM_007124, intron 50 of 73)"	AluSx3|SINE|Alu	310655	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr1.181058732.-	chr1	181058732	181058733	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1094	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chrX.15568101.-	chrX	15568101	15568102	-	0	NA	"exon (NM_203281, exon 18 of 19)"	"exon (NM_203281, exon 18 of 19)"	-42670	NM_001721	660	Hs.495731	NM_001721	ENSG00000102010	BMX	ETK|PSCTK2|PSCTK3	BMX non-receptor tyrosine kinase	protein-coding
chr9.37036814.+	chr9	37036814	37036815	+	0	NA	Intergenic	CpG	-2338	NM_016734	5079	Hs.654464	NM_016734		PAX5	BSAP	paired box 5	protein-coding
chr6.71356113.+	chr6	71356113	71356114	+	0	NA	Intergenic	AluSq2|SINE|Alu	-21366	NM_001044305	60682	Hs.485717	NM_001044305	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
chr20.5213458.+	chr20	5213458	5213459	+	0	NA	Intergenic	AluJr4|SINE|Alu	81557	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr8.6812638.+	chr8	6812638	6812639	+	0	NA	Intergenic	AluSp|SINE|Alu	-3517	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr5.176829673.-	chr5	176829673	176829674	-	0	NA	"exon (NM_000505, exon 13 of 14)"	"exon (NM_000505, exon 13 of 14)"	2036	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
chr2.120964350.-	chr2	120964350	120964351	-	0	NA	Intergenic	Intergenic	-16634	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr5.28928057.-	chr5	28928057	28928058	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1080	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr7.74447116.+	chr7	74447116	74447117	+	0	NA	Intergenic	AluSx1|SINE|Alu	42583	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr6.17988294.-	chr6	17988294	17988295	-	0	NA	promoter-TSS (NM_001105567)	promoter-TSS (NM_001105567)	440	NM_001243423	63971	Hs.94499	NM_001105566	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
chr9.92897082.+	chr9	92897082	92897083	+	0	NA	Intergenic	AluY|SINE|Alu	-93301	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr17.70637584.-	chr17	70637584	70637585	-	0	NA	promoter-TSS (NR_033876)	promoter-TSS (NR_033876)	973	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	miscRNA
chr16.13701689.+	chr16	13701689	13701690	+	0	NA	Intergenic	AluSx|SINE|Alu	-312325	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr5.128196981.+	chr5	128196981	128196982	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104229	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr6.170123807.+	chr6	170123807	170123808	+	0	NA	"intron (NM_018288, intron 1 of 11)"	"intron (NM_018288, intron 1 of 11)"	299	NM_018288	55274	Hs.435933	NM_018288	ENSG00000130024	PHF10	BAF45A|XAP135	PHD finger protein 10	protein-coding
chr18.38415935.-	chr18	38415935	38415936	-	0	NA	Intergenic	AluY|SINE|Alu	-684626	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr3.196619080.+	chr3	196619080	196619081	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24353	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr5.175732260.+	chr5	175732260	175732261	+	0	NA	"intron (NM_198567, intron 3 of 8)"	SVA_F|Other|Other	56549	NM_001079685	57179	Hs.743257	NM_001079684	ENSG00000122203	KIAA1191	p60MONOX	KIAA1191	protein-coding
chr7.1798912.-	chr7	1798912	1798913	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50114	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr20.62108062.+	chr20	62108062	62108063	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4069	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr2.136633755.+	chr2	136633755	136633756	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	292	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr9.29188726.-	chr9	29188726	29188727	-	0	NA	"intron (NM_001258282, intron 1 of 6)"	SVA_D|Other|Other	-24272	NM_001258282	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr16.46387493.-	chr16	46387493	46387494	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215516	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr22.42052425.+	chr22	42052425	42052426	+	0	NA	"intron (NM_001469, intron 9 of 12)"	AluSq2|SINE|Alu	32488	NM_001003796	4809	Hs.182255	NM_001003796	ENSG00000100138	NHP2L1	15.5K|FA-1|FA1|NHPX|OTK27|SNRNP15-5|SNU13|SPAG12|SSFA1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	protein-coding
chr17.11800289.+	chr17	11800289	11800290	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14070	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr19.50670023.+	chr19	50670023	50670024	+	0	NA	Intergenic	AluSx|SINE|Alu	-3485	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr3.37245172.+	chr3	37245172	37245173	+	0	NA	Intergenic	AluSx1|SINE|Alu	-27321	NM_006309	9209	Hs.740522	NM_001134369	ENSG00000093167	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
chr1.39450199.-	chr1	39450199	39450200	-	0	NA	Intergenic	AluY|SINE|Alu	6717	NM_024595	79647	Hs.293563	NM_001136275	ENSG00000174574	AKIRIN1	C1orf108|RP11-781D11.2|STRF2	akirin 1	protein-coding
chr17.77810313.-	chr17	77810313	77810314	-	0	NA	"intron (NM_003655, intron 3 of 4)"	"intron (NM_003655, intron 3 of 4)"	-2900	NM_003655	8535	Hs.743401	NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
chr19.21728018.+	chr19	21728018	21728019	+	0	NA	Intergenic	AluYc|SINE|Alu	39581	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr22.19774496.+	chr22	19774496	19774497	+	0	NA	Intergenic	Intergenic	30270	NM_005992	6899	Hs.173984	NM_005992	ENSG00000184058	TBX1	CAFS|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCFS	T-box 1	protein-coding
chr5.1858811.+	chr5	1858811	1858812	+	0	NA	Intergenic	Intergenic	24069	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr20.50013451.+	chr20	50013451	50013452	+	0	NA	"intron (NM_173091, intron 9 of 9)"	"intron (NM_173091, intron 9 of 9)"	56063	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	miscRNA
chr18.10581558.+	chr18	10581558	10581559	+	0	NA	Intergenic	AluSq2|SINE|Alu	55685	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr19.19738900.-	chr19	19738900	19738901	-	0	NA	"intron (NM_004720, intron 1 of 2)"	CpG	-139	NM_004720	9170	Hs.122575	NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
chr4.114652849.+	chr4	114652849	114652850	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30234	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chrX.13062308.+	chrX	13062308	13062309	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	609	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr12.50448253.-	chr12	50448253	50448254	-	0	NA	Intergenic	AluSx|SINE|Alu	3167	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr10.79507516.+	chr10	79507516	79507517	+	0	NA	Intergenic	Intergenic	-109939	NM_001271522	3778	Hs.144795	NM_001014797	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	"potassium large conductance calcium-activated channel, subfamily M, alpha member 1"	protein-coding
chr1.32122141.-	chr1	32122141	32122142	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11303	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr8.86574504.+	chr8	86574504	86574505	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	238	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr4.45824700.-	chr4	45824700	45824701	-	0	NA	Intergenic	AluY|SINE|Alu	-301382	NM_173536	2565	Hs.375051	NM_173536	ENSG00000163285	GABRG1	-	"gamma-aminobutyric acid (GABA) A receptor, gamma 1"	protein-coding
chr3.8721267.+	chr3	8721267	8721268	+	0	NA	Intergenic	Intergenic	-27503	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr17.4435090.+	chr17	4435090	4435091	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23591	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr20.13660618.+	chr20	13660618	13660619	+	0	NA	Intergenic	AluY|SINE|Alu	-41035	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr5.178491434.-	chr5	178491434	178491435	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3827	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr15.75494188.+	chr15	75494188	75494189	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-33	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr21.47403481.+	chr21	47403481	47403482	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1818	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr8.144504253.+	chr8	144504253	144504254	+	0	NA	Intergenic	Intergenic	8349	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr15.59685693.-	chr15	59685693	59685694	-	0	NA	Intergenic	AluSg4|SINE|Alu	20622	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
chr2.44380959.-	chr2	44380959	44380960	-	0	NA	Intergenic	AluY|SINE|Alu	15041	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr2.192374864.+	chr2	192374864	192374865	+	0	NA	Intergenic	AluY|SINE|Alu	-167934	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr7.5334618.-	chr7	5334618	5334619	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12057	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr15.97879774.-	chr15	97879774	97879775	-	0	NA	Intergenic	AluSp|SINE|Alu	-537885	NR_024172	91948	Hs.130423	NR_024172	ENSG00000251209	LOC91948	-	uncharacterized LOC91948	miscRNA
chr21.31598716.-	chr21	31598716	31598717	-	0	NA	Intergenic	AluSx4|SINE|Alu	10247	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr12.116724250.+	chr12	116724250	116724251	+	0	NA	Intergenic	AluY|SINE|Alu	-9259	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr12.132353145.+	chr12	132353145	132353146	+	0	NA	Intergenic	Intergenic	-26134	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr1.161508229.+	chr1	161508229	161508230	+	0	NA	Intergenic	AluYf4|SINE|Alu	11589	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr1.31586413.+	chr1	31586413	31586414	+	0	NA	Intergenic	AluY|SINE|Alu	-47849	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr18.33543821.+	chr18	33543821	33543822	+	0	NA	Intergenic	AluY|SINE|Alu	-8767	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr16.78269422.+	chr16	78269422	78269423	+	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	136095	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr1.59041963.-	chr1	59041963	59041964	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1203	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr19.10041269.-	chr19	10041269	10041270	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5801	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr10.6985539.+	chr10	6985539	6985540	+	0	NA	Intergenic	AluSx1|SINE|Alu	163979	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr13.33048731.+	chr13	33048731	33048732	+	0	NA	"intron (NM_033111, intron 6 of 9)"	AluSx|SINE|Alu	23898	NR_051980	100462953	Hs.737108	NR_051980		MINOS1P1	CG012|N4BP2L2-IT|N4BP2L2-IT1|N4BP2L2IT1	mitochondrial inner membrane organizing system 1 pseudogene 1	pseudo
chr4.138974421.-	chr4	138974421	138974422	-	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	35747	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr8.94955718.+	chr8	94955718	94955719	+	0	NA	Intergenic	L1M4b|LINE|L1	26439	NM_001161781	54704	Hs.22265	NM_001161779	ENSG00000164951	PDP1	PDH|PDP|PDPC|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding
chr15.83365804.-	chr15	83365804	83365805	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12831	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr3.77689528.-	chr3	77689528	77689529	-	0	NA	"intron (NM_002942, intron 24 of 25)"	AluY|SINE|Alu	-542365	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chrX.141491618.+	chrX	141491618	141491619	+	0	NA	Intergenic	AluY|SINE|Alu	-198542	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr14.104097509.-	chr14	104097509	104097510	-	0	NA	"intron (NM_182923, intron 1 of 14)"	AluY|SINE|Alu	-1984	NM_005552	3831	Hs.657678	NM_001130107	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
chr2.20424089.-	chr2	20424089	20424090	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-838	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr22.46522742.+	chr22	46522742	46522743	+	0	NA	Intergenic	Intergenic	13176	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr14.105736137.+	chr14	105736137	105736138	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20396	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chrX.147774589.+	chrX	147774589	147774590	+	0	NA	"intron (NM_002025, intron 3 of 20)"	AluY|SINE|Alu	-26026	NM_001170628	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr2.80188710.-	chr2	80188710	80188711	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	312225	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr2.121425232.-	chr2	121425232	121425233	-	0	NA	Intergenic	AluY|SINE|Alu	129635	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr6.114067437.-	chr6	114067437	114067438	-	0	NA	Intergenic	AluY|SINE|Alu	111090	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr20.47425037.-	chr20	47425037	47425038	-	0	NA	"intron (NM_020820, intron 1 of 39)"	L2b|LINE|L2	-19383	NM_020820	57580	Hs.744064	NM_020820	ENSG00000124126	PREX1	P-REX1	"phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1"	protein-coding
chr7.2933111.-	chr7	2933111	2933112	-	0	NA	Intergenic	AluSx1|SINE|Alu	49152	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr20.62111473.+	chr20	62111473	62111474	+	0	NA	Intergenic	CpG	-7480	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr2.173941022.-	chr2	173941022	173941023	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-457	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr16.31932458.-	chr16	31932458	31932459	-	0	NA	Intergenic	MER67C|LTR|ERV1	-47379	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr17.1107240.+	chr17	1107240	1107241	+	0	NA	Intergenic	CpG	-16624	NM_001159746	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr7.56143765.-	chr7	56143765	56143766	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11848	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr1.113336806.-	chr1	113336806	113336807	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73617	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr11.100596523.-	chr11	100596523	100596524	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38116	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr3.126635666.-	chr3	126635666	126635667	-	0	NA	"intron (NM_032343, intron 6 of 7)"	"intron (NM_032343, intron 6 of 7)"	71771	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
chr19.2300123.+	chr19	2300123	2300124	+	0	NA	"intron (NM_001101391, intron 1 of 1)"	AluSx|SINE|Alu	8033	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr16.69352915.-	chr16	69352915	69352916	-	0	NA	"intron (NM_013245, intron 5 of 10)"	"intron (NM_013245, intron 5 of 10)"	-7628	NM_013245	27183	Hs.128420	NM_013245	ENSG00000132612	VPS4A	SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A (S. cerevisiae)	protein-coding
chr1.27394493.+	chr1	27394493	27394494	+	0	NA	Intergenic	AluY|SINE|Alu	-55160	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr3.42642387.+	chr3	42642387	42642388	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	185	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr6.8388446.+	chr6	8388446	8388447	+	0	NA	Intergenic	LTR9|LTR|ERV1	47348	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr18.29729781.-	chr18	29729781	29729782	-	0	NA	Intergenic	AluSp|SINE|Alu	40206	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr21.11107108.+	chr21	11107108	11107109	+	0	NA	Intergenic	CpG	-8171	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr17.1389865.-	chr17	1389865	1389866	-	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	814	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr22.22550459.+	chr22	22550459	22550460	+	0	NA	Intergenic	Intergenic	-48741	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr15.90470270.+	chr15	90470270	90470271	+	0	NA	Intergenic	AluY|SINE|Alu	-14048	NM_182616	348110	Hs.6734	NM_182616		C15orf38	-	chromosome 15 open reading frame 38	protein-coding
chr10.134121796.-	chr10	134121796	134121797	-	0	NA	promoter-TSS (NM_173575)	promoter-TSS (NM_173575)	319	NM_173575	282974	Hs.469002	NM_173575	ENSG00000165752	STK32C	PKE|RP11-140A10.1|YANK3	serine/threonine kinase 32C	protein-coding
chr1.151473966.-	chr1	151473966	151473967	-	0	NA	Intergenic	AluSx|SINE|Alu	9896	NM_020770	57530	Hs.591464	NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
chr4.148075841.-	chr4	148075841	148075842	-	0	NA	Intergenic	AluY|SINE|Alu	208807	NM_031956	83894	Hs.378893	NM_031956	ENSG00000137473	TTC29	NYD-SP14|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
chr5.157098860.+	chr5	157098860	157098861	+	0	NA	"intron (NM_001145132, intron 1 of 2)"	CpG	299	NM_001145132	100190949	Hs.720862	NM_001145132	ENSG00000187658	C5orf52	-	chromosome 5 open reading frame 52	protein-coding
chr12.33592627.-	chr12	33592627	33592628	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-127	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr2.27273263.+	chr2	27273263	27273264	+	0	NA	Intergenic	CpG	-1228	NM_021831	60509	Hs.138207	NM_001035507	ENSG00000084693	AGBL5	-	ATP/GTP binding protein-like 5	protein-coding
chr21.33279998.+	chr21	33279998	33279999	+	0	NA	"intron (NM_014586, intron 1 of 10)"	L1MB2|LINE|L1	34370	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr17.7984207.-	chr17	7984207	7984208	-	0	NA	"exon (NM_001139, exon 4 of 15)"	"exon (NM_001139, exon 4 of 15)"	-6814	NM_001139	242	Hs.136574	NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	"arachidonate 12-lipoxygenase, 12R type"	protein-coding
chr5.2391209.+	chr5	2391209	2391210	+	0	NA	Intergenic	Intergenic	360560	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr3.95669690.-	chr3	95669690	95669691	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	267653	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr1.147390327.-	chr1	147390327	147390328	-	0	NA	Intergenic	AluY|SINE|Alu	10179	NM_016334	51463	Hs.645432	NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|SH120	G protein-coupled receptor 89B	protein-coding
chr11.46721174.-	chr11	46721174	46721175	-	0	NA	"intron (NM_004308, intron 1 of 12)"	AluSg|SINE|Alu	-1041	NM_004308	392	Hs.138860	NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
chr20.17661348.-	chr20	17661348	17661349	-	0	NA	"intron (NM_001042576, intron 1 of 25)"	MIRb|SINE|MIR	-1580	NM_004587	6238	Hs.472213	NM_001042576	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES	ribosome binding protein 1	protein-coding
chr19.2492346.-	chr19	2492346	2492347	-	0	NA	Intergenic	AluSz|SINE|Alu	-16223	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr19.9311187.-	chr19	9311187	9311188	-	0	NA	Intergenic	L1MA3|LINE|L1	-14360	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr2.220436083.-	chr2	220436083	220436084	-	0	NA	promoter-TSS (NM_002191)	promoter-TSS (NM_002191)	-185	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr17.74707059.-	chr17	74707059	74707060	-	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	3	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr10.69822259.+	chr10	69822259	69822260	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12844	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr22.38498781.+	chr22	38498781	38498782	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7895	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr17.57645313.-	chr17	57645313	57645314	-	0	NA	"intron (NM_024612, intron 2 of 17)"	"intron (NM_024612, intron 2 of 17)"	-2427	NM_024612	79665	Hs.29403	XM_003846599	ENSG00000108406	DHX40	DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding
chr2.90482963.+	chr2	90482963	90482964	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365012	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr5.150051446.+	chr5	150051446	150051447	+	0	NA	"exon (NM_133371, exon 5 of 7)"	"exon (NM_133371, exon 5 of 7)"	11043	NM_133371	91977	Hs.91626	NM_001122853	ENSG00000164591	MYOZ3	CS-3|CS3|FRP3	myozenin 3	protein-coding
chr21.46737219.-	chr21	46737219	46737220	-	0	NA	Intergenic	Intergenic	-29252	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr5.2391232.-	chr5	2391232	2391233	-	0	NA	Intergenic	Intergenic	-360537	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr17.20946924.-	chr17	20946924	20946925	-	0	NA	promoter-TSS (NM_015276)	promoter-TSS (NM_015276)	572	NM_015276	23326	Hs.462492	NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
chr18.29434844.-	chr18	29434844	29434845	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88247	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr3.183052326.+	chr3	183052326	183052327	+	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	81294	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr11.122591807.-	chr11	122591807	122591808	-	0	NA	"intron (NM_032873, intron 1 of 13)"	AluSc8|SINE|Alu	-65409	NM_032873	84959	Hs.444075	NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
chr11.110300960.-	chr11	110300960	110300961	-	0	NA	"exon (NM_004109, exon 1 of 4)"	"exon (NM_004109, exon 1 of 4)"	-299	NM_004109	2230	Hs.744	NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
chr22.46326783.-	chr22	46326783	46326784	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46225	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr21.47461334.-	chr21	47461334	47461335	-	0	NA	Intergenic	Intergenic	56699	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr17.74632781.+	chr17	74632781	74632782	+	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	7113	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr11.130241840.-	chr11	130241840	130241841	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56699	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr19.11104316.-	chr19	11104316	11104317	-	0	NA	"intron (NM_001128845, intron 7 of 32)"	"intron (NM_001128845, intron 7 of 32)"	-9488	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr19.49186316.-	chr19	49186316	49186317	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10052	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr14.23517053.-	chr14	23517053	23517054	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5677	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr5.74743634.-	chr5	74743634	74743635	-	0	NA	"intron (NM_031361, intron 3 of 16)"	AluJo|SINE|Alu	-63820	NM_005713	10087	Hs.270437	NM_001130105	ENSG00000113163	COL4A3BP	CERT|CERTL|GPBP|STARD11	"collagen, type IV, alpha 3 (Goodpasture antigen) binding protein"	protein-coding
chr1.156731138.+	chr1	156731138	156731139	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6136	NM_005973	5546	Hs.516948	NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	papillary renal cell carcinoma (translocation-associated)	protein-coding
chr7.56109517.+	chr7	56109517	56109518	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9751	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr12.67941930.-	chr12	67941930	67941931	-	0	NA	Intergenic	AluY|SINE|Alu	100582	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr16.89034183.+	chr16	89034183	89034184	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9321	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr5.37332553.-	chr5	37332553	37332554	-	0	NA	"intron (NM_004298, intron 13 of 34)"	AluY|SINE|Alu	-38334	NM_004298	9631	Hs.547696	NM_004298	ENSG00000113569	NUP155	N155	nucleoporin 155kDa	protein-coding
chr2.114361301.+	chr2	114361301	114361302	+	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	-7	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr17.21825580.+	chr17	21825580	21825581	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	210	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr4.178730013.+	chr4	178730013	178730014	+	0	NA	"intron (NR_028342, intron 2 of 5)"	AluY|SINE|Alu	80102	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LOC285501	-	uncharacterized LOC285501	miscRNA
chr3.194361399.-	chr3	194361399	194361400	-	0	NA	TTS (NM_018385)	TTS (NM_018385)	7249	NM_001166306	93109	Hs.478729	NM_001011655	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
chr5.2371486.+	chr5	2371486	2371487	+	0	NA	Intergenic	Intergenic	380283	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr7.55805139.+	chr7	55805139	55805140	+	0	NA	Intergenic	Intergenic	-32879	NR_003949	360132	Hs.446691	NM_182827	ENSG00000176826	FKBP9L	-	FK506 binding protein 9-like	pseudo
chr16.443657.-	chr16	443657	443658	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3535	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr22.46504429.+	chr22	46504429	46504430	+	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	-4200	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr17.18906825.+	chr17	18906825	18906826	+	0	NA	"intron (NM_001039999, intron 2 of 5)"	"intron (NM_001039999, intron 2 of 5)"	1235	NM_001039999	644815	Hs.710727	NM_001039999	ENSG00000188522	FAM83G	-	"family with sequence similarity 83, member G"	protein-coding
chr3.9429720.+	chr3	9429720	9429721	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9454	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr11.70371224.-	chr11	70371224	70371225	-	0	NA	"intron (NM_012309, intron 14 of 22)"	ERVL-E-int|LTR|ERVL	105975	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	miscRNA
chr6.158700231.+	chr6	158700231	158700232	+	0	NA	Intergenic	AluY|SINE|Alu	-33461	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr20.43342091.-	chr20	43342091	43342092	-	0	NA	Intergenic	AluSx|SINE|Alu	1794	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr19.53966571.-	chr19	53966571	53966572	-	0	NA	Intergenic	Intergenic	4418	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr10.76198240.+	chr10	76198240	76198241	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	261993	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr7.157234950.-	chr7	157234950	157234951	-	0	NA	Intergenic	CpG	-105239	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr11.1785100.-	chr11	1785100	1785101	-	0	NA	"5' UTR (NM_001909, exon 1 of 9)"	"5' UTR (NM_001909, exon 1 of 9)"	-122	NM_001909	1509	Hs.654447	NM_001909	ENSG00000117984	CTSD	CLN10|CPSD	cathepsin D	protein-coding
chr18.34900227.-	chr18	34900227	34900228	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	AluY|SINE|Alu	-245773	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr19.21789899.-	chr19	21789899	21789900	-	0	NA	Intergenic	SVA_D|Other|Other	-101462	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr11.118978791.-	chr11	118978791	118978792	-	0	NA	"exon (NM_014807, exon 1 of 14)"	"exon (NM_014807, exon 1 of 14)"	-698	NM_014807	9854	Hs.26899	NM_014807		C2CD2L	TMEM24	C2CD2-like	protein-coding
chr6.109611735.+	chr6	109611735	109611736	+	0	NA	Intergenic	CpG	-3771	NR_028595	221262	Hs.723571	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	"coiled-coil domain containing 162, pseudogene"	pseudo
chr17.8061042.+	chr17	8061042	8061043	+	0	NA	Intergenic	AluY|SINE|Alu	5251	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr19.1663558.-	chr19	1663558	1663559	-	0	NA	Intergenic	Intergenic	11230	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr7.5583887.-	chr7	5583887	5583888	-	0	NA	Intergenic	AluY|SINE|Alu	13655	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr19.18180416.-	chr19	18180416	18180417	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17281	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr15.76627347.+	chr15	76627347	76627348	+	0	NA	Intergenic	AluSg|SINE|Alu	-1800	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr19.14508400.-	chr19	14508400	14508401	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16444	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr19.5948186.+	chr19	5948186	5948187	+	0	NA	"intron (NM_007320, intron 2 of 15)"	AluY|SINE|Alu	30134	NM_003624	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
chr6.151727636.-	chr6	151727636	151727637	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14959	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr14.105618912.-	chr14	105618912	105618913	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16249	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr11.47284118.-	chr11	47284118	47284119	-	0	NA	"intron (NM_001130102, intron 6 of 8)"	AluSz|SINE|Alu	-4650	NM_005693	10062	Hs.438863	NM_001130101	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	"nuclear receptor subfamily 1, group H, member 3"	protein-coding
chr7.1001898.+	chr7	1001898	1001899	+	0	NA	Intergenic	Intergenic	-7609	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr15.100514120.-	chr15	100514120	100514121	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	166988	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr1.247469994.-	chr1	247469994	247469995	-	0	NA	"intron (NM_032752, intron 8 of 8)"	AluSx1|SINE|Alu	-25051	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr7.69745576.-	chr7	69745576	69745577	-	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	-681670	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr6.73999589.-	chr6	73999589	73999590	-	0	NA	"intron (NR_027005, intron 3 of 4)"	AluYb9|SINE|Alu	-20349	NM_001251874	80759	Hs.433062	NM_001251874	ENSG00000135314	KHDC1	C6orf148|NDG1|bA257K9.4	KH homology domain containing 1	protein-coding
chr2.170666376.-	chr2	170666376	170666377	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11054	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr10.120841961.-	chr10	120841961	120841962	-	0	NA	Intergenic	AluSx3|SINE|Alu	1627	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr20.35629332.-	chr20	35629332	35629333	-	0	NA	"intron (NM_002895, intron 21 of 21)"	SVA_D|Other|Other	49086	NM_015474	25939	Hs.580681	NM_015474		SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88	SAM domain and HD domain 1	protein-coding
chr20.36067096.-	chr20	36067096	36067097	-	0	NA	Intergenic	Intergenic	82511	NM_005386	4826	Hs.504703	NM_005386	ENSG00000053438	NNAT	Peg5	neuronatin	protein-coding
chr10.65213767.+	chr10	65213767	65213768	+	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSx|SINE|Alu	-11222	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr17.36083161.+	chr17	36083161	36083162	+	0	NA	"intron (NM_001165923, intron 4 of 8)"	AluY|SINE|Alu	21935	NM_000458	6928	Hs.191144	NM_000458	ENSG00000108753	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
chr10.59080659.+	chr10	59080659	59080660	+	0	NA	Intergenic	Intergenic	-16340	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr4.114652854.+	chr4	114652854	114652855	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30229	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr20.20772520.+	chr20	20772520	20772521	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79254	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr12.33592628.-	chr12	33592628	33592629	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-126	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr3.50701728.+	chr3	50701728	50701729	+	0	NA	Intergenic	AluY|SINE|Alu	-10783	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr12.106606574.+	chr12	106606574	106606575	+	0	NA	Intergenic	L1PA7|LINE|L1	35139	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr15.89721784.+	chr15	89721784	89721785	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43138	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr5.176091481.+	chr5	176091481	176091482	+	0	NA	Intergenic	Intergenic	17093	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr10.128174237.-	chr10	128174237	128174238	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35773	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr16.85371283.+	chr16	85371283	85371284	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-31352	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr11.2213961.+	chr11	2213961	2213962	+	0	NA	Intergenic	Intergenic	19668	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr14.106359676.-	chr14	106359676	106359677	-	0	NA	Intergenic	Intergenic	24162	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr3.129081674.-	chr3	129081674	129081675	-	0	NA	Intergenic	SVA_D|Other|Other	-34517	NR_002992	677797	Hs.711399	NR_002992	ENSG00000207088	SNORA7B	ACA7B	"small nucleolar RNA, H/ACA box 7B"	snoRNA
chr19.10587526.+	chr19	10587526	10587527	+	0	NA	Intergenic	AluSq2|SINE|Alu	23893	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr11.19881569.+	chr11	19881569	19881570	+	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	-99940	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr12.77339573.+	chr12	77339573	77339574	+	0	NA	Intergenic	AluY|SINE|Alu	-66774	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr16.31932477.+	chr16	31932477	31932478	+	0	NA	Intergenic	AluY|SINE|Alu	47398	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr17.809970.+	chr17	809970	809971	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42619	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr6.70692597.+	chr6	70692597	70692598	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116149	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr2.122878784.-	chr2	122878784	122878785	-	0	NA	Intergenic	AluY|SINE|Alu	-365663	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr3.102973981.-	chr3	102973981	102973982	-	0	NA	Intergenic	SVA_D|Other|Other	-820122	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr8.142148779.+	chr8	142148779	142148780	+	0	NA	"intron (NM_014957, intron 3 of 22)"	AluSx1|SINE|Alu	10059	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN/MADD domain containing 3	protein-coding
chr5.159429842.-	chr5	159429842	159429843	-	0	NA	Intergenic	AluSz|SINE|Alu	6338	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr16.4505960.+	chr16	4505960	4505961	+	0	NA	"3' UTR (NM_001135110, exon 11 of 11)"	"3' UTR (NM_001135110, exon 11 of 11)"	-18759	NM_001127206	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr2.228327531.-	chr2	228327531	228327532	-	0	NA	Intergenic	Intergenic	9317	NR_049888	100847081		NR_049888	ENSG00000266382	MIR5703	-	microRNA 5703	miscRNA
chr9.74827307.-	chr9	74827307	74827308	-	0	NA	"intron (NM_001242505, intron 4 of 15)"	AluY|SINE|Alu	-63040	NM_004293	9615	Hs.494163	NM_001242505	ENSG00000119125	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
chr16.656870.+	chr16	656870	656871	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16697	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr7.74447215.-	chr7	74447215	74447216	-	0	NA	Intergenic	Intergenic	-42484	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr14.82601442.-	chr14	82601442	82601443	-	0	NA	Intergenic	AluY|SINE|Alu	601237	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr2.90482965.-	chr2	90482965	90482966	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365010	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr19.2307936.-	chr19	2307936	2307937	-	0	NA	"intron (NM_001101391, intron 1 of 1)"	CpG	-220	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr12.132116751.+	chr12	132116751	132116752	+	0	NA	Intergenic	L1ME1|LINE|L1	-78881	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr9.11197040.-	chr9	11197040	11197041	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584317	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.161879469.+	chr1	161879469	161879470	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114175	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr17.27717870.+	chr17	27717870	27717871	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-73	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr10.126538783.+	chr10	126538783	126538784	+	0	NA	Intergenic	AluSx|SINE|Alu	48429	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr8.41166044.-	chr8	41166044	41166045	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-946	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr5.1882815.-	chr5	1882815	1882816	-	0	NA	promoter-TSS (NM_016358)	promoter-TSS (NM_016358)	-65	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr17.2241222.-	chr17	2241222	2241223	-	0	NA	promoter-TSS (NM_018128)	promoter-TSS (NM_018128)	-414	NM_001098509	9905	Hs.513861	NM_001098509	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
chr1.70033256.-	chr1	70033256	70033257	-	0	NA	Intergenic	CpG	192602	NM_020794	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
chr5.92346120.-	chr5	92346120	92346121	-	0	NA	Intergenic	AluSq2|SINE|Alu	-560379	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr19.46277578.-	chr19	46277578	46277579	-	0	NA	"intron (NM_001081563, intron 8 of 13)"	AluY|SINE|Alu	5081	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
chr3.42630479.+	chr3	42630479	42630480	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1819	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr17.74616082.+	chr17	74616082	74616083	+	0	NA	Intergenic	AluSx|SINE|Alu	23812	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chrX.69654755.-	chrX	69654755	69654756	-	0	NA	Intergenic	Intergenic	9950	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr2.170666417.+	chr2	170666417	170666418	+	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	11095	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr9.1433345.-	chr9	1433345	1433346	-	0	NA	Intergenic	AluSc|SINE|Alu	-382725	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr12.34492687.-	chr12	34492687	34492688	-	0	NA	Intergenic	GSATII|Satellite|centr	-317471	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chrX.53808337.+	chrX	53808337	53808338	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94640	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr2.239047337.+	chr2	239047337	239047338	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-26	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr11.782212.+	chr11	782212	782213	+	0	NA	Intergenic	Intergenic	2758	NR_046316	171391	Hs.711081	NR_046316		NS3BP	-	NS3BP	miscRNA
chr5.179167546.-	chr5	179167546	179167547	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7695	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr8.146024422.+	chr8	146024422	146024423	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	161	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr22.51009803.-	chr22	51009803	51009804	-	0	NA	"intron (NM_152246, intron 14 of 19)"	"intron (NM_152246, intron 14 of 19)"	-6703	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr18.70534378.-	chr18	70534378	70534379	-	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	-432	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr20.58244242.+	chr20	58244242	58244243	+	0	NA	"intron (NM_080672, intron 1 of 12)"	MIRb|SINE|MIR	-7474	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr11.16894126.-	chr11	16894126	16894127	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133978	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr3.60485396.+	chr3	60485396	60485397	+	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	751737	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr9.137200951.-	chr9	137200951	137200952	-	0	NA	Intergenic	Intergenic	17365	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chrX.133565051.+	chrX	133565051	133565052	+	0	NA	Intergenic	AluSp|SINE|Alu	-29124	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr16.1815048.-	chr16	1815048	1815049	-	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	-6662	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr16.50142560.+	chr16	50142560	50142561	+	0	NA	Intergenic	AluSz6|SINE|Alu	42679	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr1.226350808.+	chr1	226350808	226350809	+	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	23615	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr3.126702429.-	chr3	126702429	126702430	-	0	NA	Intergenic	CpG	5008	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
chr6.134589691.+	chr6	134589691	134589692	+	0	NA	"intron (NM_001143676, intron 1 of 13)"	AluY|SINE|Alu	49505	NM_001143676	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr18.5524266.+	chr18	5524266	5524267	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19720	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr1.107439602.+	chr1	107439602	107439603	+	0	NA	Intergenic	AluY|SINE|Alu	-159665	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
chr15.41674334.+	chr15	41674334	41674335	+	0	NA	Intergenic	SVA_F|Other|Other	20324	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr18.34765018.+	chr18	34765018	34765019	+	0	NA	"intron (NM_020776, intron 9 of 9)"	AluY|SINE|Alu	-355839	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr1.62231046.+	chr1	62231046	62231047	+	0	NA	"intron (NM_176877, intron 3 of 42)"	AluJr|SINE|Alu	22897	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr11.69189623.-	chr11	69189623	69189624	-	0	NA	Intergenic	Intergenic	-128001	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr22.30753759.+	chr22	30753759	30753760	+	0	NA	promoter-TSS (NM_001005409)	promoter-TSS (NM_001005409)	-846	NM_005877	10291	Hs.505597	NM_001005409	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	"splicing factor 3a, subunit 1, 120kDa"	protein-coding
chr22.50871776.-	chr22	50871776	50871777	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41688	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr16.68233559.+	chr16	68233559	68233560	+	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	36577	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr3.85080927.+	chr3	85080927	85080928	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72794	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr16.4537761.-	chr16	4537761	4537762	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8098	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr3.49823911.-	chr3	49823911	49823912	-	0	NA	promoter-TSS (NM_153273)	promoter-TSS (NM_153273)	-62	NM_001006115	9807	Hs.386168	NM_001006115	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
chr2.71561998.-	chr2	71561998	71561999	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3113	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr2.19132846.+	chr2	19132846	19132847	+	0	NA	Intergenic	AluYk4|SINE|Alu	-362000	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr7.5570043.+	chr7	5570043	5570044	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	189	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr3.14349489.+	chr3	14349489	14349490	+	0	NA	Intergenic	Intergenic	-94617	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr7.6843807.+	chr7	6843807	6843808	+	0	NA	"intron (NM_198097, intron 12 of 14)"	AluSz|SINE|Alu	22119	NM_198097	221960	Hs.567779	NM_198097		CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
chr19.21734808.-	chr19	21734808	21734809	-	0	NA	Intergenic	SVA_D|Other|Other	-46371	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr3.128194232.-	chr3	128194232	128194233	-	0	NA	Intergenic	Intergenic	8141	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr10.28821803.-	chr10	28821803	28821804	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-381	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr8.27695254.-	chr8	27695254	27695255	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-95	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr1.95285778.-	chr1	95285778	95285779	-	0	NA	promoter-TSS (NM_001258342)	promoter-TSS (NM_001258342)	120	NM_001258343	126969	Hs.483423	NM_001114106	ENSG00000143036	SLC44A3	CTL3	"solute carrier family 44, member 3"	protein-coding
chr8.67618033.+	chr8	67618033	67618034	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6620	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr10.116527578.-	chr10	116527578	116527579	-	0	NA	Intergenic	CpG	53925	NM_001135051	57700	Hs.192619	NM_001135051	ENSG00000151553	FAM160B1	KIAA1600|bA106M7.3	"family with sequence similarity 160, member B1"	protein-coding
chr1.113544077.+	chr1	113544077	113544078	+	0	NA	Intergenic	AluY|SINE|Alu	-45102	NM_003051	6566	Hs.75231	NM_001166496	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1	"solute carrier family 16, member 1 (monocarboxylic acid transporter 1)"	protein-coding
chr3.195498040.-	chr3	195498040	195498041	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40804	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chrX.30619866.+	chrX	30619866	30619867	+	0	NA	Intergenic	SVA_F|Other|Other	-23833	NM_025159	80231	Hs.665009	NM_025159	ENSG00000120280	CXorf21	-	chromosome X open reading frame 21	protein-coding
chr1.19972996.-	chr1	19972996	19972997	-	0	NA	"intron (NM_001204086, intron 1 of 3)"	"intron (NM_001204086, intron 1 of 3)"	-736	NM_001204086	4681	Hs.654502	NM_001204084	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	"neuroblastoma 1, DAN family BMP antagonist"	protein-coding
chr2.183551387.-	chr2	183551387	183551388	-	0	NA	Intergenic	L1PA5|LINE|L1	29381	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr20.9049192.-	chr20	9049192	9049193	-	0	NA	promoter-TSS (NM_001172646)	promoter-TSS (NM_001172646)	509	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	"phospholipase C, beta 4"	protein-coding
chr20.31479512.+	chr20	31479512	31479513	+	0	NA	Intergenic	Intergenic	71813	NM_012325	22919	Hs.472437	NM_012325	ENSG00000101367	MAPRE1	EB1	"microtubule-associated protein, RP/EB family, member 1"	protein-coding
chr16.28379563.+	chr16	28379563	28379564	+	0	NA	Intergenic	CpG	35599	NM_001099661	728689	Hs.535464	XM_003960655	ENSG00000205609	EIF3CL	-	"eukaryotic translation initiation factor 3, subunit C-like"	protein-coding
chr16.88384033.+	chr16	88384033	88384034	+	0	NA	Intergenic	MIRc|SINE|MIR	-109846	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr12.54218622.-	chr12	54218622	54218623	-	0	NA	Intergenic	AluSp|SINE|Alu	97315	NM_001143682	57658	Hs.156667	NM_001143682	ENSG00000012822	CALCOCO1	Cocoa|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
chr20.60524497.+	chr20	60524497	60524498	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	4221	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr8.1205005.-	chr8	1205005	1205006	-	0	NA	Intergenic	Intergenic	-45822	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr1.54839993.-	chr1	54839993	54839994	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-31986	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr14.60336425.-	chr14	60336425	60336426	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1132	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr1.181058727.-	chr1	181058727	181058728	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1089	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr1.11960166.+	chr1	11960166	11960167	+	0	NA	Intergenic	AluSc8|SINE|Alu	26319	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
chr8.86574398.+	chr8	86574398	86574399	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	344	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr14.101044229.+	chr14	101044229	101044230	+	0	NA	Intergenic	Intergenic	-8098	NM_020836	57596	Hs.211751	NM_001159531	ENSG00000183092	BEGAIN	-	brain-enriched guanylate kinase-associated	protein-coding
chr2.136133251.+	chr2	136133251	136133252	+	0	NA	"intron (NM_032143, intron 3 of 20)"	AluY|SINE|Alu	155555	NM_032143	84083	Hs.658422	NM_032143	ENSG00000121988	ZRANB3	4933425L19Rik|AH2	"zinc finger, RAN-binding domain containing 3"	protein-coding
chr18.34669438.+	chr18	34669438	34669439	+	0	NA	"intron (NM_020776, intron 7 of 9)"	AluSx|SINE|Alu	-260259	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr9.90885142.-	chr9	90885142	90885143	-	0	NA	Intergenic	AluJb|SINE|Alu	118155	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr7.12736907.+	chr7	12736907	12736908	+	0	NA	Intergenic	AluSg|SINE|Alu	9996	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr7.55379488.+	chr7	55379488	55379489	+	0	NA	Intergenic	SVA_D|Other|Other	-53653	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr6.150410268.-	chr6	150410268	150410269	-	0	NA	Intergenic	Intergenic	20066	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr22.22550467.+	chr22	22550467	22550468	+	0	NA	Intergenic	Intergenic	-48733	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr5.14460446.-	chr5	14460446	14460447	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121445	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr5.3188307.-	chr5	3188307	3188308	-	0	NA	Intergenic	CpG	-347901	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr12.132389097.+	chr12	132389097	132389098	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9818	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr6.33500268.+	chr6	33500268	33500269	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47802	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr22.22550497.-	chr22	22550497	22550498	-	0	NA	Intergenic	Intergenic	48703	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr20.60623990.+	chr20	60623990	60623991	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16876	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr3.82554736.-	chr3	82554736	82554737	-	0	NA	Intergenic	MER52A|LTR|ERV1	743786	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr12.49857013.+	chr12	49857013	49857014	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	74056	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr9.138065614.-	chr9	138065614	138065615	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7841	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr1.110881112.+	chr1	110881112	110881113	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	681	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr1.109995478.+	chr1	109995478	109995479	+	0	NA	Intergenic	AluY|SINE|Alu	-13622	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr20.60623981.+	chr20	60623981	60623982	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16885	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr11.67351056.-	chr11	67351056	67351057	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	10	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr10.126538122.+	chr10	126538122	126538123	+	0	NA	Intergenic	Intergenic	47768	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr5.1770142.-	chr5	1770142	1770143	-	0	NA	Intergenic	L1MB5|LINE|L1	-29814	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr16.632139.+	chr16	632139	632140	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7218	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr7.64493631.+	chr7	64493631	64493632	+	0	NA	Intergenic	SVA_C|Other|Other	-5101	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr7.30175473.-	chr7	30175473	30175474	-	0	NA	"intron (NM_152793, intron 1 of 2)"	CpG	-921	NM_152793	222166	Hs.200100	NM_152793	ENSG00000180354	C7orf41	Ells1	chromosome 7 open reading frame 41	protein-coding
chr7.74489470.+	chr7	74489470	74489471	+	0	NA	"exon (NM_030798, exon 1 of 11)"	"exon (NM_030798, exon 1 of 11)"	229	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr1.97799070.-	chr1	97799070	97799071	-	0	NA	"intron (NM_000110, intron 16 of 22)"	"intron (NM_000110, intron 16 of 22)"	-237591	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr8.14882361.+	chr8	14882361	14882362	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171342	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr1.55583171.+	chr1	55583171	55583172	+	0	NA	"intron (NM_015306, intron 38 of 67)"	AluYb8|SINE|Alu	78022	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr20.52741109.+	chr20	52741109	52741110	+	0	NA	Intergenic	AluSx1|SINE|Alu	49407	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr13.21766646.-	chr13	21766646	21766647	-	0	NA	Intergenic	AluY|SINE|Alu	15905	NM_145061	221150	Hs.88523	NM_001166017	ENSG00000165480	SKA3	C13orf3|RAMA1	spindle and kinetochore associated complex subunit 3	protein-coding
chr18.77244895.+	chr18	77244895	77244896	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84569	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr20.45935932.+	chr20	45935932	45935933	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11314	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr19.18340240.-	chr19	18340240	18340241	-	0	NA	"intron (NM_000923, intron 2 of 15)"	AluSx1|SINE|Alu	2955	NM_001098818	5143	Hs.132584	NM_000923	ENSG00000105650	PDE4C	DPDE1	"phosphodiesterase 4C, cAMP-specific"	protein-coding
chr6.87949401.-	chr6	87949401	87949402	-	0	NA	"intron (NM_015021, intron 5 of 7)"	SVA_C|Other|Other	82905	NM_020425	57150	Hs.70769	NM_001042493	ENSG00000111850	SMIM8	C6orf162|dJ102H19.2	small integral membrane protein 8	protein-coding
chr16.84212707.-	chr16	84212707	84212708	-	0	NA	"exon (NM_005679, exon 14 of 14)"	"exon (NM_005679, exon 14 of 14)"	-7969	NM_139353	9013	Hs.153022	NM_001243156	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa"	protein-coding
chr1.6132039.+	chr1	6132039	6132040	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25865	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr18.43723422.+	chr18	43723422	43723423	+	0	NA	Intergenic	AluY|SINE|Alu	-30566	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr20.39978517.+	chr20	39978517	39978518	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8957	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr9.16766068.+	chr9	16766068	16766069	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	104718	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr2.213546630.-	chr2	213546630	213546631	-	0	NA	Intergenic	AluSc8|SINE|Alu	143278	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr8.104645091.-	chr8	104645091	104645092	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132115	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr8.99627107.-	chr8	99627107	99627108	-	0	NA	"intron (NM_001256313, intron 4 of 8)"	L1PA2|LINE|L1	-187857	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr6.165205823.+	chr6	165205823	165205824	+	0	NA	Intergenic	AluYb8|SINE|Alu	517288	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr4.1563501.-	chr4	1563501	1563502	-	0	NA	Intergenic	Intergenic	-122217	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr12.105389757.+	chr12	105389757	105389758	+	0	NA	Intergenic	AluY|SINE|Alu	9659	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr7.1592376.-	chr7	1592376	1592377	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	-3690	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr2.156430218.+	chr2	156430218	156430219	+	0	NA	Intergenic	AluYk4|SINE|Alu	759069	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr8.12516941.+	chr8	12516941	12516942	+	0	NA	"non-coding (NR_047662, exon 2 of 9)"	"non-coding (NR_047662, exon 2 of 9)"	6179	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr4.1626790.-	chr4	1626790	1626791	-	0	NA	Intergenic	CpG	-58928	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr5.172159014.-	chr5	172159014	172159015	-	0	NA	Intergenic	Intergenic	-39189	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
chr7.139162651.+	chr7	139162651	139162652	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5806	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr19.45530304.+	chr19	45530304	45530305	+	0	NA	"intron (NM_006509, intron 6 of 10)"	AluY|SINE|Alu	-11994	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr5.2391218.-	chr5	2391218	2391219	-	0	NA	Intergenic	Intergenic	-360551	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr1.155030228.-	chr1	155030228	155030229	-	0	NA	"intron (NR_048578, intron 13 of 22)"	"intron (NR_048578, intron 13 of 22)"	5985	NM_182690	1945	Hs.639422	NM_005227	ENSG00000243364	EFNA4	EFL4|EPLG4|LERK4	ephrin-A4	protein-coding
chr1.33815486.-	chr1	33815486	33815487	-	0	NA	promoter-TSS (NM_004427)	promoter-TSS (NM_004427)	-13	NM_004427	1912	Hs.524271	NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2 (Drosophila)	protein-coding
chr19.50614537.-	chr19	50614537	50614538	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1208	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr1.101786821.+	chr1	101786821	101786822	+	0	NA	Intergenic	AluY|SINE|Alu	19630	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr8.142440420.-	chr8	142440420	142440421	-	0	NA	"intron (NM_032611, intron 4 of 4)"	CpG	-8413	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr16.89034178.+	chr16	89034178	89034179	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9326	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr17.4435099.-	chr17	4435099	4435100	-	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	-23582	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr2.21484594.-	chr2	21484594	21484595	-	0	NA	Intergenic	Intergenic	217649	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr7.5610927.-	chr7	5610927	5610928	-	0	NA	Intergenic	AluSx1|SINE|Alu	21509	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr17.4083378.-	chr17	4083378	4083379	-	0	NA	"intron (NR_047571, intron 15 of 23)"	MER5B|DNA|hAT-Charlie	-36463	NM_001254755	124936	Hs.513871	NM_001254755	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
chr2.43254202.+	chr2	43254202	43254203	+	0	NA	Intergenic	Intergenic	199543	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr2.135476385.-	chr2	135476385	135476386	-	0	NA	"exon (NM_030923, exon 1 of 8)"	"exon (NM_030923, exon 1 of 8)"	-186	NM_030923	81615	Hs.595089	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding
chr1.65547689.-	chr1	65547689	65547690	-	0	NA	Intergenic	AluY|SINE|Alu	23498	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr5.1667725.-	chr5	1667725	1667726	-	0	NA	Intergenic	CpG	33605	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
chr16.1115474.+	chr16	1115474	1115475	+	0	NA	"non-coding (NR_027242, exon 4 of 4)"	"non-coding (NR_027242, exon 4 of 4)"	-7282	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr15.41674361.+	chr15	41674361	41674362	+	0	NA	Intergenic	SVA_F|Other|Other	20297	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr19.58254300.+	chr19	58254300	58254301	+	0	NA	Intergenic	AluSx|SINE|Alu	-3864	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr9.21968323.+	chr9	21968323	21968324	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1185	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr2.208031306.-	chr2	208031306	208031307	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-274	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr11.31560773.-	chr11	31560773	31560774	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29476	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr1.39957532.+	chr1	39957532	39957533	+	0	NA	"5' UTR (NM_181809, exon 1 of 7)"	"5' UTR (NM_181809, exon 1 of 7)"	214	NM_181809	353500	Hs.472497	NM_181809		BMP8A	-	bone morphogenetic protein 8a	protein-coding
chr21.37627708.+	chr21	37627708	37627709	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64779	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr3.26495144.-	chr3	26495144	26495145	-	0	NA	Intergenic	AluY|SINE|Alu	169156	NM_052953	116135	Hs.517868	NM_052953	ENSG00000179796	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
chrX.93693258.+	chrX	93693258	93693259	+	0	NA	Intergenic	AluY|SINE|Alu	764246	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chr5.172159006.-	chr5	172159006	172159007	-	0	NA	Intergenic	Intergenic	-39197	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
chr16.375231.+	chr16	375231	375232	+	0	NA	"intron (NM_003502, intron 2 of 10)"	CpG	27445	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr20.61885478.-	chr20	61885478	61885479	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-148	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr15.41687857.+	chr15	41687857	41687858	+	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	6801	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr15.92396107.+	chr15	92396107	92396108	+	0	NA	promoter-TSS (NM_013272)	promoter-TSS (NM_013272)	-831	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr16.77246832.+	chr16	77246832	77246833	+	0	NA	"3' UTR (NM_001129979, exon 11 of 11)"	"3' UTR (NM_001129979, exon 11 of 11)"	13483	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr1.224419918.-	chr1	224419918	224419919	-	0	NA	"intron (NM_001243146, intron 19 of 20)"	AluY|SINE|Alu	-24925	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2	microRNA 320b-2	miscRNA
chr7.2565952.-	chr7	2565952	2565953	-	0	NA	promoter-TSS (NR_039791)	promoter-TSS (NR_039791)	756	NR_039791	100616116		NR_039791		MIR4648	-	microRNA 4648	miscRNA
chr5.168556289.+	chr5	168556289	168556290	+	0	NA	"intron (NM_003062, intron 4 of 35)"	AluSx1|SINE|Alu	134409	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	miscRNA
chr6.8388450.+	chr6	8388450	8388451	+	0	NA	Intergenic	LTR9|LTR|ERV1	47344	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr2.10424721.-	chr2	10424721	10424722	-	0	NA	Intergenic	Intergenic	18309	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr16.58534969.-	chr16	58534969	58534970	-	0	NA	"exon (NM_001242833, exon 2 of 15)"	"exon (NM_001242833, exon 2 of 15)"	-922	NM_001242836	65009	Hs.322430	NM_001130487	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
chr19.31841650.-	chr19	31841650	31841651	-	0	NA	Intergenic	CpG-13437	1460	NM_020856	57616	Hs.278436	NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
chr9.6608161.+	chr9	6608161	6608162	+	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	37531	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr15.41687836.-	chr15	41687836	41687837	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6822	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr19.38836144.-	chr19	38836144	38836145	-	0	NA	"intron (NM_021185, intron 6 of 28)"	"intron (NM_021185, intron 6 of 28)"	-9701	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr7.64198986.+	chr7	64198986	64198987	+	0	NA	Intergenic	SVA_D|Other|Other	-55780	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr1.40260007.+	chr1	40260007	40260008	+	0	NA	Intergenic	AluY|SINE|Alu	-5474	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr16.55553231.+	chr16	55553231	55553232	+	0	NA	"intron (NM_017839, intron 1 of 13)"	AluY|SINE|Alu	10318	NM_017839	54947	Hs.460857	NM_017839	ENSG00000087253	LPCAT2	AYTL1|LysoPAFAT	lysophosphatidylcholine acyltransferase 2	protein-coding
chr3.160673499.+	chr3	160673499	160673500	+	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	149184	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr5.16561390.-	chr5	16561390	16561391	-	0	NA	"intron (NM_001034850, intron 3 of 8)"	AluY|SINE|Alu	52283	NM_019000	54463	Hs.744032	NM_001034850	ENSG00000154153	FAM134B	JK-1|JK1	"family with sequence similarity 134, member B"	protein-coding
chr8.54998362.+	chr8	54998362	54998363	+	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	16215	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr9.16855824.-	chr9	16855824	16855825	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14962	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr13.50297695.+	chr13	50297695	50297696	+	0	NA	"intron (NM_002267, intron 7 of 16)"	AluSg7|SINE|Alu	-32072	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr2.131551983.+	chr2	131551983	131551984	+	0	NA	Intergenic	AluY|SINE|Alu	38119	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr2.130584781.+	chr2	130584781	130584782	+	0	NA	Intergenic	Intergenic	107109	NR_026740	389033	Hs.380682	NR_026740	ENSG00000214100	LOC389033	-	placenta-specific 9 pseudogene	pseudo
chr14.105158914.+	chr14	105158914	105158915	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2971	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr7.56109593.+	chr7	56109593	56109594	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9675	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr7.5572231.+	chr7	5572231	5572232	+	0	NA	Intergenic	Intergenic	-1999	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr8.3501048.+	chr8	3501048	3501049	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351280	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr4.70608371.+	chr4	70608371	70608372	+	0	NA	"intron (NM_014465, intron 4 of 7)"	MER52D|LTR|ERV1	18059	NM_014465	27284	Hs.129742	NM_014465	ENSG00000173597	SULT1B1	ST1B1|ST1B2|SULT1B2	"sulfotransferase family, cytosolic, 1B, member 1"	protein-coding
chr14.103988590.-	chr14	103988590	103988591	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-606	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr12.6167272.-	chr12	6167272	6167273	-	0	NA	"intron (NM_000552, intron 13 of 51)"	"intron (NM_000552, intron 13 of 51)"	-66564	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
chr19.267121.+	chr19	267121	267122	+	0	NA	Intergenic	CpG	24048	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr4.123843505.-	chr4	123843505	123843506	-	0	NA	promoter-TSS (NM_145207)	promoter-TSS (NM_145207)	-256	NM_007083	11162	Hs.558459	NM_007083	ENSG00000170917	NUDT6	ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding
chr8.98771764.-	chr8	98771764	98771765	-	0	NA	Intergenic	AluSq10|SINE|Alu	16045	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr19.33554663.-	chr19	33554663	33554664	-	0	NA	"intron (NM_033103, intron 1 of 14)"	"intron (NM_033103, intron 1 of 14)"	-1161	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr2.213402713.+	chr2	213402713	213402714	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	639	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr16.73116266.+	chr16	73116266	73116267	+	0	NA	Intergenic	AluY|SINE|Alu	-9982	NR_027756	283902	Hs.382776	NM_001101347	ENSG00000260880	HTA	-	uncharacterized LOC283902	miscRNA
chr3.196619082.-	chr3	196619082	196619083	-	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	-24355	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr3.102973881.-	chr3	102973881	102973882	-	0	NA	Intergenic	SVA_D|Other|Other	-820022	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr8.143373428.+	chr8	143373428	143373429	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93711	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr12.92086161.+	chr12	92086161	92086162	+	0	NA	Intergenic	AluSx3|SINE|Alu	449328	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr17.37009822.-	chr17	37009822	37009823	-	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	-231	NM_000978	9349	Hs.406300	NM_000978		RPL23	L23|rpL17	ribosomal protein L23	protein-coding
chr2.27588387.-	chr2	27588387	27588388	-	0	NA	"intron (NM_015636, intron 11 of 12)"	AluY|SINE|Alu	-4532	NM_172195	8890	Hs.169474	NM_001034116	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta	"eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa"	protein-coding
chr15.53082928.-	chr15	53082928	53082929	-	0	NA	promoter-TSS (NM_004498)	promoter-TSS (NM_004498)	719	NM_004498	3175	Hs.658573	NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
chr2.90481156.-	chr2	90481156	90481157	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1366819	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr9.16855815.-	chr9	16855815	16855816	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14971	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr3.179493591.-	chr3	179493591	179493592	-	0	NA	"intron (NM_003940, intron 19 of 20)"	LTR12C|LTR|ERV1	-122658	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
chr1.85358784.-	chr1	85358784	85358785	-	0	NA	"5' UTR (NM_012152, exon 1 of 3)"	"5' UTR (NM_012152, exon 1 of 3)"	-112	NM_012152	23566	Hs.674915	NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
chr6.372925.+	chr6	372925	372926	+	0	NA	Intergenic	Intergenic	-18814	NR_046000	3662	Hs.401013	NM_001195286	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
chr3.44743393.-	chr3	44743393	44743394	-	0	NA	Intergenic	AluY|SINE|Alu	10742	NM_001134442	91392	Hs.224843	NM_001134440	ENSG00000196653	ZNF502	-	zinc finger protein 502	protein-coding
chr14.93564796.+	chr14	93564796	93564797	+	0	NA	"intron (NM_014216, intron 2 of 10)"	AluY|SINE|Alu	17467	NM_001142593	3705	Hs.308122	NM_001142593	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
chr9.105850361.-	chr9	105850361	105850362	-	0	NA	Intergenic	AluYc|SINE|Alu	-92768	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr15.91370843.-	chr15	91370843	91370844	-	0	NA	Intergenic	AluSz|SINE|Alu	41042	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr11.578871.-	chr11	578871	578872	-	0	NA	"intron (NM_020901, intron 1 of 17)"	AluSx|SINE|Alu	-2388	NM_020901	57661	Hs.325838	NM_020901	ENSG00000070047	PHRF1	RNF221	PHD and ring finger domains 1	protein-coding
chr9.138065642.+	chr9	138065642	138065643	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7813	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr17.3317632.+	chr17	3317632	3317633	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6230	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr7.3124619.+	chr7	3124619	3124620	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41110	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr7.77452621.-	chr7	77452621	77452622	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16826	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr6.2221735.+	chr6	2221735	2221736	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24133	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr8.14459414.-	chr8	14459414	14459415	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251605	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr6.79187848.+	chr6	79187848	79187849	+	0	NA	Intergenic	AluY|SINE|Alu	-389413	NM_001010844	134728	Hs.656212	NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
chr12.53373488.-	chr12	53373488	53373489	-	0	NA	Intergenic	AluSx1|SINE|Alu	26574	NM_001417	1975	Hs.702041	NM_018507	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
chr4.1004025.+	chr4	1004025	1004026	+	0	NA	Intergenic	CpG	-1585	NM_001004356	53834	Hs.193326	NM_001004356	ENSG00000127418	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
chr3.53225177.-	chr3	53225177	53225178	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29954	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr2.232277201.-	chr2	232277201	232277202	-	0	NA	Intergenic	Intergenic	-16866	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr2.121244083.-	chr2	121244083	121244084	-	0	NA	Intergenic	Intergenic	20158	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr11.100596579.-	chr11	100596579	100596580	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38172	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chrX.133565022.+	chrX	133565022	133565023	+	0	NA	Intergenic	AluSp|SINE|Alu	-29153	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr6.165205832.+	chr6	165205832	165205833	+	0	NA	Intergenic	AluYb8|SINE|Alu	517279	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chrX.141491530.+	chrX	141491530	141491531	+	0	NA	Intergenic	AluY|SINE|Alu	-198454	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr3.128161113.+	chr3	128161113	128161114	+	0	NA	Intergenic	Intergenic	-21324	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr3.188566622.+	chr3	188566622	188566623	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323141	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr1.54953514.+	chr1	54953514	54953515	+	0	NA	Intergenic	Intergenic	-60293	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr13.56400592.-	chr13	56400592	56400593	-	0	NA	Intergenic	AluY|SINE|Alu	-652003	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr20.18441247.-	chr20	18441247	18441248	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6582	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr17.11229415.-	chr17	11229415	11229416	-	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc8|SINE|Alu	-84675	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr10.64708119.+	chr10	64708119	64708120	+	0	NA	Intergenic	SVA_E|Other|Other	-129192	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr17.77198170.+	chr17	77198170	77198171	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	127151	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr1.153214235.-	chr1	153214235	153214236	-	0	NA	Intergenic	AluY|SINE|Alu	17944	NM_000427	4014	Hs.251680	NM_000427	ENSG00000203782	LOR	-	loricrin	protein-coding
chr4.4878251.-	chr4	4878251	4878252	-	0	NA	Intergenic	Intergenic	-16859	NM_002448	4487	Hs.424414	NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
chr7.394757.+	chr7	394757	394758	+	0	NA	Intergenic	Intergenic	-24634	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr20.60672345.+	chr20	60672345	60672346	+	0	NA	Intergenic	Intergenic	-25172	NM_144703	149986	Hs.105379	NM_144703	ENSG00000149657	LSM14B	C20orf40|FAM61B|LSM13|RAP55B|bA11M20.3	"LSM14B, SCD6 homolog B (S. cerevisiae)"	protein-coding
chr17.74920497.-	chr17	74920497	74920498	-	0	NA	"intron (NM_001199172, intron 8 of 16)"	"intron (NM_001199172, intron 8 of 16)"	-51768	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr19.45678449.-	chr19	45678449	45678450	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3052	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr11.89400850.+	chr11	89400850	89400851	+	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	8385	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr18.24748284.-	chr18	24748284	24748285	-	0	NA	"intron (NM_001256316, intron 1 of 4)"	AluY|SINE|Alu	-17018	NM_001256316	83539	Hs.706552	NM_001256316	ENSG00000154080	CHST9	GALNAC4ST-2	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chr8.144512812.-	chr8	144512812	144512813	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	210	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr1.10727934.+	chr1	10727934	10727935	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128799	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr9.121723254.+	chr9	121723254	121723255	+	0	NA	Intergenic	AluY|SINE|Alu	408485	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr5.140215693.+	chr5	140215693	140215694	+	0	NA	"exon (NM_018910, exon 1 of 4)"	"exon (NM_018910, exon 1 of 4)"	1724	NM_031852	56141	Hs.199343	NM_018910	ENSG00000204963	PCDHA7	CNR4|CNRN4|CNRS4|CRNR4|PCDH-ALPHA7	protocadherin alpha 7	protein-coding
chr17.2462099.+	chr17	2462099	2462100	+	0	NA	Intergenic	AluYf5|SINE|Alu	-34824	NM_000430	5048	Hs.77318	NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|PAFAH	"platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)"	protein-coding
chr14.101892668.+	chr14	101892668	101892669	+	0	NA	Intergenic	AluY|SINE|Alu	129345	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr3.122695611.-	chr3	122695611	122695612	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	630	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr12.57177804.+	chr12	57177804	57177805	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20696	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr20.31162587.+	chr20	31162587	31162588	+	0	NA	"intron (NM_001256798, intron 1 of 10)"	"intron (NM_001256798, intron 1 of 10)"	10288	NM_001256798	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr14.103988558.+	chr14	103988558	103988559	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	638	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr2.211494534.-	chr2	211494534	211494535	-	0	NA	"intron (NM_001122634, intron 11 of 27)"	AluY|SINE|Alu	-12239	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	miscRNA
chr17.4453847.+	chr17	4453847	4453848	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4834	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr7.99630223.-	chr7	99630223	99630224	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	-17004	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr8.86544451.-	chr8	86544451	86544452	-	0	NA	Intergenic	AluSp|SINE|Alu	-23454	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr22.18935676.+	chr22	18935676	18935677	+	0	NA	Intergenic	Intergenic	-11610	NM_016335	5625	Hs.517352	NM_001195226	ENSG00000100033	PRODH	HSPOX2|PIG6|POX|PRODH1|PRODH2|TP53I6	proline dehydrogenase (oxidase) 1	protein-coding
chr21.47403579.-	chr21	47403579	47403580	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1916	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr18.77627537.+	chr18	77627537	77627538	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3869	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr18.55621042.+	chr18	55621042	55621043	+	0	NA	Intergenic	AluSc8|SINE|Alu	-90568	NM_015277	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr2.198058500.-	chr2	198058500	198058501	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117021	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr17.8061030.+	chr17	8061030	8061031	+	0	NA	Intergenic	AluY|SINE|Alu	5263	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr17.11197455.+	chr17	11197455	11197456	+	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc|SINE|Alu	52715	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr22.43238140.-	chr22	43238140	43238141	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15268	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr2.129080714.+	chr2	129080714	129080715	+	0	NA	Intergenic	Intergenic	-4543	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr3.102973959.-	chr3	102973959	102973960	-	0	NA	Intergenic	SVA_D|Other|Other	-820100	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr5.16561388.-	chr5	16561388	16561389	-	0	NA	"intron (NM_001034850, intron 3 of 8)"	AluY|SINE|Alu	52281	NM_019000	54463	Hs.744032	NM_001034850	ENSG00000154153	FAM134B	JK-1|JK1	"family with sequence similarity 134, member B"	protein-coding
chr16.8974144.+	chr16	8974144	8974145	+	0	NA	Intergenic	Intergenic	-11281	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr10.14719535.-	chr10	14719535	14719536	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97361	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr2.38191062.-	chr2	38191062	38191063	-	0	NA	"intron (NM_144713, intron 2 of 10)"	SVA_C|Other|Other	-13466	NM_144713	151393	Hs.591566	NM_001170791	ENSG00000115841	RMDN2	FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
chr15.100514139.-	chr15	100514139	100514140	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167007	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr3.49047706.-	chr3	49047706	49047707	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3069	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr10.118500937.-	chr10	118500937	118500938	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1148	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr5.694014.+	chr5	694014	694015	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-504	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr19.4141906.-	chr19	4141906	4141907	-	0	NA	Intergenic	AluY|SINE|Alu	11692	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr20.1317926.+	chr20	1317926	1317927	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-8047	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr15.63892637.+	chr15	63892637	63892638	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	389	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr17.66193686.-	chr17	66193686	66193687	-	0	NA	Intergenic	CpG	1115	NR_027283	440461	Hs.661522	NR_027283		LOC440461	-	Rho GTPase activating protein 27 pseudogene	pseudo
chr2.92027301.+	chr2	92027301	92027302	+	0	NA	Intergenic	AluY|SINE|Alu	63933	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
chr19.10041260.-	chr19	10041260	10041261	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5810	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr3.31533149.+	chr3	31533149	31533150	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41342	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr12.53894898.+	chr12	53894898	53894899	+	0	NA	promoter-TSS (NM_134324)	promoter-TSS (NM_134324)	193	NM_134323	6895	Hs.326	NM_004178	ENSG00000139546	TARBP2	LOQS|TRBP|TRBP1|TRBP2	TAR (HIV-1) RNA binding protein 2	protein-coding
chr9.83515.+	chr9	83515	83516	+	0	NA	Intergenic	SVA_E|Other|Other	34902	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr20.61766385.-	chr20	61766385	61766386	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	32714	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr6.25384334.+	chr6	25384334	25384335	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104678	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr16.4051449.-	chr16	4051449	4051450	-	0	NA	"intron (NM_001116, intron 3 of 10)"	L1MD3|LINE|L1	-114737	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr15.92396112.+	chr15	92396112	92396113	+	0	NA	promoter-TSS (NM_013272)	promoter-TSS (NM_013272)	-826	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr21.47403595.+	chr21	47403595	47403596	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1932	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr22.31988898.+	chr22	31988898	31988899	+	0	NA	"intron (NM_001258326, intron 13 of 30)"	SVA_F|Other|Other	37912	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
chr1.244556974.+	chr1	244556974	244556975	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	41037	NM_001276348	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
chr4.77348127.+	chr4	77348127	77348128	+	0	NA	Intergenic	AluY|SINE|Alu	-8126	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr11.1266506.-	chr11	1266506	1266507	-	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	-22211	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr11.59284466.+	chr11	59284466	59284467	+	0	NA	Intergenic	AluY|SINE|Alu	2080	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	"olfactory receptor, family 4, subfamily D, member 9"	protein-coding
chr9.139417517.+	chr9	139417517	139417518	+	0	NA	"exon (NM_017617, exon 4 of 34)"	"exon (NM_017617, exon 4 of 34)"	-3439	NR_039820	100616242		NR_039820		MIR4673	-	microRNA 4673	miscRNA
chr12.8961499.-	chr12	8961499	8961500	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	13651	NM_144670	144568	Hs.620532	NM_144670	ENSG00000166535	A2ML1	CPAMD9	alpha-2-macroglobulin-like 1	protein-coding
chr9.18314886.-	chr9	18314886	18314887	-	0	NA	Intergenic	AluY|SINE|Alu	159193	NM_052866	92949	Hs.741483	NM_139238	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS-like 1	protein-coding
chr1.97029358.-	chr1	97029358	97029359	-	0	NA	Intergenic	AluSp|SINE|Alu	157817	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chrX.125299945.-	chrX	125299945	125299946	-	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	-135	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr11.16894120.-	chr11	16894120	16894121	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133972	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr5.178885012.+	chr5	178885012	178885013	+	0	NA	Intergenic	AluY|SINE|Alu	-92550	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chr3.44743359.-	chr3	44743359	44743360	-	0	NA	Intergenic	AluY|SINE|Alu	10776	NM_001134442	91392	Hs.224843	NM_001134440	ENSG00000196653	ZNF502	-	zinc finger protein 502	protein-coding
chr19.36319461.+	chr19	36319461	36319462	+	0	NA	"intron (NM_004646, intron 28 of 28)"	AluSx3|SINE|Alu	-15260	NM_021232	58510	Hs.515366	NM_021232	ENSG00000250799	PRODH2	HSPOX1	proline dehydrogenase (oxidase) 2	protein-coding
chr11.62340964.-	chr11	62340964	62340965	-	0	NA	"intron (NM_001404, intron 1 of 9)"	"intron (NM_001404, intron 1 of 9)"	-496	NM_001404	1937	Hs.444467	NM_001404	ENSG00000254772	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
chr2.242143579.+	chr2	242143579	242143580	+	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	15655	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr5.178658002.+	chr5	178658002	178658003	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114429	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr9.121440469.-	chr9	121440469	121440470	-	0	NA	Intergenic	SVA_B|Other|Other	-691270	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr19.41641928.+	chr19	41641928	41641929	+	0	NA	Intergenic	CpG	21575	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr2.237068290.-	chr2	237068290	237068291	-	0	NA	Intergenic	CpG	-8362	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr17.76799756.-	chr17	76799756	76799757	-	0	NA	"exon (NM_025090, exon 16 of 20)"	"exon (NM_025090, exon 16 of 20)"	21380	NM_004762	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
chrM.871.+	chrM	871	872	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr11.347152.-	chr11	347152	347153	-	0	NA	Intergenic	AluY|SINE|Alu	22643	NM_178537	338707	Hs.148074	NM_178537	ENSG00000182272	B4GALNT4	-	"beta-1,4-N-acetyl-galactosaminyl transferase 4"	protein-coding
chr7.108574014.-	chr7	108574014	108574015	-	0	NA	Intergenic	AluY|SINE|Alu	49377	NM_001024607	154907	Hs.638689	NM_001024607	ENSG00000205174	C7orf66	-	chromosome 7 open reading frame 66	protein-coding
chrX.40029661.-	chrX	40029661	40029662	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6921	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr6.24720978.+	chr6	24720978	24720979	+	0	NA	Intergenic	CpG	-1575	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr3.164119684.-	chr3	164119684	164119685	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676599	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr16.88696978.-	chr16	88696978	88696979	-	0	NA	"exon (NM_144604, exon 17 of 18)"	"exon (NM_144604, exon 17 of 18)"	8023	NM_013278	27189	Hs.278911	NM_013278	ENSG00000124391	IL17C	CX2|IL-17C|IL-21	interleukin 17C	protein-coding
chr19.4141931.-	chr19	4141931	4141932	-	0	NA	Intergenic	AluY|SINE|Alu	11667	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr10.126538770.-	chr10	126538770	126538771	-	0	NA	Intergenic	AluSx|SINE|Alu	-48416	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr17.80376637.+	chr17	80376637	80376638	+	0	NA	promoter-TSS (NM_024648)	promoter-TSS (NM_024648)	-124	NM_175902	79701	Hs.187505	NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
chr7.1570561.+	chr7	1570561	1570562	+	0	NA	"intron (NM_002360, intron 1 of 2)"	CpG	193	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr11.3013222.-	chr11	3013222	3013223	-	0	NA	"intron (NM_005969, intron 1 of 15)"	CpG	-385	NM_005969	4676	Hs.731784	NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1-like 4	protein-coding
chr14.103988603.-	chr14	103988603	103988604	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-593	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr9.139477850.-	chr9	139477850	139477851	-	0	NA	Intergenic	Intergenic	37139	NR_039821	100616301		NR_039821	ENSG00000265181	MIR4674	-	microRNA 4674	miscRNA
chr15.74425229.-	chr15	74425229	74425230	-	0	NA	"exon (NM_001130136, exon 4 of 4)"	"exon (NM_001130136, exon 4 of 4)"	-2486	NM_020851	57611	Hs.254775	NM_001130136	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding
chr11.69189600.-	chr11	69189600	69189601	-	0	NA	Intergenic	Intergenic	-127978	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr8.94702780.-	chr8	94702780	94702781	-	0	NA	"intron (NR_033858, intron 1 of 10)"	AluSq2|SINE|Alu	-9881	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	miscRNA
chr3.9398182.-	chr3	9398182	9398183	-	0	NA	Intergenic	AluY|SINE|Alu	6535	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr17.4805155.-	chr17	4805155	4805156	-	0	NA	"3' UTR (NM_001145536, exon 3 of 3)"	"3' UTR (NM_001145536, exon 3 of 3)"	-1214	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	"cholinergic receptor, nicotinic, epsilon (muscle)"	protein-coding
chr11.18743347.+	chr11	18743347	18743348	+	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	4430	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr8.22594670.-	chr8	22594670	22594671	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43855	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr16.58258035.-	chr16	58258035	58258036	-	0	NA	Intergenic	AluSq2|SINE|Alu	25805	NM_001142302	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr14.64299488.+	chr14	64299488	64299489	+	0	NA	Intergenic	AluJb|SINE|Alu	-20195	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr3.102974033.+	chr3	102974033	102974034	+	0	NA	Intergenic	SVA_D|Other|Other	820174	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr1.27876454.-	chr1	27876454	27876455	-	0	NA	"exon (NM_001029882, exon 6 of 7)"	"exon (NM_001029882, exon 6 of 7)"	-53689	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	CL23945|DJ159A19.3|RP1-159A19.1	"AT hook, DNA binding motif, containing 1"	protein-coding
chrX.81762768.+	chrX	81762768	81762769	+	0	NA	Intergenic	AluY|SINE|Alu	-1000501	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr3.112807990.+	chr3	112807990	112807991	+	0	NA	Intergenic	AluYc|SINE|Alu	-69435	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr16.11746174.+	chr16	11746174	11746175	+	0	NA	Intergenic	AluSg7|SINE|Alu	-16115	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chrX.33133786.+	chrX	33133786	33133787	+	0	NA	"intron (NM_000109, intron 1 of 78)"	AluY|SINE|Alu	12758	NM_004010	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr8.1312672.-	chr8	1312672	1312673	-	0	NA	Intergenic	Intergenic	61845	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr7.51384051.-	chr7	51384051	51384052	-	0	NA	"intron (NM_015198, intron 1 of 12)"	CpG	-464	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
chr20.32757625.+	chr20	32757625	32757626	+	0	NA	Intergenic	AluSc8|SINE|Alu	-57540	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr7.3828936.+	chr7	3828936	3828937	+	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	-340381	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr5.178884997.+	chr5	178884997	178884998	+	0	NA	Intergenic	AluY|SINE|Alu	-92565	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chr2.32250856.-	chr2	32250856	32250857	-	0	NA	"intron (NM_032574, intron 4 of 4)"	"intron (NM_032574, intron 4 of 4)"	-13988	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr14.106358759.+	chr14	106358759	106358760	+	0	NA	Intergenic	Intergenic	-25079	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr3.147137295.-	chr3	147137295	147137296	-	0	NA	Intergenic	CpG	-10114	NM_003412	7545	Hs.647962	NM_003412	ENSG00000152977	ZIC1	ZIC|ZNF201	Zic family member 1	protein-coding
chr3.154042095.-	chr3	154042095	154042096	-	0	NA	"exon (NM_001114397, exon 1 of 25)"	"exon (NM_001114397, exon 1 of 25)"	-191	NM_020865	170506	Hs.446270	NM_001114397	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding
chr18.5524273.+	chr18	5524273	5524274	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19713	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr19.10420455.-	chr19	10420455	10420456	-	0	NA	promoter-TSS (NM_001103167)	promoter-TSS (NM_001103167)	222	NM_001103167	100125288	Hs.709296	NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	"zinc finger, GATA-like protein 1"	protein-coding
chr17.12456673.-	chr17	12456673	12456674	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3388	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr9.85673189.-	chr9	85673189	85673190	-	0	NA	"intron (NM_152573, intron 1 of 16)"	AluY|SINE|Alu	-4854	NM_152573	158158	Hs.129136	NM_152573		RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
chr13.56400621.-	chr13	56400621	56400622	-	0	NA	Intergenic	AluY|SINE|Alu	-652032	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr11.64774854.+	chr11	64774854	64774855	+	0	NA	Intergenic	AluSz|SINE|Alu	-6731	NM_001667	402	Hs.502836	NM_001199745	ENSG00000213465	ARL2	ARFL2	ADP-ribosylation factor-like 2	protein-coding
chr10.126314105.-	chr10	126314105	126314106	-	0	NA	"intron (NM_014661, intron 4 of 4)"	"intron (NM_014661, intron 4 of 4)"	-118825	NM_014661	9679	Hs.129195	NM_014661	ENSG00000189319	FAM53B	KIAA0140|RP11-12J10.2|bA12J10.2	"family with sequence similarity 53, member B"	protein-coding
chr12.124687343.+	chr12	124687343	124687344	+	0	NA	"intron (NM_001204299, intron 3 of 4)"	AluSx1|SINE|Alu	-86367	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	FAM101A	-	"family with sequence similarity 101, member A"	protein-coding
chr4.183981850.-	chr4	183981850	183981851	-	0	NA	Intergenic	AluJb|SINE|Alu	-23032	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	"family with sequence similarity 92, member A3"	pseudo
chr17.7183171.-	chr17	7183171	7183172	-	0	NA	Intergenic	AluSx|SINE|Alu	1883	NM_001042	6517	Hs.380691	NM_001042	ENSG00000181856	SLC2A4	GLUT4	"solute carrier family 2 (facilitated glucose transporter), member 4"	protein-coding
chr10.102414590.-	chr10	102414590	102414591	-	0	NA	Intergenic	CpG	90878	NM_003988	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	PAPRS	paired box 2	protein-coding
chr1.183892743.+	chr1	183892743	183892744	+	0	NA	"intron (NM_015149, intron 18 of 18)"	MIRc|SINE|MIR	114120	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr9.139420019.+	chr9	139420019	139420020	+	0	NA	"intron (NM_017617, intron 2 of 33)"	"intron (NM_017617, intron 2 of 33)"	-5941	NR_039820	100616242		NR_039820		MIR4673	-	microRNA 4673	miscRNA
chr16.88257881.+	chr16	88257881	88257882	+	0	NA	Intergenic	Intergenic	-235998	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr15.20462484.-	chr15	20462484	20462485	-	0	NA	Intergenic	Intergenic	25513	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chrX.153657093.-	chrX	153657093	153657094	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-115	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr11.101100748.-	chr11	101100748	101100749	-	0	NA	Intergenic	AluSx|SINE|Alu	100204	NM_000926	5241	Hs.742403	NM_000926	ENSG00000082175	PGR	NR3C3|PR	progesterone receptor	protein-coding
chr8.52446927.+	chr8	52446927	52446928	+	0	NA	"intron (NM_144651, intron 4 of 22)"	SVA_F|Other|Other	275078	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr9.135947036.-	chr9	135947036	135947037	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9671	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr2.237068252.+	chr2	237068252	237068253	+	0	NA	Intergenic	CpG	8400	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.39016624.-	chr2	39016624	39016625	-	0	NA	Intergenic	AluY|SINE|Alu	-11297	NM_024775	79833	Hs.143818	NM_024775		GEMIN6	-	gem (nuclear organelle) associated protein 6	protein-coding
chr1.79749464.+	chr1	79749464	79749465	+	0	NA	Intergenic	AluSx|SINE|Alu	-276969	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr16.15528767.-	chr16	15528767	15528768	-	0	NA	"intron (NM_033201, intron 1 of 5)"	CpG	-442	NM_033201	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
chr14.101892574.+	chr14	101892574	101892575	+	0	NA	Intergenic	AluY|SINE|Alu	129439	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr6.55775068.-	chr6	55775068	55775069	-	0	NA	Intergenic	SVA_D|Other|Other	34693	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr17.4453846.+	chr17	4453846	4453847	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4835	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr10.131769180.+	chr10	131769180	131769181	+	0	NA	Intergenic	CpG-3433	-7089	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr17.30863327.+	chr17	30863327	30863328	+	0	NA	"intron (NM_015194, intron 21 of 21)"	AluSz|SINE|Alu	49222	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	"cyclin-dependent kinase 5, regulatory subunit 1 (p35)"	protein-coding
chr8.26148326.-	chr8	26148326	26148327	-	0	NA	promoter-TSS (NM_002717)	promoter-TSS (NM_002717)	681	NM_002717	5520	Hs.146339	NM_001177591	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	"protein phosphatase 2, regulatory subunit B, alpha"	protein-coding
chr3.141771259.-	chr3	141771259	141771260	-	0	NA	"intron (NM_001178139, intron 3 of 12)"	AluY|SINE|Alu	23752	NM_006286	7029	Hs.379018	NM_001178138	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2 (E2F dimerization partner 2)	protein-coding
chr4.1358136.-	chr4	1358136	1358137	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17032	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr20.33104528.+	chr20	33104528	33104529	+	0	NA	"intron (NM_014183, intron 1 of 3)"	CpG	324	NM_014183	83658	Hs.593920	NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	"dynein, light chain, roadblock-type 1"	protein-coding
chr14.64299614.-	chr14	64299614	64299615	-	0	NA	Intergenic	AluJb|SINE|Alu	20069	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr4.148667064.-	chr4	148667064	148667065	-	0	NA	"intron (NM_024605, intron 1 of 22)"	AluSx3|SINE|Alu	-13611	NM_024605	79658	Hs.368631	NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
chr6.31211963.+	chr6	31211963	31211964	+	0	NA	Intergenic	SVA_F|Other|Other	27950	NM_001243042	3107	Hs.743218	NM_001243042	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLC-C|PSORS1	"major histocompatibility complex, class I, C"	protein-coding
chr18.68698999.-	chr18	68698999	68699000	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-547193	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr11.64661100.-	chr11	64661100	64661101	-	0	NA	TTS (NM_015104)	TTS (NM_015104)	2189	NR_029829	406970		NR_029829	ENSG00000207596	MIR194-2	MIRN194-2	microRNA 194-2	miscRNA
chr7.5355987.+	chr7	5355987	5355988	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33426	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr18.33543850.+	chr18	33543850	33543851	+	0	NA	Intergenic	AluY|SINE|Alu	-8738	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr20.43342017.-	chr20	43342017	43342018	-	0	NA	Intergenic	AluSx|SINE|Alu	1868	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr3.8721154.-	chr3	8721154	8721155	-	0	NA	Intergenic	Intergenic	27390	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr18.31802647.+	chr18	31802647	31802648	+	0	NA	promoter-TSS (NM_001198547)	promoter-TSS (NM_001198547)	-213	NR_036752	8715	Hs.514795	NM_001198546	ENSG00000101746	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
chrX.29649794.+	chrX	29649794	29649795	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-583881	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr8.124780319.-	chr8	124780319	124780320	-	0	NA	promoter-TSS (NM_144963)	promoter-TSS (NM_144963)	563	NM_144963	157769	Hs.459174	NM_144963	ENSG00000176853	FAM91A1	-	"family with sequence similarity 91, member A1"	protein-coding
chr12.33592867.+	chr12	33592867	33592868	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-113	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr20.60999660.-	chr20	60999660	60999661	-	0	NA	"intron (NM_080833, intron 1 of 13)"	"intron (NM_080833, intron 1 of 13)"	-2969	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr7.76085119.+	chr7	76085119	76085120	+	0	NA	Intergenic	Intergenic	-5853	NM_001102594	113878	Hs.187058	NM_001102594	ENSG00000091073	DTX2	RNF58	deltex homolog 2 (Drosophila)	protein-coding
chr19.45660341.+	chr19	45660341	45660342	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3067	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr9.19088598.+	chr9	19088598	19088599	+	0	NA	"intron (NM_001270890, intron 5 of 16)"	AluSx1|SINE|Alu	14342	NM_017645	54801	Hs.533468	NM_001270890	ENSG00000147874	HAUS6	Dgt6|FAM29A	"HAUS augmin-like complex, subunit 6"	protein-coding
chrX.152916299.-	chrX	152916299	152916300	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8402	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr7.22130180.+	chr7	22130180	22130181	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-144638	NM_001127371	55536	Hs.744069	NM_001127370	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
chr4.166248511.+	chr4	166248511	166248512	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-307	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.11751533.+	chr1	11751533	11751534	+	0	NA	promoter-TSS (NM_198545)	promoter-TSS (NM_198545)	145	NM_001127325	10459	Hs.19400	NM_001127325	ENSG00000116670	MAD2L2	MAD2B|POLZ2|REV7	MAD2 mitotic arrest deficient-like 2 (yeast)	protein-coding
chr20.13660623.+	chr20	13660623	13660624	+	0	NA	Intergenic	AluY|SINE|Alu	-41040	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr9.1433374.-	chr9	1433374	1433375	-	0	NA	Intergenic	AluSc|SINE|Alu	-382754	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr16.4537729.-	chr16	4537729	4537730	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8130	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr11.3224542.-	chr11	3224542	3224543	-	0	NA	Intergenic	CpG	15020	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr9.8858118.+	chr9	8858118	8858119	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124172	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.10424808.+	chr2	10424808	10424809	+	0	NA	Intergenic	Intergenic	-18222	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chrM.6448.+	chrM	6448	6449	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.54775785.+	chr1	54775785	54775786	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96194	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr3.133292598.-	chr3	133292598	133292599	-	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	-164	NM_017548	55573	Hs.518265	NM_001134422	ENSG00000091527	CDV3	H41	CDV3 homolog (mouse)	protein-coding
chr21.31598691.+	chr21	31598691	31598692	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10222	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr6.88090588.-	chr6	88090588	88090589	-	0	NA	Intergenic	AluJb|SINE|Alu	16254	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr3.45348417.+	chr3	45348417	45348418	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80603	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr18.11959893.+	chr18	11959893	11959894	+	0	NA	Intergenic	SVA_D|Other|Other	-21534	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr5.12186596.+	chr5	12186596	12186597	+	0	NA	Intergenic	AluYa5|SINE|Alu	-282486	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	"catenin (cadherin-associated protein), delta 2"	protein-coding
chr11.72160498.-	chr11	72160498	72160499	-	0	NA	Intergenic	AluY|SINE|Alu	14774	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr3.47744581.-	chr3	47744581	47744582	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78824	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr3.14343226.+	chr3	14343226	14343227	+	0	NA	Intergenic	Intergenic	-100880	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr16.1231348.+	chr16	1231348	1231349	+	0	NA	"intron (NM_021098, intron 2 of 34)"	"intron (NM_021098, intron 2 of 34)"	28107	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr16.30960471.+	chr16	30960471	30960472	+	0	NA	promoter-TSS (NM_152288)	promoter-TSS (NM_152288)	66	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr5.178157362.-	chr5	178157362	178157363	-	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	-341	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr20.5213459.+	chr20	5213459	5213460	+	0	NA	Intergenic	AluJr4|SINE|Alu	81556	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chrX.56406809.-	chrX	56406809	56406810	-	0	NA	Intergenic	SVA_C|Other|Other	-147939	NM_001159296	11279	Hs.646614	NM_001159296	ENSG00000102349	KLF8	BKLF3|ZNF741	Kruppel-like factor 8	protein-coding
chr9.83940601.-	chr9	83940601	83940602	-	0	NA	Intergenic	AluY|SINE|Alu	-362995	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr17.79640290.-	chr17	79640290	79640291	-	0	NA	"3' UTR (NM_199287, exon 6 of 6)"	"3' UTR (NM_199287, exon 6 of 6)"	-6529	NM_199287	339230	Hs.744125	NM_199287	ENSG00000185298	CCDC137	-	coiled-coil domain containing 137	protein-coding
chr16.1349246.+	chr16	1349246	1349247	+	0	NA	Intergenic	Intergenic	-9908	NM_194260	7329	Hs.302903	NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin-conjugating enzyme E2I	protein-coding
chr14.74180698.+	chr14	74180698	74180699	+	0	NA	"5' UTR (NM_006029, exon 1 of 1)"	"5' UTR (NM_006029, exon 1 of 1)"	430	NM_006029	9240	Hs.194709	NM_006029	ENSG00000176903	PNMA1	MA1	paraneoplastic Ma antigen 1	protein-coding
chr19.38279075.+	chr19	38279075	38279076	+	0	NA	Intergenic	AluY|SINE|Alu	-8845	NM_152360	126231	Hs.531262	NM_001172689	ENSG00000189144	ZNF573	-	zinc finger protein 573	protein-coding
chr7.12736927.+	chr7	12736927	12736928	+	0	NA	Intergenic	AluSg|SINE|Alu	10016	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr5.108146236.+	chr5	108146236	108146237	+	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	62713	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chr8.54998371.-	chr8	54998371	54998372	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16206	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr16.88772896.+	chr16	88772896	88772897	+	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	5	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr5.37295970.-	chr5	37295970	37295971	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46440	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr16.67194346.+	chr16	67194346	67194347	+	0	NA	promoter-TSS (NM_003789)	promoter-TSS (NM_003789)	455	NM_018378	55336	Hs.710714	NM_018378	ENSG00000135722	FBXL8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding
chr10.104255192.-	chr10	104255192	104255193	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7320	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chrM.9331.+	chrM	9331	9332	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.9229815.+	chr16	9229815	9229816	+	0	NA	Intergenic	L2c|LINE|L2	44278	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr2.15794280.+	chr2	15794280	15794281	+	0	NA	Intergenic	Intergenic	62535	NM_004939	1653	Hs.440599	NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD (Asp-Glu-Ala-Asp) box helicase 1	protein-coding
chr16.14464249.-	chr16	14464249	14464250	-	0	NA	Intergenic	Intergenic	-61107	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	miscRNA
chr1.6471024.+	chr1	6471024	6471025	+	0	NA	Intergenic	AluSz|SINE|Alu	8955	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr1.158012595.+	chr1	158012595	158012596	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49532	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr12.8830974.+	chr12	8830974	8830975	+	0	NA	Intergenic	AluSp|SINE|Alu	-15541	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chrX.15026774.+	chrX	15026774	15026775	+	0	NA	Intergenic	AluY|SINE|Alu	123361	NM_001177475	158747	Hs.190043	NM_001177475		MOSPD2	-	motile sperm domain containing 2	protein-coding
chr17.18179021.-	chr17	18179021	18179022	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14597	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr22.51064712.-	chr22	51064712	51064713	-	0	NA	"intron (NM_001085428, intron 4 of 7)"	"intron (NM_001085428, intron 4 of 7)"	-1889	NM_000487	410	Hs.731715	NM_000487		ARSA	MLD	arylsulfatase A	protein-coding
chr2.189813802.+	chr2	189813802	189813803	+	0	NA	Intergenic	LTR1|LTR|ERV1	-25297	NM_000090	1281	Hs.443625	NM_000090	ENSG00000168542	COL3A1	EDS4A	"collagen, type III, alpha 1"	protein-coding
chrX.144903014.+	chrX	144903014	144903015	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	148	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr19.16136966.+	chr19	16136966	16136967	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7557	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chrX.144902917.+	chrX	144902917	144902918	+	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	51	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr19.58310310.+	chr19	58310310	58310311	+	0	NA	Intergenic	AluY|SINE|Alu	15971	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr1.21893063.+	chr1	21893063	21893064	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57205	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chrX.32812429.-	chrX	32812429	32812430	-	0	NA	"intron (NM_000109, intron 7 of 78)"	AluY|SINE|Alu	-225888	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr7.150812728.-	chr7	150812728	150812729	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28902	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr7.21370299.-	chr7	21370299	21370300	-	0	NA	Intergenic	MER52D|LTR|ERV1	97390	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr1.7952828.-	chr1	7952828	7952829	-	0	NA	Intergenic	AluSx1|SINE|Alu	39277	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr16.1868662.+	chr16	1868662	1868663	+	0	NA	"intron (NM_005326, intron 5 of 8)"	"intron (NM_005326, intron 5 of 8)"	8533	NM_005326	3029	Hs.157394	NM_001040427	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
chr2.236999670.+	chr2	236999670	236999671	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	76982	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr1.102295550.-	chr1	102295550	102295551	-	0	NA	"intron (NM_058170, intron 3 of 5)"	AluY|SINE|Alu	42017	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	"DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5"	pseudo
chr10.42644596.-	chr10	42644596	42644597	-	0	NA	Intergenic	Intergenic	-218897	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr2.231536944.-	chr2	231536944	231536945	-	0	NA	Intergenic	AluY|SINE|Alu	-28300	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LOC151475	-	uncharacterized LOC151475	miscRNA
chr8.21944338.+	chr8	21944338	21944339	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2376	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chr7.30535770.+	chr7	30535770	30535771	+	0	NA	TTS (NM_024051)	TTS (NM_024051)	8687	NM_001199815	79017	Hs.530024	NM_001199815	ENSG00000006625	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
chr12.49856948.-	chr12	49856948	49856949	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73991	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr3.146490297.-	chr3	146490297	146490298	-	0	NA	Intergenic	LTR12C|LTR|ERV1	166294	NM_001085420	389158	Hs.254692	NM_001085420	ENSG00000231213	PLSCR5	-	"phospholipid scramblase family, member 5"	protein-coding
chr14.50838448.+	chr14	50838448	50838449	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24169	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr9.35728492.-	chr9	35728492	35728493	-	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	3825	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr10.125611208.-	chr10	125611208	125611209	-	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	-40292	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr9.74827300.-	chr9	74827300	74827301	-	0	NA	"intron (NM_001242505, intron 4 of 15)"	AluY|SINE|Alu	-63033	NM_004293	9615	Hs.494163	NM_001242505	ENSG00000119125	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
chrX.69899492.-	chrX	69899492	69899493	-	0	NA	"intron (NM_001003811, intron 15 of 30)"	SVA_D|Other|Other	-224546	NM_001166278	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr10.3594317.+	chr10	3594317	3594318	+	0	NA	Intergenic	Intergenic	233156	NM_001160125	1316	Hs.709396	NM_001160124	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
chr20.57575078.+	chr20	57575078	57575079	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7231	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr10.38249293.-	chr10	38249293	38249294	-	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	-16160	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chrX.144902942.+	chrX	144902942	144902943	+	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	76	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr1.100493666.-	chr1	100493666	100493667	-	0	NA	Intergenic	AluSx|SINE|Alu	10123	NM_033055	64645	Hs.124156	NM_033055	ENSG00000156875	HIAT1	-	hippocampus abundant transcript 1	protein-coding
chr16.1821809.+	chr16	1821809	1821810	+	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	-99	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr11.31560737.+	chr11	31560737	31560738	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29440	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr6.159150797.+	chr6	159150797	159150798	+	0	NA	"intron (NM_001242395, intron 9 of 15)"	AluY|SINE|Alu	34988	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	-	microRNA 3918	miscRNA
chr15.76627328.-	chr15	76627328	76627329	-	0	NA	Intergenic	AluSg|SINE|Alu	1819	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr6.168352129.+	chr6	168352129	168352130	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25490	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr1.169305222.+	chr1	169305222	169305223	+	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	31964	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr10.135075441.-	chr10	135075441	135075442	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14317	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr11.68303154.+	chr11	68303154	68303155	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74968	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr8.14882308.-	chr8	14882308	14882309	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171289	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr20.10375781.-	chr20	10375781	10375782	-	0	NA	Intergenic	SVA_C|Other|Other	-36792	NM_018848	8195	Hs.741430	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
chr1.220909468.+	chr1	220909468	220909469	+	0	NA	Intergenic	AluSc|SINE|Alu	-12208	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr9.80898906.-	chr9	80898906	80898907	-	0	NA	Intergenic	LTR12|LTR|ERV1	13153	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr16.87903529.+	chr16	87903529	87903530	+	0	NA	promoter-TSS (NM_003486)	promoter-TSS (NM_003486)	-429	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr6.64631338.+	chr6	64631338	64631339	+	0	NA	"intron (NM_001142800, intron 35 of 42)"	"intron (NM_001142800, intron 35 of 42)"	274907	NM_015153	23469	Hs.348921	NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
chr1.247470008.-	chr1	247470008	247470009	-	0	NA	"intron (NM_032752, intron 8 of 8)"	AluSx1|SINE|Alu	-25037	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr17.38356731.+	chr17	38356731	38356732	+	0	NA	Intergenic	AluY|SINE|Alu	-18843	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr4.45824684.-	chr4	45824684	45824685	-	0	NA	Intergenic	AluY|SINE|Alu	-301398	NM_173536	2565	Hs.375051	NM_173536	ENSG00000163285	GABRG1	-	"gamma-aminobutyric acid (GABA) A receptor, gamma 1"	protein-coding
chr10.81319156.+	chr10	81319156	81319157	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	1007	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr13.20343691.+	chr13	20343691	20343692	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13468	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr5.21484603.+	chr5	21484603	21484604	+	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	25014	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr16.2510637.-	chr16	2510637	2510638	-	0	NA	"exon (NM_025108, exon 3 of 10)"	"exon (NM_025108, exon 3 of 10)"	-522	NM_025108	80178	Hs.534491	NM_025108	ENSG00000162062	C16orf59	-	chromosome 16 open reading frame 59	protein-coding
chr6.85382336.-	chr6	85382336	85382337	-	0	NA	Intergenic	AluYb8|SINE|Alu	-91618	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr7.117513420.-	chr7	117513420	117513421	-	0	NA	"exon (NM_033427, exon 1 of 23)"	"exon (NM_033427, exon 1 of 23)"	-141	NM_033427	83992	Hs.592285	NM_033427	ENSG00000077063	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
chr12.48868574.+	chr12	48868574	48868575	+	0	NA	Intergenic	L1PA4|LINE|L1	2126	NM_012404	23519	Hs.532658	NM_012404	ENSG00000139223	ANP32D	PP32R2	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member D"	protein-coding
chr2.113642158.+	chr2	113642158	113642159	+	0	NA	Intergenic	AluJb|SINE|Alu	-28390	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr12.133439912.+	chr12	133439912	133439913	+	0	NA	"intron (NM_018223, intron 5 of 17)"	AluSq|SINE|Alu	24292	NM_018223	55743	Hs.720197	NM_001161344	ENSG00000072609	CHFR	RNF116|RNF196	"checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase"	protein-coding
chr10.73567339.-	chr10	73567339	73567340	-	0	NA	"exon (NM_001171933, exon 12 of 23)"	"exon (NM_001171933, exon 12 of 23)"	4301	NM_001171935	64072	Hs.656032	NM_001171930	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
chr6.57322575.-	chr6	57322575	57322576	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140153	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr9.6559740.+	chr9	6559740	6559741	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85952	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chrX.132399694.+	chrX	132399694	132399695	+	0	NA	Intergenic	Intergenic	-47318	NM_016521	51270	Hs.142908	NM_016521	ENSG00000183434	TFDP3	CT30|DP4|HCA661	"transcription factor Dp family, member 3"	protein-coding
chr16.81282946.+	chr16	81282946	81282947	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10650	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr7.2943499.+	chr7	2943499	2943500	+	0	NA	Intergenic	Intergenic	-59540	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr1.158012598.+	chr1	158012598	158012599	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49535	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr2.74315051.-	chr2	74315051	74315052	-	0	NA	"exon (NM_144993, exon 4 of 9)"	"exon (NM_144993, exon 4 of 9)"	-41601	NM_144993	200424	Hs.516107	NM_144993		TET3	-	tet methylcytosine dioxygenase 3	protein-coding
chr2.173941014.+	chr2	173941014	173941015	+	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	449	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr9.80898941.-	chr9	80898941	80898942	-	0	NA	Intergenic	LTR12|LTR|ERV1	13118	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr17.4435075.+	chr17	4435075	4435076	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23606	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr1.182234395.-	chr1	182234395	182234396	-	0	NA	Intergenic	AluJb|SINE|Alu	-126144	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr12.32064875.-	chr12	32064875	32064876	-	0	NA	Intergenic	AluY|SINE|Alu	47478	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr1.114299526.-	chr1	114299526	114299527	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2251	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr18.2377803.-	chr18	2377803	2377804	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193686	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr11.2213903.+	chr11	2213903	2213904	+	0	NA	Intergenic	Intergenic	19610	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr4.7194143.+	chr4	7194143	7194144	+	0	NA	promoter-TSS (NM_020777)	promoter-TSS (NM_020777)	-231	NM_020777	57537	Hs.479099	NM_020777	ENSG00000184985	SORCS2	-	sortilin-related VPS10 domain containing receptor 2	protein-coding
chr17.18575709.-	chr17	18575709	18575710	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-785	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr15.41613499.-	chr15	41613499	41613500	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11320	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr7.6843803.+	chr7	6843803	6843804	+	0	NA	"intron (NM_198097, intron 12 of 14)"	AluSz|SINE|Alu	22123	NM_198097	221960	Hs.567779	NM_198097		CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
chr12.8777865.-	chr12	8777865	8777866	-	0	NA	Intergenic	Intergenic	12423	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr14.80915390.-	chr14	80915390	80915391	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	217993	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr4.77348118.-	chr4	77348118	77348119	-	0	NA	Intergenic	AluY|SINE|Alu	8135	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr1.160175392.-	chr1	160175392	160175393	-	0	NA	"intron (NM_003768, intron 1 of 3)"	CpG	-267	NM_003768	8682	Hs.517216	NM_003768	ENSG00000162734	PEA15	HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED	phosphoprotein enriched in astrocytes 15	protein-coding
chr7.25058024.+	chr7	25058024	25058025	+	0	NA	Intergenic	SVA_F|Other|Other	-38264	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr2.71561992.+	chr2	71561992	71561993	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3107	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr7.157261603.+	chr7	157261603	157261604	+	0	NA	Intergenic	Intergenic	105511	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr13.50177132.+	chr13	50177132	50177133	+	0	NA	Intergenic	AluY|SINE|Alu	-17413	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr3.133028700.-	chr3	133028700	133028701	-	0	NA	"intron (NM_023943, intron 3 of 5)"	AluYa5|SINE|Alu	90090	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|LIFL-L|PHAKOSIN	"beaded filament structural protein 2, phakinin"	protein-coding
chr12.133020943.+	chr12	133020943	133020944	+	0	NA	Intergenic	Intergenic	-46214	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr4.155663990.+	chr4	155663990	155663991	+	0	NA	Intergenic	CpG	-1173	NM_004744	9227	Hs.658427	NM_004744	ENSG00000121207	LRAT	LCA14	lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)	protein-coding
chr7.45750431.+	chr7	45750431	45750432	+	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	58186	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr12.118282877.-	chr12	118282877	118282878	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123151	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr3.1144600.+	chr3	1144600	1144601	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9971	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr10.4888138.-	chr10	4888138	4888139	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	"intron (NM_001040177, intron 8 of 9)"	-19769	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr9.116111880.-	chr9	116111880	116111881	-	0	NA	promoter-TSS (NM_017688)	promoter-TSS (NM_017688)	-68	NM_017688	54836	Hs.614517	NM_017688	ENSG00000119411	BSPRY	-	B-box and SPRY domain containing	protein-coding
chr22.20137604.+	chr22	20137604	20137605	+	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	-173	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr17.991374.+	chr17	991374	991375	+	0	NA	"intron (NM_001159746, intron 4 of 22)"	"intron (NM_001159746, intron 4 of 22)"	-8988	NR_046393	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr7.139162637.+	chr7	139162637	139162638	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5820	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr2.122878816.-	chr2	122878816	122878817	-	0	NA	Intergenic	AluY|SINE|Alu	-365695	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr6.159416813.-	chr6	159416813	159416814	-	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	-4385	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr19.34623412.+	chr19	34623412	34623413	+	0	NA	Intergenic	SVA_D|Other|Other	-39940	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr3.128194229.+	chr3	128194229	128194230	+	0	NA	Intergenic	Intergenic	-8138	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr9.134449893.-	chr9	134449893	134449894	-	0	NA	Intergenic	AluSx1|SINE|Alu	43231	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr4.10081195.+	chr4	10081195	10081196	+	0	NA	promoter-TSS (NR_036090)	promoter-TSS (NR_036090)	-879	NR_036090	100423011		NR_036090		MIR3138	-	microRNA 3138	miscRNA
chr1.226350685.-	chr1	226350685	226350686	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23738	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr20.44519942.+	chr20	44519942	44519943	+	0	NA	promoter-TSS (NR_074073)	promoter-TSS (NR_074073)	-16	NR_074073	140825	Hs.517094	NM_080749	ENSG00000124257	NEURL2	C20orf163|OZZ|Ozz-E3	neuralized homolog 2 (Drosophila)	miscRNA
chrM.15241.-	chrM	15241	15242	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.43255858.-	chr17	43255858	43255859	-	0	NA	Intergenic	AluY|SINE|Alu	-17594	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chrX.32812432.-	chrX	32812432	32812433	-	0	NA	"intron (NM_000109, intron 7 of 78)"	AluY|SINE|Alu	-225885	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr1.21671971.+	chr1	21671971	21671972	+	0	NA	promoter-TSS (NM_001113348)	promoter-TSS (NM_001113348)	63	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr2.4156374.+	chr2	4156374	4156375	+	0	NA	Intergenic	CpG	-134752	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr11.63286745.+	chr11	63286745	63286746	+	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	11286	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr20.35737801.-	chr20	35737801	35737802	-	0	NA	"intron (NM_152503, intron 21 of 23)"	AluSq10|SINE|Alu	13391	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding
chr2.216410138.-	chr2	216410138	216410139	-	0	NA	Intergenic	AluY|SINE|Alu	109347	NM_212482	2335	Hs.203717	NM_002026	ENSG00000115414	FN1	CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF	fibronectin 1	protein-coding
chr1.212898478.-	chr1	212898478	212898479	-	0	NA	Intergenic	SVA_B|Other|Other	25151	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr10.134773750.+	chr10	134773750	134773751	+	0	NA	Intergenic	Intergenic	-5288	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LOC399829	-	uncharacterized LOC399829	miscRNA
chr9.10787002.+	chr9	10787002	10787003	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174279	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr6.8388518.-	chr6	8388518	8388519	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47276	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr1.28965055.-	chr1	28965055	28965056	-	0	NA	"intron (NM_005644, intron 1 of 5)"	AluSx|SINE|Alu	-4549	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chr1.51444008.-	chr1	51444008	51444009	-	0	NA	Intergenic	CpG	-8366	NM_078626	1031	Hs.525324	NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	"cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)"	protein-coding
chr8.3501058.+	chr8	3501058	3501059	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351270	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr9.108210404.+	chr9	108210404	108210405	+	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	79	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr8.144196766.-	chr8	144196766	144196767	-	0	NA	Intergenic	AluSp|SINE|Alu	-44691	NM_002347	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chrX.53125822.-	chrX	53125822	53125823	-	0	NA	Intergenic	AluJb|SINE|Alu	-14280	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr20.52741103.-	chr20	52741103	52741104	-	0	NA	Intergenic	AluSx1|SINE|Alu	-49413	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr7.1587787.+	chr7	1587787	1587788	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8279	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr14.65590762.-	chr14	65590762	65590763	-	0	NA	Intergenic	AluY|SINE|Alu	21349	NR_073137	4149	Hs.285354	NM_001271068	ENSG00000125952	MAX	bHLHd4	MYC associated factor X	protein-coding
chr1.3022443.-	chr1	3022443	3022444	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	22096	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr5.40801256.-	chr5	40801256	40801257	-	0	NA	Intergenic	SVA_E|Other|Other	2959	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr18.77493496.+	chr18	77493496	77493497	+	0	NA	"intron (NM_001202504, intron 11 of 12)"	CpG	52066	NM_001202504	9150	Hs.734021	NM_001202504	ENSG00000060069	CTDP1	CCFDN|FCP1	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1"	protein-coding
chr20.61425549.+	chr20	61425549	61425550	+	0	NA	Intergenic	MIRc|SINE|MIR	-2256	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr5.172640604.+	chr5	172640604	172640605	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21711	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr11.69451972.-	chr11	69451972	69451973	-	0	NA	Intergenic	CpG	3901	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr7.104040178.-	chr7	104040178	104040179	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71074	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr20.34266389.-	chr20	34266389	34266390	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13511	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr3.121553760.-	chr3	121553760	121553761	-	0	NA	promoter-TSS (NM_018456)	promoter-TSS (NM_018456)	-166	NM_001023570	9657	Hs.604110	NM_001023570	ENSG00000173226	IQCB1	NPHP5|PIQ|SLSN5	IQ motif containing B1	protein-coding
chr1.110881136.-	chr1	110881136	110881137	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-657	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr8.56098977.-	chr8	56098977	56098978	-	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	-83960	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr7.5574557.-	chr7	5574557	5574558	-	0	NA	Intergenic	AluJb|SINE|Alu	4325	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr7.64199184.+	chr7	64199184	64199185	+	0	NA	Intergenic	SVA_D|Other|Other	-55582	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr2.191771943.-	chr2	191771943	191771944	-	0	NA	"intron (NM_001256310, intron 6 of 14)"	AluY|SINE|Alu	-26396	NM_014905	2744	Hs.737608	NM_001256310	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
chr3.36421960.-	chr3	36421960	36421961	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	137	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr10.45240312.-	chr10	45240312	45240313	-	0	NA	Intergenic	AluSx1|SINE|Alu	166452	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr12.53535529.+	chr12	53535529	53535530	+	0	NA	Intergenic	AluY|SINE|Alu	22748	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr14.35800647.+	chr14	35800647	35800648	+	0	NA	Intergenic	AluSx|SINE|Alu	39073	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr14.23517048.-	chr14	23517048	23517049	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5672	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr2.61701809.+	chr2	61701809	61701810	+	0	NA	Intergenic	AluSg|SINE|Alu	-3960	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr7.5610918.-	chr7	5610918	5610919	-	0	NA	Intergenic	AluSx1|SINE|Alu	21518	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr5.17207856.+	chr5	17207856	17207857	+	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	-9076	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr7.128141918.+	chr7	128141918	128141919	+	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	25135	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr13.19728128.-	chr13	19728128	19728129	-	0	NA	Intergenic	Intergenic	-11006	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr5.103302301.-	chr5	103302301	103302302	-	0	NA	Intergenic	LTR12C|LTR|ERV1	403811	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr22.18532561.+	chr22	18532561	18532562	+	0	NA	Intergenic	AluSx1|SINE|Alu	20410	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr19.23457711.+	chr19	23457711	23457712	+	0	NA	Intergenic	AluY|SINE|Alu	-24539	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr16.25268801.+	chr16	25268801	25268802	+	0	NA	promoter-TSS (NM_001012981)	promoter-TSS (NM_001012981)	54	NM_001012981	342357	Hs.513451	NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
chrX.141491559.-	chrX	141491559	141491560	-	0	NA	Intergenic	AluY|SINE|Alu	198483	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr4.22186923.-	chr4	22186923	22186924	-	0	NA	Intergenic	AluY|SINE|Alu	-154366	NR_037877	100505912	Hs.270471	NR_037877		LOC100505912	-	uncharacterized LOC100505912	miscRNA
chr7.80622750.+	chr7	80622750	80622751	+	0	NA	Intergenic	AluY|SINE|Alu	-74083	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C"	protein-coding
chr1.937262.-	chr1	937262	937263	-	0	NA	Intergenic	CpG-24	1710	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr2.1562999.+	chr2	1562999	1563000	+	0	NA	Intergenic	Intergenic	144819	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr1.217394767.+	chr1	217394767	217394768	+	0	NA	Intergenic	AluSq2|SINE|Alu	-83670	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr9.131639097.-	chr9	131639097	131639098	-	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	-5257	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr16.29422018.+	chr16	29422018	29422019	+	0	NA	Intergenic	AluY|SINE|Alu	-38648	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr3.174240459.+	chr3	174240459	174240460	+	0	NA	Intergenic	AluY|SINE|Alu	-336652	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr2.239848618.-	chr2	239848618	239848619	-	0	NA	promoter-TSS (NR_034162)	promoter-TSS (NR_034162)	653	NR_034162	401039	Hs.516791	NM_001001698	ENSG00000227744	FLJ43879	-	FLJ43879 protein	miscRNA
chr1.10462738.+	chr1	10462738	10462739	+	0	NA	"intron (NM_002631, intron 3 of 12)"	AluY|SINE|Alu	3653	NM_002631	5226	Hs.464071	NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
chr2.121103273.+	chr2	121103273	121103274	+	0	NA	promoter-TSS (NM_002193)	promoter-TSS (NM_002193)	-446	NM_002193	3625	Hs.1735	NM_002193	ENSG00000163083	INHBB	-	"inhibin, beta B"	protein-coding
chr15.72816601.-	chr15	72816601	72816602	-	0	NA	"intron (NM_005744, intron 2 of 13)"	AluSz|SINE|Alu	-49934	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	"ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)"	protein-coding
chr17.18179040.+	chr17	18179040	18179041	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14616	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr18.12494760.-	chr18	12494760	12494761	-	0	NA	"intron (NM_001128627, intron 7 of 15)"	AluY|SINE|Alu	-86865	NM_006553	10650	Hs.514718	NM_001142406	ENSG00000141391	SLMO1	C18orf43|HFL-EDDG1|PRELID3A	slowmo homolog 1 (Drosophila)	protein-coding
chr15.50998370.-	chr15	50998370	50998371	-	0	NA	Intergenic	AluYa8|SINE|Alu	19358	NM_017672	54822	Hs.512894	NM_017672		TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK	"transient receptor potential cation channel, subfamily M, member 7"	protein-coding
chrX.85231548.-	chrX	85231548	85231549	-	0	NA	"intron (NM_001145414, intron 4 of 4)"	AluY|SINE|Alu	-71018	NM_000390	1121	Hs.496449	NM_000390	ENSG00000188419	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	choroideremia (Rab escort protein 1)	protein-coding
chr3.46709761.+	chr3	46709761	46709762	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9138	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr19.422280.-	chr19	422280	422281	-	0	NA	"exon (NM_012435, exon 11 of 13)"	"exon (NM_012435, exon 11 of 13)"	13110	NM_001136263	126567	Hs.223770	NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium-dependent domain containing 4C	protein-coding
chr3.149374887.+	chr3	149374887	149374888	+	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	925	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr1.115078571.-	chr1	115078571	115078572	-	0	NA	Intergenic	Intergenic	24790	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chr5.17207823.+	chr5	17207823	17207824	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9109	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr20.62220570.-	chr20	62220570	62220571	-	0	NA	"3' UTR (NM_012384, exon 10 of 10)"	"3' UTR (NM_012384, exon 10 of 10)"	14978	NM_001037335	85441	Hs.517180	NM_001037335	ENSG00000130589	HELZ2	PDIP-1|PRIC285	"helicase with zinc finger 2, transcriptional coactivator"	protein-coding
chr6.89944493.-	chr6	89944493	89944494	-	0	NA	Intergenic	LTR12C|LTR|ERV1	3486	NM_001267582	2569	Hs.99927	NM_001256703	ENSG00000146276	GABRR1	-	"gamma-aminobutyric acid (GABA) A receptor, rho 1"	protein-coding
chr12.115122493.-	chr12	115122493	115122494	-	0	NA	promoter-TSS (NM_005996)	promoter-TSS (NM_005996)	524	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
chr4.48016931.+	chr4	48016931	48016932	+	0	NA	Intergenic	AluY|SINE|Alu	-1860	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr6.111924223.+	chr6	111924223	111924224	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3254	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr8.94702757.-	chr8	94702757	94702758	-	0	NA	"intron (NR_033858, intron 1 of 10)"	AluSq2|SINE|Alu	-9904	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	miscRNA
chr5.43563181.+	chr5	43563181	43563182	+	0	NA	Intergenic	AluSg|SINE|Alu	-5660	NM_183323	10605	Hs.482038	NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding
chr4.65343983.+	chr4	65343983	65343984	+	0	NA	Intergenic	AluY|SINE|Alu	-68805	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr1.115936706.+	chr1	115936706	115936707	+	0	NA	Intergenic	AluYc|SINE|Alu	-55849	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
chr10.120937569.+	chr10	120937569	120937570	+	0	NA	"intron (NM_014098, intron 1 of 6)"	AluJb|SINE|Alu	776	NM_014098	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr10.21843642.+	chr10	21843642	21843643	+	0	NA	"intron (NM_001195627, intron 4 of 4)"	AluSc|SINE|Alu	20068	NM_001195626	8028	Hs.30385	NM_001195626	ENSG00000078403	MLLT10	AF10	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10"	protein-coding
chr13.20387491.+	chr13	20387491	20387492	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30332	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr8.124195053.-	chr8	124195053	124195054	-	0	NA	"5' UTR (NM_032899, exon 1 of 4)"	"5' UTR (NM_032899, exon 1 of 4)"	-301	NM_032899	84985	Hs.379821	NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	"family with sequence similarity 83, member A"	protein-coding
chr2.159693843.+	chr2	159693843	159693844	+	0	NA	Intergenic	AluSp|SINE|Alu	42014	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr3.49314811.-	chr3	49314811	49314812	-	0	NA	promoter-TSS (NM_198562)	promoter-TSS (NM_198562)	303	NM_198562	375341	Hs.403828	NM_198562		C3orf62	-	chromosome 3 open reading frame 62	protein-coding
chr1.182234370.-	chr1	182234370	182234371	-	0	NA	Intergenic	AluJb|SINE|Alu	-126169	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr15.43285700.-	chr15	43285700	43285701	-	0	NA	"intron (NM_174916, intron 33 of 46)"	AluSz|SINE|Alu	72693	NM_173500	146057	Hs.727864	NM_173500		TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
chr1.197418594.-	chr1	197418594	197418595	-	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	-181260	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr5.5953948.-	chr5	5953948	5953949	-	0	NA	Intergenic	Intergenic	-383457	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr8.136469571.-	chr8	136469571	136469572	-	0	NA	promoter-TSS (NM_006558)	promoter-TSS (NM_006558)	145	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	"KH domain containing, RNA binding, signal transduction associated 3"	protein-coding
chr8.91618527.-	chr8	91618527	91618528	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-39606	NM_001146273	169200	Hs.737401	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
chrX.18849797.+	chrX	18849797	18849798	+	0	NA	Intergenic	AluY|SINE|Alu	-58617	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr7.5396294.-	chr7	5396294	5396295	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	-66883	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr2.85691641.+	chr2	85691641	85691642	+	0	NA	Intergenic	AluSg7|SINE|Alu	29723	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr17.57868944.+	chr17	57868944	57868945	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49683	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr17.29151569.-	chr17	29151569	29151570	-	0	NA	"exon (NM_015986, exon 1 of 8)"	"exon (NM_015986, exon 1 of 8)"	-209	NM_015986	51379	Hs.649372	NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor-like factor 3	protein-coding
chr1.226350776.-	chr1	226350776	226350777	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23647	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr16.88000464.+	chr16	88000464	88000465	+	0	NA	"intron (NM_001173542, intron 1 of 12)"	MLT1J|LTR|ERVL-MaLR	-3160	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr12.107215598.-	chr12	107215598	107215599	-	0	NA	"intron (NM_018157, intron 3 of 8)"	AluY|SINE|Alu	46989	NR_040246	100287944	Hs.742087	NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	miscRNA
chr7.26216469.-	chr7	26216469	26216470	-	0	NA	"intron (NM_004289, intron 1 of 3)"	SVA_A|Other|Other	-23944	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
chr21.47744427.+	chr21	47744427	47744428	+	0	NA	promoter-TSS (NM_058180)	promoter-TSS (NM_058180)	391	NM_006031	5116	Hs.474069	NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
chr2.25758483.+	chr2	25758483	25758484	+	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	114608	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr16.3203792.+	chr16	3203792	3203793	+	0	NA	Intergenic	AluSg|SINE|Alu	18658	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr7.36845293.+	chr7	36845293	36845294	+	0	NA	Intergenic	AluJb|SINE|Alu	-81139	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr19.14041767.+	chr19	14041767	14041768	+	0	NA	TTS (NM_024825)	TTS (NM_024825)	7522	NM_024825	79883	Hs.448497	NM_001146254	ENSG00000132000	PODNL1	SLRR5B	podocan-like 1	protein-coding
chrX.122884646.+	chrX	122884646	122884647	+	0	NA	Intergenic	AluSz|SINE|Alu	-17742	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr6.89377971.-	chr6	89377971	89377972	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295377	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chrM.6892.-	chrM	6892	6893	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr4.185174156.-	chr4	185174156	185174157	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35042	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chrX.47215631.-	chrX	47215631	47215632	-	0	NA	Intergenic	AluY|SINE|Alu	14368	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr1.182234390.-	chr1	182234390	182234391	-	0	NA	Intergenic	AluJb|SINE|Alu	-126149	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chr9.83509.-	chr9	83509	83510	-	0	NA	Intergenic	SVA_E|Other|Other	-34908	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr16.50142556.+	chr16	50142556	50142557	+	0	NA	Intergenic	AluSz6|SINE|Alu	42675	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr12.752227.-	chr12	752227	752228	-	0	NA	"intron (NM_016533, intron 1 of 3)"	CpG	-20528	NM_016533	4815	Hs.656450	NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
chr2.38825105.+	chr2	38825105	38825106	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5073	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr7.1798906.+	chr7	1798906	1798907	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50108	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr1.10727902.+	chr1	10727902	10727903	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128831	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr9.28773102.+	chr9	28773102	28773103	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53799	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chrX.13062312.-	chrX	13062312	13062313	-	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	-605	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr17.47363952.+	chr17	47363952	47363953	+	0	NA	Intergenic	AluSx|SINE|Alu	38347	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr5.72416097.-	chr5	72416097	72416098	-	0	NA	promoter-TSS (NM_173490)	promoter-TSS (NM_173490)	291	NM_173490	134285	Hs.162246	NM_001161342	ENSG00000157111	TMEM171	PRP2	transmembrane protein 171	protein-coding
chr2.74691971.-	chr2	74691971	74691972	-	0	NA	"intron (NM_006302, intron 1 of 3)"	CpG	-566	NM_001146158	7841	Hs.516119	NM_001146158	ENSG00000115275	MOGS	CDG2B|CWH41|DER7|GCS1	mannosyl-oligosaccharide glucosidase	protein-coding
chr17.2311338.-	chr17	2311338	2311339	-	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	7080	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr7.5570060.-	chr7	5570060	5570061	-	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	-172	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr13.50177029.+	chr13	50177029	50177030	+	0	NA	Intergenic	AluY|SINE|Alu	-17310	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chrX.132930064.-	chrX	132930064	132930065	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189609	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr15.101457918.+	chr15	101457918	101457919	+	0	NA	Intergenic	Intergenic	-1542	NM_024652	79705	Hs.407918	NM_024652	ENSG00000154237	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
chr18.77627511.+	chr18	77627511	77627512	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3843	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr5.170687199.-	chr5	170687199	170687200	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49089	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr2.34374954.+	chr2	34374954	34374955	+	0	NA	Intergenic	AluY|SINE|Alu	-421670	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr11.77200922.+	chr11	77200922	77200923	+	0	NA	Intergenic	SVA_D|Other|Other	-15814	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr4.163164060.+	chr4	163164060	163164061	+	0	NA	Intergenic	AluY|SINE|Alu	-78874	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr21.46974492.-	chr21	46974492	46974493	-	0	NA	Intergenic	L1MB3|LINE|L1	12107	NM_194255	6573	Hs.736903	NM_001205206	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	"solute carrier family 19 (folate transporter), member 1"	protein-coding
chr8.26486426.-	chr8	26486426	26486427	-	0	NA	"intron (NM_001244604, intron 7 of 13)"	"intron (NM_001244604, intron 7 of 13)"	-50505	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr18.77627532.-	chr18	77627532	77627533	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3864	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr16.49636645.-	chr16	49636645	49636646	-	0	NA	"intron (NM_001271620, intron 5 of 7)"	"intron (NM_001271620, intron 5 of 7)"	-220004	NM_015069	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr19.1809855.+	chr19	1809855	1809856	+	0	NA	"intron (NR_047593, intron 3 of 28)"	"intron (NR_047593, intron 3 of 28)"	2381	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr17.56332351.-	chr17	56332351	56332352	-	0	NA	"intron (NM_006151, intron 9 of 12)"	"intron (NM_006151, intron 9 of 12)"	-16564	NM_001160102	4025	Hs.234742	NM_001160102	ENSG00000167419	LPO	SPO	lactoperoxidase	protein-coding
chr8.61460285.-	chr8	61460285	61460286	-	0	NA	"intron (NM_001242644, intron 1 of 6)"	SVA_D|Other|Other	-30816	NM_001242644	5862	Hs.369017	NM_001242644	ENSG00000104388	RAB2A	LHX|RAB2	"RAB2A, member RAS oncogene family"	protein-coding
chr1.14076303.-	chr1	14076303	14076304	-	0	NA	"intron (NM_001135610, intron 6 of 7)"	CpG	-427	NM_001007257	7799	Hs.371823	NM_001007257	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	"PR domain containing 2, with ZNF domain"	protein-coding
chr2.16350228.+	chr2	16350228	16350229	+	0	NA	Intergenic	Intergenic	-268383	NR_026766	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|NCYM|NYCM	MYCN opposite strand/antisense RNA	miscRNA
chr7.1542256.+	chr7	1542256	1542257	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1762	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr3.81337961.+	chr3	81337961	81337962	+	0	NA	Intergenic	AluY|SINE|Alu	472989	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr2.128430609.+	chr2	128430609	128430610	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2155	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr19.10587516.-	chr19	10587516	10587517	-	0	NA	Intergenic	AluSq2|SINE|Alu	-23883	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr2.190445764.-	chr2	190445764	190445765	-	0	NA	promoter-TSS (NM_014585)	promoter-TSS (NM_014585)	227	NM_014585	30061	Hs.643005	NM_014585	ENSG00000138449	SLC40A1	FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3	"solute carrier family 40 (iron-regulated transporter), member 1"	protein-coding
chr10.324338.-	chr10	324338	324339	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98404	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr13.72439322.+	chr13	72439322	72439323	+	0	NA	"intron (NM_080759, intron 1 of 10)"	(CA)n|Simple_repeat|Simple_repeat	2008	NM_080759	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr7.1542235.+	chr7	1542235	1542236	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1783	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr11.72160493.-	chr11	72160493	72160494	-	0	NA	Intergenic	AluY|SINE|Alu	14769	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr6.165122650.+	chr6	165122650	165122651	+	0	NA	Intergenic	Intergenic	600461	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr9.138065696.+	chr9	138065696	138065697	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7759	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr7.5629215.-	chr7	5629215	5629216	-	0	NA	Intergenic	AluJo|SINE|Alu	3221	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr2.207270696.+	chr2	207270696	207270697	+	0	NA	Intergenic	AluY|SINE|Alu	-37672	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr18.41408421.+	chr18	41408421	41408422	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550806	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr12.105375593.-	chr12	105375593	105375594	-	0	NA	Intergenic	AluSx3|SINE|Alu	4505	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr14.103988598.-	chr14	103988598	103988599	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-598	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr16.12354976.+	chr16	12354976	12354977	+	0	NA	"intron (NM_032167, intron 14 of 20)"	"intron (NM_032167, intron 14 of 20)"	284374	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr4.100009973.-	chr4	100009973	100009974	-	0	NA	promoter-TSS (NM_000671)	promoter-TSS (NM_000671)	35	NR_037884	100507053	Hs.635084	NR_037884	ENSG00000246090	LOC100507053	-	uncharacterized LOC100507053	miscRNA
chr2.26781436.-	chr2	26781436	26781437	-	0	NA	"exon (NM_194248, exon 1 of 47)"	"exon (NM_194248, exon 1 of 47)"	-130	NM_194248	9381	Hs.91608	NM_004802	ENSG00000115155	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
chr1.12962503.-	chr1	12962503	12962504	-	0	NA	Intergenic	SVA_D|Other|Other	4409	NM_001039361	343071	Hs.715459	NM_001039361	ENSG00000187545	PRAMEF10	RP5-845O24.7	PRAME family member 10	protein-coding
chr13.68791131.-	chr13	68791131	68791132	-	0	NA	Intergenic	AluY|SINE|Alu	-668326	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr6.33500233.-	chr6	33500233	33500234	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47837	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr12.118079864.+	chr12	118079864	118079865	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280257	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr2.198058509.-	chr2	198058509	198058510	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117012	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr8.60674704.-	chr8	60674704	60674705	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519250	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr7.128142012.+	chr7	128142012	128142013	+	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	25229	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr9.16748459.-	chr9	16748459	16748460	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122327	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr16.5016319.-	chr16	5016319	5016320	-	0	NA	"intron (NM_014692, intron 2 of 15)"	AluSx1|SINE|Alu	-8001	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14-like 5 (S. cerevisiae)	protein-coding
chr11.12841285.+	chr11	12841285	12841286	+	0	NA	"intron (NM_021961, intron 3 of 12)"	AluY|SINE|Alu	145316	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chr3.8635227.+	chr3	8635227	8635228	+	0	NA	Intergenic	Intergenic	21759	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr15.41687851.+	chr15	41687851	41687852	+	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	6807	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr2.88284191.-	chr2	88284191	88284192	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	AluY|SINE|Alu	-1118	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
chr10.94759569.+	chr10	94759569	94759570	+	0	NA	"intron (NM_001013848, intron 19 of 21)"	AluSx1|SINE|Alu	-61452	NM_183374	340665	Hs.369993	NM_183374	ENSG00000187553	CYP26C1	FFDD4	"cytochrome P450, family 26, subfamily C, polypeptide 1"	protein-coding
chr5.68477051.-	chr5	68477051	68477052	-	0	NA	Intergenic	AluY|SINE|Alu	8324	NM_022909	64946	Hs.631967	NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
chr7.21370268.-	chr7	21370268	21370269	-	0	NA	Intergenic	MER52D|LTR|ERV1	97421	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr22.34378884.-	chr22	34378884	34378885	-	0	NA	Intergenic	AluSx1|SINE|Alu	62468	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr4.17513786.+	chr4	17513786	17513787	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	71	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr10.118500986.+	chr10	118500986	118500987	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1099	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr12.131191636.+	chr12	131191636	131191637	+	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	132183	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr17.65363623.+	chr17	65363623	65363624	+	0	NA	promoter-TSS (NM_002816)	promoter-TSS (NM_002816)	-902	NM_002816	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr22.22557695.+	chr22	22557695	22557696	+	0	NA	Intergenic	Intergenic	-41505	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr16.81849438.-	chr16	81849438	81849439	-	0	NA	"intron (NM_002661, intron 2 of 32)"	AluSz|SINE|Alu	-36539	NM_002661	5336	Hs.413111	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3	"phospholipase C, gamma 2 (phosphatidylinositol-specific)"	protein-coding
chr22.30781369.+	chr22	30781369	30781370	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1933	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr10.43563295.-	chr10	43563295	43563296	-	0	NA	Intergenic	Intergenic	9222	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr19.7123172.-	chr19	7123172	7123173	-	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	-53701	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr2.157198668.+	chr2	157198668	157198669	+	0	NA	Intergenic	CpG	-9381	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr22.38498775.+	chr22	38498775	38498776	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7901	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr5.21484701.+	chr5	21484701	21484702	+	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	25112	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr11.119749473.+	chr11	119749473	119749474	+	0	NA	Intergenic	AluSp|SINE|Alu	-150038	NM_203285	5818	Hs.334846	NM_002855	ENSG00000110400	PVRL1	CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
chr1.142618973.-	chr1	142618973	142618974	-	0	NA	Intergenic	CpG	-94632	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	"ankyrin repeat domain 20 family, member A12, pseudogene"	pseudo
chrX.153073554.-	chrX	153073554	153073555	-	0	NA	"intron (NM_032512, intron 2 of 7)"	"intron (NM_032512, intron 2 of 7)"	-13535	NM_006280	6748	Hs.409223	NM_001204526	ENSG00000180879	SSR4	TRAPD	"signal sequence receptor, delta"	protein-coding
chr14.22016203.-	chr14	22016203	22016204	-	0	NA	Intergenic	AluY|SINE|Alu	10866	NM_005407	6297	Hs.743336	NM_005407	ENSG00000165821	SALL2	HSAL2|Sal-2|ZNF795|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding
chr1.229694855.-	chr1	229694855	229694856	-	0	NA	promoter-TSS (NM_012089)	promoter-TSS (NM_012089)	413	NM_012089	23456	Hs.17614	NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	"ATP-binding cassette, sub-family B (MDR/TAP), member 10"	protein-coding
chr8.143858627.+	chr8	143858627	143858628	+	0	NA	promoter-TSS (NM_177476)	promoter-TSS (NM_177476)	117	NM_177477	66004	Hs.604828	NM_023946	ENSG00000180155	LYNX1	SLURP2	Ly6/neurotoxin 1	protein-coding
chr3.185305616.-	chr3	185305616	185305617	-	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	-1585	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr11.67351064.-	chr11	67351064	67351065	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	2	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr16.544876.+	chr16	544876	544877	+	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	20026	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr11.34488064.+	chr11	34488064	34488065	+	0	NA	"intron (NM_001752, intron 10 of 12)"	AluY|SINE|Alu	27592	NM_001752	847	Hs.502302	NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
chr10.76198279.+	chr10	76198279	76198280	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262032	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr7.95234906.+	chr7	95234906	95234907	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8981	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr3.48117707.-	chr3	48117707	48117708	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-13062	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr19.11043323.-	chr19	11043323	11043324	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3899	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr1.7764311.-	chr1	7764311	7764312	-	0	NA	"intron (NM_015215, intron 11 of 22)"	GC_rich|Low_complexity|Low_complexity	67018	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr4.1358079.+	chr4	1358079	1358080	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	16975	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr2.213546627.-	chr2	213546627	213546628	-	0	NA	Intergenic	AluSc8|SINE|Alu	143275	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr4.37957826.+	chr4	37957826	37957827	+	0	NA	"intron (NM_001253912, intron 2 of 20)"	AluSz|SINE|Alu	-4230	NM_006607	10744	Hs.668806	NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
chr10.134216436.-	chr10	134216436	134216437	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5734	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr1.10748864.-	chr1	10748864	10748865	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-107869	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr6.170039317.-	chr6	170039317	170039318	-	0	NA	"intron (NM_001202550, intron 14 of 21)"	(CTGTG)n|Simple_repeat|Simple_repeat	-62842	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr9.86597320.+	chr9	86597320	86597321	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1683	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr21.47403585.-	chr21	47403585	47403586	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1922	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr17.18575695.+	chr17	18575695	18575696	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	799	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr10.135031489.+	chr10	135031489	135031490	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12289	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr2.240030760.-	chr2	240030760	240030761	-	0	NA	"intron (NM_006037, intron 14 of 26)"	"intron (NM_006037, intron 14 of 26)"	23138	NR_039643	100616493		NR_039643		MIR4441	-	microRNA 4441	miscRNA
chr1.234041157.-	chr1	234041157	234041158	-	0	NA	"intron (NM_173508, intron 1 of 7)"	CpG	-478	NM_173508	148641	Hs.158748	NM_173508	ENSG00000183780	SLC35F3	-	"solute carrier family 35, member F3"	protein-coding
chr1.212898487.-	chr1	212898487	212898488	-	0	NA	Intergenic	SVA_B|Other|Other	25160	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr11.46730250.+	chr11	46730250	46730251	+	0	NA	Intergenic	AluSz|SINE|Alu	7606	NM_001184751	79797	Hs.656931	NM_001184751	ENSG00000175213	ZNF408	-	zinc finger protein 408	protein-coding
chr18.63211142.+	chr18	63211142	63211143	+	0	NA	Intergenic	AluY|SINE|Alu	-206346	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr13.96681148.-	chr13	96681148	96681149	-	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	-24588	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr15.84075913.+	chr15	84075913	84075914	+	0	NA	Intergenic	AluY|SINE|Alu	-40178	NM_003027	6457	Hs.666365	NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-2B-L3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3-domain GRB2-like 3	protein-coding
chr7.5570053.+	chr7	5570053	5570054	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	179	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr10.12344443.-	chr10	12344443	12344444	-	0	NA	Intergenic	AluSc8|SINE|Alu	47140	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr3.129321923.+	chr3	129321923	129321924	+	0	NA	"intron (NM_015103, intron 1 of 35)"	"intron (NM_015103, intron 1 of 35)"	3659	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding
chr9.100747350.+	chr9	100747350	100747351	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1861	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr8.65283401.+	chr8	65283401	65283402	+	0	NA	Intergenic	Intergenic	-2374	NR_034102	100130155	Hs.731717	NR_034102	ENSG00000254377	LOC100130155	-	uncharacterized LOC100130155	miscRNA
chr2.224724781.-	chr2	224724781	224724782	-	0	NA	Intergenic	AluSp|SINE|Alu	22462	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr1.9832316.+	chr1	9832316	9832317	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52234	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr2.170666384.-	chr2	170666384	170666385	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11062	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr11.725956.-	chr11	725956	725957	-	0	NA	"intron (NM_022772, intron 17 of 20)"	CpG-3663	-19836	NM_022772	64787	Hs.55016	NM_022772	ENSG00000177106	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
chr22.24237298.+	chr22	24237298	24237299	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	733	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr1.90038715.+	chr1	90038715	90038716	+	0	NA	"intron (NM_001134476, intron 5 of 7)"	AluY|SINE|Alu	14443	NM_015350	23507	Hs.741594	NM_001134476	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	"leucine rich repeat containing 8 family, member B"	protein-coding
chr12.94946997.-	chr12	94946997	94946998	-	0	NA	Intergenic	AluSx|SINE|Alu	8568	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr19.49186334.+	chr19	49186334	49186335	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10070	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr11.5623429.-	chr11	5623429	5623430	-	0	NA	"intron (NM_001198645, intron 1 of 5)"	AluY|SINE|Alu	-5564	NM_001003818	117854	Hs.729048	NM_001003818	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
chr2.120964358.+	chr2	120964358	120964359	+	0	NA	Intergenic	Intergenic	16626	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr19.644294.+	chr19	644294	644295	+	0	NA	TTS (NM_020637)	TTS (NM_020637)	4368	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr17.7561693.+	chr17	7561693	7561694	+	0	NA	TTS (NM_001678)	TTS (NM_001678)	7439	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr2.198058515.-	chr2	198058515	198058516	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117006	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr1.8021814.-	chr1	8021814	8021815	-	0	NA	promoter-TSS (NM_007262)	promoter-TSS (NM_007262)	-100	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr2.183903180.-	chr2	183903180	183903181	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-49	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr19.21789906.+	chr19	21789906	21789907	+	0	NA	Intergenic	SVA_D|Other|Other	101469	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr15.37172814.-	chr15	37172814	37172815	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5920	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr11.66887549.-	chr11	66887549	66887550	-	0	NA	"intron (NM_012308, intron 1 of 20)"	"intron (NM_012308, intron 1 of 20)"	-809	NR_027473	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr10.6094823.-	chr10	6094823	6094824	-	0	NA	"intron (NM_000417, intron 1 of 7)"	"intron (NM_000417, intron 1 of 7)"	-9510	NM_000417	3559	Hs.231367	NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|TCGFR	"interleukin 2 receptor, alpha"	protein-coding
chr9.139780626.-	chr9	139780626	139780627	-	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	339	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr12.132353150.+	chr12	132353150	132353151	+	0	NA	Intergenic	Intergenic	-26129	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr10.71044916.+	chr10	71044916	71044917	+	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	15160	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr1.97799177.+	chr1	97799177	97799178	+	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	237698	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr6.165953239.+	chr6	165953239	165953240	+	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	122349	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr4.2420658.-	chr4	2420658	2420659	-	0	NA	promoter-TSS (NM_001172656)	promoter-TSS (NM_001172656)	43	NM_001193282	402160	Hs.443116	NM_001193282		LOC402160	-	uncharacterized LOC402160	protein-coding
chr16.67519964.-	chr16	67519964	67519965	-	0	NA	Intergenic	AluY|SINE|Alu	2248	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr2.64811846.-	chr2	64811846	64811847	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22600	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr20.62457898.+	chr20	62457898	62457899	+	0	NA	Intergenic	AluY|SINE|Alu	-21042	NM_025224	140685	Hs.585028	NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
chr5.178491409.-	chr5	178491409	178491410	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluJo|SINE|Alu	-3802	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr14.35080553.+	chr14	35080553	35080554	+	0	NA	"intron (NM_021249, intron 1 of 12)"	AluSz6|SINE|Alu	18762	NM_021249	58533	Hs.356647	NM_152233	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
chrX.53123319.-	chrX	53123319	53123320	-	0	NA	Intergenic	CpG	-11777	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.133831458.-	chr5	133831458	133831459	-	0	NA	Intergenic	Intergenic	30340	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr1.2980157.-	chr1	2980157	2980158	-	0	NA	TTS (NR_024371)	TTS (NR_024371)	-4132	NR_024371	440556	Hs.531041	NM_001004337	ENSG00000177133	FLJ42875	-	uncharacterized LOC440556	miscRNA
chr4.15936847.+	chr4	15936847	15936848	+	0	NA	TTS (NM_005130)	TTS (NM_005130)	3516	NM_005130	9982	Hs.1690	NM_005130	ENSG00000137440	FGFBP1	FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17	fibroblast growth factor binding protein 1	protein-coding
chrX.70362687.+	chrX	70362687	70362688	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-1994	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr1.178011467.+	chr1	178011467	178011468	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4325	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr9.719244.-	chr9	719244	719245	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12438	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr8.22594705.-	chr8	22594705	22594706	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43890	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr8.11739689.-	chr8	11739689	11739690	-	0	NA	Intergenic	AluSx1|SINE|Alu	14043	NM_147782	1508	Hs.520898	NM_001908	ENSG00000164733	CTSB	APPS|CPSB	cathepsin B	protein-coding
chr14.21493792.-	chr14	21493792	21493793	-	0	NA	promoter-TSS (NM_201540)	promoter-TSS (NM_201540)	-143	NM_201535	57447	Hs.525205	NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
chr14.77495390.-	chr14	77495390	77495391	-	0	NA	promoter-TSS (NM_024496)	promoter-TSS (NM_024496)	348	NM_024496	64207	Hs.744332	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
chr22.50243125.-	chr22	50243125	50243126	-	0	NA	Intergenic	CpG	4372	NM_014838	9889	Hs.475208	NM_014838		ZBED4	-	"zinc finger, BED-type containing 4"	protein-coding
chr7.129803725.-	chr7	129803725	129803726	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41613	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr17.76183185.-	chr17	76183185	76183186	-	0	NA	promoter-TSS (NM_001010982)	promoter-TSS (NM_001010982)	-100	NM_003258	7083	Hs.515122	NM_003258	ENSG00000167900	TK1	TK2	"thymidine kinase 1, soluble"	protein-coding
chr11.9346809.+	chr11	9346809	9346810	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10494	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chr5.25535456.+	chr5	25535456	25535457	+	0	NA	Intergenic	AluY|SINE|Alu	-694764	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr6.164052122.-	chr6	164052122	164052123	-	0	NA	Intergenic	CpG	-216447	NM_006775	9444	Hs.510324	NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	"QKI, KH domain containing, RNA binding"	protein-coding
chr7.4815329.-	chr7	4815329	4815330	-	0	NA	promoter-TSS (NM_014855)	promoter-TSS (NM_014855)	-67	NM_014855	9907	Hs.558440	NM_014855		AP5Z1	KIAA0415|SPG48|zeta	"adaptor-related protein complex 5, zeta 1 subunit"	protein-coding
chr16.1158301.-	chr16	1158301	1158302	-	0	NA	Intergenic	Intergenic	12057	NM_207419	390664	Hs.527853	NM_207419		C1QTNF8	CTRP8|UNQ5829	C1q and tumor necrosis factor related protein 8	protein-coding
chr4.7968604.+	chr4	7968604	7968605	+	0	NA	"3' UTR (NM_001130084, exon 20 of 20)"	"3' UTR (NM_001130084, exon 20 of 20)"	-26951	NM_001134647	60312	Hs.529369	NM_001134647	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
chr4.1400182.-	chr4	1400182	1400183	-	0	NA	Intergenic	CpG	-14842	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr9.140683745.-	chr9	140683745	140683746	-	0	NA	"intron (NM_024757, intron 15 of 26)"	CpG	-26271	NR_024341	643210	Hs.721002	NM_001039765		FLJ40292	-	uncharacterized LOC643210	miscRNA
chr19.6779885.-	chr19	6779885	6779886	-	0	NA	"intron (NM_001258206, intron 1 of 25)"	AluY|SINE|Alu	-7206	NM_005428	7409	Hs.116237	NM_001258206	ENSG00000141968	VAV1	VAV	vav 1 guanine nucleotide exchange factor	protein-coding
chr22.46466214.-	chr22	46466214	46466215	-	0	NA	Intergenic	CpG	15663	NR_027033	400931	Hs.235838	NR_027033	ENSG00000197182	MIRLET7BHG	RP4-695O20__B.10	MIRLET7B host gene (non-protein coding)	miscRNA
chr4.49149498.-	chr4	49149498	49149499	-	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-161233	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr19.48814188.+	chr19	48814188	48814189	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSc8|SINE|Alu	9144	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr19.35418165.+	chr19	35418165	35418166	+	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	358	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr8.86574422.+	chr8	86574422	86574423	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	320	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr13.110832775.+	chr13	110832775	110832776	+	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	126721	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chr10.134351688.-	chr10	134351688	134351689	-	0	NA	"intron (NM_005539, intron 1 of 15)"	"intron (NM_005539, intron 1 of 15)"	-335	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chrX.21676551.-	chrX	21676551	21676552	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	103	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chrM.6569.+	chrM	6569	6570	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.3220535.+	chr19	3220535	3220536	+	0	NA	Intergenic	AluSz|SINE|Alu	-4166	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr3.121553745.-	chr3	121553745	121553746	-	0	NA	promoter-TSS (NM_018456)	promoter-TSS (NM_018456)	-181	NM_001023570	9657	Hs.604110	NM_001023570	ENSG00000173226	IQCB1	NPHP5|PIQ|SLSN5	IQ motif containing B1	protein-coding
chr11.62551827.+	chr11	62551827	62551828	+	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	-3047	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr22.22981689.+	chr22	22981689	22981690	+	0	NA	"non-coding (NR_024591, exon 2 of 10)"	"non-coding (NR_024591, exon 2 of 10)"	5323	NR_024591	25812	Hs.367764	NR_024591		POM121L1P	POM121L1	"POM121 transmembrane nucleoporin-like 1, pseudogene"	pseudo
chr14.21741112.+	chr14	21741112	21741113	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3474	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr17.18575628.+	chr17	18575628	18575629	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	866	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr14.103988568.+	chr14	103988568	103988569	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	628	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr8.123899512.-	chr8	123899512	123899513	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105611	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr6.2085028.+	chr6	2085028	2085029	+	0	NA	"intron (NM_001253846, intron 4 of 10)"	AluY|SINE|Alu	91197	NM_001253846	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr16.23607520.-	chr16	23607520	23607521	-	0	NA	"exon (NM_005003, exon 1 of 5)"	"exon (NM_005003, exon 1 of 5)"	-119	NM_005003	4706	Hs.189716	NM_005003	ENSG00000004779	NDUFAB1	ACP|FASN2A|SDAP	"NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa"	protein-coding
chrX.99617550.-	chrX	99617550	99617551	-	0	NA	"intron (NM_020766, intron 2 of 4)"	AluY|SINE|Alu	-47721	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr17.45349575.+	chr17	45349575	45349576	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18367	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr16.89707680.+	chr16	89707680	89707681	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-16472	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr4.185174115.-	chr4	185174115	185174116	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35001	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr8.144504260.-	chr8	144504260	144504261	-	0	NA	Intergenic	Intergenic	-8342	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr14.103405467.-	chr14	103405467	103405468	-	0	NA	"intron (NM_006035, intron 34 of 36)"	AluY|SINE|Alu	-16474	NM_030943	81693	Hs.534494	NM_030943	ENSG00000166126	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
chr1.9517579.+	chr1	9517579	9517580	+	0	NA	Intergenic	AluJb|SINE|Alu	-81949	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr15.41613132.+	chr15	41613132	41613133	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11687	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr3.33220080.+	chr3	33220080	33220081	+	0	NA	"intron (NM_015551, intron 3 of 4)"	AluY|SINE|Alu	40627	NM_015551	26032	Hs.196647	NM_015551	ENSG00000173705	SUSD5	-	sushi domain containing 5	protein-coding
chr17.4453837.-	chr17	4453837	4453838	-	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	-4844	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr16.632141.-	chr16	632141	632142	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7216	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr18.74291305.-	chr18	74291305	74291306	-	0	NA	Intergenic	Intergenic	-50693	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LOC284276	-	uncharacterized LOC284276	miscRNA
chr1.113576652.+	chr1	113576652	113576653	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39179	NM_014813	9860	Hs.729143	NM_014813	ENSG00000198799	LRIG2	LIG-2|LIG2|UFS2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding
chr19.2492326.-	chr19	2492326	2492327	-	0	NA	Intergenic	AluSz|SINE|Alu	-16203	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr2.113965319.+	chr2	113965319	113965320	+	0	NA	Intergenic	AluY|SINE|Alu	-27785	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr1.161508258.-	chr1	161508258	161508259	-	0	NA	Intergenic	AluYf4|SINE|Alu	-11560	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr7.158240680.-	chr7	158240680	158240681	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-84825	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr14.19890138.+	chr14	19890138	19890139	+	0	NA	Intergenic	CpG	-4231	NR_073460	101101776	Hs.617315	NR_073460		LOC101101776	-	ribosome biogenesis protein BMS1 homolog pseudogene	pseudo
chr4.1626690.-	chr4	1626690	1626691	-	0	NA	Intergenic	CpG	-59028	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr6.160985712.-	chr6	160985712	160985713	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53556	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr10.104209700.-	chr10	104209700	104209701	-	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	-126	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr10.4887328.+	chr10	4887328	4887329	+	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	18959	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr7.77452590.-	chr7	77452590	77452591	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16857	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr3.136117008.-	chr3	136117008	136117009	-	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	-147841	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr16.1845098.+	chr16	1845098	1845099	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-189	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chrY.59004186.-	chrY	59004186	59004187	-	0	NA	Intergenic	AluSq2|SINE|Alu	96271	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
chr5.178491415.+	chr5	178491415	178491416	+	0	NA	"intron (NM_014594, intron 2 of 4)"	"intron (NM_014594, intron 2 of 4)"	3808	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr16.12210424.-	chr16	12210424	12210425	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139822	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chrX.88129124.+	chrX	88129124	88129125	+	0	NA	Intergenic	AluY|SINE|Alu	126898	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr10.120427007.-	chr10	120427007	120427008	-	0	NA	Intergenic	AluSp|SINE|Alu	71847	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr7.1116544.-	chr7	1116544	1116545	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	9899	NM_001505	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr10.45240277.-	chr10	45240277	45240278	-	0	NA	Intergenic	AluSx1|SINE|Alu	166487	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr19.36843570.+	chr19	36843570	36843571	+	0	NA	"intron (NM_020917, intron 4 of 4)"	AluY|SINE|Alu	-20950	NR_038278	100506930	Hs.595153	NR_038278	ENSG00000232677	LINC00665	-	long intergenic non-protein coding RNA 665	miscRNA
chr2.86115863.-	chr2	86115863	86115864	-	0	NA	"intron (NM_003896, intron 1 of 6)"	CpG	-294	NM_003896	8869	Hs.415117	NM_001042437	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|ST3GalV	"ST3 beta-galactoside alpha-2,3-sialyltransferase 5"	protein-coding
chr4.77348120.+	chr4	77348120	77348121	+	0	NA	Intergenic	AluY|SINE|Alu	-8133	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr2.61306998.+	chr2	61306998	61306999	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13635	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr2.240383651.+	chr2	240383651	240383652	+	0	NA	Intergenic	Intergenic	-61008	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr13.50177126.+	chr13	50177126	50177127	+	0	NA	Intergenic	AluY|SINE|Alu	-17407	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr11.111190865.+	chr11	111190865	111190866	+	0	NA	Intergenic	AluYa5|SINE|Alu	-20326	NR_034154	399948	Hs.729225	NM_207429	ENSG00000196167	C11orf92	-	chromosome 11 open reading frame 92	miscRNA
chrX.102023734.+	chrX	102023734	102023735	+	0	NA	promoter-TSS (NR_038988)	promoter-TSS (NR_038988)	-361	NR_038988	100287765	Hs.687084	NR_038988	ENSG00000223546	LINC00630	-	long intergenic non-protein coding RNA 630	miscRNA
chr12.123921366.-	chr12	123921366	123921367	-	0	NA	promoter-TSS (NM_145058)	promoter-TSS (NM_145058)	102	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr1.153574081.-	chr1	153574081	153574082	-	0	NA	Intergenic	AluY|SINE|Alu	-11433	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr16.57323350.+	chr16	57323350	57323351	+	0	NA	Intergenic	AluY|SINE|Alu	-4766	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
chr8.104645092.-	chr8	104645092	104645093	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132116	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr12.132389092.+	chr12	132389092	132389093	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9813	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr6.55775404.+	chr6	55775404	55775405	+	0	NA	Intergenic	SVA_D|Other|Other	-35029	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr16.70148586.+	chr16	70148586	70148587	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1057	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr11.20409100.-	chr11	20409100	20409101	-	0	NA	promoter-TSS (NM_005788)	promoter-TSS (NM_005788)	-24	NM_005788	10196	Hs.152337	NM_001145166	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
chr3.84297064.-	chr3	84297064	84297065	-	0	NA	Intergenic	AluY|SINE|Alu	-621662	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr22.24237221.-	chr22	24237221	24237222	-	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	-656	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr16.88668043.+	chr16	88668043	88668044	+	0	NA	"intron (NM_144604, intron 6 of 17)"	"intron (NM_144604, intron 6 of 17)"	31254	NM_144604	124245	Hs.93670	NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
chr20.33283445.+	chr20	33283445	33283446	+	0	NA	Intergenic	AluY|SINE|Alu	-8703	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr19.46966413.+	chr19	46966413	46966414	+	0	NA	Intergenic	AluSz|SINE|Alu	8407	NM_018215	55228	Hs.8395	NM_001103149	ENSG00000182013	PNMAL1	-	paraneoplastic Ma antigen family-like 1	protein-coding
chr5.22207054.+	chr5	22207054	22207055	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64593	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr5.87926441.-	chr5	87926441	87926442	-	0	NA	"intron (NR_015436, intron 3 of 4)"	AluSx1|SINE|Alu	-36316	NR_030741	407047		NR_030741	ENSG00000207570	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2	microRNA 9-2	miscRNA
chr19.38335701.+	chr19	38335701	38335702	+	0	NA	"intron (NR_040015, intron 2 of 5)"	AluSg|SINE|Alu	10135	NR_040015	100631378	Hs.726940	NR_040015	ENSG00000225868	LOC100631378	-	uncharacterized 100631378	miscRNA
chr5.57859589.-	chr5	57859589	57859590	-	0	NA	Intergenic	SVA_A|Other|Other	19350	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr1.6132051.-	chr1	6132051	6132052	-	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	-25877	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr19.2525149.-	chr19	2525149	2525150	-	0	NA	"intron (NM_052847, intron 3 of 4)"	CpG	-49026	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr2.96013144.+	chr2	96013144	96013145	+	0	NA	"intron (NM_001034914, intron 1 of 7)"	CpG-15247	376	NM_001034914	30818	Hs.437376	NM_001034914	ENSG00000115041	KCNIP3	CSEN|DREAM|KCHIP3	"Kv channel interacting protein 3, calsenilin"	protein-coding
chr7.124427235.+	chr7	124427235	124427236	+	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	3629	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr8.101661653.+	chr8	101661653	101661654	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	240	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr11.70975629.-	chr11	70975629	70975630	-	0	NA	Intergenic	MLT2B3|LTR|ERVL	39821	NM_012309	22941	Hs.268726	NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
chr19.48814070.-	chr19	48814070	48814071	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9262	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr16.924589.-	chr16	924589	924590	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69146	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr7.36403830.-	chr7	36403830	36403831	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2952	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr22.50987301.-	chr22	50987301	50987302	-	0	NA	"exon (NM_138433, exon 1 of 1)"	"exon (NM_138433, exon 1 of 1)"	-839	NM_138433	113730	Hs.137007	NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
chr19.39032693.-	chr19	39032693	39032694	-	0	NA	"intron (NM_001042723, intron 83 of 104)"	AluJr|SINE|Alu	-75950	NM_007181	11184	Hs.95424	NM_001042600	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
chr16.634236.+	chr16	634236	634237	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-5121	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr19.1252674.-	chr19	1252674	1252675	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4122	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chrX.86720997.+	chrX	86720997	86720998	+	0	NA	Intergenic	SVA_C|Other|Other	-51718	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr5.38846416.-	chr5	38846416	38846417	-	0	NA	"5' UTR (NM_003999, exon 1 of 18)"	"5' UTR (NM_003999, exon 1 of 18)"	-315	NM_003999	9180	Hs.658389	NM_001168355	ENSG00000145623	OSMR	OSMRB|PLCA1	oncostatin M receptor	protein-coding
chr17.2731897.-	chr17	2731897	2731898	-	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	-32165	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr16.29245062.+	chr16	29245062	29245063	+	0	NA	Intergenic	Intergenic	-68546	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr3.195498034.+	chr3	195498034	195498035	+	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	40810	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr9.139497802.+	chr9	139497802	139497803	+	0	NA	Intergenic	MIRb|SINE|MIR	-55506	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr11.44542098.+	chr11	44542098	44542099	+	0	NA	Intergenic	Intergenic	-45043	NM_002231	3732	Hs.527778	NM_001024844		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
chr9.135013579.-	chr9	135013579	135013580	-	0	NA	Intergenic	AluSz|SINE|Alu	23755	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr4.141490057.-	chr4	141490057	141490058	-	0	NA	promoter-TSS (NM_021833)	promoter-TSS (NM_021833)	98	NM_021833	7350	Hs.249211	NM_021833		UCP1	SLC25A7|UCP	"uncoupling protein 1 (mitochondrial, proton carrier)"	protein-coding
chr10.101769657.-	chr10	101769657	101769658	-	0	NA	promoter-TSS (NM_015221)	promoter-TSS (NM_015221)	-19	NM_015221	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding
chr6.12041593.-	chr6	12041593	12041594	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28869	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr7.74447133.+	chr7	74447133	74447134	+	0	NA	Intergenic	AluSx1|SINE|Alu	42566	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr4.1358115.+	chr4	1358115	1358116	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	17011	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chrX.53111674.+	chrX	53111674	53111675	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	132	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.2841817.-	chr19	2841817	2841818	-	0	NA	"intron (NM_001172775, intron 1 of 3)"	CpG	-384	NM_001172775	148254	Hs.47712	NM_001172775	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
chr2.114361294.-	chr2	114361294	114361295	-	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	0	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr7.99835964.-	chr7	99835964	99835965	-	0	NA	"intron (NM_178831, intron 1 of 4)"	AluJb|SINE|Alu	-19093	NM_024070	79037	Hs.729356	NM_024070	ENSG00000213413	PVRIG	C7orf15	poliovirus receptor related immunoglobulin domain containing	protein-coding
chr19.4141905.-	chr19	4141905	4141906	-	0	NA	Intergenic	AluY|SINE|Alu	11693	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr21.15436780.+	chr21	15436780	15436781	+	0	NA	Intergenic	CpG	-84015	NR_027270	391267	Hs.364456	NM_153750	ENSG00000215559	ANKRD20A11P	C21orf81	"ankyrin repeat domain 20 family, member A11, pseudogene"	pseudo
chr15.41613154.-	chr15	41613154	41613155	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11665	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr2.240980382.-	chr2	240980382	240980383	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2017	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr19.36398457.+	chr19	36398457	36398458	+	0	NA	"exon (NM_003332, exon 3 of 5)"	"exon (NM_003332, exon 3 of 5)"	754	NM_001173514	7305	Hs.515369	NM_001173514	ENSG00000011600	TYROBP	DAP12|KARAP|PLOSL	TYRO protein tyrosine kinase binding protein	protein-coding
chrX.20694453.-	chrX	20694453	20694454	-	0	NA	Intergenic	AluY|SINE|Alu	409703	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr1.54775812.+	chr1	54775812	54775813	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96167	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr1.145400455.-	chr1	145400455	145400456	-	0	NA	Intergenic	AluSq2|SINE|Alu	12736	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr10.6985579.-	chr10	6985579	6985580	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164019	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr3.112807955.-	chr3	112807955	112807956	-	0	NA	Intergenic	AluYc|SINE|Alu	69400	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr5.32209055.+	chr5	32209055	32209056	+	0	NA	Intergenic	SVA_F|Other|Other	-34630	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
chr13.112769125.+	chr13	112769125	112769126	+	0	NA	Intergenic	L2a|LINE|L2	47212	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr6.27633496.-	chr6	27633496	27633497	-	0	NA	Intergenic	AluSx1|SINE|Alu	28318	NR_038293	100507173	Hs.733567	NR_038292		LOC100507173	-	uncharacterized LOC100507173	miscRNA
chr22.29231153.+	chr22	29231153	29231154	+	0	NA	Intergenic	AluSz6|SINE|Alu	-34593	NM_005080	7494	Hs.437638	NM_001079539	ENSG00000100219	XBP1	TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
chr5.167154320.+	chr5	167154320	167154321	+	0	NA	"intron (NM_001122679, intron 2 of 28)"	AluY|SINE|Alu	442477	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr3.102973933.+	chr3	102973933	102973934	+	0	NA	Intergenic	SVA_D|Other|Other	820074	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr19.15719733.-	chr19	15719733	15719734	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6296	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr6.2221766.+	chr6	2221766	2221767	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24102	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr8.17288528.-	chr8	17288528	17288529	-	0	NA	Intergenic	AluY|SINE|Alu	17488	NM_004686	9108	Hs.625674	NM_004686		MTMR7	-	myotubularin related protein 7	protein-coding
chr12.31575303.-	chr12	31575303	31575304	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96144	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr15.101457911.+	chr15	101457911	101457912	+	0	NA	Intergenic	Intergenic	-1549	NM_024652	79705	Hs.407918	NM_024652	ENSG00000154237	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
chr10.81146757.+	chr10	81146757	81146758	+	0	NA	"intron (NM_153367, intron 3 of 3)"	"intron (NM_153367, intron 3 of 3)"	39537	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr3.129048070.-	chr3	129048070	129048071	-	0	NA	Intergenic	AluY|SINE|Alu	12950	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr7.22396726.+	chr7	22396726	22396727	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-193	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr16.49498948.-	chr16	49498948	49498949	-	0	NA	Intergenic	CpG	-91140	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr10.134411405.-	chr10	134411405	134411406	-	0	NA	"intron (NM_005539, intron 1 of 15)"	CpG	-60052	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr13.28543075.+	chr13	28543075	28543076	+	0	NA	"exon (NM_001265, exon 1 of 3)"	"exon (NM_001265, exon 1 of 3)"	430	NM_001265	1045	Hs.740844	NM_001265		CDX2	CDX-3|CDX3	caudal type homeobox 2	protein-coding
chr22.17719092.+	chr22	17719092	17719093	+	0	NA	Intergenic	AluSg|SINE|Alu	-28313	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr10.7626533.-	chr10	7626533	7626534	-	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	-35103	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chrX.132399708.+	chrX	132399708	132399709	+	0	NA	Intergenic	Intergenic	-47332	NM_016521	51270	Hs.142908	NM_016521	ENSG00000183434	TFDP3	CT30|DP4|HCA661	"transcription factor Dp family, member 3"	protein-coding
chr15.99979838.-	chr15	99979838	99979839	-	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	126295	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chrM.123.+	chrM	123	124	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr11.74107027.-	chr11	74107027	74107028	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2475	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr7.15235637.+	chr7	15235637	15235638	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-354562	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	"diacylglycerol kinase, beta 90kDa"	protein-coding
chr1.2157808.+	chr1	2157808	2157809	+	0	NA	Intergenic	AluJb|SINE|Alu	-2326	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr12.38493589.-	chr12	38493589	38493590	-	0	NA	Intergenic	Intergenic	216968	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr16.78269478.-	chr16	78269478	78269479	-	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	-136151	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr10.64976218.+	chr10	64976218	64976219	+	0	NA	"intron (NM_004241, intron 2 of 22)"	AluY|SINE|Alu	52764	NM_004241	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	RP11-10C13.2|TRIP8	jumonji domain containing 1C	protein-coding
chr11.638968.-	chr11	638968	638969	-	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	-1663	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr14.23706401.+	chr14	23706401	23706402	+	0	NA	Intergenic	AluSz|SINE|Alu	48908	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr11.17788551.+	chr11	17788551	17788552	+	0	NA	"intron (NM_004976, intron 1 of 1)"	AluSx|SINE|Alu	31056	NM_004976	3746	Hs.552896	NM_001112741	ENSG00000129159	KCNC1	KV3.1|KV4|NGK2	"potassium voltage-gated channel, Shaw-related subfamily, member 1"	protein-coding
chr2.25390980.+	chr2	25390980	25390981	+	0	NA	"intron (NM_001035256, intron 1 of 3)"	AluSp|SINE|Alu	579	NM_000939	5443	Hs.1897	NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
chr1.227498642.-	chr1	227498642	227498643	-	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	-7184	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chr11.125035308.+	chr11	125035308	125035309	+	0	NA	"intron (NM_022062, intron 1 of 12)"	CpG	749	NM_022062	63876	Hs.278564	NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
chr3.121553744.-	chr3	121553744	121553745	-	0	NA	promoter-TSS (NM_018456)	promoter-TSS (NM_018456)	-182	NM_001023570	9657	Hs.604110	NM_001023570	ENSG00000173226	IQCB1	NPHP5|PIQ|SLSN5	IQ motif containing B1	protein-coding
chr20.61443860.+	chr20	61443860	61443861	+	0	NA	"exon (NM_007346, exon 7 of 7)"	"exon (NM_007346, exon 7 of 7)"	-4554	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chr4.148516433.-	chr4	148516433	148516434	-	0	NA	Intergenic	AluY|SINE|Alu	22106	NM_018241	55751	Hs.203896	NM_018241		TMEM184C	TMEM34	transmembrane protein 184C	protein-coding
chr6.170548023.+	chr6	170548023	170548024	+	0	NA	Intergenic	Intergenic	23634	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chrX.153979112.+	chrX	153979112	153979113	+	0	NA	"intron (NM_001081573, intron 1 of 9)"	CpG	236	NM_001081573	139716	Hs.496982	NM_001081573	ENSG00000160219	GAB3	-	GRB2-associated binding protein 3	protein-coding
chr1.169305360.+	chr1	169305360	169305361	+	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	31826	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr16.29422140.-	chr16	29422140	29422141	-	0	NA	Intergenic	AluSx|SINE|Alu	38526	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr12.49163951.-	chr12	49163951	49163952	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1869	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr16.30810979.+	chr16	30810979	30810980	+	0	NA	Intergenic	AluSx|SINE|Alu	-12456	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr7.130728566.-	chr7	130728566	130728567	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSp|SINE|Alu	-63223	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr9.28773121.+	chr9	28773121	28773122	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53818	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr19.48356242.+	chr19	48356242	48356243	+	0	NA	Intergenic	Intergenic	31143	NM_000554	1406	Hs.639114	NM_000554	ENSG00000105392	CRX	CORD2|CRD|LCA7|OTX3	cone-rod homeobox	protein-coding
chr9.72101678.-	chr9	72101678	72101679	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157437	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr7.45850672.-	chr7	45850672	45850673	-	0	NA	Intergenic	Intergenic	42055	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr9.121872018.-	chr9	121872018	121872019	-	0	NA	Intergenic	AluYk4|SINE|Alu	-259721	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr12.34501191.-	chr12	34501191	34501192	-	0	NA	Intergenic	GSATII|Satellite|centr	-325975	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr17.8252820.+	chr17	8252820	8252821	+	0	NA	Intergenic	AluY|SINE|Alu	9632	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr1.1983001.-	chr1	1983001	1983002	-	0	NA	"intron (NM_002744, intron 1 of 17)"	CpG	-1092	NM_002744	5590	Hs.496255	NM_001033581	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	"protein kinase C, zeta"	protein-coding
chr11.128041179.-	chr11	128041179	128041180	-	0	NA	Intergenic	AluY|SINE|Alu	-351026	NM_005238	2113	Hs.369438	NM_001143820	ENSG00000134954	ETS1	ETS-1|EWSR2	v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	protein-coding
chr19.45678481.+	chr19	45678481	45678482	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3020	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr10.134300003.+	chr10	134300003	134300004	+	0	NA	Intergenic	Intergenic	41289	NM_173541	170393	Hs.375059	NM_173541		C10orf91	RP11-432J24.4|bA432J24.4	chromosome 10 open reading frame 91	protein-coding
chr9.26387254.+	chr9	26387254	26387255	+	0	NA	Intergenic	AluY|SINE|Alu	320581	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr2.88284215.-	chr2	88284215	88284216	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	AluY|SINE|Alu	-1094	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
chr18.20879346.+	chr18	20879346	20879347	+	0	NA	"intron (NM_032933, intron 14 of 14)"	L3|LINE|CR1	138579	NM_032933	85019	Hs.137562	NM_032933	ENSG00000134490	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
chr15.29966591.-	chr15	29966591	29966592	-	0	NA	Intergenic	AluSg|SINE|Alu	103664	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	"family with sequence similarity 189, member A1"	protein-coding
chr7.1798936.+	chr7	1798936	1798937	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50138	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chrX.99100735.+	chrX	99100735	99100736	+	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	94106	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr14.21741123.-	chr14	21741123	21741124	-	0	NA	Intergenic	AluSx1|SINE|Alu	3485	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr17.73636608.+	chr17	73636608	73636609	+	0	NA	"intron (NR_028439, intron 1 of 1)"	"intron (NR_028439, intron 1 of 1)"	3933	NR_028439	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr1.246995883.+	chr1	246995883	246995884	+	0	NA	Intergenic	AluSx1|SINE|Alu	42964	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr3.164119749.-	chr3	164119749	164119750	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676534	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr5.1494538.+	chr5	1494538	1494539	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29538	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr20.39978474.+	chr20	39978474	39978475	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8914	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr6.107390102.+	chr6	107390102	107390103	+	0	NA	"exon (NM_001080450, exon 5 of 5)"	"exon (NM_001080450, exon 5 of 5)"	40695	NM_001142468	51250	Hs.486084	NM_001142468	ENSG00000130349	C6orf203	PRED31|RP11-59I9.1	chromosome 6 open reading frame 203	protein-coding
chr1.183259270.-	chr1	183259270	183259271	-	0	NA	"exon (NM_170706, exon 4 of 11)"	"exon (NM_170706, exon 4 of 11)"	-14739	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr2.71559308.+	chr2	71559308	71559309	+	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	423	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr16.78282869.-	chr16	78282869	78282870	-	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	-149542	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr1.43081167.+	chr1	43081167	43081168	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42881	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr10.134684084.-	chr10	134684084	134684085	-	0	NA	"intron (NM_001200049, intron 32 of 57)"	Tigger1|DNA|TcMar-Tigger	-72005	NM_001200049	54777	Hs.719815	NM_001200049	ENSG00000171811	TTC40	C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	tetratricopeptide repeat domain 40	protein-coding
chr22.29279699.+	chr22	29279699	29279700	+	0	NA	promoter-TSS (NM_001206998)	promoter-TSS (NM_001206998)	-56	NM_001206998	84133	Hs.732114	NM_001206998	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
chr21.47838741.+	chr21	47838741	47838742	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40121	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr3.31533166.+	chr3	31533166	31533167	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41325	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chrX.128371097.-	chrX	128371097	128371098	-	0	NA	Intergenic	AluSq4|SINE|Alu	-286363	NM_139035	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1"	protein-coding
chr1.227982864.+	chr1	227982864	227982865	+	0	NA	Intergenic	Intergenic	-20554	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr4.1358087.-	chr4	1358087	1358088	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16983	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr17.40536640.-	chr17	40536640	40536641	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3765	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr14.23341438.+	chr14	23341438	23341439	+	0	NA	"5' UTR (NM_014045, exon 1 of 7)"	"5' UTR (NM_014045, exon 1 of 7)"	478	NM_014045	26020	Hs.525232	NM_014045		LRP10	LRP9|MST087	low density lipoprotein receptor-related protein 10	protein-coding
chr5.1877047.-	chr5	1877047	1877048	-	0	NA	TTS (NM_016358)	TTS (NM_016358)	-5833	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr7.22130145.+	chr7	22130145	22130146	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-144603	NM_001127371	55536	Hs.744069	NM_001127370	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
chr20.62512922.-	chr20	62512922	62512923	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13533	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr6.163752528.-	chr6	163752528	163752529	-	0	NA	Intergenic	Intergenic	7023	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr7.5557983.-	chr7	5557983	5557984	-	0	NA	Intergenic	AluYc|SINE|Alu	4584	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr11.1266516.-	chr11	1266516	1266517	-	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	-22221	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr4.37548403.+	chr4	37548403	37548404	+	0	NA	"intron (NM_001104629, intron 1 of 3)"	HERVE_a-int|LTR|ERV1	-37452	NM_018302	55286	Hs.107527	NM_001104629		C4orf19	-	chromosome 4 open reading frame 19	protein-coding
chr17.38400027.+	chr17	38400027	38400028	+	0	NA	"intron (NM_133264, intron 1 of 7)"	AluSx|SINE|Alu	24453	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr19.45678445.-	chr19	45678445	45678446	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3056	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr19.4141932.+	chr19	4141932	4141933	+	0	NA	Intergenic	AluY|SINE|Alu	-11666	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr19.2634463.+	chr19	2634463	2634464	+	0	NA	"intron (NM_052847, intron 2 of 4)"	"intron (NM_052847, intron 2 of 4)"	68283	NM_052847	2788	Hs.735237	NM_052847	ENSG00000176533	GNG7	-	"guanine nucleotide binding protein (G protein), gamma 7"	protein-coding
chr11.71702908.-	chr11	71702908	71702909	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7050	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr20.19987636.+	chr20	19987636	19987637	+	0	NA	Intergenic	AluY|SINE|Alu	-10298	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr17.46187014.-	chr17	46187014	46187015	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2067	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr5.39649183.-	chr5	39649183	39649184	-	0	NA	Intergenic	AluSx3|SINE|Alu	223848	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr1.38096169.-	chr1	38096169	38096170	-	0	NA	"intron (NM_001242910, intron 2 of 6)"	"intron (NM_001242910, intron 2 of 6)"	-4426	NM_001242910	284654	Hs.135015	NM_001038633	ENSG00000169218	RSPO1	CRISTIN3|RSPO	R-spondin 1	protein-coding
chr19.9311190.+	chr19	9311190	9311191	+	0	NA	Intergenic	AluSc8|SINE|Alu	14357	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr14.23233418.+	chr14	23233418	23233419	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2313	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr6.108315246.+	chr6	108315246	108315247	+	0	NA	Intergenic	AluSz|SINE|Alu	-35764	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr11.45810295.-	chr11	45810295	45810296	-	0	NA	Intergenic	AluSz6|SINE|Alu	15328	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr2.202612461.-	chr2	202612461	202612462	-	0	NA	"intron (NM_020919, intron 8 of 33)"	AluY|SINE|Alu	-33434	NM_001135745	57679	Hs.621812	NM_001135745	ENSG00000003393	ALS2	ALS2CR6|ALSJ|IAHSP|PLSJ	amyotrophic lateral sclerosis 2 (juvenile)	protein-coding
chr2.80188700.-	chr2	80188700	80188701	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	312215	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr3.181806582.-	chr3	181806582	181806583	-	0	NA	Intergenic	AluY|SINE|Alu	-376870	NM_003106	6657	Hs.732963	NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
chr1.247465266.+	chr1	247465266	247465267	+	0	NA	"intron (NM_032752, intron 8 of 8)"	"intron (NM_032752, intron 8 of 8)"	29779	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr7.766165.-	chr7	766165	766166	-	0	NA	promoter-TSS (NM_017802)	promoter-TSS (NM_017802)	173	NM_017802	54919	Hs.535896	NM_017802	ENSG00000164818	HEATR2	CILD18	HEAT repeat containing 2	protein-coding
chr14.101679068.+	chr14	101679068	101679069	+	0	NA	Intergenic	AluSx1|SINE|Alu	142820	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr17.12456665.+	chr17	12456665	12456666	+	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	3380	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr16.440468.-	chr16	440468	440469	-	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	6724	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr16.29245060.+	chr16	29245060	29245061	+	0	NA	Intergenic	Intergenic	-68548	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr17.74894609.+	chr17	74894609	74894610	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25880	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr16.27960127.+	chr16	27960127	27960128	+	0	NA	"intron (NM_001109763, intron 2 of 6)"	AluY|SINE|Alu	-60649	NM_144675	146395	Hs.91910	NM_001109763	ENSG00000169181	GSG1L	PRO19651	GSG1-like	protein-coding
chr3.195928193.+	chr3	195928193	195928194	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSx1|SINE|Alu	10107	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr9.93564198.-	chr9	93564198	93564199	-	0	NA	promoter-TSS (NM_001174168)	promoter-TSS (NM_001174168)	9	NM_001174168	6850	Hs.371720	NM_001135052	ENSG00000165025	SYK	p72-Syk	spleen tyrosine kinase	protein-coding
chr11.1122314.+	chr11	1122314	1122315	+	0	NA	Intergenic	Intergenic	47439	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr4.84864616.+	chr4	84864616	84864617	+	0	NA	Intergenic	SVA_D|Other|Other	407146	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr12.49212627.-	chr12	49212627	49212628	-	0	NA	"5' UTR (NM_001206915, exon 1 of 12)"	"5' UTR (NM_001206915, exon 1 of 12)"	-373	NM_001206915	784	Hs.737291	NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	"calcium channel, voltage-dependent, beta 3 subunit"	protein-coding
chr1.228427874.-	chr1	228427874	228427875	-	0	NA	"intron (NM_001271223, intron 10 of 115)"	AluY|SINE|Alu	26509	NR_073154	574407	Hs.650039	NM_001025495	ENSG00000162913	C1orf145	-	chromosome 1 open reading frame 145	miscRNA
chr15.29132963.-	chr15	29132963	29132964	-	0	NA	Intergenic	Intergenic	39142	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr13.95354865.+	chr13	95354865	95354866	+	0	NA	Intergenic	CpG	9524	NM_007084	11166	Hs.187577	NM_007084	ENSG00000125285	SOX21	SOX25	SRY (sex determining region Y)-box 21	protein-coding
chr20.22538161.+	chr20	22538161	22538162	+	0	NA	Intergenic	Intergenic	21119	NR_001558	140828	Hs.9842	NR_001558	ENSG00000259974	LINC00261	C20orf56|NCRNA00261|bA216C10.1|dJ788L20.2	long intergenic non-protein coding RNA 261	miscRNA
chr3.196754744.+	chr3	196754744	196754745	+	0	NA	"exon (NM_033316, exon 2 of 7)"	"exon (NM_033316, exon 2 of 7)"	1942	NM_033316	4241	Hs.184727	NM_005929	ENSG00000163975	MFI2	CD228|MAP97|MTF1	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding
chr5.178491435.-	chr5	178491435	178491436	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3828	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr22.29446751.+	chr22	29446751	29446752	+	0	NA	"exon (NM_032173, exon 8 of 9)"	"exon (NM_032173, exon 8 of 9)"	11156	NM_015370	25770	Hs.50891	NM_015370	ENSG00000100249	C22orf31	HS747E2A|bK747E2.1	chromosome 22 open reading frame 31	protein-coding
chr17.6946769.-	chr17	6946769	6946770	-	0	NA	"exon (NM_153357, exon 1 of 4)"	"exon (NM_153357, exon 1 of 4)"	-473	NM_153357	162515	Hs.336564	NM_153357	ENSG00000174326	SLC16A11	MCT11	"solute carrier family 16, member 11 (monocarboxylic acid transporter 11)"	protein-coding
chr16.723848.-	chr16	723848	723849	-	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	2227	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr1.80177675.+	chr1	80177675	80177676	+	0	NA	Intergenic	AluSx|SINE|Alu	-705180	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr11.16894107.-	chr11	16894107	16894108	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133959	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr10.74059503.+	chr10	74059503	74059504	+	0	NA	Intergenic	AluSz6|SINE|Alu	25826	NM_019058	54541	Hs.523012	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
chr20.53482666.-	chr20	53482666	53482667	-	0	NA	Intergenic	AluSx|SINE|Alu	-390400	NM_018431	55816	Hs.656582	NM_018431	ENSG00000101134	DOK5	C20orf180	docking protein 5	protein-coding
chr2.108084957.+	chr2	108084957	108084958	+	0	NA	Intergenic	LTR12C|LTR|ERV1	357626	NR_024439	729121	Hs.386155	XR_159390	ENSG00000230651	LOC729121	-	uncharacterized LOC729121	miscRNA
chr6.70606353.+	chr6	70606353	70606354	+	0	NA	"intron (NM_001858, intron 2 of 50)"	AluYb8|SINE|Alu	29905	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr10.17496276.-	chr10	17496276	17496277	-	0	NA	promoter-TSS (NM_001004470)	promoter-TSS (NM_001004470)	22	NM_001004470	338596	Hs.677766	NM_001004470		ST8SIA6	SIA8F|SIAT8F|ST8SIA-VI	"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6"	protein-coding
chr11.1946090.-	chr11	1946090	1946091	-	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	-5291	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr2.87655673.-	chr2	87655673	87655674	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	99301	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr1.54953553.+	chr1	54953553	54953554	+	0	NA	Intergenic	Intergenic	-60254	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr14.20778644.+	chr14	20778644	20778645	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4491	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr7.12595790.+	chr7	12595790	12595791	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14413	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr20.58244247.+	chr20	58244247	58244248	+	0	NA	"intron (NM_080672, intron 1 of 12)"	MIRb|SINE|MIR	-7469	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr1.29563064.+	chr1	29563064	29563065	+	0	NA	promoter-TSS (NM_001195001)	promoter-TSS (NM_001195001)	36	NM_001195001	10076	Hs.19718	NM_001195001	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	"protein tyrosine phosphatase, receptor type, U"	protein-coding
chr22.48136484.+	chr22	48136484	48136485	+	0	NA	Intergenic	Intergenic	-109166	NR_033377	400932	Hs.561058	NM_001001693	ENSG00000205634	FLJ46257	-	uncharacterized LOC400932	miscRNA
chrM.6562.-	chrM	6562	6563	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.1820993.-	chr16	1820993	1820994	-	0	NA	TTS (NM_001040439)	TTS (NM_001040439)	-717	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr15.96903035.+	chr15	96903035	96903036	+	0	NA	Intergenic	Intergenic	26466	NM_001145157	7026	Hs.519445	NM_001145155	ENSG00000185551	NR2F2	ARP1|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	"nuclear receptor subfamily 2, group F, member 2"	protein-coding
chr13.24099539.-	chr13	24099539	24099540	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	44970	NM_148957	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr1.151573444.-	chr1	151573444	151573445	-	0	NA	Intergenic	SVA_E|Other|Other	11218	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr1.6094724.+	chr1	6094724	6094725	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	376	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr16.70148625.-	chr16	70148625	70148626	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1096	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr8.144546591.+	chr8	144546591	144546592	+	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	-33989	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr8.144512800.+	chr8	144512800	144512801	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-198	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr10.102037190.+	chr10	102037190	102037191	+	0	NA	"intron (NM_173809, intron 4 of 4)"	SVA_D|Other|Other	8926	NR_046296	282991	Hs.34906	NM_001001342		BLOC1S2	BLOS2|RP11-316M21.4	"biogenesis of lysosomal organelles complex-1, subunit 2"	protein-coding
chr13.113764478.+	chr13	113764478	113764479	+	0	NA	"intron (NM_000131, intron 2 of 8)"	CpG	4376	NM_019616	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII (serum prothrombin conversion accelerator)	protein-coding
chr7.66480039.-	chr7	66480039	66480040	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18247	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr2.19132844.-	chr2	19132844	19132845	-	0	NA	Intergenic	AluYk4|SINE|Alu	361998	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr2.47661306.-	chr2	47661306	47661307	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31100	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr3.177829376.+	chr3	177829376	177829377	+	0	NA	Intergenic	AluSx|SINE|Alu	-307613	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	KCNMB2-IT1	-	KCNMB2 intronic transcript 1 (non-protein coding)	miscRNA
chr8.142397022.-	chr8	142397022	142397023	-	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	19657	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr12.123758816.+	chr12	123758816	123758817	+	0	NA	Intergenic	AluSx|SINE|Alu	-1953	NR_073007	8099	Hs.433201	NM_001270433	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin-dependent kinase 2 associated protein 1	protein-coding
chr14.73603674.+	chr14	73603674	73603675	+	0	NA	"intron (NM_000021, intron 1 of 11)"	CpG	531	NM_007318	5663	Hs.3260	NM_000021	ENSG00000080815	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
chr10.32238986.+	chr10	32238986	32238987	+	0	NA	Intergenic	AluY|SINE|Alu	-21182	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr6.3127005.-	chr6	3127005	3127006	-	0	NA	"intron (NR_026648, intron 3 of 8)"	AluSx|SINE|Alu	-8079	NM_004332	670	Hs.10136	NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase-like (serine hydrolase)	protein-coding
chr7.95234837.+	chr7	95234837	95234838	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8912	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr14.97183896.+	chr14	97183896	97183897	+	0	NA	Intergenic	AluY|SINE|Alu	-79788	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr2.224724676.-	chr2	224724676	224724677	-	0	NA	Intergenic	AluSp|SINE|Alu	22357	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr10.135017599.+	chr10	135017599	135017600	+	0	NA	"intron (NM_152643, intron 17 of 29)"	"intron (NM_152643, intron 17 of 29)"	-26179	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr18.2679097.+	chr18	2679097	2679098	+	0	NA	"intron (NM_015295, intron 5 of 47)"	AluSg|SINE|Alu	23211	NM_015295	23347	Hs.8118	NM_015295	ENSG00000101596	SMCHD1	-	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
chr22.46288337.+	chr22	46288337	46288338	+	0	NA	Intergenic	Intergenic	84671	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr5.2391249.-	chr5	2391249	2391250	-	0	NA	Intergenic	Intergenic	-360520	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr1.160239893.+	chr1	160239893	160239894	+	0	NA	Intergenic	AluJo|SINE|Alu	-7543	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr8.56098967.+	chr8	56098967	56098968	+	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	83950	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr20.43342057.+	chr20	43342057	43342058	+	0	NA	Intergenic	AluSx|SINE|Alu	-1828	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr11.342932.-	chr11	342932	342933	-	0	NA	Intergenic	AluSz|SINE|Alu	22018	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr16.1979901.-	chr16	1979901	1979902	-	0	NA	Intergenic	CpG	11670	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr1.8012998.-	chr1	8012998	8012999	-	0	NA	Intergenic	Intergenic	8716	NM_007262	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr6.160985703.+	chr6	160985703	160985704	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53547	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr8.117309714.+	chr8	117309714	117309715	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27583	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr3.98624720.+	chr3	98624720	98624721	+	0	NA	Intergenic	AluY|SINE|Alu	-4187	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr1.78230546.-	chr1	78230546	78230547	-	0	NA	Intergenic	AluSz|SINE|Alu	4982	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr16.181413.-	chr16	181413	181414	-	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	-7284	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr10.73208005.-	chr10	73208005	73208006	-	0	NA	"intron (NM_022124, intron 3 of 67)"	"intron (NM_022124, intron 3 of 67)"	-51314	NM_001171932	64072	Hs.656032	NM_001171930	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
chr14.64299498.+	chr14	64299498	64299499	+	0	NA	Intergenic	AluJb|SINE|Alu	-20185	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr10.26961198.+	chr10	26961198	26961199	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25397	NM_014317	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1	"prenyl (decaprenyl) diphosphate synthase, subunit 1"	protein-coding
chrM.9317.+	chrM	9317	9318	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chrX.102529215.-	chrX	102529215	102529216	-	0	NA	"exon (NM_001012979, exon 3 of 3)"	"exon (NM_001012979, exon 3 of 3)"	-2582	NM_001012979	340543	Hs.403462	NM_001012979	ENSG00000204065	TCEAL5	-	transcription elongation factor A (SII)-like 5	protein-coding
chr10.104238448.-	chr10	104238448	104238449	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17278	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr16.88463200.+	chr16	88463200	88463201	+	0	NA	Intergenic	Intergenic	-30679	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr1.97029357.-	chr1	97029357	97029358	-	0	NA	Intergenic	AluSp|SINE|Alu	157818	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr20.60385389.-	chr20	60385389	60385390	-	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	-143329	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr11.69189568.+	chr11	69189568	69189569	+	0	NA	Intergenic	Intergenic	127946	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr3.42642366.-	chr3	42642366	42642367	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-206	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr5.176237152.-	chr5	176237152	176237153	-	0	NA	promoter-TSS (NM_133369)	promoter-TSS (NM_133369)	408	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 homolog A (C. elegans)	protein-coding
chr19.57960001.+	chr19	57960001	57960002	+	0	NA	Intergenic	AluY|SINE|Alu	8106	NM_020633	57191	Hs.736494	NM_020633	ENSG00000178201	VN1R1	V1RL1|VNR19I1|ZVNH1|ZVNR1	vomeronasal 1 receptor 1	protein-coding
chr18.11959851.+	chr18	11959851	11959852	+	0	NA	Intergenic	SVA_D|Other|Other	-21576	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr5.1770132.+	chr5	1770132	1770133	+	0	NA	Intergenic	L1MB5|LINE|L1	29824	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr6.123144113.-	chr6	123144113	123144114	-	0	NA	Intergenic	AluY|SINE|Alu	-34142	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr21.44478114.+	chr21	44478114	44478115	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17926	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr16.30022896.-	chr16	30022896	30022897	-	0	NA	promoter-TSS (NM_003586)	promoter-TSS (NM_003586)	495	NM_003586	8448	Hs.355281	NM_003586	ENSG00000149927	DOC2A	Doc2	"double C2-like domains, alpha"	protein-coding
chr8.3825565.+	chr8	3825565	3825566	+	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	1026763	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr9.719218.+	chr9	719218	719219	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12412	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr9.130867500.-	chr9	130867500	130867501	-	0	NA	"intron (NM_001265614, intron 6 of 10)"	AluSx1|SINE|Alu	-6739	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr2.109581796.+	chr2	109581796	109581797	+	0	NA	"intron (NM_022336, intron 1 of 11)"	AluY|SINE|Alu	24032	NM_022336	10913	Hs.171971	NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
chr20.35374344.+	chr20	35374344	35374345	+	0	NA	"intron (NR_038370, intron 1 of 13)"	CpG	197	NM_032013	57446	Hs.437338	NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
chr3.82554671.-	chr3	82554671	82554672	-	0	NA	Intergenic	MER52A|LTR|ERV1	743721	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr9.129229269.-	chr9	129229269	129229270	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56486	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr12.133328165.-	chr12	133328165	133328166	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10286	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr5.37840158.+	chr5	37840158	37840159	+	0	NA	promoter-TSS (NM_000514)	promoter-TSS (NM_000514)	-376	NM_000514	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
chr22.18131961.+	chr22	18131961	18131962	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6467	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr17.65843558.-	chr17	65843558	65843559	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21778	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr2.122878846.-	chr2	122878846	122878847	-	0	NA	Intergenic	AluY|SINE|Alu	-365725	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr2.176931824.+	chr2	176931824	176931825	+	0	NA	Intergenic	CpG	16866	NM_001080458	344191	Hs.452341	NM_001080458		EVX2	EVX-2	even-skipped homeobox 2	protein-coding
chr4.26862482.-	chr4	26862482	26862483	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-169	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr7.123388795.-	chr7	123388795	123388796	-	0	NA	"5' UTR (NM_003941, exon 1 of 11)"	"5' UTR (NM_003941, exon 1 of 11)"	-321	NM_003941	8976	Hs.731519	NM_003941	ENSG00000106299	WASL	N-WASP|NWASP	Wiskott-Aldrich syndrome-like	protein-coding
chr11.67346418.-	chr11	67346418	67346419	-	0	NA	Intergenic	AluY|SINE|Alu	4648	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr21.38330225.-	chr21	38330225	38330226	-	0	NA	"intron (NM_001242784, intron 2 of 11)"	AluY|SINE|Alu	-8731	NM_001242784	3141	Hs.732538	NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)	protein-coding
chr19.58125563.+	chr19	58125563	58125564	+	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	-267	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr6.25752967.+	chr6	25752967	25752968	+	0	NA	Intergenic	AluY|SINE|Alu	-1960	NM_005495	10050	Hs.282931	NM_005495	ENSG00000146039	SLC17A4	KAIA2138	"solute carrier family 17 (sodium phosphate), member 4"	protein-coding
chr19.40696473.+	chr19	40696473	40696474	+	0	NA	Intergenic	AluSx|SINE|Alu	-1178	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr2.210525410.+	chr2	210525410	210525411	+	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	81007	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr2.42801431.+	chr2	42801431	42801432	+	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	5760	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr22.32281864.-	chr22	32281864	32281865	-	0	NA	"intron (NM_001242896, intron 38 of 42)"	AluSg|SINE|Alu	58615	NM_003405	7533	Hs.226755	NM_003405	ENSG00000128245	YWHAH	YWHA1	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide"	protein-coding
chr8.26148328.-	chr8	26148328	26148329	-	0	NA	promoter-TSS (NM_002717)	promoter-TSS (NM_002717)	679	NM_002717	5520	Hs.146339	NM_001177591	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	"protein phosphatase 2, regulatory subunit B, alpha"	protein-coding
chr19.18416242.-	chr19	18416242	18416243	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17759	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chrX.39953492.+	chrX	39953492	39953493	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	CpG	3227	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr12.79439007.-	chr12	79439007	79439008	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	426	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr2.136760842.+	chr2	136760842	136760843	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17620	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr10.28821802.+	chr10	28821802	28821803	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	380	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr15.57662571.+	chr15	57662571	57662572	+	0	NA	Intergenic	AluSx|SINE|Alu	-6132	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr2.192110019.+	chr2	192110019	192110020	+	0	NA	promoter-TSS (NM_012223)	promoter-TSS (NM_012223)	-88	NM_001130158	4430	Hs.439620	NM_001130158	ENSG00000128641	MYO1B	myr1	myosin IB	protein-coding
chr2.242763156.-	chr2	242763156	242763157	-	0	NA	Intergenic	Intergenic	-11126	NM_001167602	129807	Hs.551747	NM_001167599	ENSG00000204099	NEU4	-	sialidase 4	protein-coding
chr4.177147018.-	chr4	177147018	177147019	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30196	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr15.24084650.-	chr15	24084650	24084651	-	0	NA	Intergenic	AluY|SINE|Alu	152200	NM_002487	4692	Hs.50130	NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	"necdin, melanoma antigen (MAGE) family member"	protein-coding
chr11.2143874.-	chr11	2143874	2143875	-	0	NA	Intergenic	Intergenic	-11565	NR_030158	619552		NR_030158		MIR483	MIRN483|hsa-mir-483	microRNA 483	miscRNA
chr17.8342579.-	chr17	8342579	8342580	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3409	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr17.40543783.+	chr17	40543783	40543784	+	0	NA	Intergenic	AluJr4|SINE|Alu	-3270	NM_139276	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr4.1541956.-	chr4	1541956	1541957	-	0	NA	Intergenic	Intergenic	-143762	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr1.65532994.-	chr1	65532994	65532995	-	0	NA	Intergenic	CpG	8803	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr5.178491475.-	chr5	178491475	178491476	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3868	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr10.135008717.-	chr10	135008717	135008718	-	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	-34746	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr11.342900.-	chr11	342900	342901	-	0	NA	Intergenic	AluSz|SINE|Alu	21986	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr14.78062664.+	chr14	78062664	78062665	+	0	NA	"intron (NM_004863, intron 2 of 11)"	AluY|SINE|Alu	20446	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	"serine palmitoyltransferase, long chain base subunit 2"	protein-coding
chr4.186887793.+	chr4	186887793	186887794	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9923	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr10.28933543.-	chr10	28933543	28933544	-	0	NA	Intergenic	AluSz|SINE|Alu	32881	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	protein-coding
chr8.146017418.-	chr8	146017418	146017419	-	0	NA	"exon (NM_000973, exon 2 of 6)"	"exon (NM_000973, exon 2 of 6)"	-311	NM_033301	6132	Hs.178551	NM_000973	ENSG00000161016	RPL8	L8	ribosomal protein L8	protein-coding
chr12.133141212.-	chr12	133141212	133141213	-	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	-45825	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr5.693671.+	chr5	693671	693672	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-161	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr4.513543.+	chr4	513543	513544	+	0	NA	"intron (NM_001127178, intron 6 of 12)"	"intron (NM_001127178, intron 6 of 12)"	20554	NM_001127178	54872	Hs.7099	NM_001127178	ENSG00000174227	PIGG	GPI7|LAS21|PRO4405|RLGS1930	"phosphatidylinositol glycan anchor biosynthesis, class G"	protein-coding
chr16.4664283.-	chr16	4664283	4664284	-	0	NA	"intron (NM_145253, intron 1 of 2)"	CpG	-644	NM_145253	124402	Hs.513313	NM_145253	ENSG00000153443	UBALD1	FAM100A	UBA-like domain containing 1	protein-coding
chr8.110510475.-	chr8	110510475	110510476	-	0	NA	"intron (NM_177531, intron 65 of 77)"	AluYb8|SINE|Alu	41454	NM_198120	9166	Hs.409368	NM_004215	ENSG00000147654	EBAG9	EB9|PDAF|RCAS1	"estrogen receptor binding site associated, antigen, 9"	protein-coding
chr10.97383339.-	chr10	97383339	97383340	-	0	NA	"intron (NM_001017423, intron 11 of 17)"	AluSp|SINE|Alu	-33228	NM_001017423	5832	Hs.500645	NM_001017423	ENSG00000059573	ALDH18A1	ARCL3A|GSAS|P5CS|PYCS	"aldehyde dehydrogenase 18 family, member A1"	protein-coding
chr19.17836934.-	chr19	17836934	17836935	-	0	NA	"exon (NM_018174, exon 5 of 7)"	"exon (NM_018174, exon 5 of 7)"	-6631	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chr8.3825579.+	chr8	3825579	3825580	+	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	1026749	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr16.1845095.-	chr16	1845095	1845096	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	186	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.73389543.-	chr7	73389543	73389544	-	0	NA	Intergenic	Intergenic	52884	NM_001081753	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr17.4422237.-	chr17	4422237	4422238	-	0	NA	"intron (NM_001124758, intron 2 of 12)"	"intron (NM_001124758, intron 2 of 12)"	-20108	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
chr14.102954836.-	chr14	102954836	102954837	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21292	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chrX.86721006.-	chrX	86721006	86721007	-	0	NA	Intergenic	SVA_C|Other|Other	51709	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr8.60674697.+	chr8	60674697	60674698	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519257	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr4.38190464.-	chr4	38190464	38190465	-	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-68889	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr9.127626462.+	chr9	127626462	127626463	+	0	NA	Intergenic	Intergenic	-2222	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr19.23432285.-	chr19	23432285	23432286	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-887	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr2.232078215.+	chr2	232078215	232078216	+	0	NA	"intron (NM_025139, intron 3 of 20)"	AluSg|SINE|Alu	14921	NM_001271466	80210	Hs.471610	NM_001271466	ENSG00000135931	ARMC9	ARM|KU-MEL-1	armadillo repeat containing 9	protein-coding
chr1.21893060.-	chr1	21893060	21893061	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57202	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr7.155246308.-	chr7	155246308	155246309	-	0	NA	Intergenic	Intergenic	4516	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr6.168352122.+	chr6	168352122	168352123	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25497	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chrX.21676451.-	chrX	21676451	21676452	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	3	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr16.84879526.+	chr16	84879526	84879527	+	0	NA	"intron (NM_031476, intron 3 of 14)"	"intron (NM_031476, intron 3 of 14)"	25939	NM_031476	83716	Hs.617091	NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
chr16.74847253.-	chr16	74847253	74847254	-	0	NA	Intergenic	Intergenic	38524	NM_024306	79152	Hs.461329	NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
chr3.33482718.+	chr3	33482718	33482719	+	0	NA	promoter-TSS (NM_001128161)	promoter-TSS (NM_001128161)	-821	NM_001128161	7342	Hs.729120	NM_001128160	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1 (LBP-1a)	protein-coding
chr20.32072345.+	chr20	32072345	32072346	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5583	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chrX.40027714.-	chrX	40027714	40027715	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	CpG	-8868	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr20.5213465.-	chr20	5213465	5213466	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81550	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr17.63480261.-	chr17	63480261	63480262	-	0	NA	Intergenic	SVA_D|Other|Other	-77479	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
chr16.4588816.+	chr16	4588816	4588817	+	0	NA	promoter-TSS (NM_013399)	promoter-TSS (NM_013399)	0	NM_001199055	29965	Hs.654653	NM_001199054	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death-inducing p53 target 1	protein-coding
chr22.46522767.-	chr22	46522767	46522768	-	0	NA	Intergenic	Intergenic	-13201	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr13.59346936.-	chr13	59346936	59346937	-	0	NA	Intergenic	AluY|SINE|Alu	-1141147	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr1.5762912.+	chr1	5762912	5762913	+	0	NA	Intergenic	AluSp|SINE|Alu	138781	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	miscRNA
chr7.105596474.+	chr7	105596474	105596475	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7183	NM_152750	222256	Hs.150120	NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin-related family member 3	protein-coding
chr5.137550340.+	chr5	137550340	137550341	+	0	NA	Intergenic	AluY|SINE|Alu	-1308	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr7.6491697.+	chr7	6491697	6491698	+	0	NA	Intergenic	AluSc|SINE|Alu	-4054	NM_001142936	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr20.20772516.-	chr20	20772516	20772517	-	0	NA	Intergenic	LTR16A2|LTR|ERVL	79250	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr19.2322082.-	chr19	2322082	2322083	-	0	NA	"intron (NM_016199, intron 3 of 3)"	"intron (NM_016199, intron 3 of 3)"	-6532	NM_016199	51690	Hs.512610	NM_016199	ENSG00000130332	LSM7	YNL147W	"LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr4.65343999.+	chr4	65343999	65344000	+	0	NA	Intergenic	AluY|SINE|Alu	-68821	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr22.31744365.-	chr22	31744365	31744366	-	0	NA	Intergenic	AluSp|SINE|Alu	2116	NM_014323	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr16.80278046.+	chr16	80278046	80278047	+	0	NA	Intergenic	SVA_F|Other|Other	-296808	NM_130897	83657	Hs.98849	NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	"dynein, light chain, roadblock-type 2"	protein-coding
chr2.48010459.+	chr2	48010459	48010460	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	238	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr17.80206862.-	chr17	80206862	80206863	-	0	NA	"exon (NM_001893, exon 8 of 9)"	"exon (NM_001893, exon 8 of 9)"	-13212	NM_001206952	9123	Hs.500761	NM_001042422	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	"solute carrier family 16, member 3 (monocarboxylic acid transporter 4)"	protein-coding
chr19.744282.+	chr19	744282	744283	+	0	NA	"intron (NM_002579, intron 8 of 8)"	AluY|SINE|Alu	-6864	NM_173481	126353	Hs.439180	NM_173481	ENSG00000099812	C19orf21	-	chromosome 19 open reading frame 21	protein-coding
chr3.50701721.-	chr3	50701721	50701722	-	0	NA	Intergenic	AluY|SINE|Alu	10790	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr8.11312296.+	chr8	11312296	11312297	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11980	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr19.7123159.-	chr19	7123159	7123160	-	0	NA	"intron (NM_000208, intron 17 of 21)"	"intron (NM_000208, intron 17 of 21)"	-53688	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr1.110881134.-	chr1	110881134	110881135	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-659	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr12.104506926.+	chr12	104506926	104506927	+	0	NA	Intergenic	AluY|SINE|Alu	25114	NM_006166	4801	Hs.84928	NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	"nuclear transcription factor Y, beta"	protein-coding
chr1.117278451.-	chr1	117278451	117278452	-	0	NA	Intergenic	L2a|LINE|L2	18635	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr2.152219151.+	chr2	152219151	152219152	+	0	NA	"intron (NM_007115, intron 1 of 5)"	AluY|SINE|Alu	5045	NM_007115	7130	Hs.437322	NM_007115	ENSG00000123610	TNFAIP6	TSG-6|TSG6	"tumor necrosis factor, alpha-induced protein 6"	protein-coding
chr2.101924983.+	chr2	101924983	101924984	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	195	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr2.71559433.-	chr2	71559433	71559434	-	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	-548	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr19.6307845.-	chr19	6307845	6307846	-	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	-25795	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr1.3658589.+	chr1	3658589	3658590	+	0	NA	"intron (NR_033710, intron 3 of 5)"	"intron (NR_033710, intron 3 of 5)"	4746	NR_033712	57212	Hs.49658	NM_207306	ENSG00000227372	TP73-AS1	KIAA0495|PDAM	TP73 antisense RNA 1	miscRNA
chr4.77348100.-	chr4	77348100	77348101	-	0	NA	Intergenic	AluY|SINE|Alu	8153	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr1.142618959.+	chr1	142618959	142618960	+	0	NA	Intergenic	CpG	94646	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	"ankyrin repeat domain 20 family, member A12, pseudogene"	pseudo
chr5.14460488.+	chr5	14460488	14460489	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121403	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr20.4729601.+	chr20	4729601	4729602	+	0	NA	Intergenic	Intergenic	-8287	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr11.66887552.-	chr11	66887552	66887553	-	0	NA	"intron (NM_012308, intron 1 of 20)"	"intron (NM_012308, intron 1 of 20)"	-812	NR_027473	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr16.4051357.+	chr16	4051357	4051358	+	0	NA	"intron (NM_001116, intron 3 of 10)"	L1MD3|LINE|L1	114829	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr13.31024064.+	chr13	31024064	31024065	+	0	NA	Intergenic	AluSq2|SINE|Alu	16017	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr19.15037594.+	chr19	15037594	15037595	+	0	NA	Intergenic	AluSp|SINE|Alu	-14707	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr11.2051336.-	chr11	2051336	2051337	-	0	NA	Intergenic	Intergenic	32271	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr6.2221755.+	chr6	2221755	2221756	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24113	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr8.56758267.-	chr8	56758267	56758268	-	0	NA	Intergenic	AluSx3|SINE|Alu	34119	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr10.466158.+	chr10	466158	466159	+	0	NA	"intron (NM_014974, intron 5 of 36)"	CpG	221560	NR_049884	100847086		NR_049884		MIR5699	-	microRNA 5699	miscRNA
chr10.65213736.+	chr10	65213736	65213737	+	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSx|SINE|Alu	-11253	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr19.1969426.-	chr19	1969426	1969427	-	0	NA	"intron (NM_001319, intron 1 of 11)"	"intron (NM_001319, intron 1 of 11)"	14878	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	miscRNA
chr10.135270900.-	chr10	135270900	135270901	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3468	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr16.14165057.+	chr16	14165057	14165058	+	0	NA	promoter-TSS (NM_014048)	promoter-TSS (NM_014048)	-139	NM_014048	57496	Hs.49143	NM_014048	ENSG00000186260	MKL2	MRTF-B|NPD001	MKL/myocardin-like 2	protein-coding
chr1.23885820.-	chr1	23885820	23885821	-	0	NA	"exon (NM_002167, exon 1 of 3)"	"exon (NM_002167, exon 1 of 3)"	-465	NM_002167	3399	Hs.76884	NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	"inhibitor of DNA binding 3, dominant negative helix-loop-helix protein"	protein-coding
chr9.36859987.-	chr9	36859987	36859988	-	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	-4318	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr3.48962530.-	chr3	48962530	48962531	-	0	NA	"intron (NM_006321, intron 2 of 15)"	AluSx|SINE|Alu	5712	NM_001123040	646450	Hs.720727	NM_001123040	ENSG00000221883	ARIH2OS	C3orf71	ariadne homolog 2 opposite strand	protein-coding
chr7.155370490.+	chr7	155370490	155370491	+	0	NA	Intergenic	Intergenic	-43951	NM_001103176	285888	Hs.146751	NM_001103176	ENSG00000146910	CNPY1	-	canopy 1 homolog (zebrafish)	protein-coding
chr5.3764230.+	chr5	3764230	3764231	+	0	NA	Intergenic	Intergenic	168062	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr2.236999647.-	chr2	236999647	236999648	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-77005	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr11.1529326.+	chr11	1529326	1529327	+	0	NA	"intron (NM_053005, intron 2 of 5)"	"intron (NM_053005, intron 2 of 5)"	-21378	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr6.1610256.+	chr6	1610256	1610257	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-425	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr5.176292800.+	chr5	176292800	176292801	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33533	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr17.3580077.+	chr17	3580077	3580078	+	0	NA	"intron (NM_002561, intron 11 of 11)"	AluSx1|SINE|Alu	7987	NM_001014764	83460	Hs.30011	NM_001014764	ENSG00000127774	EMC6	TMEM93	ER membrane protein complex subunit 6	protein-coding
chr1.38342273.+	chr1	38342273	38342274	+	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	-16981	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr3.101291367.-	chr3	101291367	101291368	-	0	NA	Intergenic	AluSg|SINE|Alu	1675	NM_020357	57092	Hs.275865	NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
chr7.87681604.-	chr7	87681604	87681605	-	0	NA	"intron (NM_004194, intron 3 of 28)"	AluY|SINE|Alu	-118038	NM_021721	53616	Hs.256398	NM_004194	ENSG00000008277	ADAM22	ADAM 22|MDC2	ADAM metallopeptidase domain 22	protein-coding
chr19.49964861.+	chr19	49964861	49964862	+	0	NA	"intron (NM_001145396, intron 5 of 15)"	"intron (NM_001145396, intron 5 of 15)"	8388	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr11.122873319.-	chr11	122873319	122873320	-	0	NA	Intergenic	AluSx1|SINE|Alu	14955	NR_027288	341056	Hs.620309	NR_027288		LOC341056	-	SUMO1 activating enzyme subunit 1 pseudogene	pseudo
chrX.27178528.-	chrX	27178528	27178529	-	0	NA	Intergenic	AluY|SINE|Alu	-302930	NR_002784	139420	Hs.350673	NR_002784		SMEK3P	FLFL3P|smk1	"SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene"	pseudo
chr3.174240463.+	chr3	174240463	174240464	+	0	NA	Intergenic	AluY|SINE|Alu	-336648	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr1.3103269.-	chr1	3103269	3103270	-	0	NA	"intron (NM_199454, intron 2 of 16)"	CpG-245	-58730	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr8.27695158.+	chr8	27695158	27695159	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	191	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr9.139775644.-	chr9	139775644	139775645	-	0	NA	Intergenic	AluSp|SINE|Alu	5321	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr9.425349.+	chr9	425349	425350	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44945	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr7.121013905.+	chr7	121013905	121013906	+	0	NA	"intron (NM_001040020, intron 3 of 9)"	AluY|SINE|Alu	22517	NM_014888	10447	Hs.434053	NM_001040020	ENSG00000196937	FAM3C	ILEI	"family with sequence similarity 3, member C"	protein-coding
chr6.167600284.-	chr6	167600284	167600285	-	0	NA	Intergenic	Intergenic	-16203	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr11.100596573.-	chr11	100596573	100596574	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38166	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr3.42642500.-	chr3	42642500	42642501	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-72	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr16.89034187.-	chr16	89034187	89034188	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9317	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr20.62108116.+	chr20	62108116	62108117	+	0	NA	Intergenic	Intergenic	-4123	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr15.75182435.+	chr15	75182435	75182436	+	0	NA	promoter-TSS (NM_002435)	promoter-TSS (NM_002435)	25	NM_002435	4351	Hs.75694	NM_002435	ENSG00000178802	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
chr10.43427850.+	chr10	43427850	43427851	+	0	NA	Intergenic	Intergenic	-65161	NR_049836	100847014		NR_049836	ENSG00000263795	MIR5100	-	microRNA 5100	miscRNA
chr2.119592183.+	chr2	119592183	119592184	+	0	NA	Intergenic	Intergenic	13576	NM_001426	2019	Hs.271977	NM_001426	ENSG00000163064	EN1	-	engrailed homeobox 1	protein-coding
chr22.38336356.-	chr22	38336356	38336357	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13298	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr12.33592630.-	chr12	33592630	33592631	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-124	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr4.177147008.+	chr4	177147008	177147009	+	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	-30186	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chrX.26892070.-	chrX	26892070	26892071	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-315616	NR_001559	139538	Hs.447377	NR_001559	ENSG00000259849	VENTXP1	CT18|NA88A|VENTX2P1	VENT homeobox pseudogene 1	pseudo
chr12.133328235.+	chr12	133328235	133328236	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10216	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chrX.113575436.+	chrX	113575436	113575437	+	0	NA	Intergenic	AluJb|SINE|Alu	-243115	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr1.6471009.+	chr1	6471009	6471010	+	0	NA	Intergenic	AluSz|SINE|Alu	8970	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr19.14156276.-	chr19	14156276	14156277	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13695	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr17.18575687.+	chr17	18575687	18575688	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	807	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr1.30574811.-	chr1	30574811	30574812	-	0	NA	Intergenic	Intergenic	616808	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	miscRNA
chr12.33352542.+	chr12	33352542	33352543	+	0	NA	Intergenic	LTR12|LTR|ERV1	240212	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr6.167607736.-	chr6	167607736	167607737	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23655	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr7.130728485.-	chr7	130728485	130728486	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	-63304	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr15.20545746.+	chr15	20545746	20545747	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	57749	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr9.21968322.+	chr9	21968322	21968323	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1184	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr5.154071100.+	chr5	154071100	154071101	+	0	NA	Intergenic	Intergenic	-21362	NM_015315	23367	Hs.292078	NM_033551	ENSG00000155506	LARP1	LARP	"La ribonucleoprotein domain family, member 1"	protein-coding
chr2.14112579.-	chr2	14112579	14112580	-	0	NA	Intergenic	AluY|SINE|Alu	660231	NM_145175	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	"family with sequence similarity 84, member A"	protein-coding
chr9.131639090.+	chr9	131639090	131639091	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5264	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr20.19431514.+	chr20	19431514	19431515	+	0	NA	"intron (NM_020689, intron 2 of 16)"	AluSz|SINE|Alu	-166274	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	miscRNA
chr9.131584968.+	chr9	131584968	131584969	+	0	NA	TTS (NM_004435)	TTS (NM_004435)	4189	NM_004435	2021	Hs.224137	NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
chr7.105335587.-	chr7	105335587	105335588	-	0	NA	"intron (NM_020725, intron 3 of 11)"	AluSx1|SINE|Alu	15978	NM_138495	222255	Hs.489603	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
chr8.104851152.-	chr8	104851152	104851153	-	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	-19736	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr2.101214322.+	chr2	101214322	101214323	+	0	NA	Intergenic	AluY|SINE|Alu	34904	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr18.20879350.+	chr18	20879350	20879351	+	0	NA	"intron (NM_032933, intron 14 of 14)"	L3|LINE|CR1	138575	NM_032933	85019	Hs.137562	NM_032933	ENSG00000134490	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
chr14.104842688.+	chr14	104842688	104842689	+	0	NA	Intergenic	Intergenic	-203368	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chr7.795202.-	chr7	795202	795203	-	0	NA	"intron (NR_075098, intron 5 of 12)"	"intron (NR_075098, intron 5 of 12)"	27889	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr2.99439643.+	chr2	99439643	99439644	+	0	NA	"exon (NM_207362, exon 7 of 10)"	"exon (NM_207362, exon 7 of 10)"	-92054	NM_012214	11320	Hs.177576	NM_001160154	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A"	protein-coding
chr2.231536958.+	chr2	231536958	231536959	+	0	NA	Intergenic	AluY|SINE|Alu	28286	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LOC151475	-	uncharacterized LOC151475	miscRNA
chr20.61885865.+	chr20	61885865	61885866	+	0	NA	promoter-TSS (NM_152864)	promoter-TSS (NM_152864)	27	NM_152864	128414	Hs.46627	NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	Na+/K+ transporting ATPase interacting 4	protein-coding
chr7.63023257.-	chr7	63023257	63023258	-	0	NA	Intergenic	Intergenic	58211	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr6.137949741.+	chr6	137949741	137949742	+	0	NA	Intergenic	AluY|SINE|Alu	-134210	NM_175747	167826	Hs.195398	NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
chr5.36143009.-	chr5	36143009	36143010	-	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	-5081	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr6.15189312.-	chr6	15189312	15189313	-	0	NA	Intergenic	SVA_F|Other|Other	56894	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr17.80832328.+	chr17	80832328	80832329	+	0	NA	"intron (NM_005993, intron 14 of 38)"	"intron (NM_005993, intron 14 of 38)"	-34397	NM_024702	79755	Hs.653124	NM_024702	ENSG00000141579	ZNF750	ZFP750	zinc finger protein 750	protein-coding
chr10.104209693.-	chr10	104209693	104209694	-	0	NA	TTS (NM_024886)	TTS (NM_024886)	-119	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr2.202046057.+	chr2	202046057	202046058	+	0	NA	Intergenic	AluSz|SINE|Alu	-1564	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr8.120878151.-	chr8	120878151	120878152	-	0	NA	Intergenic	AluSx1|SINE|Alu	7749	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr8.28449377.-	chr8	28449377	28449378	-	0	NA	Intergenic	AluSg4|SINE|Alu	86678	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	miscRNA
chr8.14882352.-	chr8	14882352	14882353	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171333	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr1.46768280.-	chr1	46768280	46768281	-	0	NA	"intron (NM_006369, intron 1 of 9)"	CpG	-758	NM_006369	10489	Hs.144941	NM_006369	ENSG00000132128	LRRC41	MUF1|RP4-636H5.2	leucine rich repeat containing 41	protein-coding
chr16.443646.-	chr16	443646	443647	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3546	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr3.196754758.+	chr3	196754758	196754759	+	0	NA	"exon (NM_033316, exon 2 of 7)"	"exon (NM_033316, exon 2 of 7)"	1928	NM_033316	4241	Hs.184727	NM_005929	ENSG00000163975	MFI2	CD228|MAP97|MTF1	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding
chrX.133643956.+	chrX	133643956	133643957	+	0	NA	Intergenic	L1PA10|LINE|L1	30336	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr14.23845003.+	chr14	23845003	23845004	+	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	-1014	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr5.22207146.+	chr5	22207146	22207147	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64685	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr3.188219429.+	chr3	188219429	188219430	+	0	NA	"intron (NM_001167672, intron 3 of 9)"	AluY|SINE|Alu	276236	NM_001167671	4026	Hs.720220	NM_001167671	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
chr20.49411542.+	chr20	49411542	49411543	+	0	NA	promoter-TSS (NM_017843)	promoter-TSS (NM_017843)	75	NM_001010974	55653	Hs.381178	NM_001010974	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
chr2.27735258.+	chr2	27735258	27735259	+	0	NA	"intron (NM_001486, intron 16 of 18)"	AluSg|SINE|Alu	15552	NM_001486	2646	Hs.89771	NM_001486	ENSG00000084734	GCKR	FGQTL5|GKRP	glucokinase (hexokinase 4) regulator	protein-coding
chr3.133292587.+	chr3	133292587	133292588	+	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	153	NM_017548	55573	Hs.518265	NM_001134422	ENSG00000091527	CDV3	H41	CDV3 homolog (mouse)	protein-coding
chrX.133565049.-	chrX	133565049	133565050	-	0	NA	Intergenic	AluSp|SINE|Alu	29126	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr6.2765770.-	chr6	2765770	2765771	-	0	NA	"5' UTR (NM_020135, exon 1 of 7)"	"5' UTR (NM_020135, exon 1 of 7)"	-104	NM_130395	56897	Hs.236828	NM_020135	ENSG00000124535	WRNIP1	RP11-420G6.2|WHIP|bA420G6.2	Werner helicase interacting protein 1	protein-coding
chr1.3560989.+	chr1	3560989	3560990	+	0	NA	"intron (NM_017818, intron 3 of 11)"	CpG	5682	NM_017818	49856	Hs.31714	NM_017818	ENSG00000116213	WRAP73	WDR8	"WD repeat containing, antisense to TP73"	protein-coding
chr8.43413760.-	chr8	43413760	43413761	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266175	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr6.31211965.-	chr6	31211965	31211966	-	0	NA	Intergenic	SVA_F|Other|Other	-27948	NM_001243042	3107	Hs.743218	NM_001243042	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLC-C|PSORS1	"major histocompatibility complex, class I, C"	protein-coding
chr6.34857479.-	chr6	34857479	34857480	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-441	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr3.177829371.+	chr3	177829371	177829372	+	0	NA	Intergenic	AluSx|SINE|Alu	-307618	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	KCNMB2-IT1	-	KCNMB2 intronic transcript 1 (non-protein coding)	miscRNA
chr16.924573.+	chr16	924573	924574	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69130	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr2.239058217.+	chr2	239058217	239058218	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10854	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr2.128432485.+	chr2	128432485	128432486	+	0	NA	"intron (NM_001136037, intron 1 of 10)"	CpG	279	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr6.168395130.+	chr6	168395130	168395131	+	0	NA	Intergenic	AluSx|SINE|Alu	-17511	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr2.241363418.-	chr2	241363418	241363419	-	0	NA	Intergenic	Intergenic	11697	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr19.47524394.+	chr19	47524394	47524395	+	0	NA	"exon (NM_002517, exon 1 of 11)"	"exon (NM_002517, exon 1 of 11)"	251	NM_002517	4861	Hs.79564	NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
chr20.14910676.+	chr20	14910676	14910677	+	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	-515	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr22.22259615.-	chr22	22259615	22259616	-	0	NA	Intergenic	AluSq2|SINE|Alu	37645	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr2.71559407.+	chr2	71559407	71559408	+	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	522	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr9.140113422.+	chr9	140113422	140113423	+	0	NA	"3' UTR (NM_014434, exon 14 of 14)"	"3' UTR (NM_014434, exon 14 of 14)"	2353	NM_031297	727800	Hs.512767	NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
chr16.2770942.-	chr16	2770942	2770943	-	0	NA	promoter-TSS (NM_031948)	promoter-TSS (NM_031948)	390	NM_031948	83886	Hs.332878	NM_031948		PRSS27	CAPH2|MPN	"protease, serine 27"	protein-coding
chr7.63233376.-	chr7	63233376	63233377	-	0	NA	Intergenic	Intergenic	-151908	NR_036270	100422848		NR_036270	ENSG00000265214	MIR4283-2	-	microRNA 4283-2	miscRNA
chr7.2716319.-	chr7	2716319	2716320	-	0	NA	Intergenic	Intergenic	2844	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr19.2400870.-	chr19	2400870	2400871	-	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	-11086	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr7.1542296.+	chr7	1542296	1542297	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1722	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr10.33625741.+	chr10	33625741	33625742	+	0	NA	Intergenic	CpG-2701	-1908	NM_001024629	8829	Hs.653996	NM_001024628	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
chr17.66195770.-	chr17	66195770	66195771	-	0	NA	"non-coding (NR_027283, exon 1 of 1)"	"non-coding (NR_027283, exon 1 of 1)"	-969	NR_027283	440461	Hs.661522	NR_027283		LOC440461	-	Rho GTPase activating protein 27 pseudogene	pseudo
chr18.12006946.-	chr18	12006946	12006947	-	0	NA	"intron (NM_014214, intron 2 of 7)"	AluSx3|SINE|Alu	-25519	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr1.55483738.-	chr1	55483738	55483739	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19121	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr8.142427884.-	chr8	142427884	142427885	-	0	NA	Intergenic	CpG	4123	NM_007079	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chrX.153736365.+	chrX	153736365	153736366	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8201	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr12.49163837.-	chr12	49163837	49163838	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluY|SINE|Alu	-1983	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr8.92785506.+	chr8	92785506	92785507	+	0	NA	Intergenic	AluYc3|SINE|Alu	244402	NM_175636	862	Hs.739194	NM_001198625	ENSG00000079102	RUNX1T1	AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	"runt-related transcription factor 1; translocated to, 1 (cyclin D-related)"	protein-coding
chr7.99070054.-	chr7	99070054	99070055	-	0	NA	promoter-TSS (NM_213603)	promoter-TSS (NM_213603)	461	NM_001013258	285989	Hs.440384	NM_001013258	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
chr19.11104352.+	chr19	11104352	11104353	+	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	9524	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr19.16136959.+	chr19	16136959	16136960	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7564	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr4.69917188.+	chr4	69917188	69917189	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-31075	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr7.12751299.-	chr7	12751299	12751300	-	0	NA	Intergenic	AluY|SINE|Alu	-24388	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr11.1240154.+	chr11	1240154	1240155	+	0	NA	Intergenic	Intergenic	-4141	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr14.103988595.-	chr14	103988595	103988596	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-601	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr15.83248413.+	chr15	83248413	83248414	+	0	NA	"intron (NM_030594, intron 2 of 11)"	AluYb8|SINE|Alu	-7840	NM_001079533	64506	Hs.547988	NM_001079533	ENSG00000214575	CPEB1	CEBP|CPE-BP1|CPEB	cytoplasmic polyadenylation element binding protein 1	protein-coding
chr3.52918368.+	chr3	52918368	52918369	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13229	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chrX.122993632.-	chrX	122993632	122993633	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	30	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chrX.11749436.-	chrX	11749436	11749437	-	0	NA	Intergenic	AluSx|SINE|Alu	26842	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr6.138984643.+	chr6	138984643	138984644	+	0	NA	Intergenic	AluSp|SINE|Alu	-28162	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr8.98771767.+	chr8	98771767	98771768	+	0	NA	Intergenic	AluSq10|SINE|Alu	-16042	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr16.90015170.-	chr16	90015170	90015171	-	0	NA	promoter-TSS (NM_001242822)	promoter-TSS (NM_001242822)	-31	NM_207514	54849	Hs.62771	NM_001242816	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog (mouse)	protein-coding
chr19.3810414.-	chr19	3810414	3810415	-	0	NA	"intron (NM_015174, intron 16 of 18)"	"intron (NM_015174, intron 16 of 18)"	8604	NM_002378	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chr3.3132411.+	chr3	3132411	3132412	+	0	NA	"intron (NM_175728, intron 9 of 9)"	AluY|SINE|Alu	19647	NM_175726	3568	Hs.68876	NM_000564	ENSG00000091181	IL5RA	CD125|CDw125|HSIL5R3|IL5R	"interleukin 5 receptor, alpha"	protein-coding
chr7.61969454.-	chr7	61969454	61969455	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-794980	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr10.134216477.-	chr10	134216477	134216478	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5775	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr17.710507.+	chr17	710507	710508	+	0	NA	"intron (NM_022463, intron 5 of 7)"	"intron (NM_022463, intron 5 of 7)"	-24936	NM_016080	51031	Hs.595572	NM_016080	ENSG00000167699	GLOD4	C17orf25|HC71	glyoxalase domain containing 4	protein-coding
chr5.114712360.+	chr5	114712360	114712361	+	0	NA	Intergenic	MIRb|SINE|MIR	-79902	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr22.39040987.+	chr22	39040987	39040988	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11647	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr12.50621273.+	chr12	50621273	50621274	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4785	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr8.144358175.-	chr8	144358175	144358176	-	0	NA	"exon (NM_138465, exon 4 of 4)"	"exon (NM_138465, exon 4 of 4)"	-8568	NM_138465	2738	Hs.400533	NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
chr9.90728991.-	chr9	90728991	90728992	-	0	NA	Intergenic	REP522|Satellite|telo	-20909	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	"SPATA31 subfamily C, member 2"	protein-coding
chr1.156030258.-	chr1	156030258	156030259	-	0	NA	promoter-TSS (NM_020387)	promoter-TSS (NM_020387)	708	NM_020387	57111	Hs.632469	NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	"RAB25, member RAS oncogene family"	protein-coding
chr16.8974127.+	chr16	8974127	8974128	+	0	NA	Intergenic	Intergenic	-11264	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr1.224601899.-	chr1	224601899	224601900	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15886	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr7.936492.+	chr7	936492	936493	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20301	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr3.83453429.+	chr3	83453429	83453430	+	0	NA	Intergenic	MER52C|LTR|ERV1	1465297	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr1.10727921.+	chr1	10727921	10727922	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128812	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr1.24513590.+	chr1	24513590	24513591	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	175	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr4.5094258.+	chr4	5094258	5094259	+	0	NA	"intron (NM_018401, intron 1 of 11)"	AluSx1|SINE|Alu	40731	NM_018401	55351	Hs.133062	NM_018401	ENSG00000152953	STK32B	HSA250839|STK32|STKG6|YANK2	serine/threonine kinase 32B	protein-coding
chr7.158462314.+	chr7	158462314	158462315	+	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	35206	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr19.23432263.-	chr19	23432263	23432264	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-909	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr17.43028788.-	chr17	43028788	43028789	-	0	NA	Intergenic	AluSp|SINE|Alu	3709	NM_001264573	146909	Hs.135094	NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
chr11.9503848.+	chr11	9503848	9503849	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21336	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr10.133058458.-	chr10	133058458	133058459	-	0	NA	"intron (NM_174937, intron 4 of 11)"	CpG	-51526	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr19.10041345.+	chr19	10041345	10041346	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5725	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr2.136403829.-	chr2	136403829	136403830	-	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	19138	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr7.1590465.+	chr7	1590465	1590466	+	0	NA	"exon (NM_001097620, exon 3 of 9)"	"exon (NM_001097620, exon 3 of 9)"	5601	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr17.45349555.-	chr17	45349555	45349556	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18347	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr7.158462216.-	chr7	158462216	158462217	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35304	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr11.47396010.+	chr11	47396010	47396011	+	0	NA	"intron (NM_001080547, intron 2 of 4)"	"intron (NM_001080547, intron 2 of 4)"	4117	NM_003120	6688	Hs.502511	NM_001080547	ENSG00000066336	SPI1	OF|PU.1|SFPI1|SPI-1|SPI-A	spleen focus forming virus (SFFV) proviral integration oncogene spi1	protein-coding
chr6.168219513.+	chr6	168219513	168219514	+	0	NA	Intergenic	AluSp|SINE|Alu	7963	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr20.45935915.-	chr20	45935915	45935916	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11331	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr2.120775612.-	chr2	120775612	120775613	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4827	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr19.38836193.-	chr19	38836193	38836194	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9750	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr8.128328717.-	chr8	128328717	128328718	-	0	NA	Intergenic	Intergenic	99140	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr1.229761492.+	chr1	229761492	229761493	+	0	NA	promoter-TSS (NM_014777)	promoter-TSS (NM_014777)	302	NM_001025247	27097	Hs.270621	NM_001025247	ENSG00000135801	TAF5L	PAF65B	"TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa"	protein-coding
chr12.31575293.-	chr12	31575293	31575294	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96134	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr1.217314048.+	chr1	217314048	217314049	+	0	NA	Intergenic	Intergenic	-2951	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr7.36403853.+	chr7	36403853	36403854	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	2929	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr1.9517581.-	chr1	9517581	9517582	-	0	NA	Intergenic	AluJb|SINE|Alu	81947	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr20.61371648.+	chr20	61371648	61371649	+	0	NA	"intron (NM_002531, intron 1 of 3)"	"intron (NM_002531, intron 1 of 3)"	31459	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
chr1.54966385.-	chr1	54966385	54966386	-	0	NA	Intergenic	AluSq|SINE|Alu	47422	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr17.9053908.+	chr17	9053908	9053909	+	0	NA	"intron (NM_004822, intron 2 of 6)"	"intron (NM_004822, intron 2 of 6)"	129049	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr14.74353536.-	chr14	74353536	74353537	-	0	NA	"non-coding (NR_040251, exon 1 of 12)"	"non-coding (NR_040251, exon 1 of 12)"	-218	NR_040251	57862	Hs.270869	NM_001242924	ENSG00000119725	ZNF410	APA-1|APA1	zinc finger protein 410	protein-coding
chr7.810984.-	chr7	810984	810985	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43671	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr19.11068061.-	chr19	11068061	11068062	-	0	NA	Intergenic	AluSp|SINE|Alu	3537	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr2.905810.-	chr2	905810	905811	-	0	NA	Intergenic	Intergenic	40744	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr8.53853062.+	chr8	53853062	53853063	+	0	NA	"exon (NM_005285, exon 1 of 1)"	"exon (NM_005285, exon 1 of 1)"	594	NM_005285	2831	Hs.248117	NM_005285		NPBWR1	GPR7	neuropeptides B/W receptor 1	protein-coding
chr5.25535459.+	chr5	25535459	25535460	+	0	NA	Intergenic	AluY|SINE|Alu	-694767	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr8.30590378.+	chr8	30590378	30590379	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4892	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr15.81273637.+	chr15	81273637	81273638	+	0	NA	"intron (NM_015154, intron 2 of 2)"	AluY|SINE|Alu	8568	NM_015154	23184	Hs.732380	NM_015154	ENSG00000117899	MESDC2	BOCA|MESD	mesoderm development candidate 2	protein-coding
chr1.87994897.-	chr1	87994897	87994898	-	0	NA	Intergenic	LTR12D|LTR|ERV1	157559	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LOC100505768	-	uncharacterized LOC100505768	miscRNA
chr14.32406418.+	chr14	32406418	32406419	+	0	NA	Intergenic	AluYa5|SINE|Alu	139487	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	miscRNA
chr2.80188702.+	chr2	80188702	80188703	+	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	-312217	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr7.936456.+	chr7	936456	936457	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20265	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr12.54085371.+	chr12	54085371	54085372	+	0	NA	Intergenic	AluY|SINE|Alu	-14859	NM_001002031	517	Hs.524464	NM_001002031	ENSG00000135390	ATP5G2	ATP5A	"ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)"	protein-coding
chr7.150812764.-	chr7	150812764	150812765	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28938	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr17.47811810.+	chr17	47811810	47811811	+	0	NA	"intron (NM_030802, intron 1 of 7)"	AluYk4|SINE|Alu	-26528	NM_005827	10237	Hs.154073	NM_005827		SLC35B1	UGTREL1	"solute carrier family 35, member B1"	protein-coding
chr15.91370806.-	chr15	91370806	91370807	-	0	NA	Intergenic	Intergenic	41079	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr2.69337799.-	chr2	69337799	69337800	-	0	NA	"intron (NM_018153, intron 10 of 12)"	AluY|SINE|Alu	-6985	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	miscRNA
chr16.86544672.+	chr16	86544672	86544673	+	0	NA	"exon (NM_001451, exon 1 of 2)"	"exon (NM_001451, exon 1 of 2)"	539	NM_001451	2294	Hs.155591	NM_001451	ENSG00000103241	FOXF1	ACDMPV|FKHL5|FREAC1	forkhead box F1	protein-coding
chr6.5085631.+	chr6	5085631	5085632	+	0	NA	promoter-TSS (NM_001145115)	promoter-TSS (NM_001145115)	-89	NM_001145115	648791	Hs.653089	NM_001145115	ENSG00000219607	PPP1R3G	-	"protein phosphatase 1, regulatory subunit 3G"	protein-coding
chr9.134449922.+	chr9	134449922	134449923	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43260	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr16.723833.+	chr16	723833	723834	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2242	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr12.105375604.-	chr12	105375604	105375605	-	0	NA	Intergenic	AluSx3|SINE|Alu	4494	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr3.128194234.-	chr3	128194234	128194235	-	0	NA	Intergenic	Intergenic	8143	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr6.55775037.-	chr6	55775037	55775038	-	0	NA	Intergenic	SVA_D|Other|Other	34662	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr16.83975007.+	chr16	83975007	83975008	+	0	NA	Intergenic	AluJb|SINE|Alu	-11820	NM_182981	29948	Hs.128055	NM_182981	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
chr1.183670836.+	chr1	183670836	183670837	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48388	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr11.44598163.-	chr11	44598163	44598164	-	0	NA	"intron (NM_001024844, intron 1 of 8)"	MIR3|SINE|MIR	-11022	NM_001024844	3732	Hs.527778	NM_001024844		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
chr2.241780288.+	chr2	241780288	241780289	+	0	NA	Intergenic	Intergenic	-20563	NM_001244008	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr5.694032.+	chr5	694032	694033	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-522	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr19.18416238.-	chr19	18416238	18416239	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17763	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr12.118079840.+	chr12	118079840	118079841	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280233	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr9.140091388.-	chr9	140091388	140091389	-	0	NA	"intron (NM_001128228, intron 1 of 3)"	"intron (NM_001128228, intron 1 of 3)"	-3775	NM_001128228	286262	Hs.323445	NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79|RP11-350O14.7	taperin	protein-coding
chr7.130418554.+	chr7	130418554	130418555	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	334	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr2.241817315.-	chr2	241817315	241817316	-	0	NA	"intron (NM_000030, intron 9 of 10)"	"intron (NM_000030, intron 9 of 10)"	-9153	NM_000030	189	Hs.144567	NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6	alanine-glyoxylate aminotransferase	protein-coding
chr14.23233387.+	chr14	23233387	23233388	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2344	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr19.21734818.-	chr19	21734818	21734819	-	0	NA	Intergenic	SVA_D|Other|Other	-46381	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr11.119091823.-	chr11	119091823	119091824	-	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	-14837	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr16.70133231.+	chr16	70133231	70133232	+	0	NA	Intergenic	AluY|SINE|Alu	-14298	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr4.989220.+	chr4	989220	989221	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-1996	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr12.49856910.+	chr12	49856910	49856911	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	73953	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr1.9517596.-	chr1	9517596	9517597	-	0	NA	Intergenic	AluJb|SINE|Alu	81932	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr5.86907772.-	chr5	86907772	86907773	-	0	NA	Intergenic	AluY|SINE|Alu	198922	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr6.160985708.-	chr6	160985708	160985709	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53552	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chrX.90204209.-	chrX	90204209	90204210	-	0	NA	Intergenic	AluY|SINE|Alu	485388	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr7.155856104.+	chr7	155856104	155856105	+	0	NA	Intergenic	CpG	-251137	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr2.183903191.+	chr2	183903191	183903192	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	38	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr1.40953644.+	chr1	40953644	40953645	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10342	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr17.59482736.-	chr17	59482736	59482737	-	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	-5479	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr22.51001329.-	chr22	51001329	51001330	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	1	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr6.169648547.+	chr6	169648547	169648548	+	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	5590	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr7.99040092.+	chr7	99040092	99040093	+	0	NA	"intron (NM_001081559, intron 1 of 7)"	AluYf4|SINE|Alu	3529	NM_001081559	10898	Hs.489287	NM_001081559	ENSG00000160917	CPSF4	CPSF30|NAR|NEB1	"cleavage and polyadenylation specific factor 4, 30kDa"	protein-coding
chr20.634082.-	chr20	634082	634083	-	0	NA	promoter-TSS (NM_080725)	promoter-TSS (NM_080725)	68	NM_080725	140809	Hs.516830	NM_080725	ENSG00000172070	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
chr6.33811441.-	chr6	33811441	33811442	-	0	NA	Intergenic	LTR33|LTR|ERVL	39648	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr11.2859662.+	chr11	2859662	2859663	+	0	NA	"intron (NR_040711, intron 15 of 15)"	"intron (NR_040711, intron 15 of 15)"	-31601	NR_024627	55539	Hs.127821	NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor (non-protein coding)	miscRNA
chr14.55644279.+	chr14	55644279	55644280	+	0	NA	"intron (NM_001146015, intron 7 of 19)"	AluY|SINE|Alu	14117	NM_001146015	9787	Hs.77695	NM_001146015	ENSG00000126787	DLGAP5	DLG7|HURP	"discs, large (Drosophila) homolog-associated protein 5"	protein-coding
chrX.81762798.+	chrX	81762798	81762799	+	0	NA	Intergenic	AluY|SINE|Alu	-1000471	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr13.111268293.-	chr13	111268293	111268294	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-362	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr1.21829531.+	chr1	21829531	21829532	+	0	NA	Intergenic	SVA_C|Other|Other	-6327	NM_001127501	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr9.4549182.+	chr9	4549182	4549183	+	0	NA	"intron (NM_004170, intron 2 of 11)"	"intron (NM_004170, intron 2 of 11)"	58755	NM_004170	6505	Hs.444915	NM_004170	ENSG00000106688	SLC1A1	EAAC1|EAAT3	"solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1"	protein-coding
chr10.123791079.-	chr10	123791079	123791080	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42390	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr13.21644850.-	chr13	21644850	21644851	-	0	NA	Intergenic	AluSx|SINE|Alu	9128	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr6.24720967.-	chr6	24720967	24720968	-	0	NA	Intergenic	CpG	1564	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr20.47128234.-	chr20	47128234	47128235	-	0	NA	Intergenic	Intergenic	-139580	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr15.100080048.+	chr15	100080048	100080049	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26085	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chrX.53125761.-	chrX	53125761	53125762	-	0	NA	Intergenic	AluJb|SINE|Alu	-14219	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr6.159416871.+	chr6	159416871	159416872	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4327	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr2.905793.-	chr2	905793	905794	-	0	NA	Intergenic	Intergenic	40761	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr12.34492698.-	chr12	34492698	34492699	-	0	NA	Intergenic	GSATII|Satellite|centr	-317482	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chrX.152066765.-	chrX	152066765	152066766	-	0	NA	Intergenic	CpG	16221	NM_001178106	7739	Hs.16622	NM_001178106	ENSG00000147394	ZNF185	-	zinc finger protein 185 (LIM domain)	protein-coding
chr17.7788728.+	chr17	7788728	7788729	+	0	NA	"intron (NM_001005271, intron 1 of 39)"	CpG	605	NM_001005271	1107	Hs.25601	NM_001005271	ENSG00000170004	CHD3	Mi-2a|Mi2-ALPHA|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
chr15.28926647.+	chr15	28926647	28926648	+	0	NA	"intron (NR_036443, intron 12 of 13)"	AluY|SINE|Alu	27059	NR_036443	440248	Hs.732630	NR_036443	ENSG00000206149	HERC2P9	-	hect domain and RLD 2 pseudogene 9	pseudo
chr1.178740162.-	chr1	178740162	178740163	-	0	NA	"intron (NM_152663, intron 1 of 19)"	AluSq|SINE|Alu	-45862	NM_152663	55103	Hs.632485	NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
chr19.48129098.+	chr19	48129098	48129099	+	0	NA	"intron (NM_015711, intron 1 of 14)"	"intron (NM_015711, intron 1 of 14)"	17645	NM_015711	29998	Hs.97244	NM_015711	ENSG00000063169	GLTSCR1	-	glioma tumor suppressor candidate region gene 1	protein-coding
chr10.64708100.-	chr10	64708100	64708101	-	0	NA	Intergenic	SVA_E|Other|Other	129173	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr2.239047561.+	chr2	239047561	239047562	+	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	198	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr9.114393803.+	chr9	114393803	114393804	+	0	NA	"non-coding (NR_037148, exon 1 of 5)"	"non-coding (NR_037148, exon 1 of 5)"	171	NM_004125	552891	Hs.534196	NM_004125	ENSG00000059769	DNAJC25-GNG10	-	DNAJC25-GNG10 readthrough	protein-coding
chr3.170096472.-	chr3	170096472	170096473	-	0	NA	"intron (NM_001145097, intron 1 of 5)"	AluSx1|SINE|Alu	-19061	NM_001248008	6498	Hs.581632	NM_001145097	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like oncogene	protein-coding
chr2.220334238.-	chr2	220334238	220334239	-	0	NA	"intron (NM_005876, intron 13 of 40)"	"intron (NM_005876, intron 13 of 40)"	-8704	NM_001173476	10290	Hs.21639	NM_001173476	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|SPEGalpha|SPEGbeta	SPEG complex locus	protein-coding
chr2.114530057.+	chr2	114530057	114530058	+	0	NA	Intergenic	AluY|SINE|Alu	-15657	NM_025181	80255	Hs.632527	NM_025181		SLC35F5	-	"solute carrier family 35, member F5"	protein-coding
chr20.13271270.+	chr20	13271270	13271271	+	0	NA	"intron (NM_080826, intron 4 of 5)"	AluY|SINE|Alu	-50936	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	miscRNA
chr19.14156282.+	chr19	14156282	14156283	+	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	13689	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr3.8721305.-	chr3	8721305	8721306	-	0	NA	Intergenic	Intergenic	27541	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr6.108315263.-	chr6	108315263	108315264	-	0	NA	Intergenic	AluSz|SINE|Alu	35781	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr14.33668072.+	chr14	33668072	33668073	+	0	NA	"intron (NM_001164749, intron 2 of 11)"	LTR12C|LTR|ERV1	259613	NM_173159	64067	Hs.675475	NM_001164749	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
chr16.3225180.-	chr16	3225180	3225181	-	0	NA	Intergenic	Intergenic	29067	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr9.139119881.+	chr9	139119881	139119882	+	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	17806	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr1.6567685.+	chr1	6567685	6567686	+	0	NA	"intron (NM_198681, intron 1 of 21)"	"intron (NM_198681, intron 1 of 21)"	-10201	NM_001042663	57449	Hs.619982	NM_001042663	ENSG00000171680	PLEKHG5	DSMA4|GEF720|Syx|Tech	"pleckstrin homology domain containing, family G (with RhoGef domain) member 5"	protein-coding
chr6.18371792.-	chr6	18371792	18371793	-	0	NA	Intergenic	AluSx1|SINE|Alu	15789	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
chr1.226350787.+	chr1	226350787	226350788	+	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	23636	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr4.4041355.-	chr4	4041355	4041356	-	0	NA	Intergenic	AluYb9|SINE|Alu	84207	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	"family with sequence similarity 86, member A pseudogene"	pseudo
chr3.31574355.-	chr3	31574355	31574356	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	136	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr18.76189766.+	chr18	76189766	76189767	+	0	NA	Intergenic	CpG	-550509	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr21.47403594.-	chr21	47403594	47403595	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1931	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr16.57323320.+	chr16	57323320	57323321	+	0	NA	Intergenic	AluY|SINE|Alu	-4736	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
chr7.1489751.+	chr7	1489751	1489752	+	0	NA	"intron (NM_182924, intron 2 of 16)"	"intron (NM_182924, intron 2 of 16)"	9358	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr17.77153589.+	chr17	77153589	77153590	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	82570	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr16.68889366.+	chr16	68889366	68889367	+	0	NA	"intron (NM_024562, intron 1 of 17)"	AluSx|SINE|Alu	11857	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
chr2.111367754.+	chr2	111367754	111367755	+	0	NA	Intergenic	Intergenic	-31445	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr7.811046.-	chr7	811046	811047	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43733	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr9.138663200.+	chr9	138663200	138663201	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69169	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr1.109995547.+	chr1	109995547	109995548	+	0	NA	Intergenic	AluY|SINE|Alu	-13553	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr16.77768259.+	chr16	77768259	77768260	+	0	NA	"intron (NM_001243661, intron 2 of 2)"	AluY|SINE|Alu	11870	NM_001243657	283927	Hs.282665	NM_001105663	ENSG00000140876	NUDT7	-	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding
chr11.133788135.+	chr11	133788135	133788136	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16500	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr2.121010404.-	chr2	121010404	121010405	-	0	NA	promoter-TSS (NM_002881)	promoter-TSS (NM_002881)	10	NM_002881	5899	Hs.469820	NM_002881	ENSG00000144118	RALB	-	v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein)	protein-coding
chr20.55247379.+	chr20	55247379	55247380	+	0	NA	Intergenic	AluSz6|SINE|Alu	43021	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr14.101693632.+	chr14	101693632	101693633	+	0	NA	Intergenic	Intergenic	157384	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr1.183259250.-	chr1	183259250	183259251	-	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	-14759	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr1.156527492.-	chr1	156527492	156527493	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14904	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr7.157784577.-	chr7	157784577	157784578	-	0	NA	"intron (NM_130842, intron 10 of 21)"	"intron (NM_130842, intron 10 of 21)"	-137300	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr3.102973945.+	chr3	102973945	102973946	+	0	NA	Intergenic	SVA_D|Other|Other	820086	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr9.6767550.+	chr9	6767550	6767551	+	0	NA	"intron (NM_001146694, intron 1 of 20)"	AluSx1|SINE|Alu	9909	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr19.18253564.-	chr19	18253564	18253565	-	0	NA	"intron (NM_015016, intron 20 of 26)"	AluJb|SINE|Alu	10424	NR_073517	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr11.113283293.-	chr11	113283293	113283294	-	0	NA	"exon (NM_000795, exon 7 of 8)"	"exon (NM_000795, exon 7 of 8)"	-24780	NM_178510	255239	Hs.448473	NM_178510	ENSG00000170209	ANKK1	PKK2	ankyrin repeat and kinase domain containing 1	protein-coding
chr16.243822.-	chr16	243822	243823	-	0	NA	"intron (NM_201412, intron 6 of 9)"	AluY|SINE|Alu	-13489	NM_005331	3049	Hs.247921	NM_005331	ENSG00000086506	HBQ1	-	"hemoglobin, theta 1"	protein-coding
chr12.133328229.+	chr12	133328229	133328230	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10222	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr7.97846357.+	chr7	97846357	97846358	+	0	NA	"3' UTR (NM_015395, exon 26 of 26)"	"3' UTR (NM_015395, exon 26 of 26)"	4791	NM_177455	168620	Hs.674510	NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	"basic helix-loop-helix family, member a15"	protein-coding
chr8.70401929.-	chr8	70401929	70401930	-	0	NA	"intron (NM_001128204, intron 1 of 21)"	AluY|SINE|Alu	3099	NM_001128206	23213	Hs.409602	NM_001128204	ENSG00000137573	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
chr19.2492329.-	chr19	2492329	2492330	-	0	NA	Intergenic	AluSz|SINE|Alu	-16206	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr17.4435094.-	chr17	4435094	4435095	-	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	-23587	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr6.149638284.-	chr6	149638284	149638285	-	0	NA	Intergenic	CpG	1152	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr11.44361805.+	chr11	44361805	44361806	+	0	NA	Intergenic	AluJb|SINE|Alu	-30089	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr12.42877509.-	chr12	42877509	42877510	-	0	NA	promoter-TSS (NM_001144881)	promoter-TSS (NM_001144881)	93	NM_001144881	144165	Hs.720221	NM_001144881	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
chr4.48987999.+	chr4	48987999	48988000	+	0	NA	promoter-TSS (NM_025087)	promoter-TSS (NM_025087)	-266	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr20.31977066.+	chr20	31977066	31977067	+	0	NA	"intron (NM_016082, intron 5 of 13)"	SVA_C|Other|Other	12271	NM_016082	51654	Hs.435952	NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CDK5RAP1.3|CDK5RAP1.4|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
chr3.48533707.+	chr3	48533707	48533708	+	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	7776	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr1.90038741.+	chr1	90038741	90038742	+	0	NA	"intron (NM_001134476, intron 5 of 7)"	AluY|SINE|Alu	14469	NM_015350	23507	Hs.741594	NM_001134476	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	"leucine rich repeat containing 8 family, member B"	protein-coding
chr19.13497354.+	chr19	13497354	13497355	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119920	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr6.42751374.-	chr6	42751374	42751375	-	0	NA	Intergenic	CpG	37420	NM_015349	23506	Hs.658033	NM_015349	ENSG00000112624	GLTSCR1L	KIAA0240	GLTSCR1-like	protein-coding
chr19.58038763.-	chr19	58038763	58038764	-	0	NA	promoter-TSS (NM_001199295)	promoter-TSS (NM_001199295)	-70	NM_153263	256051	Hs.744289	NM_001199295	ENSG00000121406	ZNF549	-	zinc finger protein 549	protein-coding
chr9.141038874.-	chr9	141038874	141038875	-	0	NA	Intergenic	Intergenic	5691	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr14.23706391.-	chr14	23706391	23706392	-	0	NA	Intergenic	AluSz|SINE|Alu	-48918	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr11.119091835.+	chr11	119091835	119091836	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14849	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr7.155246285.+	chr7	155246285	155246286	+	0	NA	Intergenic	Intergenic	-4539	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr22.17719078.+	chr22	17719078	17719079	+	0	NA	Intergenic	AluSg|SINE|Alu	-28299	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr9.115249232.-	chr9	115249232	115249233	-	0	NA	promoter-TSS (NM_133465)	promoter-TSS (NM_133465)	16	NM_133465	158405	Hs.656619	NM_133465	ENSG00000165185	KIAA1958	-	KIAA1958	protein-coding
chr5.178734420.-	chr5	178734420	178734421	-	0	NA	"intron (NM_021599, intron 2 of 10)"	"intron (NM_021599, intron 2 of 10)"	-38011	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr8.14882358.-	chr8	14882358	14882359	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171339	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr16.111794.-	chr16	111794	111795	-	0	NA	"intron (NM_022450, intron 8 of 17)"	CpG-8382	-7965	NM_024571	79622	Hs.15277	NM_024571		SNRNP25	C16orf33	small nuclear ribonucleoprotein 25kDa (U11/U12)	protein-coding
chr22.38204854.-	chr22	38204854	38204855	-	0	NA	"intron (NM_014291, intron 1 of 8)"	AluSz|SINE|Alu	-942	NM_001171690	23464	Hs.54609	NM_001171690	ENSG00000100116	GCAT	KBL	glycine C-acetyltransferase	protein-coding
chr4.186887798.-	chr4	186887798	186887799	-	0	NA	Intergenic	AluSx1|SINE|Alu	9928	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr1.65532981.-	chr1	65532981	65532982	-	0	NA	Intergenic	CpG	8790	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr19.49462850.+	chr19	49462850	49462851	+	0	NA	"intron (NM_138761, intron 4 of 5)"	AluSq2|SINE|Alu	4733	NM_138764	581	Hs.624291	NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2-associated X protein	protein-coding
chr2.240002840.+	chr2	240002840	240002841	+	0	NA	"exon (NM_006037, exon 22 of 27)"	"exon (NM_006037, exon 22 of 27)"	4782	NR_039643	100616493		NR_039643		MIR4441	-	microRNA 4441	miscRNA
chr20.61885486.-	chr20	61885486	61885487	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-156	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr7.5322954.+	chr7	5322954	5322955	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	393	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr13.45945042.+	chr13	45945042	45945043	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29562	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr19.10041252.+	chr19	10041252	10041253	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5818	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr3.37052336.-	chr3	37052336	37052337	-	0	NA	"intron (NM_001258271, intron 6 of 16)"	AluSx|SINE|Alu	-17068	NM_001167618	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	"mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)"	protein-coding
chr1.2260031.-	chr1	2260031	2260032	-	0	NA	"intron (NM_024848, intron 12 of 13)"	"intron (NM_024848, intron 12 of 13)"	-24069	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr9.21968327.-	chr9	21968327	21968328	-	0	NA	TTS (NR_024274)	TTS (NR_024274)	-1189	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr9.6608172.-	chr9	6608172	6608173	-	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	-37520	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr9.7934871.+	chr9	7934871	7934872	+	0	NA	Intergenic	AluY|SINE|Alu	-135072	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr9.138904199.-	chr9	138904199	138904200	-	0	NA	"intron (NM_144653, intron 5 of 5)"	"intron (NM_144653, intron 5 of 5)"	50973	NM_016172	10422	Hs.9194	NM_016172	ENSG00000130560	UBAC1	GBDR1|RP11-432J22.3|UBADC1	UBA domain containing 1	protein-coding
chr7.74447131.+	chr7	74447131	74447132	+	0	NA	Intergenic	AluSx1|SINE|Alu	42568	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr6.138984620.-	chr6	138984620	138984621	-	0	NA	Intergenic	AluSp|SINE|Alu	28185	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr10.129195995.+	chr10	129195995	129195996	+	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	-151618	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr2.4156381.-	chr2	4156381	4156382	-	0	NA	Intergenic	CpG	134759	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr10.4887140.-	chr10	4887140	4887141	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18771	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr21.47838747.+	chr21	47838747	47838748	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40115	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr5.178157709.-	chr5	178157709	178157710	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	6	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr11.64120575.-	chr11	64120575	64120576	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6050	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr16.89034087.-	chr16	89034087	89034088	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9417	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr8.19626757.+	chr8	19626757	19626758	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48161	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr11.631523.+	chr11	631523	631524	+	0	NA	Intergenic	AluSc8|SINE|Alu	-4350	NM_021920	6343	Hs.632324	NM_021920		SCT	-	secretin	protein-coding
chr12.56127542.-	chr12	56127542	56127543	-	0	NA	Intergenic	AluSg|SINE|Alu	4085	NM_001257389	967	Hs.445570	NM_001257389	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
chr20.57225059.-	chr20	57225059	57225060	-	0	NA	Intergenic	CpG	1250	NR_037943	8675	Hs.307913	NM_001001433	ENSG00000124222	STX16	SYN16	syntaxin 16	protein-coding
chrX.89718149.+	chrX	89718149	89718150	+	0	NA	Intergenic	AluY|SINE|Alu	541209	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	"TGFB-induced factor homeobox 2-like, X-linked"	protein-coding
chrX.118871985.-	chrX	118871985	118871986	-	0	NA	Intergenic	AluYc|SINE|Alu	20591	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr1.61508731.+	chr1	61508731	61508732	+	0	NA	Intergenic	CpG	-34215	NM_001145511	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chrX.112187622.-	chrX	112187622	112187623	-	0	NA	Intergenic	AluY|SINE|Alu	103579	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr14.106359702.-	chr14	106359702	106359703	-	0	NA	Intergenic	Intergenic	24136	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr16.58288655.+	chr16	58288655	58288656	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4815	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr2.10804233.+	chr2	10804233	10804234	+	0	NA	"intron (NM_001261392, intron 7 of 19)"	AluSx|SINE|Alu	25880	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr4.38203605.+	chr4	38203605	38203606	+	0	NA	Intergenic	AluSg|SINE|Alu	82030	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr12.8830992.-	chr12	8830992	8830993	-	0	NA	Intergenic	AluSp|SINE|Alu	15559	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr1.54953531.-	chr1	54953531	54953532	-	0	NA	Intergenic	Intergenic	60276	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr17.13504887.-	chr17	13504887	13504888	-	0	NA	"5' UTR (NM_006042, exon 1 of 2)"	"5' UTR (NM_006042, exon 1 of 2)"	-357	NM_006042	9955	Hs.462270	NM_006042	ENSG00000153976	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
chr1.9832317.+	chr1	9832317	9832318	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52233	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr3.46792291.+	chr3	46792291	46792292	+	0	NA	Intergenic	CpG	-6046	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr10.12405360.+	chr10	12405360	12405361	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13777	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr7.2518162.+	chr7	2518162	2518163	+	0	NA	Intergenic	Intergenic	-34001	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr18.67270903.-	chr18	67270903	67270904	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202619	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr2.224724720.-	chr2	224724720	224724721	-	0	NA	Intergenic	AluSp|SINE|Alu	22401	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr19.1508593.-	chr19	1508593	1508594	-	0	NA	"intron (NM_213604, intron 5 of 11)"	"intron (NM_213604, intron 5 of 11)"	-4595	NM_213604	339366	Hs.371674	NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS-like 5	protein-coding
chr13.114446685.+	chr13	114446685	114446686	+	0	NA	Intergenic	Intergenic	7377	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr5.89746542.+	chr5	89746542	89746543	+	0	NA	Intergenic	AluSz|SINE|Alu	24043	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr1.227127393.+	chr1	227127393	227127394	+	0	NA	promoter-TSS (NM_020247)	promoter-TSS (NM_020247)	-545	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	ADCK3	ARCA2|CABC1|COQ10D4|COQ8|SCAR9	aarF domain containing kinase 3	protein-coding
chr3.195545296.-	chr3	195545296	195545297	-	0	NA	Intergenic	MIR3|SINE|MIR	6452	NM_018406	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr3.62860905.+	chr3	62860905	62860906	+	0	NA	"5' UTR (NM_183394, exon 1 of 28)"	"5' UTR (NM_183394, exon 1 of 28)"	159	NM_003716	8618	Hs.654933	NM_003716	ENSG00000163618	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
chr2.131552001.-	chr2	131552001	131552002	-	0	NA	Intergenic	AluY|SINE|Alu	-38137	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr1.145075763.+	chr1	145075763	145075764	+	0	NA	"exon (NM_022359, exon 1 of 7)"	"exon (NM_022359, exon 1 of 7)"	423	NM_022359	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr3.53225179.-	chr3	53225179	53225180	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29956	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr9.133430000.+	chr9	133430000	133430001	+	0	NA	Intergenic	Intergenic	24881	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr11.92637304.+	chr11	92637304	92637305	+	0	NA	Intergenic	AluY|SINE|Alu	-65485	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr10.81107774.+	chr10	81107774	81107775	+	0	NA	"intron (NM_005729, intron 1 of 5)"	CpG	554	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr16.3109378.-	chr16	3109378	3109379	-	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	5935	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr19.46850399.+	chr19	46850399	46850400	+	0	NA	"exon (NM_006247, exon 1 of 13)"	"exon (NM_006247, exon 1 of 13)"	148	NM_001204284	5536	Hs.654604	NM_001204284	ENSG00000011485	PPP5C	PP5|PPP5|PPT	"protein phosphatase 5, catalytic subunit"	protein-coding
chr10.133869242.+	chr10	133869242	133869243	+	0	NA	Intergenic	Intergenic	-49071	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr4.40571757.-	chr4	40571757	40571758	-	0	NA	"intron (NM_001098634, intron 1 of 6)"	AluSz|SINE|Alu	53767	NM_019027	54502	Hs.518727	NM_001098634	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
chr7.53103648.-	chr7	53103648	53103649	-	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	-299	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr17.18785211.-	chr17	18785211	18785212	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16429	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr19.53233412.+	chr19	53233412	53233413	+	0	NA	promoter-TSS (NM_030972)	promoter-TSS (NM_030972)	-277	NM_030972	81856	Hs.143951	NM_001161499	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
chr16.87903511.+	chr16	87903511	87903512	+	0	NA	promoter-TSS (NM_003486)	promoter-TSS (NM_003486)	-411	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr19.17585845.-	chr19	17585845	17585846	-	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	-4545	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chrX.90204117.+	chrX	90204117	90204118	+	0	NA	Intergenic	AluY|SINE|Alu	-485480	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr19.46443831.+	chr19	46443831	46443832	+	0	NA	"exon (NM_002516, exon 4 of 4)"	"exon (NM_002516, exon 4 of 4)"	-25795	NM_001029861	339345	Hs.434218	NM_001029861	ENSG00000188425	NANOS2	NOS2	nanos homolog 2 (Drosophila)	protein-coding
chr2.116681995.+	chr2	116681995	116681996	+	0	NA	Intergenic	AluSx|SINE|Alu	762311	NM_001004360	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr8.117309707.+	chr8	117309707	117309708	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27590	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr16.16013169.-	chr16	16013169	16013170	-	0	NA	Intergenic	AluY|SINE|Alu	30265	NM_004996	4363	Hs.391464	NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	"ATP-binding cassette, sub-family C (CFTR/MRP), member 1"	protein-coding
chr12.132353183.+	chr12	132353183	132353184	+	0	NA	Intergenic	Intergenic	-26096	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr5.178657979.+	chr5	178657979	178657980	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114452	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr2.238536274.-	chr2	238536274	238536275	-	0	NA	promoter-TSS (NM_001137550)	promoter-TSS (NM_001137550)	-50	NM_001137550	9208	Hs.471779	NM_001137550	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
chr19.1809843.-	chr19	1809843	1809844	-	0	NA	"intron (NR_047593, intron 3 of 28)"	"intron (NR_047593, intron 3 of 28)"	-2393	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr2.32100882.-	chr2	32100882	32100883	-	0	NA	"intron (NM_015955, intron 7 of 8)"	AluSz|SINE|Alu	-134816	NM_015955	51072	Hs.444969	NM_001137602	ENSG00000162959	MEMO1	C2orf4|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
chr17.80242460.+	chr17	80242460	80242461	+	0	NA	Intergenic	AluSx|SINE|Alu	-10866	NM_001893	1453	Hs.631725	NM_001893	ENSG00000141551	CSNK1D	CKIdelta|HCKID	"casein kinase 1, delta"	protein-coding
chr19.41868012.-	chr19	41868012	41868013	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1859	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr11.66676642.+	chr11	66676642	66676643	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1302	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr10.35327293.-	chr10	35327293	35327294	-	0	NA	"intron (NM_001198778, intron 9 of 20)"	AluSx3|SINE|Alu	-35965	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr16.1182505.+	chr16	1182505	1182506	+	0	NA	Intergenic	Intergenic	-20736	NM_021098	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr16.73461739.-	chr16	73461739	73461740	-	0	NA	Intergenic	AluSg|SINE|Alu	-41035	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr15.89714212.-	chr15	89714212	89714213	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50710	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr2.101245792.+	chr2	101245792	101245793	+	0	NA	Intergenic	Intergenic	66374	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.240371812.+	chr2	240371812	240371813	+	0	NA	Intergenic	SVA_D|Other|Other	-49169	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr9.135013588.+	chr9	135013588	135013589	+	0	NA	Intergenic	AluSz|SINE|Alu	-23746	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr9.131639067.+	chr9	131639067	131639068	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5287	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr22.31033045.+	chr22	31033045	31033046	+	0	NA	"exon (NM_001001479, exon 1 of 2)"	"exon (NM_001001479, exon 1 of 2)"	1252	NM_001001479	339665	Hs.660384	NM_001001479	ENSG00000100036	SLC35E4	-	"solute carrier family 35, member E4"	protein-coding
chr16.85512919.-	chr16	85512919	85512920	-	0	NA	Intergenic	AluY|SINE|Alu	132110	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr3.61069027.-	chr3	61069027	61069028	-	0	NA	"intron (NM_001166243, intron 2 of 9)"	AluYf4|SINE|Alu	-168106	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr1.65210526.-	chr1	65210526	65210527	-	0	NA	promoter-TSS (NM_018211)	promoter-TSS (NM_018211)	252	NM_018211	55225	Hs.591443	NM_018716	ENSG00000162437	RAVER2	-	"ribonucleoprotein, PTB-binding 2"	protein-coding
chr8.21944472.-	chr8	21944472	21944473	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2242	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chr16.68133359.-	chr16	68133359	68133360	-	0	NA	"intron (NM_004555, intron 1 of 10)"	AluSx1|SINE|Alu	-14090	NM_004555	4775	Hs.436585	NM_004555	ENSG00000072736	NFATC3	NFAT4|NFATX	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3"	protein-coding
chr9.138959035.+	chr9	138959035	138959036	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28096	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr4.77348138.-	chr4	77348138	77348139	-	0	NA	Intergenic	AluY|SINE|Alu	8115	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr5.177538266.-	chr5	177538266	177538267	-	0	NA	Intergenic	AluSp|SINE|Alu	2290	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr1.102295594.-	chr1	102295594	102295595	-	0	NA	"intron (NM_058170, intron 3 of 5)"	AluY|SINE|Alu	41973	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	"DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5"	pseudo
chr21.43198271.-	chr21	43198271	43198272	-	0	NA	Intergenic	Intergenic	11022	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr9.6858654.+	chr9	6858654	6858655	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101013	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr20.62204087.-	chr20	62204087	62204088	-	0	NA	"5' UTR (NM_001037335, exon 2 of 20)"	"5' UTR (NM_001037335, exon 2 of 20)"	-1505	NM_001037335	85441	Hs.517180	NM_001037335	ENSG00000130589	HELZ2	PDIP-1|PRIC285	"helicase with zinc finger 2, transcriptional coactivator"	protein-coding
chr2.85691633.+	chr2	85691633	85691634	+	0	NA	Intergenic	AluSg7|SINE|Alu	29715	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chr11.66997282.+	chr11	66997282	66997283	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10224	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr2.55647025.+	chr2	55647025	55647026	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	32	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr19.2288179.-	chr19	2288179	2288180	-	0	NA	Intergenic	L3|LINE|CR1	5998	NM_198532	374872	Hs.511803	NM_198532	ENSG00000188305	C19orf35	-	chromosome 19 open reading frame 35	protein-coding
chr11.17160914.-	chr11	17160914	17160915	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30440	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr2.241780258.+	chr2	241780258	241780259	+	0	NA	Intergenic	Intergenic	-20533	NM_001244008	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr16.12210396.-	chr16	12210396	12210397	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139794	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr1.101426801.+	chr1	101426801	101426802	+	0	NA	"intron (NM_133496, intron 8 of 10)"	AluY|SINE|Alu	64561	NM_015958	51611	Hs.440776	NM_001077394		DPH5	CGI-30|HSPC143|NPD015	DPH5 homolog (S. cerevisiae)	protein-coding
chr6.24720972.+	chr6	24720972	24720973	+	0	NA	Intergenic	CpG	-1569	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr1.54775690.-	chr1	54775690	54775691	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96289	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr10.133869277.+	chr10	133869277	133869278	+	0	NA	Intergenic	Intergenic	-49036	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr10.13312280.+	chr10	13312280	13312281	+	0	NA	Intergenic	AluSx1|SINE|Alu	29466	NM_001037537	5264	Hs.498732	NM_001037537	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
chr2.86948256.-	chr2	86948256	86948257	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	11	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr6.165205808.+	chr6	165205808	165205809	+	0	NA	Intergenic	AluYb8|SINE|Alu	517303	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr22.24237311.-	chr22	24237311	24237312	-	0	NA	TTS (NM_002415)	TTS (NM_002415)	-746	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr20.55204199.-	chr20	55204199	55204200	-	0	NA	promoter-TSS (NM_003222)	promoter-TSS (NM_003222)	159	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr8.14882324.+	chr8	14882324	14882325	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171305	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr19.45678467.-	chr19	45678467	45678468	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3034	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr17.72203136.-	chr17	72203136	72203137	-	0	NA	"intron (NM_001035258, intron 3 of 4)"	AluY|SINE|Alu	-3341	NM_001035258	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr3.95669591.+	chr3	95669591	95669592	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267554	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr16.632105.+	chr16	632105	632106	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7252	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr20.13660605.+	chr20	13660605	13660606	+	0	NA	Intergenic	AluY|SINE|Alu	-41022	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr8.43403641.-	chr8	43403641	43403642	-	0	NA	Intergenic	GSATX|Satellite|centr	-256056	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr6.127845933.-	chr6	127845933	127845934	-	0	NA	Intergenic	AluY|SINE|Alu	5433	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr5.176292823.-	chr5	176292823	176292824	-	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	-33510	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr2.241541353.+	chr2	241541353	241541354	+	0	NA	Intergenic	Intergenic	-3472	NM_001195382	2859	Hs.112218	NM_001195381	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
chr1.23931909.+	chr1	23931909	23931910	+	0	NA	Intergenic	AluSx|SINE|Alu	-21915	NR_027042	259283	Hs.523369	NR_027042	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	miscRNA
chr21.46383157.+	chr21	46383157	46383158	+	0	NA	"intron (NM_058190, intron 3 of 5)"	AluY|SINE|Alu	23202	NM_058190	85395	Hs.410830	NM_058190	ENSG00000160256	FAM207A	C21orf70	"family with sequence similarity 207, member A"	protein-coding
chr18.33709937.+	chr18	33709937	33709938	+	0	NA	promoter-TSS (NM_001242877)	promoter-TSS (NM_001242877)	100	NR_040110	55250	Hs.8739	NM_001242875	ENSG00000134759	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
chr16.11953966.+	chr16	11953966	11953967	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8524	NM_015659	26156	Hs.401842	NM_015659	ENSG00000171490	RSL1D1	CSIG|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
chr21.34914911.-	chr21	34914911	34914912	-	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	-284	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr9.125675577.-	chr9	125675577	125675578	-	0	NA	promoter-TSS (NM_006626)	promoter-TSS (NM_006626)	-30	NM_006626	10773	Hs.654596	NM_006626	ENSG00000186130	ZBTB6	ZID|ZNF482	zinc finger and BTB domain containing 6	protein-coding
chr19.3219061.-	chr19	3219061	3219062	-	0	NA	Intergenic	AluY|SINE|Alu	5640	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr1.183257543.+	chr1	183257543	183257544	+	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	16466	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr2.45870928.-	chr2	45870928	45870929	-	0	NA	Intergenic	CpG	8115	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	"protein kinase C, epsilon"	protein-coding
chr13.112726519.-	chr13	112726519	112726520	-	0	NA	TTS (NM_005986)	TTS (NM_005986)	-4606	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr16.74363453.-	chr16	74363453	74363454	-	0	NA	Intergenic	Intergenic	-32780	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 7"	protein-coding
chr8.98771792.-	chr8	98771792	98771793	-	0	NA	Intergenic	AluSq10|SINE|Alu	16017	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr13.66584767.-	chr13	66584767	66584768	-	0	NA	Intergenic	AluY|SINE|Alu	814534	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr5.2860471.-	chr5	2860471	2860472	-	0	NA	Intergenic	Intergenic	-108209	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr7.155246415.-	chr7	155246415	155246416	-	0	NA	Intergenic	CpG	4409	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr1.229761508.+	chr1	229761508	229761509	+	0	NA	promoter-TSS (NM_014777)	promoter-TSS (NM_014777)	286	NM_001025247	27097	Hs.270621	NM_001025247	ENSG00000135801	TAF5L	PAF65B	"TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa"	protein-coding
chr7.152569796.-	chr7	152569796	152569797	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-112962	NR_073000	57180	Hs.647117	NM_001040135	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
chr5.79863369.-	chr5	79863369	79863370	-	0	NA	"intron (NM_001004441, intron 2 of 4)"	AluSq|SINE|Alu	-2935	NM_001004441	340120	Hs.519404	NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
chr3.128161151.-	chr3	128161151	128161152	-	0	NA	Intergenic	Intergenic	21286	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr12.127898761.-	chr12	127898761	127898762	-	0	NA	Intergenic	Intergenic	467401	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr1.2498980.+	chr1	2498980	2498981	+	0	NA	Intergenic	Intergenic	-10530	NR_037844	100133445	Hs.602652	NR_037844		LOC100133445	-	uncharacterized LOC100133445	miscRNA
chr9.90728953.+	chr9	90728953	90728954	+	0	NA	Intergenic	REP522|Satellite|telo	20947	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	"SPATA31 subfamily C, member 2"	protein-coding
chr12.75694206.+	chr12	75694206	75694207	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29630	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chrX.25544597.+	chrX	25544597	25544598	+	0	NA	Intergenic	AluSc5|SINE|Alu	-510532	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
chr2.70416485.-	chr2	70416485	70416486	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1666	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr5.94261315.+	chr5	94261315	94261316	+	0	NA	"intron (NM_001002796, intron 6 of 22)"	AluY|SINE|Alu	156230	NM_001002796	79772	Hs.655087	NM_001002796	ENSG00000175471	MCTP1	-	"multiple C2 domains, transmembrane 1"	protein-coding
chr5.3764228.+	chr5	3764228	3764229	+	0	NA	Intergenic	Intergenic	168060	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr14.55349948.+	chr14	55349948	55349949	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-5037	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr20.57575056.+	chr20	57575056	57575057	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7253	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr3.102973883.-	chr3	102973883	102973884	-	0	NA	Intergenic	SVA_D|Other|Other	-820024	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chrX.53125770.+	chrX	53125770	53125771	+	0	NA	Intergenic	AluJb|SINE|Alu	14228	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.97168911.+	chr2	97168911	97168912	+	0	NA	"intron (NR_026875, intron 1 of 3)"	"intron (NR_026875, intron 1 of 3)"	4935	NR_026875	93082	Hs.149219	NR_026875	ENSG00000163121	NEURL3	LINCR	neuralized homolog 3 (Drosophila) pseudogene	pseudo
chr5.37295971.-	chr5	37295971	37295972	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46441	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr5.2007695.+	chr5	2007695	2007696	+	0	NA	Intergenic	CpG	-124815	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr20.60791192.+	chr20	60791192	60791193	+	0	NA	"exon (NM_007232, exon 3 of 3)"	"exon (NM_007232, exon 3 of 3)"	4131	NM_007232	11255	Hs.251399	NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
chr2.239047358.+	chr2	239047358	239047359	+	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-5	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr16.89331767.-	chr16	89331767	89331768	-	0	NA	Intergenic	Intergenic	-47656	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chr5.175679285.-	chr5	175679285	175679286	-	0	NA	"intron (NM_198567, intron 1 of 8)"	SVA_D|Other|Other	-13915	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr1.150978979.+	chr1	150978979	150978980	+	0	NA	"5' UTR (NM_001163260, exon 1 of 10)"	"5' UTR (NM_001163260, exon 1 of 10)"	294	NM_001163260	55793	Hs.743952	NM_001040217	ENSG00000143409	FAM63A	RP11-316M1.5	"family with sequence similarity 63, member A"	protein-coding
chr11.16894184.+	chr11	16894184	16894185	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	134036	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr14.77743579.+	chr14	77743579	77743580	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5924	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr8.21944483.-	chr8	21944483	21944484	-	0	NA	Intergenic	LTR12C|LTR|ERV1	2231	NM_022749	64760	Hs.491223	NM_022749	ENSG00000158863	FAM160B2	RAI16	"family with sequence similarity 160, member B2"	protein-coding
chr6.33500238.+	chr6	33500238	33500239	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47832	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chrX.11749464.-	chrX	11749464	11749465	-	0	NA	Intergenic	AluSx|SINE|Alu	26814	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chrX.53111625.+	chrX	53111625	53111626	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	83	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr3.129048090.+	chr3	129048090	129048091	+	0	NA	Intergenic	AluY|SINE|Alu	-12970	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr2.101245841.+	chr2	101245841	101245842	+	0	NA	Intergenic	Intergenic	66423	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr16.3203794.+	chr16	3203794	3203795	+	0	NA	Intergenic	AluSg|SINE|Alu	18660	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr12.132116828.-	chr12	132116828	132116829	-	0	NA	Intergenic	L1ME1|LINE|L1	78804	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr2.110631860.+	chr2	110631860	110631861	+	0	NA	Intergenic	AluY|SINE|Alu	-24149	NR_027467	96626	Hs.535619	NM_033514	ENSG00000256977	LIMS3	PINCH-3	LIM and senescent cell antigen-like domains 3	protein-coding
chr20.43342084.-	chr20	43342084	43342085	-	0	NA	Intergenic	AluSx|SINE|Alu	1801	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr8.145159319.-	chr8	145159319	145159320	-	0	NA	promoter-TSS (NR_038270)	promoter-TSS (NR_038270)	-14	NM_032272	84232	Hs.19673	NM_032272	ENSG00000179632	MAF1	-	MAF1 homolog (S. cerevisiae)	protein-coding
chr8.57359105.-	chr8	57359105	57359106	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-177	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr16.4537736.-	chr16	4537736	4537737	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8123	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr8.101594957.+	chr8	101594957	101594958	+	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	-22943	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chr4.42658257.+	chr4	42658257	42658258	+	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	865	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr16.87360643.-	chr16	87360643	87360644	-	0	NA	Intergenic	Intergenic	9617	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr18.55445747.+	chr18	55445747	55445748	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24580	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr10.74059519.+	chr10	74059519	74059520	+	0	NA	Intergenic	AluSz6|SINE|Alu	25842	NM_019058	54541	Hs.523012	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
chr6.18371758.-	chr6	18371758	18371759	-	0	NA	Intergenic	AluSx1|SINE|Alu	15823	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
chr9.36596641.-	chr9	36596641	36596642	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23782	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr18.41408413.-	chr18	41408413	41408414	-	0	NA	Intergenic	AluSx3|SINE|Alu	550798	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr1.89358759.+	chr1	89358759	89358760	+	0	NA	Intergenic	AluY|SINE|Alu	-1458	NM_001514	2959	Hs.481852	NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
chr7.5356002.-	chr7	5356002	5356003	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33441	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr16.631890.-	chr16	631890	631891	-	0	NA	"intron (NM_148920, intron 9 of 9)"	AluSq2|SINE|Alu	7467	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr6.41341094.-	chr6	41341094	41341095	-	0	NA	Intergenic	CpG	-37566	NM_001199510	9436	Hs.194721	NM_001199509	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
chr12.56394846.-	chr12	56394846	56394847	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3803	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr9.133430093.+	chr9	133430093	133430094	+	0	NA	Intergenic	Intergenic	24788	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr17.710505.-	chr17	710505	710506	-	0	NA	"intron (NM_022463, intron 5 of 7)"	"intron (NM_022463, intron 5 of 7)"	24934	NM_016080	51031	Hs.595572	NM_016080	ENSG00000167699	GLOD4	C17orf25|HC71	glyoxalase domain containing 4	protein-coding
chr9.135116330.-	chr9	135116330	135116331	-	0	NA	"exon (NM_032536, exon 7 of 8)"	"exon (NM_032536, exon 7 of 8)"	-78996	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr14.102983057.-	chr14	102983057	102983058	-	0	NA	Intergenic	CpG	6929	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr3.172180232.-	chr3	172180232	172180233	-	0	NA	Intergenic	AluY|SINE|Alu	13986	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr4.188342096.-	chr4	188342096	188342097	-	0	NA	"intron (NR_038931, intron 1 of 4)"	AluYb8|SINE|Alu	-84671	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr19.53979647.-	chr19	53979647	53979648	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8658	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr12.31575311.-	chr12	31575311	31575312	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96152	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr3.36494796.-	chr3	36494796	36494797	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72699	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr12.49018608.-	chr12	49018608	49018609	-	0	NA	Intergenic	AluSc8|SINE|Alu	-29693	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr10.44881063.-	chr10	44881063	44881064	-	0	NA	promoter-TSS (NM_000609)	promoter-TSS (NM_000609)	518	NM_001033886	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr19.51296705.-	chr19	51296705	51296706	-	0	NA	"intron (NM_033068, intron 6 of 10)"	AluSx|SINE|Alu	-3033	NM_033068	93650	Hs.293394	NM_033068	ENSG00000142513	ACPT	-	"acid phosphatase, testicular"	protein-coding
chr17.65843613.-	chr17	65843613	65843614	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21833	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chrY.499450.-	chrY	499450	499451	-	0	NA	Intergenic	AluY|SINE|Alu	35629	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr1.197754718.-	chr1	197754718	197754719	-	0	NA	Intergenic	AluY|SINE|Alu	10095	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr20.33136234.+	chr20	33136234	33136235	+	0	NA	"intron (NM_181509, intron 1 of 4)"	"intron (NM_181509, intron 1 of 4)"	1546	NM_181509	84557	Hs.632273	NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule-associated protein 1 light chain 3 alpha	protein-coding
chr20.37678921.+	chr20	37678921	37678922	+	0	NA	Intergenic	CpG	87940	NM_021931	60625	Hs.444520	NM_001190809	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding
chr4.166248599.-	chr4	166248599	166248600	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	219	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr10.131771339.-	chr10	131771339	131771340	-	0	NA	Intergenic	CpG-3433	9248	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr1.46326324.-	chr1	46326324	46326325	-	0	NA	"intron (NM_015112, intron 3 of 28)"	AluSq2|SINE|Alu	-57039	NM_015112	23139	Hs.319481	NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
chr5.31018967.-	chr5	31018967	31018968	-	0	NA	Intergenic	AluY|SINE|Alu	174795	NM_004932	1004	Hs.171054	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	"cadherin 6, type 2, K-cadherin (fetal kidney)"	protein-coding
chr10.8097869.-	chr10	8097869	8097870	-	0	NA	"intron (NM_001002295, intron 2 of 5)"	CpG-2567	-1202	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr10.132873729.+	chr10	132873729	132873730	+	0	NA	Intergenic	CpG	-112798	NR_036180	100422867		NR_036180	ENSG00000264803	MIR378C	-	microRNA 378c	miscRNA
chr3.98624710.+	chr3	98624710	98624711	+	0	NA	Intergenic	AluY|SINE|Alu	-4177	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr5.178287388.-	chr5	178287388	178287389	-	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	-434	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr12.49018607.-	chr12	49018607	49018608	-	0	NA	Intergenic	AluSc8|SINE|Alu	-29694	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr21.46824682.+	chr21	46824682	46824683	+	0	NA	promoter-TSS (NM_130445)	promoter-TSS (NM_130445)	-415	NM_130445	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chrX.68525650.+	chrX	68525650	68525651	+	0	NA	Intergenic	CpG	-140285	NM_022368	64219	Hs.522679	NM_001032396	ENSG00000181191	PJA1	PRAJA1|RNF70	"praja ring finger 1, E3 ubiquitin protein ligase"	protein-coding
chr12.96314657.-	chr12	96314657	96314658	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21771	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr19.40696440.-	chr19	40696440	40696441	-	0	NA	Intergenic	AluSx|SINE|Alu	1211	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr12.56394843.-	chr12	56394843	56394844	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3800	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr13.114257641.+	chr13	114257641	114257642	+	0	NA	"intron (NM_007111, intron 2 of 11)"	"intron (NM_007111, intron 2 of 11)"	18585	NM_007111	7027	Hs.79353	NM_007111	ENSG00000198176	TFDP1	DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
chr11.134275129.-	chr11	134275129	134275130	-	0	NA	"intron (NM_054025, intron 1 of 5)"	"intron (NM_054025, intron 1 of 5)"	-6683	NM_054025	27087	Hs.381050	NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	"beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)"	protein-coding
chr4.1358113.-	chr4	1358113	1358114	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17009	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr2.202045970.-	chr2	202045970	202045971	-	0	NA	Intergenic	Intergenic	1651	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr16.22675490.-	chr16	22675490	22675491	-	0	NA	Intergenic	AluJr|SINE|Alu	54113	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr2.202046020.-	chr2	202046020	202046021	-	0	NA	Intergenic	AluSz|SINE|Alu	1601	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chrM.129.+	chrM	129	130	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.226350778.+	chr1	226350778	226350779	+	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	23645	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr21.31598706.-	chr21	31598706	31598707	-	0	NA	Intergenic	AluSx4|SINE|Alu	10237	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr1.79749330.+	chr1	79749330	79749331	+	0	NA	Intergenic	AluSx|SINE|Alu	-276835	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr6.122006951.-	chr6	122006951	122006952	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-250206	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr20.42045821.-	chr20	42045821	42045822	-	0	NA	Intergenic	L1M2c|LINE|L1	40683	NM_006275	6431	Hs.743979	NM_006275	ENSG00000124193	SRSF6	B52|SFRS6|SRP55	serine/arginine-rich splicing factor 6	protein-coding
chr19.47883026.+	chr19	47883026	47883027	+	0	NA	"exon (NM_014681, exon 14 of 17)"	"exon (NM_014681, exon 14 of 17)"	30488	NM_014681	9704	Hs.151706	NM_014681	ENSG00000134815	DHX34	DDX34|HRH1	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding
chr10.6985589.+	chr10	6985589	6985590	+	0	NA	Intergenic	AluSx1|SINE|Alu	164029	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr9.88491266.-	chr9	88491266	88491267	-	0	NA	Intergenic	AluYc|SINE|Alu	64791	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr4.72877008.-	chr4	72877008	72877009	-	0	NA	Intergenic	AluY|SINE|Alu	20513	NM_004885	10886	Hs.99231	NM_001144756	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
chr16.89707657.+	chr16	89707657	89707658	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-16495	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr5.121647954.-	chr5	121647954	121647955	-	0	NA	"5' UTR (NM_005460, exon 1 of 11)"	"5' UTR (NM_005460, exon 1 of 11)"	-134	NM_001242935	9627	Hs.426463	NM_001242935	ENSG00000064692	SNCAIP	SYPH1|Sph1	"synuclein, alpha interacting protein"	protein-coding
chr7.74447100.+	chr7	74447100	74447101	+	0	NA	Intergenic	AluSx1|SINE|Alu	42599	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr11.92637239.-	chr11	92637239	92637240	-	0	NA	Intergenic	AluY|SINE|Alu	65550	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr6.160985714.-	chr6	160985714	160985715	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53558	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr17.18179001.-	chr17	18179001	18179002	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14577	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr2.241622506.-	chr2	241622506	241622507	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	189	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr1.937266.+	chr1	937266	937267	+	0	NA	Intergenic	CpG-24	-1714	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr22.49593758.+	chr22	49593758	49593759	+	0	NA	Intergenic	Intergenic	331176	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr12.118079855.+	chr12	118079855	118079856	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280248	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr18.45968028.-	chr18	45968028	45968029	-	0	NA	Intergenic	Intergenic	97399	NM_014772	9811	Hs.145230	NM_001142397	ENSG00000134030	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
chr19.1010973.+	chr19	1010973	1010974	+	0	NA	"intron (NM_033420, intron 9 of 9)"	CpG-12171	10168	NM_001033026	91304	Hs.515003	NM_001033026	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
chr7.66137167.-	chr7	66137167	66137168	-	0	NA	Intergenic	AluY|SINE|Alu	-43299	NM_001167961	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr6.108315387.+	chr6	108315387	108315388	+	0	NA	Intergenic	AluSz|SINE|Alu	-35905	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr5.72921559.-	chr5	72921559	72921560	-	0	NA	promoter-TSS (NM_001080479)	promoter-TSS (NM_001080479)	424	NM_001177693	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
chr10.135228040.+	chr10	135228040	135228041	+	0	NA	"intron (NM_138384, intron 9 of 10)"	SVA_D|Other|Other	10081	NM_001012508	503542	Hs.64968	NM_001012508	ENSG00000203772	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein homolog (zebrafish)	protein-coding
chr17.40576554.-	chr17	40576554	40576555	-	0	NA	Intergenic	AluSx|SINE|Alu	1216	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
chr11.45810280.+	chr11	45810280	45810281	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15343	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr17.27126578.-	chr17	27126578	27126579	-	0	NA	"intron (NM_001077498, intron 1 of 2)"	AluSc8|SINE|Alu	-43263	NM_001077498	55731	Hs.564533	NM_001077498	ENSG00000173065	FAM222B	C17orf63	"family with sequence similarity 222, member B"	protein-coding
chrX.29584318.-	chrX	29584318	29584319	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649357	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr18.42260306.-	chr18	42260306	42260307	-	0	NA	promoter-TSS (NM_015559)	promoter-TSS (NM_015559)	-168	NM_001130110	26040	Hs.435458	NM_001130110	ENSG00000152217	SETBP1	SEB	SET binding protein 1	protein-coding
chr14.105618927.-	chr14	105618927	105618928	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16234	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr6.126111970.+	chr6	126111970	126111971	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	61	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr17.25676752.+	chr17	25676752	25676753	+	0	NA	Intergenic	MER52D|LTR|ERV1	55646	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr1.12040338.-	chr1	12040338	12040339	-	0	NA	promoter-TSS (NM_014874)	promoter-TSS (NM_014874)	-100	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr11.67346419.-	chr11	67346419	67346420	-	0	NA	Intergenic	AluY|SINE|Alu	4647	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr17.27717837.+	chr17	27717837	27717838	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-106	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr14.105242476.+	chr14	105242476	105242477	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17462	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr7.6454055.+	chr7	6454055	6454056	+	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	33588	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr2.202767448.+	chr2	202767448	202767449	+	0	NA	Intergenic	AluY|SINE|Alu	96146	NM_001261436	65061	Hs.348711	NM_001261435	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin-dependent kinase 15	protein-coding
chr12.8830948.-	chr12	8830948	8830949	-	0	NA	Intergenic	AluSp|SINE|Alu	15515	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr9.100993086.-	chr9	100993086	100993087	-	0	NA	"intron (NR_051978, intron 3 of 11)"	AluSz|SINE|Alu	17253	NM_001267572	55357	Hs.371016	NM_001267571	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	"TBC1 domain family, member 2"	protein-coding
chrX.152916357.-	chrX	152916357	152916358	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8460	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr17.40464879.+	chr17	40464879	40464880	+	0	NA	TTS (NM_213662)	TTS (NM_213662)	25314	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr5.100110681.-	chr5	100110681	100110682	-	0	NA	Intergenic	LTR13|LTR|ERVK	-128289	NM_175052	7903	Hs.308628	NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4"	protein-coding
chr5.18111558.-	chr5	18111558	18111559	-	0	NA	Intergenic	AluY|SINE|Alu	724139	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr8.41166036.+	chr8	41166036	41166037	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	954	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr17.67192576.+	chr17	67192576	67192577	+	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	48380	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chr18.33543826.-	chr18	33543826	33543827	-	0	NA	Intergenic	AluY|SINE|Alu	8762	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr21.32687771.+	chr21	32687771	32687772	+	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	243519	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chrX.54269579.-	chrX	54269579	54269580	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59865	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr16.87022599.+	chr16	87022599	87022600	+	0	NA	Intergenic	Intergenic	328427	NM_001256917	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr2.113642122.-	chr2	113642122	113642123	-	0	NA	Intergenic	AluJb|SINE|Alu	28426	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr11.41260587.+	chr11	41260587	41260588	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220599	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr17.20420661.+	chr17	20420661	20420662	+	0	NA	Intergenic	Intergenic	-12850	NR_029393	644945	Hs.572477	NR_029393	ENSG00000214822	KRT16P3	-	keratin 16 pseudogene 3	pseudo
chr10.26961170.+	chr10	26961170	26961171	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25425	NM_014317	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1	"prenyl (decaprenyl) diphosphate synthase, subunit 1"	protein-coding
chr3.164852019.+	chr3	164852019	164852020	+	0	NA	Intergenic	AluY|SINE|Alu	-55736	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr5.145590327.+	chr5	145590327	145590328	+	0	NA	"intron (NM_018989, intron 1 of 20)"	AluY|SINE|Alu	7164	NM_018989	54439	Hs.61441	NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18	RNA binding motif protein 27	protein-coding
chr3.124468897.+	chr3	124468897	124468898	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19684	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr21.44283041.+	chr21	44283041	44283042	+	0	NA	"intron (NM_001260474, intron 4 of 10)"	"intron (NM_001260474, intron 4 of 10)"	16344	NM_001260477	10785	Hs.711744	NM_001260474	ENSG00000160193	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
chr17.18178973.+	chr17	18178973	18178974	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14549	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr1.94375300.-	chr1	94375300	94375301	-	0	NA	promoter-TSS (NM_002061)	promoter-TSS (NM_002061)	288	NM_002061	2730	Hs.315562	NM_002061		GCLM	GLCLR	"glutamate-cysteine ligase, modifier subunit"	protein-coding
chr16.1845114.+	chr16	1845114	1845115	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-205	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr16.57898547.-	chr16	57898547	57898548	-	0	NA	Intergenic	AluSg|SINE|Alu	62108	NM_005550	3801	Hs.23131	NM_001130099	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
chr5.10564490.-	chr5	10564490	10564491	-	0	NA	promoter-TSS (NM_001164440)	promoter-TSS (NM_001164440)	-55	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chr6.126111928.+	chr6	126111928	126111929	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	19	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr8.101595036.+	chr8	101595036	101595037	+	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	-23022	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chr12.8830931.-	chr12	8830931	8830932	-	0	NA	Intergenic	AluSp|SINE|Alu	15498	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr13.21894216.-	chr13	21894216	21894217	-	0	NA	"intron (NR_046461, intron 2 of 4)"	CpG	-21952	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr2.54950922.-	chr2	54950922	54950923	-	0	NA	Intergenic	CpG	1227	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
chr17.47297820.-	chr17	47297820	47297821	-	0	NA	"intron (NM_016428, intron 6 of 7)"	"intron (NM_016428, intron 6 of 7)"	9884	NM_001198754	2793	Hs.181781	NM_001198754	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8	"guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2"	protein-coding
chr2.61306976.+	chr2	61306976	61306977	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13613	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr7.151348431.+	chr7	151348431	151348432	+	0	NA	"intron (NM_001040633, intron 4 of 15)"	AluSz|SINE|Alu	-19087	NM_024429	51422	Hs.647072	NM_001040633	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	"protein kinase, AMP-activated, gamma 2 non-catalytic subunit"	protein-coding
chr9.138065713.-	chr9	138065713	138065714	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7742	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr7.1570431.-	chr7	1570431	1570432	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-63	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr1.2428217.+	chr1	2428217	2428218	+	0	NA	"intron (NM_014638, intron 14 of 21)"	"intron (NM_014638, intron 14 of 21)"	20463	NM_014638	9651	Hs.170156	NM_014638	ENSG00000149527	PLCH2	PLC-eta2|PLCL4|PLCeta2	"phospholipase C, eta 2"	protein-coding
chr19.49186321.-	chr19	49186321	49186322	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10057	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr22.50987295.+	chr22	50987295	50987296	+	0	NA	"exon (NM_138433, exon 1 of 1)"	"exon (NM_138433, exon 1 of 1)"	833	NM_138433	113730	Hs.137007	NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
chr2.133620646.+	chr2	133620646	133620647	+	0	NA	"intron (NM_207363, intron 10 of 19)"	AluSx4|SINE|Alu	-191576	NM_001077427	116372	Hs.432395	NM_001077427		LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
chr2.242143599.+	chr2	242143599	242143600	+	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	15675	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr20.60953251.+	chr20	60953251	60953252	+	0	NA	Intergenic	Intergenic	-8870	NM_001024	6227	Hs.190968	NM_001024	ENSG00000171858	RPS21	S21	ribosomal protein S21	protein-coding
chr2.160760313.+	chr2	160760313	160760314	+	0	NA	"intron (NM_001198759, intron 1 of 38)"	"intron (NM_001198759, intron 1 of 38)"	954	NM_001198760	100526664	Hs.153563	NM_001198759	ENSG00000248672	LY75-CD302	-	LY75-CD302 readthrough	protein-coding
chr7.130728512.+	chr7	130728512	130728513	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63277	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr12.56394756.-	chr12	56394756	56394757	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3713	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr9.36596653.+	chr9	36596653	36596654	+	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	23794	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr4.190662162.+	chr4	190662162	190662163	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199812	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr12.108297657.+	chr12	108297657	108297658	+	0	NA	promoter-TSS (NR_037629)	promoter-TSS (NR_037629)	-109	NR_037629	728739	Hs.741995	NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
chr10.20637955.-	chr10	20637955	20637956	-	0	NA	Intergenic	AluSg4|SINE|Alu	202944	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr1.31727333.-	chr1	31727333	31727334	-	0	NA	Intergenic	AluY|SINE|Alu	14599	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr2.237067796.-	chr2	237067796	237067797	-	0	NA	Intergenic	Intergenic	-8856	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr5.166327473.+	chr5	166327473	166327474	+	0	NA	Intergenic	AluY|SINE|Alu	-384370	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr9.28773092.+	chr9	28773092	28773093	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53789	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr1.852014.-	chr1	852014	852015	-	0	NA	TTS (NR_026874)	TTS (NR_026874)	-2803	NR_026874	100130417	Hs.200644	NR_026874		LOC100130417	-	uncharacterized LOC100130417	miscRNA
chr16.10077548.-	chr16	10077548	10077549	-	0	NA	"intron (NM_001134408, intron 2 of 13)"	AluY|SINE|Alu	-198376	NM_001134408	2903	Hs.411472	NM_000833	ENSG00000183454	GRIN2A	EPND|GluN2A|NMDAR2A|NR2A	"glutamate receptor, ionotropic, N-methyl D-aspartate 2A"	protein-coding
chr1.21892972.+	chr1	21892972	21892973	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57114	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr8.94702744.+	chr8	94702744	94702745	+	0	NA	"intron (NR_033858, intron 1 of 10)"	AluSq2|SINE|Alu	9917	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	miscRNA
chr9.141038917.-	chr9	141038917	141038918	-	0	NA	Intergenic	Intergenic	5648	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr18.77627509.-	chr18	77627509	77627510	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3841	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr7.5570052.+	chr7	5570052	5570053	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	180	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr19.34958563.+	chr19	34958563	34958564	+	0	NA	"intron (NM_005499, intron 16 of 16)"	AluSx3|SINE|Alu	-14317	NM_001080436	126374	Hs.585010	NM_001080436		WTIP	-	Wilms tumor 1 interacting protein	protein-coding
chr3.196112285.+	chr3	196112285	196112286	+	0	NA	"intron (NM_015562, intron 5 of 10)"	SVA_B|Other|Other	-46994	NM_001204898	116211	Hs.733264	NM_001204897	ENSG00000145107	TM4SF19	-	transmembrane 4 L six family member 19	protein-coding
chr7.27204956.-	chr7	27204956	27204957	-	0	NA	"exon (NM_152739, exon 1 of 2)"	"exon (NM_152739, exon 1 of 2)"	-193	NM_152739	3205	Hs.659350	NM_152739	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
chr6.109611743.+	chr6	109611743	109611744	+	0	NA	Intergenic	CpG	-3763	NR_028595	221262	Hs.723571	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	"coiled-coil domain containing 162, pseudogene"	pseudo
chr7.6454020.+	chr7	6454020	6454021	+	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	33623	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr16.587013.-	chr16	587013	587014	-	0	NA	"intron (NM_005632, intron 3 of 13)"	"intron (NM_005632, intron 3 of 13)"	-1697	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	miscRNA
chr22.41715333.-	chr22	41715333	41715334	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17826	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr1.110881054.+	chr1	110881054	110881055	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	739	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr10.122148853.+	chr10	122148853	122148854	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67613	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr16.67519958.+	chr16	67519958	67519959	+	0	NA	Intergenic	AluY|SINE|Alu	-2242	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr19.15334419.-	chr19	15334419	15334420	-	0	NA	Intergenic	CpG	-8812	NM_024794	79852	Hs.156457	NM_001142886	ENSG00000105131	EPHX3	ABHD9	epoxide hydrolase 3	protein-coding
chr11.77751923.+	chr11	77751923	77751924	+	0	NA	"intron (NM_001203262, intron 1 of 2)"	AluSq2|SINE|Alu	-17603	NM_023930	65987	Hs.709780	NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerisation domain containing 14	protein-coding
chr3.42642501.-	chr3	42642501	42642502	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-71	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr19.8394132.-	chr19	8394132	8394133	-	0	NA	"intron (NM_198471, intron 7 of 10)"	AluSx|SINE|Alu	-7748	NM_001031	6234	Hs.740394	NM_001031		RPS28	S28	ribosomal protein S28	protein-coding
chr19.18416252.+	chr19	18416252	18416253	+	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	17749	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr17.79611151.+	chr17	79611151	79611152	+	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	1802	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr8.1312665.-	chr8	1312665	1312666	-	0	NA	Intergenic	Intergenic	61838	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr15.25425827.+	chr15	25425827	25425828	+	0	NA	TTS (NR_003298)	TTS (NR_003298)	183	NR_003298	100033443		NR_003298	ENSG00000200812	SNORD115-6	HBII-52-6	"small nucleolar RNA, C/D box 115-6"	snoRNA
chr9.137588935.+	chr9	137588935	137588936	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55283	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr7.158072671.+	chr7	158072671	158072672	+	0	NA	"intron (NM_130842, intron 2 of 21)"	"intron (NM_130842, intron 2 of 21)"	252834	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr12.127898777.+	chr12	127898777	127898778	+	0	NA	Intergenic	Intergenic	-467385	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr12.133141206.+	chr12	133141206	133141207	+	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	45831	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr19.14508398.-	chr19	14508398	14508399	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16442	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr2.35387177.-	chr2	35387177	35387178	-	0	NA	Intergenic	AluY|SINE|Alu	-1195536	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr2.10130537.+	chr2	10130537	10130538	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSx1|SINE|Alu	38745	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr3.93689474.-	chr3	93689474	93689475	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3460	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr12.34191968.+	chr12	34191968	34191969	+	0	NA	Intergenic	AluSp|SINE|Alu	16752	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr17.1226112.-	chr17	1226112	1226113	-	0	NA	Intergenic	AluSx|SINE|Alu	-43155	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr12.51681423.-	chr12	51681423	51681424	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluSq2|SINE|Alu	17221	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr9.115480390.+	chr9	115480390	115480391	+	0	NA	promoter-TSS (NM_021218)	promoter-TSS (NM_021218)	-3	NM_021218	58493	Hs.658575	NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
chr2.92172346.+	chr2	92172346	92172347	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43187	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr13.111268300.-	chr13	111268300	111268301	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-369	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr9.139775646.+	chr9	139775646	139775647	+	0	NA	Intergenic	AluSp|SINE|Alu	-5319	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr19.3766706.-	chr19	3766706	3766707	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4041	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr1.153961770.-	chr1	153961770	153961771	-	0	NA	Intergenic	AluY|SINE|Alu	1469	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr4.163164026.+	chr4	163164026	163164027	+	0	NA	Intergenic	AluY|SINE|Alu	-78840	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr11.915977.+	chr11	915977	915978	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-919	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr13.20533114.+	chr13	20533114	20533115	+	0	NA	"intron (NM_001190965, intron 1 of 24)"	CpG-6213	140	NM_001190965	7750	Hs.507433	NM_001190964	ENSG00000121741	ZMYM2	FIM|MYM|RAMP|SCLL|ZNF198	"zinc finger, MYM-type 2"	protein-coding
chr8.123636946.-	chr8	123636946	123636947	-	0	NA	Intergenic	AluSx|SINE|Alu	156955	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr16.75369584.-	chr16	75369584	75369585	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluY|SINE|Alu	67633	NM_001170715	9564	Hs.479747	NM_001170714	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
chr12.130309714.+	chr12	130309714	130309715	+	0	NA	"intron (NM_133448, intron 1 of 8)"	AluSx|SINE|Alu	78498	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr2.54197646.+	chr2	54197646	54197647	+	0	NA	"intron (NM_014614, intron 1 of 46)"	GC_rich|Low_complexity|Low_complexity	331	NM_014614	23198	Hs.413801	NM_014614	ENSG00000068878	PSME4	PA200	"proteasome (prosome, macropain) activator subunit 4"	protein-coding
chr1.24513601.-	chr1	24513601	24513602	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-164	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr11.31337032.+	chr11	31337032	31337033	+	0	NA	"intron (NM_181807, intron 3 of 8)"	AluY|SINE|Alu	54325	NM_181807	341019	Hs.592000	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
chr6.57322579.-	chr6	57322579	57322580	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140157	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr19.14508386.-	chr19	14508386	14508387	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16430	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr12.79439099.+	chr12	79439099	79439100	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-334	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr10.135008764.+	chr10	135008764	135008765	+	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	34793	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr22.20137597.-	chr22	20137597	20137598	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	166	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr7.16632890.+	chr7	16632890	16632891	+	0	NA	Intergenic	AluJb|SINE|Alu	52552	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr20.2505765.-	chr20	2505765	2505766	-	0	NA	Intergenic	CpG	11488	NM_080751	117532	Hs.352626	NM_080751	ENSG00000149488	TMC2	C20orf145|dJ686C3.3	transmembrane channel-like 2	protein-coding
chr9.130734355.+	chr9	130734355	130734356	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8457	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr6.137113299.-	chr6	137113299	137113300	-	0	NA	"5' UTR (NM_005923, exon 1 of 30)"	"5' UTR (NM_005923, exon 1 of 30)"	-357	NM_005923	4217	Hs.186486	NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
chr21.32916809.-	chr21	32916809	32916810	-	0	NA	"intron (NM_003253, intron 1 of 28)"	AluSx1|SINE|Alu	-14481	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr14.106359691.-	chr14	106359691	106359692	-	0	NA	Intergenic	Intergenic	24147	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr15.93372490.-	chr15	93372490	93372491	-	0	NA	Intergenic	AluSg|SINE|Alu	-33776	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr16.30538579.-	chr16	30538579	30538580	-	0	NA	promoter-TSS (NM_024671)	promoter-TSS (NM_024671)	669	NM_024671	79724	Hs.85658	NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
chr3.47865641.+	chr3	47865641	47865642	+	0	NA	"intron (NM_014966, intron 5 of 22)"	AluSx|SINE|Alu	21242	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|RETCOR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding
chr2.25757649.-	chr2	25757649	25757650	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-115442	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr19.267145.-	chr19	267145	267146	-	0	NA	Intergenic	CpG	-24024	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr19.9879359.+	chr19	9879359	9879360	+	0	NA	promoter-TSS (NM_001077624)	promoter-TSS (NM_001077624)	51	NM_001077624	162993	Hs.665717	NM_001077624	ENSG00000196605	ZNF846	-	zinc finger protein 846	protein-coding
chr19.21728104.+	chr19	21728104	21728105	+	0	NA	Intergenic	AluYc|SINE|Alu	39667	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr10.104238444.-	chr10	104238444	104238445	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17274	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr2.43254196.-	chr2	43254196	43254197	-	0	NA	Intergenic	Intergenic	-199549	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr1.151742004.-	chr1	151742004	151742005	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2873	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr1.176733867.+	chr1	176733867	176733868	+	0	NA	"intron (NM_020318, intron 14 of 22)"	AluY|SINE|Alu	264714	NR_030163	574441		NR_030163		MIR488	MIRN488|hsa-mir-488	microRNA 488	miscRNA
chr1.151742022.-	chr1	151742022	151742023	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2891	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr11.2213958.-	chr11	2213958	2213959	-	0	NA	Intergenic	Intergenic	-19665	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr18.7062503.+	chr18	7062503	7062504	+	0	NA	"intron (NM_005559, intron 3 of 62)"	"intron (NM_005559, intron 3 of 62)"	55310	NM_005559	284217	Hs.270364	NM_005559	ENSG00000101680	LAMA1	LAMA|S-LAM-alpha	"laminin, alpha 1"	protein-coding
chr9.100092115.+	chr9	100092115	100092116	+	0	NA	"intron (NR_036529, intron 27 of 44)"	AluY|SINE|Alu	22205	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
chr11.66025780.+	chr11	66025780	66025781	+	0	NA	"intron (NM_001134774, intron 1 of 14)"	CpG	606	NM_022822	64837	Hs.280792	NM_001134774	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
chr11.73486306.+	chr11	73486306	73486307	+	0	NA	Intergenic	SVA_C|Other|Other	-12611	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr8.609222.+	chr8	609222	609223	+	0	NA	Intergenic	Intergenic	72004	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr22.38498773.-	chr22	38498773	38498774	-	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	-7903	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chrX.53111671.+	chrX	53111671	53111672	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	129	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.38870498.-	chr2	38870498	38870499	-	0	NA	Intergenic	LTR12C|LTR|ERV1	22554	NM_138801	130589	Hs.435012	NM_138801	ENSG00000143891	GALM	IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
chr12.8777862.-	chr12	8777862	8777863	-	0	NA	Intergenic	Intergenic	12420	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chrX.1379100.+	chrX	1379100	1379101	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8593	NM_172249	1438	Hs.520937	NM_001161529	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	"colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)"	protein-coding
chr11.68080259.+	chr11	68080259	68080260	+	0	NA	"exon (NM_002335, exon 1 of 23)"	"exon (NM_002335, exon 1 of 23)"	151	NM_002335	4041	Hs.6347	NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
chr15.27067586.-	chr15	27067586	27067587	-	0	NA	Intergenic	LTR52|LTR|ERVL	44280	NM_000810	2558	Hs.24969	NM_000810	ENSG00000186297	GABRA5	-	"gamma-aminobutyric acid (GABA) A receptor, alpha 5"	protein-coding
chr22.44845283.+	chr22	44845283	44845284	+	0	NA	Intergenic	Intergenic	48722	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr19.470938.-	chr19	470938	470939	-	0	NA	"intron (NM_182577, intron 2 of 3)"	"intron (NM_182577, intron 2 of 3)"	-4045	NM_182577	284451	Hs.104777	NM_182577	ENSG00000181781	ODF3L2	C19orf19	outer dense fiber of sperm tails 3-like 2	protein-coding
chr16.88387012.+	chr16	88387012	88387013	+	0	NA	Intergenic	L2b|LINE|L2	-106867	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr12.131419292.-	chr12	131419292	131419293	-	0	NA	Intergenic	AluSz|SINE|Alu	19160	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr17.29249392.+	chr17	29249392	29249393	+	0	NA	"intron (NM_018404, intron 1 of 10)"	CpG	638	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chrX.47334422.-	chrX	47334422	47334423	-	0	NA	"intron (NM_153380, intron 1 of 4)"	AluYk12|SINE|Alu	-7923	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr9.34969457.-	chr9	34969457	34969458	-	0	NA	"intron (NM_015297, intron 1 of 7)"	AluSc8|SINE|Alu	-11265	NM_015297	23349	Hs.7989	NM_015297	ENSG00000122733	KIAA1045	RP11-392A14.4	KIAA1045	protein-coding
chr20.4729635.-	chr20	4729635	4729636	-	0	NA	Intergenic	Intergenic	8321	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr13.110832784.+	chr13	110832784	110832785	+	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	126712	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chr17.79427766.-	chr17	79427766	79427767	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9552	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr7.2716341.-	chr7	2716341	2716342	-	0	NA	Intergenic	Intergenic	2822	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr11.18743365.-	chr11	18743365	18743366	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4412	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr13.21872298.-	chr13	21872298	21872299	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-34	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr14.102954966.+	chr14	102954966	102954967	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21162	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr21.45197212.-	chr21	45197212	45197213	-	0	NA	promoter-TSS (NM_000100)	promoter-TSS (NM_000100)	956	NM_000100	1476	Hs.695	NM_000100		CSTB	CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B (stefin B)	protein-coding
chr19.10408180.-	chr19	10408180	10408181	-	0	NA	TTS (NM_003259)	TTS (NM_003259)	-7525	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr12.20930579.-	chr12	20930579	20930580	-	0	NA	Intergenic	LTR12C|LTR|ERV1	33059	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr10.135031499.+	chr10	135031499	135031500	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12279	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr1.217697500.+	chr1	217697500	217697501	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106909	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chrX.30619904.+	chrX	30619904	30619905	+	0	NA	Intergenic	SVA_F|Other|Other	-23871	NM_025159	80231	Hs.665009	NM_025159	ENSG00000120280	CXorf21	-	chromosome X open reading frame 21	protein-coding
chrX.70362684.+	chrX	70362684	70362685	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-1997	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr15.100514144.-	chr15	100514144	100514145	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167012	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr14.106358755.+	chr14	106358755	106358756	+	0	NA	Intergenic	Intergenic	-25083	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr4.185656722.+	chr4	185656722	185656723	+	0	NA	Intergenic	AluY|SINE|Alu	-1436	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr1.102295553.-	chr1	102295553	102295554	-	0	NA	"intron (NM_058170, intron 3 of 5)"	AluY|SINE|Alu	42014	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	"DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5"	pseudo
chr9.10974534.-	chr9	10974534	10974535	-	0	NA	Intergenic	L1PBa|LINE|L1	361811	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr12.32200035.+	chr12	32200035	32200036	+	0	NA	Intergenic	AluSz|SINE|Alu	-53233	NR_046944	100873778		NR_046944		RNU6-78	-	"RNA, U6 small nuclear 78"	snRNA
chr6.46742380.+	chr6	46742380	46742381	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18714	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr22.24237296.+	chr22	24237296	24237297	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	731	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr3.112807973.+	chr3	112807973	112807974	+	0	NA	Intergenic	AluYc|SINE|Alu	-69418	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr2.4156402.-	chr2	4156402	4156403	-	0	NA	Intergenic	CpG	134780	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr20.62526285.-	chr20	62526285	62526286	-	0	NA	promoter-TSS (NM_025219)	promoter-TSS (NM_025219)	170	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr6.12012482.+	chr6	12012482	12012483	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-242	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr17.27019338.-	chr17	27019338	27019339	-	0	NA	"intron (NM_003170, intron 27 of 36)"	AluY|SINE|Alu	-19534	NM_152465	147011	Hs.207471	NM_152465		PROCA1	-	protein interacting with cyclin A1	protein-coding
chr4.186887697.-	chr4	186887697	186887698	-	0	NA	Intergenic	AluSx1|SINE|Alu	9827	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr6.150413233.-	chr6	150413233	150413234	-	0	NA	Intergenic	AluY|SINE|Alu	23031	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr1.10727895.-	chr1	10727895	10727896	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128838	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr12.89754101.+	chr12	89754101	89754102	+	0	NA	Intergenic	AluY|SINE|Alu	-7805	NM_022652	1848	Hs.718640	NM_001946	ENSG00000139318	DUSP6	MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chr10.95605046.-	chr10	95605046	95605047	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48684	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr16.4537763.+	chr16	4537763	4537764	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8096	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr19.36762847.-	chr19	36762847	36762848	-	0	NA	Intergenic	SST1|Satellite|centr	39398	NR_029389	100134317	Hs.729610	NR_029389		LOC100134317	-	uncharacterized LOC100134317	miscRNA
chr9.137594138.-	chr9	137594138	137594139	-	0	NA	"intron (NM_000093, intron 4 of 65)"	"intron (NM_000093, intron 4 of 65)"	-60486	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr12.112161131.+	chr12	112161131	112161132	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37274	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr12.106533446.-	chr12	106533446	106533447	-	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	-365	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr5.3764269.+	chr5	3764269	3764270	+	0	NA	Intergenic	Intergenic	168101	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr10.129195994.-	chr10	129195994	129195995	-	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	151619	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr1.149646789.+	chr1	149646789	149646790	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70336	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr1.247470017.-	chr1	247470017	247470018	-	0	NA	"intron (NM_032752, intron 8 of 8)"	AluSx1|SINE|Alu	-25028	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr14.52633484.+	chr14	52633484	52633485	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-97538	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
chr11.1090254.+	chr11	1090254	1090255	+	0	NA	"intron (NM_002457, intron 26 of 49)"	"intron (NM_002457, intron 26 of 49)"	15379	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr1.24829820.+	chr1	24829820	24829821	+	0	NA	promoter-TSS (NR_045407)	promoter-TSS (NR_045407)	433	NM_001251981	11123	Hs.737226	NM_001251977	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
chr7.1570449.-	chr7	1570449	1570450	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-81	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr22.30781376.+	chr22	30781376	30781377	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1926	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr16.440475.+	chr16	440475	440476	+	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	-6717	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr15.40600750.-	chr15	40600750	40600751	-	0	NA	promoter-TSS (NM_004573)	promoter-TSS (NM_004573)	576	NM_004573	5330	Hs.355888	NM_004573	ENSG00000137841	PLCB2	-	"phospholipase C, beta 2"	protein-coding
chr9.138437860.+	chr9	138437860	138437861	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-125	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr6.55774908.-	chr6	55774908	55774909	-	0	NA	Intergenic	SVA_D|Other|Other	34533	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr13.111467724.-	chr13	111467724	111467725	-	0	NA	Intergenic	Intergenic	-54931	NR_027701	283487	Hs.245390	NM_178514		LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	miscRNA
chr12.123259467.+	chr12	123259467	123259468	+	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	411	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chr8.141523810.-	chr8	141523810	141523811	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1729	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr18.1924554.+	chr18	1924554	1924555	+	0	NA	Intergenic	AluSp|SINE|Alu	-564924	NR_023926	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	miscRNA
chr12.56132116.-	chr12	56132116	56132117	-	0	NA	Intergenic	Intergenic	4948	NM_005811	10220	Hs.600883	NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11	growth differentiation factor 11	protein-coding
chr21.45649022.-	chr21	45649022	45649023	-	0	NA	"intron (NM_015259, intron 6 of 6)"	"intron (NM_015259, intron 6 of 6)"	-11812	NM_015259	23308	Hs.14155	NM_015259		ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T-cell co-stimulator ligand	protein-coding
chr20.47588422.-	chr20	47588422	47588423	-	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	-50147	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr7.91257037.-	chr7	91257037	91257038	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252979	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr17.45349537.-	chr17	45349537	45349538	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18329	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr4.5892155.-	chr4	5892155	5892156	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1840	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr14.102109475.-	chr14	102109475	102109476	-	0	NA	Intergenic	AluY|SINE|Alu	-81787	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr6.149638251.-	chr6	149638251	149638252	-	0	NA	Intergenic	CpG	1185	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr2.203100556.+	chr2	203100556	203100557	+	0	NA	"intron (NM_003352, intron 1 of 4)"	AluSg|SINE|Alu	2766	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr2.232354828.-	chr2	232354828	232354829	-	0	NA	Intergenic	LTR13|LTR|ERVK	-24222	NR_024079	151477	Hs.375211	NR_024079	ENSG00000181798	LINC00471	C2orf52	long intergenic non-protein coding RNA 471	miscRNA
chr11.69589284.-	chr11	69589284	69589285	-	0	NA	"intron (NM_002007, intron 1 of 2)"	CpG	-887	NM_002007	2249	Hs.1755	NM_002007	ENSG00000075388	FGF4	HBGF-4|HST|HST-1|HSTF1|K-FGF|KFGF	fibroblast growth factor 4	protein-coding
chr17.28267920.-	chr17	28267920	28267921	-	0	NA	promoter-TSS (NR_026738)	promoter-TSS (NR_026738)	703	NM_198529	374786	Hs.662411	NM_001033562	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
chr8.118789930.-	chr8	118789930	118789931	-	0	NA	Intergenic	SVA_B|Other|Other	-256965	NM_080651	90390	Hs.492612	NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
chr6.106301638.-	chr6	106301638	106301639	-	0	NA	Intergenic	SVA_D|Other|Other	232557	NM_001198	639	Hs.436023	NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	"PR domain containing 1, with ZNF domain"	protein-coding
chr5.179173229.+	chr5	179173229	179173230	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluSx1|SINE|Alu	13378	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr9.137588870.+	chr9	137588870	137588871	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55218	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr6.146183412.+	chr6	146183412	146183413	+	0	NA	"intron (NR_038246, intron 2 of 2)"	AluYc|SINE|Alu	47400	NR_038244	100507557	Hs.124537	NR_038244		LOC100507557	-	uncharacterized LOC100507557	miscRNA
chr13.31734985.-	chr13	31734985	31734986	-	0	NA	"intron (NM_006644, intron 1 of 17)"	"intron (NM_006644, intron 1 of 17)"	-1132	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr1.40330222.+	chr1	40330222	40330223	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18955	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr6.170480312.+	chr6	170480312	170480313	+	0	NA	Intergenic	Intergenic	91345	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr11.120093121.+	chr11	120093121	120093122	+	0	NA	"intron (NM_178507, intron 1 of 3)"	AluSx|SINE|Alu	11374	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr2.114081702.-	chr2	114081702	114081703	-	0	NA	Intergenic	Intergenic	45204	NM_003466	7849	Hs.469728	NM_003466	ENSG00000125618	PAX8	-	paired box 8	protein-coding
chr13.23981431.-	chr13	23981431	23981432	-	0	NA	"intron (NM_014363, intron 2 of 9)"	AluY|SINE|Alu	-26410	NM_014363	26278	Hs.159492	NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29	spastic ataxia of Charlevoix-Saguenay (sacsin)	protein-coding
chr16.84017797.+	chr16	84017797	84017798	+	0	NA	"intron (NM_019065, intron 5 of 12)"	AluY|SINE|Alu	15560	NM_019065	54550	Hs.140950	NM_019065	ENSG00000103154	NECAB2	EFCBP2	N-terminal EF-hand calcium binding protein 2	protein-coding
chr8.60674717.-	chr8	60674717	60674718	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519237	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr11.507345.-	chr11	507345	507346	-	0	NA	promoter-TSS (NM_002939)	promoter-TSS (NM_002939)	62	NM_203387	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
chr6.134589703.-	chr6	134589703	134589704	-	0	NA	"intron (NM_001143676, intron 1 of 13)"	AluY|SINE|Alu	-49493	NM_001143676	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr5.89746514.-	chr5	89746514	89746515	-	0	NA	Intergenic	AluSz|SINE|Alu	-24071	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr2.91874349.+	chr2	91874349	91874350	+	0	NA	Intergenic	CpG	-26374	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr1.54775779.+	chr1	54775779	54775780	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96200	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr2.105827782.+	chr2	105827782	105827783	+	0	NA	Intergenic	SVA_E|Other|Other	-30418	NM_007227	11250	Hs.590903	NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
chr17.48499810.+	chr17	48499810	48499811	+	0	NA	Intergenic	AluY|SINE|Alu	-3709	NM_025149	80221	Hs.288959	NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
chr9.113404487.+	chr9	113404487	113404488	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26564	NM_001166281	4593	Hs.521653	NM_001166280	ENSG00000030304	MUSK	-	"muscle, skeletal, receptor tyrosine kinase"	protein-coding
chr6.167607762.-	chr6	167607762	167607763	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23681	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr16.9185102.-	chr16	9185102	9185103	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	435	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr16.49892631.+	chr16	49892631	49892632	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-801	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr19.9311333.-	chr19	9311333	9311334	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14214	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr4.114652834.+	chr4	114652834	114652835	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30249	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr22.51142881.+	chr22	51142881	51142882	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29811	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr5.1067389.-	chr5	1067389	1067390	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4300	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr7.73588964.+	chr7	73588964	73588965	+	0	NA	"intron (NM_031992, intron 1 of 5)"	CpG	258	NM_022170	7458	Hs.520943	NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
chr6.12012458.+	chr6	12012458	12012459	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-266	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr16.69455226.-	chr16	69455226	69455227	-	0	NA	Intergenic	AluSq2|SINE|Alu	3272	NM_030579	80777	Hs.461131	NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B (outer mitochondrial membrane)	protein-coding
chr7.1286216.+	chr7	1286216	1286217	+	0	NA	Intergenic	CpG	13562	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr11.64641594.-	chr11	64641594	64641595	-	0	NA	"intron (NM_006795, intron 2 of 4)"	AluSg|SINE|Alu	-4597	NM_006795	10938	Hs.523774	NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH-domain containing 1	protein-coding
chrM.6397.+	chrM	6397	6398	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.123144192.-	chr6	123144192	123144193	-	0	NA	Intergenic	AluY|SINE|Alu	-34221	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr14.101892560.-	chr14	101892560	101892561	-	0	NA	Intergenic	AluY|SINE|Alu	-129453	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr19.12606197.-	chr19	12606197	12606198	-	0	NA	Intergenic	CpG	10565	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr8.125234401.-	chr8	125234401	125234402	-	0	NA	Intergenic	AluSx3|SINE|Alu	-150539	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr7.95234901.-	chr7	95234901	95234902	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8976	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr17.79089801.-	chr17	79089801	79089802	-	0	NA	"3' UTR (NM_001144888, exon 14 of 14)"	"3' UTR (NM_001144888, exon 14 of 14)"	-9372	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr16.53227231.+	chr16	53227231	53227232	+	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	138286	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr20.5616800.+	chr20	5616800	5616801	+	0	NA	Intergenic	MER41A|LTR|ERV1	-25128	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	protein-coding
chr16.8974126.+	chr16	8974126	8974127	+	0	NA	Intergenic	Intergenic	-11263	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr6.170480311.+	chr6	170480311	170480312	+	0	NA	Intergenic	Intergenic	91346	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr13.72731933.+	chr13	72731933	72731934	+	0	NA	Intergenic	AluY|SINE|Alu	-290603	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr2.121244096.-	chr2	121244096	121244097	-	0	NA	Intergenic	Intergenic	20171	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr17.18179033.-	chr17	18179033	18179034	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14609	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr17.40544003.+	chr17	40544003	40544004	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3490	NM_139276	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr9.35728422.+	chr9	35728422	35728423	+	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	-3895	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr14.47289606.+	chr14	47289606	47289607	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-168578	NM_080746	140801	Hs.308332	NM_080746	ENSG00000165496	RPL10L	RPL10_5_1358	ribosomal protein L10-like	protein-coding
chr10.134411422.-	chr10	134411422	134411423	-	0	NA	"intron (NM_005539, intron 1 of 15)"	CpG	-60069	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr12.112123610.-	chr12	112123610	112123611	-	0	NA	promoter-TSS (NM_001136538)	promoter-TSS (NM_001136538)	-180	NM_006768	8315	Hs.530940	NM_006768		BRAP	BRAP2|IMP|RNF52	BRCA1 associated protein	protein-coding
chr5.128196998.+	chr5	128196998	128196999	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104212	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr6.150275496.+	chr6	150275496	150275497	+	0	NA	Intergenic	CpG	-9647	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr16.9176171.+	chr16	9176171	9176172	+	0	NA	Intergenic	AluSx|SINE|Alu	-9366	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr16.33293936.-	chr16	33293936	33293937	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4766	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr9.138959031.+	chr9	138959031	138959032	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28100	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr12.96314629.+	chr12	96314629	96314630	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21799	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr5.693624.+	chr5	693624	693625	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-114	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr17.45078380.+	chr17	45078380	45078381	+	0	NA	Intergenic	AluSg4|SINE|Alu	-21766	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr8.139779953.+	chr8	139779953	139779954	+	0	NA	"intron (NM_152888, intron 16 of 64)"	"intron (NM_152888, intron 16 of 64)"	146283	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	"collagen, type XXII, alpha 1"	protein-coding
chr2.122878785.+	chr2	122878785	122878786	+	0	NA	Intergenic	AluY|SINE|Alu	365664	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr6.1610252.+	chr6	1610252	1610253	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-429	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr9.6858737.+	chr9	6858737	6858738	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101096	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr22.47162094.-	chr22	47162094	47162095	-	0	NA	"intron (NM_014346, intron 1 of 12)"	AluY|SINE|Alu	-3576	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr14.105618915.-	chr14	105618915	105618916	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16246	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr8.120565238.+	chr8	120565238	120565239	+	0	NA	Intergenic	AluSc8|SINE|Alu	40010	NR_045555	5168	Hs.190977	NM_001040092	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
chr1.181074635.-	chr1	181074635	181074636	-	0	NA	Intergenic	CpG	-16997	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr8.134309716.-	chr8	134309716	134309717	-	0	NA	promoter-TSS (NM_001135242)	promoter-TSS (NM_001135242)	169	NM_006096	10397	Hs.618002	NM_001135242	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
chr1.113336836.-	chr1	113336836	113336837	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73647	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr10.131769971.+	chr10	131769971	131769972	+	0	NA	Intergenic	CpG-3433	-7880	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr6.12012452.+	chr6	12012452	12012453	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-272	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr1.197418614.+	chr1	197418614	197418615	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181280	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr18.73357733.-	chr18	73357733	73357734	-	0	NA	Intergenic	L2|LINE|L2	218144	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr10.24476839.-	chr10	24476839	24476840	-	0	NA	"intron (NM_001098500, intron 2 of 18)"	"intron (NM_001098500, intron 2 of 18)"	20881	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr11.34488073.+	chr11	34488073	34488074	+	0	NA	"intron (NM_001752, intron 10 of 12)"	AluY|SINE|Alu	27601	NM_001752	847	Hs.502302	NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
chr16.30674111.-	chr16	30674111	30674112	-	0	NA	Intergenic	Intergenic	1667	NM_001105079	64319	Hs.247186	NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
chr2.236999578.+	chr2	236999578	236999579	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	77074	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr5.170687178.-	chr5	170687178	170687179	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49110	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr11.17905662.+	chr11	17905662	17905663	+	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	128975	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr7.5582512.+	chr7	5582512	5582513	+	0	NA	Intergenic	Intergenic	-12280	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr6.7051301.-	chr6	7051301	7051302	-	0	NA	Intergenic	Intergenic	56529	NM_001168344	6239	Hs.298248	NM_001003698	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
chr10.101292652.+	chr10	101292652	101292653	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-38	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr15.27137281.-	chr15	27137281	27137282	-	0	NA	"intron (NM_001165037, intron 6 of 10)"	"intron (NM_001165037, intron 6 of 10)"	-25008	NM_001165037	2558	Hs.24969	NM_000810	ENSG00000186297	GABRA5	-	"gamma-aminobutyric acid (GABA) A receptor, alpha 5"	protein-coding
chr10.104209671.+	chr10	104209671	104209672	+	0	NA	promoter-TSS (NR_038938)	promoter-TSS (NR_038938)	97	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr21.35774209.+	chr21	35774209	35774210	+	0	NA	Intergenic	AluSc8|SINE|Alu	26460	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr6.94128492.+	chr6	94128492	94128493	+	0	NA	"intron (NM_004440, intron 1 of 16)"	CpG	808	NM_004440	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK3|HEK11	EPH receptor A7	protein-coding
chr4.1626792.+	chr4	1626792	1626793	+	0	NA	Intergenic	CpG	58926	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr5.163564196.+	chr5	163564196	163564197	+	0	NA	Intergenic	AluSx1|SINE|Alu	631662	NM_013283	27430	Hs.54642	NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	"methionine adenosyltransferase II, beta"	protein-coding
chr16.215821.+	chr16	215821	215822	+	0	NA	promoter-TSS (NM_001003938)	promoter-TSS (NM_001003938)	-152	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr2.234389635.+	chr2	234389635	234389636	+	0	NA	"intron (NM_018218, intron 30 of 30)"	"intron (NM_018218, intron 30 of 30)"	84601	NM_018218	55230	Hs.96513	NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
chr2.10424824.+	chr2	10424824	10424825	+	0	NA	Intergenic	Intergenic	-18206	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr2.1554793.+	chr2	1554793	1554794	+	0	NA	Intergenic	Intergenic	136613	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr1.9832299.+	chr1	9832299	9832300	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52251	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr10.104255202.+	chr10	104255202	104255203	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7310	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr14.76577633.+	chr14	76577633	76577634	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40626	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr9.16748444.+	chr9	16748444	16748445	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	122342	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr12.112161425.-	chr12	112161425	112161426	-	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_F|Other|Other	-37568	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr8.86574380.+	chr8	86574380	86574381	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	362	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr9.138397725.+	chr9	138397725	138397726	+	0	NA	Intergenic	Intergenic	5248	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chrX.39680409.+	chrX	39680409	39680410	+	0	NA	Intergenic	CpG	276310	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr5.17207841.-	chr5	17207841	17207842	-	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	9091	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr8.111696865.-	chr8	111696865	111696866	-	0	NA	Intergenic	AluY|SINE|Alu	709906	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr11.66997308.+	chr11	66997308	66997309	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10198	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr8.99067016.-	chr8	99067016	99067017	-	0	NA	Intergenic	AluSx|SINE|Alu	9198	NM_000989	6156	Hs.400295	NM_000989	ENSG00000156482	RPL30	L30	ribosomal protein L30	protein-coding
chr7.140185558.-	chr7	140185558	140185559	-	0	NA	Intergenic	FLAM_C|SINE|Alu	6189	NM_013446	23608	Hs.490347	NM_001145125	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
chr6.161529484.-	chr6	161529484	161529485	-	0	NA	"intron (NM_005922, intron 21 of 26)"	"intron (NM_005922, intron 21 of 26)"	-53530	NR_024277	79992	Hs.664873	NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1 (non-protein coding)	miscRNA
chr5.176057262.+	chr5	176057262	176057263	+	0	NA	promoter-TSS (NM_001099408)	promoter-TSS (NM_001099408)	295	NM_003085	6620	Hs.90297	NM_001001502	ENSG00000074317	SNCB	-	"synuclein, beta"	protein-coding
chr3.25825165.+	chr3	25825165	25825166	+	0	NA	promoter-TSS (NM_001145295)	promoter-TSS (NM_001145295)	-176	NM_001145293	55768	Hs.743367	NM_001145293	ENSG00000151092	NGLY1	PNG1|PNGase	N-glycanase 1	protein-coding
chr3.129048053.+	chr3	129048053	129048054	+	0	NA	Intergenic	AluY|SINE|Alu	-12933	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr3.126207242.-	chr3	126207242	126207243	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12480	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chrX.68786575.+	chrX	68786575	68786576	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49336	NM_001005610	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr2.61701797.-	chr2	61701797	61701798	-	0	NA	Intergenic	AluSg|SINE|Alu	3948	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr9.66486340.+	chr9	66486340	66486341	+	0	NA	Intergenic	Intergenic	-7929	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr11.86869695.-	chr11	86869695	86869696	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-120809	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr16.66799644.+	chr16	66799644	66799645	+	0	NA	"intron (NM_001136505, intron 16 of 18)"	AluSx|SINE|Alu	-14119	NM_006141	1783	Hs.369068	NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	"dynein, cytoplasmic 1, light intermediate chain 2"	protein-coding
chr12.79439010.-	chr12	79439010	79439011	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	423	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr16.2510638.-	chr16	2510638	2510639	-	0	NA	"exon (NM_025108, exon 3 of 10)"	"exon (NM_025108, exon 3 of 10)"	-523	NM_025108	80178	Hs.534491	NM_025108	ENSG00000162062	C16orf59	-	chromosome 16 open reading frame 59	protein-coding
chr10.133869262.+	chr10	133869262	133869263	+	0	NA	Intergenic	Intergenic	-49051	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr4.166248537.+	chr4	166248537	166248538	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-281	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr6.1377709.+	chr6	1377709	1377710	+	0	NA	Intergenic	AluSg|SINE|Alu	-12360	NM_001452	2295	Hs.484423	NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
chr16.3229142.-	chr16	3229142	3229143	-	0	NA	Intergenic	AluSp|SINE|Alu	25105	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr9.100615908.-	chr9	100615908	100615909	-	0	NA	"5' UTR (NM_004473, exon 1 of 1)"	"5' UTR (NM_004473, exon 1 of 1)"	-371	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2	forkhead box E1 (thyroid transcription factor 2)	protein-coding
chr8.142455425.+	chr8	142455425	142455426	+	0	NA	"intron (NR_102364, intron 20 of 26)"	"intron (NR_102364, intron 20 of 26)"	23418	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr5.55029216.+	chr5	55029216	55029217	+	0	NA	Intergenic	AluY|SINE|Alu	-4629	NM_001166533	54514	Hs.223581	NM_019039	ENSG00000152670	DDX4	VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding
chr10.13043570.-	chr10	13043570	13043571	-	0	NA	"exon (NM_031455, exon 1 of 3)"	"exon (NM_031455, exon 1 of 3)"	-134	NM_031455	83643	Hs.498720	NM_031455	ENSG00000151468	CCDC3	-	coiled-coil domain containing 3	protein-coding
chrX.31406377.+	chrX	31406377	31406378	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120038	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr12.128150154.+	chr12	128150154	128150155	+	0	NA	Intergenic	Intergenic	-216008	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr17.32908206.-	chr17	32908206	32908207	-	0	NA	"intron (NM_207313, intron 1 of 9)"	CpG	-438	NM_207313	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	-	transmembrane protein 132E	protein-coding
chr15.56917215.+	chr15	56917215	56917216	+	0	NA	Intergenic	AluSq2|SINE|Alu	108572	NM_017661	54816	Hs.511477	NM_001002843	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
chrX.2974296.+	chrX	2974296	2974297	+	0	NA	"intron (NM_001201539, intron 1 of 10)"	AluJo|SINE|Alu	-10544	NM_004042	416	Hs.101674	NM_001201538	ENSG00000062096	ARSF	ASF	arylsulfatase F	protein-coding
chr9.138663339.+	chr9	138663339	138663340	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69308	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr1.40953668.+	chr1	40953668	40953669	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10366	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr16.79060671.+	chr16	79060671	79060672	+	0	NA	"intron (NM_016373, intron 8 of 8)"	AluY|SINE|Alu	573951	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	protein-coding
chr12.103889601.-	chr12	103889601	103889602	-	0	NA	"5' UTR (NM_001099336, exon 1 of 6)"	"5' UTR (NM_001099336, exon 1 of 6)"	-145	NM_198521	374470	Hs.534649	NM_001099336	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
chr9.137200946.+	chr9	137200946	137200947	+	0	NA	Intergenic	Intergenic	-17370	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr16.69735110.+	chr16	69735110	69735111	+	0	NA	"3' UTR (NM_001113178, exon 15 of 15)"	"3' UTR (NM_001113178, exon 15 of 15)"	25423	NM_001025434	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	"NAD(P)H dehydrogenase, quinone 1"	protein-coding
chr1.31586364.-	chr1	31586364	31586365	-	0	NA	Intergenic	AluY|SINE|Alu	47800	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr19.16869687.-	chr19	16869687	16869688	-	0	NA	"intron (NM_001007525, intron 6 of 18)"	AluSg|SINE|Alu	-38900	NM_001007525	284434	Hs.406014	NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
chr18.34900242.-	chr18	34900242	34900243	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	AluY|SINE|Alu	-245758	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr18.2377788.+	chr18	2377788	2377789	+	0	NA	Intergenic	AluSg7|SINE|Alu	193701	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr7.95234842.+	chr7	95234842	95234843	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8917	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr20.20772501.+	chr20	20772501	20772502	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79235	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr19.14508399.-	chr19	14508399	14508400	-	0	NA	"intron (NM_078481, intron 6 of 19)"	"intron (NM_078481, intron 6 of 19)"	-16443	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr19.47378066.-	chr19	47378066	47378067	-	0	NA	Intergenic	AluSg|SINE|Alu	23863	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr22.43045011.-	chr22	43045011	43045012	-	0	NA	"intron (NM_000398, intron 1 of 8)"	CpG	-394	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chr9.133320190.+	chr9	133320190	133320191	+	0	NA	promoter-TSS (NM_000050)	promoter-TSS (NM_000050)	96	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
chr4.100009972.+	chr4	100009972	100009973	+	0	NA	promoter-TSS (NM_000671)	promoter-TSS (NM_000671)	-36	NR_037884	100507053	Hs.635084	NR_037884	ENSG00000246090	LOC100507053	-	uncharacterized LOC100507053	miscRNA
chr3.13149427.-	chr3	13149427	13149428	-	0	NA	Intergenic	Intergenic	34810	NM_001134382	9922	Hs.475506	NM_001134382	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
chr8.94702760.-	chr8	94702760	94702761	-	0	NA	"intron (NR_033858, intron 1 of 10)"	AluSq2|SINE|Alu	-9901	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	miscRNA
chr3.183052361.-	chr3	183052361	183052362	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81329	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr15.41613106.-	chr15	41613106	41613107	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11713	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr7.129803687.-	chr7	129803687	129803688	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41651	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr19.5409942.+	chr19	5409942	5409943	+	0	NA	Intergenic	AluY|SINE|Alu	-45484	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr20.38880055.+	chr20	38880055	38880056	+	0	NA	Intergenic	Intergenic	437821	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)	protein-coding
chr3.188566630.+	chr3	188566630	188566631	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323133	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr12.31575314.+	chr12	31575314	31575315	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96155	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr19.11006771.+	chr19	11006771	11006772	+	0	NA	"intron (NM_199141, intron 1 of 15)"	"intron (NM_199141, intron 1 of 15)"	24518	NM_199141	10498	Hs.323213	NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator-associated arginine methyltransferase 1	protein-coding
chr3.82554722.-	chr3	82554722	82554723	-	0	NA	Intergenic	MER52A|LTR|ERV1	743772	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr16.67194352.+	chr16	67194352	67194353	+	0	NA	promoter-TSS (NM_003789)	promoter-TSS (NM_003789)	461	NM_018378	55336	Hs.710714	NM_018378	ENSG00000135722	FBXL8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding
chr11.3224503.+	chr11	3224503	3224504	+	0	NA	Intergenic	Intergenic	-15059	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr19.17434547.+	chr19	17434547	17434548	+	0	NA	TTS (NM_024050)	TTS (NM_024050)	11091	NM_020959	57719	Hs.590990	NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
chr6.170055412.+	chr6	170055412	170055413	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46747	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr12.53183464.+	chr12	53183464	53183465	+	0	NA	TTS (NM_057088)	TTS (NM_057088)	6428	NM_057088	3850	Hs.680652	NM_057088	ENSG00000186442	KRT3	CK3|K3	keratin 3	protein-coding
chr18.11959848.-	chr18	11959848	11959849	-	0	NA	Intergenic	SVA_D|Other|Other	21579	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr17.66332169.-	chr17	66332169	66332170	-	0	NA	"intron (NM_001267727, intron 2 of 11)"	AluSx1|SINE|Alu	-44533	NM_001267727	22901	Hs.437249	NM_001267727		ARSG	-	arylsulfatase G	protein-coding
chr19.7123254.-	chr19	7123254	7123255	-	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	-53783	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr16.443594.+	chr16	443594	443595	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3598	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr1.97228901.+	chr1	97228901	97228902	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41726	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr12.56394761.-	chr12	56394761	56394762	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3718	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr8.107613692.+	chr8	107613692	107613693	+	0	NA	"intron (NM_018002, intron 3 of 15)"	MLT1A|LTR|ERVL-MaLR	-56344	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr17.2462098.-	chr17	2462098	2462099	-	0	NA	Intergenic	AluYf5|SINE|Alu	34825	NM_000430	5048	Hs.77318	NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|PAFAH	"platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)"	protein-coding
chr4.96097956.+	chr4	96097956	96097957	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85314	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr13.19728186.-	chr13	19728186	19728187	-	0	NA	Intergenic	Intergenic	-11064	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr4.40196253.+	chr4	40196253	40196254	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2274	NM_004310	399	Hs.654594	NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
chr2.202898611.-	chr2	202898611	202898612	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	699	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr10.98238062.-	chr10	98238062	98238063	-	0	NA	"intron (NM_012465, intron 2 of 20)"	"intron (NM_012465, intron 2 of 20)"	-35621	NM_012465	7093	Hs.154296	NM_012465	ENSG00000095587	TLL2	-	tolloid-like 2	protein-coding
chr16.88074386.+	chr16	88074386	88074387	+	0	NA	"intron (NM_001173541, intron 10 of 11)"	"intron (NM_001173541, intron 10 of 11)"	70762	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr17.65843616.-	chr17	65843616	65843617	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21836	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr12.34492683.-	chr12	34492683	34492684	-	0	NA	Intergenic	GSATII|Satellite|centr	-317467	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr1.151199113.+	chr1	151199113	151199114	+	0	NA	"intron (NM_001135638, intron 3 of 15)"	AluSq2|SINE|Alu	-28084	NM_002810	5710	Hs.505059	NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 4"	protein-coding
chr16.33966288.-	chr16	33966288	33966289	-	0	NA	Intergenic	CpG	3785	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr14.94255180.+	chr14	94255180	94255181	+	0	NA	promoter-TSS (NM_178013)	promoter-TSS (NM_178013)	-414	NM_178013	145270	Hs.432401	NM_178013	ENSG00000175785	PRIMA1	PRIMA	proline rich membrane anchor 1	protein-coding
chr19.17277013.-	chr19	17277013	17277014	-	0	NA	"intron (NM_004145, intron 10 of 39)"	AluSx|SINE|Alu	49142	NM_018467	55850	Hs.16187	NM_018467	ENSG00000053501	USE1	P31|SLT1	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding
chr12.112407467.+	chr12	112407467	112407468	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43556	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr15.21904903.-	chr15	21904903	21904904	-	0	NA	Intergenic	REP522|Satellite|telo	-35836	NR_027053	646214	Hs.510697	NR_027053		LOC646214	-	p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene	pseudo
chr10.50533776.+	chr10	50533776	50533777	+	0	NA	"exon (NM_001135196, exon 3 of 3)"	"exon (NM_001135196, exon 3 of 3)"	26589	NM_001135196	118461	Hs.585480	NM_199459	ENSG00000177354	C10orf71	-	chromosome 10 open reading frame 71	protein-coding
chr10.21183572.-	chr10	21183572	21183573	-	0	NA	"intron (NM_006393, intron 2 of 27)"	AluY|SINE|Alu	-2959	NM_006393	10529	Hs.5025	NM_001173484	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding
chr8.22594710.-	chr8	22594710	22594711	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43895	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr10.97383344.-	chr10	97383344	97383345	-	0	NA	"intron (NM_001017423, intron 11 of 17)"	AluSp|SINE|Alu	-33223	NM_001017423	5832	Hs.500645	NM_001017423	ENSG00000059573	ALDH18A1	ARCL3A|GSAS|P5CS|PYCS	"aldehyde dehydrogenase 18 family, member A1"	protein-coding
chr6.158438927.+	chr6	158438927	158438928	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	847	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr16.16663368.+	chr16	16663368	16663369	+	0	NA	Intergenic	AluY|SINE|Alu	251902	NR_036447	339044	Hs.743246	XR_172152		PKD1P1	HG1	polycystic kidney disease 1 (autosomal dominant) pseudogene 1	pseudo
chr5.1038047.+	chr5	1038047	1038048	+	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	25042	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr12.132388995.+	chr12	132388995	132388996	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9716	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr12.6866153.+	chr12	6866153	6866154	+	0	NA	Intergenic	AluSp|SINE|Alu	-3517	NR_026581	8079	Hs.524214	NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
chr7.727490.-	chr7	727490	727491	-	0	NA	"intron (NM_002735, intron 2 of 10)"	AluSx1|SINE|Alu	-24671	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr2.90482972.+	chr2	90482972	90482973	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365003	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr1.151741995.-	chr1	151741995	151741996	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2864	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr8.6644897.-	chr8	6644897	6644898	-	0	NA	Intergenic	AluY|SINE|Alu	42136	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr22.38166119.-	chr22	38166119	38166120	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	-23878	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr9.137588865.+	chr9	137588865	137588866	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55213	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr13.81676511.-	chr13	81676511	81676512	-	0	NA	Intergenic	SVA_D|Other|Other	761425	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr13.111268309.-	chr13	111268309	111268310	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-378	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr9.139071858.-	chr9	139071858	139071859	-	0	NA	Intergenic	Intergenic	-23146	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr3.73394998.-	chr3	73394998	73394999	-	0	NA	Intergenic	AluY|SINE|Alu	-279074	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr6.167607733.-	chr6	167607733	167607734	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23652	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr7.66064147.+	chr7	66064147	66064148	+	0	NA	Intergenic	AluY|SINE|Alu	-20649	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr10.8150569.-	chr10	8150569	8150570	-	0	NA	Intergenic	AluY|SINE|Alu	-53902	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr19.4150568.-	chr19	4150568	4150569	-	0	NA	Intergenic	AluJb|SINE|Alu	3030	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr8.120878233.+	chr8	120878233	120878234	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7667	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr9.93923736.-	chr9	93923736	93923737	-	0	NA	Intergenic	Intergenic	86322	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	miscRNA
chr1.59041993.-	chr1	59041993	59041994	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1173	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr13.112726520.+	chr13	112726520	112726521	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4607	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr20.62197192.-	chr20	62197192	62197193	-	0	NA	"exon (NM_001037335, exon 9 of 20)"	"exon (NM_001037335, exon 9 of 20)"	-1915	NM_033405	85441	Hs.517180	NM_001037335	ENSG00000130589	HELZ2	PDIP-1|PRIC285	"helicase with zinc finger 2, transcriptional coactivator"	protein-coding
chr7.69745544.-	chr7	69745544	69745545	-	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	-681638	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr2.136403832.-	chr2	136403832	136403833	-	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	19135	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr5.28928023.-	chr5	28928023	28928024	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1046	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr15.74149094.-	chr15	74149094	74149095	-	0	NA	Intergenic	Intergenic	16874	NM_153356	161514	Hs.124512	NM_153356	ENSG00000167139	TBC1D21	MgcRabGAP	"TBC1 domain family, member 21"	protein-coding
chr22.21635802.-	chr22	21635802	21635803	-	0	NA	promoter-TSS (NR_024583)	promoter-TSS (NR_024583)	912	NR_024583	29797	Hs.735161	NR_024583		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin-like 8 pseudogene	pseudo
chr7.23509176.-	chr7	23509176	23509177	-	0	NA	"intron (NM_006547, intron 1 of 14)"	CpG	-819	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
chr15.93458663.-	chr15	93458663	93458664	-	0	NA	"intron (NM_001042572, intron 2 of 12)"	AluY|SINE|Alu	-11034	NR_036136	100422995		NR_036136		MIR3175	-	microRNA 3175	miscRNA
chr5.133831528.+	chr5	133831528	133831529	+	0	NA	Intergenic	AluY|SINE|Alu	-30270	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr22.38530986.+	chr22	38530986	38530987	+	0	NA	"intron (NM_001004426, intron 6 of 15)"	"intron (NM_001004426, intron 6 of 15)"	-24310	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr14.106359734.-	chr14	106359734	106359735	-	0	NA	Intergenic	Intergenic	24104	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr1.169305353.-	chr1	169305353	169305354	-	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	-31833	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr13.79980029.+	chr13	79980029	79980030	+	0	NA	promoter-TSS (NM_022118)	promoter-TSS (NM_022118)	-106	NM_022118	64062	Hs.558528	NM_022118	ENSG00000139746	RBM26	ARRS2|C13orf10|RP11-255E21.1|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
chr1.226350658.+	chr1	226350658	226350659	+	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	23765	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr12.1044025.+	chr12	1044025	1044026	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14838	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr3.174240447.+	chr3	174240447	174240448	+	0	NA	Intergenic	AluY|SINE|Alu	-336664	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr10.133842649.+	chr10	133842649	133842650	+	0	NA	Intergenic	SVA_F|Other|Other	-47214	NM_004052	664	Hs.144873	NM_004052		BNIP3	NIP3	BCL2/adenovirus E1B 19kDa interacting protein 3	protein-coding
chr17.79344055.-	chr17	79344055	79344056	-	0	NA	Intergenic	AluSx|SINE|Alu	-15105	NM_001272086	100130370	Hs.651390	XM_001714096		LOC100130370	-	uncharacterized LOC100130370	protein-coding
chr8.99151373.-	chr8	99151373	99151374	-	0	NA	"intron (NM_001145860, intron 9 of 15)"	AluSx1|SINE|Alu	-21305	NM_015029	10940	Hs.252828	NM_001145860	ENSG00000104356	POP1	-	"processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)"	protein-coding
chr6.12012461.+	chr6	12012461	12012462	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-263	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr7.158240684.-	chr7	158240684	158240685	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-84821	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr6.37137909.+	chr6	37137909	37137910	+	0	NA	promoter-TSS (NM_002648)	promoter-TSS (NM_002648)	-13	NM_002648	5292	Hs.81170	NM_001243186	ENSG00000137193	PIM1	PIM	pim-1 oncogene	protein-coding
chr2.115948298.+	chr2	115948298	115948299	+	0	NA	"intron (NM_001004360, intron 1 of 25)"	HERVIP10F-int|LTR|ERV1	28614	NM_001004360	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr7.16632877.+	chr7	16632877	16632878	+	0	NA	Intergenic	AluJb|SINE|Alu	52565	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr17.61686667.+	chr17	61686667	61686668	+	0	NA	TTS (NM_016360)	TTS (NM_016360)	8436	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
chr1.28969103.-	chr1	28969103	28969104	-	0	NA	"intron (NM_005644, intron 1 of 5)"	"intron (NM_005644, intron 1 of 5)"	-501	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chrX.47334388.+	chrX	47334388	47334389	+	0	NA	"intron (NM_153380, intron 1 of 4)"	AluYk12|SINE|Alu	7957	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr17.15122356.-	chr17	15122356	15122357	-	0	NA	Intergenic	AluY|SINE|Alu	-32657	NR_039884	100616125		NR_039884		MIR4731	-	microRNA 4731	miscRNA
chr21.46995419.-	chr21	46995419	46995420	-	0	NA	Intergenic	Intergenic	33034	NM_194255	6573	Hs.736903	NM_001205206	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	"solute carrier family 19 (folate transporter), member 1"	protein-coding
chr3.122695688.-	chr3	122695688	122695689	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	707	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr16.88384018.+	chr16	88384018	88384019	+	0	NA	Intergenic	MIRc|SINE|MIR	-109861	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr1.24513568.-	chr1	24513568	24513569	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-197	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr15.92290016.-	chr15	92290016	92290017	-	0	NA	Intergenic	AluY|SINE|Alu	106922	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr16.33393297.-	chr16	33393297	33393298	-	0	NA	Intergenic	AluSx1|SINE|Alu	94595	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr1.40260010.-	chr1	40260010	40260011	-	0	NA	Intergenic	AluY|SINE|Alu	5477	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr8.128328714.-	chr8	128328714	128328715	-	0	NA	Intergenic	Intergenic	99143	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr6.41732919.+	chr6	41732919	41732920	+	0	NA	Intergenic	AluSx1|SINE|Alu	14711	NM_006653	10817	Hs.194208	NM_006653	ENSG00000137218	FRS3	FRS2B|FRS2beta|SNT-2|SNT2	fibroblast growth factor receptor substrate 3	protein-coding
chr13.114826222.+	chr13	114826222	114826223	+	0	NA	"intron (NM_007368, intron 2 of 23)"	"intron (NM_007368, intron 2 of 23)"	71873	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr17.4810677.+	chr17	4810677	4810678	+	0	NA	Intergenic	AluY|SINE|Alu	-4308	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	"cholinergic receptor, nicotinic, epsilon (muscle)"	protein-coding
chr12.50621241.+	chr12	50621241	50621242	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4753	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr19.43588114.+	chr19	43588114	43588115	+	0	NA	Intergenic	Intergenic	-1221	NM_031246	5670	Hs.709200	NM_031246	ENSG00000242221	PSG2	CEA|PSBG2|PSG1	pregnancy specific beta-1-glycoprotein 2	protein-coding
chr17.57868951.+	chr17	57868951	57868952	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49676	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr2.62740968.-	chr2	62740968	62740969	-	0	NA	Intergenic	AluY|SINE|Alu	7364	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr6.123144087.-	chr6	123144087	123144088	-	0	NA	Intergenic	AluY|SINE|Alu	-34116	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chrX.128371068.-	chrX	128371068	128371069	-	0	NA	Intergenic	AluSq4|SINE|Alu	-286392	NM_139035	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1"	protein-coding
chr11.2213914.-	chr11	2213914	2213915	-	0	NA	Intergenic	Intergenic	-19621	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr3.164119733.+	chr3	164119733	164119734	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676550	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr22.19953025.+	chr22	19953025	19953026	+	0	NA	"intron (NM_001135161, intron 5 of 5)"	AluSc|SINE|Alu	1749	NR_039918	100616414		NR_039918		MIR4761	-	microRNA 4761	miscRNA
chr1.227982857.+	chr1	227982857	227982858	+	0	NA	Intergenic	Intergenic	-20561	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr16.68158317.-	chr16	68158317	68158318	-	0	NA	"intron (NM_004555, intron 2 of 10)"	"intron (NM_004555, intron 2 of 10)"	-39048	NM_004555	4775	Hs.436585	NM_004555	ENSG00000072736	NFATC3	NFAT4|NFATX	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3"	protein-coding
chr10.133203419.-	chr10	133203419	133203420	-	0	NA	Intergenic	Intergenic	93435	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr1.937283.+	chr1	937283	937284	+	0	NA	Intergenic	CpG-24	-1731	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr19.50033335.-	chr19	50033335	50033336	-	0	NA	"intron (NM_020650, intron 2 of 6)"	AluSx4|SINE|Alu	-2460	NM_020650	57333	Hs.567550	NM_020650	ENSG00000142552	RCN3	RLP49	"reticulocalbin 3, EF-hand calcium binding domain"	protein-coding
chr7.821221.+	chr7	821221	821222	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33973	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr2.233284571.-	chr2	233284571	233284572	-	0	NA	Intergenic	CpG	-13019	NM_031313	251	Hs.333509	NM_031313	ENSG00000163286	ALPPL2	ALPG|ALPPL|GCAP	"alkaline phosphatase, placental-like 2"	protein-coding
chr1.154873976.-	chr1	154873976	154873977	-	0	NA	Intergenic	AluSx3|SINE|Alu	31222	NM_002249	3782	Hs.490765	NM_001204087		KCNN3	KCa2.3|SK3|SKCA3|hSK3	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3"	protein-coding
chr8.144503706.-	chr8	144503706	144503707	-	0	NA	Intergenic	CpG	-8896	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr15.28340374.-	chr15	28340374	28340375	-	0	NA	"intron (NM_000275, intron 1 of 23)"	CpG	-4084	NM_000275	4948	Hs.654411	NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
chr7.2545019.+	chr7	2545019	2545020	+	0	NA	Intergenic	Intergenic	-7144	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr5.25101028.+	chr5	25101028	25101029	+	0	NA	Intergenic	AluSc|SINE|Alu	-260336	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr20.32072347.+	chr20	32072347	32072348	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5581	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr6.170055438.+	chr6	170055438	170055439	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46721	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr9.138065640.+	chr9	138065640	138065641	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7815	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr12.33592843.-	chr12	33592843	33592844	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	89	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr4.166248571.-	chr4	166248571	166248572	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	247	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr4.166248523.+	chr4	166248523	166248524	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-295	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr2.183551408.-	chr2	183551408	183551409	-	0	NA	Intergenic	L1PA5|LINE|L1	29360	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr20.43378970.-	chr20	43378970	43378971	-	0	NA	"exon (NM_022358, exon 2 of 2)"	"exon (NM_022358, exon 2 of 2)"	-4482	NM_022358	60598	Hs.528664	NM_022358		KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	"potassium channel, subfamily K, member 15"	protein-coding
chr9.44792226.-	chr9	44792226	44792227	-	0	NA	Intergenic	AluSq2|SINE|Alu	198010	NR_027421	100132948	Hs.645763	NR_027421	ENSG00000154537	FAM27C	FAM27A3|bA374M1.5	"family with sequence similarity 27, member C"	miscRNA
chr5.132362023.-	chr5	132362023	132362024	-	0	NA	"intron (NM_017665, intron 1 of 3)"	CpG	-217	NM_017665	54819	Hs.29700	NM_017665	ENSG00000155329	ZCCHC10	-	"zinc finger, CCHC domain containing 10"	protein-coding
chr5.2391225.-	chr5	2391225	2391226	-	0	NA	Intergenic	Intergenic	-360544	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr7.63023279.-	chr7	63023279	63023280	-	0	NA	Intergenic	Intergenic	58189	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr9.90885110.-	chr9	90885110	90885111	-	0	NA	Intergenic	AluJb|SINE|Alu	118187	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr19.40696442.+	chr19	40696442	40696443	+	0	NA	Intergenic	AluSx|SINE|Alu	-1209	NM_002446	4294	Hs.466743	NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
chr22.49948701.+	chr22	49948701	49948702	+	0	NA	Intergenic	Intergenic	102489	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr9.138439134.-	chr9	138439134	138439135	-	0	NA	"intron (NM_014582, intron 3 of 6)"	"intron (NM_014582, intron 3 of 6)"	-1149	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr20.34266477.+	chr20	34266477	34266478	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13599	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr18.76189797.-	chr18	76189797	76189798	-	0	NA	Intergenic	CpG	550478	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chr6.169648530.-	chr6	169648530	169648531	-	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	-5607	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr4.92938325.+	chr4	92938325	92938326	+	0	NA	Intergenic	AluY|SINE|Alu	-287225	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr21.11130079.-	chr21	11130079	11130080	-	0	NA	Intergenic	AluSz6|SINE|Alu	31142	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chrX.135850126.-	chrX	135850126	135850127	-	0	NA	"intron (NM_004840, intron 2 of 21)"	CpG	-13377	NM_004840	9459	Hs.522795	NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding
chr11.64120574.-	chr11	64120574	64120575	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6051	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr10.95607666.+	chr10	95607666	95607667	+	0	NA	Intergenic	LOR1b|LTR|ERV1	-46064	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr6.44238510.-	chr6	44238510	44238511	-	0	NA	promoter-TSS (NM_001137560)	promoter-TSS (NM_001137560)	-30	NM_001137560	441151	Hs.632851	NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
chr7.95234882.-	chr7	95234882	95234883	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8957	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr19.18253580.-	chr19	18253580	18253581	-	0	NA	"intron (NM_015016, intron 20 of 26)"	AluJb|SINE|Alu	10408	NR_073517	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr11.46939951.-	chr11	46939951	46939952	-	0	NA	"5' UTR (NM_002334, exon 1 of 38)"	"5' UTR (NM_002334, exon 1 of 38)"	-222	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
chr20.43342005.-	chr20	43342005	43342006	-	0	NA	Intergenic	AluSx|SINE|Alu	1880	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr11.16894089.-	chr11	16894089	16894090	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133941	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chrY.13478076.-	chrY	13478076	13478077	-	0	NA	Intergenic	CpG	-1055313	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chrX.54371373.+	chrX	54371373	54371374	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13065	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr6.35497052.-	chr6	35497052	35497053	-	0	NA	Intergenic	AluSp|SINE|Alu	16405	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
chr20.62863382.+	chr20	62863382	62863383	+	0	NA	"intron (NM_004535, intron 18 of 22)"	"intron (NM_004535, intron 18 of 22)"	-23666	NM_018257	55251	Hs.279562	NM_001104925	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
chr2.25390988.+	chr2	25390988	25390989	+	0	NA	"intron (NM_001035256, intron 1 of 3)"	AluSp|SINE|Alu	571	NM_000939	5443	Hs.1897	NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
chr11.126138399.-	chr11	126138399	126138400	-	0	NA	promoter-TSS (NM_017547)	promoter-TSS (NM_017547)	-478	NM_003139	6734	Hs.368376	NM_001177842	ENSG00000182934	SRPR	DP|Sralpha	signal recognition particle receptor (docking protein)	protein-coding
chr2.70410764.+	chr2	70410764	70410765	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSc8|SINE|Alu	7387	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr16.1845109.+	chr16	1845109	1845110	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-200	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr11.16894100.-	chr11	16894100	16894101	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133952	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr10.4909049.+	chr10	4909049	4909050	+	0	NA	Intergenic	LTR8|LTR|ERV1	40680	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr22.43238126.-	chr22	43238126	43238127	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15282	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr21.31598690.-	chr21	31598690	31598691	-	0	NA	Intergenic	AluSx4|SINE|Alu	10221	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr8.12958027.+	chr8	12958027	12958028	+	0	NA	"exon (NM_182643, exon 9 of 18)"	"exon (NM_182643, exon 9 of 18)"	15726	NM_001164271	10395	Hs.134296	NM_001164271	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	deleted in liver cancer 1	protein-coding
chr14.69463013.+	chr14	69463013	69463014	+	0	NA	Intergenic	AluY|SINE|Alu	16614	NR_073422	161159	Hs.603341	NR_073422		ACTN1-AS1	C14orf84	ACTN1 antisense RNA 1	miscRNA
chr22.51010996.+	chr22	51010996	51010997	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5510	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr3.46792312.+	chr3	46792312	46792313	+	0	NA	Intergenic	CpG	-6067	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr3.38022201.+	chr3	38022201	38022202	+	0	NA	"intron (NM_001008392, intron 7 of 7)"	"intron (NM_001008392, intron 7 of 7)"	11306	NR_029499	407015		NR_029499		MIR26A1	MIR26A|MIRN26A1	microRNA 26a-1	miscRNA
chr1.219945219.-	chr1	219945219	219945220	-	0	NA	Intergenic	AluY|SINE|Alu	101400	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	"RNA, U5F small nuclear 1"	snRNA
chr9.14830612.+	chr9	14830612	14830613	+	0	NA	"intron (NM_144966, intron 11 of 37)"	"intron (NM_144966, intron 11 of 37)"	-51081	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr10.19682678.-	chr10	19682678	19682679	-	0	NA	Intergenic	AluY|SINE|Alu	422694	NM_032812	84898	Hs.658134	NM_032812	ENSG00000120594	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
chr4.513551.+	chr4	513551	513552	+	0	NA	"intron (NM_001127178, intron 6 of 12)"	"intron (NM_001127178, intron 6 of 12)"	20562	NM_001127178	54872	Hs.7099	NM_001127178	ENSG00000174227	PIGG	GPI7|LAS21|PRO4405|RLGS1930	"phosphatidylinositol glycan anchor biosynthesis, class G"	protein-coding
chr2.10733457.+	chr2	10733457	10733458	+	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	96656	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr19.58250074.+	chr19	58250074	58250075	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8090	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr8.145770738.-	chr8	145770738	145770739	-	0	NA	"exon (NM_025251, exon 7 of 13)"	"exon (NM_025251, exon 7 of 13)"	16280	NM_001001795	414919	Hs.105685	NM_001001795		C8orf82	-	chromosome 8 open reading frame 82	protein-coding
chr7.2720525.+	chr7	2720525	2720526	+	0	NA	"intron (NM_133463, intron 1 of 6)"	"intron (NM_133463, intron 1 of 6)"	1362	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr16.53537428.-	chr16	53537428	53537429	-	0	NA	promoter-TSS (NM_001012398)	promoter-TSS (NM_001012398)	258	NM_022476	64400	Hs.380897	NM_001012398	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
chr7.102327466.-	chr7	102327466	102327467	-	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	15290	NM_032959	246721	Hs.732239	NM_032959	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	polymerase (RNA) II (DNA directed) polypeptide J2	protein-coding
chr17.18575653.+	chr17	18575653	18575654	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	841	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr20.61021232.-	chr20	61021232	61021233	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18603	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr18.57476952.+	chr18	57476952	57476953	+	0	NA	Intergenic	AluSz|SINE|Alu	-90240	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
chr2.159693877.+	chr2	159693877	159693878	+	0	NA	Intergenic	AluSp|SINE|Alu	42048	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr7.5244749.+	chr7	5244749	5244750	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	-9151	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr4.54204878.+	chr4	54204878	54204879	+	0	NA	"intron (NM_152540, intron 2 of 8)"	AluYa5|SINE|Alu	27364	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr5.172640595.+	chr5	172640595	172640596	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21720	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr19.33557656.+	chr19	33557656	33557657	+	0	NA	Intergenic	Intergenic	-1832	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr8.123636968.-	chr8	123636968	123636969	-	0	NA	Intergenic	AluSx|SINE|Alu	156933	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr21.44478123.-	chr21	44478123	44478124	-	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	-17917	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr7.532131.+	chr7	532131	532132	+	0	NA	Intergenic	Intergenic	27350	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr11.5623401.-	chr11	5623401	5623402	-	0	NA	"intron (NM_001198645, intron 1 of 5)"	AluY|SINE|Alu	-5536	NM_001003818	117854	Hs.729048	NM_001003818	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
chr3.50701743.+	chr3	50701743	50701744	+	0	NA	Intergenic	AluY|SINE|Alu	-10768	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr17.18178999.+	chr17	18178999	18179000	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14575	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr2.128430592.-	chr2	128430592	128430593	-	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	-2172	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr3.50701714.-	chr3	50701714	50701715	-	0	NA	Intergenic	AluY|SINE|Alu	10797	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr9.12352800.-	chr9	12352800	12352801	-	0	NA	Intergenic	AluY|SINE|Alu	340586	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr10.131265852.+	chr10	131265852	131265853	+	0	NA	"intron (NM_002412, intron 1 of 4)"	"intron (NM_002412, intron 1 of 4)"	398	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
chr22.43175063.+	chr22	43175063	43175064	+	0	NA	Intergenic	AluY|SINE|Alu	-58187	NM_017436	53947	Hs.105956	NM_017436		A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	"alpha 1,4-galactosyltransferase"	protein-coding
chr5.630154.-	chr5	630154	630155	-	0	NA	"intron (NM_018140, intron 4 of 11)"	"intron (NM_018140, intron 4 of 11)"	-17749	NM_018140	55722	Hs.591741	NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72kDa	protein-coding
chr17.79034732.-	chr17	79034732	79034733	-	0	NA	"intron (NM_017451, intron 3 of 14)"	AluSx|SINE|Alu	-25785	NM_006340	10458	Hs.128316	NM_001144888	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1-associated protein 2	protein-coding
chr3.29051412.+	chr3	29051412	29051413	+	0	NA	Intergenic	AluSc8|SINE|Alu	-271391	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr12.66768081.+	chr12	66768081	66768082	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71746	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr7.63023287.+	chr7	63023287	63023288	+	0	NA	Intergenic	Intergenic	-58181	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr18.59919500.-	chr18	59919500	59919501	-	0	NA	"intron (NM_020854, intron 11 of 28)"	AluSc|SINE|Alu	-64976	NM_020854	57614	Hs.465323	NM_020854	ENSG00000134444	KIAA1468	HsT3308|HsT885	KIAA1468	protein-coding
chr9.70648641.-	chr9	70648641	70648642	-	0	NA	Intergenic	TAR1|Satellite|telo	158464	NM_201453	445571	Hs.645337	NM_201453		CBWD3	bA561O23.1	COBW domain containing 3	protein-coding
chr3.9398179.-	chr3	9398179	9398180	-	0	NA	Intergenic	AluY|SINE|Alu	6538	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr2.120775591.-	chr2	120775591	120775592	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4806	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr1.65547670.-	chr1	65547670	65547671	-	0	NA	Intergenic	AluY|SINE|Alu	23479	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr2.42801304.-	chr2	42801304	42801305	-	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	-5633	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr5.65936237.+	chr5	65936237	65936238	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44061	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr7.5257633.-	chr7	5257633	5257634	-	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	-3733	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr5.178657980.-	chr5	178657980	178657981	-	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	-114451	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr9.35846374.-	chr9	35846374	35846375	-	0	NA	"exon (NM_001042590, exon 8 of 13)"	"exon (NM_001042590, exon 8 of 13)"	13897	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr1.114299516.-	chr1	114299516	114299517	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2261	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr10.97569093.+	chr10	97569093	97569094	+	0	NA	"intron (NR_038444, intron 4 of 5)"	SVA_B|Other|Other	53420	NM_001164179	953	Hs.722260	NM_001098175	ENSG00000138185	ENTPD1	ATPDase|CD39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
chr22.18892165.+	chr22	18892165	18892166	+	0	NA	Intergenic	Intergenic	-1571	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr5.87348572.+	chr5	87348572	87348573	+	0	NA	Intergenic	L1PA2|LINE|L1	216093	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr1.26778205.+	chr1	26778205	26778206	+	0	NA	"intron (NM_205861, intron 6 of 8)"	AluY|SINE|Alu	19432	NM_205861	79947	Hs.369385	NM_001243564	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase	protein-coding
chr10.38249299.-	chr10	38249299	38249300	-	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	-16154	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chr15.64013638.+	chr15	64013638	64013639	+	0	NA	"intron (NM_003922, intron 19 of 77)"	AluSx|SINE|Alu	112509	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
chr7.36192830.-	chr7	36192830	36192831	-	0	NA	promoter-TSS (NM_030636)	promoter-TSS (NM_030636)	6	NM_030636	80820	Hs.670591	NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chr5.132299651.+	chr5	132299651	132299652	+	0	NA	promoter-TSS (NM_014423)	promoter-TSS (NM_014423)	-297	NM_014423	27125	Hs.664840	NM_014423	ENSG00000072364	AFF4	AF5Q31|MCEF	"AF4/FMR2 family, member 4"	protein-coding
chr4.1358089.-	chr4	1358089	1358090	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16985	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr5.675434.-	chr5	675434	675435	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18076	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr7.5355961.-	chr7	5355961	5355962	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33400	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr6.2221753.-	chr6	2221753	2221754	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24115	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr12.133115262.+	chr12	133115262	133115263	+	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	48105	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr14.102050421.-	chr14	102050421	102050422	-	0	NA	Intergenic	Intergenic	-22733	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr5.141451805.+	chr5	141451805	141451806	+	0	NA	Intergenic	AluSq|SINE|Alu	-36519	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr7.158284934.+	chr7	158284934	158284935	+	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	40571	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr10.134216496.-	chr10	134216496	134216497	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5794	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr2.10205126.+	chr2	10205126	10205127	+	0	NA	"intron (NM_001037160, intron 2 of 2)"	AluSz|SINE|Alu	15412	NM_001037160	192668	Hs.720471	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
chr17.22012637.+	chr17	22012637	22012638	+	0	NA	Intergenic	Intergenic	-9800	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr20.14910684.+	chr20	14910684	14910685	+	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	-523	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr12.133395768.-	chr12	133395768	133395769	-	0	NA	"intron (NM_001172557, intron 2 of 15)"	"intron (NM_001172557, intron 2 of 15)"	-9520	NM_005895	2802	Hs.507333	NM_001172557	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
chr17.37009819.+	chr17	37009819	37009820	+	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	234	NM_000978	9349	Hs.406300	NM_000978		RPL23	L23|rpL17	ribosomal protein L23	protein-coding
chr19.46915394.+	chr19	46915394	46915395	+	0	NA	"exon (NM_032040, exon 1 of 1)"	"exon (NM_032040, exon 1 of 1)"	1525	NM_032040	83987	Hs.744359	NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
chr7.130728495.-	chr7	130728495	130728496	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	-63294	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr15.20494041.+	chr15	20494041	20494042	+	0	NA	"intron (NR_038836, intron 4 of 5)"	AluSx|SINE|Alu	6044	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr9.77401532.+	chr9	77401532	77401533	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100731	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chrX.84509663.-	chrX	84509663	84509664	-	0	NA	"intron (NM_021998, intron 3 of 8)"	AluY|SINE|Alu	-10666	NM_021998	7552	Hs.326801	NM_021998	ENSG00000147180	ZNF711	CMPX1|MRX97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1	zinc finger protein 711	protein-coding
chrX.13062344.+	chrX	13062344	13062345	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	573	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr15.25459181.+	chr15	25459181	25459182	+	0	NA	TTS (NR_003495)	TTS (NR_003495)	375	NR_003495	100036563		NR_003495	ENSG00000200398	SNORD115-24	HBII-52-24	"small nucleolar RNA, C/D box 115-24"	snoRNA
chr2.158052723.+	chr2	158052723	158052724	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61617	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr20.62479291.+	chr20	62479291	62479292	+	0	NA	Intergenic	Intergenic	-13275	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr6.80035296.-	chr6	80035296	80035297	-	0	NA	Intergenic	L1PA4|LINE|L1	90841	NM_004242	9324	Hs.77558	NM_001201362	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chr3.139481307.-	chr3	139481307	139481308	-	0	NA	Intergenic	Intergenic	84422	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr21.47485671.-	chr21	47485671	47485672	-	0	NA	Intergenic	Intergenic	32362	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr9.77401559.-	chr9	77401559	77401560	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100704	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr19.45678538.-	chr19	45678538	45678539	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-2963	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr19.39915271.-	chr19	39915271	39915272	-	0	NA	"exon (NM_022835, exon 19 of 19)"	"exon (NM_022835, exon 19 of 19)"	-11347	NM_001020	6217	Hs.397609	NM_001020	ENSG00000105193	RPS16	S16	ribosomal protein S16	protein-coding
chr7.157234956.-	chr7	157234956	157234957	-	0	NA	Intergenic	CpG	-105245	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr7.1798939.+	chr7	1798939	1798940	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50141	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr14.24835901.-	chr14	24835901	24835902	-	0	NA	promoter-TSS (NM_001198967)	promoter-TSS (NM_001198967)	244	NM_001198967	4776	Hs.77810	NM_001136022	ENSG00000100968	NFATC4	NF-ATc4|NFAT3	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4"	protein-coding
chr10.122739208.+	chr10	122739208	122739209	+	0	NA	"intron (NR_049879, intron 4 of 4)"	CpG	-128517	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	miscRNA
chr16.194666.-	chr16	194666	194667	-	0	NA	Intergenic	AluSx3|SINE|Alu	5969	NM_001243249	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr6.55775406.+	chr6	55775406	55775407	+	0	NA	Intergenic	SVA_D|Other|Other	-35031	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr22.46522753.+	chr22	46522753	46522754	+	0	NA	Intergenic	Intergenic	13187	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr11.16894137.-	chr11	16894137	16894138	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133989	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr12.62886291.+	chr12	62886291	62886292	+	0	NA	"intron (NM_015026, intron 2 of 34)"	AluYb8|SINE|Alu	25694	NM_015026	23041	Hs.389378	NM_015026	ENSG00000061987	MON2	-	MON2 homolog (S. cerevisiae)	protein-coding
chr22.51142895.+	chr22	51142895	51142896	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29825	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr17.4488404.-	chr17	4488404	4488405	-	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	-570	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr22.51142883.+	chr22	51142883	51142884	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29813	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr5.176075319.-	chr5	176075319	176075320	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-931	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr17.18575634.-	chr17	18575634	18575635	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-860	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr19.49529854.+	chr19	49529854	49529855	+	0	NA	Intergenic	AluSz|SINE|Alu	-2222	NM_000737	1082	Hs.743279	NM_000737	ENSG00000104827	CGB	CGB3|CGB5|CGB7|CGB8|hCGB	"chorionic gonadotropin, beta polypeptide"	protein-coding
chr9.113201961.-	chr9	113201961	113201962	-	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	101836	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chr3.97676084.-	chr3	97676084	97676085	-	0	NA	"intron (NM_001261829, intron 4 of 9)"	AluSx3|SINE|Alu	-15211	NM_001261829	84864	Hs.742206	NM_001042533		MINA	MDIG|MINA53|NO52|ROX	MYC induced nuclear antigen	protein-coding
chr18.74140094.+	chr18	74140094	74140095	+	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	67052	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr3.102973965.+	chr3	102973965	102973966	+	0	NA	Intergenic	SVA_D|Other|Other	820106	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr1.5762921.+	chr1	5762921	5762922	+	0	NA	Intergenic	AluSp|SINE|Alu	138790	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	miscRNA
chr17.2266790.+	chr17	2266790	2266791	+	0	NA	"exon (NM_014853, exon 7 of 24)"	"exon (NM_014853, exon 7 of 24)"	25982	NM_001098509	9905	Hs.513861	NM_001098509	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
chr17.4708670.-	chr17	4708670	4708671	-	0	NA	Intergenic	AluSp|SINE|Alu	1726	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr13.19683422.+	chr13	19683422	19683423	+	0	NA	Intergenic	L1PA2|LINE|L1	-33700	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr5.128196993.+	chr5	128196993	128196994	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104217	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr17.37783504.+	chr17	37783504	37783505	+	0	NA	"5' UTR (NM_032192, exon 1 of 7)"	"5' UTR (NM_032192, exon 1 of 7)"	327	NM_032192	84152	Hs.286192	NM_001242464	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	"protein phosphatase 1, regulatory (inhibitor) subunit 1B"	protein-coding
chr8.146024427.-	chr8	146024427	146024428	-	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	-166	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr12.121155391.-	chr12	121155391	121155392	-	0	NA	"intron (NM_001080533, intron 4 of 4)"	AluSx3|SINE|Alu	5605	NR_039849	100616329		NR_039849	ENSG00000265455	MIR4700	-	microRNA 4700	miscRNA
chr22.51066701.+	chr22	51066701	51066702	+	0	NA	promoter-TSS (NM_000487)	promoter-TSS (NM_000487)	-100	NM_001085427	410	Hs.731715	NM_000487		ARSA	MLD	arylsulfatase A	protein-coding
chr1.156405471.-	chr1	156405471	156405472	-	0	NA	Intergenic	CpG	6287	NM_006365	10485	Hs.380027	NM_006365	ENSG00000125462	C1orf61	CROC4	chromosome 1 open reading frame 61	protein-coding
chr21.43525945.+	chr21	43525945	43525946	+	0	NA	"intron (NM_001199528, intron 9 of 22)"	MLT1C|LTR|ERVL-MaLR	2699	NR_027243	150147	Hs.558646	NM_152507	ENSG00000184385	C21orf128	-	chromosome 21 open reading frame 128	miscRNA
chr21.36164325.+	chr21	36164325	36164326	+	0	NA	"3' UTR (NM_001754, exon 9 of 9)"	"3' UTR (NM_001754, exon 9 of 9)"	46203	NR_038885	100506385	Hs.120179	NR_038885	ENSG00000234380	LOC100506385	-	uncharacterized LOC100506385	miscRNA
chr6.16831741.-	chr6	16831741	16831742	-	0	NA	Intergenic	AluY|SINE|Alu	70020	NM_000332	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
chr17.74632752.+	chr17	74632752	74632753	+	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	7142	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr19.2039844.+	chr19	2039844	2039845	+	0	NA	"exon (NM_199054, exon 14 of 14)"	"exon (NM_199054, exon 14 of 14)"	11399	NM_199054	2872	Hs.515032	NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAP kinase interacting serine/threonine kinase 2	protein-coding
chr1.51984044.-	chr1	51984044	51984045	-	0	NA	"intron (NM_001981, intron 1 of 24)"	"intron (NM_001981, intron 1 of 24)"	-951	NM_001981	2060	Hs.83722	NM_001159969	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
chr7.36845304.-	chr7	36845304	36845305	-	0	NA	Intergenic	AluJb|SINE|Alu	81150	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr14.76577636.+	chr14	76577636	76577637	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40623	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr5.137550378.-	chr5	137550378	137550379	-	0	NA	Intergenic	AluY|SINE|Alu	1346	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr13.51885854.-	chr13	51885854	51885855	-	0	NA	Intergenic	AluSx|SINE|Alu	29314	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr22.37684423.+	chr22	37684423	37684424	+	0	NA	"intron (NM_013385, intron 1 of 12)"	AluSc|SINE|Alu	5928	NM_013385	27128	Hs.170944	NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4	cytohesin 4	protein-coding
chr12.110955966.+	chr12	110955966	110955967	+	0	NA	"intron (NM_152442, intron 6 of 11)"	AluY|SINE|Alu	15961	NM_152442	144715	Hs.97794	NM_152442	ENSG00000151164	RAD9B	-	RAD9 homolog B (S. pombe)	protein-coding
chr1.37546494.+	chr1	37546494	37546495	+	0	NA	Intergenic	SVA_D|Other|Other	-46650	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr3.121553737.-	chr3	121553737	121553738	-	0	NA	promoter-TSS (NM_018456)	promoter-TSS (NM_018456)	-189	NM_001023570	9657	Hs.604110	NM_001023570	ENSG00000173226	IQCB1	NPHP5|PIQ|SLSN5	IQ motif containing B1	protein-coding
chr2.242447242.+	chr2	242447242	242447243	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	533	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr12.8057281.-	chr12	8057281	8057282	-	0	NA	Intergenic	AluSp|SINE|Alu	-31611	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr1.2721533.+	chr1	2721533	2721534	+	0	NA	Intergenic	Intergenic	-15303	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr8.143373445.-	chr8	143373445	143373446	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93728	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr3.20070884.+	chr3	20070884	20070885	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10640	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr7.7824270.-	chr7	7824270	7824271	-	0	NA	"intron (NR_034084, intron 2 of 3)"	AluY|SINE|Alu	66032	NM_002947	6119	Hs.487540	NM_002947		RPA3	REPA3	"replication protein A3, 14kDa"	protein-coding
chr18.31802667.-	chr18	31802667	31802668	-	0	NA	promoter-TSS (NM_001198547)	promoter-TSS (NM_001198547)	233	NR_036752	8715	Hs.514795	NM_001198546	ENSG00000101746	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
chr16.30969082.-	chr16	30969082	30969083	-	0	NA	"5' UTR (NM_014712, exon 1 of 19)"	"5' UTR (NM_014712, exon 1 of 19)"	-467	NM_014712	9739	Hs.297483	NM_014712	ENSG00000099381	SETD1A	KMT2F|Set1|Set1A	SET domain containing 1A	protein-coding
chr16.28435255.+	chr16	28435255	28435256	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2520	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr5.37295978.-	chr5	37295978	37295979	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46448	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr6.33811453.-	chr6	33811453	33811454	-	0	NA	Intergenic	LTR33|LTR|ERVL	39660	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr19.10570992.-	chr19	10570992	10570993	-	0	NA	"intron (NM_006202, intron 5 of 9)"	AluSx|SINE|Alu	-7359	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chrX.21676562.-	chrX	21676562	21676563	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	114	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr11.128626867.-	chr11	128626867	128626868	-	0	NA	"intron (NM_001167681, intron 2 of 9)"	AluJb|SINE|Alu	60949	NR_038908	100507392	Hs.657715	NR_038908	ENSG00000254703	FLI1-AS1	-	FLI1 antisense RNA 1	miscRNA
chr9.131013021.-	chr9	131013021	131013022	-	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	5712	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chrX.54371344.+	chrX	54371344	54371345	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13094	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr1.10727887.-	chr1	10727887	10727888	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128846	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr1.199643479.-	chr1	199643479	199643480	-	0	NA	Intergenic	AluY|SINE|Alu	353251	NM_003822	2494	Hs.33446	NM_001276464	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	"nuclear receptor subfamily 5, group A, member 2"	protein-coding
chr7.139477534.+	chr7	139477534	139477535	+	0	NA	promoter-TSS (NM_001130966)	promoter-TSS (NM_001130966)	159	NM_022740	28996	Hs.731417	NM_001113239	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
chr2.122878841.+	chr2	122878841	122878842	+	0	NA	Intergenic	AluY|SINE|Alu	365720	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr9.104248367.+	chr9	104248367	104248368	+	0	NA	"intron (NM_032342, intron 1 of 1)"	CpG	1108	NM_032342	84302	Hs.655738	NM_032342		TMEM246	C9orf125	transmembrane protein 246	protein-coding
chr19.589016.-	chr19	589016	589017	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	877	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr7.66607899.+	chr7	66607899	66607900	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28515	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr19.2400854.+	chr19	2400854	2400855	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11070	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr22.49428546.-	chr22	49428546	49428547	-	0	NA	Intergenic	Intergenic	-165964	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr20.634065.-	chr20	634065	634066	-	0	NA	promoter-TSS (NM_080725)	promoter-TSS (NM_080725)	51	NM_080725	140809	Hs.516830	NM_080725	ENSG00000172070	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
chr12.30327147.+	chr12	30327147	30327148	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389455	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr6.167370788.+	chr6	167370788	167370789	+	0	NA	promoter-TSS (NM_003730)	promoter-TSS (NM_003730)	-711	NM_003730	8635	Hs.529989	NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
chr3.122695617.-	chr3	122695617	122695618	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	636	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr20.13660603.-	chr20	13660603	13660604	-	0	NA	Intergenic	AluY|SINE|Alu	41020	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr1.76250938.+	chr1	76250938	76250939	+	0	NA	promoter-TSS (NM_004582)	promoter-TSS (NM_004582)	-941	NM_004582	5876	Hs.78948	NM_004582	ENSG00000137955	RABGGTB	GGTB	"Rab geranylgeranyltransferase, beta subunit"	protein-coding
chr21.32687845.-	chr21	32687845	32687846	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluSx|SINE|Alu	-243445	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr14.80915462.-	chr14	80915462	80915463	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218065	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr3.122695703.-	chr3	122695703	122695704	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	722	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr20.46329380.+	chr20	46329380	46329381	+	0	NA	"intron (NM_018837, intron 4 of 20)"	AluSx1|SINE|Alu	85428	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr19.47364558.+	chr19	47364558	47364559	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-10355	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr15.91370861.+	chr15	91370861	91370862	+	0	NA	Intergenic	AluSz|SINE|Alu	-41024	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr15.31566363.-	chr15	31566363	31566364	-	0	NA	Intergenic	AluY|SINE|Alu	43313	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chr19.35418166.-	chr19	35418166	35418167	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-359	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr11.9243391.+	chr11	9243391	9243392	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43482	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr18.56561548.-	chr18	56561548	56561549	-	0	NA	"intron (NM_018181, intron 3 of 10)"	AluSz|SINE|Alu	-31487	NM_018181	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
chr2.230579304.-	chr2	230579304	230579305	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	18	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr17.36259972.+	chr17	36259972	36259973	+	0	NA	Intergenic	AluYc|SINE|Alu	-15609	NR_024178	284100	Hs.434159	NM_001129906	ENSG00000267671	LOC284100	-	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene"	pseudo
chr20.56285093.+	chr20	56285093	56285094	+	0	NA	promoter-TSS (NM_020182)	promoter-TSS (NM_020182)	-62	NM_020182	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	"prostate transmembrane protein, androgen induced 1"	protein-coding
chr6.158438928.-	chr6	158438928	158438929	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-848	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr19.47364614.+	chr19	47364614	47364615	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10411	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr8.30590281.+	chr8	30590281	30590282	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4795	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr6.41395533.+	chr6	41395533	41395534	+	0	NA	Intergenic	CpG	92005	NM_001199510	9436	Hs.194721	NM_001199509	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
chr5.78890173.-	chr5	78890173	78890174	-	0	NA	Intergenic	AluY|SINE|Alu	18070	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr11.70963213.-	chr11	70963213	70963214	-	0	NA	Intergenic	CpG	27405	NM_012309	22941	Hs.268726	NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
chr1.227982933.+	chr1	227982933	227982934	+	0	NA	Intergenic	Intergenic	-20485	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr22.39040970.+	chr22	39040970	39040971	+	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	11664	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr8.26532452.-	chr8	26532452	26532453	-	0	NA	Intergenic	AluSp|SINE|Alu	-96531	NM_001244604	1808	Hs.593187	NM_001197293	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
chr6.141000377.+	chr6	141000377	141000378	+	0	NA	Intergenic	AluY|SINE|Alu	-4574	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr1.150745363.+	chr1	150745363	150745364	+	0	NA	Intergenic	AluY|SINE|Alu	-6930	NM_001199739	1520	Hs.181301	NM_001199739	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
chr6.170548022.+	chr6	170548022	170548023	+	0	NA	Intergenic	Intergenic	23635	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr5.22207048.+	chr5	22207048	22207049	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64587	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr2.240371805.+	chr2	240371805	240371806	+	0	NA	Intergenic	SVA_D|Other|Other	-49162	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr22.46326774.+	chr22	46326774	46326775	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46234	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr12.121338265.+	chr12	121338265	121338266	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3890	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr19.13264090.-	chr19	13264090	13264091	-	0	NA	"exon (NM_004907, exon 2 of 2)"	"exon (NM_004907, exon 2 of 2)"	-2808	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
chr2.55935738.+	chr2	55935738	55935739	+	0	NA	Intergenic	AluYf4|SINE|Alu	-14693	NM_033109	87178	Hs.388733	NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
chr16.33293945.+	chr16	33293945	33293946	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4757	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr11.33110448.+	chr11	33110448	33110449	+	0	NA	"intron (NM_001326, intron 17 of 20)"	AluJb|SINE|Alu	12752	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr15.41674352.+	chr15	41674352	41674353	+	0	NA	Intergenic	SVA_F|Other|Other	20306	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr17.22012676.-	chr17	22012676	22012677	-	0	NA	Intergenic	Intergenic	9761	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr15.40728549.+	chr15	40728549	40728550	+	0	NA	Intergenic	Intergenic	-4862	NM_014952	22893	Hs.22109	NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
chr2.229496725.+	chr2	229496725	229496726	+	0	NA	Intergenic	AluYc|SINE|Alu	-450364	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr5.176428766.-	chr5	176428766	176428767	-	0	NA	"intron (NM_001199298, intron 1 of 14)"	AluY|SINE|Alu	-4677	NM_016290	51720	Hs.232721	NM_001199297	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
chr13.67135415.+	chr13	67135415	67135416	+	0	NA	"intron (NM_203487, intron 4 of 4)"	LTR12C|LTR|ERV1	-263886	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chrX.113575433.+	chrX	113575433	113575434	+	0	NA	Intergenic	AluJb|SINE|Alu	-243118	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr19.21728135.+	chr19	21728135	21728136	+	0	NA	Intergenic	AluYc|SINE|Alu	39698	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr9.90885007.+	chr9	90885007	90885008	+	0	NA	Intergenic	AluY|SINE|Alu	-118290	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr5.693676.+	chr5	693676	693677	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-166	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr22.49701127.-	chr22	49701127	49701128	-	0	NA	Intergenic	Intergenic	-350063	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr10.12405235.+	chr10	12405235	12405236	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSz|SINE|Alu	13652	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr8.117886977.-	chr8	117886977	117886978	-	0	NA	promoter-TSS (NR_037404)	promoter-TSS (NR_037404)	-62	NR_037404	100500914		NR_037404	ENSG00000264875	MIR3610	-	microRNA 3610	miscRNA
chr2.42801409.-	chr2	42801409	42801410	-	0	NA	"intron (NM_020744, intron 2 of 13)"	AluSp|SINE|Alu	-5738	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr19.19594701.-	chr19	19594701	19594702	-	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	-31768	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr3.127245591.+	chr3	127245591	127245592	+	0	NA	Intergenic	L2a|LINE|L2	64011	NM_001136053	131601	Hs.6418	NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	"transmembrane protein, adipocyte asscociated 1"	protein-coding
chr12.34492654.+	chr12	34492654	34492655	+	0	NA	Intergenic	GSATII|Satellite|centr	317438	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.19625407.-	chr19	19625407	19625408	-	0	NA	"3' UTR (NM_032037, exon 1 of 1)"	"3' UTR (NM_032037, exon 1 of 1)"	-1062	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr6.45365108.-	chr6	45365108	45365109	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19320	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr3.150481038.+	chr3	150481038	150481039	+	0	NA	"5' UTR (NM_005067, exon 1 of 2)"	"5' UTR (NM_005067, exon 1 of 2)"	225	NM_005067	6478	Hs.692394	NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
chr17.37009799.-	chr17	37009799	37009800	-	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	-254	NM_000978	9349	Hs.406300	NM_000978		RPL23	L23|rpL17	ribosomal protein L23	protein-coding
chr4.655960.-	chr4	655960	655961	-	0	NA	"exon (NM_001145291, exon 13 of 22)"	"exon (NM_001145291, exon 13 of 22)"	-8994	NM_001145292	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr1.110881139.-	chr1	110881139	110881140	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-654	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr1.227982964.+	chr1	227982964	227982965	+	0	NA	Intergenic	Intergenic	-20454	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr3.172180121.-	chr3	172180121	172180122	-	0	NA	Intergenic	AluY|SINE|Alu	13875	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr21.11107092.+	chr21	11107092	11107093	+	0	NA	Intergenic	CpG	-8155	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr14.23262377.-	chr14	23262377	23262378	-	0	NA	"intron (NM_001126106, intron 3 of 10)"	AluY|SINE|Alu	-22724	NR_040448	9056	Hs.732349	NM_001126105	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	"solute carrier family 7 (amino acid transporter light chain, y+L system), member 7"	protein-coding
chr9.86597317.+	chr9	86597317	86597318	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1680	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr16.74363441.-	chr16	74363441	74363442	-	0	NA	Intergenic	Intergenic	-32768	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 7"	protein-coding
chr1.2498979.+	chr1	2498979	2498980	+	0	NA	Intergenic	Intergenic	-10529	NR_037844	100133445	Hs.602652	NR_037844		LOC100133445	-	uncharacterized LOC100133445	miscRNA
chr9.105365800.+	chr9	105365800	105365801	+	0	NA	Intergenic	SVA_B|Other|Other	-391793	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr11.119091830.+	chr11	119091830	119091831	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14844	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr2.65454908.+	chr2	65454908	65454909	+	0	NA	promoter-TSS (NM_005722)	promoter-TSS (NM_005722)	79	NM_001005386	10097	Hs.643727	NM_001005386	ENSG00000138071	ACTR2	ARP2	ARP2 actin-related protein 2 homolog (yeast)	protein-coding
chr7.6545748.+	chr7	6545748	6545749	+	0	NA	"intron (NM_001145118, intron 13 of 21)"	"intron (NM_001145118, intron 13 of 21)"	-21899	NM_006854	11014	Hs.654552	NM_001100603	ENSG00000136240	KDELR2	ELP-1|ERD2.2	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding
chr13.78493295.-	chr13	78493295	78493296	-	0	NA	promoter-TSS (NM_003991)	promoter-TSS (NM_003991)	329	NM_001122659	1910	Hs.82002	NM_000115	ENSG00000136160	EDNRB	ABCDS|ET-B|ET-BR|ETB|ETBR|ETRB|HSCR|HSCR2|WS4A	endothelin receptor type B	protein-coding
chr5.103114741.-	chr5	103114741	103114742	-	0	NA	Intergenic	LTR12D|LTR|ERV1	216251	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr1.160239919.-	chr1	160239919	160239920	-	0	NA	Intergenic	AluJo|SINE|Alu	7569	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr12.112161118.+	chr12	112161118	112161119	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37261	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr1.205653474.+	chr1	205653474	205653475	+	0	NA	Intergenic	AluY|SINE|Alu	-3844	NM_033102	85414	Hs.278695	NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	"solute carrier family 45, member 3"	protein-coding
chr5.12186590.+	chr5	12186590	12186591	+	0	NA	Intergenic	AluYa5|SINE|Alu	-282480	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	"catenin (cadherin-associated protein), delta 2"	protein-coding
chr9.16766061.+	chr9	16766061	16766062	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	104725	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr14.22016190.+	chr14	22016190	22016191	+	0	NA	Intergenic	AluY|SINE|Alu	-10853	NM_005407	6297	Hs.743336	NM_005407	ENSG00000165821	SALL2	HSAL2|Sal-2|ZNF795|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding
chr8.14882351.+	chr8	14882351	14882352	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171332	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr19.46156164.-	chr19	46156164	46156165	-	0	NA	Intergenic	AluY|SINE|Alu	7389	NM_001193268	24139	Hs.24178	NM_001193268	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	echinoderm microtubule associated protein like 2	protein-coding
chrX.152916368.-	chrX	152916368	152916369	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8471	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr20.58146908.+	chr20	58146908	58146909	+	0	NA	Intergenic	Intergenic	-5656	NM_001199505	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr17.810077.-	chr17	810077	810078	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42726	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr2.115328231.+	chr2	115328231	115328232	+	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	109051	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr7.21370278.+	chr7	21370278	21370279	+	0	NA	Intergenic	MER52D|LTR|ERV1	-97411	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr10.72977286.-	chr10	72977286	72977287	-	0	NA	"non-coding (NR_038453, exon 2 of 2)"	"non-coding (NR_038453, exon 2 of 2)"	-699	NR_038453	728978	Hs.646725	NR_038453		UNC5B-AS1	-	UNC5B antisense RNA 1	miscRNA
chr18.54318622.-	chr18	54318622	54318623	-	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-6	NM_052834	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr8.609261.+	chr8	609261	609262	+	0	NA	Intergenic	Intergenic	71965	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr16.1759197.+	chr16	1759197	1759198	+	0	NA	"intron (NM_015133, intron 1 of 31)"	"intron (NM_015133, intron 1 of 31)"	2976	NM_015133	23162	Hs.207763	NM_001040439	ENSG00000138834	MAPK8IP3	JIP3|JSAP1|SYD2|syd	mitogen-activated protein kinase 8 interacting protein 3	protein-coding
chrX.1379084.+	chrX	1379084	1379085	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8609	NM_172249	1438	Hs.520937	NM_001161529	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	"colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)"	protein-coding
chr9.138437755.+	chr9	138437755	138437756	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-230	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr12.96314743.+	chr12	96314743	96314744	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21685	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr1.240947667.-	chr1	240947667	240947668	-	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	172205	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr20.5018157.+	chr20	5018157	5018158	+	0	NA	Intergenic	AluSx|SINE|Alu	-27218	NM_203327	9962	Hs.516866	NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	"solute carrier family 23 (nucleobase transporters), member 2"	protein-coding
chr17.45867226.-	chr17	45867226	45867227	-	0	NA	Intergenic	CpG	-31921	NM_145798	114881	Hs.463320	NM_145798	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
chr9.135406980.-	chr9	135406980	135406981	-	0	NA	"intron (NM_207417, intron 4 of 6)"	"intron (NM_207417, intron 4 of 6)"	51013	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH-like homeobox 1	protein-coding
chr17.4435076.+	chr17	4435076	4435077	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23605	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr19.18057763.+	chr19	18057763	18057764	+	0	NA	Intergenic	AluSx|SINE|Alu	-4348	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr10.7542189.-	chr10	7542189	7542190	-	0	NA	Intergenic	AluSc8|SINE|Alu	88741	NM_001029880	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
chrX.81762794.+	chrX	81762794	81762795	+	0	NA	Intergenic	AluY|SINE|Alu	-1000475	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr2.207270706.-	chr2	207270706	207270707	-	0	NA	Intergenic	AluY|SINE|Alu	37662	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr15.41539510.+	chr15	41539510	41539511	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16073	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr19.45660345.+	chr19	45660345	45660346	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3063	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr1.17266921.-	chr1	17266921	17266922	-	0	NA	"intron (NM_014675, intron 13 of 36)"	AluSg7|SINE|Alu	-18476	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr17.17767728.+	chr17	17767728	17767729	+	0	NA	"intron (NM_001033551, intron 9 of 13)"	AluY|SINE|Alu	-27403	NM_004176	6720	Hs.592123	NM_001005291	ENSG00000072310	SREBF1	SREBP-1c|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
chr20.45935929.-	chr20	45935929	45935930	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11317	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr10.119302076.-	chr10	119302076	119302077	-	0	NA	"5' UTR (NM_001165924, exon 1 of 2)"	"5' UTR (NM_001165924, exon 1 of 2)"	-120	NM_001165924	2018	Hs.202095	NM_001165924	ENSG00000170370	EMX2	-	empty spiracles homeobox 2	protein-coding
chrX.13062343.+	chrX	13062343	13062344	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	574	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr8.25460455.+	chr8	25460455	25460456	+	0	NA	Intergenic	Intergenic	143942	NM_152562	157313	Hs.33366	NM_152562	ENSG00000184661	CDCA2	Repo-Man	cell division cycle associated 2	protein-coding
chr17.21031955.-	chr17	21031955	21031956	-	0	NA	"intron (NM_015510, intron 1 of 6)"	AluY|SINE|Alu	-1714	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr3.9398157.+	chr3	9398157	9398158	+	0	NA	Intergenic	AluY|SINE|Alu	-6560	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr17.63480265.-	chr17	63480265	63480266	-	0	NA	Intergenic	SVA_D|Other|Other	-77475	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
chrX.53111620.+	chrX	53111620	53111621	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	78	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr13.66584770.-	chr13	66584770	66584771	-	0	NA	Intergenic	AluY|SINE|Alu	814531	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr6.88090576.+	chr6	88090576	88090577	+	0	NA	Intergenic	AluJb|SINE|Alu	-16266	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr19.4910180.+	chr19	4910180	4910181	+	0	NA	promoter-TSS (NM_013282)	promoter-TSS (NM_013282)	-386	NM_013282	29128	Hs.108106	NM_001048201		UHRF1	ICBP90|Np95|RNF106|hNP95|hUHRF1	ubiquitin-like with PHD and ring finger domains 1	protein-coding
chr1.97228888.+	chr1	97228888	97228889	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41713	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr1.227498648.+	chr1	227498648	227498649	+	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	7178	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chr1.10748863.-	chr1	10748863	10748864	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-107870	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr6.46742428.+	chr6	46742428	46742429	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18666	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr2.109090540.-	chr2	109090540	109090541	-	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	-24963	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr8.11030668.+	chr8	11030668	11030669	+	0	NA	"intron (NM_173683, intron 1 of 2)"	AluY|SINE|Alu	28207	NM_173683	286046	Hs.666146	NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	"XK, Kell blood group complex subunit-related family, member 6"	protein-coding
chr2.212542107.-	chr2	212542107	212542108	-	0	NA	"intron (NM_005235, intron 13 of 27)"	AluSp|SINE|Alu	-748977	NR_031643	100313771		NR_031643		MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	miscRNA
chr10.120841974.-	chr10	120841974	120841975	-	0	NA	Intergenic	AluSx3|SINE|Alu	1640	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr2.905803.+	chr2	905803	905804	+	0	NA	Intergenic	Intergenic	-40751	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr19.2340024.-	chr19	2340024	2340025	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11395	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr3.100286791.+	chr3	100286791	100286792	+	0	NA	"intron (NM_018004, intron 4 of 5)"	AluY|SINE|Alu	-41642	NM_032787	84873	Hs.334511	NM_032787	ENSG00000144820	GPR128	-	G protein-coupled receptor 128	protein-coding
chrX.38555454.+	chrX	38555454	38555455	+	0	NA	Intergenic	AluSg4|SINE|Alu	-105231	NM_001098791	58526	Hs.522605	NM_001098790	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
chr19.12803353.-	chr19	12803353	12803354	-	0	NA	"intron (NM_032301, intron 3 of 9)"	AluJb|SINE|Alu	-4102	NM_032301	84261	Hs.515154	NM_032301	ENSG00000132004	FBXW9	Fbw9	F-box and WD repeat domain containing 9	protein-coding
chr4.84865072.-	chr4	84865072	84865073	-	0	NA	Intergenic	SVA_D|Other|Other	-407602	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr1.40953743.-	chr1	40953743	40953744	-	0	NA	"intron (NM_198494, intron 3 of 5)"	AluJo|SINE|Alu	-10441	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr3.128640930.+	chr3	128640930	128640931	+	0	NA	Intergenic	AluY|SINE|Alu	42597	NM_014049	28976	Hs.567482	NM_014049	ENSG00000177646	ACAD9	NPD002	"acyl-CoA dehydrogenase family, member 9"	protein-coding
chr6.167600154.-	chr6	167600154	167600155	-	0	NA	Intergenic	Intergenic	-16073	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr9.138397688.+	chr9	138397688	138397689	+	0	NA	Intergenic	Intergenic	5211	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr12.75694234.-	chr12	75694234	75694235	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29602	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr5.92346154.+	chr5	92346154	92346155	+	0	NA	Intergenic	AluSq2|SINE|Alu	560345	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr12.133020959.+	chr12	133020959	133020960	+	0	NA	Intergenic	Intergenic	-46198	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr6.160985684.+	chr6	160985684	160985685	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53528	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr11.70049213.+	chr11	70049213	70049214	+	0	NA	promoter-TSS (NM_003824)	promoter-TSS (NM_003824)	-56	NM_003824	8772	Hs.86131	NM_003824	ENSG00000168040	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
chr22.31988900.+	chr22	31988900	31988901	+	0	NA	"intron (NM_001258326, intron 13 of 30)"	SVA_F|Other|Other	37910	NM_014338	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
chr13.45945080.-	chr13	45945080	45945081	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29600	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr7.64198989.-	chr7	64198989	64198990	-	0	NA	Intergenic	SVA_D|Other|Other	55777	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr3.48742523.+	chr3	48742523	48742524	+	0	NA	"intron (NM_001005910, intron 1 of 2)"	AluY|SINE|Alu	12188	NM_001146179	51447	Hs.595983	NM_001005909	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
chr17.4708731.+	chr17	4708731	4708732	+	0	NA	Intergenic	Intergenic	-1665	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr8.49427179.+	chr8	49427179	49427180	+	0	NA	Intergenic	CpG	220691	NM_024593	79645	Hs.23245	NM_001142857	ENSG00000034239	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
chr11.66884026.+	chr11	66884026	66884027	+	0	NA	Intergenic	AluSx|SINE|Alu	-2714	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr19.693338.+	chr19	693338	693339	+	0	NA	"intron (NM_214710, intron 2 of 4)"	AluJb|SINE|Alu	2123	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chr11.1158827.+	chr11	1158827	1158828	+	0	NA	Intergenic	Intergenic	83952	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr21.48082428.-	chr21	48082428	48082429	-	0	NA	"intron (NM_001242864, intron 7 of 8)"	"intron (NM_001242864, intron 7 of 8)"	-26921	NM_206962	3275	Hs.154163	NM_001242864	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
chr16.28435295.+	chr16	28435295	28435296	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2480	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr7.53587005.-	chr7	53587005	53587006	-	0	NA	Intergenic	AluY|SINE|Alu	-292619	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr9.8858148.+	chr9	8858148	8858149	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124202	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.73820266.-	chr7	73820266	73820267	-	0	NA	TTS (NM_003388)	TTS (NM_003388)	47854	NM_016328	9569	Hs.647056	NM_001199207	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
chr5.178032027.-	chr5	178032027	178032028	-	0	NA	"intron (NM_020666, intron 11 of 12)"	AluSx1|SINE|Alu	14471	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr11.69451966.-	chr11	69451966	69451967	-	0	NA	Intergenic	CpG	3907	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr4.39448480.-	chr4	39448480	39448481	-	0	NA	"exon (NM_175737, exon 4 of 5)"	"exon (NM_175737, exon 4 of 5)"	-11727	NM_001024921	6133	Hs.741045	NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16	ribosomal protein L9	protein-coding
chr16.58810865.+	chr16	58810865	58810866	+	0	NA	Intergenic	AluSq4|SINE|Alu	-42619	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr1.32122086.-	chr1	32122086	32122087	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11248	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr1.117244823.-	chr1	117244823	117244824	-	0	NA	Intergenic	AluY|SINE|Alu	-30452	NR_031564	100302117		NR_031564	ENSG00000211543	MIR320B1	MIR320B-1|MIRN320B1|hsa-mir-320b-1	microRNA 320b-1	miscRNA
chr12.12159688.-	chr12	12159688	12159689	-	0	NA	Intergenic	AluYf4|SINE|Alu	64190	NM_138723	79370	Hs.210343	NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2-like 14 (apoptosis facilitator)	protein-coding
chr20.2505855.+	chr20	2505855	2505856	+	0	NA	Intergenic	CpG	-11398	NM_080751	117532	Hs.352626	NM_080751	ENSG00000149488	TMC2	C20orf145|dJ686C3.3	transmembrane channel-like 2	protein-coding
chrX.109966241.-	chrX	109966241	109966242	-	0	NA	"intron (NM_001143981, intron 4 of 11)"	AluY|SINE|Alu	-72835	NM_145234	91851	Hs.496587	NM_001143981	ENSG00000101938	CHRDL1	CHL|NRLN1|VOPT|dA141H5.1	chordin-like 1	protein-coding
chr2.70199623.-	chr2	70199623	70199624	-	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	10226	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr14.53476808.+	chr14	53476808	53476809	+	0	NA	Intergenic	AluSx|SINE|Alu	-58993	NM_006832	10979	Hs.509343	NM_001134999	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
chr15.50998359.-	chr15	50998359	50998360	-	0	NA	Intergenic	AluYa8|SINE|Alu	19347	NM_017672	54822	Hs.512894	NM_017672		TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK	"transient receptor potential cation channel, subfamily M, member 7"	protein-coding
chr11.45810286.-	chr11	45810286	45810287	-	0	NA	Intergenic	AluSz6|SINE|Alu	15337	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr1.948169.-	chr1	948169	948170	-	0	NA	promoter-TSS (NM_005101)	promoter-TSS (NM_005101)	678	NM_005101	9636	Hs.458485	NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IP17|UCRP|hUCRP	ISG15 ubiquitin-like modifier	protein-coding
chr5.41712430.+	chr5	41712430	41712431	+	0	NA	Intergenic	AluY|SINE|Alu	158361	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA transferase 1	protein-coding
chr11.66676640.+	chr11	66676640	66676641	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1300	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr16.3755348.-	chr16	3755348	3755349	-	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	-12250	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr14.101693742.+	chr14	101693742	101693743	+	0	NA	Intergenic	Intergenic	157494	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chrX.53808313.+	chrX	53808313	53808314	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94616	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr13.103088634.-	chr13	103088634	103088635	-	0	NA	Intergenic	AluY|SINE|Alu	34510	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr19.33776965.-	chr19	33776965	33776966	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16465	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr2.182902205.+	chr2	182902205	182902206	+	0	NA	"intron (NR_048566, intron 2 of 5)"	AluSc|SINE|Alu	51654	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	"protein phosphatase 1, regulatory (inhibitor) subunit 1C"	protein-coding
chr22.31420926.+	chr22	31420926	31420927	+	0	NA	Intergenic	AluSx|SINE|Alu	55292	NR_002323	55000	Hs.554829	NR_002323		TUG1	LINC00080|NCRNA00080|TI-227H	taurine upregulated 1 (non-protein coding)	miscRNA
chr7.61969302.-	chr7	61969302	61969303	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-795132	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr6.141000399.-	chr6	141000399	141000400	-	0	NA	Intergenic	AluY|SINE|Alu	4552	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr2.182902218.+	chr2	182902218	182902219	+	0	NA	"intron (NR_048566, intron 2 of 5)"	AluSc|SINE|Alu	51667	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	"protein phosphatase 1, regulatory (inhibitor) subunit 1C"	protein-coding
chr14.20778836.+	chr14	20778836	20778837	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4683	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr1.55483739.-	chr1	55483739	55483740	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19122	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr18.34900357.-	chr18	34900357	34900358	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	"intron (NM_001025089, intron 3 of 11)"	-245643	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr6.7878907.+	chr6	7878907	7878908	+	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	31403	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr16.33293948.+	chr16	33293948	33293949	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4754	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr19.1252700.-	chr19	1252700	1252701	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4148	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr3.136117017.-	chr3	136117017	136117018	-	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	-147850	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr5.178491494.+	chr5	178491494	178491495	+	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	3887	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr9.138437859.+	chr9	138437859	138437860	+	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	-126	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr19.47364605.+	chr19	47364605	47364606	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10402	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr10.126538801.-	chr10	126538801	126538802	-	0	NA	Intergenic	AluSc|SINE|Alu	-48447	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr12.113494403.-	chr12	113494403	113494404	-	0	NA	Intergenic	CpG	1259	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr5.3188196.-	chr5	3188196	3188197	-	0	NA	Intergenic	CpG	-348012	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr12.132389101.+	chr12	132389101	132389102	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9822	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr10.24081715.+	chr10	24081715	24081716	+	0	NA	"intron (NM_001098500, intron 1 of 18)"	AluY|SINE|Alu	98040	NM_001098500	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr2.111367798.+	chr2	111367798	111367799	+	0	NA	Intergenic	Intergenic	-31489	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr9.141111322.-	chr9	141111322	141111323	-	0	NA	"intron (NM_001145249, intron 3 of 6)"	AluSc8|SINE|Alu	-4685	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	"family with sequence similarity 157, member B"	protein-coding
chr11.7535010.-	chr11	7535010	7535011	-	0	NA	promoter-TSS (NM_003621)	promoter-TSS (NM_003621)	-14	NM_003621	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr1.40953654.+	chr1	40953654	40953655	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10352	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr14.71374359.+	chr14	71374359	71374360	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	237	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr17.4926582.-	chr17	4926582	4926583	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12145	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr11.68855373.+	chr11	68855373	68855374	+	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	39023	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr7.69745551.-	chr7	69745551	69745552	-	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	-681645	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chrX.100277475.+	chrX	100277475	100277476	+	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	29630	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr17.80036907.-	chr17	80036907	80036908	-	0	NA	"3' UTR (NM_004104, exon 43 of 43)"	"3' UTR (NM_004104, exon 43 of 43)"	13210	NM_022156	64118	Hs.741994	NM_022156		DUS1L	DUS1|PP3111	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding
chr17.8252964.+	chr17	8252964	8252965	+	0	NA	Intergenic	AluSq2|SINE|Alu	9776	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr12.34492695.+	chr12	34492695	34492696	+	0	NA	Intergenic	GSATII|Satellite|centr	317479	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr16.537603.+	chr16	537603	537604	+	0	NA	"intron (NM_001142272, intron 2 of 11)"	"intron (NM_001142272, intron 2 of 11)"	12753	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr16.4596271.-	chr16	4596271	4596272	-	0	NA	Intergenic	AluY|SINE|Alu	7455	NM_001199056	29965	Hs.654653	NM_001199054	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death-inducing p53 target 1	protein-coding
chr12.118079847.+	chr12	118079847	118079848	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280240	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr6.74427499.+	chr6	74427499	74427500	+	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	21985	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr2.240371774.+	chr2	240371774	240371775	+	0	NA	Intergenic	SVA_D|Other|Other	-49131	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr2.90482979.-	chr2	90482979	90482980	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1364996	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr3.46709795.-	chr3	46709795	46709796	-	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	-9104	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr11.1366890.+	chr11	1366890	1366891	+	0	NA	Intergenic	AluJo|SINE|Alu	35952	NR_029409	255512	Hs.588291	NR_029409	ENSG00000255153	LOC255512	-	uncharacterized LOC255512	miscRNA
chr10.133203427.-	chr10	133203427	133203428	-	0	NA	Intergenic	Intergenic	93443	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr15.41539535.+	chr15	41539535	41539536	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16098	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr22.18131951.+	chr22	18131951	18131952	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6477	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr1.169305312.+	chr1	169305312	169305313	+	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	31874	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr12.67941920.-	chr12	67941920	67941921	-	0	NA	Intergenic	AluY|SINE|Alu	100592	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr8.120878157.+	chr8	120878157	120878158	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7743	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr18.77244847.+	chr18	77244847	77244848	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84521	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr19.6307834.+	chr19	6307834	6307835	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25806	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr15.66993608.-	chr15	66993608	66993609	-	0	NA	Intergenic	CpG	1066	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr9.139071841.+	chr9	139071841	139071842	+	0	NA	Intergenic	Intergenic	23163	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr22.18532569.-	chr22	18532569	18532570	-	0	NA	Intergenic	AluSx1|SINE|Alu	-20418	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	miscRNA
chr2.65360268.+	chr2	65360268	65360269	+	0	NA	Intergenic	AluY|SINE|Alu	-2833	NM_015543	5861	Hs.310645	NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	"RAB1A, member RAS oncogene family"	protein-coding
chr20.32469617.-	chr20	32469617	32469618	-	0	NA	Intergenic	AluJb|SINE|Alu	-70507	NM_176812	128866	Hs.472471	NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
chr2.47660754.+	chr2	47660754	47660755	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30548	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr17.8892439.-	chr17	8892439	8892440	-	0	NA	Intergenic	AluSp|SINE|Alu	23410	NM_001142633	23533	Hs.738684	NM_001142633	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	"phosphoinositide-3-kinase, regulatory subunit 5"	protein-coding
chr1.62231047.+	chr1	62231047	62231048	+	0	NA	"intron (NM_176877, intron 3 of 42)"	AluJr|SINE|Alu	22898	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr1.43189310.-	chr1	43189310	43189311	-	0	NA	Intergenic	AluJr|SINE|Alu	-16615	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr5.178885008.+	chr5	178885008	178885009	+	0	NA	Intergenic	AluY|SINE|Alu	-92554	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chr12.123770851.-	chr12	123770851	123770852	-	0	NA	Intergenic	AluSq2|SINE|Alu	13988	NR_073007	8099	Hs.433201	NM_001270433	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin-dependent kinase 2 associated protein 1	protein-coding
chr9.4666454.+	chr9	4666454	4666455	+	0	NA	"5' UTR (NM_001039395, exon 1 of 11)"	"5' UTR (NM_001039395, exon 1 of 11)"	220	NM_001039395	55064	Hs.179615	NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6-like	protein-coding
chr5.1038031.+	chr5	1038031	1038032	+	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	25058	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr11.61410925.-	chr11	61410925	61410926	-	0	NA	Intergenic	AluJb|SINE|Alu	-28417	NR_002775	113157	Hs.502733	NR_002775	ENSG00000243742	RPLP0P2	RPLP0L2|RPLP0_3_1146	"ribosomal protein, large, P0 pseudogene 2"	pseudo
chr21.45708570.-	chr21	45708570	45708571	-	0	NA	"intron (NM_000383, intron 5 of 13)"	"intron (NM_000383, intron 5 of 13)"	-2849	NM_000383	326	Hs.129829	NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
chr12.133338652.+	chr12	133338652	133338653	+	0	NA	promoter-TSS (NM_015114)	promoter-TSS (NM_015114)	-201	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr13.111268310.-	chr13	111268310	111268311	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-379	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr20.42218549.+	chr20	42218549	42218550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1030	NM_016004	51098	Hs.444332	NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1	intraflagellar transport 52 homolog (Chlamydomonas)	protein-coding
chr7.36403686.+	chr7	36403686	36403687	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	"intron (NM_001100425, intron 2 of 6)"	3096	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr1.147390358.-	chr1	147390358	147390359	-	0	NA	Intergenic	AluY|SINE|Alu	10148	NM_016334	51463	Hs.645432	NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|SH120	G protein-coupled receptor 89B	protein-coding
chr16.89703003.+	chr16	89703003	89703004	+	0	NA	"exon (NM_004413, exon 5 of 11)"	"exon (NM_004413, exon 5 of 11)"	16003	NM_004413	1800	Hs.109	NM_001128141	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1 (renal)	protein-coding
chrX.112142803.+	chrX	112142803	112142804	+	0	NA	Intergenic	AluY|SINE|Alu	-58760	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr1.182234360.-	chr1	182234360	182234361	-	0	NA	Intergenic	AluJb|SINE|Alu	-126179	NM_001033056	2752	Hs.518525	NM_001033044	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
chrX.77026624.+	chrX	77026624	77026625	+	0	NA	"intron (NM_138270, intron 1 of 33)"	AluSg|SINE|Alu	15095	NM_138270	546	Hs.653797	NM_000489	ENSG00000085224	ATRX	ATR2|JMS|MRXHF1|RAD54|RAD54L|SFM1|SHS|XH2|XNP|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding
chr13.108435253.-	chr13	108435253	108435254	-	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	-84207	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr1.8014222.-	chr1	8014222	8014223	-	0	NA	Intergenic	CpG	7492	NM_007262	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr6.55775076.+	chr6	55775076	55775077	+	0	NA	Intergenic	SVA_D|Other|Other	-34701	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr2.3331114.-	chr2	3331114	3331115	-	0	NA	"intron (NM_003310, intron 3 of 8)"	AluSz|SINE|Alu	-50539	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr9.135013593.-	chr9	135013593	135013594	-	0	NA	Intergenic	AluSz|SINE|Alu	23741	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr11.19881558.-	chr11	19881558	19881559	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99929	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chrX.128371096.-	chrX	128371096	128371097	-	0	NA	Intergenic	AluSq4|SINE|Alu	-286364	NM_139035	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1"	protein-coding
chr5.2751874.-	chr5	2751874	2751875	-	0	NA	promoter-TSS (NM_178569)	promoter-TSS (NM_178569)	105	NM_001134222	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr2.240371816.-	chr2	240371816	240371817	-	0	NA	Intergenic	SVA_D|Other|Other	49173	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr17.25676750.-	chr17	25676750	25676751	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55644	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr12.6167277.-	chr12	6167277	6167278	-	0	NA	"intron (NM_000552, intron 13 of 51)"	"intron (NM_000552, intron 13 of 51)"	-66559	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
chr12.111714716.-	chr12	111714716	111714717	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92209	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr15.77323437.-	chr15	77323437	77323438	-	0	NA	"intron (NM_003978, intron 9 of 14)"	"intron (NM_003978, intron 9 of 14)"	-35972	NM_003978	9051	Hs.129758	NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
chr7.5355902.+	chr7	5355902	5355903	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	33341	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chrX.142322491.-	chrX	142322491	142322492	-	0	NA	Intergenic	AluY|SINE|Alu	-208787	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	"SPANX family, member N4"	protein-coding
chr4.128980714.+	chr4	128980714	128980715	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1789	NM_018078	55132	Hs.657067	NM_018078	ENSG00000138709	LARP1B	LARP2	"La ribonucleoprotein domain family, member 1B"	protein-coding
chr14.21740972.+	chr14	21740972	21740973	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3334	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr10.67804003.+	chr10	67804003	67804004	+	0	NA	"intron (NM_013266, intron 15 of 17)"	AluSx|SINE|Alu	-881789	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
chr1.17029625.+	chr1	17029625	17029626	+	0	NA	"intron (NR_026567, intron 5 of 10)"	"intron (NR_026567, intron 5 of 10)"	17027	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr7.2582239.-	chr7	2582239	2582240	-	0	NA	"intron (NM_152743, intron 6 of 13)"	"intron (NM_152743, intron 6 of 13)"	-13153	NM_152743	221927	Hs.520623	NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|RMFSL	BRCA1-associated ATM activator 1	protein-coding
chr17.27717839.+	chr17	27717839	27717840	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-104	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr5.25535449.+	chr5	25535449	25535450	+	0	NA	Intergenic	AluY|SINE|Alu	-694757	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr5.138944062.+	chr5	138944062	138944063	+	0	NA	"intron (NM_181838, intron 2 of 7)"	AluSx1|SINE|Alu	3311	NM_181838	7322	Hs.108332	NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
chr10.135055557.-	chr10	135055557	135055558	-	0	NA	TTS (NM_014468)	TTS (NM_014468)	-4149	NM_014468	27287	Hs.125231	NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
chr1.244448174.-	chr1	244448174	244448175	-	0	NA	Intergenic	Intergenic	67763	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
chr2.229496713.+	chr2	229496713	229496714	+	0	NA	Intergenic	AluYc|SINE|Alu	-450352	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr7.158284921.-	chr7	158284921	158284922	-	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	-40584	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr14.73941556.+	chr14	73941556	73941557	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16088	NM_024644	79697	Hs.509916	NM_024644		C14orf169	MAPJD|NO66|ROX	chromosome 14 open reading frame 169	protein-coding
chr8.146024455.+	chr8	146024455	146024456	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	194	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr4.153601078.+	chr4	153601078	153601079	+	0	NA	"exon (NM_152680, exon 1 of 7)"	"exon (NM_152680, exon 1 of 7)"	239	NM_152680	201799	Hs.518900	NM_152680		TMEM154	-	transmembrane protein 154	protein-coding
chr2.210525381.-	chr2	210525381	210525382	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80978	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr20.32914492.+	chr20	32914492	32914493	+	0	NA	Intergenic	AluSx|SINE|Alu	-14884	NM_001161766	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr5.22326466.-	chr5	22326466	22326467	-	0	NA	"intron (NM_004061, intron 3 of 14)"	AluY|SINE|Alu	-184005	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr5.170687190.-	chr5	170687190	170687191	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49098	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr18.21826661.+	chr18	21826661	21826662	+	0	NA	"intron (NM_001242508, intron 3 of 15)"	AluSx|SINE|Alu	25535	NM_018030	114876	Hs.370725	NM_001242508	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
chr8.11312291.+	chr8	11312291	11312292	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11985	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr10.76198269.-	chr10	76198269	76198270	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262022	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr9.38829880.-	chr9	38829880	38829881	-	0	NA	Intergenic	AluY|SINE|Alu	-208795	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr11.126138409.-	chr11	126138409	126138410	-	0	NA	promoter-TSS (NM_017547)	promoter-TSS (NM_017547)	-468	NM_003139	6734	Hs.368376	NM_001177842	ENSG00000182934	SRPR	DP|Sralpha	signal recognition particle receptor (docking protein)	protein-coding
chrX.113575444.+	chrX	113575444	113575445	+	0	NA	Intergenic	AluJb|SINE|Alu	-243107	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr16.1332202.-	chr16	1332202	1332203	-	0	NA	Intergenic	AluSx|SINE|Alu	-25929	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr3.164852028.-	chr3	164852028	164852029	-	0	NA	Intergenic	AluY|SINE|Alu	55745	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr8.14882302.+	chr8	14882302	14882303	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171283	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr16.398915.-	chr16	398915	398916	-	0	NA	"intron (NM_003502, intron 1 of 10)"	AluY|SINE|Alu	-3761	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr9.20614275.+	chr9	20614275	20614276	+	0	NA	"intron (NM_004529, intron 2 of 10)"	AluSq2|SINE|Alu	8239	NM_004529	4300	Hs.591085	NM_004529		MLLT3	AF9|YEATS3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3"	protein-coding
chr12.38493592.-	chr12	38493592	38493593	-	0	NA	Intergenic	Intergenic	216965	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr7.77452612.-	chr7	77452612	77452613	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	16835	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr22.21330817.+	chr22	21330817	21330818	+	0	NA	"non-coding (NR_027464, exon 10 of 19)"	"non-coding (NR_027464, exon 10 of 19)"	-5741	NM_006767	8216	Hs.78788	NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1	leucine-zipper-like transcription regulator 1	protein-coding
chr6.125475715.+	chr6	125475715	125475716	+	0	NA	"intron (NM_001003395, intron 1 of 6)"	CpG	295	NM_001003395	7164	Hs.591347	NM_001003395	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
chr2.202046041.+	chr2	202046041	202046042	+	0	NA	Intergenic	AluSz|SINE|Alu	-1580	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr18.11959853.-	chr18	11959853	11959854	-	0	NA	Intergenic	SVA_D|Other|Other	21574	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr11.100596560.-	chr11	100596560	100596561	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38153	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr5.1882818.+	chr5	1882818	1882819	+	0	NA	promoter-TSS (NM_016358)	promoter-TSS (NM_016358)	62	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr12.75694240.-	chr12	75694240	75694241	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29596	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr6.149638273.-	chr6	149638273	149638274	-	0	NA	Intergenic	CpG	1163	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr5.42921808.+	chr5	42921808	42921809	+	0	NA	Intergenic	AluY|SINE|Alu	97105	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	miscRNA
chr1.28965047.-	chr1	28965047	28965048	-	0	NA	"intron (NM_005644, intron 1 of 5)"	AluSx|SINE|Alu	-4557	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chr8.143373438.-	chr8	143373438	143373439	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93721	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chrX.47700114.+	chrX	47700114	47700115	+	0	NA	"intron (NM_007137, intron 1 of 4)"	AluSp|SINE|Alu	3813	NM_007137	347344	Hs.114246	NM_007137	ENSG00000197779	ZNF81	HFZ20|MRX45|dJ54B20.6	zinc finger protein 81	protein-coding
chr11.406229.-	chr11	406229	406230	-	0	NA	"intron (NM_001135053, intron 9 of 9)"	"intron (NM_001135053, intron 9 of 9)"	-8770	NM_001135054	59307	Hs.501624	NM_001135053	ENSG00000185187	SIGIRR	TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding
chr3.31573984.+	chr3	31573984	31573985	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-507	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr5.90676731.+	chr5	90676731	90676732	+	0	NA	"non-coding (NR_027435, exon 1 of 3)"	"non-coding (NR_027435, exon 1 of 3)"	567	NR_027435	100129716	Hs.116364	NR_027435		ARRDC3-AS1	-	ARRDC3 antisense RNA 1	miscRNA
chr4.114652860.+	chr4	114652860	114652861	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30223	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr1.16166954.+	chr1	16166954	16166955	+	0	NA	"intron (NR_024279, intron 1 of 1)"	AluSc8|SINE|Alu	-7405	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chr3.51033845.+	chr3	51033845	51033846	+	0	NA	"intron (NM_004947, intron 5 of 52)"	AluY|SINE|Alu	321173	NM_004947	1795	Hs.476284	NM_004947	ENSG00000088538	DOCK3	MOCA|PBP	dedicator of cytokinesis 3	protein-coding
chr7.148597651.-	chr7	148597651	148597652	-	0	NA	Intergenic	AluSp|SINE|Alu	16210	NM_001203247	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr4.140477945.-	chr4	140477945	140477946	-	0	NA	promoter-TSS (NM_030648)	promoter-TSS (NM_030648)	368	NM_030648	80854	Hs.480792	NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing (lysine methyltransferase) 7	protein-coding
chr16.9185084.-	chr16	9185084	9185085	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	453	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chrX.48871379.-	chrX	48871379	48871380	-	0	NA	Intergenic	AluY|SINE|Alu	12704	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr10.21843632.+	chr10	21843632	21843633	+	0	NA	"intron (NM_001195627, intron 4 of 4)"	AluSc|SINE|Alu	20058	NM_001195626	8028	Hs.30385	NM_001195626	ENSG00000078403	MLLT10	AF10	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10"	protein-coding
chr11.19881568.-	chr11	19881568	19881569	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99939	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr12.110821733.-	chr12	110821733	110821734	-	0	NA	"intron (NM_016238, intron 6 of 10)"	AluSg4|SINE|Alu	-19802	NM_001137664	51434	Hs.719935	NM_001137664	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
chr11.4258889.+	chr11	4258889	4258890	+	0	NA	Intergenic	SVA_B|Other|Other	50507	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr9.861795.+	chr9	861795	861796	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20105	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr6.160985692.-	chr6	160985692	160985693	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53536	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr7.150812770.+	chr7	150812770	150812771	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28944	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr14.102109462.-	chr14	102109462	102109463	-	0	NA	Intergenic	AluY|SINE|Alu	-81774	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr1.119870189.+	chr1	119870189	119870190	+	0	NA	Intergenic	Intergenic	-41213	NM_016527	51179	Hs.659767	NM_001005783	ENSG00000116882	HAO2	GIG16|HAOX2	hydroxyacid oxidase 2 (long chain)	protein-coding
chr3.36494741.-	chr3	36494741	36494742	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72644	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr22.22259604.-	chr22	22259604	22259605	-	0	NA	Intergenic	AluSq2|SINE|Alu	37634	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr7.99630216.+	chr7	99630216	99630217	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	16997	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr2.17721638.-	chr2	17721638	17721639	-	0	NA	promoter-TSS (NM_003385)	promoter-TSS (NM_003385)	169	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
chr19.23432275.-	chr19	23432275	23432276	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-897	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr7.124427321.+	chr7	124427321	124427322	+	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	3543	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr5.103114761.+	chr5	103114761	103114762	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-216271	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr6.119182180.+	chr6	119182180	119182181	+	0	NA	"intron (NM_017696, intron 6 of 11)"	MER52A|LTR|ERV1	-33061	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	protein-coding
chr13.29913922.-	chr13	29913922	29913923	-	0	NA	"intron (NM_001033602, intron 5 of 13)"	CpG	88855	NM_015233	23281	Hs.22287	NM_001033602		MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated tumor suppressor candidate 2	protein-coding
chr16.89034067.+	chr16	89034067	89034068	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9437	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.120775624.+	chr2	120775624	120775625	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4839	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chrX.40183868.+	chrX	40183868	40183869	+	0	NA	Intergenic	AluY|SINE|Alu	-147286	NM_001123384	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr4.123063311.-	chr4	123063311	123063312	-	0	NA	Intergenic	AluSg7|SINE|Alu	28447	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr13.46489332.-	chr13	46489332	46489333	-	0	NA	Intergenic	MER52D|LTR|ERV1	63486	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr7.128141941.+	chr7	128141941	128141942	+	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	25158	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr4.103422409.-	chr4	103422409	103422410	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	77	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr21.45684317.+	chr21	45684317	45684318	+	0	NA	Intergenic	AluY|SINE|Alu	-2218	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr1.4715525.+	chr1	4715525	4715526	+	0	NA	"intron (NM_001042478, intron 1 of 5)"	CpG-299	420	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr2.240980352.+	chr2	240980352	240980353	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2047	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr7.156795122.+	chr7	156795122	156795123	+	0	NA	Intergenic	Intergenic	7007	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr6.170547780.-	chr6	170547780	170547781	-	0	NA	Intergenic	L2b|LINE|L2	-23877	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr9.138959053.-	chr9	138959053	138959054	-	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	-28078	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr21.47838739.+	chr21	47838739	47838740	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40123	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr6.170475068.-	chr6	170475068	170475069	-	0	NA	Intergenic	CpG	-96589	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr17.29249389.+	chr17	29249389	29249390	+	0	NA	"intron (NM_018404, intron 1 of 10)"	CpG	635	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr5.3764231.+	chr5	3764231	3764232	+	0	NA	Intergenic	Intergenic	168063	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr12.49163977.-	chr12	49163977	49163978	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1843	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr3.29051444.-	chr3	29051444	29051445	-	0	NA	Intergenic	AluSc8|SINE|Alu	271359	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr17.13504886.-	chr17	13504886	13504887	-	0	NA	"5' UTR (NM_006042, exon 1 of 2)"	"5' UTR (NM_006042, exon 1 of 2)"	-358	NM_006042	9955	Hs.462270	NM_006042	ENSG00000153976	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
chr16.30810972.+	chr16	30810972	30810973	+	0	NA	Intergenic	AluSx|SINE|Alu	-12449	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr19.16626083.-	chr19	16626083	16626084	-	0	NA	"intron (NM_032207, intron 7 of 8)"	AluSx1|SINE|Alu	-18878	NM_032207	84167	Hs.631627	NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
chr19.6307861.-	chr19	6307861	6307862	-	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	-25779	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr5.171601806.-	chr5	171601806	171601807	-	0	NA	"intron (NM_005990, intron 1 of 18)"	L2c|LINE|L2	-13540	NM_005990	6793	Hs.744005	NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
chr1.54966462.-	chr1	54966462	54966463	-	0	NA	Intergenic	AluSq|SINE|Alu	47345	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr6.58779267.-	chr6	58779267	58779268	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	491543	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr6.167607749.-	chr6	167607749	167607750	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23668	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr17.61686644.+	chr17	61686644	61686645	+	0	NA	TTS (NM_016360)	TTS (NM_016360)	8413	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
chr6.8388526.+	chr6	8388526	8388527	+	0	NA	Intergenic	LTR9|LTR|ERV1	47268	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr8.144124769.-	chr8	144124769	144124770	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4090	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr10.20637996.-	chr10	20637996	20637997	-	0	NA	Intergenic	AluSg4|SINE|Alu	202903	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr6.157732649.-	chr6	157732649	157732650	-	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	-12604	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr10.44870342.+	chr10	44870342	44870343	+	0	NA	TTS (NM_001033886)	TTS (NM_001033886)	10203	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chrX.137770374.+	chrX	137770374	137770375	+	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	-20420	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr11.70244793.-	chr11	70244793	70244794	-	0	NA	"intron (NM_138565, intron 1 of 16)"	CpG	-181	NM_138565	2017	Hs.596164	NM_001184740	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
chr7.47487734.-	chr7	47487734	47487735	-	0	NA	"intron (NM_022748, intron 4 of 30)"	"intron (NM_022748, intron 4 of 30)"	-134008	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
chr17.79611139.-	chr17	79611139	79611140	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1790	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr3.15431323.-	chr3	15431323	15431324	-	0	NA	Intergenic	AluSp|SINE|Alu	-37719	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr20.20772535.+	chr20	20772535	20772536	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79269	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr17.1532197.-	chr17	1532197	1532198	-	0	NA	promoter-TSS (NM_152346)	promoter-TSS (NM_152346)	67	NM_152346	124935	Hs.160550	NM_152346	ENSG00000167703	SLC43A2	LAT4	"solute carrier family 43, member 2"	protein-coding
chr5.675287.+	chr5	675287	675288	+	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	18223	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr19.2400840.+	chr19	2400840	2400841	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11056	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr3.42642494.-	chr3	42642494	42642495	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-78	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr21.40984892.+	chr21	40984892	40984893	+	0	NA	promoter-TSS (NR_026543)	promoter-TSS (NR_026543)	-143	NR_026542	114041	Hs.375120	NM_153754	ENSG00000184809	C21orf88	-	chromosome 21 open reading frame 88	miscRNA
chr4.166248549.+	chr4	166248549	166248550	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-269	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr9.141038883.-	chr9	141038883	141038884	-	0	NA	Intergenic	Intergenic	5682	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr1.53335612.-	chr1	53335612	53335613	-	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	-27429	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr18.60740416.+	chr18	60740416	60740417	+	0	NA	Intergenic	AluYb8|SINE|Alu	246197	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr17.7951744.-	chr17	7951744	7951745	-	0	NA	"exon (NM_001039131, exon 12 of 12)"	"exon (NM_001039131, exon 12 of 12)"	-9386	NM_001141	247	Hs.111256	NM_001039130	ENSG00000179593	ALOX15B	15-LOX-2	"arachidonate 15-lipoxygenase, type B"	protein-coding
chr10.8150605.-	chr10	8150605	8150606	-	0	NA	Intergenic	AluY|SINE|Alu	-53938	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr19.50803060.-	chr19	50803060	50803061	-	0	NA	"intron (NM_001145809, intron 39 of 42)"	AluSz|SINE|Alu	-29574	NM_004977	3748	Hs.467146	NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	"potassium voltage-gated channel, Shaw-related subfamily, member 3"	protein-coding
chr20.32072317.+	chr20	32072317	32072318	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5611	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr8.27695131.+	chr8	27695131	27695132	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	218	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr5.57859396.-	chr5	57859396	57859397	-	0	NA	Intergenic	SVA_A|Other|Other	19543	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr7.50080141.-	chr7	50080141	50080142	-	0	NA	"intron (NM_001159878, intron 4 of 7)"	L1PA7|LINE|L1	-52719	NM_001159878	11055	Hs.388841	NM_001159878	ENSG00000042813	ZPBP	ZPBP1	zona pellucida binding protein	protein-coding
chr6.159416884.+	chr6	159416884	159416885	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4314	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr13.111268063.-	chr13	111268063	111268064	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-132	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr12.113494342.+	chr12	113494342	113494343	+	0	NA	Intergenic	Intergenic	-1320	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr10.76198253.-	chr10	76198253	76198254	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262006	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr19.10041244.+	chr19	10041244	10041245	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5826	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr14.90540102.+	chr14	90540102	90540103	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSx|SINE|Alu	11994	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr18.10581552.+	chr18	10581552	10581553	+	0	NA	Intergenic	AluSq2|SINE|Alu	55679	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr1.212898481.-	chr1	212898481	212898482	-	0	NA	Intergenic	SVA_B|Other|Other	25154	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr21.37627716.+	chr21	37627716	37627717	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64771	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr2.36958608.-	chr2	36958608	36958609	-	0	NA	"intron (NM_053276, intron 3 of 15)"	AluSc|SINE|Alu	-34775	NM_001177969	5212	Hs.137415	NM_001177969	ENSG00000205221	VIT	-	vitrin	protein-coding
chr12.120959442.-	chr12	120959442	120959443	-	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	-7522	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr13.48030575.-	chr13	48030575	48030576	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544887	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr5.39803074.-	chr5	39803074	39803075	-	0	NA	Intergenic	AluYk4|SINE|Alu	377739	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr8.103501887.+	chr8	103501887	103501888	+	0	NA	Intergenic	Intergenic	-61961	NM_024410	4956	Hs.159274	NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
chr6.34004210.+	chr6	34004210	34004211	+	0	NA	"exon (NM_000841, exon 9 of 11)"	"exon (NM_000841, exon 9 of 11)"	-36382	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr5.136467583.-	chr5	136467583	136467584	-	0	NA	"intron (NM_004598, intron 4 of 10)"	AluY|SINE|Alu	-367435	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1"	protein-coding
chr5.175560117.-	chr5	175560117	175560118	-	0	NA	Intergenic	Intergenic	-13565	NR_038402	100507387	Hs.368516	NR_038402	ENSG00000182230	LOC100507387	-	uncharacterized LOC100507387	miscRNA
chr7.821229.-	chr7	821229	821230	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33965	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr10.135104684.+	chr10	135104684	135104685	+	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	-14277	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chrX.39680337.-	chrX	39680337	39680338	-	0	NA	Intergenic	CpG	-276382	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chrX.7012506.+	chrX	7012506	7012507	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53395	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chrX.20694427.-	chrX	20694427	20694428	-	0	NA	Intergenic	AluY|SINE|Alu	409677	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr1.51984043.+	chr1	51984043	51984044	+	0	NA	"intron (NM_001981, intron 1 of 24)"	"intron (NM_001981, intron 1 of 24)"	952	NM_001981	2060	Hs.83722	NM_001159969	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
chr3.114903237.+	chr3	114903237	114903238	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37110	NM_015642	26137	Hs.655108	NM_001164342	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
chr4.17513836.+	chr4	17513836	17513837	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	21	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr4.190662148.+	chr4	190662148	190662149	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199826	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chrX.53111576.-	chrX	53111576	53111577	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-34	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.938828.+	chr16	938828	938829	+	0	NA	"intron (NR_033646, intron 7 of 12)"	"intron (NR_033646, intron 7 of 12)"	82156	NR_033646	64788	Hs.732776	NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
chr11.400648.-	chr11	400648	400649	-	0	NA	"exon (NM_007183, exon 8 of 13)"	"exon (NM_007183, exon 8 of 13)"	-6431	NM_007183	11187	Hs.534395	NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
chr21.45649024.-	chr21	45649024	45649025	-	0	NA	"intron (NM_015259, intron 6 of 6)"	"intron (NM_015259, intron 6 of 6)"	-11810	NM_015259	23308	Hs.14155	NM_015259		ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T-cell co-stimulator ligand	protein-coding
chr2.170666405.+	chr2	170666405	170666406	+	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	11083	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr6.142795162.-	chr6	142795162	142795163	-	0	NA	Intergenic	AluSc|SINE|Alu	-163811	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr5.21341909.+	chr5	21341909	21341910	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-117680	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr8.145700333.+	chr8	145700333	145700334	+	0	NA	TTS (NM_145754)	TTS (NM_145754)	1385	NM_003923	8928	Hs.708365	NM_003923	ENSG00000160973	FOXH1	FAST-1|FAST1	forkhead box H1	protein-coding
chr19.5686506.-	chr19	5686506	5686507	-	0	NA	"exon (NM_001267868, exon 5 of 9)"	"exon (NM_001267868, exon 5 of 9)"	3766	NM_033643	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
chr10.135104710.-	chr10	135104710	135104711	-	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	14303	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr13.31735122.-	chr13	31735122	31735123	-	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	-995	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr2.71562043.+	chr2	71562043	71562044	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3158	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr10.134034420.+	chr10	134034420	134034421	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34006	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr3.112807950.+	chr3	112807950	112807951	+	0	NA	Intergenic	AluYc|SINE|Alu	-69395	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr12.131551492.+	chr12	131551492	131551493	+	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	-98064	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr16.89331776.-	chr16	89331776	89331777	-	0	NA	Intergenic	Intergenic	-47665	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chr10.104209696.-	chr10	104209696	104209697	-	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	-122	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr16.88074395.+	chr16	88074395	88074396	+	0	NA	"intron (NM_001173541, intron 10 of 11)"	"intron (NM_001173541, intron 10 of 11)"	70771	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr5.1494527.-	chr5	1494527	1494528	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29549	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr14.34924169.+	chr14	34924169	34924170	+	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	7299	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr5.31921553.+	chr5	31921553	31921554	+	0	NA	"intron (NM_178140, intron 1 of 23)"	AluJb|SINE|Alu	14712	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	miscRNA
chr11.76858977.-	chr11	76858977	76858978	-	0	NA	"exon (NM_001127179, exon 4 of 27)"	"exon (NM_001127179, exon 4 of 27)"	-19661	NM_001127180	4647	Hs.370421	NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
chr20.62108077.+	chr20	62108077	62108078	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4084	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr5.37295974.-	chr5	37295974	37295975	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46444	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr19.2424679.-	chr19	2424679	2424680	-	0	NA	TTS (NM_012458)	TTS (NM_012458)	-3196	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr3.171758275.-	chr3	171758275	171758276	-	0	NA	promoter-TSS (NM_001135095)	promoter-TSS (NM_001135095)	69	NM_001135095	64778	Hs.159430	NM_001135095	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
chr10.126277684.+	chr10	126277684	126277685	+	0	NA	"intron (NM_022126, intron 6 of 6)"	"intron (NM_022126, intron 6 of 6)"	127343	NM_022126	64077	Hs.527748	NM_001167880	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
chr12.32200097.+	chr12	32200097	32200098	+	0	NA	Intergenic	AluSz|SINE|Alu	-53295	NR_046944	100873778		NR_046944		RNU6-78	-	"RNA, U6 small nuclear 78"	snRNA
chr17.46916968.+	chr17	46916968	46916969	+	0	NA	"intron (NM_001261395, intron 1 of 11)"	AluSx1|SINE|Alu	8618	NM_001261393	10241	Hs.514920	NM_001261390	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
chr2.10424801.+	chr2	10424801	10424802	+	0	NA	Intergenic	Intergenic	-18229	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr12.132372587.+	chr12	132372587	132372588	+	0	NA	Intergenic	AluSx|SINE|Alu	-6692	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr12.49856911.+	chr12	49856911	49856912	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	73954	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr10.108027486.+	chr10	108027486	108027487	+	0	NA	Intergenic	LTR1D|LTR|ERV1	896980	NM_001206570	114815	Hs.591915	NM_001013031	ENSG00000108018	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chr2.39267423.-	chr2	39267423	39267424	-	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	79938	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr18.72802459.+	chr18	72802459	72802460	+	0	NA	Intergenic	Intergenic	118822	NM_175907	284273	Hs.465433	NM_175907		ZADH2	-	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
chr10.49659011.-	chr10	49659011	49659012	-	0	NA	"exon (NM_001256026, exon 7 of 8)"	"exon (NM_001256026, exon 7 of 8)"	-42681	NM_001256026	58504	Hs.655672	NM_001256027	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
chr19.45852830.+	chr19	45852830	45852831	+	0	NA	"exon (NM_177417, exon 8 of 13)"	"exon (NM_177417, exon 8 of 13)"	8832	NM_177417	147700	Hs.298079	NM_177417	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
chr8.609241.+	chr8	609241	609242	+	0	NA	Intergenic	Intergenic	71985	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr16.30810967.-	chr16	30810967	30810968	-	0	NA	Intergenic	AluSx|SINE|Alu	12444	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr15.89721782.+	chr15	89721782	89721783	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43140	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr6.126111932.-	chr6	126111932	126111933	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-23	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr10.76198278.+	chr10	76198278	76198279	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262031	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr4.38809155.-	chr4	38809155	38809156	-	0	NA	Intergenic	SVA_D|Other|Other	2743	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr16.88841806.-	chr16	88841806	88841807	-	0	NA	"intron (NM_001142864, intron 1 of 50)"	"intron (NM_001142864, intron 1 of 50)"	-9566	NM_001142864	9780	Hs.592074	NM_001142864	ENSG00000103335	PIEZO1	FAM38A|Mib	piezo-type mechanosensitive ion channel component 1	protein-coding
chr20.62479300.+	chr20	62479300	62479301	+	0	NA	Intergenic	Intergenic	-13266	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr11.5315838.+	chr11	5315838	5315839	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7338	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr6.13335667.-	chr6	13335667	13335668	-	0	NA	Intergenic	AluYa5|SINE|Alu	6880	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr1.9832334.-	chr1	9832334	9832335	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52216	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr2.101959028.+	chr2	101959028	101959029	+	0	NA	Intergenic	Intergenic	33116	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	miscRNA
chr3.15431344.+	chr3	15431344	15431345	+	0	NA	Intergenic	AluSp|SINE|Alu	37698	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr1.32731835.+	chr1	32731835	32731836	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7877	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr12.96314722.+	chr12	96314722	96314723	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21706	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr2.42222501.-	chr2	42222501	42222502	-	0	NA	Intergenic	SVA_D|Other|Other	41558	NM_001242815	400950	Hs.738713	NM_001242815	ENSG00000205086	C2orf91	-	chromosome 2 open reading frame 91	protein-coding
chr19.48836578.-	chr19	48836578	48836579	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7949	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr3.128161123.+	chr3	128161123	128161124	+	0	NA	Intergenic	Intergenic	-21314	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr10.104255209.-	chr10	104255209	104255210	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7303	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr7.104040196.+	chr7	104040196	104040197	+	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	71092	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr12.96314724.-	chr12	96314724	96314725	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21704	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr7.118277716.+	chr7	118277716	118277717	+	0	NA	Intergenic	AluY|SINE|Alu	413004	NM_019644	56311	Hs.729340	NM_001077708	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
chr15.27265756.-	chr15	27265756	27265757	-	0	NA	"intron (NM_001270873, intron 2 of 5)"	AluY|SINE|Alu	-49327	NM_033223	2567	Hs.569475	NM_001270873	ENSG00000182256	GABRG3	-	"gamma-aminobutyric acid (GABA) A receptor, gamma 3"	protein-coding
chr16.58288615.+	chr16	58288615	58288616	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4775	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr19.31839865.+	chr19	31839865	31839866	+	0	NA	"intron (NM_020856, intron 1 of 1)"	CpG	325	NM_020856	57616	Hs.278436	NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
chr2.1166120.-	chr2	1166120	1166121	-	0	NA	"intron (NM_018968, intron 7 of 16)"	L1MB5|LINE|L1	-219566	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr16.9185089.+	chr16	9185089	9185090	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-448	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr7.54614365.-	chr7	54614365	54614366	-	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	-4346	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr10.134034476.+	chr10	134034476	134034477	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34062	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr12.56127550.-	chr12	56127550	56127551	-	0	NA	Intergenic	AluSg|SINE|Alu	4093	NM_001257389	967	Hs.445570	NM_001257389	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
chr16.29042336.-	chr16	29042336	29042337	-	0	NA	Intergenic	AluSx1|SINE|Alu	43827	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
chr3.142840261.-	chr3	142840261	142840262	-	0	NA	"exon (NM_004267, exon 2 of 2)"	"exon (NM_004267, exon 2 of 2)"	-1643	NM_004267	9435	Hs.744216	NM_004267		CHST2	C6ST|GST-2|GST2|Gn6ST-1|glcNAc6ST-1	carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2	protein-coding
chr11.1122309.-	chr11	1122309	1122310	-	0	NA	Intergenic	Intergenic	-47434	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr2.242786288.+	chr2	242786288	242786289	+	0	NA	Intergenic	CpG	14770	NM_005018	5133	Hs.158297	NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l	programmed cell death 1	protein-coding
chr13.32980231.-	chr13	32980231	32980232	-	0	NA	"intron (NM_052818, intron 3 of 4)"	AluY|SINE|Alu	-22084	NM_052818	90634	Hs.732118	NM_001079691	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
chr10.135031522.+	chr10	135031522	135031523	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12256	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr19.4512384.+	chr19	4512384	4512385	+	0	NA	"exon (NM_001080400, exon 3 of 6)"	"exon (NM_001080400, exon 3 of 6)"	5332	NM_001080400	729359	Hs.591387	NM_001080400	ENSG00000167676	PLIN4	KIAA1881|S3-12	perilipin 4	protein-coding
chr7.130728509.+	chr7	130728509	130728510	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63280	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr15.83379962.-	chr15	83379962	83379963	-	0	NA	"non-coding (NR_034139, exon 3 of 4)"	"non-coding (NR_034139, exon 3 of 4)"	1327	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr20.43342071.+	chr20	43342071	43342072	+	0	NA	Intergenic	AluSx|SINE|Alu	-1814	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr16.619908.-	chr16	619908	619909	-	0	NA	promoter-TSS (NM_148920)	promoter-TSS (NM_148920)	60	NM_148920	9091	Hs.741878	NM_004204	ENSG00000007541	PIGQ	GPI1|c407A10.1	"phosphatidylinositol glycan anchor biosynthesis, class Q"	protein-coding
chr11.1593576.-	chr11	1593576	1593577	-	0	NA	promoter-TSS (NM_004420)	promoter-TSS (NM_004420)	395	NR_021489	338651	Hs.673618	NR_021489	ENSG00000233930	LOC338651	-	uncharacterized LOC338651	miscRNA
chr19.15718049.+	chr19	15718049	15718050	+	0	NA	Intergenic	AluY|SINE|Alu	-7980	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chrX.18365589.-	chrX	18365589	18365590	-	0	NA	"intron (NR_033717, intron 1 of 15)"	"intron (NR_033717, intron 1 of 15)"	-7255	NM_006089	10389	Hs.495774	NM_006089	ENSG00000102098	SCML2	-	sex comb on midleg-like 2 (Drosophila)	protein-coding
chr11.70246535.+	chr11	70246535	70246536	+	0	NA	"intron (NM_138565, intron 1 of 16)"	AluJr|SINE|Alu	1923	NM_138565	2017	Hs.596164	NM_001184740	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
chr14.101679079.-	chr14	101679079	101679080	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142831	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr10.125611167.+	chr10	125611167	125611168	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40333	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chrX.68786587.+	chrX	68786587	68786588	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49324	NM_001005610	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr9.11197013.+	chr9	11197013	11197014	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584290	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr11.68671199.+	chr11	68671199	68671200	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	104	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr19.9968037.-	chr19	9968037	9968038	-	0	NA	"exon (NM_058164, exon 4 of 6)"	"exon (NM_058164, exon 4 of 6)"	-22154	NR_038422	5300	Hs.465849	NM_006221	ENSG00000127445	PIN1	DOD|UBL5	"peptidylprolyl cis/trans isomerase, NIMA-interacting 1"	protein-coding
chr20.6033279.-	chr20	6033279	6033280	-	0	NA	"exon (NM_152611, exon 2 of 5)"	"exon (NM_152611, exon 2 of 5)"	-1447	NM_152611	164312	Hs.741928	NM_152611	ENSG00000125872	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
chr16.77246804.+	chr16	77246804	77246805	+	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	13455	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr6.149638252.+	chr6	149638252	149638253	+	0	NA	Intergenic	CpG	-1184	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr3.155507876.-	chr3	155507876	155507877	-	0	NA	"intron (NM_173657, intron 3 of 5)"	AluSz6|SINE|Alu	-16179	NM_173657	285315	Hs.350846	NM_173657	ENSG00000174928	C3orf33	AC3-33	chromosome 3 open reading frame 33	protein-coding
chr20.20772509.+	chr20	20772509	20772510	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79243	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr17.47846486.+	chr17	47846486	47846487	+	0	NA	Intergenic	AluSz|SINE|Alu	-4968	NM_030802	81558	Hs.514308	NM_030802	ENSG00000121104	FAM117A	-	"family with sequence similarity 117, member A"	protein-coding
chr9.16766073.-	chr9	16766073	16766074	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104713	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr20.32469631.+	chr20	32469631	32469632	+	0	NA	Intergenic	AluJb|SINE|Alu	70521	NM_176812	128866	Hs.472471	NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
chr14.105159010.-	chr14	105159010	105159011	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-3067	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr1.99544242.+	chr1	99544242	99544243	+	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	-73793	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr14.105116587.-	chr14	105116587	105116588	-	0	NA	Intergenic	CpG	-27499	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr18.20716073.-	chr18	20716073	20716074	-	0	NA	"exon (NM_001100619, exon 1 of 10)"	"exon (NM_001100619, exon 1 of 10)"	-346	NM_001100619	91768	Hs.11108	NM_001100619	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
chr17.11800278.+	chr17	11800278	11800279	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14059	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chrX.141491658.-	chrX	141491658	141491659	-	0	NA	Intergenic	AluY|SINE|Alu	198582	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr17.81083458.-	chr17	81083458	81083459	-	0	NA	Intergenic	CpG	-45891	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr2.235861314.+	chr2	235861314	235861315	+	0	NA	"intron (NM_014521, intron 1 of 5)"	CpG	686	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr6.157734037.+	chr6	157734037	157734038	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11216	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr12.11974597.+	chr12	11974597	11974598	+	0	NA	"intron (NR_046487, intron 1 of 3)"	AluJr|SINE|Alu	104510	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19	-	"RNA, U6 small nuclear 19"	snRNA
chrY.13489477.-	chrY	13489477	13489478	-	0	NA	Intergenic	Intergenic	-1043912	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr12.6109780.+	chr12	6109780	6109781	+	0	NA	"intron (NM_000552, intron 34 of 51)"	AluY|SINE|Alu	-54382	NM_020373	57101	Hs.148970	NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
chr3.31533162.+	chr3	31533162	31533163	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41329	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr15.45695663.+	chr15	45695663	45695664	+	0	NA	"exon (NM_024063, exon 1 of 8)"	"exon (NM_024063, exon 1 of 8)"	1144	NR_027635	79029	Hs.369657	NM_024063	ENSG00000171763	SPATA5L1	-	spermatogenesis associated 5-like 1	protein-coding
chr16.31932529.-	chr16	31932529	31932530	-	0	NA	Intergenic	AluY|SINE|Alu	-47450	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr17.3109970.-	chr17	3109970	3109971	-	0	NA	Intergenic	AluSc8|SINE|Alu	8945	NM_014565	8383	Hs.532688	NM_014565	ENSG00000172146	OR1A1	OR17-7	"olfactory receptor, family 1, subfamily A, member 1"	protein-coding
chr3.42642505.-	chr3	42642505	42642506	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-67	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr17.67639018.+	chr17	67639018	67639019	+	0	NA	Intergenic	AluY|SINE|Alu	228180	NM_002758	5608	Hs.463978	NM_002758		MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chr16.11293955.+	chr16	11293955	11293956	+	0	NA	Intergenic	Intergenic	56084	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
chr2.174617792.-	chr2	174617792	174617793	-	0	NA	Intergenic	AluSx4|SINE|Alu	-211155	NM_001017371	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr20.46019509.-	chr20	46019509	46019510	-	0	NA	Intergenic	AluY|SINE|Alu	34035	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr11.64120563.-	chr11	64120563	64120564	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6062	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr14.22030027.+	chr14	22030027	22030028	+	0	NA	Intergenic	AluSx3|SINE|Alu	8848	NM_001005465	26533	Hs.554581	NM_001005465	ENSG00000169208	OR10G3	OR14-40	"olfactory receptor, family 10, subfamily G, member 3"	protein-coding
chr1.114695326.-	chr1	114695326	114695327	-	0	NA	promoter-TSS (NM_205848)	promoter-TSS (NM_205848)	264	NM_205848	148281	Hs.736999	NM_001270805	ENSG00000134207	SYT6	sytVI	synaptotagmin VI	protein-coding
chr6.74964951.+	chr6	74964951	74964952	+	0	NA	Intergenic	SVA_C|Other|Other	559437	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr18.55790693.+	chr18	55790693	55790694	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25872	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr13.46489297.+	chr13	46489297	46489298	+	0	NA	Intergenic	MER52D|LTR|ERV1	-63451	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr6.105414627.-	chr6	105414627	105414628	-	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	-9704	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr1.26778178.+	chr1	26778178	26778179	+	0	NA	"intron (NM_205861, intron 6 of 8)"	AluY|SINE|Alu	19405	NM_205861	79947	Hs.369385	NM_001243564	ENSG00000117682	DHDDS	CIT|CPT|DS|HDS|RP59	dehydrodolichyl diphosphate synthase	protein-coding
chr1.55583180.+	chr1	55583180	55583181	+	0	NA	"intron (NM_015306, intron 38 of 67)"	AluYb8|SINE|Alu	78031	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr6.57322559.+	chr6	57322559	57322560	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140137	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr2.136760872.-	chr2	136760872	136760873	-	0	NA	Intergenic	AluSq2|SINE|Alu	17650	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr2.148597934.+	chr2	148597934	148597935	+	0	NA	Intergenic	AluJb|SINE|Alu	-4636	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	"activin A receptor, type IIA"	protein-coding
chr19.34114143.-	chr19	34114143	34114144	-	0	NA	"intron (NM_001127896, intron 1 of 3)"	CpG	-1270	NM_001127896	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr10.59080730.-	chr10	59080730	59080731	-	0	NA	Intergenic	AluY|SINE|Alu	16411	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr5.133831463.+	chr5	133831463	133831464	+	0	NA	Intergenic	Intergenic	-30335	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr2.79892034.+	chr2	79892034	79892035	+	0	NA	"intron (NM_001164883, intron 2 of 16)"	AluY|SINE|Alu	-15549	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr8.142011528.-	chr8	142011528	142011529	-	0	NA	promoter-TSS (NM_005607)	promoter-TSS (NM_005607)	116	NM_001199649	5747	Hs.395482	NM_001199649	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
chr10.114832301.-	chr10	114832301	114832302	-	0	NA	"intron (NM_001146285, intron 4 of 12)"	AluSx|SINE|Alu	-122292	NM_001146286	6934	Hs.593995	NM_001146274	ENSG00000148737	TCF7L2	TCF-4|TCF4	"transcription factor 7-like 2 (T-cell specific, HMG-box)"	protein-coding
chr7.155246295.-	chr7	155246295	155246296	-	0	NA	Intergenic	Intergenic	4529	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr10.24081687.+	chr10	24081687	24081688	+	0	NA	"intron (NM_001098500, intron 1 of 18)"	AluY|SINE|Alu	98012	NM_001098500	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr13.24884227.+	chr13	24884227	24884228	+	0	NA	"intron (NM_178540, intron 1 of 3)"	AluSg7|SINE|Alu	511	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr17.68529336.+	chr17	68529336	68529337	+	0	NA	Intergenic	AluY|SINE|Alu	363660	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	"potassium inwardly-rectifying channel, subfamily J, member 2"	protein-coding
chr12.122052225.+	chr12	122052225	122052226	+	0	NA	Intergenic	Intergenic	-12230	NM_032790	84876	Hs.55148	NM_032790		ORAI1	CRACM1|ORAT1|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
chr12.118663875.+	chr12	118663875	118663876	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	90005	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr17.72362423.+	chr17	72362423	72362424	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1222	NM_181790	350383	Hs.574368	NM_181790	ENSG00000257008	GPR142	PGR2	G protein-coupled receptor 142	protein-coding
chr14.102954939.-	chr14	102954939	102954940	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21189	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr2.242480074.-	chr2	242480074	242480075	-	0	NA	Intergenic	Intergenic	18072	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr12.49516409.-	chr12	49516409	49516410	-	0	NA	Intergenic	AluY|SINE|Alu	-8895	NM_006082	10376	Hs.524390	NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	"tubulin, alpha 1b"	protein-coding
chr19.2400857.+	chr19	2400857	2400858	+	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	11073	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr2.1554808.-	chr2	1554808	1554809	-	0	NA	Intergenic	Intergenic	-136628	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr7.26294395.-	chr7	26294395	26294396	-	0	NA	Intergenic	AluSx1|SINE|Alu	37120	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr1.21893073.+	chr1	21893073	21893074	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57215	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr3.169577097.-	chr3	169577097	169577098	-	0	NA	"intron (NM_001277128, intron 2 of 7)"	"intron (NM_001277128, intron 2 of 7)"	-10626	NM_001277128	79782	Hs.411295	NM_001277127	ENSG00000114248	LRRC31	-	leucine rich repeat containing 31	protein-coding
chr14.21741136.+	chr14	21741136	21741137	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3498	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr17.4708704.+	chr17	4708704	4708705	+	0	NA	Intergenic	AluSp|SINE|Alu	-1692	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr7.104040209.+	chr7	104040209	104040210	+	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	71105	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr11.69189617.+	chr11	69189617	69189618	+	0	NA	Intergenic	Intergenic	127995	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr13.50222182.-	chr13	50222182	50222183	-	0	NA	Intergenic	AluY|SINE|Alu	-19747	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr1.8021821.+	chr1	8021821	8021822	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	107	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr5.473245.-	chr5	473245	473246	-	0	NA	promoter-TSS (NR_024158)	promoter-TSS (NR_024158)	165	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	miscRNA
chr6.2085026.+	chr6	2085026	2085027	+	0	NA	"intron (NM_001253846, intron 4 of 10)"	AluY|SINE|Alu	91199	NM_001253846	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr21.31598698.+	chr21	31598698	31598699	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10229	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr1.21380293.-	chr1	21380293	21380294	-	0	NA	"intron (NM_003760, intron 1 of 31)"	SVA_D|Other|Other	-57583	NM_003760	8672	Hs.732241	NM_001198801	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	"eukaryotic translation initiation factor 4 gamma, 3"	protein-coding
chr9.83293417.+	chr9	83293417	83293418	+	0	NA	Intergenic	AluSc|SINE|Alu	1010179	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr3.22843321.-	chr3	22843321	22843322	-	0	NA	Intergenic	L1PA2|LINE|L1	401463	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr19.5686497.-	chr19	5686497	5686498	-	0	NA	"exon (NM_001267868, exon 5 of 9)"	"exon (NM_001267868, exon 5 of 9)"	3775	NM_033643	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
chrX.7012495.+	chrX	7012495	7012496	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53406	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr21.45566106.-	chr21	45566106	45566107	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12612	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr22.46931203.+	chr22	46931203	46931204	+	0	NA	"exon (NM_014246, exon 1 of 35)"	"exon (NM_014246, exon 1 of 35)"	1864	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr19.11060455.+	chr19	11060455	11060456	+	0	NA	Intergenic	AluY|SINE|Alu	-11143	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr3.48742394.-	chr3	48742394	48742395	-	0	NA	"intron (NM_001005910, intron 1 of 2)"	AluY|SINE|Alu	-12317	NM_001146179	51447	Hs.595983	NM_001005909	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
chr7.2358736.-	chr7	2358736	2358737	-	0	NA	Intergenic	AluSx|SINE|Alu	4637	NM_013321	29886	Hs.584900	NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
chr2.44294159.-	chr2	44294159	44294160	-	0	NA	Intergenic	SVA_D|Other|Other	71015	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr1.1847409.-	chr1	1847409	1847410	-	0	NA	"intron (NM_138705, intron 2 of 5)"	"intron (NM_138705, intron 2 of 5)"	-1143	NM_138705	163688	Hs.85902	NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin-like 6	protein-coding
chr20.31565638.+	chr20	31565638	31565639	+	0	NA	Intergenic	Intergenic	26601	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chrX.41544932.+	chrX	41544932	41544933	+	0	NA	"intron (NM_001126054, intron 5 of 25)"	AluJb|SINE|Alu	-3294	NM_005300	2857	Hs.495989	NM_001033513	ENSG00000171659	GPR34	-	G protein-coupled receptor 34	protein-coding
chr5.41870536.-	chr5	41870536	41870537	-	0	NA	"5' UTR (NM_000436, exon 1 of 17)"	"5' UTR (NM_000436, exon 1 of 17)"	-255	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA transferase 1	protein-coding
chr7.111133496.+	chr7	111133496	111133497	+	0	NA	"intron (NM_001244606, intron 3 of 6)"	AluY|SINE|Alu	68851	NM_032549	83943	Hs.731706	NM_001244606	ENSG00000184903	IMMP2L	IMP2|IMP2-LIKE	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
chr2.168780232.-	chr2	168780232	168780233	-	0	NA	Intergenic	AluY|SINE|Alu	-105050	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	"UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1"	protein-coding
chr10.74059502.+	chr10	74059502	74059503	+	0	NA	Intergenic	AluSz6|SINE|Alu	25825	NM_019058	54541	Hs.523012	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
chr19.56146329.+	chr19	56146329	56146330	+	0	NA	Intergenic	Intergenic	-6063	NM_207115	51157	Hs.631551	NM_001163423	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
chr5.178032026.-	chr5	178032026	178032027	-	0	NA	"intron (NM_020666, intron 11 of 12)"	AluSx1|SINE|Alu	14470	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr3.49479578.-	chr3	49479578	49479579	-	0	NA	Intergenic	AluSx1|SINE|Alu	12821	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr7.394781.+	chr7	394781	394782	+	0	NA	Intergenic	Intergenic	-24610	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr1.2798158.-	chr1	2798158	2798159	-	0	NA	Intergenic	Intergenic	91928	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr9.21968306.+	chr9	21968306	21968307	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1168	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr10.134067681.-	chr10	134067681	134067682	-	0	NA	"intron (NM_173575, intron 1 of 11)"	AluY|SINE|Alu	-53796	NM_173575	282974	Hs.469002	NM_173575	ENSG00000165752	STK32C	PKE|RP11-140A10.1|YANK3	serine/threonine kinase 32C	protein-coding
chr19.48814054.-	chr19	48814054	48814055	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9278	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chrX.53123439.+	chrX	53123439	53123440	+	0	NA	Intergenic	CpG	11897	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.9185069.+	chr16	9185069	9185070	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-468	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr3.49757508.-	chr3	49757508	49757509	-	0	NA	promoter-TSS (NM_198722)	promoter-TSS (NM_198722)	270	NM_198722	386724	Hs.567903	NM_198722	ENSG00000176020	AMIGO3	AMIGO-3	adhesion molecule with Ig-like domain 3	protein-coding
chr11.725955.+	chr11	725955	725956	+	0	NA	"intron (NM_022772, intron 17 of 20)"	CpG-3663	19835	NM_022772	64787	Hs.55016	NM_022772	ENSG00000177106	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
chr19.3613465.+	chr19	3613465	3613466	+	0	NA	"exon (NM_001080543, exon 8 of 10)"	"exon (NM_001080543, exon 8 of 10)"	6220	NR_038865	404665	Hs.719726	NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	miscRNA
chr3.57630917.-	chr3	57630917	57630918	-	0	NA	"intron (NM_152678, intron 11 of 19)"	AluSg|SINE|Alu	47702	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
chr2.25667216.-	chr2	25667216	25667217	-	0	NA	"intron (NM_001256303, intron 12 of 19)"	AluSx1|SINE|Alu	101757	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr12.132116833.+	chr12	132116833	132116834	+	0	NA	Intergenic	L1ME1|LINE|L1	-78799	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr21.43198265.-	chr21	43198265	43198266	-	0	NA	Intergenic	Intergenic	11016	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr12.131551526.-	chr12	131551526	131551527	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98030	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr5.72677733.-	chr5	72677733	72677734	-	0	NA	Intergenic	CpG	-66619	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC4	forkhead box D1	protein-coding
chr2.62740966.-	chr2	62740966	62740967	-	0	NA	Intergenic	AluY|SINE|Alu	7362	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr16.443589.+	chr16	443589	443590	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3603	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr8.57359103.-	chr8	57359103	57359104	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-179	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr16.89117862.+	chr16	89117862	89117863	+	0	NA	Intergenic	Intergenic	-42355	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr16.4537747.-	chr16	4537747	4537748	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8112	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr6.169424540.-	chr6	169424540	169424541	-	0	NA	Intergenic	CpG	-229597	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr1.121485049.-	chr1	121485049	121485050	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-224139	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
chr17.1099069.+	chr17	1099069	1099070	+	0	NA	Intergenic	AluY|SINE|Alu	-8453	NM_001159746	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chrM.5559.-	chrM	5559	5560	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr5.675425.-	chr5	675425	675426	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18085	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr19.615488.+	chr19	615488	615489	+	0	NA	"intron (NM_001194, intron 7 of 7)"	AluY|SINE|Alu	18080	NM_005035	5442	Hs.254113	NM_005035	ENSG00000099821	POLRMT	APOLMT|MTRNAP|MTRPOL|h-mtRPOL	polymerase (RNA) mitochondrial (DNA directed)	protein-coding
chr9.127626589.+	chr9	127626589	127626590	+	0	NA	Intergenic	AluSx|SINE|Alu	-2349	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr12.46426712.+	chr12	46426712	46426713	+	0	NA	Intergenic	AluY|SINE|Alu	-42311	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr1.40953675.+	chr1	40953675	40953676	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10373	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr10.73208016.-	chr10	73208016	73208017	-	0	NA	"intron (NM_022124, intron 3 of 67)"	"intron (NM_022124, intron 3 of 67)"	-51325	NM_001171932	64072	Hs.656032	NM_001171930	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
chr11.45810290.-	chr11	45810290	45810291	-	0	NA	Intergenic	AluSz6|SINE|Alu	15333	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr11.342930.-	chr11	342930	342931	-	0	NA	Intergenic	AluSz|SINE|Alu	22016	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr10.6985601.+	chr10	6985601	6985602	+	0	NA	Intergenic	AluSx1|SINE|Alu	164041	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr7.5244734.-	chr7	5244734	5244735	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9166	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr7.1474488.+	chr7	1474488	1474489	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24621	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr8.1771627.+	chr8	1771627	1771628	+	0	NA	promoter-TSS (NM_014629)	promoter-TSS (NM_014629)	-522	NM_014629	9639	Hs.98594	NM_014629	ENSG00000104728	ARHGEF10	GEF10	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding
chr16.57570475.-	chr16	57570475	57570476	-	0	NA	promoter-TSS (NM_033212)	promoter-TSS (NM_033212)	-2	NM_033212	92922	Hs.644611	NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
chr8.29303375.+	chr8	29303375	29303376	+	0	NA	Intergenic	AluSx3|SINE|Alu	-95108	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
chr12.133198219.+	chr12	133198219	133198220	+	0	NA	"exon (NM_016318, exon 10 of 10)"	"exon (NM_016318, exon 10 of 10)"	2816	NM_012226	22953	Hs.258580	NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	"purinergic receptor P2X, ligand-gated ion channel, 2"	protein-coding
chr4.166248535.+	chr4	166248535	166248536	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-283	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr6.139853799.-	chr6	139853799	139853800	-	0	NA	Intergenic	AluY|SINE|Alu	58066	NR_033919	645434	Hs.666240	NR_033919		LOC645434	-	uncharacterized LOC645434	miscRNA
chr11.71878782.+	chr11	71878782	71878783	+	0	NA	Intergenic	AluSx|SINE|Alu	-21820	NM_016725	2348	Hs.73769	NM_000802	ENSG00000110195	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
chrX.86721013.+	chrX	86721013	86721014	+	0	NA	Intergenic	SVA_C|Other|Other	-51702	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr4.106689321.+	chr4	106689321	106689322	+	0	NA	"intron (NM_024751, intron 5 of 11)"	AluY|SINE|Alu	57351	NM_001031720	79807	Hs.161429	NM_001031720	ENSG00000138780	GSTCD	-	"glutathione S-transferase, C-terminal domain containing"	protein-coding
chr13.19683532.-	chr13	19683532	19683533	-	0	NA	Intergenic	L1PA2|LINE|L1	33590	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr10.17622277.-	chr10	17622277	17622278	-	0	NA	Intergenic	AluY|SINE|Alu	-37096	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr19.35418155.-	chr19	35418155	35418156	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-348	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr20.52741099.+	chr20	52741099	52741100	+	0	NA	Intergenic	AluSx1|SINE|Alu	49417	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr7.66480080.-	chr7	66480080	66480081	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18288	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr3.181413295.-	chr3	181413295	181413296	-	0	NA	"intron (NR_075090, intron 2 of 2)"	CpG	16417	NM_003106	6657	Hs.732963	NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
chr20.30161035.-	chr20	30161035	30161036	-	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	-31	NR_046853	100874042	Hs.743198	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	miscRNA
chr8.144512806.-	chr8	144512806	144512807	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	204	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr6.88117988.-	chr6	88117988	88117989	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-298	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr14.93564787.-	chr14	93564787	93564788	-	0	NA	"intron (NM_014216, intron 2 of 10)"	AluY|SINE|Alu	-17476	NM_001142593	3705	Hs.308122	NM_001142593	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
chrX.19498822.+	chrX	19498822	19498823	+	0	NA	"intron (NM_001001671, intron 3 of 28)"	AluSx1|SINE|Alu	34557	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr16.66548335.-	chr16	66548335	66548336	-	0	NA	"intron (NM_001271935, intron 6 of 7)"	SVA_B|Other|Other	-35393	NM_001272050	7084	Hs.512619	NM_001172643	ENSG00000166548	TK2	MTDPS2|MTTK	"thymidine kinase 2, mitochondrial"	protein-coding
chr12.8057429.+	chr12	8057429	8057430	+	0	NA	Intergenic	AluSg7|SINE|Alu	31463	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr16.3203693.-	chr16	3203693	3203694	-	0	NA	Intergenic	AluSg|SINE|Alu	-18559	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr12.120959404.+	chr12	120959404	120959405	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7560	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr11.68231889.+	chr11	68231889	68231890	+	0	NA	"intron (NM_001164160, intron 1 of 24)"	AluSg7|SINE|Alu	3703	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr12.85283167.+	chr12	85283167	85283168	+	0	NA	"intron (NM_001146335, intron 1 of 10)"	AluY|SINE|Alu	23441	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr6.127837504.+	chr6	127837504	127837505	+	0	NA	"exon (NM_001012279, exon 2 of 12)"	"exon (NM_001012279, exon 2 of 12)"	2996	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr2.11311837.+	chr2	11311837	11311838	+	0	NA	"intron (NM_152391, intron 4 of 6)"	AluY|SINE|Alu	16297	NM_152391	130814	Hs.274415	NM_152391	ENSG00000162976	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
chr15.22816301.-	chr15	22816301	22816302	-	0	NA	Intergenic	AluY|SINE|Alu	17094	NM_052903	114791	Hs.533898	NM_001102610	ENSG00000153575	TUBGCP5	GCP5	"tubulin, gamma complex associated protein 5"	protein-coding
chr20.14910726.+	chr20	14910726	14910727	+	0	NA	promoter-TSS (NR_037841)	promoter-TSS (NR_037841)	-565	NR_072988	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	NCRNA00186	MACROD2 antisense RNA 1	miscRNA
chr1.240947680.-	chr1	240947680	240947681	-	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	172218	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr7.5610926.-	chr7	5610926	5610927	-	0	NA	Intergenic	AluSx1|SINE|Alu	21510	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr10.134300004.+	chr10	134300004	134300005	+	0	NA	Intergenic	Intergenic	41290	NM_173541	170393	Hs.375059	NM_173541		C10orf91	RP11-432J24.4|bA432J24.4	chromosome 10 open reading frame 91	protein-coding
chr7.36845299.+	chr7	36845299	36845300	+	0	NA	Intergenic	AluJb|SINE|Alu	-81145	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr7.1590451.+	chr7	1590451	1590452	+	0	NA	"intron (NM_001097620, intron 3 of 8)"	CpG	5615	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr16.31448997.-	chr16	31448997	31448998	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5351	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr19.33030713.+	chr19	33030713	33030714	+	0	NA	Intergenic	MER54B|LTR|ERVL	-41381	NM_004708	9141	Hs.443831	NM_004708		PDCD5	TFAR19	programmed cell death 5	protein-coding
chr9.6746467.-	chr9	6746467	6746468	-	0	NA	"intron (NM_001146696, intron 1 of 17)"	AluY|SINE|Alu	11174	NM_001146695	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr12.118079904.+	chr12	118079904	118079905	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280297	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr6.95173067.-	chr6	95173067	95173068	-	0	NA	Intergenic	L1MA3|LINE|L1	-756266	NR_015362	643432	Hs.509936	NR_015362		TSG1	-	tumor suppressor TSG1	miscRNA
chr3.194342227.-	chr3	194342227	194342228	-	0	NA	"intron (NM_001166305, intron 5 of 10)"	"intron (NM_001166305, intron 5 of 10)"	-11923	NM_001166305	93109	Hs.478729	NM_001011655	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
chr8.6644896.+	chr8	6644896	6644897	+	0	NA	Intergenic	AluY|SINE|Alu	-42135	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr1.238519088.-	chr1	238519088	238519089	-	0	NA	Intergenic	AluSg|SINE|Alu	-130229	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LOC339535	-	uncharacterized LOC339535	miscRNA
chr11.73641098.+	chr11	73641098	73641099	+	0	NA	Intergenic	AluSp|SINE|Alu	-20266	NM_153614	374407	Hs.567888	NM_153614	ENSG00000187726	DNAJB13	RSPH16A|TSARG5|TSARG6	"DnaJ (Hsp40) homolog, subfamily B, member 13"	protein-coding
chr12.830956.+	chr12	830956	830957	+	0	NA	Intergenic	AluSp|SINE|Alu	-31133	NM_001184985	65125	Hs.356604	NM_001184985	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
chr6.34004245.+	chr6	34004245	34004246	+	0	NA	"exon (NM_000841, exon 9 of 11)"	"exon (NM_000841, exon 9 of 11)"	-36417	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr9.39055085.+	chr9	39055085	39055086	+	0	NA	Intergenic	AluY|SINE|Alu	233215	NM_033655	79937	Hs.604441	NM_033655	ENSG00000106714	CNTNAP3	CASPR3|CNTNAP3A|RP11-138L21.1|RP11-290L7.1	contactin associated protein-like 3	protein-coding
chr12.75694207.-	chr12	75694207	75694208	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29629	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chrX.19862926.+	chrX	19862926	19862927	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42818	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr7.1001889.-	chr7	1001889	1001890	-	0	NA	Intergenic	Intergenic	7600	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr18.29434808.+	chr18	29434808	29434809	+	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	88283	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr1.5762925.+	chr1	5762925	5762926	+	0	NA	Intergenic	AluSp|SINE|Alu	138794	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	-	microRNA 4417	miscRNA
chr15.80600511.+	chr15	80600511	80600512	+	0	NA	"intron (NR_033833, intron 1 of 2)"	L1MB8|LINE|L1	33636	NR_033833	283688	Hs.525933	NR_033833	ENSG00000259361	LOC283688	-	uncharacterized LOC283688	miscRNA
chr7.148597543.+	chr7	148597543	148597544	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16102	NM_001203247	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr11.3224518.+	chr11	3224518	3224519	+	0	NA	Intergenic	Intergenic	-15044	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr7.121946053.+	chr7	121946053	121946054	+	0	NA	"non-coding (NR_036484, exon 3 of 7)"	"non-coding (NR_036484, exon 3 of 7)"	-1488	NM_001024613	389549	Hs.553970	NM_001024613	ENSG00000128610	FEZF1	FEZ|ZNF312B	FEZ family zinc finger 1	protein-coding
chr12.109325568.+	chr12	109325568	109325569	+	0	NA	"intron (NM_018711, intron 10 of 14)"	AluY|SINE|Alu	51711	NM_001917	1610	Hs.113227	NM_001917	ENSG00000110887	DAO	DAAO|DAMOX|OXDA	D-amino-acid oxidase	protein-coding
chr2.240530735.+	chr2	240530735	240530736	+	0	NA	Intergenic	Intergenic	-153819	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chr5.24116824.-	chr5	24116824	24116825	-	0	NA	Intergenic	AluY|SINE|Alu	-528261	NM_006727	1008	Hs.92489	NM_006727	ENSG00000040731	CDH10	-	"cadherin 10, type 2 (T2-cadherin)"	protein-coding
chr13.114899250.+	chr13	114899250	114899251	+	0	NA	Intergenic	Intergenic	-1155	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr12.56703359.-	chr12	56703359	56703360	-	0	NA	TTS (NM_014255)	TTS (NM_014255)	-6769	NM_001190991	10330	Hs.8752	NM_001190991	ENSG00000257727	CNPY2	HP10390|MSAP|TMEM4|ZSIG9	canopy 2 homolog (zebrafish)	protein-coding
chr1.150158684.-	chr1	150158684	150158685	-	0	NA	Intergenic	AluY|SINE|Alu	-36514	NM_016274	51177	Hs.438824	NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|OC120	"pleckstrin homology domain containing, family O member 1"	protein-coding
chr14.77927226.-	chr14	77927226	77927227	-	0	NA	"intron (NM_012111, intron 2 of 8)"	AluSc8|SINE|Alu	-2853	NM_012111	10598	Hs.204041	NM_012111	ENSG00000100591	AHSA1	AHA1|C14orf3|p38	"AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)"	protein-coding
chr16.67194360.+	chr16	67194360	67194361	+	0	NA	promoter-TSS (NM_003789)	promoter-TSS (NM_003789)	469	NM_018378	55336	Hs.710714	NM_018378	ENSG00000135722	FBXL8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding
chr15.97879768.-	chr15	97879768	97879769	-	0	NA	Intergenic	AluSp|SINE|Alu	-537891	NR_024172	91948	Hs.130423	NR_024172	ENSG00000251209	LOC91948	-	uncharacterized LOC91948	miscRNA
chr3.22843347.+	chr3	22843347	22843348	+	0	NA	Intergenic	L1PA2|LINE|L1	-401437	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chrX.31406404.+	chrX	31406404	31406405	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120011	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr17.25539016.+	chr17	25539016	25539017	+	0	NA	Intergenic	SVA_E|Other|Other	82006	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	miscRNA
chr6.24720964.-	chr6	24720964	24720965	-	0	NA	Intergenic	CpG	1561	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr19.18180406.-	chr19	18180406	18180407	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17291	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr4.55034943.-	chr4	55034943	55034944	-	0	NA	Intergenic	AluSx3|SINE|Alu	60321	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr19.10041268.+	chr19	10041268	10041269	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5802	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr6.33500227.+	chr6	33500227	33500228	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47843	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr19.9311340.+	chr19	9311340	9311341	+	0	NA	Intergenic	AluSc8|SINE|Alu	14207	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr2.58077711.+	chr2	58077711	58077712	+	0	NA	Intergenic	Intergenic	-196066	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr3.43950002.-	chr3	43950002	43950003	-	0	NA	Intergenic	LTR16A|LTR|ERVL	205702	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1	microRNA 138-1	miscRNA
chr18.67270907.-	chr18	67270907	67270908	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202623	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr16.84670332.-	chr16	84670332	84670333	-	0	NA	Intergenic	AluY|SINE|Alu	11799	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr18.77627522.-	chr18	77627522	77627523	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3854	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr14.66379995.+	chr14	66379995	66379996	+	0	NA	Intergenic	MIR3|SINE|MIR	500547	NR_038170	2530	Hs.654961	NM_004480	ENSG00000033170	FUT8	-	"fucosyltransferase 8 (alpha (1,6) fucosyltransferase)"	protein-coding
chr2.99085993.+	chr2	99085993	99085994	+	0	NA	"intron (NM_001134225, intron 1 of 24)"	AluSx|SINE|Alu	24672	NM_001134224	3631	Hs.469386	NM_001134224	ENSG00000040933	INPP4A	INPP4|TVAS1	"inositol polyphosphate-4-phosphatase, type I, 107kDa"	protein-coding
chr14.23517073.+	chr14	23517073	23517074	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5697	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr10.94709444.-	chr10	94709444	94709445	-	0	NA	"intron (NM_001013848, intron 14 of 21)"	AluSq2|SINE|Alu	-101219	NM_019053	54536	Hs.655657	NM_001013848	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
chr13.68791138.-	chr13	68791138	68791139	-	0	NA	Intergenic	AluY|SINE|Alu	-668319	NR_038878	338862		NR_038878		LINC00550	-	long intergenic non-protein coding RNA 550	miscRNA
chr15.57179647.+	chr15	57179647	57179648	+	0	NA	"non-coding (NR_015419, exon 4 of 4)"	"non-coding (NR_015419, exon 4 of 4)"	31050	NR_015419	145783	Hs.620525	NR_015419	ENSG00000259484	LOC145783	-	uncharacterized LOC145783	miscRNA
chr2.62612396.+	chr2	62612396	62612397	+	0	NA	Intergenic	AluSg|SINE|Alu	121208	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chrX.47336593.-	chrX	47336593	47336594	-	0	NA	"intron (NM_153380, intron 1 of 4)"	AluSx1|SINE|Alu	-5752	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr1.186571131.-	chr1	186571131	186571132	-	0	NA	Intergenic	AluYc|SINE|Alu	-78428	NM_000963	5743	Hs.196384	NM_000963	ENSG00000073756	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)	protein-coding
chr8.144512813.+	chr8	144512813	144512814	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-211	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.3755355.+	chr16	3755355	3755356	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12243	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr1.194872541.+	chr1	194872541	194872542	+	0	NA	Intergenic	AluSx|SINE|Alu	1679070	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr14.76577616.+	chr14	76577616	76577617	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40643	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr10.7709533.-	chr10	7709533	7709534	-	0	NA	promoter-TSS (NM_030569)	promoter-TSS (NM_030569)	572	NM_001001851	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr14.52633558.+	chr14	52633558	52633559	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-97612	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
chr1.156593691.+	chr1	156593691	156593692	+	0	NA	"exon (NM_021817, exon 4 of 7)"	"exon (NM_021817, exon 4 of 7)"	4605	NM_021817	60484	Hs.410719	NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
chr17.7246094.-	chr17	7246094	7246095	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6246	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr17.8252947.+	chr17	8252947	8252948	+	0	NA	Intergenic	AluSq2|SINE|Alu	9759	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chrX.133328835.-	chrX	133328835	133328836	-	0	NA	Intergenic	AluSg|SINE|Alu	24527	NR_029523	406899		NR_029523	ENSG00000207602	MIR106A	MIRN106A|mir-106	microRNA 106a	miscRNA
chr12.125122415.+	chr12	125122415	125122416	+	0	NA	Intergenic	Intergenic	-70405	NM_001206654	9612	Hs.137510	NM_001077261	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
chr5.133831529.-	chr5	133831529	133831530	-	0	NA	Intergenic	AluY|SINE|Alu	30269	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr18.74408689.+	chr18	74408689	74408690	+	0	NA	Intergenic	AluY|SINE|Alu	125562	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr13.83333816.-	chr13	83333816	83333817	-	0	NA	Intergenic	AluYb8|SINE|Alu	-1122712	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chrX.153657111.-	chrX	153657111	153657112	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-133	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr8.1312661.-	chr8	1312661	1312662	-	0	NA	Intergenic	Intergenic	61834	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr6.16831765.-	chr6	16831765	16831766	-	0	NA	Intergenic	AluY|SINE|Alu	70044	NM_000332	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
chr1.147010002.-	chr1	147010002	147010003	-	0	NA	Intergenic	AluY|SINE|Alu	3180	NM_004326	607	Hs.415209	NM_004326	ENSG00000116128	BCL9	LGS	B-cell CLL/lymphoma 9	protein-coding
chrX.42145034.-	chrX	42145034	42145035	-	0	NA	Intergenic	SVA_D|Other|Other	362747	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr6.108315383.+	chr6	108315383	108315384	+	0	NA	Intergenic	AluSz|SINE|Alu	-35901	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr7.2518181.-	chr7	2518181	2518182	-	0	NA	Intergenic	Intergenic	33982	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr3.8721266.+	chr3	8721266	8721267	+	0	NA	Intergenic	Intergenic	-27502	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr6.127738584.+	chr6	127738584	127738585	+	0	NA	Intergenic	AluY|SINE|Alu	41951	NM_014702	9729	Hs.319247	NM_014702		KIAA0408	RP3-403A15.2	KIAA0408	protein-coding
chr5.1494534.-	chr5	1494534	1494535	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29542	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr1.110881119.+	chr1	110881119	110881120	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	674	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr2.85554153.+	chr2	85554153	85554154	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1266	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr17.30414155.-	chr17	30414155	30414156	-	0	NA	Intergenic	FLAM_A|SINE|Alu	-46800	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
chr16.50142551.-	chr16	50142551	50142552	-	0	NA	Intergenic	AluSz6|SINE|Alu	-42670	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr12.66636769.-	chr12	66636769	66636770	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53791	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr2.119962938.+	chr2	119962938	119962939	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-18446	NM_001008410	55240	Hs.647822	NM_001008410	ENSG00000115107	STEAP3	STMP3|TSAP6|dudlin-2	"STEAP family member 3, metalloreductase"	protein-coding
chr6.1035130.+	chr6	1035130	1035131	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66437	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chr5.178157376.+	chr5	178157376	178157377	+	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	327	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr7.5557982.+	chr7	5557982	5557983	+	0	NA	Intergenic	AluYc|SINE|Alu	-4583	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr14.50838466.+	chr14	50838466	50838467	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24151	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr3.38106454.+	chr3	38106454	38106455	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25758	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chrX.56793972.-	chrX	56793972	56793973	-	0	NA	"intron (NR_015367, intron 2 of 2)"	LTR12C|LTR|ERV1	29955	NR_002308	442454	Hs.663220	NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
chr3.188566623.+	chr3	188566623	188566624	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323140	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr7.130418565.+	chr7	130418565	130418566	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	323	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr6.150275478.+	chr6	150275478	150275479	+	0	NA	Intergenic	CpG	-9665	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr9.140715909.-	chr9	140715909	140715910	-	0	NA	"intron (NM_024757, intron 25 of 26)"	AluJr|SINE|Alu	16962	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	miscRNA
chr19.11060454.+	chr19	11060454	11060455	+	0	NA	Intergenic	AluY|SINE|Alu	-11144	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr7.100027904.-	chr7	100027904	100027905	-	0	NA	"exon (NM_019606, exon 1 of 4)"	"exon (NM_019606, exon 1 of 4)"	-650	NM_019606	56257	Hs.178011	NM_001194990	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
chrX.29933241.+	chrX	29933241	29933242	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300434	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr2.220093654.+	chr2	220093654	220093655	+	0	NA	promoter-TSS (NM_001042410)	promoter-TSS (NM_001042410)	707	NM_024085	79065	Hs.323363	NM_001077198	ENSG00000198925	ATG9A	APG9L1|MGD3208|mATG9	autophagy related 9A	protein-coding
chr11.1946059.-	chr11	1946059	1946060	-	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	-5260	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr6.24720975.+	chr6	24720975	24720976	+	0	NA	Intergenic	CpG	-1572	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr2.97168918.+	chr2	97168918	97168919	+	0	NA	"intron (NR_026875, intron 1 of 3)"	"intron (NR_026875, intron 1 of 3)"	4928	NR_026875	93082	Hs.149219	NR_026875	ENSG00000163121	NEURL3	LINCR	neuralized homolog 3 (Drosophila) pseudogene	pseudo
chr22.30753793.+	chr22	30753793	30753794	+	0	NA	promoter-TSS (NM_001005409)	promoter-TSS (NM_001005409)	-880	NM_005877	10291	Hs.505597	NM_001005409	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	"splicing factor 3a, subunit 1, 120kDa"	protein-coding
chr3.172180117.-	chr3	172180117	172180118	-	0	NA	Intergenic	AluY|SINE|Alu	13871	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr13.99373209.-	chr13	99373209	99373210	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31720	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr17.78559347.-	chr17	78559347	78559348	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40722	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr22.45845262.+	chr22	45845262	45845263	+	0	NA	Intergenic	AluSz6|SINE|Alu	35690	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11	RIB43A domain with coiled-coils 2	protein-coding
chr19.21789910.+	chr19	21789910	21789911	+	0	NA	Intergenic	SVA_D|Other|Other	101473	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr16.83994732.+	chr16	83994732	83994733	+	0	NA	"intron (NM_182981, intron 5 of 5)"	MER4A1|LTR|ERV1	-7505	NM_019065	54550	Hs.140950	NM_019065	ENSG00000103154	NECAB2	EFCBP2	N-terminal EF-hand calcium binding protein 2	protein-coding
chr19.5658847.+	chr19	5658847	5658848	+	0	NA	"intron (NR_037699, intron 12 of 18)"	AluY|SINE|Alu	-21929	NM_198533	374875	Hs.739286	NM_001267868	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid (11-beta) dehydrogenase 1-like	protein-coding
chr16.88469564.+	chr16	88469564	88469565	+	0	NA	Intergenic	Intergenic	-24315	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr1.3038074.+	chr1	3038074	3038075	+	0	NA	"intron (NM_199454, intron 1 of 16)"	CpG	-6465	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr13.31023989.-	chr13	31023989	31023990	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16092	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr14.104097551.-	chr14	104097551	104097552	-	0	NA	"intron (NM_182923, intron 1 of 14)"	AluY|SINE|Alu	-2026	NM_005552	3831	Hs.657678	NM_001130107	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
chr13.99373208.-	chr13	99373208	99373209	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31721	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr2.10424795.-	chr2	10424795	10424796	-	0	NA	Intergenic	Intergenic	18235	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr5.177547388.+	chr5	177547388	177547389	+	0	NA	"exon (NM_015111, exon 3 of 5)"	"exon (NM_015111, exon 3 of 5)"	6832	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr11.62551825.-	chr11	62551825	62551826	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3049	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr5.112263723.+	chr5	112263723	112263724	+	0	NA	Intergenic	AluY|SINE|Alu	-5692	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr5.2391242.+	chr5	2391242	2391243	+	0	NA	Intergenic	Intergenic	360527	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr2.38825096.+	chr2	38825096	38825097	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5082	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr19.507930.+	chr19	507930	507931	+	0	NA	"intron (NM_033513, intron 1 of 1)"	CpG	433	NM_033513	91978	Hs.369613	NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
chr4.622205.+	chr4	622205	622206	+	0	NA	"intron (NM_000283, intron 1 of 21)"	"intron (NM_000283, intron 1 of 21)"	2842	NM_001145291	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr17.17067745.+	chr17	17067745	17067746	+	0	NA	"intron (NM_201274, intron 15 of 23)"	CpG	41901	NM_178836	201164	Hs.729079	NM_178836	ENSG00000179598	PLD6	ZUC	"phospholipase D family, member 6"	protein-coding
chr6.111112112.+	chr6	111112112	111112113	+	0	NA	"intron (NM_015076, intron 1 of 12)"	AluSx3|SINE|Alu	24300	NM_015076	23097	Hs.584867	NM_015076	ENSG00000155111	CDK19	CDC2L6|CDK11|bA346C16.3	cyclin-dependent kinase 19	protein-coding
chr1.218165382.+	chr1	218165382	218165383	+	0	NA	Intergenic	AluSq|SINE|Alu	99140	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr12.70060054.+	chr12	70060054	70060055	+	0	NA	"intron (NM_032735, intron 9 of 9)"	AluSz|SINE|Alu	23002	NM_152439	144453	Hs.280782	NM_032735	ENSG00000127325	BEST3	VMD2L3	bestrophin 3	protein-coding
chr10.134216455.-	chr10	134216455	134216456	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5753	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr16.1258511.-	chr16	1258511	1258512	-	0	NA	"intron (NM_021098, intron 16 of 34)"	"intron (NM_021098, intron 16 of 34)"	-16743	NM_012467	25823	Hs.592076	NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
chr21.45566077.+	chr21	45566077	45566078	+	0	NA	TTS (NM_198155)	TTS (NM_198155)	12583	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr7.22396714.+	chr7	22396714	22396715	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-181	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr7.157129497.+	chr7	157129497	157129498	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-213	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr2.203038195.-	chr2	203038195	203038196	-	0	NA	"intron (NM_001277372, intron 15 of 21)"	AluSp|SINE|Alu	-65127	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr20.4729620.-	chr20	4729620	4729621	-	0	NA	Intergenic	Intergenic	8306	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr2.173292732.-	chr2	173292732	173292733	-	0	NA	"intron (NM_000210, intron 1 of 25)"	CpG	-418	NM_001079818	3655	Hs.133397	NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6B|VLA-6	"integrin, alpha 6"	protein-coding
chr3.196619059.+	chr3	196619059	196619060	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24332	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr19.267135.+	chr19	267135	267136	+	0	NA	Intergenic	CpG	24034	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr4.187811369.+	chr4	187811369	187811370	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-166382	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chr12.131419263.+	chr12	131419263	131419264	+	0	NA	Intergenic	AluSz|SINE|Alu	-19189	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr9.14322670.-	chr9	14322670	14322671	-	0	NA	"intron (NM_001190738, intron 1 of 8)"	CpG	8625	NM_001190737	4781	Hs.644095	NM_001190737	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
chr11.76645026.-	chr11	76645026	76645027	-	0	NA	"intron (NM_018367, intron 2 of 10)"	SVA_D|Other|Other	-73109	NM_018367	55331	Hs.23862	NM_018367		ACER3	APHC|PHCA	alkaline ceramidase 3	protein-coding
chr20.61763839.-	chr20	61763839	61763840	-	0	NA	Intergenic	Intergenic	30168	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr7.821263.-	chr7	821263	821264	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33931	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr1.61549227.-	chr1	61549227	61549228	-	0	NA	"intron (NM_005595, intron 1 of 9)"	CpG	-1247	NM_001134673	4774	Hs.740757	NM_001134673	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
chr2.204121195.+	chr2	204121195	204121196	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18031	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chrX.153095520.+	chrX	153095520	153095521	+	0	NA	"intron (NM_032512, intron 1 of 7)"	CpG	483	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr5.140744395.-	chr5	140744395	140744396	-	0	NA	"exon (NM_018918, exon 1 of 4)"	"exon (NM_018918, exon 1 of 4)"	-497	NM_018918	56110	Hs.368160	NM_018918	ENSG00000253485	PCDHGA5	CDH-GAMMA-A5|ME3|PCDH-GAMMA-A5	"protocadherin gamma subfamily A, 5"	protein-coding
chr4.8834816.+	chr4	8834816	8834817	+	0	NA	Intergenic	Intergenic	38727	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr15.92465259.-	chr15	92465259	92465260	-	0	NA	"intron (NM_001145044, intron 2 of 10)"	AluSx1|SINE|Alu	-68321	NM_013272	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr17.40536621.-	chr17	40536621	40536622	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3784	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr10.73748686.+	chr10	73748686	73748687	+	0	NA	"intron (NM_004273, intron 1 of 2)"	AluSz|SINE|Alu	24566	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
chr19.12606226.-	chr19	12606226	12606227	-	0	NA	Intergenic	CpG	10594	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr19.11060593.-	chr19	11060593	11060594	-	0	NA	Intergenic	AluY|SINE|Alu	11005	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr21.46686968.-	chr21	46686968	46686969	-	0	NA	"3' UTR (NM_015227, exon 8 of 8)"	"3' UTR (NM_015227, exon 8 of 8)"	-20843	NM_133635	23275	Hs.592164	NM_133634	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
chr11.71934826.+	chr11	71934826	71934827	+	0	NA	Intergenic	CpG	-1056	NM_001567	3636	Hs.523875	NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding
chr13.109793138.+	chr13	109793138	109793139	+	0	NA	"exon (NM_015011, exon 32 of 35)"	"exon (NM_015011, exon 32 of 35)"	26513	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	miscRNA
chr5.14460439.+	chr5	14460439	14460440	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121452	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr20.20772499.-	chr20	20772499	20772500	-	0	NA	Intergenic	LTR16A2|LTR|ERVL	79233	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr13.48030583.-	chr13	48030583	48030584	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544879	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr18.11867640.+	chr18	11867640	11867641	+	0	NA	"intron (NM_182978, intron 8 of 11)"	AluYk4|SINE|Alu	10203	NM_001261444	2774	Hs.741448	NM_002071	ENSG00000141404	GNAL	-	"guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type"	protein-coding
chr2.127977803.-	chr2	127977803	127977804	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	14460	NM_001001665	339761	Hs.407639	NM_001001665	ENSG00000186684	CYP27C1	-	"cytochrome P450, family 27, subfamily C, polypeptide 1"	protein-coding
chr19.1252670.-	chr19	1252670	1252671	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4118	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr8.27509115.+	chr8	27509115	27509116	+	0	NA	"exon (NM_182826, exon 3 of 6)"	"exon (NM_182826, exon 3 of 6)"	17538	NM_016240	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	"scavenger receptor class A, member 3"	protein-coding
chr5.1067290.-	chr5	1067290	1067291	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4201	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr11.44361787.-	chr11	44361787	44361788	-	0	NA	Intergenic	AluJb|SINE|Alu	30071	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr16.86063311.-	chr16	86063311	86063312	-	0	NA	Intergenic	Intergenic	-130537	NM_002163	3394	Hs.137427	NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IRF-8	interferon regulatory factor 8	protein-coding
chr11.1122347.-	chr11	1122347	1122348	-	0	NA	Intergenic	Intergenic	-47472	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr5.138488119.-	chr5	138488119	138488120	-	0	NA	"intron (NM_022464, intron 1 of 9)"	AluSx1|SINE|Alu	-45946	NM_022464	64374	Hs.483521	NM_001037633	ENSG00000120725	SIL1	BAP|MSS|ULG5	"SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)"	protein-coding
chr17.9202895.-	chr17	9202895	9202896	-	0	NA	"intron (NM_004853, intron 7 of 7)"	AluY|SINE|Alu	-276380	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
chr5.148988212.+	chr5	148988212	148988213	+	0	NA	"intron (NM_001001669, intron 3 of 12)"	AluSg|SINE|Alu	27077	NM_001001669	389337	Hs.256206	NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding
chr9.127626620.-	chr9	127626620	127626621	-	0	NA	Intergenic	AluSx|SINE|Alu	2380	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr2.178129402.+	chr2	178129402	178129403	+	0	NA	promoter-TSS (NM_001145412)	promoter-TSS (NM_001145412)	457	NM_006164	4780	Hs.744006	NM_001145412	ENSG00000116044	NFE2L2	NRF2	nuclear factor (erythroid-derived 2)-like 2	protein-coding
chr9.34116718.+	chr9	34116718	34116719	+	0	NA	"intron (NM_015397, intron 2 of 8)"	AluSx1|SINE|Alu	10053	NM_015397	25853	Hs.741270	NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
chr6.170055415.-	chr6	170055415	170055416	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46744	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr22.34378917.+	chr22	34378917	34378918	+	0	NA	Intergenic	AluSx1|SINE|Alu	-62501	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr16.443592.-	chr16	443592	443593	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3600	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr19.4065805.+	chr19	4065805	4065806	+	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	1011	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr8.104427095.-	chr8	104427095	104427096	-	0	NA	"non-coding (NR_102337, exon 1 of 6)"	"non-coding (NR_102337, exon 1 of 6)"	-153	NM_015420	25879	Hs.532265	NM_015420	ENSG00000164934	DCAF13	GM83|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
chr7.5355890.-	chr7	5355890	5355891	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33329	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr16.81731182.+	chr16	81731182	81731183	+	0	NA	"intron (NM_198390, intron 14 of 20)"	MIR3|SINE|MIR	32223	NR_045112	100129617	Hs.657151	NR_045112		LOC100129617	-	uncharacterized LOC100129617	miscRNA
chr1.3022475.+	chr1	3022475	3022476	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22064	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr3.22099207.-	chr3	22099207	22099208	-	0	NA	Intergenic	AluSx|SINE|Alu	306391	NM_024697	79750	Hs.21026	NM_024697		ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
chr7.22705286.-	chr7	22705286	22705287	-	0	NA	Intergenic	CpG	61480	NM_000600	3569	Hs.654458	NM_000600	ENSG00000136244	IL6	BSF2|HGF|HSF|IFNB2|IL-6	"interleukin 6 (interferon, beta 2)"	protein-coding
chr10.69822248.-	chr10	69822248	69822249	-	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	-12855	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr3.71746109.+	chr3	71746109	71746110	+	0	NA	"intron (NM_001134650, intron 4 of 7)"	AluY|SINE|Alu	28417	NM_001134651	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr16.67194365.+	chr16	67194365	67194366	+	0	NA	promoter-TSS (NM_003789)	promoter-TSS (NM_003789)	474	NM_018378	55336	Hs.710714	NM_018378	ENSG00000135722	FBXL8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding
chr2.21484582.+	chr2	21484582	21484583	+	0	NA	Intergenic	Intergenic	-217637	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr2.241363395.-	chr2	241363395	241363396	-	0	NA	Intergenic	Intergenic	11720	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr7.2716327.-	chr7	2716327	2716328	-	0	NA	Intergenic	Intergenic	2836	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr5.2371502.+	chr5	2371502	2371503	+	0	NA	Intergenic	Intergenic	380267	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr5.64597678.-	chr5	64597678	64597679	-	0	NA	"intron (NM_197941, intron 9 of 24)"	AluSx|SINE|Alu	-180026	NM_197941	11174	Hs.482291	NM_197941	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	"ADAM metallopeptidase with thrombospondin type 1 motif, 6"	protein-coding
chr2.48010456.-	chr2	48010456	48010457	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-235	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr11.17160905.-	chr11	17160905	17160906	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30449	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr3.8635199.+	chr3	8635199	8635200	+	0	NA	Intergenic	Intergenic	21731	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr11.2051328.-	chr11	2051328	2051329	-	0	NA	Intergenic	Intergenic	32263	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr9.10974540.-	chr9	10974540	10974541	-	0	NA	Intergenic	L1PBa|LINE|L1	361817	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.70416488.-	chr2	70416488	70416489	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1663	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr5.158420141.+	chr5	158420141	158420142	+	0	NA	"intron (NM_024007, intron 6 of 15)"	AluSz|SINE|Alu	106647	NM_024007	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
chr9.11182.-	chr9	11182	11183	-	0	NA	promoter-TSS (NR_051986)	promoter-TSS (NR_051986)	805	NR_051986	100287596	Hs.719844	NR_051986		DDX11L5	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5	pseudo
chr2.231631471.+	chr2	231631471	231631472	+	0	NA	"intron (NM_016289, intron 2 of 8)"	AluJb|SINE|Alu	53208	NM_001130849	51719	Hs.603930	NM_001130849	ENSG00000135932	CAB39	MO25	calcium binding protein 39	protein-coding
chr7.157130142.-	chr7	157130142	157130143	-	0	NA	"intron (NM_058246, intron 1 of 9)"	CpG	-431	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr1.2478117.-	chr1	2478117	2478118	-	0	NA	Intergenic	CpG	-6167	NR_026927	115110	Hs.132272	NR_026927		LOC115110	-	uncharacterized LOC115110	miscRNA
chr3.36494791.+	chr3	36494791	36494792	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72694	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr22.51010998.+	chr22	51010998	51010999	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5508	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr19.58963040.+	chr19	58963040	58963041	+	0	NA	promoter-TSS (NM_207395)	promoter-TSS (NM_207395)	69	NM_207395	388569	Hs.186970	NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
chr17.78234215.-	chr17	78234215	78234216	-	0	NA	promoter-TSS (NM_020954)	promoter-TSS (NM_020954)	445	NM_001256071	57674	Hs.743310	NM_001256071	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
chr2.232202171.-	chr2	232202171	232202172	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluSx|SINE|Alu	25248	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr2.220355197.+	chr2	220355197	220355198	+	0	NA	"exon (NM_005876, exon 37 of 41)"	"exon (NM_005876, exon 37 of 41)"	-8390	NM_013335	29926	Hs.27059	NM_013335	ENSG00000144591	GMPPA	-	GDP-mannose pyrophosphorylase A	protein-coding
chr6.91006876.+	chr6	91006876	91006877	+	0	NA	promoter-TSS (NM_021813)	promoter-TSS (NM_021813)	-249	NM_001170794	60468	Hs.269764	NM_001170794	ENSG00000112182	BACH2	BTBD25	"BTB and CNC homology 1, basic leucine zipper transcription factor 2"	protein-coding
chr1.101786823.-	chr1	101786823	101786824	-	0	NA	Intergenic	AluY|SINE|Alu	-19628	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr7.821275.-	chr7	821275	821276	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33919	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr19.2340030.-	chr19	2340030	2340031	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11401	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr11.2213885.-	chr11	2213885	2213886	-	0	NA	Intergenic	Intergenic	-19592	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr19.40938942.+	chr19	40938942	40938943	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7010	NM_013376	29950	Hs.269898	NM_013376		SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding
chr12.132623226.+	chr12	132623226	132623227	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5654	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr19.6945084.-	chr19	6945084	6945085	-	0	NA	Intergenic	AluY|SINE|Alu	-45773	NR_024075	326342	Hs.688043	NR_024075	ENSG00000268758	EMR4P	EMR4|FIRE|GPR127|PGR16	"egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene"	pseudo
chr3.47744613.+	chr3	47744613	47744614	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78792	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr7.100963635.+	chr7	100963635	100963636	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1458	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr8.128328701.+	chr8	128328701	128328702	+	0	NA	Intergenic	Intergenic	-99156	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr19.12035973.+	chr19	12035973	12035974	+	0	NA	promoter-TSS (NM_144566)	promoter-TSS (NM_144566)	90	NM_144566	90592	Hs.528486	NM_001271847	ENSG00000196757	ZNF700	-	zinc finger protein 700	protein-coding
chr21.44872334.-	chr21	44872334	44872335	-	0	NA	"non-coding (NR_026960, exon 2 of 3)"	"non-coding (NR_026960, exon 2 of 3)"	-2430	NR_026960	284836	Hs.146127	NR_026960	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	miscRNA
chr14.102109494.+	chr14	102109494	102109495	+	0	NA	Intergenic	AluY|SINE|Alu	81806	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr9.126145894.-	chr9	126145894	126145895	-	0	NA	"intron (NM_020946, intron 21 of 21)"	"intron (NM_020946, intron 21 of 21)"	-18988	NR_030332	693186		NR_030332		MIR601	MIRN601|hsa-mir-601	microRNA 601	miscRNA
chr20.43542948.-	chr20	43542948	43542949	-	0	NA	"intron (NM_001124756, intron 2 of 14)"	AluY|SINE|Alu	-4245	NM_001124756	80336	Hs.641481	NM_001124756	ENSG00000101104	PABPC1L	C20orf119|PABPC1L1|dJ1069P2.3|ePAB	"poly(A) binding protein, cytoplasmic 1-like"	protein-coding
chr19.795682.-	chr19	795682	795683	-	0	NA	Intergenic	Intergenic	1710	NM_031991	5725	Hs.172550	NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
chr9.120507364.-	chr9	120507364	120507365	-	0	NA	Intergenic	CpG	-40911	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr6.97372264.-	chr6	97372264	97372265	-	0	NA	promoter-TSS (NM_052904)	promoter-TSS (NM_052904)	232	NM_052904	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch-like family member 32	protein-coding
chr11.66997303.+	chr11	66997303	66997304	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10203	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr13.48030582.-	chr13	48030582	48030583	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544880	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr1.241050655.-	chr1	241050655	241050656	-	0	NA	"intron (NM_002924, intron 6 of 17)"	AluY|SINE|Alu	244917	NR_036069	100422856		NR_036069	ENSG00000265831	MIR3123	-	microRNA 3123	miscRNA
chr20.61021234.-	chr20	61021234	61021235	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18605	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr6.105414633.-	chr6	105414633	105414634	-	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	-9710	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr9.10974649.-	chr9	10974649	10974650	-	0	NA	Intergenic	L1PBa|LINE|L1	361926	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr5.126458494.-	chr5	126458494	126458495	-	0	NA	Intergenic	AluY|SINE|Alu	49310	NM_001164479	401207	Hs.49573	NM_001164478	ENSG00000164241	C5orf63	YDR286C	chromosome 5 open reading frame 63	protein-coding
chr9.6559770.-	chr9	6559770	6559771	-	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	-85922	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr19.51005306.-	chr19	51005306	51005307	-	0	NA	Intergenic	Intergenic	-9110	NM_138334	126119	Hs.737597	NM_001270639	ENSG00000161677	JOSD2	-	Josephin domain containing 2	protein-coding
chr19.50803070.-	chr19	50803070	50803071	-	0	NA	"intron (NM_001145809, intron 39 of 42)"	AluSz|SINE|Alu	-29564	NM_004977	3748	Hs.467146	NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	"potassium voltage-gated channel, Shaw-related subfamily, member 3"	protein-coding
chr9.128842644.-	chr9	128842644	128842645	-	0	NA	Intergenic	LTR7|LTR|ERV1	246479	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr22.20137575.-	chr22	20137575	20137576	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	144	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr9.35846404.-	chr9	35846404	35846405	-	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	13867	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chrX.15337006.-	chrX	15337006	15337007	-	0	NA	TTS (NM_002641)	TTS (NM_002641)	3260	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr1.153645471.+	chr1	153645471	153645472	+	0	NA	Intergenic	Intergenic	-1967	NM_004515	3608	Hs.75117	NM_001267809	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
chr17.26550615.+	chr17	26550615	26550616	+	0	NA	Intergenic	SVA_F|Other|Other	-2974	NR_003064	23615	Hs.157195	NR_003064	ENSG00000237575	PYY2	-	"peptide YY, 2 (pseudogene)"	pseudo
chr11.64374991.-	chr11	64374991	64374992	-	0	NA	"exon (NM_015080, exon 23 of 23)"	"exon (NM_015080, exon 23 of 23)"	-16709	NM_001276327	116085	Hs.700182	NM_001276326	ENSG00000197891	SLC22A12	OAT4L|RST|URAT1	"solute carrier family 22 (organic anion/urate transporter), member 12"	protein-coding
chr7.45853944.-	chr7	45853944	45853945	-	0	NA	Intergenic	Intergenic	45327	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr22.38531065.+	chr22	38531065	38531066	+	0	NA	"exon (NM_001199562, exon 6 of 16)"	"exon (NM_001199562, exon 6 of 16)"	-24389	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr16.87867480.-	chr16	87867480	87867481	-	0	NA	"intron (NM_003486, intron 9 of 9)"	AluSz|SINE|Alu	-35620	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr2.203038199.-	chr2	203038199	203038200	-	0	NA	"intron (NM_001277372, intron 15 of 21)"	AluSp|SINE|Alu	-65123	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr20.13660693.+	chr20	13660693	13660694	+	0	NA	Intergenic	AluY|SINE|Alu	-41110	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr16.87360625.-	chr16	87360625	87360626	-	0	NA	Intergenic	Intergenic	9599	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr15.83365810.-	chr15	83365810	83365811	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12825	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr11.64974053.+	chr11	64974053	64974054	+	0	NA	"exon (NM_001198869, exon 13 of 22)"	"exon (NM_001198869, exon 13 of 22)"	-7258	NR_033396	440044	Hs.532372	NM_001004326		SLC22A20	Oat6	"solute carrier family 22, member 20"	protein-coding
chr11.1476565.+	chr11	1476565	1476566	+	0	NA	"intron (NM_003957, intron 16 of 19)"	"intron (NM_003957, intron 16 of 19)"	31383	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr13.37006105.-	chr13	37006105	37006106	-	0	NA	promoter-TSS (NM_003914)	promoter-TSS (NM_003914)	-138	NM_001111047	8900	Hs.417050	NM_001111045	ENSG00000133101	CCNA1	-	cyclin A1	protein-coding
chr1.163468395.-	chr1	163468395	163468396	-	0	NA	Intergenic	SVA_A|Other|Other	-176672	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr2.231536950.+	chr2	231536950	231536951	+	0	NA	Intergenic	AluY|SINE|Alu	28294	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LOC151475	-	uncharacterized LOC151475	miscRNA
chr1.101786820.-	chr1	101786820	101786821	-	0	NA	Intergenic	AluY|SINE|Alu	-19631	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr14.105618909.+	chr14	105618909	105618910	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16252	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr11.32456557.-	chr11	32456557	32456558	-	0	NA	promoter-TSS (NR_023920)	promoter-TSS (NR_023920)	-524	NM_024424	7490	Hs.591980	NM_000378	ENSG00000184937	WT1	AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33	Wilms tumor 1	protein-coding
chr1.21714336.-	chr1	21714336	21714337	-	0	NA	Intergenic	SVA_F|Other|Other	42302	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr18.77540522.-	chr18	77540522	77540523	-	0	NA	Intergenic	Intergenic	83146	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr7.1147477.+	chr7	1147477	1147478	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19754	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr7.77315622.-	chr7	77315622	77315623	-	0	NA	"intron (NR_038361, intron 1 of 2)"	AluY|SINE|Alu	10121	NM_198467	222194	Hs.592289	NM_198467	ENSG00000187257	RSBN1L	-	round spermatid basic protein 1-like	protein-coding
chr7.157387003.-	chr7	157387003	157387004	-	0	NA	"intron (NM_130842, intron 16 of 21)"	"intron (NM_130842, intron 16 of 21)"	19889	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr11.5315870.+	chr11	5315870	5315871	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7306	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr9.90728848.+	chr9	90728848	90728849	+	0	NA	Intergenic	REP522|Satellite|telo	21052	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	"SPATA31 subfamily C, member 2"	protein-coding
chr14.100647480.+	chr14	100647480	100647481	+	0	NA	Intergenic	SVA_D|Other|Other	-21468	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	"delta(4)-desaturase, sphingolipid 2"	protein-coding
chr8.111696900.-	chr8	111696900	111696901	-	0	NA	Intergenic	AluY|SINE|Alu	709941	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr12.56394858.+	chr12	56394858	56394859	+	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	3815	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr4.619384.+	chr4	619384	619385	+	0	NA	promoter-TSS (NM_001145291)	promoter-TSS (NM_001145291)	21	NM_001145291	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr2.224724679.-	chr2	224724679	224724680	-	0	NA	Intergenic	AluSp|SINE|Alu	22360	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr5.141451814.+	chr5	141451814	141451815	+	0	NA	Intergenic	AluSq|SINE|Alu	-36510	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr3.194304679.-	chr3	194304679	194304680	-	0	NA	promoter-TSS (NR_047573)	promoter-TSS (NR_047573)	318	NR_047574	100507297	Hs.586059	NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	miscRNA
chr20.61781848.+	chr20	61781848	61781849	+	0	NA	Intergenic	Intergenic	-28004	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3	microRNA 124-3	miscRNA
chr13.21872272.-	chr13	21872272	21872273	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-8	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chrX.15026742.+	chrX	15026742	15026743	+	0	NA	Intergenic	AluY|SINE|Alu	123329	NM_001177475	158747	Hs.190043	NM_001177475		MOSPD2	-	motile sperm domain containing 2	protein-coding
chr7.36845298.-	chr7	36845298	36845299	-	0	NA	Intergenic	AluJb|SINE|Alu	81144	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr22.46303170.+	chr22	46303170	46303171	+	0	NA	Intergenic	Intergenic	69838	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr7.1798921.-	chr7	1798921	1798922	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50123	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr3.164119709.+	chr3	164119709	164119710	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676574	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr2.14112576.-	chr2	14112576	14112577	-	0	NA	Intergenic	AluY|SINE|Alu	660234	NM_145175	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	"family with sequence similarity 84, member A"	protein-coding
chr9.14830744.-	chr9	14830744	14830745	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51213	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr17.15426417.-	chr17	15426417	15426418	-	0	NA	"intron (NM_145301, intron 5 of 5)"	AluSx3|SINE|Alu	-40528	NR_037924	100533496	Hs.744260	NM_001204478	ENSG00000259024	TVP23C-CDRT4	FAM18B2-CDRT4	TVP23C-CDRT4 readthrough	protein-coding
chr16.74075814.+	chr16	74075814	74075815	+	0	NA	Intergenic	AluY|SINE|Alu	-254859	NM_002811	5713	Hs.440604	NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 7"	protein-coding
chrX.81762797.+	chrX	81762797	81762798	+	0	NA	Intergenic	AluY|SINE|Alu	-1000472	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr22.47523248.+	chr22	47523248	47523249	+	0	NA	"intron (NM_014346, intron 12 of 12)"	AluSx|SINE|Alu	364730	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr1.41916714.-	chr1	41916714	41916715	-	0	NA	Intergenic	Intergenic	-33630	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr1.181058699.-	chr1	181058699	181058700	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1061	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr18.19630089.+	chr18	19630089	19630090	+	0	NA	Intergenic	AluY|SINE|Alu	-119315	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr8.107670090.-	chr8	107670090	107670091	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-54	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr9.16914715.+	chr9	16914715	16914716	+	0	NA	Intergenic	AluY|SINE|Alu	-43929	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr12.114939095.+	chr12	114939095	114939096	+	0	NA	Intergenic	Intergenic	-92848	NM_000192	6910	Hs.381715	NM_000192	ENSG00000089225	TBX5	HOS	T-box 5	protein-coding
chr11.119091814.+	chr11	119091814	119091815	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14828	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr17.7561692.+	chr17	7561692	7561693	+	0	NA	TTS (NM_001678)	TTS (NM_001678)	7438	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr6.5999188.+	chr6	5999188	5999189	+	0	NA	"3' UTR (NM_016588, exon 3 of 3)"	"3' UTR (NM_016588, exon 3 of 3)"	8445	NM_016588	51299	Hs.103291	NM_016588		NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
chr18.21826540.-	chr18	21826540	21826541	-	0	NA	"intron (NM_001242508, intron 3 of 15)"	AluSx|SINE|Alu	-25656	NM_018030	114876	Hs.370725	NM_001242508	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
chr10.102747464.+	chr10	102747464	102747465	+	0	NA	promoter-TSS (NM_032112)	promoter-TSS (NM_032112)	171	NM_001163812	56652	Hs.22678	NM_001163812	ENSG00000107815	C10orf2	ATXN8|IOSCA|MTDPS7|PEO|PEO1|PEOA3|SANDO|SCA8|TWINL	chromosome 10 open reading frame 2	protein-coding
chr1.21892939.-	chr1	21892939	21892940	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57081	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr1.217697512.+	chr1	217697512	217697513	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106897	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr2.125181307.-	chr2	125181307	125181308	-	0	NA	"intron (NM_130773, intron 4 of 23)"	AluY|SINE|Alu	-398443	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr21.34914894.+	chr21	34914894	34914895	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	301	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr13.59346908.-	chr13	59346908	59346909	-	0	NA	Intergenic	AluY|SINE|Alu	-1141119	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr12.115125111.+	chr12	115125111	115125112	+	0	NA	Intergenic	CpG	-3142	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
chr3.42642372.+	chr3	42642372	42642373	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	200	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr4.17548199.+	chr4	17548199	17548200	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-30728	NM_015907	51056	Hs.570791	NM_015907	ENSG00000002549	LAP3	LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
chr14.80915381.-	chr14	80915381	80915382	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	217984	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr14.105618898.+	chr14	105618898	105618899	+	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	16263	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr17.6679493.-	chr17	6679493	6679494	-	0	NA	promoter-TSS (NM_153230)	promoter-TSS (NM_153230)	59	NM_153230	162517	Hs.368364	NM_153230	ENSG00000177294	FBXO39	Fbx39	F-box protein 39	protein-coding
chrX.128371155.-	chrX	128371155	128371156	-	0	NA	Intergenic	AluSq4|SINE|Alu	-286305	NM_139035	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1"	protein-coding
chr15.37172896.+	chr15	37172896	37172897	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5838	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr11.18743353.+	chr11	18743353	18743354	+	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	4424	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr6.168975154.+	chr6	168975154	168975155	+	0	NA	"intron (NM_001166412, intron 7 of 12)"	"intron (NM_001166412, intron 7 of 12)"	133323	NM_001166412	64094	Hs.487200	NM_001166412	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
chr6.170548032.+	chr6	170548032	170548033	+	0	NA	Intergenic	Intergenic	23625	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr9.137588863.-	chr9	137588863	137588864	-	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	-55211	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr2.46059745.+	chr2	46059745	46059746	+	0	NA	"intron (NM_005400, intron 1 of 14)"	AluSx4|SINE|Alu	180702	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	"protein kinase C, epsilon"	protein-coding
chr6.42751368.+	chr6	42751368	42751369	+	0	NA	Intergenic	CpG	-37426	NM_015349	23506	Hs.658033	NM_015349	ENSG00000112624	GLTSCR1L	KIAA0240	GLTSCR1-like	protein-coding
chr18.73357756.-	chr18	73357756	73357757	-	0	NA	Intergenic	L2|LINE|L2	218167	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr1.3342120.+	chr1	3342120	3342121	+	0	NA	"intron (NM_199454, intron 12 of 16)"	CpG	-29027	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr12.50451400.-	chr12	50451400	50451401	-	0	NA	promoter-TSS (NM_001095)	promoter-TSS (NM_001095)	20	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr4.39399517.+	chr4	39399517	39399518	+	0	NA	Intergenic	AluSx|SINE|Alu	-8956	NM_175737	152831	Hs.90756	NM_175737	ENSG00000134962	KLB	BKL	klotho beta	protein-coding
chr7.5703161.-	chr7	5703161	5703162	-	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	-16931	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr7.148968317.-	chr7	148968317	148968318	-	0	NA	"intron (NM_001195220, intron 4 of 5)"	AluY|SINE|Alu	-9055	NM_001195220	100289678	Hs.490512	NM_001195220	ENSG00000204946	ZNF783	-	zinc finger family member 783	protein-coding
chr1.65532932.-	chr1	65532932	65532933	-	0	NA	Intergenic	CpG	8741	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr12.8057428.+	chr12	8057428	8057429	+	0	NA	Intergenic	AluSg7|SINE|Alu	31464	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr2.230314780.+	chr2	230314780	230314781	+	0	NA	"intron (NM_139072, intron 7 of 12)"	AluSg|SINE|Alu	-178723	NM_001100818	55022	Hs.409352	NM_001100818	ENSG00000153823	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
chr16.54578151.+	chr16	54578151	54578152	+	0	NA	Intergenic	AluYa5|SINE|Alu	-257773	NM_024336	79191	Hs.499205	NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
chr10.28591657.+	chr10	28591657	28591658	+	0	NA	Intergenic	CpG	-20590	NM_173496	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	"membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)"	protein-coding
chr17.8061007.+	chr17	8061007	8061008	+	0	NA	Intergenic	AluY|SINE|Alu	-5254	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr17.18755418.-	chr17	18755418	18755419	-	0	NA	Intergenic	AluSp|SINE|Alu	4194	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr15.41787948.+	chr15	41787948	41787949	+	0	NA	"intron (NM_002220, intron 1 of 6)"	CpG	1892	NM_002220	3706	Hs.2722	NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
chr10.71044921.-	chr10	71044921	71044922	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15165	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chrX.153657080.-	chrX	153657080	153657081	-	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	-102	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr21.46408751.+	chr21	46408751	46408752	+	0	NA	Intergenic	Intergenic	5250	NR_033840	727699	Hs.397403	NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	miscRNA
chr19.47628026.-	chr19	47628026	47628027	-	0	NA	Intergenic	AluY|SINE|Alu	6054	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr16.71414331.+	chr16	71414331	71414332	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21715	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr6.170055326.-	chr6	170055326	170055327	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46833	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr12.54218617.+	chr12	54218617	54218618	+	0	NA	Intergenic	AluSp|SINE|Alu	-97310	NM_001143682	57658	Hs.156667	NM_001143682	ENSG00000012822	CALCOCO1	Cocoa|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
chrX.133565030.-	chrX	133565030	133565031	-	0	NA	Intergenic	AluSp|SINE|Alu	29145	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr18.66366080.+	chr18	66366080	66366081	+	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	16273	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr8.144546557.+	chr8	144546557	144546558	+	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	-33955	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr22.46504412.+	chr22	46504412	46504413	+	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	-4217	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr20.17960343.+	chr20	17960343	17960344	+	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	10581	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr6.160985719.-	chr6	160985719	160985720	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53563	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr3.102974060.-	chr3	102974060	102974061	-	0	NA	Intergenic	SVA_D|Other|Other	-820201	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chrX.18849785.-	chrX	18849785	18849786	-	0	NA	Intergenic	AluY|SINE|Alu	58629	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr19.2308265.-	chr19	2308265	2308266	-	0	NA	promoter-TSS (NM_001101391)	promoter-TSS (NM_001101391)	109	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
chr12.30327144.+	chr12	30327144	30327145	+	0	NA	Intergenic	MER11C|LTR|ERVK	-389452	NM_175861	83857	Hs.401954	NM_001193451	ENSG00000133687	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chr11.1218153.-	chr11	1218153	1218154	-	0	NA	Intergenic	Intergenic	26142	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr11.62418845.-	chr11	62418845	62418846	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-1929	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr3.29288093.+	chr3	29288093	29288094	+	0	NA	Intergenic	AluY|SINE|Alu	-34710	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr16.49892628.+	chr16	49892628	49892629	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-798	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr1.10234375.+	chr1	10234375	10234376	+	0	NA	"intron (NM_006048, intron 24 of 26)"	AluSg4|SINE|Alu	-36389	NM_183416	23095	Hs.97858	NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
chr22.39734585.-	chr22	39734585	39734586	-	0	NA	Intergenic	AluSc|SINE|Alu	11369	NM_004711	9145	Hs.216226	NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
chr5.42921837.-	chr5	42921837	42921838	-	0	NA	Intergenic	AluY|SINE|Alu	-97076	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	miscRNA
chr16.4537732.+	chr16	4537732	4537733	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8127	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr5.14460478.+	chr5	14460478	14460479	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121413	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr4.39561488.+	chr4	39561488	39561489	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32029	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr6.1035129.+	chr6	1035129	1035130	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66438	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chrX.133565032.-	chrX	133565032	133565033	-	0	NA	Intergenic	AluSp|SINE|Alu	29143	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr2.21484568.-	chr2	21484568	21484569	-	0	NA	Intergenic	Intergenic	217623	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr9.96447275.+	chr9	96447275	96447276	+	0	NA	Intergenic	Intergenic	108366	NM_005392	5253	Hs.211441	NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E	PHD finger protein 2	protein-coding
chr20.44451697.+	chr20	44451697	44451698	+	0	NA	TTS (NM_003279)	TTS (NM_003279)	4256	NM_003279	7125	Hs.182421	NM_003279	ENSG00000101470	TNNC2	-	troponin C type 2 (fast)	protein-coding
chr5.176075363.-	chr5	176075363	176075364	-	0	NA	"intron (NM_001006616, intron 1 of 8)"	"intron (NM_001006616, intron 1 of 8)"	-975	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chr7.75298487.+	chr7	75298487	75298488	+	0	NA	"intron (NM_001243198, intron 1 of 28)"	AluY|SINE|Alu	69796	NM_005338	3092	Hs.619089	NM_001243198	ENSG00000127946	HIP1	ILWEQ	huntingtin interacting protein 1	protein-coding
chr10.58560876.+	chr10	58560876	58560877	+	0	NA	Intergenic	AluY|SINE|Alu	-439842	NM_001005413	11130	Hs.591363	NM_001005413	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|ZWINT1	"ZW10 interactor, kinetochore protein"	protein-coding
chr17.18785201.+	chr17	18785201	18785202	+	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	16419	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr8.61193867.-	chr8	61193867	61193868	-	0	NA	promoter-TSS (NM_004056)	promoter-TSS (NM_004056)	-87	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chrX.20694437.-	chrX	20694437	20694438	-	0	NA	Intergenic	AluY|SINE|Alu	409687	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr4.26862480.-	chr4	26862480	26862481	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-167	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr15.102029749.+	chr15	102029749	102029750	+	0	NA	"exon (NM_002570, exon 1 of 22)"	"exon (NM_002570, exon 1 of 22)"	438	NM_138323	5046	Hs.665989	NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
chr5.694009.+	chr5	694009	694010	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-499	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr19.30963857.-	chr19	30963857	30963858	-	0	NA	"intron (NM_014717, intron 2 of 4)"	AluSx|SINE|Alu	-100529	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
chr18.38415910.-	chr18	38415910	38415911	-	0	NA	Intergenic	AluY|SINE|Alu	-684651	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr5.2391211.-	chr5	2391211	2391212	-	0	NA	Intergenic	Intergenic	-360558	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr13.79980121.-	chr13	79980121	79980122	-	0	NA	promoter-TSS (NM_022118)	promoter-TSS (NM_022118)	198	NM_022118	64062	Hs.558528	NM_022118	ENSG00000139746	RBM26	ARRS2|C13orf10|RP11-255E21.1|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
chr10.46833208.-	chr10	46833208	46833209	-	0	NA	Intergenic	AluY|SINE|Alu	64433	NR_027632	414241	Hs.594331	NR_027632	ENSG00000165874	FAM35BP	FAM35B|bA38L15.1	"family with sequence similarity 35, member A pseudogene"	pseudo
chr4.1400157.+	chr4	1400157	1400158	+	0	NA	Intergenic	CpG	14817	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr16.28874236.+	chr16	28874236	28874237	+	0	NA	promoter-TSS (NM_001145796)	promoter-TSS (NM_001145796)	-842	NM_001145795	25970	Hs.15744	NM_001145795	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
chrX.91037197.+	chrX	91037197	91037198	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2937	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr7.5973313.-	chr7	5973313	5973314	-	0	NA	"intron (NM_001099697, intron 18 of 20).2"	AluY|SINE|Alu	-34972	NM_015622	51622	Hs.530000	NM_015622	ENSG00000122674	CCZ1	C7orf28A|CCZ1A|H_DJ1163J12.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	protein-coding
chr20.57767042.+	chr20	57767042	57767043	+	0	NA	"exon (NM_178457, exon 1 of 5)"	"exon (NM_178457, exon 1 of 5)"	967	NM_178457	128611	Hs.473204	NM_178457	ENSG00000124203	ZNF831	C20orf174|dJ492J12.1	zinc finger protein 831	protein-coding
chr15.41708254.+	chr15	41708254	41708255	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1048	NM_015138	23168	Hs.511096	NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	"Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)"	protein-coding
chr19.53979656.-	chr19	53979656	53979657	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8667	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr7.128141928.-	chr7	128141928	128141929	-	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	-25145	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr11.120093179.+	chr11	120093179	120093180	+	0	NA	"intron (NM_178507, intron 1 of 3)"	AluSx|SINE|Alu	11432	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr15.37172897.+	chr15	37172897	37172898	+	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	5837	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr19.2271543.+	chr19	2271543	2271544	+	0	NA	"intron (NM_004152, intron 2 of 4)"	"intron (NM_004152, intron 2 of 4)"	2023	NM_004152	4946	Hs.446427	NM_004152	ENSG00000104904	OAZ1	AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
chr12.107215622.-	chr12	107215622	107215623	-	0	NA	"intron (NM_018157, intron 3 of 8)"	AluY|SINE|Alu	47013	NR_040246	100287944	Hs.742087	NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	miscRNA
chr16.87799867.+	chr16	87799867	87799868	+	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	-269	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr9.16855822.+	chr9	16855822	16855823	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	14964	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr7.66386410.+	chr7	66386410	66386411	+	0	NA	"5' UTR (NM_017994, exon 1 of 7)"	"5' UTR (NM_017994, exon 1 of 7)"	207	NM_017994	55069	Hs.488478	NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
chr15.41613150.-	chr15	41613150	41613151	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11669	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr19.42394306.+	chr19	42394306	42394307	+	0	NA	"intron (NM_198977, intron 4 of 27)"	AluJb|SINE|Alu	5860	NM_199002	9138	Hs.631550	NM_004706	ENSG00000076928	ARHGEF1	GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding
chr4.110355124.-	chr4	110355124	110355125	-	0	NA	promoter-TSS (NR_039978)	promoter-TSS (NR_039978)	151	NR_039978	100533182	Hs.518927	NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	miscRNA
chr3.164119728.+	chr3	164119728	164119729	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676555	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr16.924578.+	chr16	924578	924579	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69135	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr2.70199642.+	chr2	70199642	70199643	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10245	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr16.85512927.+	chr16	85512927	85512928	+	0	NA	Intergenic	AluY|SINE|Alu	-132102	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr8.19626763.+	chr8	19626763	19626764	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48155	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr2.191624929.+	chr2	191624929	191624930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	111081	NM_005966	4664	Hs.730686	NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1 (EGR1 binding protein 1)	protein-coding
chr1.156646687.-	chr1	156646687	156646688	-	0	NA	"exon (NM_006617, exon 1 of 4)"	"exon (NM_006617, exon 1 of 4)"	-502	NM_006617	10763	Hs.527971	NM_006617	ENSG00000132688	NES	-	nestin	protein-coding
chr17.2311368.+	chr17	2311368	2311369	+	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	-7110	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr15.83419179.+	chr15	83419179	83419180	+	0	NA	Intergenic	CpG	-5518	NR_003011	677778	Hs.743895	NR_003011	ENSG00000252690	SCARNA15	ACA45	small Cajal body-specific RNA 15	miscRNA
chr2.223468813.-	chr2	223468813	223468814	-	0	NA	"intron (NM_005687, intron 15 of 16)"	AluY|SINE|Alu	-52014	NM_005687	10056	Hs.471452	NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|PheHB|PheRS	"phenylalanyl-tRNA synthetase, beta subunit"	protein-coding
chr17.73615827.+	chr17	73615827	73615828	+	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	-13687	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr3.49036003.-	chr3	49036003	49036004	-	0	NA	"intron (NM_177938, intron 2 of 8)"	"intron (NM_177938, intron 2 of 8)"	8634	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr17.45349559.-	chr17	45349559	45349560	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18351	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr12.31575349.-	chr12	31575349	31575350	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96190	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr7.748447.-	chr7	748447	748448	-	0	NA	"intron (NM_002735, intron 2 of 10)"	AluSg|SINE|Alu	-3714	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr14.21104623.+	chr14	21104623	21104624	+	0	NA	Intergenic	AluSz|SINE|Alu	5227	NM_001001968	341799	Hs.513132	NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	"olfactory receptor, family 6, subfamily S, member 1"	protein-coding
chr6.150275477.+	chr6	150275477	150275478	+	0	NA	Intergenic	CpG	-9666	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr11.107701199.+	chr11	107701199	107701200	+	0	NA	"intron (NM_017515, intron 1 of 7)"	AluY|SINE|Alu	28715	NM_017515	54733	Hs.524014	NM_017515	ENSG00000110660	SLC35F2	HSNOV1	"solute carrier family 35, member F2"	protein-coding
chr17.80333534.+	chr17	80333534	80333535	+	0	NA	TTS (NM_018949)	TTS (NM_018949)	1333	NM_018949	2837	Hs.192720	NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
chr16.30674112.-	chr16	30674112	30674113	-	0	NA	Intergenic	Intergenic	1666	NM_001105079	64319	Hs.247186	NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
chr1.10727880.+	chr1	10727880	10727881	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128853	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr14.84437075.+	chr14	84437075	84437076	+	0	NA	Intergenic	AluY|SINE|Alu	-1559413	NM_013231	23768	Hs.744139	NM_013231	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chr7.155834404.-	chr7	155834404	155834405	-	0	NA	Intergenic	Intergenic	229437	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr12.100804198.+	chr12	100804198	100804199	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53341	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr20.62108061.+	chr20	62108061	62108062	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4068	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr5.159429708.+	chr5	159429708	159429709	+	0	NA	Intergenic	AluSz|SINE|Alu	-6472	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr10.94759573.+	chr10	94759573	94759574	+	0	NA	"intron (NM_001013848, intron 19 of 21)"	AluSx1|SINE|Alu	-61448	NM_183374	340665	Hs.369993	NM_183374	ENSG00000187553	CYP26C1	FFDD4	"cytochrome P450, family 26, subfamily C, polypeptide 1"	protein-coding
chr19.4065763.-	chr19	4065763	4065764	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1053	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr10.59080724.+	chr10	59080724	59080725	+	0	NA	Intergenic	AluY|SINE|Alu	-16405	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr5.1137785.+	chr5	1137785	1137786	+	0	NA	Intergenic	Intergenic	-25613	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr14.105158923.+	chr14	105158923	105158924	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2980	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr3.195498054.-	chr3	195498054	195498055	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40790	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr5.57859397.-	chr5	57859397	57859398	-	0	NA	Intergenic	SVA_A|Other|Other	19542	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr1.217394779.-	chr1	217394779	217394780	-	0	NA	Intergenic	AluSq2|SINE|Alu	83682	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr18.20716039.-	chr18	20716039	20716040	-	0	NA	"exon (NM_001100619, exon 1 of 10)"	"exon (NM_001100619, exon 1 of 10)"	-312	NM_001100619	91768	Hs.11108	NM_001100619	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
chr8.144503761.-	chr8	144503761	144503762	-	0	NA	Intergenic	CpG	-8841	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr3.109059744.+	chr3	109059744	109059745	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3325	NM_018189	55211	Hs.317659	NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
chr4.8396807.+	chr4	8396807	8396808	+	0	NA	"intron (NM_003501, intron 9 of 17)"	"intron (NM_003501, intron 9 of 17)"	45645	NM_001101667	8310	Hs.479122	NM_001101667	ENSG00000087008	ACOX3	-	"acyl-CoA oxidase 3, pristanoyl"	protein-coding
chr3.170641243.-	chr3	170641243	170641244	-	0	NA	Intergenic	SVA_C|Other|Other	14817	NM_020390	56648	Hs.164144	NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chr4.1723285.-	chr4	1723285	1723286	-	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	-68	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr17.4432438.+	chr17	4432438	4432439	+	0	NA	"intron (NM_001124758, intron 3 of 12)"	AluSg7|SINE|Alu	26243	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr21.37627713.-	chr21	37627713	37627714	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64774	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr17.73615660.-	chr17	73615660	73615661	-	0	NA	"intron (NR_003587, intron 43 of 60)"	"intron (NR_003587, intron 43 of 60)"	13854	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr11.86869676.+	chr11	86869676	86869677	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	120790	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr2.19132836.+	chr2	19132836	19132837	+	0	NA	Intergenic	AluYk4|SINE|Alu	-361990	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr9.34329768.+	chr9	34329768	34329769	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	264	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr20.33283575.-	chr20	33283575	33283576	-	0	NA	Intergenic	AluY|SINE|Alu	8573	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr15.41787261.+	chr15	41787261	41787262	+	0	NA	"intron (NM_002220, intron 1 of 6)"	CpG	1205	NM_002220	3706	Hs.2722	NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
chr7.1580049.-	chr7	1580049	1580050	-	0	NA	"3' UTR (NM_002360, exon 3 of 3)"	"3' UTR (NM_002360, exon 3 of 3)"	-9681	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr12.56394821.+	chr12	56394821	56394822	+	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	3778	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr4.989159.+	chr4	989159	989160	+	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	-1935	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr7.1474525.-	chr7	1474525	1474526	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24584	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr8.29136392.+	chr8	29136392	29136393	+	0	NA	Intergenic	AluSz|SINE|Alu	-15782	NM_015254	23303	Hs.444767	NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
chr12.112407388.-	chr12	112407388	112407389	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43635	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr6.134540765.+	chr6	134540765	134540766	+	0	NA	"intron (NM_001143676, intron 2 of 13)"	AluSp|SINE|Alu	-41755	NM_001143677	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr10.74059490.+	chr10	74059490	74059491	+	0	NA	Intergenic	AluSz6|SINE|Alu	25813	NM_019058	54541	Hs.523012	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
chr2.177021139.+	chr2	177021139	177021140	+	0	NA	Intergenic	Intergenic	5026	NM_014621	3233	Hs.591609	NM_014621	ENSG00000170166	HOXD4	HHO.C13|HOX-5.1|HOX4|HOX4B|Hox-4.2	homeobox D4	protein-coding
chr4.8913689.+	chr4	8913689	8913690	+	0	NA	Intergenic	Intergenic	-37788	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr20.62065190.+	chr20	62065190	62065191	+	0	NA	"exon (NM_172107, exon 8 of 17)"	"exon (NM_172107, exon 8 of 17)"	38803	NM_004518	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr10.24476743.+	chr10	24476743	24476744	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20977	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr22.24237218.+	chr22	24237218	24237219	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	653	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr13.45945081.+	chr13	45945081	45945082	+	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	29601	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr11.3224529.+	chr11	3224529	3224530	+	0	NA	Intergenic	CpG	-15033	NR_027138	283303	Hs.151154	NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	miscRNA
chr13.111268279.-	chr13	111268279	111268280	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-348	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr12.1044015.+	chr12	1044015	1044016	+	0	NA	"intron (NM_134424, intron 1 of 11)"	AluSx1|SINE|Alu	14848	NM_134424	5893	Hs.410355	NM_134424	ENSG00000002016	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
chr16.31932473.-	chr16	31932473	31932474	-	0	NA	Intergenic	AluY|SINE|Alu	-47394	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr5.86116425.-	chr5	86116425	86116426	-	0	NA	Intergenic	AluSp|SINE|Alu	-200111	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr1.28003889.-	chr1	28003889	28003890	-	0	NA	Intergenic	AluY|SINE|Alu	5165	NM_002038	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr1.43473173.-	chr1	43473173	43473174	-	0	NA	Intergenic	CpG	48326	NM_006516	6513	Hs.473721	NM_006516		SLC2A1	DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED	"solute carrier family 2 (facilitated glucose transporter), member 1"	protein-coding
chr16.29422163.+	chr16	29422163	29422164	+	0	NA	Intergenic	AluSx|SINE|Alu	-38503	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr9.14830646.-	chr9	14830646	14830647	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51115	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr14.106165454.+	chr14	106165454	106165455	+	0	NA	Intergenic	Intergenic	-26310	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	"ELK2A, member of ETS oncogene family, pseudogene"	pseudo
chr17.21902016.+	chr17	21902016	21902017	+	0	NA	Intergenic	SST1|Satellite|centr	-2046	NR_027084	284124	Hs.310247	NR_027084		FLJ36000	-	uncharacterized FLJ36000	miscRNA
chrX.141491560.-	chrX	141491560	141491561	-	0	NA	Intergenic	AluY|SINE|Alu	198484	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr6.42946526.-	chr6	42946526	42946527	-	0	NA	"exon (NM_000287, exon 1 of 17)"	"exon (NM_000287, exon 1 of 17)"	-455	NM_000287	5190	Hs.656425	NM_000287	ENSG00000124587	PEX6	PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
chr17.78559352.-	chr17	78559352	78559353	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40727	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chrX.70257822.-	chrX	70257822	70257823	-	0	NA	Intergenic	AluSx|SINE|Alu	-30476	NM_001256188	29934	Hs.260750	NM_001256185	ENSG00000147164	SNX12	-	sorting nexin 12	protein-coding
chr12.100804240.+	chr12	100804240	100804241	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53383	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr7.155246424.+	chr7	155246424	155246425	+	0	NA	Intergenic	CpG	-4400	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr16.57680124.+	chr16	57680124	57680125	+	0	NA	"intron (NM_001145770, intron 2 of 14)"	"intron (NM_001145770, intron 2 of 14)"	6917	NM_001145774	9289	Hs.513633	NM_001145770	ENSG00000205336	GPR56	BFPP|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
chr11.67955479.+	chr11	67955479	67955480	+	0	NA	"intron (NM_016028, intron 2 of 9)"	"intron (NM_016028, intron 2 of 9)"	25305	NM_017635	51111	Hs.632120	NM_016028	ENSG00000110066	SUV420H1	CGI85|KMT5B	suppressor of variegation 4-20 homolog 1 (Drosophila)	protein-coding
chr15.56917210.+	chr15	56917210	56917211	+	0	NA	Intergenic	AluSq2|SINE|Alu	108577	NM_017661	54816	Hs.511477	NM_001002843	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
chr1.42522872.-	chr1	42522872	42522873	-	0	NA	Intergenic	AluY|SINE|Alu	21276	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr2.71562022.-	chr2	71562022	71562023	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3137	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr2.9551660.-	chr2	9551660	9551661	-	0	NA	"intron (NM_022334, intron 4 of 5)"	AluSx3|SINE|Alu	-11983	NM_004763	9270	Hs.467662	NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
chr12.131551496.-	chr12	131551496	131551497	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98060	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr17.59482738.+	chr17	59482738	59482739	+	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	5481	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr19.58125539.-	chr19	58125539	58125540	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	291	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr2.48010418.-	chr2	48010418	48010419	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-197	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr8.144547111.-	chr8	144547111	144547112	-	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	34509	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr22.21378664.+	chr22	21378664	21378665	+	0	NA	"intron (NM_001159554, intron 8 of 11)"	AluY|SINE|Alu	8183	NM_004173	6545	Hs.197116	NM_004173	ENSG00000099960	SLC7A4	CAT-4|CAT4|HCAT3|VH	"solute carrier family 7 (orphan transporter), member 4"	protein-coding
chr10.103852113.+	chr10	103852113	103852114	+	0	NA	Intergenic	AluSc|SINE|Alu	22610	NM_003893	8861	Hs.454418	NM_001113407	ENSG00000198728	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
chr16.544887.-	chr16	544887	544888	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20037	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr14.24785819.+	chr14	24785819	24785820	+	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	3506	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr1.117312775.-	chr1	117312775	117312776	-	0	NA	TTS (NM_001767)	TTS (NM_001767)	-15689	NM_001767	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
chr17.70877074.+	chr17	70877074	70877075	+	0	NA	"intron (NM_139177, intron 5 of 9)"	AluY|SINE|Alu	211779	NM_139177	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr9.133788042.+	chr9	133788042	133788043	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18817	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr2.120775615.-	chr2	120775615	120775616	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4830	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr1.31517124.-	chr1	31517124	31517125	-	0	NA	"intron (NM_014676, intron 2 of 21)"	AluYf4|SINE|Alu	-21440	NM_001020658	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr14.106358767.-	chr14	106358767	106358768	-	0	NA	Intergenic	Intergenic	25071	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr2.172225739.-	chr2	172225739	172225740	-	0	NA	"intron (NM_024770, intron 2 of 9)"	AluY|SINE|Alu	65022	NM_025000	80067	Hs.659439	NM_001164821	ENSG00000115827	DCAF17	C2orf37	DDB1 and CUL4 associated factor 17	protein-coding
chr15.92290002.-	chr15	92290002	92290003	-	0	NA	Intergenic	AluY|SINE|Alu	106936	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr15.90328012.+	chr15	90328012	90328013	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8423	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr2.127835893.+	chr2	127835893	127835894	+	0	NA	"intron (NM_139351, intron 1 of 12)"	L2b|LINE|L2	29010	NM_139343	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
chr18.73357747.-	chr18	73357747	73357748	-	0	NA	Intergenic	L2|LINE|L2	218158	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr2.230579940.+	chr2	230579940	230579941	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-654	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr8.61460861.-	chr8	61460861	61460862	-	0	NA	"intron (NM_001242644, intron 1 of 6)"	SVA_F|Other|Other	-31392	NM_001242644	5862	Hs.369017	NM_001242644	ENSG00000104388	RAB2A	LHX|RAB2	"RAB2A, member RAS oncogene family"	protein-coding
chr2.242500483.-	chr2	242500483	242500484	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1925	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr1.228733836.-	chr1	228733836	228733837	-	0	NA	Intergenic	HSAT4|Satellite|centr	46558	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr11.64774852.+	chr11	64774852	64774853	+	0	NA	Intergenic	AluSz|SINE|Alu	-6733	NM_001667	402	Hs.502836	NM_001199745	ENSG00000213465	ARL2	ARFL2	ADP-ribosylation factor-like 2	protein-coding
chr8.107670079.-	chr8	107670079	107670080	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-43	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr11.1388668.+	chr11	1388668	1388669	+	0	NA	Intergenic	AluY|SINE|Alu	-22461	NM_003957	9024	Hs.170819	NM_001256627	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|STK29	BR serine/threonine kinase 2	protein-coding
chr3.43663689.-	chr3	43663689	43663690	-	0	NA	promoter-TSS (NM_001204831)	promoter-TSS (NM_001204831)	129	NM_001204831	55129	Hs.656657	NM_001204831	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
chr15.75494199.+	chr15	75494199	75494200	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-22	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr7.5257574.+	chr7	5257574	5257575	+	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	3674	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr22.38336361.+	chr22	38336361	38336362	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13293	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr3.82554752.-	chr3	82554752	82554753	-	0	NA	Intergenic	MER52A|LTR|ERV1	743802	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr17.44929583.+	chr17	44929583	44929584	+	0	NA	"intron (NM_003396, intron 1 of 3)"	CpG	615	NM_003396	7484	Hs.326420	NM_003396	ENSG00000158955	WNT9B	WNT14B|WNT15	"wingless-type MMTV integration site family, member 9B"	protein-coding
chrX.129231033.-	chrX	129231033	129231034	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13442	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr19.1969432.-	chr19	1969432	1969433	-	0	NA	"intron (NM_001319, intron 1 of 11)"	"intron (NM_001319, intron 1 of 11)"	14884	NR_033400	255193	Hs.374717	NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	miscRNA
chr9.26820683.+	chr9	26820683	26820684	+	0	NA	Intergenic	AluY|SINE|Alu	72143	NM_024828	79886	Hs.178357	NM_001167575	ENSG00000120159	CAAP1	C9orf82|CAAP|RP11-337A23.1	caspase activity and apoptosis inhibitor 1	protein-coding
chr19.17585598.+	chr19	17585598	17585599	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSp|SINE|Alu	4298	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr2.90482946.+	chr2	90482946	90482947	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1365029	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr5.28303446.-	chr5	28303446	28303447	-	0	NA	Intergenic	AluY|SINE|Alu	623531	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr22.43718242.+	chr22	43718242	43718243	+	0	NA	"intron (NM_173050, intron 2 of 21)"	AluSc8|SINE|Alu	21152	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr7.394839.+	chr7	394839	394840	+	0	NA	Intergenic	Intergenic	-24552	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr11.118672024.+	chr11	118672024	118672025	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10052	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr15.93372491.+	chr15	93372491	93372492	+	0	NA	Intergenic	AluSg|SINE|Alu	33777	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr2.114361289.-	chr2	114361289	114361290	-	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	-5	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr9.138663004.-	chr9	138663004	138663005	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	CpG-27303	-68973	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr11.2213973.-	chr11	2213973	2213974	-	0	NA	Intergenic	Intergenic	-19680	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr5.65892709.+	chr5	65892709	65892710	+	0	NA	"exon (NM_001164664, exon 1 of 29)"	"exon (NM_001164664, exon 1 of 29)"	533	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr21.43109589.-	chr21	43109589	43109590	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10127	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr1.10799291.+	chr1	10799291	10799292	+	0	NA	"intron (NM_001079843, intron 2 of 20)"	"intron (NM_001079843, intron 2 of 20)"	57442	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr1.217697529.-	chr1	217697529	217697530	-	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	-106880	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr6.25752954.+	chr6	25752954	25752955	+	0	NA	Intergenic	AluY|SINE|Alu	-1973	NM_005495	10050	Hs.282931	NM_005495	ENSG00000146039	SLC17A4	KAIA2138	"solute carrier family 17 (sodium phosphate), member 4"	protein-coding
chr12.49163976.+	chr12	49163976	49163977	+	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	1844	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr2.69337784.-	chr2	69337784	69337785	-	0	NA	"intron (NM_018153, intron 10 of 12)"	AluY|SINE|Alu	-6970	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	miscRNA
chr16.81282939.+	chr16	81282939	81282940	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10643	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr20.32031781.-	chr20	32031781	32031782	-	0	NA	promoter-TSS (NM_003098)	promoter-TSS (NM_003098)	83	NM_003098	6640	Hs.31121	NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	"syntrophin, alpha 1"	protein-coding
chr7.64198969.-	chr7	64198969	64198970	-	0	NA	Intergenic	SVA_D|Other|Other	55797	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr6.12041598.-	chr6	12041598	12041599	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28874	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr7.158790508.-	chr7	158790508	158790509	-	0	NA	Intergenic	Intergenic	10537	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr7.4357616.+	chr7	4357616	4357617	+	0	NA	Intergenic	AluSq2|SINE|Alu	188299	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr14.105242468.-	chr14	105242468	105242469	-	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	-17470	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr3.120004184.-	chr3	120004184	120004185	-	0	NA	Intergenic	CpG	41042	NM_153002	165829	Hs.333358	NM_001168271	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
chr11.1884715.+	chr11	1884715	1884716	+	0	NA	"intron (NM_002339, intron 1 of 10)"	MIRb|SINE|MIR	-1680	NM_001242932	4046	Hs.56729	NM_001013253	ENSG00000130592	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
chr18.13095620.+	chr18	13095620	13095621	+	0	NA	"exon (NM_032142, exon 35 of 45)"	"exon (NM_032142, exon 35 of 45)"	104259	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr3.132757929.-	chr3	132757929	132757930	-	0	NA	"intron (NM_023943, intron 1 of 5)"	"intron (NM_023943, intron 1 of 5)"	-758	NM_023943	66000	Hs.191616	NM_001136469	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
chrX.9477151.-	chrX	9477151	9477152	-	0	NA	"intron (NM_005647, intron 2 of 17)"	AluY|SINE|Alu	-43950	NM_005647	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chrX.133565055.+	chrX	133565055	133565056	+	0	NA	Intergenic	AluSp|SINE|Alu	-29120	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr1.55681358.-	chr1	55681358	55681359	-	0	NA	promoter-TSS (NM_015306)	promoter-TSS (NM_015306)	-277	NR_038320	100507634	Hs.735428	NR_038320		LOC100507634	-	uncharacterized LOC100507634	miscRNA
chr2.241622500.-	chr2	241622500	241622501	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	183	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr15.93372488.+	chr15	93372488	93372489	+	0	NA	Intergenic	AluSg|SINE|Alu	33774	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr2.86948208.-	chr2	86948208	86948209	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	-37	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr8.120565250.+	chr8	120565250	120565251	+	0	NA	Intergenic	AluSc8|SINE|Alu	39998	NR_045555	5168	Hs.190977	NM_001040092	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
chr2.70199639.+	chr2	70199639	70199640	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10242	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr2.43707919.+	chr2	43707919	43707920	+	0	NA	"intron (NM_022065, intron 26 of 37)"	AluSx3|SINE|Alu	115194	NM_001083953	63892	Hs.369592	NM_001083953	ENSG00000115970	THADA	GITA	thyroid adenoma associated	protein-coding
chr6.122006955.+	chr6	122006955	122006956	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250210	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr20.32873731.+	chr20	32873731	32873732	+	0	NA	"intron (NM_000687, intron 8 of 9)"	AluY|SINE|Alu	17484	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chrX.20694448.+	chrX	20694448	20694449	+	0	NA	Intergenic	AluY|SINE|Alu	-409698	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr11.62436541.-	chr11	62436541	62436542	-	0	NA	"intron (NM_024099, intron 3 of 6)"	AluY|SINE|Alu	2585	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chr3.192348631.+	chr3	192348631	192348632	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96757	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr16.77246841.+	chr16	77246841	77246842	+	0	NA	"3' UTR (NM_001129979, exon 11 of 11)"	"3' UTR (NM_001129979, exon 11 of 11)"	13492	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr9.138087671.+	chr9	138087671	138087672	+	0	NA	Intergenic	Intergenic	14216	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr19.267136.+	chr19	267136	267137	+	0	NA	Intergenic	CpG	24033	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr10.71044952.-	chr10	71044952	71044953	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15196	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr22.18892183.+	chr22	18892183	18892184	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1553	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr1.32679311.-	chr1	32679311	32679312	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4616	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr16.656888.+	chr16	656888	656889	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16715	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr4.38809151.+	chr4	38809151	38809152	+	0	NA	Intergenic	SVA_D|Other|Other	-2739	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr1.244999168.-	chr1	244999168	244999169	-	0	NA	"intron (NM_198076, intron 1 of 3)"	"intron (NM_198076, intron 1 of 3)"	-529	NM_198076	116228	Hs.411490	NM_198076	ENSG00000203667	COX20	FAM36A	COX20 Cox2 chaperone homolog (S. cerevisiae)	protein-coding
chr22.38498768.+	chr22	38498768	38498769	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7908	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr4.1358093.-	chr4	1358093	1358094	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-16989	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr2.102313609.-	chr2	102313609	102313610	-	0	NA	promoter-TSS (NM_145687)	promoter-TSS (NM_145687)	556	NM_004834	9448	Hs.743950	NM_001242559		MAP4K4	FLH21957|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
chr9.137186740.+	chr9	137186740	137186741	+	0	NA	Intergenic	Intergenic	-31576	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr14.35800641.+	chr14	35800641	35800642	+	0	NA	Intergenic	AluSx|SINE|Alu	39067	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr14.102109502.+	chr14	102109502	102109503	+	0	NA	Intergenic	AluY|SINE|Alu	81814	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr6.158438926.+	chr6	158438926	158438927	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	846	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr8.57184598.+	chr8	57184598	57184599	+	0	NA	Intergenic	SVA_D|Other|Other	48643	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr2.27893598.-	chr2	27893598	27893599	-	0	NA	"intron (NM_018158, intron 5 of 13)"	AluY|SINE|Alu	7149	NM_014860	9913	Hs.6232	NM_014860	ENSG00000119760	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	suppressor of Ty 7 (S. cerevisiae)-like	protein-coding
chr16.31932485.-	chr16	31932485	31932486	-	0	NA	Intergenic	AluY|SINE|Alu	-47406	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr1.228072160.+	chr1	228072160	228072161	+	0	NA	Intergenic	Intergenic	57224	NR_049806	100847072		NR_049806		MIR5008	-	microRNA 5008	miscRNA
chr5.159429731.+	chr5	159429731	159429732	+	0	NA	Intergenic	AluSz|SINE|Alu	-6449	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr17.4926566.+	chr17	4926566	4926567	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12161	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr7.1592380.+	chr7	1592380	1592381	+	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	3686	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chrX.119469557.+	chrX	119469557	119469558	+	0	NA	Intergenic	AluY|SINE|Alu	-24166	NM_001104544	55026	Hs.437563	NM_001104544	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
chr4.989160.-	chr4	989160	989161	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1936	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr16.66785754.-	chr16	66785754	66785755	-	0	NA	promoter-TSS (NM_006141)	promoter-TSS (NM_006141)	229	NM_006141	1783	Hs.369068	NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	"dynein, cytoplasmic 1, light intermediate chain 2"	protein-coding
chr11.120093186.-	chr11	120093186	120093187	-	0	NA	"intron (NM_178507, intron 1 of 3)"	AluSx|SINE|Alu	-11439	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr20.31071209.-	chr20	31071209	31071210	-	0	NA	"5' UTR (NM_080616, exon 1 of 8)"	"5' UTR (NM_080616, exon 1 of 8)"	-176	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr2.224254286.-	chr2	224254286	224254287	-	0	NA	Intergenic	MER49|LTR|ERV1	-212931	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
chr17.12456649.-	chr17	12456649	12456650	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3364	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr7.2678204.+	chr7	2678204	2678205	+	0	NA	"intron (NM_025250, intron 1 of 13)"	"intron (NM_025250, intron 1 of 13)"	6601	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety homolog 3 (Drosophila)	protein-coding
chr7.50577830.+	chr7	50577830	50577831	+	0	NA	"intron (NM_001242889, intron 4 of 12)"	AluY|SINE|Alu	-21627	NR_033845	100129427	Hs.680434	NR_033845	ENSG00000226122	LOC100129427	-	uncharacterized LOC100129427	miscRNA
chr8.143678308.+	chr8	143678308	143678309	+	0	NA	Intergenic	Intergenic	17525	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr7.31546643.+	chr7	31546643	31546644	+	0	NA	Intergenic	L1PA3|LINE|L1	-7042	NM_001257967	223075	Hs.224269	NM_001257967	ENSG00000180347	CCDC129	-	coiled-coil domain containing 129	protein-coding
chr7.155250547.-	chr7	155250547	155250548	-	0	NA	promoter-TSS (NM_001427)	promoter-TSS (NM_001427)	277	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr18.55790706.-	chr18	55790706	55790707	-	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	25859	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr18.51750890.-	chr18	51750890	51750891	-	0	NA	"exon (NM_003927, exon 1 of 7)"	"exon (NM_003927, exon 1 of 7)"	-268	NM_003927	8932	Hs.25674	NM_003927	ENSG00000134046	MBD2	DMTase|NY-CO-41	methyl-CpG binding domain protein 2	protein-coding
chr6.166722242.-	chr6	166722242	166722243	-	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	371	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr5.37382796.+	chr5	37382796	37382797	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3384	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr10.37024494.+	chr10	37024494	37024495	+	0	NA	Intergenic	AluY|SINE|Alu	-390291	NM_052997	91074	Hs.373787	NM_052997	ENSG00000148513	ANKRD30A	NY-BR-1	ankyrin repeat domain 30A	protein-coding
chr19.51228880.-	chr19	51228880	51228881	-	0	NA	"3' UTR (NM_002975, exon 4 of 4)"	"3' UTR (NM_002975, exon 4 of 4)"	-2275	NM_002975	6320	Hs.512680	NM_002975	ENSG00000105472	CLEC11A	CLECSF3|LSLCL|P47|SCGF	"C-type lectin domain family 11, member A"	protein-coding
chr19.7911099.-	chr19	7911099	7911100	-	0	NA	promoter-TSS (NM_001159944)	promoter-TSS (NM_001159944)	287	NM_001159944	115704	Hs.26870	NM_001159944	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5-like	protein-coding
chr8.144512847.-	chr8	144512847	144512848	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	245	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chrX.39873695.-	chrX	39873695	39873696	-	0	NA	Intergenic	CpG	-83024	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr9.129229365.+	chr9	129229365	129229366	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56582	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr18.55790701.+	chr18	55790701	55790702	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25864	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr20.33005267.-	chr20	33005267	33005268	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	48863	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr14.102954933.+	chr14	102954933	102954934	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21195	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr20.39978524.+	chr20	39978524	39978525	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8964	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chrX.152916301.-	chrX	152916301	152916302	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8404	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr19.1115955.+	chr19	1115955	1115956	+	0	NA	"intron (NM_014963, intron 17 of 31)"	"intron (NM_014963, intron 17 of 31)"	11306	NM_001039848	2879	Hs.433951	NM_001039847	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
chr6.150275488.+	chr6	150275488	150275489	+	0	NA	Intergenic	CpG	-9655	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr14.77743564.+	chr14	77743564	77743565	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5909	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr3.8721294.-	chr3	8721294	8721295	-	0	NA	Intergenic	Intergenic	27530	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr18.77244838.+	chr18	77244838	77244839	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84512	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chrX.67548026.-	chrX	67548026	67548027	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105273	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr1.40052622.+	chr1	40052622	40052623	+	0	NA	Intergenic	AluSq|SINE|Alu	-10101	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr2.121244093.-	chr2	121244093	121244094	-	0	NA	Intergenic	Intergenic	20168	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr2.239047567.-	chr2	239047567	239047568	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-204	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr17.79898093.-	chr17	79898093	79898094	-	0	NA	"3' UTR (NM_001145113, exon 3 of 3)"	"3' UTR (NM_001145113, exon 3 of 3)"	3125	NM_153824	5831	Hs.163451	NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
chr7.5553291.-	chr7	5553291	5553292	-	0	NA	"exon (NM_024963, exon 1 of 5)"	"exon (NM_024963, exon 1 of 5)"	-108	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr20.44044788.+	chr20	44044788	44044789	+	0	NA	promoter-TSS (NM_015937)	promoter-TSS (NM_015937)	81	NR_047695	51604	Hs.437388	NM_001184728	ENSG00000124155	PIGT	NDAP	"phosphatidylinositol glycan anchor biosynthesis, class T"	protein-coding
chr18.12734564.-	chr18	12734564	12734565	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31577	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr8.54998364.-	chr8	54998364	54998365	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16213	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr15.91370797.+	chr15	91370797	91370798	+	0	NA	Intergenic	Intergenic	-41088	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr17.79427802.+	chr17	79427802	79427803	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9588	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr9.11197008.-	chr9	11197008	11197009	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584285	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.37699315.+	chr8	37699315	37699316	+	0	NA	"exon (NM_032777, exon 19 of 19)"	"exon (NM_032777, exon 19 of 19)"	8116	NM_018310	55290	Hs.709301	NM_018310		BRF2	BRFU|TFIIIB50	"BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like"	protein-coding
chr11.63993758.-	chr11	63993758	63993759	-	0	NA	promoter-TSS (NM_001128612)	promoter-TSS (NM_001128612)	-12	NM_032344	84304	Hs.744098	NM_001128612	ENSG00000149761	NUDT22	-	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding
chr6.108315261.+	chr6	108315261	108315262	+	0	NA	Intergenic	AluSz|SINE|Alu	-35779	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr8.123899514.-	chr8	123899514	123899515	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105613	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr19.5948201.+	chr19	5948201	5948202	+	0	NA	"intron (NM_007320, intron 2 of 15)"	AluY|SINE|Alu	30119	NM_003624	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
chr7.1570468.-	chr7	1570468	1570469	-	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-100	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr3.9398172.-	chr3	9398172	9398173	-	0	NA	Intergenic	AluY|SINE|Alu	6545	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr9.139028953.-	chr9	139028953	139028954	-	0	NA	Intergenic	MIRb|SINE|MIR	18222	NM_152833	90120	Hs.287411	NM_001256526	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
chr8.43403640.-	chr8	43403640	43403641	-	0	NA	Intergenic	GSATX|Satellite|centr	-256055	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr2.163018782.+	chr2	163018782	163018783	+	0	NA	Intergenic	AluSz|SINE|Alu	-9868	NM_002054	2641	Hs.741174	NM_002054	ENSG00000115263	GCG	GLP1|GLP2|GRPP	glucagon	protein-coding
chr4.1721001.-	chr4	1721001	1721002	-	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	-2083	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr2.237068276.+	chr2	237068276	237068277	+	0	NA	Intergenic	CpG	8376	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr6.46742361.-	chr6	46742361	46742362	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18733	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr3.124468926.+	chr3	124468926	124468927	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19713	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr6.89326893.+	chr6	89326893	89326894	+	0	NA	"intron (NM_003800, intron 14 of 15)"	AluY|SINE|Alu	346455	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr8.86544470.-	chr8	86544470	86544471	-	0	NA	Intergenic	AluSp|SINE|Alu	-23435	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr1.36590760.-	chr1	36590760	36590761	-	0	NA	Intergenic	Intergenic	-24355	NR_073098	27095	Hs.523131	NM_001270894	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
chr4.39561464.-	chr4	39561464	39561465	-	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	-32005	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr18.11086403.+	chr18	11086403	11086404	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62358	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr19.2424528.-	chr19	2424528	2424529	-	0	NA	"intron (NM_182973, intron 14 of 16)"	CpG-12401	-3347	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr17.80431715.-	chr17	80431715	80431716	-	0	NA	"intron (NM_012336, intron 5 of 10)"	AluSz|SINE|Alu	-15175	NM_001083608	26502	Hs.600304	NM_001038618	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
chr11.63682042.+	chr11	63682042	63682043	+	0	NA	"intron (NM_173587, intron 5 of 11)"	"intron (NM_173587, intron 5 of 11)"	2274	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
chr3.46792405.+	chr3	46792405	46792406	+	0	NA	Intergenic	CpG	-6160	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr16.79634164.-	chr16	79634164	79634165	-	0	NA	"5' UTR (NM_005360, exon 1 of 2)"	"5' UTR (NM_005360, exon 1 of 2)"	-458	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	protein-coding
chr17.1927751.+	chr17	1927751	1927752	+	0	NA	"intron (NM_178568, intron 1 of 1)"	CpG	427	NM_178568	146760	Hs.22917	NM_178568		RTN4RL1	NGRH2|NgR3	reticulon 4 receptor-like 1	protein-coding
chr19.10041253.+	chr19	10041253	10041254	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5817	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr21.47838753.-	chr21	47838753	47838754	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40109	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr1.203274714.+	chr1	203274714	203274715	+	0	NA	promoter-TSS (NM_006763)	promoter-TSS (NM_006763)	50	NM_006763	7832	Hs.519162	NM_006763	ENSG00000159388	BTG2	PC3|TIS21	"BTG family, member 2"	protein-coding
chr16.31448994.-	chr16	31448994	31448995	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5354	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr16.12210428.-	chr16	12210428	12210429	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139826	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr20.61002866.+	chr20	61002866	61002867	+	0	NA	promoter-TSS (NM_080833)	promoter-TSS (NM_080833)	-237	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr7.25058033.-	chr7	25058033	25058034	-	0	NA	Intergenic	SVA_F|Other|Other	38273	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr12.133328237.+	chr12	133328237	133328238	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10214	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr19.44489478.-	chr19	44489478	44489479	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1156	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr17.18575686.-	chr17	18575686	18575687	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-808	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr2.170590587.-	chr2	170590587	170590588	-	0	NA	"5' UTR (NM_144711, exon 1 of 4)"	"5' UTR (NM_144711, exon 1 of 4)"	-231	NM_144711	151230	Hs.733554	NM_144711	ENSG00000213160	KLHL23	DITHP	kelch-like family member 23	protein-coding
chr6.55774911.-	chr6	55774911	55774912	-	0	NA	Intergenic	SVA_D|Other|Other	34536	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr4.177147009.-	chr4	177147009	177147010	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30187	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr3.44283577.+	chr3	44283577	44283578	+	0	NA	"exon (NM_001145030, exon 1 of 20)"	"exon (NM_001145030, exon 1 of 20)"	199	NM_001145030	375337	Hs.132125	NM_001145030	ENSG00000173769	TOPAZ1	C3orf77	testis and ovary specific PAZ domain containing 1	protein-coding
chrX.23541334.+	chrX	23541334	23541335	+	0	NA	Intergenic	SVA_A|Other|Other	-144311	NM_006406	10549	Hs.83383	NM_006406	ENSG00000123131	PRDX4	AOE37-2|PRX-4	peroxiredoxin 4	protein-coding
chr11.43543231.+	chr11	43543231	43543232	+	0	NA	Intergenic	Intergenic	-37975	NR_031577	100313777		NR_031577	ENSG00000211568	MIR670	hsa-mir-670	microRNA 670	miscRNA
chr14.101693616.+	chr14	101693616	101693617	+	0	NA	Intergenic	Intergenic	157368	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr5.178157732.-	chr5	178157732	178157733	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	29	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chrX.47441861.-	chrX	47441861	47441862	-	0	NA	"5' UTR (NM_003254, exon 1 of 6)"	"5' UTR (NM_003254, exon 1 of 6)"	-171	NM_003254	7076	Hs.522632	NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP	TIMP metallopeptidase inhibitor 1	protein-coding
chr9.135013594.+	chr9	135013594	135013595	+	0	NA	Intergenic	AluSz|SINE|Alu	-23740	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr10.133058459.-	chr10	133058459	133058460	-	0	NA	"intron (NM_174937, intron 4 of 11)"	CpG	-51525	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr7.61969301.-	chr7	61969301	61969302	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-795133	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr5.37382634.+	chr5	37382634	37382635	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3222	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr9.138663312.-	chr9	138663312	138663313	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69281	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr19.15344301.+	chr19	15344301	15344302	+	0	NA	promoter-TSS (NM_001142886)	promoter-TSS (NM_001142886)	-443	NM_001142886	79852	Hs.156457	NM_001142886	ENSG00000105131	EPHX3	ABHD9	epoxide hydrolase 3	protein-coding
chr1.32679293.-	chr1	32679293	32679294	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4598	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr21.47403476.+	chr21	47403476	47403477	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1813	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr19.47628038.+	chr19	47628038	47628039	+	0	NA	Intergenic	AluY|SINE|Alu	-6042	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr8.137021849.-	chr8	137021849	137021850	-	0	NA	Intergenic	Intergenic	-552133	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	"KH domain containing, RNA binding, signal transduction associated 3"	protein-coding
chr16.30760104.+	chr16	30760104	30760105	+	0	NA	"intron (NM_000294, intron 1 of 9)"	CpG	484	NM_000294	5261	Hs.65735	NM_000294	ENSG00000156873	PHKG2	GSD9C	"phosphorylase kinase, gamma 2 (testis)"	protein-coding
chr8.102133503.-	chr8	102133503	102133504	-	0	NA	Intergenic	Intergenic	-69221	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	miscRNA
chr10.88136977.+	chr10	88136977	88136978	+	0	NA	Intergenic	CpG	-10727	NM_017551	2894	Hs.530653	NM_017551	ENSG00000182771	GRID1	GluD1	"glutamate receptor, ionotropic, delta 1"	protein-coding
chr19.30963824.-	chr19	30963824	30963825	-	0	NA	"intron (NM_014717, intron 2 of 4)"	AluSx|SINE|Alu	-100496	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
chr17.2311344.-	chr17	2311344	2311345	-	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	7086	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr2.207270705.-	chr2	207270705	207270706	-	0	NA	Intergenic	AluY|SINE|Alu	37663	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr9.138397745.-	chr9	138397745	138397746	-	0	NA	Intergenic	Intergenic	-5268	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr14.50838486.-	chr14	50838486	50838487	-	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	-24131	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr19.53096861.-	chr19	53096861	53096862	-	0	NA	Intergenic	SVA_D|Other|Other	3076	NR_023311	7696	Hs.373648	NM_003438		ZNF137P	ZNF137|pHZ-30	"zinc finger protein 137, pseudogene"	pseudo
chr4.26585635.+	chr4	26585635	26585636	+	0	NA	promoter-TSS (NM_018317)	promoter-TSS (NM_018317)	89	NM_018317	55296	Hs.479403	NM_018317	ENSG00000109680	TBC1D19	-	"TBC1 domain family, member 19"	protein-coding
chr16.926022.-	chr16	926022	926023	-	0	NA	"intron (NR_033646, intron 8 of 12)"	"intron (NR_033646, intron 8 of 12)"	-70579	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr1.219500313.-	chr1	219500313	219500314	-	0	NA	Intergenic	AluSc|SINE|Alu	-153121	NM_138794	127018	Hs.657617	NM_138794	ENSG00000143353	LYPLAL1	-	lysophospholipase-like 1	protein-coding
chrX.122993619.-	chrX	122993619	122993620	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	43	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr22.45845274.-	chr22	45845274	45845275	-	0	NA	Intergenic	AluSz6|SINE|Alu	-35702	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11	RIB43A domain with coiled-coils 2	protein-coding
chr19.13741944.-	chr19	13741944	13741945	-	0	NA	Intergenic	AluSc8|SINE|Alu	116809	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr4.3440414.-	chr4	3440414	3440415	-	0	NA	"intron (NM_198227, intron 15 of 15)"	"intron (NM_198227, intron 15 of 15)"	3312	NM_001528	3083	Hs.104	NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
chrX.53808355.-	chrX	53808355	53808356	-	0	NA	Intergenic	AluYb8|SINE|Alu	94658	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr15.63229211.+	chr15	63229211	63229212	+	0	NA	Intergenic	AluSp|SINE|Alu	-105627	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr22.50853130.+	chr22	50853130	50853131	+	0	NA	"intron (NM_001242898, intron 5 of 23)"	"intron (NM_001242898, intron 5 of 23)"	60334	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr17.35109495.+	chr17	35109495	35109496	+	0	NA	Intergenic	Intergenic	151470	NM_024864	79922	Hs.194864	NM_024864	ENSG00000129282	MRM1	-	mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	protein-coding
chr22.24621456.+	chr22	24621456	24621457	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19654	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr10.133016262.-	chr10	133016262	133016263	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93722	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr20.44600728.+	chr20	44600728	44600729	+	0	NA	"intron (NM_022095, intron 1 of 27)"	CpG-16708	105	NM_022095	63925	Hs.174193	NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
chr1.227982858.+	chr1	227982858	227982859	+	0	NA	Intergenic	Intergenic	-20560	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr8.98786433.-	chr8	98786433	98786434	-	0	NA	Intergenic	LTR17|LTR|ERV1	1376	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr2.130902785.-	chr2	130902785	130902786	-	0	NA	promoter-TSS (NM_001258307)	promoter-TSS (NM_001258307)	78	NM_207310	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chr16.3156801.+	chr16	3156801	3156802	+	0	NA	Intergenic	CpG	-5762	NM_001042428	7755	Hs.592088	NM_001042428	ENSG00000122386	ZNF205	RhitH|ZNF210|Zfp13	zinc finger protein 205	protein-coding
chr22.32281874.-	chr22	32281874	32281875	-	0	NA	"intron (NM_001242896, intron 38 of 42)"	AluSg|SINE|Alu	58605	NM_003405	7533	Hs.226755	NM_003405	ENSG00000128245	YWHAH	YWHA1	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide"	protein-coding
chr12.46411958.-	chr12	46411958	46411959	-	0	NA	Intergenic	LTR12C|LTR|ERV1	27557	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr1.3668275.+	chr1	3668275	3668276	+	0	NA	promoter-TSS (NM_152492)	promoter-TSS (NM_152492)	-690	NM_152492	148870	Hs.348700	NM_152492	ENSG00000162592	CCDC27	-	coiled-coil domain containing 27	protein-coding
chr7.148804637.+	chr7	148804637	148804638	+	0	NA	"intron (NM_001001661, intron 3 of 3)"	AluY|SINE|Alu	-16768	NM_152411	136051	Hs.729572	NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
chr6.33719630.+	chr6	33719630	33719631	+	0	NA	Intergenic	Intergenic	-4868	NM_001142883	117283	Hs.17253	NM_001142883	ENSG00000161896	IP6K3	IHPK3|INSP6K3	inositol hexakisphosphate kinase 3	protein-coding
chr3.32863306.+	chr3	32863306	32863307	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3796	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr7.4304974.+	chr7	4304974	4304975	+	0	NA	"exon (NM_152744, exon 45 of 45)"	"exon (NM_152744, exon 45 of 45)"	135657	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr17.76212093.-	chr17	76212093	76212094	-	0	NA	"exon (NM_001012271, exon 3 of 5)"	"exon (NM_001012271, exon 3 of 5)"	-1816	NM_001012270	332	Hs.514527	NM_001012270	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
chr13.88877258.+	chr13	88877258	88877259	+	0	NA	Intergenic	AluY|SINE|Alu	-315826	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr1.113385406.-	chr1	113385406	113385407	-	0	NA	Intergenic	AluSx|SINE|Alu	80566	NR_002796	246182	Hs.647691	NR_002796		AKR7A2P1	AFARP1	"aldo-keto reductase family 7, member A2 pseudogene 1"	pseudo
chr12.9892340.-	chr12	9892340	9892341	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6445	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr17.11197400.+	chr17	11197400	11197401	+	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc|SINE|Alu	52660	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr11.133788134.+	chr11	133788134	133788135	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16499	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr21.47838702.+	chr21	47838702	47838703	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40160	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chrX.23801551.+	chrX	23801551	23801552	+	0	NA	"intron (NR_027783, intron 1 of 6)"	CpG	276	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr6.1035127.+	chr6	1035127	1035128	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66440	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chr3.48533718.-	chr3	48533718	48533719	-	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	-7765	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr20.62282069.+	chr20	62282069	62282070	+	0	NA	"intron (NM_015894, intron 1 of 4)"	"intron (NM_015894, intron 1 of 4)"	2050	NM_001276310	50861	Hs.639609	NM_001276310	ENSG00000197457	STMN3	SCLIP	stathmin-like 3	protein-coding
chrX.46794161.+	chrX	46794161	46794162	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22293	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr17.74732640.+	chr17	74732640	74732641	+	0	NA	promoter-TSS (NM_001242532)	promoter-TSS (NM_001242532)	-7	NM_001242534	79157	Hs.732019	NM_001242532	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
chr7.158671006.+	chr7	158671006	158671007	+	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	21737	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr17.27894527.+	chr17	27894527	27894528	+	0	NA	promoter-TSS (NM_198147)	promoter-TSS (NM_198147)	-485	NM_198147	116236	Hs.106510	NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
chr8.55038036.+	chr8	55038036	55038037	+	0	NA	Intergenic	SVA_F|Other|Other	-9745	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
chr11.9243426.+	chr11	9243426	9243427	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43447	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr7.36403838.+	chr7	36403838	36403839	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	2944	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr6.108315266.+	chr6	108315266	108315267	+	0	NA	Intergenic	AluSz|SINE|Alu	-35784	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr13.21644875.-	chr13	21644875	21644876	-	0	NA	Intergenic	AluSx|SINE|Alu	9153	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr16.9185068.+	chr16	9185068	9185069	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-469	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chrX.689404.-	chrX	689404	689405	-	0	NA	Intergenic	Intergenic	-104325	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr7.1286166.-	chr7	1286166	1286167	-	0	NA	Intergenic	CpG	-13512	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr1.33383001.+	chr1	33383001	33383002	+	0	NA	Intergenic	AluSq2|SINE|Alu	-16048	NM_033504	113452	Hs.534521	NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
chr15.26543473.+	chr15	26543473	26543474	+	0	NA	Intergenic	LTR12C|LTR|ERV1	182513	NR_038852	503519	Hs.371380	NR_038851	ENSG00000259150	LOC503519	-	uncharacterized LOC503519	miscRNA
chr2.136633745.+	chr2	136633745	136633746	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	302	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr17.40397228.-	chr17	40397228	40397229	-	0	NA	"intron (NM_012448, intron 1 of 18)"	AluSc|SINE|Alu	-31196	NM_012448	6777	Hs.743995	NM_012448	ENSG00000173757	STAT5B	STAT5	signal transducer and activator of transcription 5B	protein-coding
chr16.23724527.+	chr16	23724527	23724528	+	0	NA	"exon (NM_033266, exon 1 of 22)"	"exon (NM_033266, exon 1 of 22)"	294	NM_033266	10595	Hs.592041	NM_033266	ENSG00000134398	ERN2	IRE1-BETA|IRE1b	endoplasmic reticulum to nucleus signaling 2	protein-coding
chr3.102974051.+	chr3	102974051	102974052	+	0	NA	Intergenic	SVA_D|Other|Other	820192	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr16.22675497.-	chr16	22675497	22675498	-	0	NA	Intergenic	AluJr|SINE|Alu	54106	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr19.50670022.+	chr19	50670022	50670023	+	0	NA	Intergenic	AluSx|SINE|Alu	-3484	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr21.45243649.+	chr21	45243649	45243650	+	0	NA	Intergenic	Intergenic	-11201	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr8.130306082.+	chr8	130306082	130306083	+	0	NA	Intergenic	AluY|SINE|Alu	-52596	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LOC728724	-	hCG1814486	miscRNA
chr5.179385171.-	chr5	179385171	179385172	-	0	NA	"intron (NM_018434, intron 8 of 8)"	AluYa5|SINE|Alu	50315	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr10.17622237.-	chr10	17622237	17622238	-	0	NA	Intergenic	AluY|SINE|Alu	-37136	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr3.183052356.-	chr3	183052356	183052357	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81324	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr12.38493587.-	chr12	38493587	38493588	-	0	NA	Intergenic	Intergenic	216970	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr12.123465429.-	chr12	123465429	123465430	-	0	NA	TTS (NM_024623)	TTS (NM_024623)	-549	NM_001002252	51329	Hs.103561	NM_001002251	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP-ribosylation-like factor 6 interacting protein 4	protein-coding
chr19.525279.-	chr19	525279	525280	-	0	NA	Intergenic	Intergenic	6454	NM_004359	997	Hs.514997	NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34	protein-coding
chr8.110703911.-	chr8	110703911	110703912	-	0	NA	"5' UTR (NM_001099743, exon 1 of 8)"	"5' UTR (NM_001099743, exon 1 of 8)"	-109	NM_001099744	55638	Hs.390738	NM_001099743	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
chrX.152908276.-	chrX	152908276	152908277	-	0	NA	"intron (NM_001395, intron 1 of 3)"	CpG	-379	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr2.163473820.+	chr2	163473820	163473821	+	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	221437	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chr7.55379437.+	chr7	55379437	55379438	+	0	NA	Intergenic	SVA_D|Other|Other	-53704	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr12.132116830.+	chr12	132116830	132116831	+	0	NA	Intergenic	L1ME1|LINE|L1	-78802	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr7.936454.-	chr7	936454	936455	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20263	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr15.73344872.-	chr15	73344872	73344873	-	0	NA	promoter-TSS (NM_001172624)	promoter-TSS (NM_001172624)	-47	NM_001172623	4756	Hs.388613	NM_001172623	ENSG00000067141	NEO1	IGDCC2|NGN	neogenin 1	protein-coding
chr9.3526345.+	chr9	3526345	3526346	+	0	NA	promoter-TSS (NM_002919)	promoter-TSS (NM_002919)	-362	NM_002919	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	bA32F11.1	"regulatory factor X, 3 (influences HLA class II expression)"	protein-coding
chr19.4042735.+	chr19	4042735	4042736	+	0	NA	Intergenic	Intergenic	24081	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr19.14156296.-	chr19	14156296	14156297	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13675	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr17.40397230.-	chr17	40397230	40397231	-	0	NA	"intron (NM_012448, intron 1 of 18)"	AluSc|SINE|Alu	-31194	NM_012448	6777	Hs.743995	NM_012448	ENSG00000173757	STAT5B	STAT5	signal transducer and activator of transcription 5B	protein-coding
chr16.2009563.-	chr16	2009563	2009564	-	0	NA	promoter-TSS (NM_004548)	promoter-TSS (NM_004548)	-46	NM_004548	4716	Hs.513266	NM_004548	ENSG00000140990	NDUFB10	PDSW	"NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa"	protein-coding
chrX.141491523.+	chrX	141491523	141491524	+	0	NA	Intergenic	AluY|SINE|Alu	-198447	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr6.166722178.-	chr6	166722178	166722179	-	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	307	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr19.16136965.+	chr19	16136965	16136966	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7558	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr17.27070015.+	chr17	27070015	27070016	+	0	NA	TTS (NM_178170)	TTS (NM_178170)	-1008	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr19.50614555.-	chr19	50614555	50614556	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1190	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr9.38705483.-	chr9	38705483	38705484	-	0	NA	Intergenic	AluY|SINE|Alu	-84398	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr2.127899173.-	chr2	127899173	127899174	-	0	NA	Intergenic	Intergenic	34270	NM_139344	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
chr2.213546623.+	chr2	213546623	213546624	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143271	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr4.96097983.+	chr4	96097983	96097984	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85341	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr5.497424.-	chr5	497424	497425	-	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	24344	NR_024158	25845	Hs.719132	NR_024158	ENSG00000188242	PP7080	-	uncharacterized LOC25845	miscRNA
chr10.8640545.-	chr10	8640545	8640546	-	0	NA	Intergenic	AluSq2|SINE|Alu	-543878	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr5.79783935.-	chr5	79783935	79783936	-	0	NA	"5' UTR (NM_205548, exon 1 of 6)"	"5' UTR (NM_205548, exon 1 of 6)"	-135	NM_205548	167555	Hs.592674	NM_205548	ENSG00000152380	FAM151B	UNQ9217	"family with sequence similarity 151, member B"	protein-coding
chr2.43253946.-	chr2	43253946	43253947	-	0	NA	Intergenic	Intergenic	-199799	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr5.165696021.-	chr5	165696021	165696022	-	0	NA	Intergenic	AluY|SINE|Alu	1015822	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr2.129491386.+	chr2	129491386	129491387	+	0	NA	Intergenic	Intergenic	-415215	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr12.32200093.+	chr12	32200093	32200094	+	0	NA	Intergenic	AluSz|SINE|Alu	-53291	NR_046944	100873778		NR_046944		RNU6-78	-	"RNA, U6 small nuclear 78"	snRNA
chr4.39561563.+	chr4	39561563	39561564	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32104	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr13.52378248.+	chr13	52378248	52378249	+	0	NA	promoter-TSS (NM_024705)	promoter-TSS (NM_024705)	50	NM_001031719	79758	Hs.266728	NM_001031719	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase (SDR family) member 12	protein-coding
chr19.1698775.+	chr19	1698775	1698776	+	0	NA	Intergenic	CpG	-46447	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr4.93787960.+	chr4	93787960	93787961	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562410	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr12.112426257.-	chr12	112426257	112426258	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24766	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr19.30963856.-	chr19	30963856	30963857	-	0	NA	"intron (NM_014717, intron 2 of 4)"	AluSx|SINE|Alu	-100528	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
chrX.39680345.+	chrX	39680345	39680346	+	0	NA	Intergenic	CpG	276374	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr4.5892130.-	chr4	5892130	5892131	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1815	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr17.77657009.+	chr17	77657009	77657010	+	0	NA	Intergenic	AluY|SINE|Alu	24049	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	-	microRNA 4739	miscRNA
chr14.105134395.+	chr14	105134395	105134396	+	0	NA	Intergenic	AluSz|SINE|Alu	9691	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr5.179383841.+	chr5	179383841	179383842	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-48985	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr11.117881966.+	chr11	117881966	117881967	+	0	NA	Intergenic	Intergenic	24860	NM_001558	3587	Hs.504035	NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	"interleukin 10 receptor, alpha"	protein-coding
chr8.128328734.+	chr8	128328734	128328735	+	0	NA	Intergenic	Intergenic	-99123	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr7.532225.+	chr7	532225	532226	+	0	NA	Intergenic	Intergenic	27256	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr12.123965667.-	chr12	123965667	123965668	-	0	NA	"intron (NM_178314, intron 6 of 6)"	AluSx1|SINE|Alu	-21281	NM_180699	11066	Hs.632738	NM_022717		SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein 35kDa (U11/U12)	protein-coding
chr1.45963434.+	chr1	45963434	45963435	+	0	NA	"intron (NR_033298, intron 2 of 5)"	SVA_D|Other|Other	2317	NR_033298	126661	Hs.461300	NM_001102601	ENSG00000236624	CCDC163P	C1orf231	"coiled-coil domain containing 163, pseudogene"	pseudo
chr15.75701803.+	chr15	75701803	75701804	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	"intron (NM_001145357, intron 8 of 20)"	-40835	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr10.118500984.+	chr10	118500984	118500985	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1101	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr9.140149786.-	chr9	140149786	140149787	-	0	NA	promoter-TSS (NM_015456)	promoter-TSS (NM_015456)	-27	NM_015456	25920	Hs.521809	NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
chr3.31574360.-	chr3	31574360	31574361	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	131	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr7.100044642.-	chr7	100044642	100044643	-	0	NA	Intergenic	AluY|SINE|Alu	10548	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr4.127284952.-	chr4	127284952	127284953	-	0	NA	Intergenic	LTR17|LTR|ERV1	-856538	NR_031746	100302267		NR_031746		MIR2054	hsa-mir-2054	microRNA 2054	miscRNA
chr12.131551503.-	chr12	131551503	131551504	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98053	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr10.102891269.-	chr10	102891269	102891270	-	0	NA	promoter-TSS (NM_001085398)	promoter-TSS (NM_001085398)	-208	NM_005521	3195	Hs.89583	NM_001195517	ENSG00000107807	TLX1	HOX11|TCL3	T-cell leukemia homeobox 1	protein-coding
chr5.91967020.+	chr5	91967020	91967021	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939479	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr14.102983841.-	chr14	102983841	102983842	-	0	NA	Intergenic	CpG	7713	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr17.810103.+	chr17	810103	810104	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42752	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr20.31070766.-	chr20	31070766	31070767	-	0	NA	"intron (NM_001256798, intron 4 of 10)"	CpG	-619	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr2.234762628.+	chr2	234762628	234762629	+	0	NA	"intron (NM_018410, intron 1 of 8)"	CpG	584	NM_018410	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
chr20.46019535.+	chr20	46019535	46019536	+	0	NA	Intergenic	AluY|SINE|Alu	-34061	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr3.188566635.+	chr3	188566635	188566636	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323128	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr19.46786015.+	chr19	46786015	46786016	+	0	NA	"intron (NR_046936, intron 3 of 3)"	AluSx1|SINE|Alu	-14288	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	"hypoxia inducible factor 3, alpha subunit"	protein-coding
chr2.152760048.-	chr2	152760048	152760049	-	0	NA	"intron (NM_001005746, intron 2 of 13)"	"intron (NM_001005746, intron 2 of 13)"	-70437	NM_001005747	785	Hs.120725	NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	"calcium channel, voltage-dependent, beta 4 subunit"	protein-coding
chr21.31598721.-	chr21	31598721	31598722	-	0	NA	Intergenic	AluSx4|SINE|Alu	10252	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr12.127944423.-	chr12	127944423	127944424	-	0	NA	Intergenic	Intergenic	421739	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chrX.68956144.+	chrX	68956144	68956145	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSp|SINE|Alu	120233	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr12.133141203.-	chr12	133141203	133141204	-	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	-45834	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr13.37571375.+	chr13	37571375	37571376	+	0	NA	"intron (NM_013338, intron 1 of 9)"	AluSx1|SINE|Alu	2129	NM_001142364	29880	Hs.507769	NM_001142364	ENSG00000120697	ALG5	RP11-421P11.2|bA421P11.2	"ALG5, dolichyl-phosphate beta-glucosyltransferase"	protein-coding
chr10.120841963.+	chr10	120841963	120841964	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1629	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	"eukaryotic translation initiation factor 3, subunit A"	protein-coding
chr10.123791052.+	chr10	123791052	123791053	+	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	42363	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr15.63229238.+	chr15	63229238	63229239	+	0	NA	Intergenic	AluSp|SINE|Alu	-105600	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr19.35368135.-	chr19	35368135	35368136	-	0	NA	Intergenic	AluY|SINE|Alu	-21712	NR_046222	100652909	Hs.374015	NR_046222		LOC100652909	-	uncharacterized LOC100652909	miscRNA
chrX.53125834.+	chrX	53125834	53125835	+	0	NA	Intergenic	AluJb|SINE|Alu	14292	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.40082369.+	chr1	40082369	40082370	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	22979	NM_014571	26508	Hs.472566	NM_014571		HEYL	HESR3|HEY3|HRT3|bHLHb33	hairy/enhancer-of-split related with YRPW motif-like	protein-coding
chr9.105850360.-	chr9	105850360	105850361	-	0	NA	Intergenic	AluYc|SINE|Alu	-92767	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr11.73020396.+	chr11	73020396	73020397	+	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	733	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr12.132389079.+	chr12	132389079	132389080	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9800	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr9.6807787.-	chr9	6807787	6807788	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50146	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr19.7123257.+	chr19	7123257	7123258	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53786	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr2.25758449.-	chr2	25758449	25758450	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114642	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr3.195928315.+	chr3	195928315	195928316	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSz6|SINE|Alu	9985	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr1.217394784.-	chr1	217394784	217394785	-	0	NA	Intergenic	AluSq2|SINE|Alu	83687	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr1.183670887.-	chr1	183670887	183670888	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48439	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr21.35774152.-	chr21	35774152	35774153	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26403	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr19.59025456.-	chr19	59025456	59025457	-	0	NA	"exon (NM_032792, exon 3 of 3)"	"exon (NM_032792, exon 3 of 3)"	2024	NM_012254	10998	Hs.292177	NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	"solute carrier family 27 (fatty acid transporter), member 5"	protein-coding
chr1.10727886.+	chr1	10727886	10727887	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128847	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr2.80427859.+	chr2	80427859	80427860	+	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluSx1|SINE|Alu	103628	NM_178839	347730	Hs.591580	NM_178839	ENSG00000162951	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
chr3.31533156.+	chr3	31533156	31533157	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41335	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr6.33500246.-	chr6	33500246	33500247	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47824	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr3.8721185.-	chr3	8721185	8721186	-	0	NA	Intergenic	Intergenic	27421	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr3.133504045.+	chr3	133504045	133504046	+	0	NA	"intron (NM_021203, intron 1 of 7)"	SVA_F|Other|Other	1168	NM_021203	58477	Hs.12152	NM_021203		SRPRB	APMCF1	"signal recognition particle receptor, B subunit"	protein-coding
chr9.83506.-	chr9	83506	83507	-	0	NA	Intergenic	SVA_E|Other|Other	-34911	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr3.1144542.+	chr3	1144542	1144543	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9913	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr10.108027470.-	chr10	108027470	108027471	-	0	NA	Intergenic	LTR1D|LTR|ERV1	-896996	NM_001206570	114815	Hs.591915	NM_001013031	ENSG00000108018	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chr3.49223413.+	chr3	49223413	49223414	+	0	NA	"intron (NM_001080528, intron 2 of 3)"	AluSx3|SINE|Alu	5878	NM_001080528	646498	Hs.143880	NM_001080528	ENSG00000236980	LOC646498	-	uncharacterized LOC646498	protein-coding
chr19.22990331.+	chr19	22990331	22990332	+	0	NA	Intergenic	CpG	-23358	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr7.4917661.+	chr7	4917661	4917662	+	0	NA	"exon (NM_018059, exon 2 of 15)"	"exon (NM_018059, exon 2 of 15)"	5674	NM_018059	55698	Hs.667336	NM_018059	ENSG00000157927	RADIL	RASIP2	Ras association and DIL domains	protein-coding
chr7.6194287.+	chr7	6194287	6194288	+	0	NA	"exon (NM_032172, exon 15 of 18)"	"exon (NM_032172, exon 15 of 18)"	49737	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
chr12.118079851.+	chr12	118079851	118079852	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280244	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr6.99279468.+	chr6	99279468	99279469	+	0	NA	Intergenic	CpG	-3112	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
chr19.58310343.-	chr19	58310343	58310344	-	0	NA	Intergenic	AluY|SINE|Alu	-15938	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr7.12595797.-	chr7	12595797	12595798	-	0	NA	Intergenic	LTR12C|LTR|ERV1	14406	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr6.34857476.-	chr6	34857476	34857477	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-438	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr15.56465899.-	chr15	56465899	56465900	-	0	NA	"intron (NM_022841, intron 2 of 8)"	AluSq|SINE|Alu	-69584	NM_022841	64864	Hs.282855	NM_022841	ENSG00000181827	RFX7	RFXDC2	"regulatory factor X, 7"	protein-coding
chr19.45530316.+	chr19	45530316	45530317	+	0	NA	"intron (NM_006509, intron 6 of 10)"	AluY|SINE|Alu	-11982	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr10.64884903.-	chr10	64884903	64884904	-	0	NA	Intergenic	AluY|SINE|Alu	8104	NM_030759	29982	Hs.449628	NM_030759	ENSG00000148572	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
chr11.132953316.+	chr11	132953316	132953317	+	0	NA	"intron (NM_001012393, intron 1 of 7)"	"intron (NM_001012393, intron 1 of 7)"	-140279	NM_002545	4978	Hs.4817	NM_001012393	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule-like	protein-coding
chr3.61188811.+	chr3	61188811	61188812	+	0	NA	"intron (NM_001166243, intron 1 of 9)"	AluY|SINE|Alu	48322	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr22.30115917.-	chr22	30115917	30115918	-	0	NA	promoter-TSS (NM_182527)	promoter-TSS (NM_182527)	427	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
chr7.158671018.+	chr7	158671018	158671019	+	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	21749	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr19.45852829.+	chr19	45852829	45852830	+	0	NA	"exon (NM_177417, exon 8 of 13)"	"exon (NM_177417, exon 8 of 13)"	8831	NM_177417	147700	Hs.298079	NM_177417	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
chr2.39384037.-	chr2	39384037	39384038	-	0	NA	Intergenic	AluSx1|SINE|Alu	36433	NM_005633	6654	Hs.732497	NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4	son of sevenless homolog 1 (Drosophila)	protein-coding
chr1.31248129.+	chr1	31248129	31248130	+	0	NA	Intergenic	Intergenic	-17446	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr19.4509085.-	chr19	4509085	4509086	-	0	NA	"intron (NM_001080400, intron 3 of 5)"	AluY|SINE|Alu	-8631	NM_001080400	729359	Hs.591387	NM_001080400	ENSG00000167676	PLIN4	KIAA1881|S3-12	perilipin 4	protein-coding
chr9.34329788.+	chr9	34329788	34329789	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	284	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr1.18015507.+	chr1	18015507	18015508	+	0	NA	"intron (NM_018125, intron 27 of 28)"	MIRb|SINE|MIR	-66301	NM_030812	81569	Hs.2149	NM_030812	ENSG00000117148	ACTL8	CT57	actin-like 8	protein-coding
chr12.33592860.+	chr12	33592860	33592861	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-106	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr1.21380288.-	chr1	21380288	21380289	-	0	NA	"intron (NM_003760, intron 1 of 31)"	SVA_D|Other|Other	-57588	NM_003760	8672	Hs.732241	NM_001198801	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	"eukaryotic translation initiation factor 4 gamma, 3"	protein-coding
chr12.101954472.+	chr12	101954472	101954473	+	0	NA	Intergenic	AluSx|SINE|Alu	-34237	NM_001254721	4604	Hs.654589	NM_001254718	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	"myosin binding protein C, slow type"	protein-coding
chr10.134034481.+	chr10	134034481	134034482	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34067	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr11.33397504.-	chr11	33397504	33397505	-	0	NA	Intergenic	Intergenic	-118336	NM_005734	10114	Hs.201918	NM_001048200	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
chr5.179373551.-	chr5	179373551	179373552	-	0	NA	Intergenic	Intergenic	38695	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr10.118881412.-	chr10	118881412	118881413	-	0	NA	"intron (NM_001258300, intron 1 of 17)"	AluY|SINE|Alu	-4685	NM_001258300	57698	Hs.501140	NM_001127211	ENSG00000187164	KIAA1598	-	KIAA1598	protein-coding
chr8.143694255.+	chr8	143694255	143694256	+	0	NA	"3' UTR (NM_015193, exon 1 of 3)"	"3' UTR (NM_015193, exon 1 of 3)"	1578	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr20.34266485.-	chr20	34266485	34266486	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13607	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr15.41539496.-	chr15	41539496	41539497	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16059	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr4.1721100.+	chr4	1721100	1721101	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	1984	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr9.861784.-	chr9	861784	861785	-	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	-20094	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr20.61763838.-	chr20	61763838	61763839	-	0	NA	Intergenic	Intergenic	30167	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr22.22550471.+	chr22	22550471	22550472	+	0	NA	Intergenic	Intergenic	-48729	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr10.12120424.+	chr10	12120424	12120425	+	0	NA	"intron (NM_018706, intron 1 of 16)"	AluSx|SINE|Alu	9490	NM_018706	55526	Hs.568075	NM_018706	ENSG00000181192	DHTKD1	AMOXAD|CMT2Q	dehydrogenase E1 and transketolase domain containing 1	protein-coding
chr1.9517585.+	chr1	9517585	9517586	+	0	NA	Intergenic	AluJb|SINE|Alu	-81943	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr18.5524276.+	chr18	5524276	5524277	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19710	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr2.173941049.+	chr2	173941049	173941050	+	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	484	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr1.218165418.-	chr1	218165418	218165419	-	0	NA	Intergenic	AluSq|SINE|Alu	-99176	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr16.692453.-	chr16	692453	692454	-	0	NA	"intron (NM_138418, intron 2 of 4)"	CpG-8444	-604	NM_138418	84331	Hs.706105	NM_138418	ENSG00000172366	FAM195A	C16orf14|c349E10.1	"family with sequence similarity 195, member A"	protein-coding
chr2.467142.+	chr2	467142	467143	+	0	NA	Intergenic	Intergenic	-178834	NM_001002919	285016	Hs.355207	NM_001002919	ENSG00000189292	FAM150B	PRO1097|RGPG542	"family with sequence similarity 150, member B"	protein-coding
chr17.31565665.-	chr17	31565665	31565666	-	0	NA	"intron (NM_001094, intron 1 of 9)"	L2a|LINE|L2	-54341	NM_183377	40	Hs.368417	NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
chr19.18180419.+	chr19	18180419	18180420	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17278	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr3.47865634.+	chr3	47865634	47865635	+	0	NA	"intron (NM_014966, intron 5 of 22)"	AluSx|SINE|Alu	21235	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|RETCOR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding
chr12.112161136.+	chr12	112161136	112161137	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37279	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr2.218944870.-	chr2	218944870	218944871	-	0	NA	"intron (NR_034176, intron 11 of 13)"	"intron (NR_034176, intron 11 of 13)"	-11132	NM_198483	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
chr22.18892185.+	chr22	18892185	18892186	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1551	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr12.4382907.+	chr12	4382907	4382908	+	0	NA	promoter-TSS (NM_001759)	promoter-TSS (NM_001759)	5	NM_001759	894	Hs.376071	NM_001759	ENSG00000118971	CCND2	KIAK0002	cyclin D2	protein-coding
chr1.937287.+	chr1	937287	937288	+	0	NA	Intergenic	CpG-24	-1735	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr2.45870639.+	chr2	45870639	45870640	+	0	NA	Intergenic	Intergenic	-8404	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	"protein kinase C, epsilon"	protein-coding
chr3.48742392.-	chr3	48742392	48742393	-	0	NA	"intron (NM_001005910, intron 1 of 2)"	AluY|SINE|Alu	-12319	NM_001146179	51447	Hs.595983	NM_001005909	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
chr3.128194247.+	chr3	128194247	128194248	+	0	NA	Intergenic	Intergenic	-8156	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr14.80915486.-	chr14	80915486	80915487	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218089	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr19.10570886.-	chr19	10570886	10570887	-	0	NA	"intron (NM_006202, intron 5 of 9)"	"intron (NM_006202, intron 5 of 9)"	-7253	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr5.54831079.-	chr5	54831079	54831080	-	0	NA	promoter-TSS (NM_003711)	promoter-TSS (NM_003711)	206	NM_176895	8611	Hs.696231	NM_003711	ENSG00000067113	PPAP2A	LLP1a|LPP1|PAP-2a|PAP2|PAP2a2|PAP2alpha2|PAPalpha1	phosphatidic acid phosphatase type 2A	protein-coding
chr12.66768120.+	chr12	66768120	66768121	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71785	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr16.1815022.+	chr16	1815022	1815023	+	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	6688	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr12.133328169.-	chr12	133328169	133328170	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10282	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr18.12390631.-	chr18	12390631	12390632	-	0	NA	Intergenic	AluSx1|SINE|Alu	13356	NM_006796	10939	Hs.726355	NM_006796	ENSG00000141385	AFG3L2	SCA28|SPAX5	AFG3 ATPase family member 3-like 2 (S. cerevisiae)	protein-coding
chr3.71746095.+	chr3	71746095	71746096	+	0	NA	"intron (NM_001134650, intron 4 of 7)"	AluY|SINE|Alu	28431	NM_001134651	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr6.170480307.+	chr6	170480307	170480308	+	0	NA	Intergenic	Intergenic	91350	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr19.10041341.+	chr19	10041341	10041342	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5729	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr17.74865034.-	chr17	74865034	74865035	-	0	NA	"5' UTR (NM_144677, exon 1 of 17)"	"5' UTR (NM_144677, exon 1 of 17)"	-236	NM_144677	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr7.1590464.+	chr7	1590464	1590465	+	0	NA	"exon (NM_001097620, exon 3 of 9)"	"exon (NM_001097620, exon 3 of 9)"	5602	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr8.17013855.+	chr8	17013855	17013856	+	0	NA	promoter-TSS (NM_016353)	promoter-TSS (NM_016353)	19	NM_016353	51201	Hs.744097	NM_016353		ZDHHC2	DHHC2|ZNF372	"zinc finger, DHHC-type containing 2"	protein-coding
chr1.16166950.+	chr1	16166950	16166951	+	0	NA	"intron (NR_024279, intron 1 of 1)"	AluSc8|SINE|Alu	-7409	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chrX.120213529.-	chrX	120213529	120213530	-	0	NA	Intergenic	AluY|SINE|Alu	-32067	NM_012084	2747	Hs.368538	NM_012084	ENSG00000182890	GLUD2	GDH2|GLUDP1	glutamate dehydrogenase 2	protein-coding
chr4.186887779.-	chr4	186887779	186887780	-	0	NA	Intergenic	AluSx1|SINE|Alu	9909	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr20.60872147.+	chr20	60872147	60872148	+	0	NA	TTS (NM_144498)	TTS (NM_144498)	-5880	NM_175573	11047	Hs.90107	NM_007002	ENSG00000130706	ADRM1	ARM1|GP110|Rpn13	adhesion regulating molecule 1	protein-coding
chr16.89342497.+	chr16	89342497	89342498	+	0	NA	"intron (NM_001256182, intron 10 of 13)"	"intron (NM_001256182, intron 10 of 13)"	-45044	NM_001242885	100287036	Hs.656995	NM_001242885		LOC100287036	-	uncharacterized LOC100287036	protein-coding
chr6.151727638.+	chr6	151727638	151727639	+	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	-14961	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr17.65774774.+	chr17	65774774	65774775	+	0	NA	Intergenic	AluSx|SINE|Alu	37988	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr18.33709906.+	chr18	33709906	33709907	+	0	NA	promoter-TSS (NM_001242877)	promoter-TSS (NM_001242877)	69	NR_040110	55250	Hs.8739	NM_001242875	ENSG00000134759	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
chr19.23432245.-	chr19	23432245	23432246	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-927	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr1.160239884.-	chr1	160239884	160239885	-	0	NA	Intergenic	AluJo|SINE|Alu	7534	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr1.110881065.-	chr1	110881065	110881066	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-728	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr17.46186993.-	chr17	46186993	46186994	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2046	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chr2.20424079.-	chr2	20424079	20424080	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-848	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr18.66365998.+	chr18	66365998	66365999	+	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	16355	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr5.2860473.-	chr5	2860473	2860474	-	0	NA	Intergenic	Intergenic	-108211	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr1.7952804.+	chr1	7952804	7952805	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39253	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr8.98771769.+	chr8	98771769	98771770	+	0	NA	Intergenic	AluSq10|SINE|Alu	-16040	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr1.21829536.+	chr1	21829536	21829537	+	0	NA	Intergenic	SVA_C|Other|Other	-6322	NM_001127501	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr5.17207806.+	chr5	17207806	17207807	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9126	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr11.63976076.+	chr11	63976076	63976077	+	0	NA	"intron (NM_178443, intron 2 of 14)"	"intron (NM_178443, intron 2 of 14)"	1924	NM_031471	83706	Hs.180535	NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	fermitin family member 3	protein-coding
chr12.53443911.+	chr12	53443911	53443912	+	0	NA	promoter-TSS (NM_170754)	promoter-TSS (NM_170754)	76	NM_170754	23371	Hs.343334	NM_015319	ENSG00000111077	TENC1	C1-TEN|C1TEN|TNS2	tensin like C1 domain containing phosphatase (tensin 2)	protein-coding
chr5.22972647.+	chr5	22972647	22972648	+	0	NA	Intergenic	AluSx3|SINE|Alu	-118916	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	"cadherin 12, type 2 (N-cadherin 2)"	protein-coding
chr19.41641957.+	chr19	41641957	41641958	+	0	NA	Intergenic	CpG	21604	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr22.46303155.-	chr22	46303155	46303156	-	0	NA	Intergenic	Intergenic	-69853	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr7.55412209.+	chr7	55412209	55412210	+	0	NA	Intergenic	CpG	-20932	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr12.31229251.+	chr12	31229251	31229252	+	0	NA	"intron (NM_004399, intron 1 of 25)"	MLT1M|LTR|ERVL-MaLR	-2470	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	-	DDX11 antisense RNA 1	miscRNA
chr19.53852805.+	chr19	53852805	53852806	+	0	NA	"intron (NM_138374, intron 3 of 3)"	AluY|SINE|Alu	15803	NM_138374	91664	Hs.720672	NM_138374	ENSG00000213799	ZNF845	-	zinc finger protein 845	protein-coding
chr10.71993243.-	chr10	71993243	71993244	-	0	NA	promoter-TSS (NM_021129)	promoter-TSS (NM_021129)	53	NM_021129	5464	Hs.437403	NM_021129	ENSG00000180817	PPA1	IOPPP|PP|PP1|SID6-8061	pyrophosphatase (inorganic) 1	protein-coding
chr1.142618965.-	chr1	142618965	142618966	-	0	NA	Intergenic	CpG	-94640	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	"ankyrin repeat domain 20 family, member A12, pseudogene"	pseudo
chr1.170388426.+	chr1	170388426	170388427	+	0	NA	Intergenic	SVA_D|Other|Other	-112837	NR_027397	92344	Hs.183702	NM_001146039	ENSG00000120370	GORAB	GO|NTKLBP1|SCYL1BP1	"golgin, RAB6-interacting"	protein-coding
chr1.3022451.-	chr1	3022451	3022452	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	22088	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr3.174240478.-	chr3	174240478	174240479	-	0	NA	Intergenic	AluY|SINE|Alu	336633	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr2.151299714.-	chr2	151299714	151299715	-	0	NA	Intergenic	AluY|SINE|Alu	-44495	NM_005168	390	Hs.6838	NM_001254738	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
chr14.50838445.+	chr14	50838445	50838446	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24172	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr2.71559408.+	chr2	71559408	71559409	+	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	523	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr10.104238440.+	chr10	104238440	104238441	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17270	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr11.100596564.-	chr11	100596564	100596565	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38157	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr18.44499434.+	chr18	44499434	44499435	+	0	NA	Intergenic	AluSp|SINE|Alu	-1939	NM_004671	9063	Hs.657844	NM_004671		PIAS2	ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4	"protein inhibitor of activated STAT, 2"	protein-coding
chr21.43198304.-	chr21	43198304	43198305	-	0	NA	Intergenic	Intergenic	11055	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr22.22259572.-	chr22	22259572	22259573	-	0	NA	Intergenic	AluSq2|SINE|Alu	37602	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr1.151573447.-	chr1	151573447	151573448	-	0	NA	Intergenic	SVA_E|Other|Other	11215	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr19.8424309.+	chr19	8424309	8424310	+	0	NA	Intergenic	AluSz|SINE|Alu	-4702	NM_139314	51129	Hs.9613	NM_001039667	ENSG00000167772	ANGPTL4	ANGPTL2|ARP4|FIAF|HFARP|NL2|PGAR|pp1158	angiopoietin-like 4	protein-coding
chrX.98017376.+	chrX	98017376	98017377	+	0	NA	Intergenic	AluYa5|SINE|Alu	1177465	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr20.45571695.+	chr20	45571695	45571696	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48432	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr8.144546603.-	chr8	144546603	144546604	-	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	34001	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr11.1035107.-	chr11	1035107	1035108	-	0	NA	"intron (NM_005961, intron 1 of 32)"	CpG	-1599	NM_005961	4588	Hs.528432	NM_005961	ENSG00000184956	MUC6	MUC-6	"mucin 6, oligomeric mucus/gel-forming"	protein-coding
chr22.18652455.+	chr22	18652455	18652456	+	0	NA	"intron (NM_017414, intron 6 of 10)"	MSTA|LTR|ERVL-MaLR	19697	NM_017414	11274	Hs.38260	NM_017414	ENSG00000184979	USP18	ISG43|UBP43	ubiquitin specific peptidase 18	protein-coding
chr15.89714210.-	chr15	89714210	89714211	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50712	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr1.6094713.+	chr1	6094713	6094714	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	365	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr3.160673513.-	chr3	160673513	160673514	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149170	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr8.23097405.-	chr8	23097405	23097406	-	0	NA	Intergenic	AluY|SINE|Alu	3745	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr19.4065750.-	chr19	4065750	4065751	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1066	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr2.176809832.-	chr2	176809832	176809833	-	0	NA	"intron (NM_030650, intron 9 of 12)"	AluSx1|SINE|Alu	-57186	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|Ul|ulnaless	KIAA1715	protein-coding
chr5.149844145.+	chr5	149844145	149844146	+	0	NA	Intergenic	Intergenic	-14826	NM_001025070	6208	Hs.381126	NM_001025070	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
chr3.50540589.+	chr3	50540589	50540590	+	0	NA	"intron (NM_001005505, intron 1 of 37)"	CpG	303	NM_001174051	9254	Hs.674666	NM_001005505	ENSG00000007402	CACNA2D2	CACNA2D|LUAC11.1	"calcium channel, voltage-dependent, alpha 2/delta subunit 2"	protein-coding
chr19.644312.-	chr19	644312	644313	-	0	NA	TTS (NM_020637)	TTS (NM_020637)	-4386	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr6.151727565.+	chr6	151727565	151727566	+	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	-14888	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr5.91967065.-	chr5	91967065	91967066	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-939434	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr7.56109611.+	chr7	56109611	56109612	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9657	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr3.112807986.-	chr3	112807986	112807987	-	0	NA	Intergenic	AluYc|SINE|Alu	69431	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr17.810093.-	chr17	810093	810094	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42742	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr12.54218619.+	chr12	54218619	54218620	+	0	NA	Intergenic	AluSp|SINE|Alu	-97312	NM_001143682	57658	Hs.156667	NM_001143682	ENSG00000012822	CALCOCO1	Cocoa|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
chr2.208031295.-	chr2	208031295	208031296	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-285	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chrX.113575462.+	chrX	113575462	113575463	+	0	NA	Intergenic	AluJb|SINE|Alu	-243089	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr19.2492347.+	chr19	2492347	2492348	+	0	NA	Intergenic	AluSz|SINE|Alu	16224	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr10.26604624.+	chr10	26604624	26604625	+	0	NA	Intergenic	AluSx1|SINE|Alu	99388	NM_001134366	2572	Hs.231829	NM_000818	ENSG00000136750	GAD2	GAD65	"glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)"	protein-coding
chr20.62127636.-	chr20	62127636	62127637	-	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	-3032	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr1.32679407.+	chr1	32679407	32679408	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4712	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr19.49061666.+	chr19	49061666	49061667	+	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	6237	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr12.111714728.-	chr12	111714728	111714729	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92197	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr1.10727889.+	chr1	10727889	10727890	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128844	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr6.34857481.-	chr6	34857481	34857482	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-443	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr11.62551824.+	chr11	62551824	62551825	+	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	-3050	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr20.25293103.-	chr20	25293103	25293104	-	0	NA	"intron (NM_001042472, intron 6 of 12)"	SVA_C|Other|Other	-64397	NM_002862	5834	Hs.368157	NM_002862	ENSG00000100994	PYGB	GPBB	"phosphorylase, glycogen; brain"	protein-coding
chr2.128430577.+	chr2	128430577	128430578	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2187	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr11.64819784.+	chr11	64819784	64819785	+	0	NA	"intron (NM_005468, intron 8 of 17)"	L2c|LINE|L2	6225	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr11.68671202.+	chr11	68671202	68671203	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	101	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr8.10572933.-	chr8	10572933	10572934	-	0	NA	Intergenic	Intergenic	-15089	NM_031439	83595	Hs.709543	NM_031439	ENSG00000171056	SOX7	-	SRY (sex determining region Y)-box 7	protein-coding
chr3.36494775.+	chr3	36494775	36494776	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72678	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr19.53979638.-	chr19	53979638	53979639	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8649	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr7.5356003.+	chr7	5356003	5356004	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	33442	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr7.3124645.+	chr7	3124645	3124646	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41136	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr19.19754436.-	chr19	19754436	19754437	-	0	NA	promoter-TSS (NM_016573)	promoter-TSS (NM_016573)	-19	NM_016573	51291	Hs.49427	NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
chr5.114712370.-	chr5	114712370	114712371	-	0	NA	Intergenic	MIRb|SINE|MIR	79912	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr2.109985519.-	chr2	109985519	109985520	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55438	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr15.55726782.+	chr15	55726782	55726783	+	0	NA	"intron (NR_037923, intron 7 of 15)"	BC200|scRNA|scRNA	26059	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr2.202046055.-	chr2	202046055	202046056	-	0	NA	Intergenic	AluSz|SINE|Alu	1566	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr4.174464007.+	chr4	174464007	174464008	+	0	NA	Intergenic	AluSp|SINE|Alu	12398	NR_003679	79804	Hs.61435	NR_003679	ENSG00000237125	NBLA00301	DEIN	Nbla00301	miscRNA
chr15.91471056.+	chr15	91471056	91471057	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2354	NM_001039675	55898	Hs.389461	NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|SMAP-1|SMAP1	unc-45 homolog A (C. elegans)	protein-coding
chr2.87575829.+	chr2	87575829	87575830	+	0	NA	Intergenic	TAR1|Satellite|telo	-179145	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr21.20831242.+	chr21	20831242	20831243	+	0	NA	Intergenic	AluYf4|SINE|Alu	-1055272	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chrM.4448.-	chrM	4448	4449	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.12141444.+	chr1	12141444	12141445	+	0	NA	"intron (NM_001243, intron 1 of 14)"	"intron (NM_001243, intron 1 of 14)"	18010	NM_001243	943	Hs.1314	NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	"tumor necrosis factor receptor superfamily, member 8"	protein-coding
chr16.19394757.-	chr16	19394757	19394758	-	0	NA	Intergenic	Intergenic	27300	NM_001105249	79838	Hs.115838	NM_001105248	ENSG00000103534	TMC5	-	transmembrane channel-like 5	protein-coding
chr19.3219065.-	chr19	3219065	3219066	-	0	NA	Intergenic	AluY|SINE|Alu	5636	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr1.24127455.-	chr1	24127455	24127456	-	0	NA	promoter-TSS (NM_000403)	promoter-TSS (NM_000403)	161	NM_001008216	2582	Hs.632380	NM_000403	ENSG00000117308	GALE	SDR1E1	UDP-galactose-4-epimerase	protein-coding
chr19.11060486.-	chr19	11060486	11060487	-	0	NA	Intergenic	AluY|SINE|Alu	11112	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr21.46383140.+	chr21	46383140	46383141	+	0	NA	"intron (NM_058190, intron 3 of 5)"	AluY|SINE|Alu	23185	NM_058190	85395	Hs.410830	NM_058190	ENSG00000160256	FAM207A	C21orf70	"family with sequence similarity 207, member A"	protein-coding
chr16.31449015.+	chr16	31449015	31449016	+	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	5333	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr9.76965996.+	chr9	76965996	76965997	+	0	NA	Intergenic	AluSp|SINE|Alu	-146256	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr5.3764247.-	chr5	3764247	3764248	-	0	NA	Intergenic	Intergenic	-168079	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr11.9287198.-	chr11	9287198	9287199	-	0	NA	promoter-TSS (NM_001243254)	promoter-TSS (NM_001243254)	325	NM_015213	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr20.38570864.+	chr20	38570864	38570865	+	0	NA	Intergenic	AluYg6|SINE|Alu	-717473	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	miscRNA
chr2.203038189.-	chr2	203038189	203038190	-	0	NA	"intron (NM_001277372, intron 15 of 21)"	AluSp|SINE|Alu	-65133	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr9.6559773.-	chr9	6559773	6559774	-	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	-85919	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr9.72286968.-	chr9	72286968	72286969	-	0	NA	"intron (NM_001163, intron 1 of 12)"	CpG	-307	NM_001163	320	Hs.592974	NM_001163		APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	"amyloid beta (A4) precursor protein-binding, family A, member 1"	protein-coding
chr5.1345503.-	chr5	1345503	1345504	-	0	NA	promoter-TSS (NM_030782)	promoter-TSS (NM_030782)	501	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1-like	protein-coding
chr9.138663338.-	chr9	138663338	138663339	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69307	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr16.87091630.-	chr16	87091630	87091631	-	0	NA	Intergenic	Intergenic	-259396	NM_001256917	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr15.37172803.-	chr15	37172803	37172804	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5931	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr11.70382482.+	chr11	70382482	70382483	+	0	NA	"intron (NM_012309, intron 14 of 22)"	"intron (NM_012309, intron 14 of 22)"	-94717	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	miscRNA
chr21.34638601.+	chr21	34638601	34638602	+	0	NA	promoter-TSS (NM_000628)	promoter-TSS (NM_000628)	-36	NR_038974	100288432	Hs.709795	NR_038974		LOC100288432	-	uncharacterized LOC100288432	miscRNA
chr8.23131090.-	chr8	23131090	23131091	-	0	NA	Intergenic	AluSc8|SINE|Alu	14522	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr9.6559762.-	chr9	6559762	6559763	-	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	-85930	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr2.239959404.+	chr2	239959404	239959405	+	0	NA	Intergenic	MER74A|LTR|ERVL	31206	NR_039642	100616397		NR_039642		MIR4440	-	microRNA 4440	miscRNA
chr11.71230045.-	chr11	71230045	71230046	-	0	NA	Intergenic	CpG	8268	NM_001012503	440050	Hs.710675	NM_001012503	ENSG00000244411	KRTAP5-7	KRTAP5-3|KRTAP5.7	keratin associated protein 5-7	protein-coding
chr2.115328225.+	chr2	115328225	115328226	+	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	109045	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr2.905798.+	chr2	905798	905799	+	0	NA	Intergenic	Intergenic	-40756	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr12.133081823.-	chr12	133081823	133081824	-	0	NA	"intron (NM_001142641, intron 1 of 16)"	"intron (NM_001142641, intron 1 of 16)"	-14666	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr22.24408050.-	chr22	24408050	24408051	-	0	NA	"5' UTR (NM_001199281, exon 1 of 37)"	"5' UTR (NM_001199281, exon 1 of 37)"	-230	NM_001199281	23523	Hs.517478	NM_001199281	ENSG00000099991	CABIN1	CAIN|PPP3IN	calcineurin binding protein 1	protein-coding
chr3.36494771.-	chr3	36494771	36494772	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72674	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr2.71357900.-	chr2	71357900	71357901	-	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-456	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr1.25736506.+	chr1	25736506	25736507	+	0	NA	"intron (NM_020485, intron 1 of 9)"	AluSq2|SINE|Alu	10857	NM_138617	6006	Hs.523054	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	"Rh blood group, CcEe antigens"	protein-coding
chr1.200456598.-	chr1	200456598	200456599	-	0	NA	Intergenic	AluY|SINE|Alu	77432	NM_012482	23528	Hs.735801	NM_012482	ENSG00000162702	ZNF281	ZBP-99|ZNP-99	zinc finger protein 281	protein-coding
chr8.141030078.+	chr8	141030078	141030079	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314779	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr1.27503560.+	chr1	27503560	27503561	+	0	NA	Intergenic	Intergenic	-21939	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chrM.9329.+	chrM	9329	9330	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr5.176337831.+	chr5	176337831	176337832	+	0	NA	"intron (NM_001199297, intron 12 of 15)"	AluSp|SINE|Alu	-11498	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr16.5071260.-	chr16	5071260	5071261	-	0	NA	Intergenic	AluJb|SINE|Alu	12443	NR_038913	100507589	Hs.729936	NR_038913		NAGPA-AS1	-	NAGPA antisense RNA 1	miscRNA
chr20.46387690.-	chr20	46387690	46387691	-	0	NA	"intron (NM_198596, intron 1 of 20)"	"intron (NM_198596, intron 1 of 20)"	-27118	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr7.1474521.+	chr7	1474521	1474522	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24588	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr16.32485501.+	chr16	32485501	32485502	+	0	NA	Intergenic	Intergenic	-184199	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr16.31712221.+	chr16	31712221	31712222	+	0	NA	"intron (NR_024034, intron 1 of 8)"	CpG	287	NR_024034	100132341	Hs.715792	NR_024034	ENSG00000131797	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3	clustered mitochondria (cluA/CLU1) homolog pseudogene 3	miscRNA
chr2.129491291.+	chr2	129491291	129491292	+	0	NA	Intergenic	Intergenic	-415120	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr11.124273646.+	chr11	124273646	124273647	+	0	NA	Intergenic	SVA_C|Other|Other	-6399	NM_001005467	390271	Hs.690456	NM_001005467	ENSG00000196661	OR8B3	OR11-311	"olfactory receptor, family 8, subfamily B, member 3"	protein-coding
chr20.46019542.+	chr20	46019542	46019543	+	0	NA	Intergenic	AluY|SINE|Alu	-34068	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr4.41216027.-	chr4	41216027	41216028	-	0	NA	"intron (NM_173075, intron 1 of 16)"	CpG	-608	NM_001166050	323	Hs.479602	NM_001166050	ENSG00000163697	APBB2	FE65L|FE65L1	"amyloid beta (A4) precursor protein-binding, family B, member 2"	protein-coding
chr20.62111459.+	chr20	62111459	62111460	+	0	NA	Intergenic	CpG	-7466	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr2.230579979.-	chr2	230579979	230579980	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	693	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr7.7606525.+	chr7	7606525	7606526	+	0	NA	promoter-TSS (NM_019005)	promoter-TSS (NM_019005)	-91	NM_019005	54468	Hs.520215	NM_019005	ENSG00000164654	MIOS	-	"missing oocyte, meiosis regulator, homolog (Drosophila)"	protein-coding
chr15.83365823.-	chr15	83365823	83365824	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12812	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr2.47596448.-	chr2	47596448	47596449	-	0	NA	"5' UTR (NM_002354, exon 1 of 9)"	"5' UTR (NM_002354, exon 1 of 9)"	-161	NM_002354	4072	Hs.542050	NM_002354	ENSG00000119888	EPCAM	DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1	epithelial cell adhesion molecule	protein-coding
chr12.105375625.-	chr12	105375625	105375626	-	0	NA	Intergenic	AluSx3|SINE|Alu	4473	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr3.12046516.+	chr3	12046516	12046517	+	0	NA	"intron (NM_133625, intron 2 of 13)"	CpG-18235	654	NM_133625	6854	Hs.445503	NM_003178		SYN2	SYNII|SYNIIa|SYNIIb	synapsin II	protein-coding
chr2.64811852.-	chr2	64811852	64811853	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22594	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr9.108210392.-	chr9	108210392	108210393	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-67	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr14.76127590.-	chr14	76127590	76127591	-	0	NA	promoter-TSS (NM_015072)	promoter-TSS (NM_015072)	-39	NM_015072	23093	Hs.709609	NM_015072	ENSG00000119685	TTLL5	KIAA0998|STAMP	"tubulin tyrosine ligase-like family, member 5"	protein-coding
chr5.1770139.-	chr5	1770139	1770140	-	0	NA	Intergenic	L1MB5|LINE|L1	-29817	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr9.35728489.+	chr9	35728489	35728490	+	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	-3828	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr19.47628009.-	chr19	47628009	47628010	-	0	NA	Intergenic	AluY|SINE|Alu	6071	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr5.18111519.-	chr5	18111519	18111520	-	0	NA	Intergenic	AluY|SINE|Alu	724100	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr1.10989816.+	chr1	10989816	10989817	+	0	NA	Intergenic	AluSq|SINE|Alu	52278	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chr2.242836731.-	chr2	242836731	242836732	-	0	NA	Intergenic	Intergenic	-24845	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr12.34500228.-	chr12	34500228	34500229	-	0	NA	Intergenic	Intergenic	-325012	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.586972.+	chr19	586972	586973	+	0	NA	Intergenic	L2b|LINE|L2	-2921	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr22.20104733.-	chr22	20104733	20104734	-	0	NA	promoter-TSS (NM_022727)	promoter-TSS (NM_022727)	-85	NM_022727	27037	Hs.713579	NM_001257994	ENSG00000099899	TRMT2A	HTF9C	tRNA methyltransferase 2 homolog A (S. cerevisiae)	protein-coding
chr16.11592099.-	chr16	11592099	11592100	-	0	NA	Intergenic	AluSx|SINE|Alu	-88130	NM_004862	9516	Hs.459940	NM_001136472	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide-induced TNF factor	protein-coding
chr2.202898646.-	chr2	202898646	202898647	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	664	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr12.51681483.+	chr12	51681483	51681484	+	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	-17281	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr17.74707144.+	chr17	74707144	74707145	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-88	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr18.66366000.+	chr18	66366000	66366001	+	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	16353	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr8.23131082.-	chr8	23131082	23131083	-	0	NA	Intergenic	AluSc8|SINE|Alu	14530	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr1.17029628.+	chr1	17029628	17029629	+	0	NA	"intron (NR_026567, intron 5 of 10)"	"intron (NR_026567, intron 5 of 10)"	17024	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr3.149374891.-	chr3	149374891	149374892	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-921	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr17.28267921.-	chr17	28267921	28267922	-	0	NA	promoter-TSS (NR_026738)	promoter-TSS (NR_026738)	702	NM_198529	374786	Hs.662411	NM_001033562	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
chr15.41674356.+	chr15	41674356	41674357	+	0	NA	Intergenic	SVA_F|Other|Other	20302	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr2.223163350.+	chr2	223163350	223163351	+	0	NA	"5' UTR (NM_181460, exon 1 of 9)"	"5' UTR (NM_181460, exon 1 of 9)"	365	NM_181457	5077	Hs.42146	NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|WS1|WS3	paired box 3	protein-coding
chr9.100747338.+	chr9	100747338	100747339	+	0	NA	"intron (NM_006401, intron 1 of 6)"	CpG	1849	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	"acidic (leucine-rich) nuclear phosphoprotein 32 family, member B"	protein-coding
chr11.17160908.-	chr11	17160908	17160909	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30446	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chrX.29649795.+	chrX	29649795	29649796	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-583880	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr10.121799466.+	chr10	121799466	121799467	+	0	NA	Intergenic	AluSz6|SINE|Alu	81441	NR_039830	100616322		NR_039830	ENSG00000265370	MIR4682	-	microRNA 4682	miscRNA
chr5.65936242.+	chr5	65936242	65936243	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44066	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr4.166248589.-	chr4	166248589	166248590	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	229	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr2.235844060.+	chr2	235844060	235844061	+	0	NA	Intergenic	Intergenic	-16568	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr7.33164258.+	chr7	33164258	33164259	+	0	NA	Intergenic	AluYf5|SINE|Alu	-4894	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr10.102037186.+	chr10	102037186	102037187	+	0	NA	"intron (NM_173809, intron 4 of 4)"	SVA_D|Other|Other	8930	NR_046296	282991	Hs.34906	NM_001001342		BLOC1S2	BLOS2|RP11-316M21.4	"biogenesis of lysosomal organelles complex-1, subunit 2"	protein-coding
chr1.113336920.-	chr1	113336920	113336921	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73731	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr3.195498055.-	chr3	195498055	195498056	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40789	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr7.150812753.-	chr7	150812753	150812754	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28927	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr16.30569639.+	chr16	30569639	30569640	+	0	NA	promoter-TSS (NM_001172679)	promoter-TSS (NM_001172679)	3	NM_033410	92595	Hs.132227	NM_001172679	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
chr10.71168767.+	chr10	71168767	71168768	+	0	NA	"exon (NM_001057, exon 3 of 5)"	"exon (NM_001057, exon 3 of 5)"	7907	NM_001057	6865	Hs.88372	NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
chr8.16116113.-	chr8	16116113	16116114	-	0	NA	Intergenic	AluSx3|SINE|Alu	65813	NM_138715	4481	Hs.147635	NM_002445	ENSG00000038945	MSR1	CD204|SCARA1|SR-A|SRA|phSR1|phSR2	macrophage scavenger receptor 1	protein-coding
chr19.50614636.+	chr19	50614636	50614637	+	0	NA	TTS (NR_024214).7	TTS (NR_024214).7	1109	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr1.183259268.-	chr1	183259268	183259269	-	0	NA	"exon (NM_170706, exon 4 of 11)"	"exon (NM_170706, exon 4 of 11)"	-14741	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr13.103088658.-	chr13	103088658	103088659	-	0	NA	Intergenic	AluY|SINE|Alu	34534	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr16.1228060.+	chr16	1228060	1228061	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24819	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr12.38493573.+	chr12	38493573	38493574	+	0	NA	Intergenic	Intergenic	-216984	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr22.49833805.-	chr22	49833805	49833806	-	0	NA	Intergenic	AluSx|SINE|Alu	-217385	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr22.49880385.+	chr22	49880385	49880386	+	0	NA	Intergenic	AluSx1|SINE|Alu	170805	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr9.77401547.-	chr9	77401547	77401548	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100716	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr10.104238459.-	chr10	104238459	104238460	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17289	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr16.67948381.-	chr16	67948381	67948382	-	0	NA	"intron (NM_006742, intron 2 of 2)"	AluSx|SINE|Alu	-17397	NM_001907	1506	Hs.654546	NM_001907		CTRL	CTRL1	chymotrypsin-like	protein-coding
chr9.90472372.-	chr9	90472372	90472373	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1599	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chr16.1821686.-	chr16	1821686	1821687	-	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	-24	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr17.81153668.-	chr17	81153668	81153669	-	0	NA	Intergenic	Intergenic	20998	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
chr11.31560732.-	chr11	31560732	31560733	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29435	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr22.34378923.+	chr22	34378923	34378924	+	0	NA	Intergenic	AluSx1|SINE|Alu	-62507	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr2.151299716.+	chr2	151299716	151299717	+	0	NA	Intergenic	AluY|SINE|Alu	44493	NM_005168	390	Hs.6838	NM_001254738	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
chr2.27526300.+	chr2	27526300	27526301	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4830	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr2.47661296.-	chr2	47661296	47661297	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31090	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr21.11149445.-	chr21	11149445	11149446	-	0	NA	Intergenic	AluY|SINE|Alu	50508	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chrX.47230733.-	chrX	47230733	47230734	-	0	NA	"intron (NM_003446, intron 1 of 3)"	AluSz|SINE|Alu	-734	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr16.6394580.-	chr16	6394580	6394581	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluY|SINE|Alu	-325448	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr14.77743568.+	chr14	77743568	77743569	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5913	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr17.74707126.+	chr17	74707126	74707127	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-70	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr3.126260568.+	chr3	126260568	126260569	+	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	17190	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chrX.29933164.+	chrX	29933164	29933165	+	0	NA	"intron (NM_014271, intron 6 of 10)"	AluSx3|SINE|Alu	-300511	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr6.57322569.+	chr6	57322569	57322570	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140147	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr16.28223124.-	chr16	28223124	28223125	-	0	NA	"5' UTR (NM_015171, exon 1 of 24)"	"5' UTR (NM_015171, exon 1 of 24)"	-115	NM_001270940	23214	Hs.460468	NM_001270940	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
chr12.96794099.-	chr12	96794099	96794100	-	0	NA	"5' UTR (NM_001170464, exon 1 of 16)"	"5' UTR (NM_001170464, exon 1 of 16)"	-267	NM_002595	5128	Hs.506415	NM_001170464	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
chr1.57087953.+	chr1	57087953	57087954	+	0	NA	Intergenic	AluSz|SINE|Alu	-23037	NM_006252	5563	Hs.437039	NM_006252	ENSG00000162409	PRKAA2	AMPK|AMPK2|AMPKa2|PRKAA	"protein kinase, AMP-activated, alpha 2 catalytic subunit"	protein-coding
chr2.85554165.+	chr2	85554165	85554166	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1254	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr8.22441042.-	chr8	22441042	22441043	-	0	NA	"intron (NM_198042, intron 2 of 7)"	AluSx1|SINE|Alu	-3055	NM_176871	64236	Hs.632034	NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2 (mystique)	protein-coding
chr7.56888224.+	chr7	56888224	56888225	+	0	NA	Intergenic	Intergenic	61615	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr6.166644123.-	chr6	166644123	166644124	-	0	NA	Intergenic	AluYk4|SINE|Alu	61966	NM_003181	6862	Hs.742027	NM_001270484	ENSG00000164458	T	TFT	"T, brachyury homolog (mouse)"	protein-coding
chr3.38106437.-	chr3	38106437	38106438	-	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	-25741	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr15.75701818.+	chr15	75701818	75701819	+	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	-40850	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr5.171395378.+	chr5	171395378	171395379	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38499	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr3.46717859.+	chr3	46717859	46717860	+	0	NA	"exon (NM_001190707, exon 19 of 26)"	"exon (NM_001190707, exon 19 of 26)"	1040	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr22.50580055.+	chr22	50580055	50580056	+	0	NA	"intron (NM_001164104, intron 15 of 25)"	AluJb|SINE|Alu	-5429	NM_001164106	54456	Hs.62880	NM_001164104	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	"Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)"	protein-coding
chr1.49045398.-	chr1	49045398	49045399	-	0	NA	"intron (NM_032785, intron 11 of 13)"	AluY|SINE|Alu	107522	NM_019073	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
chr3.31574366.+	chr3	31574366	31574367	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-125	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr9.139546276.-	chr9	139546276	139546277	-	0	NA	Intergenic	AluSz|SINE|Alu	7032	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr2.65216454.-	chr2	65216454	65216455	-	0	NA	promoter-TSS (NM_003038)	promoter-TSS (NM_003038)	41	NM_003038	6509	Hs.654352	NM_001135581	ENSG00000115902	SLC1A4	ASCT1|SATT	"solute carrier family 1 (glutamate/neutral amino acid transporter), member 4"	protein-coding
chr17.48631015.+	chr17	48631015	48631016	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6565	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr2.70133287.-	chr2	70133287	70133288	-	0	NA	TTS (NM_006857)	TTS (NM_006857)	8886	NM_001202514	4084	Hs.468908	NM_001202513	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
chr17.57868943.+	chr17	57868943	57868944	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49684	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr12.38493583.-	chr12	38493583	38493584	-	0	NA	Intergenic	Intergenic	216974	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr16.31103084.+	chr16	31103084	31103085	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2954	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr5.133831526.-	chr5	133831526	133831527	-	0	NA	Intergenic	AluY|SINE|Alu	30272	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr19.31839864.+	chr19	31839864	31839865	+	0	NA	"intron (NM_020856, intron 1 of 1)"	CpG	326	NM_020856	57616	Hs.278436	NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
chr6.3179548.+	chr6	3179548	3179549	+	0	NA	Intergenic	AluY|SINE|Alu	16453	NR_038296	100507194	Hs.678053	NR_038295	ENSG00000230269	LOC100507194	-	uncharacterized LOC100507194	miscRNA
chr6.8388545.+	chr6	8388545	8388546	+	0	NA	Intergenic	LTR9|LTR|ERV1	47249	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr20.52362421.-	chr20	52362421	52362422	-	0	NA	Intergenic	AluSx|SINE|Alu	-129827	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr10.8534179.+	chr10	8534179	8534180	+	0	NA	Intergenic	AluY|SINE|Alu	437512	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr10.102065059.+	chr10	102065059	102065060	+	0	NA	"intron (NM_016112, intron 2 of 15)"	AluSx1|SINE|Alu	-18590	NM_173809	282991	Hs.34906	NM_001001342		BLOC1S2	BLOS2|RP11-316M21.4	"biogenesis of lysosomal organelles complex-1, subunit 2"	protein-coding
chr13.112666140.+	chr13	112666140	112666141	+	0	NA	Intergenic	AluSg7|SINE|Alu	-55773	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr1.182025842.+	chr1	182025842	182025843	+	0	NA	"exon (NM_001009992, exon 2 of 2)"	"exon (NM_001009992, exon 2 of 2)"	5005	NM_001009992	127665	Hs.684328	NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
chr22.17679694.+	chr22	17679694	17679695	+	0	NA	"intron (NM_017424, intron 3 of 8)"	"intron (NM_017424, intron 3 of 8)"	851	NM_177405	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr7.100044627.+	chr7	100044627	100044628	+	0	NA	Intergenic	AluY|SINE|Alu	-10533	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr12.129892203.+	chr12	129892203	129892204	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496009	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr8.27695161.+	chr8	27695161	27695162	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	188	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr1.156646686.-	chr1	156646686	156646687	-	0	NA	"exon (NM_006617, exon 1 of 4)"	"exon (NM_006617, exon 1 of 4)"	-503	NM_006617	10763	Hs.527971	NM_006617	ENSG00000132688	NES	-	nestin	protein-coding
chr10.114601581.+	chr10	114601581	114601582	+	0	NA	Intergenic	Intergenic	-108428	NM_001198528	6934	Hs.593995	NM_001146274	ENSG00000148737	TCF7L2	TCF-4|TCF4	"transcription factor 7-like 2 (T-cell specific, HMG-box)"	protein-coding
chr5.156963254.+	chr5	156963254	156963255	+	0	NA	"intron (NM_033274, intron 4 of 22)"	AluSx|SINE|Alu	39529	NM_033274	8728	Hs.483944	NM_033274	ENSG00000135074	ADAM19	MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
chr19.40938945.+	chr19	40938945	40938946	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7013	NM_013376	29950	Hs.269898	NM_013376		SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding
chr9.116102463.+	chr9	116102463	116102464	+	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	157	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr7.5244724.+	chr7	5244724	5244725	+	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	-9176	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr7.63023275.+	chr7	63023275	63023276	+	0	NA	Intergenic	Intergenic	-58193	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr16.1845376.-	chr16	1845376	1845377	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	467	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.32427416.-	chr7	32427416	32427417	-	0	NA	Intergenic	SVA_E|Other|Other	-70690	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
chr21.31598709.+	chr21	31598709	31598710	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10240	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr1.153961709.-	chr1	153961709	153961710	-	0	NA	Intergenic	Intergenic	1530	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr1.97799203.-	chr1	97799203	97799204	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237724	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr16.22021236.+	chr16	22021236	22021237	+	0	NA	"intron (NM_001164579, intron 1 of 2)"	AluSx3|SINE|Alu	1780	NM_001164579	730094	Hs.498890	NM_173501	ENSG00000185716	C16orf52	-	chromosome 16 open reading frame 52	protein-coding
chr16.31449011.+	chr16	31449011	31449012	+	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	5337	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr14.101189587.-	chr14	101189587	101189588	-	0	NA	Intergenic	Intergenic	3615	NM_003836	8788	Hs.533717	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta-like 1 homolog (Drosophila)	protein-coding
chr20.61021400.+	chr20	61021400	61021401	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-18771	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr19.16568496.-	chr19	16568496	16568497	-	0	NA	"intron (NM_001258375, intron 1 of 21)"	"intron (NM_001258375, intron 1 of 21)"	-14327	NM_001258374	58513	Hs.742093	NM_001258374	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
chr11.5315839.-	chr11	5315839	5315840	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7337	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr17.40536632.-	chr17	40536632	40536633	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3773	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr20.4729580.-	chr20	4729580	4729581	-	0	NA	Intergenic	Intergenic	8266	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr2.109985634.-	chr2	109985634	109985635	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55553	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr5.116980729.+	chr5	116980729	116980730	+	0	NA	Intergenic	AluY|SINE|Alu	229521	NR_046089	728342	Hs.434420	NR_046089		LOC728342	-	uncharacterized LOC728342	miscRNA
chr3.47744621.+	chr3	47744621	47744622	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78784	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr8.70843530.-	chr8	70843530	70843531	-	0	NA	Intergenic	AluY|SINE|Alu	96231	NM_030958	81796	Hs.443609	NM_001146008	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15	"solute carrier organic anion transporter family, member 5A1"	protein-coding
chrX.42145010.+	chrX	42145010	42145011	+	0	NA	Intergenic	SVA_D|Other|Other	-362723	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chrX.53111634.-	chrX	53111634	53111635	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-92	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr6.33500247.+	chr6	33500247	33500248	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47823	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr11.92637306.+	chr11	92637306	92637307	+	0	NA	Intergenic	AluY|SINE|Alu	-65483	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr20.62479301.-	chr20	62479301	62479302	-	0	NA	Intergenic	Intergenic	13265	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr13.48803988.-	chr13	48803988	48803989	-	0	NA	Intergenic	AluSx|SINE|Alu	3286	NM_021999	9445	Hs.643683	NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|imBRI2	integral membrane protein 2B	protein-coding
chr1.90538281.+	chr1	90538281	90538282	+	0	NA	Intergenic	AluY|SINE|Alu	77603	NM_182976	284695	Hs.306221	NM_181781	ENSG00000162664	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
chr15.91370888.+	chr15	91370888	91370889	+	0	NA	Intergenic	AluSz|SINE|Alu	-40997	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr13.77954549.-	chr13	77954549	77954550	-	0	NA	Intergenic	AluSc|SINE|Alu	53372	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr4.162440570.+	chr4	162440570	162440571	+	0	NA	"intron (NM_001128427, intron 10 of 15)"	AluY|SINE|Alu	644616	NM_020116	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr14.101693724.+	chr14	101693724	101693725	+	0	NA	Intergenic	Intergenic	157476	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr17.8061094.+	chr17	8061094	8061095	+	0	NA	Intergenic	AluSx|SINE|Alu	5199	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr22.44600844.+	chr22	44600844	44600845	+	0	NA	"intron (NM_022141, intron 12 of 13)"	"intron (NM_022141, intron 12 of 13)"	23587	NM_001137606	64098	Hs.666944	NM_001137606	ENSG00000138964	PARVG	-	"parvin, gamma"	protein-coding
chr1.153629417.+	chr1	153629417	153629418	+	0	NA	Intergenic	AluY|SINE|Alu	-1713	NM_012437	23557	Hs.32018	NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|SNAPAP	SNAP-associated protein	protein-coding
chr10.2037068.+	chr10	2037068	2037069	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	19474	NR_040253	282980	Hs.576810	NR_040253	ENSG00000234962	LINC00700	-	long intergenic non-protein coding RNA 700	miscRNA
chrM.15373.-	chrM	15373	15374	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.4697380.-	chr17	4697380	4697381	-	0	NA	Intergenic	AluY|SINE|Alu	2059	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr16.1228100.+	chr16	1228100	1228101	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24859	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr4.1400233.+	chr4	1400233	1400234	+	0	NA	Intergenic	CpG	14893	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr17.45349563.+	chr17	45349563	45349564	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18355	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr18.23534227.+	chr18	23534227	23534228	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	136384	NM_001007559	6760	Hs.129261	NM_001007559	ENSG00000141380	SS18	SSXT|SYT	"synovial sarcoma translocation, chromosome 18"	protein-coding
chr22.45845266.-	chr22	45845266	45845267	-	0	NA	Intergenic	AluSz6|SINE|Alu	-35694	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11	RIB43A domain with coiled-coils 2	protein-coding
chr16.31103094.-	chr16	31103094	31103095	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	2964	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr16.11746962.-	chr16	11746962	11746963	-	0	NA	Intergenic	AluSx1|SINE|Alu	15327	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr14.105333238.+	chr14	105333238	105333239	+	0	NA	"intron (NM_015005, intron 1 of 17)"	L2b|LINE|L2	1588	NM_015005	283638	Hs.533721	NM_001112726	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
chr4.3540652.-	chr4	3540652	3540653	-	0	NA	Intergenic	SVA_D|Other|Other	6428	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr17.45331316.+	chr17	45331316	45331317	+	0	NA	"intron (NM_000212, intron 1 of 14)"	CpG	108	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr22.31420928.-	chr22	31420928	31420929	-	0	NA	Intergenic	AluSx|SINE|Alu	-55294	NR_002323	55000	Hs.554829	NR_002323		TUG1	LINC00080|NCRNA00080|TI-227H	taurine upregulated 1 (non-protein coding)	miscRNA
chr10.133203514.+	chr10	133203514	133203515	+	0	NA	Intergenic	Intergenic	-93530	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr15.76627352.-	chr15	76627352	76627353	-	0	NA	Intergenic	AluSg|SINE|Alu	1795	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr12.129892202.+	chr12	129892202	129892203	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496010	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr6.170055324.-	chr6	170055324	170055325	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46835	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr9.133788061.+	chr9	133788061	133788062	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18836	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr2.202046063.-	chr2	202046063	202046064	-	0	NA	Intergenic	AluSz|SINE|Alu	1558	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr1.17240905.-	chr1	17240905	17240906	-	0	NA	Intergenic	CpG	7540	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT	"ciliary rootlet coiled-coil, rootletin"	protein-coding
chr5.1067302.-	chr5	1067302	1067303	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4213	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr5.31921524.+	chr5	31921524	31921525	+	0	NA	"intron (NM_178140, intron 1 of 23)"	AluJb|SINE|Alu	14741	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	miscRNA
chr4.68566911.+	chr4	68566911	68566912	+	0	NA	promoter-TSS (NR_015439)	promoter-TSS (NR_015439)	-22	NM_018227	55236	Hs.212774	NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin-like modifier activating enzyme 6	protein-coding
chr10.11950378.-	chr10	11950378	11950379	-	0	NA	Intergenic	Intergenic	13669	NR_038222	219731	Hs.576787	NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	miscRNA
chr8.86574409.+	chr8	86574409	86574410	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	333	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr2.32250705.-	chr2	32250705	32250706	-	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	-14139	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr13.100934707.+	chr13	100934707	100934708	+	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	193438	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr6.24720942.-	chr6	24720942	24720943	-	0	NA	Intergenic	CpG	1539	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr12.79439077.+	chr12	79439077	79439078	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-356	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chrX.122993649.-	chrX	122993649	122993650	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	13	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr1.224419915.-	chr1	224419915	224419916	-	0	NA	"intron (NM_001243146, intron 19 of 20)"	AluY|SINE|Alu	-24928	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2	microRNA 320b-2	miscRNA
chr17.58227544.-	chr17	58227544	58227545	-	0	NA	"intron (NM_000717, intron 1 of 7)"	CpG	-242	NM_000717	762	Hs.89485	NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase IV	protein-coding
chr8.104851167.-	chr8	104851167	104851168	-	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	-19751	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr9.1433510.+	chr9	1433510	1433511	+	0	NA	Intergenic	AluSc|SINE|Alu	382890	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr19.4065768.-	chr19	4065768	4065769	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1048	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr13.96681131.+	chr13	96681131	96681132	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24605	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr22.38336414.+	chr22	38336414	38336415	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13240	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr8.43403639.-	chr8	43403639	43403640	-	0	NA	Intergenic	GSATX|Satellite|centr	-256054	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr20.388047.+	chr20	388047	388048	+	0	NA	promoter-TSS (NM_031229)	promoter-TSS (NM_031229)	-662	NM_006462	10616	Hs.247280	NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding
chr16.1075542.+	chr16	1075542	1075543	+	0	NA	Intergenic	Intergenic	43734	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
chr3.48117728.+	chr3	48117728	48117729	+	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	13041	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr10.120924977.+	chr10	120924977	120924978	+	0	NA	"intron (NM_213649, intron 1 of 13)"	CpG	227	NM_213649	119559	Hs.655168	NM_178867	ENSG00000183605	SFXN4	BCRM1	sideroflexin 4	protein-coding
chr5.172640592.-	chr5	172640592	172640593	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-21723	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr12.121904420.-	chr12	121904420	121904421	-	0	NA	"intron (NM_032590, intron 12 of 22)"	GC_rich|Low_complexity|Low_complexity	-66499	NM_194271	80196	Hs.292804	NM_001256858	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	"ring finger protein 34, E3 ubiquitin protein ligase"	protein-coding
chr1.217697531.+	chr1	217697531	217697532	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106878	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr6.162998502.-	chr6	162998502	162998503	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149662	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chrX.152916293.-	chrX	152916293	152916294	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8396	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr2.208031286.-	chr2	208031286	208031287	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-294	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr19.1045823.+	chr19	1045823	1045824	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5721	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr2.106682194.-	chr2	106682194	106682195	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-81	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr17.67192578.+	chr17	67192578	67192579	+	0	NA	"intron (NM_080282, intron 12 of 39)"	SVA_B|Other|Other	48378	NM_080282	10349	Hs.25377	NM_080282	ENSG00000154263	ABCA10	EST698739	"ATP-binding cassette, sub-family A (ABC1), member 10"	protein-coding
chr10.133869110.-	chr10	133869110	133869111	-	0	NA	Intergenic	Intergenic	49203	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr22.42310508.-	chr22	42310508	42310509	-	0	NA	"exon (NM_001207020, exon 1 of 4)"	"exon (NM_001207020, exon 1 of 4)"	-163	NM_001207020	440829	Hs.526704	NM_001207020		SHISA8	C22orf17|Orf26	shisa homolog 8 (Xenopus laevis)	protein-coding
chr5.2860467.-	chr5	2860467	2860468	-	0	NA	Intergenic	Intergenic	-108205	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr9.7934816.-	chr9	7934816	7934817	-	0	NA	Intergenic	AluY|SINE|Alu	135017	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr14.99740953.-	chr14	99740953	99740954	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	3131	NM_138576	64919	Hs.709690	NM_022898	ENSG00000127152	BCL11B	ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
chr22.22259539.-	chr22	22259539	22259540	-	0	NA	Intergenic	AluSc5|SINE|Alu	37569	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr12.123817434.-	chr12	123817434	123817435	-	0	NA	"intron (NM_018183, intron 6 of 30)"	AluY|SINE|Alu	-17554	NM_018183	55206	Hs.7012	NM_001167856	ENSG00000139697	SBNO1	MOP3|Sno	strawberry notch homolog 1 (Drosophila)	protein-coding
chr12.32064858.+	chr12	32064858	32064859	+	0	NA	Intergenic	AluY|SINE|Alu	-47495	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr10.118881400.-	chr10	118881400	118881401	-	0	NA	"intron (NM_001258300, intron 1 of 17)"	AluY|SINE|Alu	-4697	NM_001258300	57698	Hs.501140	NM_001127211	ENSG00000187164	KIAA1598	-	KIAA1598	protein-coding
chr20.61447700.+	chr20	61447700	61447701	+	0	NA	promoter-TSS (NM_001853)	promoter-TSS (NM_001853)	-714	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chrX.13062323.-	chrX	13062323	13062324	-	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	-594	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr2.47660357.-	chr2	47660357	47660358	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-30151	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr8.19626788.-	chr8	19626788	19626789	-	0	NA	Intergenic	AluSx1|SINE|Alu	48130	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chr9.12352803.-	chr9	12352803	12352804	-	0	NA	Intergenic	AluY|SINE|Alu	340583	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr13.83333882.-	chr13	83333882	83333883	-	0	NA	Intergenic	AluYb8|SINE|Alu	-1122646	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr7.56109509.+	chr7	56109509	56109510	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9759	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr17.18179003.+	chr17	18179003	18179004	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14579	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr12.113494394.-	chr12	113494394	113494395	-	0	NA	Intergenic	CpG	1268	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr7.12595734.+	chr7	12595734	12595735	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14469	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr20.62103320.+	chr20	62103320	62103321	+	0	NA	"intron (NM_172108, intron 1 of 15)"	CpG	673	NM_004518	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr15.72816603.-	chr15	72816603	72816604	-	0	NA	"intron (NM_005744, intron 2 of 13)"	AluSz|SINE|Alu	-49936	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	"ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)"	protein-coding
chr7.23092532.+	chr7	23092532	23092533	+	0	NA	Intergenic	AluSc|SINE|Alu	-38762	NM_032581	84668	Hs.85603	NM_032581	ENSG00000122591	FAM126A	DRCTNNB1A|HCC|HLD5|HYCC1	"family with sequence similarity 126, member A"	protein-coding
chr18.10581574.+	chr18	10581574	10581575	+	0	NA	Intergenic	AluSq2|SINE|Alu	55701	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr2.48622460.-	chr2	48622460	48622461	-	0	NA	Intergenic	AluSp|SINE|Alu	45448	NM_001135629	129285	Hs.654619	NM_001135630	ENSG00000162869	PPP1R21	CCDC128|KLRAQ1	"protein phosphatase 1, regulatory subunit 21"	protein-coding
chr12.53369534.+	chr12	53369534	53369535	+	0	NA	Intergenic	Intergenic	-25884	NM_001256293	3856	Hs.708445	NM_001256282	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
chr9.140918006.+	chr9	140918006	140918007	+	0	NA	"exon (NM_001243812, exon 19 of 46)"	"exon (NM_001243812, exon 19 of 46)"	-126559	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr3.34527464.-	chr3	34527464	34527465	-	0	NA	Intergenic	AluSz6|SINE|Alu	-687401	NM_001162429	10015	Hs.475896	NM_001162429	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
chr19.23432269.+	chr19	23432269	23432270	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	903	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chrX.47336587.-	chrX	47336587	47336588	-	0	NA	"intron (NM_153380, intron 1 of 4)"	AluSx1|SINE|Alu	-5758	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr19.33776893.-	chr19	33776893	33776894	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16537	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr9.83940577.-	chr9	83940577	83940578	-	0	NA	Intergenic	AluY|SINE|Alu	-363019	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr11.19881565.-	chr11	19881565	19881566	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99936	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chrX.152916362.-	chrX	152916362	152916363	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8465	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr10.76198255.+	chr10	76198255	76198256	+	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	262008	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr17.40536625.-	chr17	40536625	40536626	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3780	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr2.129686615.-	chr2	129686615	129686616	-	0	NA	Intergenic	AluY|SINE|Alu	610444	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr14.44126149.-	chr14	44126149	44126150	-	0	NA	Intergenic	AluSc|SINE|Alu	-850350	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr2.48776688.+	chr2	48776688	48776689	+	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	19380	NM_006873	11037	Hs.736128	NM_001198595	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
chr17.79427787.-	chr17	79427787	79427788	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9573	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr1.6094750.+	chr1	6094750	6094751	+	0	NA	"5' UTR (NM_001199860, exon 1 of 16)"	"5' UTR (NM_001199860, exon 1 of 16)"	402	NM_001199860	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr16.4823706.-	chr16	4823706	4823707	-	0	NA	Intergenic	AluSq2|SINE|Alu	6540	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr12.118663877.+	chr12	118663877	118663878	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	90007	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr12.6167266.-	chr12	6167266	6167267	-	0	NA	"intron (NM_000552, intron 13 of 51)"	"intron (NM_000552, intron 13 of 51)"	-66570	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
chr6.34857460.-	chr6	34857460	34857461	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-422	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr2.239149252.+	chr2	239149252	239149253	+	0	NA	promoter-TSS (NM_001142853)	promoter-TSS (NM_001142853)	-571	NM_018645	55502	Hs.42949	NM_001142853	ENSG00000144485	HES6	HES-6|bHLHb41|bHLHc23	hairy and enhancer of split 6 (Drosophila)	protein-coding
chr17.27717847.+	chr17	27717847	27717848	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-96	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr17.48631033.-	chr17	48631033	48631034	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6583	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr2.90481146.+	chr2	90481146	90481147	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1366829	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr6.149638265.+	chr6	149638265	149638266	+	0	NA	Intergenic	CpG	-1171	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr20.62479324.+	chr20	62479324	62479325	+	0	NA	Intergenic	Intergenic	-13242	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr9.116102458.+	chr9	116102458	116102459	+	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	162	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr8.104645110.+	chr8	104645110	104645111	+	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	132134	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr11.64853998.-	chr11	64853998	64853999	-	0	NA	"exon (NM_006782, exon 4 of 8)"	"exon (NM_006782, exon 4 of 8)"	-2304	NM_006782	7542	Hs.712317	NM_006782	ENSG00000162300	ZFPL1	D11S750|MCG4	zinc finger protein-like 1	protein-coding
chr12.34492656.-	chr12	34492656	34492657	-	0	NA	Intergenic	GSATII|Satellite|centr	-317440	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr21.11149436.-	chr21	11149436	11149437	-	0	NA	Intergenic	AluY|SINE|Alu	50499	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr4.123063380.-	chr4	123063380	123063381	-	0	NA	Intergenic	AluSg7|SINE|Alu	28378	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr22.38166033.-	chr22	38166033	38166034	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSz|SINE|Alu	-23792	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr11.118862310.-	chr11	118862310	118862311	-	0	NA	Intergenic	SVA_B|Other|Other	6542	NM_198489	338657	Hs.534613	NM_198489	ENSG00000186166	CCDC84	-	coiled-coil domain containing 84	protein-coding
chr6.126111896.-	chr6	126111896	126111897	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	13	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr11.113931426.-	chr11	113931426	113931427	-	0	NA	"intron (NM_001018011, intron 1 of 6)"	CpG	-138	NM_001018011	7704	Hs.682144	NM_001018011	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
chr4.148516432.-	chr4	148516432	148516433	-	0	NA	Intergenic	AluY|SINE|Alu	22107	NM_018241	55751	Hs.203896	NM_018241		TMEM184C	TMEM34	transmembrane protein 184C	protein-coding
chr21.45243626.-	chr21	45243626	45243627	-	0	NA	Intergenic	Intergenic	11178	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr16.31449003.-	chr16	31449003	31449004	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5345	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr2.70416496.-	chr2	70416496	70416497	-	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	-1655	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr16.85498203.-	chr16	85498203	85498204	-	0	NA	Intergenic	MIRb|SINE|MIR	146826	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr4.48017004.-	chr4	48017004	48017005	-	0	NA	Intergenic	AluY|SINE|Alu	1787	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr12.112620060.-	chr12	112620060	112620061	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56711	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr6.27633479.-	chr6	27633479	27633480	-	0	NA	Intergenic	AluSx1|SINE|Alu	28335	NR_038293	100507173	Hs.733567	NR_038292		LOC100507173	-	uncharacterized LOC100507173	miscRNA
chr2.20424091.-	chr2	20424091	20424092	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-836	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chrX.54763080.-	chrX	54763080	54763081	-	0	NA	Intergenic	SVA_B|Other|Other	-61593	NM_198510	347365	Hs.454272	NM_198510	ENSG00000102313	ITIH6	ITIH5L|UNQ6369|dJ14O9.1	"inter-alpha-trypsin inhibitor heavy chain family, member 6"	protein-coding
chr1.6132098.+	chr1	6132098	6132099	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25924	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr5.3764233.+	chr5	3764233	3764234	+	0	NA	Intergenic	Intergenic	168065	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr19.10041274.-	chr19	10041274	10041275	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5796	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr4.185174143.-	chr4	185174143	185174144	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35029	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr3.45348421.+	chr3	45348421	45348422	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80607	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr7.193544.-	chr7	193544	193545	-	0	NA	"exon (NM_020223, exon 1 of 10)"	"exon (NM_020223, exon 1 of 10)"	-575	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	"family with sequence similarity 20, member C"	protein-coding
chr14.90254581.+	chr14	90254581	90254582	+	0	NA	Intergenic	AluSx|SINE|Alu	166508	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr10.118500959.+	chr10	118500959	118500960	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1126	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr1.149646739.-	chr1	149646739	149646740	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70286	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr3.95669676.+	chr3	95669676	95669677	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267639	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr12.8830949.-	chr12	8830949	8830950	-	0	NA	Intergenic	AluSp|SINE|Alu	15516	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr5.10788318.+	chr5	10788318	10788319	+	0	NA	Intergenic	AluSx|SINE|Alu	-26931	NM_004394	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death-associated protein	protein-coding
chr20.61867557.+	chr20	61867557	61867558	+	0	NA	"exon (NM_139317, exon 1 of 7)"	"exon (NM_139317, exon 1 of 7)"	281	NM_139317	79444	Hs.256126	NM_022161	ENSG00000101197	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
chr4.186887707.-	chr4	186887707	186887708	-	0	NA	Intergenic	AluSx1|SINE|Alu	9837	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr1.54966480.+	chr1	54966480	54966481	+	0	NA	Intergenic	AluSq|SINE|Alu	-47327	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr22.50876262.+	chr22	50876262	50876263	+	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	37202	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr5.22744264.-	chr5	22744264	22744265	-	0	NA	"intron (NM_004061, intron 1 of 14)"	AluY|SINE|Alu	-109467	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	"cadherin 12, type 2 (N-cadherin 2)"	protein-coding
chr1.179009708.-	chr1	179009708	179009709	-	0	NA	"intron (NM_014864, intron 1 of 7)"	SVA_D|Other|Other	-14634	NM_014864	9917	Hs.711441	NM_014864	ENSG00000116199	FAM20B	gxk1	"family with sequence similarity 20, member B"	protein-coding
chr19.58658199.+	chr19	58658199	58658200	+	0	NA	"intron (NM_024620, intron 1 of 3)"	SVA_D|Other|Other	3949	NM_024620	79673	Hs.458377	NM_024620	ENSG00000181894	ZNF329	-	zinc finger protein 329	protein-coding
chr3.124468920.+	chr3	124468920	124468921	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19707	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr17.60781344.-	chr17	60781344	60781345	-	0	NA	"intron (NM_001100875, intron 10 of 10)"	CpG	17514	NR_036146	100422923		NR_036146		MIR548W	-	microRNA 548w	miscRNA
chr18.68699009.+	chr18	68699009	68699010	+	0	NA	Intergenic	LTR12C|LTR|ERV1	547183	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr5.141558688.-	chr5	141558688	141558689	-	0	NA	Intergenic	AluSg|SINE|Alu	-70364	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr3.38106450.+	chr3	38106450	38106451	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25754	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr8.142657067.-	chr8	142657067	142657068	-	0	NA	Intergenic	Intergenic	139737	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr4.84864623.+	chr4	84864623	84864624	+	0	NA	Intergenic	SVA_D|Other|Other	407153	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr12.129892278.+	chr12	129892278	129892279	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	495934	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr11.66997264.-	chr11	66997264	66997265	-	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	10242	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr18.67270867.-	chr18	67270867	67270868	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202583	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chrX.88129130.-	chrX	88129130	88129131	-	0	NA	Intergenic	AluY|SINE|Alu	-126904	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr3.172180239.-	chr3	172180239	172180240	-	0	NA	Intergenic	AluY|SINE|Alu	13993	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr16.89117844.+	chr16	89117844	89117845	+	0	NA	Intergenic	Intergenic	-42373	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr5.140365512.+	chr5	140365512	140365513	+	0	NA	"intron (NM_031849, intron 3 of 3)"	AluY|SINE|Alu	19160	NM_031883	56134	Hs.199343	NM_018899	ENSG00000243232	PCDHAC2	PCDH-ALPHA-C2	"protocadherin alpha subfamily C, 2"	protein-coding
chr11.280387.-	chr11	280387	280388	-	0	NA	"exon (NM_001276700, exon 4 of 8)"	"exon (NM_001276700, exon 4 of 8)"	-1817	NM_138329	171389	Hs.352611	NM_001276700	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	"NLR family, pyrin domain containing 6"	protein-coding
chr4.134726985.+	chr4	134726985	134726986	+	0	NA	Intergenic	AluY|SINE|Alu	395918	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	"poly(A) binding protein, cytoplasmic 4-like"	protein-coding
chr12.33592876.-	chr12	33592876	33592877	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	122	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr2.69337787.-	chr2	69337787	69337788	-	0	NA	"intron (NM_018153, intron 10 of 12)"	AluY|SINE|Alu	-6973	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	miscRNA
chr15.97168662.-	chr15	97168662	97168663	-	0	NA	Intergenic	Intergenic	158017	NM_173499	145946	Hs.326528	NM_173499	ENSG00000185594	SPATA8	SRG8	spermatogenesis associated 8	protein-coding
chr20.17960333.-	chr20	17960333	17960334	-	0	NA	"intron (NM_052865, intron 3 of 4)"	AluY|SINE|Alu	-10571	NM_052865	92667	Hs.320823	NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
chr1.113275291.-	chr1	113275291	113275292	-	0	NA	Intergenic	AluY|SINE|Alu	-12102	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr5.78513879.+	chr5	78513879	78513880	+	0	NA	Intergenic	AluSx|SINE|Alu	-18046	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHDC1L3	"junction mediating and regulatory protein, p53 cofactor"	protein-coding
chr7.95178765.+	chr7	95178765	95178766	+	0	NA	Intergenic	AluY|SINE|Alu	47160	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr5.43200696.-	chr5	43200696	43200697	-	0	NA	"intron (NR_072980, intron 1 of 3)"	AluY|SINE|Alu	-7742	NR_072980	167359	Hs.25845	NM_153361	ENSG00000177453	NIM1	-	serine/threonine-protein kinase NIM1	protein-coding
chr12.38493563.+	chr12	38493563	38493564	+	0	NA	Intergenic	Intergenic	-216994	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr5.86907784.+	chr5	86907784	86907785	+	0	NA	Intergenic	AluY|SINE|Alu	-198934	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr19.14156310.-	chr19	14156310	14156311	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13661	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr1.24090520.+	chr1	24090520	24090521	+	0	NA	"intron (NR_038280, intron 3 of 3)"	AluSz|SINE|Alu	14267	NR_038280	100506963	Hs.592549	NR_038280	ENSG00000236810	LOC100506963	-	uncharacterized LOC100506963	miscRNA
chr7.83302715.+	chr7	83302715	83302716	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-24236	NM_012431	9723	Hs.528721	NM_001178129	ENSG00000170381	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E"	protein-coding
chr8.107670092.-	chr8	107670092	107670093	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-56	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr6.43016772.-	chr6	43016772	43016773	-	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	-4911	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr17.4422253.-	chr17	4422253	4422254	-	0	NA	"intron (NM_001124758, intron 2 of 12)"	"intron (NM_001124758, intron 2 of 12)"	-20124	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
chr1.227982956.+	chr1	227982956	227982957	+	0	NA	Intergenic	Intergenic	-20462	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr18.60740409.+	chr18	60740409	60740410	+	0	NA	Intergenic	AluYb8|SINE|Alu	246204	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr8.143373421.-	chr8	143373421	143373422	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93704	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr12.118812063.+	chr12	118812063	118812064	+	0	NA	Intergenic	AluSx|SINE|Alu	-1313	NM_016281	51347	Hs.644420	NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
chr2.133015081.+	chr2	133015081	133015082	+	0	NA	promoter-TSS (NR_031608)	promoter-TSS (NR_031608)	-428	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr16.4854045.+	chr16	4854045	4854046	+	0	NA	"3' UTR (NM_032569, exon 16 of 16)"	"3' UTR (NM_032569, exon 16 of 16)"	-1094	NM_024589	79641	Hs.459795	NM_024589	ENSG00000067836	ROGDI	KTZS	rogdi homolog (Drosophila)	protein-coding
chr17.20588556.-	chr17	20588556	20588557	-	0	NA	Intergenic	SVA_D|Other|Other	27203	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr11.134624871.-	chr11	134624871	134624872	-	0	NA	Intergenic	Intergenic	-318495	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr2.10165499.+	chr2	10165499	10165500	+	0	NA	Intergenic	AluJo|SINE|Alu	-18183	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr3.122695623.-	chr3	122695623	122695624	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	642	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr4.6946516.+	chr4	6946516	6946517	+	0	NA	"intron (NM_020773, intron 2 of 13)"	"intron (NM_020773, intron 2 of 13)"	35021	NM_020773	57533	Hs.518611	NM_001113361	ENSG00000132405	TBC1D14	-	"TBC1 domain family, member 14"	protein-coding
chr11.62551862.+	chr11	62551862	62551863	+	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	-3012	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr8.7414138.+	chr8	7414138	7414139	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2488	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr2.31691883.+	chr2	31691883	31691884	+	0	NA	Intergenic	AluY|SINE|Alu	-54272	NM_000379	7498	Hs.250	NM_000379	ENSG00000158125	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
chr4.96470828.+	chr4	96470828	96470829	+	0	NA	promoter-TSS (NM_003728)	promoter-TSS (NM_003728)	-467	NM_003728	8633	Hs.388565	NM_003728	ENSG00000182168	UNC5C	UNC5H3	unc-5 homolog C (C. elegans)	protein-coding
chr16.70356423.-	chr16	70356423	70356424	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23361	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr2.101214317.-	chr2	101214317	101214318	-	0	NA	Intergenic	AluY|SINE|Alu	-34899	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr7.158790511.-	chr7	158790511	158790512	-	0	NA	Intergenic	Intergenic	10534	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chrX.39680336.+	chrX	39680336	39680337	+	0	NA	Intergenic	CpG	276383	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr15.82042557.+	chr15	82042557	82042558	+	0	NA	Intergenic	Intergenic	295927	NM_032246	84206	Hs.744275	NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 homolog B (C. elegans)	protein-coding
chr13.24932004.-	chr13	24932004	24932005	-	0	NA	Intergenic	Intergenic	-48288	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr17.79347583.+	chr17	79347583	79347584	+	0	NA	Intergenic	Intergenic	11577	NM_001272086	100130370	Hs.651390	XM_001714096		LOC100130370	-	uncharacterized LOC100130370	protein-coding
chr7.8473292.-	chr7	8473292	8473293	-	0	NA	promoter-TSS (NM_152745)	promoter-TSS (NM_152745)	293	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1	neurexophilin 1	protein-coding
chr21.47838704.-	chr21	47838704	47838705	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40158	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr9.34329747.+	chr9	34329747	34329748	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	243	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr20.45935933.+	chr20	45935933	45935934	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11313	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr10.35559807.+	chr10	35559807	35559808	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23854	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr8.143217991.-	chr8	143217991	143217992	-	0	NA	Intergenic	Intergenic	39709	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chrX.39680383.-	chrX	39680383	39680384	-	0	NA	Intergenic	CpG	-276336	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr13.56400599.-	chr13	56400599	56400600	-	0	NA	Intergenic	AluY|SINE|Alu	-652010	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr21.46737148.+	chr21	46737148	46737149	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	29181	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr20.33005293.+	chr20	33005293	33005294	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48837	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr1.217697826.+	chr1	217697826	217697827	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106583	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr10.121799624.+	chr10	121799624	121799625	+	0	NA	Intergenic	MER21B|LTR|ERVL	81599	NR_039830	100616322		NR_039830	ENSG00000265370	MIR4682	-	microRNA 4682	miscRNA
chr15.31566364.+	chr15	31566364	31566365	+	0	NA	Intergenic	AluY|SINE|Alu	-43314	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
chr8.98328042.+	chr8	98328042	98328043	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-37866	NM_033512	85453	Hs.173094	NM_033512	ENSG00000180543	TSPYL5	-	TSPY-like 5	protein-coding
chr2.85830129.-	chr2	85830129	85830130	-	0	NA	promoter-TSS (NM_001031738)	promoter-TSS (NM_001031738)	-164	NR_046347	10713	Hs.654745	NM_001256725	ENSG00000168883	USP39	65K|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
chr5.8479631.+	chr5	8479631	8479632	+	0	NA	Intergenic	AluY|SINE|Alu	18593	NR_039663	100616142		NR_039663	ENSG00000266471	MIR4458	-	microRNA 4458	miscRNA
chr3.158905800.-	chr3	158905800	158905801	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	"intron (NM_001197114, intron 1 of 9)"	85236	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr12.79439107.+	chr12	79439107	79439108	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-326	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr14.103988584.-	chr14	103988584	103988585	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-612	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr7.104040188.-	chr7	104040188	104040189	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71084	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr1.6132091.+	chr1	6132091	6132092	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25917	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chrM.6464.+	chrM	6464	6465	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.10952996.-	chr2	10952996	10952997	-	0	NA	promoter-TSS (NM_005742)	promoter-TSS (NM_005742)	36	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr1.163468377.+	chr1	163468377	163468378	+	0	NA	Intergenic	SVA_A|Other|Other	176654	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr12.8777853.-	chr12	8777853	8777854	-	0	NA	Intergenic	Intergenic	12411	NM_020661	57379	Hs.149342	NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HIGM2	activation-induced cytidine deaminase	protein-coding
chr19.3644532.+	chr19	3644532	3644533	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17719	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr14.104015145.-	chr14	104015145	104015146	-	0	NA	Intergenic	Intergenic	-13510	NM_001015049	9529	Hs.5443	NM_001015048	ENSG00000166170	BAG5	BAG-5	BCL2-associated athanogene 5	protein-coding
chr16.12210427.-	chr16	12210427	12210428	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139825	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr4.190662147.+	chr4	190662147	190662148	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199827	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chrX.39680360.-	chrX	39680360	39680361	-	0	NA	Intergenic	CpG	-276359	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr11.89400835.-	chr11	89400835	89400836	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8370	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr1.24513587.-	chr1	24513587	24513588	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-178	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr2.241622535.-	chr2	241622535	241622536	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	218	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr7.5396364.+	chr7	5396364	5396365	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66813	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr3.36494744.-	chr3	36494744	36494745	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72647	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr3.85080915.+	chr3	85080915	85080916	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72782	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr12.6167279.-	chr12	6167279	6167280	-	0	NA	"intron (NM_000552, intron 13 of 51)"	"intron (NM_000552, intron 13 of 51)"	-66557	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
chr10.42596977.+	chr10	42596977	42596978	+	0	NA	Intergenic	HSATII|Satellite|Satellite	266516	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr9.96915809.+	chr9	96915809	96915810	+	0	NA	Intergenic	AluSx3|SINE|Alu	-22430	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	miscRNA
chr21.43198292.+	chr21	43198292	43198293	+	0	NA	Intergenic	Intergenic	-11043	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr12.94945438.+	chr12	94945438	94945439	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10127	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr16.58300800.+	chr16	58300800	58300801	+	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	16960	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr4.37545362.+	chr4	37545362	37545363	+	0	NA	"intron (NM_001104629, intron 1 of 3)"	AluYc|SINE|Alu	-40493	NM_018302	55286	Hs.107527	NM_001104629		C4orf19	-	chromosome 4 open reading frame 19	protein-coding
chr16.70356415.-	chr16	70356415	70356416	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23353	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr6.163113543.-	chr6	163113543	163113544	-	0	NA	"intron (NM_004562, intron 1 of 11)"	MER77|LTR|ERVL	34621	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chrM.6559.+	chrM	6559	6560	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.101245771.+	chr2	101245771	101245772	+	0	NA	Intergenic	Intergenic	66353	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr7.72991456.+	chr7	72991456	72991457	+	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	1557	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr4.1626812.+	chr4	1626812	1626813	+	0	NA	Intergenic	CpG	58906	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr12.112620053.-	chr12	112620053	112620054	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56704	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr22.24621455.+	chr22	24621455	24621456	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19655	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr19.14096040.-	chr19	14096040	14096041	-	0	NA	"intron (NM_002918, intron 2 of 20)"	AluSz6|SINE|Alu	-21094	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chr11.47284114.-	chr11	47284114	47284115	-	0	NA	"intron (NM_001130102, intron 6 of 8)"	AluSz|SINE|Alu	-4646	NM_005693	10062	Hs.438863	NM_001130101	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	"nuclear receptor subfamily 1, group H, member 3"	protein-coding
chrY.13489489.-	chrY	13489489	13489490	-	0	NA	Intergenic	LSAU|Satellite|Satellite	-1043900	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chrX.53125746.+	chrX	53125746	53125747	+	0	NA	Intergenic	AluJb|SINE|Alu	14204	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.2860347.-	chr5	2860347	2860348	-	0	NA	Intergenic	Intergenic	-108085	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr20.48080617.+	chr20	48080617	48080618	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18564	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr1.149646804.+	chr1	149646804	149646805	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70351	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr17.11229407.-	chr17	11229407	11229408	-	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc8|SINE|Alu	-84667	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr7.821262.-	chr7	821262	821263	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33932	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr19.45454751.-	chr19	45454751	45454752	-	0	NA	Intergenic	Intergenic	3091	NR_040007	1209	Hs.444441	NM_001199468	ENSG00000104853	CLPTM1	-	cleft lip and palate associated transmembrane protein 1	protein-coding
chr21.46784542.+	chr21	46784542	46784543	+	0	NA	Intergenic	Intergenic	-40555	NM_130445	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr7.64493619.-	chr7	64493619	64493620	-	0	NA	Intergenic	SVA_C|Other|Other	5113	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr3.8721298.+	chr3	8721298	8721299	+	0	NA	Intergenic	Intergenic	-27534	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr7.100807807.+	chr7	100807807	100807808	+	0	NA	"exon (NM_003378, exon 2 of 2)"	"exon (NM_003378, exon 2 of 2)"	1045	NM_003378	7425	Hs.587325	NM_003378	ENSG00000128564	VGF	-	VGF nerve growth factor inducible	protein-coding
chr11.70403884.-	chr11	70403884	70403885	-	0	NA	"intron (NM_012309, intron 14 of 22)"	"intron (NM_012309, intron 14 of 22)"	73315	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	miscRNA
chr12.131402522.+	chr12	131402522	131402523	+	0	NA	Intergenic	L2b|LINE|L2	-35930	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr11.68855403.-	chr11	68855403	68855404	-	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	-39053	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr3.188708049.+	chr3	188708049	188708050	+	0	NA	Intergenic	Intergenic	-181714	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr7.64199174.-	chr7	64199174	64199175	-	0	NA	Intergenic	SVA_D|Other|Other	55592	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr1.89408390.-	chr1	89408390	89408391	-	0	NA	"intron (NM_001008662, intron 12 of 12)"	AluY|SINE|Alu	-50253	NM_019610	494115	Hs.481898	NM_001162536	ENSG00000213516	RBMXL1	RBM1	"RNA binding motif protein, X-linked-like 1"	protein-coding
chr17.79611142.+	chr17	79611142	79611143	+	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	1793	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr3.129048068.-	chr3	129048068	129048069	-	0	NA	Intergenic	AluY|SINE|Alu	12948	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr7.150812766.-	chr7	150812766	150812767	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28940	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr22.51001373.+	chr22	51001373	51001374	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-45	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr2.115328263.-	chr2	115328263	115328264	-	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	-109083	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr7.156795109.+	chr7	156795109	156795110	+	0	NA	Intergenic	Intergenic	7020	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr17.57884651.+	chr17	57884651	57884652	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33976	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr2.204615949.-	chr2	204615949	204615950	-	0	NA	Intergenic	AluY|SINE|Alu	-44751	NM_001243077	940	Hs.443123	NM_001243077		CD28	Tp44	CD28 molecule	protein-coding
chr7.152132971.-	chr7	152132971	152132972	-	0	NA	"5' UTR (NM_170606, exon 1 of 59)"	"5' UTR (NM_170606, exon 1 of 59)"	-119	NM_170606	58508	Hs.647120	NM_170606	ENSG00000055609	MLL3	HALR|KMT2C	myeloid/lymphoid or mixed-lineage leukemia 3	protein-coding
chr10.28821894.+	chr10	28821894	28821895	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	472	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr7.5396279.+	chr7	5396279	5396280	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66898	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr9.133430108.+	chr9	133430108	133430109	+	0	NA	Intergenic	Intergenic	24773	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr9.34628955.+	chr9	34628955	34628956	+	0	NA	promoter-TSS (NM_001017363)	promoter-TSS (NM_001017363)	-944	NM_001017363	138715	Hs.534549	NM_001017363	ENSG00000205143	ARID3C	-	AT rich interactive domain 3C (BRIGHT-like)	protein-coding
chr17.74707120.-	chr17	74707120	74707121	-	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	64	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr10.102504434.-	chr10	102504434	102504435	-	0	NA	Intergenic	CpG	1034	NM_003988	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	PAPRS	paired box 2	protein-coding
chr5.1137818.+	chr5	1137818	1137819	+	0	NA	Intergenic	Intergenic	-25646	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr7.73456629.+	chr7	73456629	73456630	+	0	NA	"intron (NM_001081753, intron 5 of 30)"	AluJb|SINE|Alu	14202	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chrX.26892076.-	chrX	26892076	26892077	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-315622	NR_001559	139538	Hs.447377	NR_001559	ENSG00000259849	VENTXP1	CT18|NA88A|VENTX2P1	VENT homeobox pseudogene 1	pseudo
chr10.42375494.-	chr10	42375494	42375495	-	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-487999	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr16.1228066.+	chr16	1228066	1228067	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24825	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr9.79521039.+	chr9	79521039	79521040	+	0	NA	promoter-TSS (NM_015225)	promoter-TSS (NM_015225)	-36	NM_015225	158471	Hs.262857	NM_138818	ENSG00000106772	PRUNE2	A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|RP11-58J3.2|bA214N16.3	prune homolog 2 (Drosophila)	protein-coding
chr2.10424814.-	chr2	10424814	10424815	-	0	NA	Intergenic	Intergenic	18216	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr7.5582593.-	chr7	5582593	5582594	-	0	NA	Intergenic	Intergenic	12361	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr14.103988559.-	chr14	103988559	103988560	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-637	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr8.128765038.+	chr8	128765038	128765039	+	0	NA	Intergenic	AluSx1|SINE|Alu	16723	NM_002467	4609	Hs.202453	NM_002467	ENSG00000136997	MYC	MRTL|bHLHe39|c-Myc	v-myc myelocytomatosis viral oncogene homolog (avian)	protein-coding
chr22.31732655.-	chr22	31732655	31732656	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9594	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr17.45349564.-	chr17	45349564	45349565	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18356	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr5.54179684.+	chr5	54179684	54179685	+	0	NA	Intergenic	CpG	101730	NM_007036	11082	Hs.129944	NM_001135604	ENSG00000164283	ESM1	endocan	endothelial cell-specific molecule 1	protein-coding
chr17.71108222.-	chr17	71108222	71108223	-	0	NA	Intergenic	AluY|SINE|Alu	19369	NM_001159770	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr6.12012496.+	chr6	12012496	12012497	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-228	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr15.64686567.-	chr15	64686567	64686568	-	0	NA	"intron (NM_016213, intron 2 of 12)"	AluY|SINE|Alu	-6564	NM_016213	9325	Hs.500340	NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391	thyroid hormone receptor interactor 4	protein-coding
chr7.61969315.-	chr7	61969315	61969316	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-795119	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr12.131551507.-	chr12	131551507	131551508	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98049	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr6.43251483.-	chr6	43251483	43251484	-	0	NA	"exon (NM_032538, exon 14 of 15)"	"exon (NM_032538, exon 14 of 15)"	14515	NM_006672	10864	Hs.485438	NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2	"solute carrier family 22 (organic anion transporter), member 7"	protein-coding
chr7.150812702.-	chr7	150812702	150812703	-	0	NA	"intron (NM_031946, intron 1 of 17)"	GC_rich|Low_complexity|Low_complexity	-28876	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr2.21484590.-	chr2	21484590	21484591	-	0	NA	Intergenic	Intergenic	217645	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chrX.18849755.+	chrX	18849755	18849756	+	0	NA	Intergenic	AluY|SINE|Alu	-58659	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr19.1252679.+	chr19	1252679	1252680	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4127	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr5.36143018.+	chr5	36143018	36143019	+	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	5072	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr9.16766053.-	chr9	16766053	16766054	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104733	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr19.15037592.-	chr19	15037592	15037593	-	0	NA	Intergenic	AluSp|SINE|Alu	14709	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr4.166248539.+	chr4	166248539	166248540	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-279	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.244448175.-	chr1	244448175	244448176	-	0	NA	Intergenic	Intergenic	67762	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
chr7.158670996.-	chr7	158670996	158670997	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21727	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr1.213233015.+	chr1	213233015	213233016	+	0	NA	"intron (NM_001136138, intron 1 of 13)"	AluSx|SINE|Alu	8427	NM_001136138	26750	Hs.591416	NM_001136138		RPS6KC1	RPK118|humS6PKh1	"ribosomal protein S6 kinase, 52kDa, polypeptide 1"	protein-coding
chr2.905804.-	chr2	905804	905805	-	0	NA	Intergenic	Intergenic	40750	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chrX.19862922.-	chrX	19862922	19862923	-	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	-42822	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr2.239047357.-	chr2	239047357	239047358	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	6	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr21.30365161.-	chr21	30365161	30365162	-	0	NA	"exon (NM_015565, exon 1 of 30)"	"exon (NM_015565, exon 1 of 30)"	-116	NM_015565	26046	Hs.288773	NM_015565	ENSG00000198862	LTN1	C21orf10|C21orf98|RNF160|ZNF294	listerin E3 ubiquitin protein ligase 1	protein-coding
chr17.18755421.-	chr17	18755421	18755422	-	0	NA	Intergenic	AluSp|SINE|Alu	4191	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr16.75551672.-	chr16	75551672	75551673	-	0	NA	Intergenic	AluSz|SINE|Alu	-17396	NM_024533	23563	Hs.710689	NM_024533	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5	protein-coding
chr19.34958562.+	chr19	34958562	34958563	+	0	NA	"intron (NM_005499, intron 16 of 16)"	AluSx3|SINE|Alu	-14318	NM_001080436	126374	Hs.585010	NM_001080436		WTIP	-	Wilms tumor 1 interacting protein	protein-coding
chr9.115479043.-	chr9	115479043	115479044	-	0	NA	"intron (NM_021218, intron 1 of 4)"	AluSc8|SINE|Alu	-1344	NM_021218	58493	Hs.658575	NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
chr7.127631.+	chr7	127631	127632	+	0	NA	Intergenic	Intergenic	-65338	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	"family with sequence similarity 20, member C"	protein-coding
chr2.29052548.+	chr2	29052548	29052549	+	0	NA	"intron (NM_001008779, intron 4 of 4)"	AluY|SINE|Alu	13685	NM_001008779	245711	Hs.511956	NM_001008779	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy homolog A (Xenopus laevis)	protein-coding
chr17.7561694.-	chr17	7561694	7561695	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7440	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr3.164852010.-	chr3	164852010	164852011	-	0	NA	Intergenic	AluY|SINE|Alu	55727	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr6.109611741.+	chr6	109611741	109611742	+	0	NA	Intergenic	CpG	-3765	NR_028595	221262	Hs.723571	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	"coiled-coil domain containing 162, pseudogene"	pseudo
chr22.30753791.+	chr22	30753791	30753792	+	0	NA	promoter-TSS (NM_001005409)	promoter-TSS (NM_001005409)	-878	NM_005877	10291	Hs.505597	NM_001005409	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	"splicing factor 3a, subunit 1, 120kDa"	protein-coding
chr3.71376680.-	chr3	71376680	71376681	-	0	NA	"intron (NM_001012505, intron 4 of 6)"	AluY|SINE|Alu	22769	NM_001244812	27086	Hs.59368	NM_001012505	ENSG00000114861	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
chr20.39978509.+	chr20	39978509	39978510	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8949	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr17.48631010.-	chr17	48631010	48631011	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6560	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr8.609247.-	chr8	609247	609248	-	0	NA	Intergenic	Intergenic	-71979	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr2.239147890.-	chr2	239147890	239147891	-	0	NA	"exon (NM_001142853, exon 4 of 4)"	"exon (NM_001142853, exon 4 of 4)"	-791	NM_001142853	55502	Hs.42949	NM_001142853	ENSG00000144485	HES6	HES-6|bHLHb41|bHLHc23	hairy and enhancer of split 6 (Drosophila)	protein-coding
chr14.39544060.+	chr14	39544060	39544061	+	0	NA	"intron (NM_006364, intron 8 of 19)"	AluY|SINE|Alu	28377	NM_006364	10484	Hs.272927	NM_006364	ENSG00000100934	SEC23A	CLSD	Sec23 homolog A (S. cerevisiae)	protein-coding
chr6.166934789.-	chr6	166934789	166934790	-	0	NA	"intron (NM_001006932, intron 4 of 21)"	"intron (NM_001006932, intron 4 of 21)"	11868	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	miscRNA
chr16.82931986.+	chr16	82931986	82931987	+	0	NA	"intron (NM_001220490, intron 2 of 12)"	AluSx|SINE|Alu	271587	NM_001220488	1012	Hs.661776	NM_001220488	ENSG00000140945	CDH13	CDHH|P105	"cadherin 13, H-cadherin (heart)"	protein-coding
chr16.31103105.+	chr16	31103105	31103106	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2975	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr7.5570065.+	chr7	5570065	5570066	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	167	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr5.522545.-	chr5	522545	522546	-	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	-2004	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr18.73357771.-	chr18	73357771	73357772	-	0	NA	Intergenic	L2|LINE|L2	218182	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr2.163018693.+	chr2	163018693	163018694	+	0	NA	Intergenic	AluSz|SINE|Alu	-9779	NM_002054	2641	Hs.741174	NM_002054	ENSG00000115263	GCG	GLP1|GLP2|GRPP	glucagon	protein-coding
chrX.53111577.+	chrX	53111577	53111578	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	35	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr17.59482746.-	chr17	59482746	59482747	-	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	-5489	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr17.78978012.-	chr17	78978012	78978013	-	0	NA	Intergenic	CpG	-12371	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr5.166357255.+	chr5	166357255	166357256	+	0	NA	Intergenic	AluSx|SINE|Alu	-354588	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr22.31732684.-	chr22	31732684	31732685	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9565	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr16.3755326.+	chr16	3755326	3755327	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12272	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr2.61701803.+	chr2	61701803	61701804	+	0	NA	Intergenic	AluSg|SINE|Alu	-3954	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr19.3148725.+	chr19	3148725	3148726	+	0	NA	"exon (NM_002068, exon 2 of 7)"	"exon (NM_002068, exon 2 of 7)"	12534	NM_002068	2769	Hs.73797	NM_002068	ENSG00000060558	GNA15	GNA16	"guanine nucleotide binding protein (G protein), alpha 15 (Gq class)"	protein-coding
chr15.76627313.-	chr15	76627313	76627314	-	0	NA	Intergenic	AluSg|SINE|Alu	1834	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr13.50701756.-	chr13	50701756	50701757	-	0	NA	Intergenic	CpG-6444	2079	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr2.240980320.+	chr2	240980320	240980321	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2079	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr2.113965326.+	chr2	113965326	113965327	+	0	NA	Intergenic	AluY|SINE|Alu	-27778	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr1.215227175.-	chr1	215227175	215227176	-	0	NA	"intron (NM_001017424, intron 1 of 6)"	AluSz6|SINE|Alu	29385	NM_001017425	3776	Hs.497745	NM_001017424	ENSG00000082482	KCNK2	K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e	"potassium channel, subfamily K, member 2"	protein-coding
chrM.16347.+	chrM	16347	16348	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.9053902.-	chr17	9053902	9053903	-	0	NA	"intron (NM_004822, intron 2 of 6)"	"intron (NM_004822, intron 2 of 6)"	-129043	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr11.68671221.+	chr11	68671221	68671222	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	82	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr1.59041992.+	chr1	59041992	59041993	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1174	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr19.15718074.+	chr19	15718074	15718075	+	0	NA	Intergenic	AluY|SINE|Alu	-7955	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr15.75074329.-	chr15	75074329	75074330	-	0	NA	promoter-TSS (NM_004383)	promoter-TSS (NM_004383)	96	NM_004383	1445	Hs.77793	NM_001127190	ENSG00000103653	CSK	-	c-src tyrosine kinase	protein-coding
chr4.186887677.-	chr4	186887677	186887678	-	0	NA	Intergenic	AluSx1|SINE|Alu	9807	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr3.36421988.-	chr3	36421988	36421989	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	109	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr1.100493699.-	chr1	100493699	100493700	-	0	NA	Intergenic	AluSx|SINE|Alu	10090	NM_033055	64645	Hs.124156	NM_033055	ENSG00000156875	HIAT1	-	hippocampus abundant transcript 1	protein-coding
chr1.154218149.-	chr1	154218149	154218150	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	AluY|SINE|Alu	-24824	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr12.118282880.-	chr12	118282880	118282881	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123148	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr15.50450607.+	chr15	50450607	50450608	+	0	NA	Intergenic	SVA_D|Other|Other	-23786	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	"solute carrier family 27 (fatty acid transporter), member 2"	protein-coding
chr18.77627539.-	chr18	77627539	77627540	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3871	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr9.1045369.+	chr9	1045369	1045370	+	0	NA	Intergenic	AluY|SINE|Alu	-4977	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr11.62418874.-	chr11	62418874	62418875	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-1900	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr1.201857790.+	chr1	201857790	201857791	+	0	NA	promoter-TSS (NR_030775)	promoter-TSS (NR_030775)	-7	NR_030775	149345	Hs.632471	NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa homolog 4 (Xenopus laevis)	protein-coding
chr14.45690369.+	chr14	45690369	45690370	+	0	NA	"intron (NM_018353, intron 11 of 16)"	AluY|SINE|Alu	32236	NM_018353	55320	Hs.732769	NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
chr1.59938103.+	chr1	59938103	59938104	+	0	NA	"intron (NM_018291, intron 6 of 15)"	LTR12C|LTR|ERV1	162353	NM_001244714	55277	Hs.444301	NM_001113411	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
chr2.191921697.+	chr2	191921697	191921698	+	0	NA	"intron (NM_001243835, intron 13 of 23)"	AluSx1|SINE|Alu	-42721	NM_139266	6772	Hs.743244	NM_007315	ENSG00000115415	STAT1	CANDF7|ISGF-3|STAT91	"signal transducer and activator of transcription 1, 91kDa"	protein-coding
chr2.85830127.+	chr2	85830127	85830128	+	0	NA	promoter-TSS (NM_001031738)	promoter-TSS (NM_001031738)	162	NR_046347	10713	Hs.654745	NM_001256725	ENSG00000168883	USP39	65K|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
chr15.76031187.-	chr15	76031187	76031188	-	0	NA	"intron (NR_024595, intron 2 of 4)"	CpG-8112	-1231	NR_024595	100128285	Hs.604066	NR_024595	ENSG00000246877	DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	DNM1 pseudogene 35	pseudo
chr1.79749364.-	chr1	79749364	79749365	-	0	NA	Intergenic	AluSx|SINE|Alu	276869	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr14.21255880.-	chr14	21255880	21255881	-	0	NA	Intergenic	AluY|SINE|Alu	-6670	NM_005615	6039	Hs.23262	NM_005615	ENSG00000169413	RNASE6	RNS6|RNasek6	"ribonuclease, RNase A family, k6"	protein-coding
chr3.49705504.-	chr3	49705504	49705505	-	0	NA	"3' UTR (NM_003458, exon 12 of 12)"	"3' UTR (NM_003458, exon 12 of 12)"	5931	NM_001640	327	Hs.517969	NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	N-acylaminoacyl-peptide hydrolase	protein-coding
chr16.4537742.+	chr16	4537742	4537743	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8117	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr8.55038063.+	chr8	55038063	55038064	+	0	NA	Intergenic	SVA_F|Other|Other	-9718	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
chr22.48136508.+	chr22	48136508	48136509	+	0	NA	Intergenic	Intergenic	-109190	NR_033377	400932	Hs.561058	NM_001001693	ENSG00000205634	FLJ46257	-	uncharacterized LOC400932	miscRNA
chr2.101214340.+	chr2	101214340	101214341	+	0	NA	Intergenic	AluY|SINE|Alu	34922	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr14.23503732.-	chr14	23503732	23503733	-	0	NA	"intron (NM_001130725, intron 1 of 2)"	"intron (NM_001130725, intron 1 of 2)"	-622	NM_001144932	5693	Hs.422990	NM_001130725	ENSG00000100804	PSMB5	LMPX|MB1|X	"proteasome (prosome, macropain) subunit, beta type, 5"	protein-coding
chr4.1626680.+	chr4	1626680	1626681	+	0	NA	Intergenic	CpG	59038	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr4.54204863.+	chr4	54204863	54204864	+	0	NA	"intron (NM_152540, intron 2 of 8)"	AluYa5|SINE|Alu	27379	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr4.55034904.+	chr4	55034904	55034905	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60360	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr10.134299992.+	chr10	134299992	134299993	+	0	NA	Intergenic	Intergenic	41278	NM_173541	170393	Hs.375059	NM_173541		C10orf91	RP11-432J24.4|bA432J24.4	chromosome 10 open reading frame 91	protein-coding
chr2.48811037.+	chr2	48811037	48811038	+	0	NA	"intron (NM_172311, intron 2 of 10)"	AluSg|SINE|Alu	3311	NM_001198594	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr2.58077697.+	chr2	58077697	58077698	+	0	NA	Intergenic	Intergenic	-196080	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr2.170666409.+	chr2	170666409	170666410	+	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	11087	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr14.31683137.+	chr14	31683137	31683138	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6448	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	-	HECT domain containing E3 ubiquitin protein ligase 1	protein-coding
chr14.103988585.+	chr14	103988585	103988586	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	611	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr9.127626599.+	chr9	127626599	127626600	+	0	NA	Intergenic	AluSx|SINE|Alu	-2359	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr7.130418547.+	chr7	130418547	130418548	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	341	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr2.242530370.+	chr2	242530370	242530371	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	26546	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chrM.6555.+	chrM	6555	6556	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr22.51001303.+	chr22	51001303	51001304	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	25	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr6.168219511.+	chr6	168219511	168219512	+	0	NA	Intergenic	AluSp|SINE|Alu	7965	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr4.72877019.+	chr4	72877019	72877020	+	0	NA	Intergenic	AluY|SINE|Alu	-20502	NM_004885	10886	Hs.99231	NM_001144756	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
chr3.194791882.+	chr3	194791882	194791883	+	0	NA	"intron (NM_152531, intron 3 of 3)"	"intron (NM_152531, intron 3 of 3)"	200013	NM_152531	152002	Hs.743284	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
chr10.28650997.-	chr10	28650997	28650998	-	0	NA	Intergenic	AluY|SINE|Alu	79930	NM_173496	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	"membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)"	protein-coding
chr17.59482752.-	chr17	59482752	59482753	-	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	-5495	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr16.89160553.+	chr16	89160553	89160554	+	0	NA	"intron (NM_001127214, intron 1 of 9)"	CpG	336	NM_174917	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr14.97183859.-	chr14	97183859	97183860	-	0	NA	Intergenic	AluY|SINE|Alu	79825	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr1.65532945.+	chr1	65532945	65532946	+	0	NA	Intergenic	CpG	-8754	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr8.23097398.+	chr8	23097398	23097399	+	0	NA	Intergenic	AluY|SINE|Alu	-3752	NM_152272	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
chr3.37245170.+	chr3	37245170	37245171	+	0	NA	Intergenic	AluSx1|SINE|Alu	-27319	NM_006309	9209	Hs.740522	NM_001134369	ENSG00000093167	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
chr1.114299598.+	chr1	114299598	114299599	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2179	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr5.1770146.-	chr5	1770146	1770147	-	0	NA	Intergenic	L1MB5|LINE|L1	-29810	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr16.632113.-	chr16	632113	632114	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7244	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr4.185174128.+	chr4	185174128	185174129	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35014	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr16.84212681.-	chr16	84212681	84212682	-	0	NA	"exon (NM_005679, exon 14 of 14)"	"exon (NM_005679, exon 14 of 14)"	-7995	NM_139353	9013	Hs.153022	NM_001243156	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa"	protein-coding
chr19.39887083.-	chr19	39887083	39887084	-	0	NA	"intron (NM_017592, intron 3 of 3)"	"intron (NM_017592, intron 3 of 3)"	-5120	NM_017592	55588	Hs.611541	NM_017592	ENSG00000063322	MED29	IXL	mediator complex subunit 29	protein-coding
chr19.267141.+	chr19	267141	267142	+	0	NA	Intergenic	CpG	24028	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr7.6312150.-	chr7	6312150	6312151	-	0	NA	promoter-TSS (NM_004227)	promoter-TSS (NM_004227)	-92	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
chr17.2731916.+	chr17	2731916	2731917	+	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	32184	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr11.19881564.-	chr11	19881564	19881565	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99935	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr19.5409951.+	chr19	5409951	5409952	+	0	NA	Intergenic	AluY|SINE|Alu	-45475	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr17.36830941.-	chr17	36830941	36830942	-	0	NA	"5' UTR (NM_001130677, exon 1 of 1)"	"5' UTR (NM_001130677, exon 1 of 1)"	-246	NM_001130677	100170841	Hs.445574	NM_001130677	ENSG00000179294	C17orf96	-	chromosome 17 open reading frame 96	protein-coding
chr22.38245556.+	chr22	38245556	38245557	+	0	NA	"intron (NM_016091, intron 1 of 12)"	CpG	177	NM_001242923	51386	Hs.446852	NM_001242923	ENSG00000100129	EIF3L	EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005	"eukaryotic translation initiation factor 3, subunit L"	protein-coding
chr19.38631832.+	chr19	38631832	38631833	+	0	NA	"exon (NM_015073, exon 11 of 22)"	"exon (NM_015073, exon 11 of 22)"	83058	NM_001135155	8193	Hs.631576	NM_001135155	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	"D4, zinc and double PHD fingers family 1"	protein-coding
chr5.45596284.+	chr5	45596284	45596285	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99936	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr9.100616594.+	chr9	100616594	100616595	+	0	NA	"exon (NM_004473, exon 1 of 1)"	"exon (NM_004473, exon 1 of 1)"	1057	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2	forkhead box E1 (thyroid transcription factor 2)	protein-coding
chr22.50608398.+	chr22	50608398	50608399	+	0	NA	promoter-TSS (NR_027691)	promoter-TSS (NR_027691)	-762	NR_027691	56666	Hs.440092	NM_001160300	ENSG00000073150	PANX2	PX2|hPANX2	pannexin 2	protein-coding
chr3.20070776.-	chr3	20070776	20070777	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10748	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr9.108210407.-	chr9	108210407	108210408	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-82	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chrX.122993628.-	chrX	122993628	122993629	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	34	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr10.104238469.-	chr10	104238469	104238470	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17299	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr4.26862246.-	chr4	26862246	26862247	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	67	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr14.77600314.+	chr14	77600314	77600315	+	0	NA	"intron (NM_174976, intron 2 of 2)"	"intron (NM_174976, intron 2 of 2)"	7820	NM_174976	283576	Hs.525485	NM_174976	ENSG00000177108	ZDHHC22	C14orf59	"zinc finger, DHHC-type containing 22"	protein-coding
chr3.49479490.+	chr3	49479490	49479491	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12733	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr13.50701762.+	chr13	50701762	50701763	+	0	NA	Intergenic	CpG-6444	-2085	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr4.123063377.-	chr4	123063377	123063378	-	0	NA	Intergenic	AluSg7|SINE|Alu	28381	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr4.1852239.-	chr4	1852239	1852240	-	0	NA	"intron (NM_012318, intron 1 of 13)"	"intron (NM_012318, intron 1 of 13)"	-5735	NM_012318	3954	Hs.120165	NM_012318	ENSG00000168924	LETM1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding
chr20.60981275.+	chr20	60981275	60981276	+	0	NA	"intron (NM_031215, intron 1 of 9)"	"intron (NM_031215, intron 1 of 9)"	1064	NM_031215	81928	Hs.301040	XM_003960792	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
chr16.81282930.+	chr16	81282930	81282931	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10634	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr1.53770290.-	chr1	53770290	53770291	-	0	NA	"intron (NM_033300, intron 2 of 16)"	"intron (NM_033300, intron 2 of 16)"	-23531	NM_004631	7804	Hs.280387	NM_001018054		LRP8	APOER2|HSZ75190|LRP-8|MCI1	"low density lipoprotein receptor-related protein 8, apolipoprotein e receptor"	protein-coding
chr5.176292935.+	chr5	176292935	176292936	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33398	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr6.168209547.-	chr6	168209547	168209548	-	0	NA	Intergenic	AluSq|SINE|Alu	12008	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr4.77066235.+	chr4	77066235	77066236	+	0	NA	"intron (NM_017426, intron 1 of 11)"	AluY|SINE|Alu	3420	NM_017426	53371	Hs.430435	NM_017426	ENSG00000138750	NUP54	-	nucleoporin 54kDa	protein-coding
chr19.9311191.-	chr19	9311191	9311192	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14356	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr3.31574004.+	chr3	31574004	31574005	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-487	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr17.48195599.-	chr17	48195599	48195600	-	0	NA	"exon (NM_174920, exon 3 of 11)"	"exon (NM_174920, exon 3 of 11)"	-11647	NM_174920	201191	Hs.567769	NM_001257359	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
chr2.58077678.-	chr2	58077678	58077679	-	0	NA	Intergenic	Intergenic	196099	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr9.127099230.+	chr9	127099230	127099231	+	0	NA	"intron (NM_001166170, intron 7 of 9)"	AluSx|SINE|Alu	-16522	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	miscRNA
chr14.23702008.+	chr14	23702008	23702009	+	0	NA	Intergenic	SVA_C|Other|Other	-49139	NM_012244	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	"solute carrier family 7 (amino acid transporter light chain, L system), member 8"	protein-coding
chr5.694020.+	chr5	694020	694021	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-510	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr1.16166952.+	chr1	16166952	16166953	+	0	NA	"intron (NR_024279, intron 1 of 1)"	AluSc8|SINE|Alu	-7407	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chr14.78656020.-	chr14	78656020	78656021	-	0	NA	"intron (NR_073547, intron 1 of 20)"	AluSx|SINE|Alu	-19304	NR_073547	9369	Hs.368307	NM_001105250	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
chr6.333811.+	chr6	333811	333812	+	0	NA	"intron (NM_020185, intron 3 of 7)"	"intron (NM_020185, intron 3 of 7)"	41710	NM_020185	56940	Hs.29106	NM_020185		DUSP22	JKAP|JSP1|LMWDSP2|MKPX|VHX	dual specificity phosphatase 22	protein-coding
chr11.86869664.+	chr11	86869664	86869665	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	120778	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr22.38498778.+	chr22	38498778	38498779	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7898	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr2.71562039.+	chr2	71562039	71562040	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3154	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr14.71374361.+	chr14	71374361	71374362	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	239	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr16.4537727.-	chr16	4537727	4537728	-	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	8132	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr11.120093187.-	chr11	120093187	120093188	-	0	NA	"intron (NM_178507, intron 1 of 3)"	AluSx|SINE|Alu	-11440	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr10.134216429.-	chr10	134216429	134216430	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5727	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr6.143226996.-	chr6	143226996	143226997	-	0	NA	"intron (NM_006734, intron 1 of 9)"	AluSz6|SINE|Alu	-39342	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chr12.133328248.+	chr12	133328248	133328249	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10203	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr18.77645553.+	chr18	77645553	77645554	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	21885	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr10.88411552.-	chr10	88411552	88411553	-	0	NA	Intergenic	Intergenic	2762	NM_001030015	94233	Hs.283922	NM_001030015	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
chr9.134449921.+	chr9	134449921	134449922	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43259	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr1.32122088.-	chr1	32122088	32122089	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11250	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr7.1156144.-	chr7	1156144	1156145	-	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	-21749	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chr20.32873737.+	chr20	32873737	32873738	+	0	NA	"intron (NM_000687, intron 8 of 9)"	AluY|SINE|Alu	17478	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr12.8830975.-	chr12	8830975	8830976	-	0	NA	Intergenic	AluSp|SINE|Alu	15542	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr5.122861581.+	chr5	122861581	122861582	+	0	NA	"intron (NM_001270574, intron 1 of 9)"	AluY|SINE|Alu	13788	NM_001270573	1456	Hs.741716	NM_001031812	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	"casein kinase 1, gamma 3"	protein-coding
chr19.6307846.-	chr19	6307846	6307847	-	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	-25794	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr17.72203132.-	chr17	72203132	72203133	-	0	NA	"intron (NM_001035258, intron 3 of 4)"	AluY|SINE|Alu	-3337	NM_001035258	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr16.632075.-	chr16	632075	632076	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7282	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr22.46303259.+	chr22	46303259	46303260	+	0	NA	Intergenic	Intergenic	69749	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr1.45571568.+	chr1	45571568	45571569	+	0	NA	"intron (NM_020883, intron 1 of 13)"	SVA_A|Other|Other	93763	NR_036510	7389	Hs.78601	NM_000374	ENSG00000126088	UROD	PCT|UPD	uroporphyrinogen decarboxylase	protein-coding
chr20.52741088.+	chr20	52741088	52741089	+	0	NA	Intergenic	AluSx1|SINE|Alu	49428	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr16.1351034.+	chr16	1351034	1351035	+	0	NA	Intergenic	Intergenic	-8120	NM_194260	7329	Hs.302903	NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin-conjugating enzyme E2I	protein-coding
chr19.58932910.+	chr19	58932910	58932911	+	0	NA	Intergenic	AluSg|SINE|Alu	12847	NM_173548	201514	Hs.439551	NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
chr1.27293974.+	chr1	27293974	27293975	+	0	NA	Intergenic	AluSx|SINE|Alu	-7073	NM_152365	126695	Hs.188881	NM_152365	ENSG00000175707	C1orf172	RP11-344H11.3	chromosome 1 open reading frame 172	protein-coding
chr1.24513604.-	chr1	24513604	24513605	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-161	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr2.211494536.-	chr2	211494536	211494537	-	0	NA	"intron (NM_001122634, intron 11 of 27)"	AluY|SINE|Alu	-12241	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	miscRNA
chr9.83508.-	chr9	83508	83509	-	0	NA	Intergenic	SVA_E|Other|Other	-34909	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr19.586961.+	chr19	586961	586962	+	0	NA	Intergenic	L2b|LINE|L2	-2932	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr9.99114712.+	chr9	99114712	99114713	+	0	NA	"intron (NM_007001, intron 4 of 11)"	AluSx|SINE|Alu	31280	NM_007001	11046	Hs.731624	NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	"solute carrier family 35, member D2"	protein-coding
chr6.3955787.-	chr6	3955787	3955788	-	0	NA	Intergenic	AluSx1|SINE|Alu	65782	NM_003913	8899	Hs.159014	NM_003913	ENSG00000112739	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	PRP4 pre-mRNA processing factor 4 homolog B (yeast)	protein-coding
chrX.129231036.-	chrX	129231036	129231037	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13439	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr2.24809088.-	chr2	24809088	24809089	-	0	NA	"intron (NM_003743, intron 1 of 20)"	AluSx1|SINE|Alu	-1742	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
chr8.27127612.+	chr8	27127612	27127613	+	0	NA	Intergenic	AluY|SINE|Alu	-11709	NM_030795	81551	Hs.201058	NM_030795	ENSG00000015592	STMN4	RB3	stathmin-like 4	protein-coding
chr1.167095639.+	chr1	167095639	167095640	+	0	NA	"exon (NM_001080426, exon 5 of 5)"	"exon (NM_001080426, exon 5 of 5)"	31552	NM_001080426	92235	Hs.632462	NM_001080426	ENSG00000198842	DUSP27	-	dual specificity phosphatase 27 (putative)	protein-coding
chr2.239058260.-	chr2	239058260	239058261	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10897	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr8.9006659.+	chr8	9006659	9006660	+	0	NA	"intron (NM_001201329, intron 1 of 1)"	AluY|SINE|Alu	1561	NM_024607	79660	Hs.458513	NM_001201329	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	"protein phosphatase 1, regulatory subunit 3B"	protein-coding
chr7.158670994.-	chr7	158670994	158670995	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21725	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr7.73149749.-	chr7	73149749	73149750	-	0	NA	TTS (NR_026910)	TTS (NR_026910)	-350	NR_026690	171022	Hs.650513	NR_026690	ENSG00000225969	LINC00035	ABHD11-AS1|NCRNA00035|WBSCR26	long intergenic non-protein coding RNA 35	miscRNA
chr1.10727901.+	chr1	10727901	10727902	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128832	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr5.27408035.+	chr5	27408035	27408036	+	0	NA	Intergenic	AluY|SINE|Alu	-64364	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr1.178011408.+	chr1	178011408	178011409	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4266	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr19.18180372.+	chr19	18180372	18180373	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17325	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr8.86089538.+	chr8	86089538	86089539	+	0	NA	promoter-TSS (NM_001951)	promoter-TSS (NM_001951)	-81	NM_001083588	1875	Hs.445758	NM_001083588	ENSG00000133740	E2F5	E2F-5	"E2F transcription factor 5, p130-binding"	protein-coding
chr1.228290249.-	chr1	228290249	228290250	-	0	NA	"exon (NM_024319, exon 4 of 8)"	"exon (NM_024319, exon 4 of 8)"	-773	NM_024319	79169	Hs.743343	NM_024319	ENSG00000143793	C1orf35	MMTAG2|hMMTAG2	chromosome 1 open reading frame 35	protein-coding
chr11.777234.+	chr11	777234	777235	+	0	NA	"intron (NM_182612, intron 1 of 7)"	CpG	253	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr10.134216456.-	chr10	134216456	134216457	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5754	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr16.53446768.-	chr16	53446768	53446769	-	0	NA	Intergenic	LTR12D|LTR|ERV1	21583	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr2.80188706.-	chr2	80188706	80188707	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	312221	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr18.53096800.-	chr18	53096800	53096801	-	0	NA	"intron (NM_001243231, intron 3 of 17)"	AluY|SINE|Alu	7077	NM_001243233	6925	Hs.605153	NM_001083962	ENSG00000196628	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|TCF-4|bHLHb19	transcription factor 4	protein-coding
chr20.48080482.-	chr20	48080482	48080483	-	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	-18699	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr21.38403704.+	chr21	38403704	38403705	+	0	NA	Intergenic	AluJb|SINE|Alu	24841	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	DSCR6	RIPPLY3	Down syndrome critical region gene 6	protein-coding
chrX.53111561.-	chrX	53111561	53111562	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-19	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr21.43198246.+	chr21	43198246	43198247	+	0	NA	Intergenic	Intergenic	-10997	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr3.186501081.-	chr3	186501081	186501082	-	0	NA	promoter-TSS (NM_001967)	promoter-TSS (NM_001967)	280	NM_001967	1974	Hs.599481	NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
chr15.76627367.-	chr15	76627367	76627368	-	0	NA	Intergenic	AluSg|SINE|Alu	1780	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr3.77689542.-	chr3	77689542	77689543	-	0	NA	"intron (NM_002942, intron 24 of 25)"	AluY|SINE|Alu	-542379	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr13.21872303.+	chr13	21872303	21872304	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	39	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr14.93129948.-	chr14	93129948	93129949	-	0	NA	"intron (NM_024832, intron 7 of 9)"	"intron (NM_024832, intron 7 of 9)"	-85099	NM_001008530	5641	Hs.18069	NM_001008530	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
chr15.29130798.+	chr15	29130798	29130799	+	0	NA	Intergenic	CpG	-36977	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr7.764625.+	chr7	764625	764626	+	0	NA	"intron (NM_001164759, intron 1 of 10)"	AluY|SINE|Alu	-1713	NM_017802	54919	Hs.535896	NM_017802	ENSG00000164818	HEATR2	CILD18	HEAT repeat containing 2	protein-coding
chr5.138488051.-	chr5	138488051	138488052	-	0	NA	"intron (NM_022464, intron 1 of 9)"	AluSx1|SINE|Alu	-46014	NM_022464	64374	Hs.483521	NM_001037633	ENSG00000120725	SIL1	BAP|MSS|ULG5	"SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)"	protein-coding
chr10.835545.-	chr10	835545	835546	-	0	NA	Intergenic	Intergenic	99937	NM_014974	22982	Hs.432397	NM_014974	ENSG00000151240	DIP2C	KIAA0934	DIP2 disco-interacting protein 2 homolog C (Drosophila)	protein-coding
chr9.90728849.+	chr9	90728849	90728850	+	0	NA	Intergenic	REP522|Satellite|telo	21051	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	"SPATA31 subfamily C, member 2"	protein-coding
chrX.42145042.-	chrX	42145042	42145043	-	0	NA	Intergenic	SVA_D|Other|Other	362755	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr12.33592701.-	chr12	33592701	33592702	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-53	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr4.148516398.-	chr4	148516398	148516399	-	0	NA	Intergenic	AluY|SINE|Alu	22141	NM_018241	55751	Hs.203896	NM_018241		TMEM184C	TMEM34	transmembrane protein 184C	protein-coding
chr1.32122094.+	chr1	32122094	32122095	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11256	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chrX.19862919.+	chrX	19862919	19862920	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42825	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr22.46423440.-	chr22	46423440	46423441	-	0	NA	Intergenic	CpG	-17308	NR_027036	100271722	Hs.528519	NR_027036		LOC100271722	-	uncharacterized LOC100271722	miscRNA
chr17.7108735.-	chr17	7108735	7108736	-	0	NA	"intron (NM_001128827, intron 2 of 19)"	"intron (NM_001128827, intron 2 of 19)"	11709	NM_001270447	37	Hs.437178	NM_000018	ENSG00000072778	ACADVL	ACAD6|LCACD|VLCAD	"acyl-CoA dehydrogenase, very long chain"	protein-coding
chr6.70692599.+	chr6	70692599	70692600	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116151	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr9.4666431.+	chr9	4666431	4666432	+	0	NA	"intron (NM_001039395, intron 1 of 10)"	"intron (NM_001039395, intron 1 of 10)"	243	NM_001039395	55064	Hs.179615	NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6-like	protein-coding
chr2.121244124.-	chr2	121244124	121244125	-	0	NA	Intergenic	Intergenic	20199	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr8.14882303.+	chr8	14882303	14882304	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171284	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr16.2051312.-	chr16	2051312	2051313	-	0	NA	"intron (NM_178167, intron 8 of 13)"	"intron (NM_178167, intron 8 of 13)"	-8510	NM_178167	90850	Hs.343828	NM_178167	ENSG00000167962	ZNF598	-	zinc finger protein 598	protein-coding
chr16.50142566.+	chr16	50142566	50142567	+	0	NA	Intergenic	AluSz6|SINE|Alu	42685	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr4.190662172.+	chr4	190662172	190662173	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199802	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr1.228744047.+	chr1	228744047	228744048	+	0	NA	Intergenic	Intergenic	-36347	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr15.25149748.+	chr15	25149748	25149749	+	0	NA	"intron (NM_022807, intron 3 of 12)"	AluSx|SINE|Alu	48050	NM_022805	6638	Hs.743549	NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
chr18.7360805.-	chr18	7360805	7360806	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-129668	NM_001105581	339291	Hs.647588	NM_001105581	ENSG00000206422	LRRC30	-	leucine rich repeat containing 30	protein-coding
chr15.20462446.-	chr15	20462446	20462447	-	0	NA	Intergenic	Intergenic	25551	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr21.45232267.+	chr21	45232267	45232268	+	0	NA	"non-coding (NR_026961, exon 1 of 2)"	"non-coding (NR_026961, exon 1 of 2)"	181	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr22.34378902.-	chr22	34378902	34378903	-	0	NA	Intergenic	AluSx1|SINE|Alu	62486	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr20.30619218.-	chr20	30619218	30619219	-	0	NA	"3' UTR (NM_080625, exon 9 of 9)"	"3' UTR (NM_080625, exon 9 of 9)"	20773	NM_001172131	3055	Hs.655210	NM_001172129	ENSG00000101336	HCK	JTK9|p59Hck|p61Hck	hemopoietic cell kinase	protein-coding
chr4.40014091.-	chr4	40014091	40014092	-	0	NA	Intergenic	AluY|SINE|Alu	34515	NM_001100399	23244	Hs.331431	NM_001100399	ENSG00000121892	PDS5A	SCC-112|SCC112	"PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)"	protein-coding
chr1.188418072.+	chr1	188418072	188418073	+	0	NA	Intergenic	AluY|SINE|Alu	1620040	NM_024420	5321	Hs.497200	NM_024420	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2-alpha	"phospholipase A2, group IVA (cytosolic, calcium-dependent)"	protein-coding
chr11.92637343.+	chr11	92637343	92637344	+	0	NA	Intergenic	AluY|SINE|Alu	-65446	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr4.177147010.-	chr4	177147010	177147011	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30188	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr11.1266534.-	chr11	1266534	1266535	-	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	-22239	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr1.194964708.+	chr1	194964708	194964709	+	0	NA	Intergenic	AluYa5|SINE|Alu	1586903	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr12.94947003.+	chr12	94947003	94947004	+	0	NA	Intergenic	AluSx|SINE|Alu	-8562	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr13.111805968.+	chr13	111805968	111805969	+	0	NA	promoter-TSS (NM_003899)	promoter-TSS (NM_003899)	-93	NM_003899	8874	Hs.508738	NM_001113511	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor (GEF) 7	protein-coding
chr16.31932513.-	chr16	31932513	31932514	-	0	NA	Intergenic	AluY|SINE|Alu	-47434	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr15.81247589.-	chr15	81247589	81247590	-	0	NA	Intergenic	AluY|SINE|Alu	-34616	NM_015154	23184	Hs.732380	NM_015154	ENSG00000117899	MESDC2	BOCA|MESD	mesoderm development candidate 2	protein-coding
chr1.21663155.-	chr1	21663155	21663156	-	0	NA	"intron (NM_001113348, intron 1 of 18)"	AluY|SINE|Alu	-8879	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr2.10198536.+	chr2	10198536	10198537	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14164	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr2.43254217.+	chr2	43254217	43254218	+	0	NA	Intergenic	Intergenic	199528	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr19.40729346.-	chr19	40729346	40729347	-	0	NA	"exon (NM_024877, exon 4 of 5)"	"exon (NM_024877, exon 4 of 5)"	-3251	NM_024877	79935	Hs.631603	NM_024877	ENSG00000105219	CNTD2	-	cyclin N-terminal domain containing 2	protein-coding
chr10.118467666.+	chr10	118467666	118467667	+	0	NA	"intron (NM_025015, intron 1 of 11)"	"intron (NM_025015, intron 1 of 11)"	34419	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr2.39384042.-	chr2	39384042	39384043	-	0	NA	Intergenic	AluSx1|SINE|Alu	36438	NM_005633	6654	Hs.732497	NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4	son of sevenless homolog 1 (Drosophila)	protein-coding
chr14.101679087.-	chr14	101679087	101679088	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142839	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr3.128362573.-	chr3	128362573	128362574	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7146	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr17.73439518.+	chr17	73439518	73439519	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13146	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr2.240980374.-	chr2	240980374	240980375	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2025	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr17.73615828.+	chr17	73615828	73615829	+	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	-13686	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr2.103322621.-	chr2	103322621	103322622	-	0	NA	"intron (NM_003048, intron 11 of 11)"	AluYb8|SINE|Alu	-30716	NM_032718	84804	Hs.720914	NM_032718		MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
chr7.99799990.+	chr7	99799990	99799991	+	0	NA	"non-coding (NR_028039, exon 8 of 8)"	"non-coding (NR_028039, exon 8 of 8)"	-16881	NM_024070	79037	Hs.729356	NM_024070	ENSG00000213413	PVRIG	C7orf15	poliovirus receptor related immunoglobulin domain containing	protein-coding
chr3.33155560.-	chr3	33155560	33155561	-	0	NA	"5' UTR (NM_006371, exon 1 of 7)"	"5' UTR (NM_006371, exon 1 of 7)"	-110	NM_006371	10491	Hs.517888	NM_006371		CRTAP	CASP|LEPREL3|OI7	cartilage associated protein	protein-coding
chr10.131769841.-	chr10	131769841	131769842	-	0	NA	Intergenic	CpG-3433	7750	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr14.21741106.-	chr14	21741106	21741107	-	0	NA	Intergenic	AluSx1|SINE|Alu	3468	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chrX.132930103.-	chrX	132930103	132930104	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189570	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr3.36494714.+	chr3	36494714	36494715	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72617	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr12.50621229.+	chr12	50621229	50621230	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4741	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr6.89378004.-	chr6	89378004	89378005	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295344	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr17.77746695.+	chr17	77746695	77746696	+	0	NA	Intergenic	Intergenic	-5282	NM_005189	84733	Hs.368410	NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox homolog 2	protein-coding
chr14.103988589.-	chr14	103988589	103988590	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-607	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr11.1319612.+	chr11	1319612	1319613	+	0	NA	"intron (NM_019009, intron 1 of 5)"	"intron (NM_019009, intron 1 of 5)"	11280	NM_019009	54472	Hs.368527	NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
chr1.197418603.+	chr1	197418603	197418604	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181269	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr18.66365986.+	chr18	66365986	66365987	+	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	16367	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr4.186887700.-	chr4	186887700	186887701	-	0	NA	Intergenic	AluSx1|SINE|Alu	9830	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chrX.86721031.-	chrX	86721031	86721032	-	0	NA	Intergenic	SVA_C|Other|Other	51684	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr1.147380606.-	chr1	147380606	147380607	-	0	NA	"exon (NM_005267, exon 2 of 2)"	"exon (NM_005267, exon 2 of 2)"	-5660	NM_005267	2703	Hs.632441	NM_005267	ENSG00000121634	GJA8	CAE|CAE1|CX50|CZP1|MP70	"gap junction protein, alpha 8, 50kDa"	protein-coding
chr14.73651094.-	chr14	73651094	73651095	-	0	NA	"intron (NM_000021, intron 5 of 11)"	SVA_F|Other|Other	-47951	NM_007318	5663	Hs.3260	NM_000021	ENSG00000080815	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
chr18.21826548.-	chr18	21826548	21826549	-	0	NA	"intron (NM_001242508, intron 3 of 15)"	AluSx|SINE|Alu	-25648	NM_018030	114876	Hs.370725	NM_001242508	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
chr19.6307844.+	chr19	6307844	6307845	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25796	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr13.50222175.-	chr13	50222175	50222176	-	0	NA	Intergenic	AluY|SINE|Alu	-19740	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr19.11711141.+	chr19	11711141	11711142	+	0	NA	"intron (NM_145295, intron 1 of 3)"	AluY|SINE|Alu	2906	NM_145295	199692	Hs.526665	NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
chr6.108315276.+	chr6	108315276	108315277	+	0	NA	Intergenic	AluSz|SINE|Alu	-35794	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr16.33393304.-	chr16	33393304	33393305	-	0	NA	Intergenic	AluSx1|SINE|Alu	94602	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr10.73847835.-	chr10	73847835	73847836	-	0	NA	"intron (NM_001134434, intron 2 of 2)"	CpG	-696	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr19.16136968.+	chr19	16136968	16136969	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7555	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr6.126100206.-	chr6	126100206	126100207	-	0	NA	Intergenic	AluY|SINE|Alu	2101	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr20.39978527.+	chr20	39978527	39978528	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8967	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr6.74964958.-	chr6	74964958	74964959	-	0	NA	Intergenic	SVA_C|Other|Other	-559444	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr13.77954552.-	chr13	77954552	77954553	-	0	NA	Intergenic	AluSc|SINE|Alu	53375	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr17.4697376.+	chr17	4697376	4697377	+	0	NA	Intergenic	AluY|SINE|Alu	-2063	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr6.165953173.-	chr6	165953173	165953174	-	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	-122415	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr22.43238154.-	chr22	43238154	43238155	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15254	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr5.123857451.+	chr5	123857451	123857452	+	0	NA	Intergenic	LTR12C|LTR|ERV1	223354	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
chr19.53979650.-	chr19	53979650	53979651	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8661	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr7.66064188.-	chr7	66064188	66064189	-	0	NA	Intergenic	AluY|SINE|Alu	20690	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr9.74383564.-	chr9	74383564	74383565	-	0	NA	"5' UTR (NM_001135820, exon 1 of 23)"	"5' UTR (NM_001135820, exon 1 of 23)"	-236	NM_013390	23670	Hs.494146	NM_001135820	ENSG00000135048	TMEM2	-	transmembrane protein 2	protein-coding
chr11.1990795.-	chr11	1990795	1990796	-	0	NA	Intergenic	Intergenic	-20355	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	miscRNA
chr9.37800568.+	chr9	37800568	37800569	+	0	NA	promoter-TSS (NM_024345)	promoter-TSS (NM_024345)	-222	NM_024345	79269	Hs.118394	NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
chr11.119091953.+	chr11	119091953	119091954	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14967	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr4.178730001.+	chr4	178730001	178730002	+	0	NA	"intron (NR_028342, intron 2 of 5)"	AluY|SINE|Alu	80090	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LOC285501	-	uncharacterized LOC285501	miscRNA
chr8.60674632.+	chr8	60674632	60674633	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519322	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr15.30396175.+	chr15	30396175	30396176	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	240	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr19.19656409.+	chr19	19656409	19656410	+	0	NA	"exon (NM_153221, exon 8 of 8)"	"exon (NM_153221, exon 8 of 8)"	7335	NM_153221	148113	Hs.279574	NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
chr4.162440601.-	chr4	162440601	162440602	-	0	NA	"intron (NM_001128427, intron 10 of 15)"	AluY|SINE|Alu	-644585	NM_020116	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr20.18441240.-	chr20	18441240	18441241	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6589	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr4.1222158.+	chr4	1222158	1222159	+	0	NA	"intron (NM_001012614, intron 3 of 9)"	"intron (NM_001012614, intron 3 of 9)"	-19408	NR_024569	100130872	Hs.302963	NR_024569		LOC100130872	-	uncharacterized LOC100130872	miscRNA
chr13.50222210.-	chr13	50222210	50222211	-	0	NA	Intergenic	AluY|SINE|Alu	-19775	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr7.5629209.+	chr7	5629209	5629210	+	0	NA	Intergenic	AluJo|SINE|Alu	-3227	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr16.84754587.-	chr16	84754587	84754588	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	-21032	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr22.20776409.+	chr22	20776409	20776410	+	0	NA	Intergenic	AluSx1|SINE|Alu	15737	NM_182895	91179	Hs.474251	NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	"scavenger receptor class F, member 2"	protein-coding
chr14.65518622.+	chr14	65518622	65518623	+	0	NA	"intron (NM_001202559, intron 11 of 13)"	AluY|SINE|Alu	7216	NR_039855	100616490		NR_039855		MIR4706	-	microRNA 4706	miscRNA
chr5.65279955.-	chr5	65279955	65279956	-	0	NA	"intron (NM_001253699, intron 1 of 25)"	"intron (NM_001253699, intron 1 of 25)"	38554	NR_028474	100303749	Hs.608060	NR_028474		LOC100303749	-	"LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene"	pseudo
chr13.50138580.-	chr13	50138580	50138581	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21139	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chrX.15336046.-	chrX	15336046	15336047	-	0	NA	Intergenic	AluY|SINE|Alu	2300	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr2.232543144.+	chr2	232543144	232543145	+	0	NA	Intergenic	Intergenic	-30091	NM_002823	5757	Hs.459927	NM_001099285	ENSG00000187514	PTMA	TMSA	"prothymosin, alpha"	protein-coding
chr8.7414116.+	chr8	7414116	7414117	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2510	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr19.14142615.-	chr19	14142615	14142616	-	0	NA	promoter-TSS (NM_004843)	promoter-TSS (NM_004843)	-63	NM_004843	9466	Hs.352155	NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	"interleukin 27 receptor, alpha"	protein-coding
chr15.76627309.+	chr15	76627309	76627310	+	0	NA	Intergenic	AluSg|SINE|Alu	-1838	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr10.35559799.+	chr10	35559799	35559800	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23846	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr14.92578729.-	chr14	92578729	92578730	-	0	NA	Intergenic	AluY|SINE|Alu	5764	NR_028453	4287	Hs.532632	NM_001127696	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
chr17.20588541.-	chr17	20588541	20588542	-	0	NA	Intergenic	SVA_D|Other|Other	27218	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr20.62670135.+	chr20	62670135	62670136	+	0	NA	"non-coding (NR_027687, exon 3 of 3)"	"non-coding (NR_027687, exon 3 of 3)"	4438	NR_027687	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr14.19890306.+	chr14	19890306	19890307	+	0	NA	Intergenic	CpG	-4063	NR_073460	101101776	Hs.617315	NR_073460		LOC101101776	-	ribosome biogenesis protein BMS1 homolog pseudogene	pseudo
chr19.33793976.+	chr19	33793976	33793977	+	0	NA	promoter-TSS (NM_004364)	promoter-TSS (NM_004364)	213	NR_026887	80054	Hs.287521	NM_024988		CEBPA-AS1	-	CEBPA antisense RNA 1 (head to head)	miscRNA
chr2.242143612.-	chr2	242143612	242143613	-	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	-15688	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr4.5892152.+	chr4	5892152	5892153	+	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	-1837	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chrM.6515.+	chrM	6515	6516	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chrX.69569664.-	chrX	69569664	69569665	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59785	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr18.41408392.+	chr18	41408392	41408393	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550777	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr16.68390607.+	chr16	68390607	68390608	+	0	NA	"exon (NM_001184824, exon 16 of 17)"	"exon (NM_001184824, exon 16 of 17)"	45730	NM_019023	54496	Hs.653193	NM_001184824	ENSG00000132600	PRMT7	-	protein arginine methyltransferase 7	protein-coding
chr15.30396193.+	chr15	30396193	30396194	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	258	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr7.150812773.+	chr7	150812773	150812774	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28947	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr13.114001918.-	chr13	114001918	114001919	-	0	NA	"intron (NM_024719, intron 4 of 7)"	"intron (NM_024719, intron 4 of 7)"	-16545	NM_024719	79774	Hs.170904	NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
chr17.65774785.+	chr17	65774785	65774786	+	0	NA	Intergenic	AluSx|SINE|Alu	37999	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr11.84718569.+	chr11	84718569	84718570	+	0	NA	"intron (NM_001142699, intron 6 of 27)"	AluY|SINE|Alu	-84104	NM_001364	1740	Hs.367656	NM_001142699	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	"discs, large homolog 2 (Drosophila)"	protein-coding
chr2.11541680.-	chr2	11541680	11541681	-	0	NA	"intron (NR_047499, intron 2 of 2)"	AluY|SINE|Alu	-7573	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	miscRNA
chr17.18575699.-	chr17	18575699	18575700	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-795	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr9.138800045.+	chr9	138800045	138800046	+	0	NA	Intergenic	CpG-27310	-1040	NM_015447	157922	Hs.522493	NM_015447	ENSG00000130559	CAMSAP1	PRO2405|bA100C15.1	calmodulin regulated spectrin-associated protein 1	protein-coding
chr19.47628023.+	chr19	47628023	47628024	+	0	NA	Intergenic	AluY|SINE|Alu	-6057	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr2.204121222.-	chr2	204121222	204121223	-	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	-18058	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr13.47735059.+	chr13	47735059	47735060	+	0	NA	Intergenic	LTR12|LTR|ERV1	-263848	NM_000621	3356	Hs.72630	NM_000621		HTR2A	5-HT2A|HTR2	"5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled"	protein-coding
chr2.121244112.+	chr2	121244112	121244113	+	0	NA	Intergenic	Intergenic	-20187	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr1.6051339.+	chr1	6051339	6051340	+	0	NA	"intron (NM_015102, intron 1 of 29)"	"intron (NM_015102, intron 1 of 29)"	-1019	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr7.2944146.-	chr7	2944146	2944147	-	0	NA	Intergenic	Intergenic	60187	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr7.155246315.-	chr7	155246315	155246316	-	0	NA	Intergenic	Intergenic	4509	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr7.2679410.-	chr7	2679410	2679411	-	0	NA	"intron (NM_025250, intron 1 of 13)"	"intron (NM_025250, intron 1 of 13)"	-7807	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety homolog 3 (Drosophila)	protein-coding
chr1.27372947.-	chr1	27372947	27372948	-	0	NA	Intergenic	Intergenic	33614	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	RP11-344H11.8	"family with sequence similarity 46, member B"	protein-coding
chr13.29293188.-	chr13	29293188	29293189	-	0	NA	promoter-TSS (NM_181785)	promoter-TSS (NM_181785)	38	NM_181785	283537	Hs.117167	NM_001135919	ENSG00000139508	SLC46A3	FKSG16	"solute carrier family 46, member 3"	protein-coding
chr16.440479.+	chr16	440479	440480	+	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	-6713	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr22.18131982.+	chr22	18131982	18131983	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6446	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr10.12798676.-	chr10	12798676	12798677	-	0	NA	"intron (NM_020397, intron 3 of 9)"	AluY|SINE|Alu	76457	NR_027322	283070	Hs.600547	NR_027322		LOC283070	-	uncharacterized LOC283070	miscRNA
chr17.29255140.-	chr17	29255140	29255141	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6386	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr16.89034086.+	chr16	89034086	89034087	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9418	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr16.28634766.+	chr16	28634766	28634767	+	0	NA	"5' UTR (NM_177536, exon 1 of 6)"	"5' UTR (NM_177536, exon 1 of 6)"	141	NM_177536	6817	Hs.736805	NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|PST|ST1A1|ST1A3|STP|STP1|TSPST1	"sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1"	protein-coding
chr4.1358114.+	chr4	1358114	1358115	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	17010	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr4.1626681.+	chr4	1626681	1626682	+	0	NA	Intergenic	CpG	59037	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr13.20343665.-	chr13	20343665	20343666	-	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	-13494	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr1.37546490.+	chr1	37546490	37546491	+	0	NA	Intergenic	SVA_D|Other|Other	-46646	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr18.77627513.+	chr18	77627513	77627514	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3845	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr7.158671011.-	chr7	158671011	158671012	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21742	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr5.132299433.+	chr5	132299433	132299434	+	0	NA	promoter-TSS (NM_014423)	promoter-TSS (NM_014423)	-79	NM_014423	27125	Hs.664840	NM_014423	ENSG00000072364	AFF4	AF5Q31|MCEF	"AF4/FMR2 family, member 4"	protein-coding
chr19.695889.+	chr19	695889	695890	+	0	NA	promoter-TSS (NM_214710)	promoter-TSS (NM_214710)	-428	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chr9.33167446.-	chr9	33167446	33167447	-	0	NA	promoter-TSS (NM_001497)	promoter-TSS (NM_001497)	90	NM_001497	2683	Hs.272011	NM_001497	ENSG00000086062	B4GALT1	B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1	"UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1"	protein-coding
chr14.60336290.-	chr14	60336290	60336291	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1267	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr12.53369448.-	chr12	53369448	53369449	-	0	NA	Intergenic	Intergenic	25798	NM_001256293	3856	Hs.708445	NM_001256282	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
chr9.131013031.-	chr9	131013031	131013032	-	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	5722	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr6.85476300.+	chr6	85476300	85476301	+	0	NA	Intergenic	Intergenic	-2346	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr2.242836730.-	chr2	242836730	242836731	-	0	NA	Intergenic	Intergenic	-24844	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr7.155991305.-	chr7	155991305	155991306	-	0	NA	Intergenic	Intergenic	-246977	NR_038232	285889	Hs.407095	NR_038232	ENSG00000233878	LOC285889	-	uncharacterized LOC285889	miscRNA
chr22.17589606.+	chr22	17589606	17589607	+	0	NA	"exon (NM_014339, exon 13 of 13)"	"exon (NM_014339, exon 13 of 13)"	12607	NM_031890	27439	Hs.209577	NM_001163079	ENSG00000183307	CECR6	-	"cat eye syndrome chromosome region, candidate 6"	protein-coding
chr6.151771587.-	chr6	151771587	151771588	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1729	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr12.46411949.+	chr12	46411949	46411950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-27548	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chr20.62108055.+	chr20	62108055	62108056	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4062	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr16.75551494.-	chr16	75551494	75551495	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-17574	NM_024533	23563	Hs.710689	NM_024533	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5	protein-coding
chr3.15147876.-	chr3	15147876	15147877	-	0	NA	Intergenic	AluSz|SINE|Alu	7221	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr19.2931343.+	chr19	2931343	2931344	+	0	NA	Intergenic	AluY|SINE|Alu	13626	NM_021217	58492	Hs.38004	NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
chr7.91257058.+	chr7	91257058	91257059	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252958	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr7.1286198.-	chr7	1286198	1286199	-	0	NA	Intergenic	CpG	-13544	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr19.49186325.-	chr19	49186325	49186326	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10061	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr19.693337.+	chr19	693337	693338	+	0	NA	"intron (NM_214710, intron 2 of 4)"	AluJb|SINE|Alu	2124	NM_214710	400668	Hs.245146	NM_214710	ENSG00000185198	PRSS57	PRSSL1|UNQ782	"protease, serine, 57"	protein-coding
chr12.33592629.+	chr12	33592629	33592630	+	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	125	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr21.43109551.+	chr21	43109551	43109552	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10089	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr1.58530595.+	chr1	58530595	58530596	+	0	NA	"intron (NM_021080, intron 1 of 16)"	AluYc3|SINE|Alu	185616	NM_021080	1600	Hs.477370	NM_021080	ENSG00000173406	DAB1	-	"Dab, reelin signal transducer, homolog 1 (Drosophila)"	protein-coding
chr2.47660762.+	chr2	47660762	47660763	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30556	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr3.42642504.-	chr3	42642504	42642505	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-68	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr6.142795159.+	chr6	142795159	142795160	+	0	NA	Intergenic	AluSc|SINE|Alu	163814	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr10.125611140.-	chr10	125611140	125611141	-	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	-40360	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr19.14083702.+	chr19	14083702	14083703	+	0	NA	"exon (NM_002918, exon 9 of 21)"	"exon (NM_002918, exon 9 of 21)"	-19498	NM_001146254	79883	Hs.448497	NM_001146254	ENSG00000132000	PODNL1	SLRR5B	podocan-like 1	protein-coding
chr6.88118003.-	chr6	88118003	88118004	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-313	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr14.51521336.-	chr14	51521336	51521337	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41086	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr2.242480076.-	chr2	242480076	242480077	-	0	NA	Intergenic	Intergenic	18070	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr4.85886931.+	chr4	85886931	85886932	+	0	NA	"intron (NM_014991, intron 1 of 67)"	CpG	613	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr2.120282011.-	chr2	120282011	120282012	-	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	-17	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr19.44489487.-	chr19	44489487	44489488	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1165	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr5.177026855.+	chr5	177026855	177026856	+	0	NA	promoter-TSS (NM_007255)	promoter-TSS (NM_007255)	-264	NM_007255	11285	Hs.455109	NM_007255	ENSG00000027847	B4GALT7	XGALT1|XGPT1	"xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7"	protein-coding
chr2.173292734.-	chr2	173292734	173292735	-	0	NA	"intron (NM_000210, intron 1 of 25)"	CpG	-420	NM_001079818	3655	Hs.133397	NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6B|VLA-6	"integrin, alpha 6"	protein-coding
chr3.20353488.-	chr3	20353488	20353489	-	0	NA	Intergenic	AluYk4|SINE|Alu	125764	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr12.121168038.+	chr12	121168038	121168039	+	0	NA	"intron (NM_000017, intron 2 of 9)"	AluSg|SINE|Alu	4467	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	"acyl-CoA dehydrogenase, C-2 to C-3 short chain"	protein-coding
chr15.43777635.-	chr15	43777635	43777636	-	0	NA	"intron (NM_001141979, intron 4 of 27)"	AluY|SINE|Alu	-7719	NM_001141980	7158	Hs.440968	NM_001141979	ENSG00000067369	TP53BP1	53BP1|p202	tumor protein p53 binding protein 1	protein-coding
chr11.5315842.-	chr11	5315842	5315843	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7334	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr4.186058047.+	chr4	186058047	186058048	+	0	NA	Intergenic	AluJb|SINE|Alu	-6370	NM_001151	291	Hs.246506	NM_001151		SLC25A4	AAC1|ANT|ANT1|PEO2|PEO3|T1	"solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4"	protein-coding
chr3.192127648.-	chr3	192127648	192127649	-	0	NA	promoter-TSS (NM_021032)	promoter-TSS (NM_021032)	810	NM_021032	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr5.1770166.-	chr5	1770166	1770167	-	0	NA	Intergenic	L1MB5|LINE|L1	-29790	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr4.5892131.-	chr4	5892131	5892132	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1816	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr2.232202229.+	chr2	232202229	232202230	+	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	-25190	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr19.13497324.+	chr19	13497324	13497325	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119950	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr19.3644533.+	chr19	3644533	3644534	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17720	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr9.108210421.-	chr9	108210421	108210422	-	0	NA	promoter-TSS (NM_207647)	promoter-TSS (NM_207647)	-96	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr10.35336408.+	chr10	35336408	35336409	+	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	26850	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr18.70534383.-	chr18	70534383	70534384	-	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	-427	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr19.12606198.-	chr19	12606198	12606199	-	0	NA	Intergenic	CpG	10566	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr22.51042034.+	chr22	51042034	51042035	+	0	NA	"intron (NM_012324, intron 3 of 11)"	"intron (NM_012324, intron 3 of 11)"	472	NM_016431	23542	Hs.558180	NM_012324	ENSG00000008735	MAPK8IP2	IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
chr10.135270813.-	chr10	135270813	135270814	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3381	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr8.144512801.+	chr8	144512801	144512802	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-199	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr3.95669594.-	chr3	95669594	95669595	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	267557	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr2.106682170.-	chr2	106682170	106682171	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-57	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr16.1070065.+	chr16	1070065	1070066	+	0	NA	Intergenic	CpG	38257	NM_014587	30812	Hs.243678	NM_014587	ENSG00000005513	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
chr19.2984215.-	chr19	2984215	2984216	-	0	NA	"intron (NM_024760, intron 4 of 15)"	"intron (NM_024760, intron 4 of 15)"	-6679	NM_001143986	79816	Hs.334507	NM_001143986	ENSG00000104953	TLE6	GRG6	"transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)"	protein-coding
chr1.153574097.-	chr1	153574097	153574098	-	0	NA	Intergenic	AluY|SINE|Alu	-11417	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr17.18179045.-	chr17	18179045	18179046	-	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	-14621	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr17.40536633.+	chr17	40536633	40536634	+	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	3772	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr10.12344473.-	chr10	12344473	12344474	-	0	NA	Intergenic	AluSc8|SINE|Alu	47110	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr5.172640571.+	chr5	172640571	172640572	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21744	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr12.127940606.-	chr12	127940606	127940607	-	0	NA	Intergenic	CpG	425556	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr17.744668.-	chr17	744668	744669	-	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	-22683	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr2.174617796.-	chr2	174617796	174617797	-	0	NA	Intergenic	AluSx4|SINE|Alu	-211151	NM_001017371	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr16.46387669.-	chr16	46387669	46387670	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215340	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr5.14460428.-	chr5	14460428	14460429	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121463	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr11.10004515.+	chr11	10004515	10004516	+	0	NA	"intron (NM_030962, intron 13 of 39)"	L1PA17|LINE|L1	-223435	NR_033972	440028	Hs.677541	NR_033972	ENSG00000245522	LOC440028	-	uncharacterized LOC440028	miscRNA
chr8.66541203.+	chr8	66541203	66541204	+	0	NA	"intron (NM_018120, intron 1 of 6)"	AluSx1|SINE|Alu	5249	NM_018120	55156	Hs.269542	NM_018120	ENSG00000104442	ARMC1	Arcp	armadillo repeat containing 1	protein-coding
chr3.47017631.+	chr3	47017631	47017632	+	0	NA	"intron (NM_144716, intron 2 of 7)"	AluSz|SINE|Alu	360	NR_102269	151903	Hs.744750	NM_001277074	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
chr10.104238476.-	chr10	104238476	104238477	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17306	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr8.129430401.+	chr8	129430401	129430402	+	0	NA	Intergenic	AluSx3|SINE|Alu	268039	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	miscRNA
chr20.45571511.+	chr20	45571511	45571512	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48248	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr17.65335475.-	chr17	65335475	65335476	-	0	NA	Intergenic	AluSx|SINE|Alu	-27246	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr3.82554668.-	chr3	82554668	82554669	-	0	NA	Intergenic	MER52A|LTR|ERV1	743718	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr7.86688779.+	chr7	86688779	86688780	+	0	NA	"exon (NM_001142749, exon 1 of 22)"	"exon (NM_001142749, exon 1 of 22)"	235	NM_001142749	222223	Hs.208093	NM_001142749	ENSG00000164659	KIAA1324L	EIG121L	KIAA1324-like	protein-coding
chrX.122910224.-	chrX	122910224	122910225	-	0	NA	Intergenic	AluJo|SINE|Alu	43320	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr2.43253942.+	chr2	43253942	43253943	+	0	NA	Intergenic	Intergenic	199803	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr8.67533621.+	chr8	67533621	67533622	+	0	NA	Intergenic	AluSc8|SINE|Alu	-8141	NM_001080416	4603	Hs.445898	NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	v-myb myeloblastosis viral oncogene homolog (avian)-like 1	protein-coding
chr13.89907349.-	chr13	89907349	89907350	-	0	NA	Intergenic	AluSx1|SINE|Alu	-309318	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	miscRNA
chr22.18399498.-	chr22	18399498	18399499	-	0	NA	"intron (NM_001136004, intron 1 of 22)"	L2a|LINE|L2	-64229	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	miscRNA
chr10.8150600.+	chr10	8150600	8150601	+	0	NA	Intergenic	AluY|SINE|Alu	53933	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr13.20387495.+	chr13	20387495	20387496	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30336	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr2.198058482.+	chr2	198058482	198058483	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117039	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chrX.144902918.-	chrX	144902918	144902919	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-52	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr13.112666490.-	chr13	112666490	112666491	-	0	NA	Intergenic	Intergenic	55423	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr1.10727956.-	chr1	10727956	10727957	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128777	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr7.87681602.-	chr7	87681602	87681603	-	0	NA	"intron (NM_004194, intron 3 of 28)"	AluY|SINE|Alu	-118036	NM_021721	53616	Hs.256398	NM_004194	ENSG00000008277	ADAM22	ADAM 22|MDC2	ADAM metallopeptidase domain 22	protein-coding
chr7.157234980.-	chr7	157234980	157234981	-	0	NA	Intergenic	CpG	-105269	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr9.19088612.+	chr9	19088612	19088613	+	0	NA	"intron (NM_001270890, intron 5 of 16)"	AluSx1|SINE|Alu	14328	NM_017645	54801	Hs.533468	NM_001270890	ENSG00000147874	HAUS6	Dgt6|FAM29A	"HAUS augmin-like complex, subunit 6"	protein-coding
chr9.133797634.-	chr9	133797634	133797635	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-16605	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr8.6940524.+	chr8	6940524	6940525	+	0	NA	Intergenic	Intergenic	-26265	NM_021010	1670	Hs.655233	NM_021010	ENSG00000164816	DEFA5	DEF5|HD-5	"defensin, alpha 5, Paneth cell-specific"	protein-coding
chr7.106810316.-	chr7	106810316	106810317	-	0	NA	"intron (NM_012257, intron 1 of 10)"	CpG	-856	NM_012257	26959	Hs.162032	NM_001244262	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
chr11.7603240.-	chr11	7603240	7603241	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15177	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chrX.147774562.+	chrX	147774562	147774563	+	0	NA	"intron (NM_002025, intron 3 of 20)"	AluY|SINE|Alu	-26053	NM_001170628	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr2.115918929.-	chr2	115918929	115918930	-	0	NA	promoter-TSS (NM_001004360)	promoter-TSS (NM_001004360)	9	NR_036580	389023	Hs.97540	NR_036580	ENSG00000235026	LOC389023	-	uncharacterized LOC389023	miscRNA
chr8.23131076.+	chr8	23131076	23131077	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14536	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr16.632129.-	chr16	632129	632130	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7228	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr2.65794852.+	chr2	65794852	65794853	+	0	NA	Intergenic	AluY|SINE|Alu	-135196	NM_181784	200734	Hs.59332	NM_001128210	ENSG00000198369	SPRED2	Spred-2	"sprouty-related, EVH1 domain containing 2"	protein-coding
chr14.77457168.+	chr14	77457168	77457169	+	0	NA	Intergenic	AluSp|SINE|Alu	37874	NM_024496	64207	Hs.744332	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
chr6.159320599.-	chr6	159320599	159320600	-	0	NA	"intron (NM_001195032, intron 2 of 2)"	AluY|SINE|Alu	-10980	NM_001195032	100130967	Hs.32804	NM_001195032		C6orf99	yR211F11.1	chromosome 6 open reading frame 99	protein-coding
chr14.106358728.+	chr14	106358728	106358729	+	0	NA	Intergenic	Intergenic	-25110	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr6.166855357.+	chr6	166855357	166855358	+	0	NA	"intron (NM_001006932, intron 15 of 21)"	"intron (NM_001006932, intron 15 of 21)"	23514	NR_046793	100874353	Hs.675698	NR_046793		RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1 (non-protein coding)	miscRNA
chr12.20930581.+	chr12	20930581	20930582	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-33057	NM_019844	28234	Hs.504966	NM_019844	ENSG00000111700	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	"solute carrier organic anion transporter family, member 1B3"	protein-coding
chr15.59227309.-	chr15	59227309	59227310	-	0	NA	Intergenic	AluSz|SINE|Alu	1457	NM_001013843	79811	Hs.512932	NM_017968	ENSG00000137776	SLTM	Met	"SAFB-like, transcription modulator"	protein-coding
chr16.1815039.+	chr16	1815039	1815040	+	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	6671	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr22.38498783.+	chr22	38498783	38498784	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7893	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr18.77397824.-	chr18	77397824	77397825	-	0	NA	Intergenic	CpG	41977	NM_004715	9150	Hs.734021	NM_001202504	ENSG00000060069	CTDP1	CCFDN|FCP1	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1"	protein-coding
chr7.151348456.+	chr7	151348456	151348457	+	0	NA	"intron (NM_001040633, intron 4 of 15)"	AluSz|SINE|Alu	-19112	NM_024429	51422	Hs.647072	NM_001040633	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	"protein kinase, AMP-activated, gamma 2 non-catalytic subunit"	protein-coding
chrX.118871975.-	chrX	118871975	118871976	-	0	NA	Intergenic	AluYc|SINE|Alu	20601	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
chr2.202612451.-	chr2	202612451	202612452	-	0	NA	"intron (NM_020919, intron 8 of 33)"	AluY|SINE|Alu	-33444	NM_001135745	57679	Hs.621812	NM_001135745	ENSG00000003393	ALS2	ALS2CR6|ALSJ|IAHSP|PLSJ	amyotrophic lateral sclerosis 2 (juvenile)	protein-coding
chr14.77227738.+	chr14	77227738	77227739	+	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	-497	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr14.51521351.-	chr14	51521351	51521352	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41071	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr6.39156024.-	chr6	39156024	39156025	-	0	NA	TTS (NM_003740)	TTS (NM_003740)	-41227	NM_003740	8645	Hs.444448	NM_003740	ENSG00000164626	KCNK5	K2p5.1|TASK-2|TASK2	"potassium channel, subfamily K, member 5"	protein-coding
chr16.78282846.+	chr16	78282846	78282847	+	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	149519	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr19.44489489.+	chr19	44489489	44489490	+	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	1167	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr6.15189307.-	chr6	15189307	15189308	-	0	NA	Intergenic	SVA_F|Other|Other	56899	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr6.161529482.-	chr6	161529482	161529483	-	0	NA	"intron (NM_005922, intron 21 of 26)"	"intron (NM_005922, intron 21 of 26)"	-53532	NR_024277	79992	Hs.664873	NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1 (non-protein coding)	miscRNA
chr16.56171993.-	chr16	56171993	56171994	-	0	NA	"intron (NR_027078, intron 2 of 4)"	AluJb|SINE|Alu	-53013	NR_027078	283856	Hs.707433	NR_027078	ENSG00000246379	LOC283856	-	uncharacterized LOC283856	miscRNA
chr11.73641094.+	chr11	73641094	73641095	+	0	NA	Intergenic	AluSp|SINE|Alu	-20270	NM_153614	374407	Hs.567888	NM_153614	ENSG00000187726	DNAJB13	RSPH16A|TSARG5|TSARG6	"DnaJ (Hsp40) homolog, subfamily B, member 13"	protein-coding
chr6.24720940.-	chr6	24720940	24720941	-	0	NA	Intergenic	CpG	1537	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr1.197418589.+	chr1	197418589	197418590	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181255	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr7.3124642.+	chr7	3124642	3124643	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41133	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr10.130010355.-	chr10	130010355	130010356	-	0	NA	Intergenic	Intergenic	85887	NM_001145966	4288	Hs.689823	NM_001145966	ENSG00000148773	MKI67	KIA	antigen identified by monoclonal antibody Ki-67	protein-coding
chr14.23233326.+	chr14	23233326	23233327	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2405	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr5.108146233.+	chr5	108146233	108146234	+	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	62710	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chr16.73091806.-	chr16	73091806	73091807	-	0	NA	"intron (NM_001164766, intron 1 of 8)"	CpG	-728	NM_001164766	463	Hs.598297	NM_001164766	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
chrM.790.+	chrM	790	791	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.7246112.+	chr17	7246112	7246113	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6264	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr15.29130795.+	chr15	29130795	29130796	+	0	NA	Intergenic	CpG	-36974	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr17.57884707.+	chr17	57884707	57884708	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33920	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr18.71336750.+	chr18	71336750	71336751	+	0	NA	Intergenic	Intergenic	344574	NR_038340	100505817	Hs.197042	NR_038340	ENSG00000261780	LOC100505817	-	uncharacterized LOC100505817	miscRNA
chr2.101214319.+	chr2	101214319	101214320	+	0	NA	Intergenic	AluY|SINE|Alu	34901	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr14.51818221.+	chr14	51818221	51818222	+	0	NA	"intron (NR_038358, intron 4 of 4)"	AluY|SINE|Alu	18110	NR_038358	283553	Hs.325752	NR_038358	ENSG00000258479	LINC00640	-	long intergenic non-protein coding RNA 640	miscRNA
chr17.11800288.+	chr17	11800288	11800289	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14069	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr5.178157727.-	chr5	178157727	178157728	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	24	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr8.28276764.+	chr8	28276764	28276765	+	0	NA	Intergenic	AluSg|SINE|Alu	-32787	NM_018660	55893	Hs.695998	NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
chr5.1466258.+	chr5	1466258	1466259	+	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	-20715	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr12.76859063.-	chr12	76859063	76859064	-	0	NA	"intron (NM_020841, intron 2 of 23)"	AluY|SINE|Alu	-94526	NM_020841	114882	Hs.430849	NM_001003712	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein-like 8	protein-coding
chr18.72799799.-	chr18	72799799	72799800	-	0	NA	Intergenic	CpG	-121482	NM_175907	284273	Hs.465433	NM_175907		ZADH2	-	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
chr2.203100536.-	chr2	203100536	203100537	-	0	NA	"intron (NM_003352, intron 1 of 4)"	"intron (NM_003352, intron 1 of 4)"	-2786	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr5.170687197.+	chr5	170687197	170687198	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49091	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr1.7952794.+	chr1	7952794	7952795	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39243	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr9.139775633.-	chr9	139775633	139775634	-	0	NA	Intergenic	AluSp|SINE|Alu	5332	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr22.40126821.-	chr22	40126821	40126822	-	0	NA	Intergenic	AluY|SINE|Alu	-160063	NM_001003406	8911	Hs.125116	NM_001003406	ENSG00000100346	CACNA1I	Cav3.3|ca(v)3.3	"calcium channel, voltage-dependent, T type, alpha 1I subunit"	protein-coding
chr19.38011912.-	chr19	38011912	38011913	-	0	NA	"intron (NM_001013659, intron 3 of 7)"	AluY|SINE|Alu	-14071	NM_001013659	390927	Hs.568010	NM_001013659		ZNF793	-	zinc finger protein 793	protein-coding
chr12.52652377.+	chr12	52652377	52652378	+	0	NA	Intergenic	CpG	25423	NM_005556	3855	Hs.670221	NM_005556	ENSG00000135480	KRT7	CK7|K2C7|K7|SCL	keratin 7	protein-coding
chr6.168395127.-	chr6	168395127	168395128	-	0	NA	Intergenic	AluSx|SINE|Alu	17508	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr6.33806200.+	chr6	33806200	33806201	+	0	NA	Intergenic	Intergenic	-34407	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr2.6403069.-	chr2	6403069	6403070	-	0	NA	Intergenic	L2a|LINE|L2	-280959	NR_026833	400940	Hs.378814	NR_026833		LOC400940	-	uncharacterized LOC400940	miscRNA
chr4.8546507.-	chr4	8546507	8546508	-	0	NA	Intergenic	Intergenic	35457	NR_045511	27201	Hs.740355	NM_080819		GPR78	-	G protein-coupled receptor 78	protein-coding
chr6.4780635.+	chr6	4780635	4780636	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3955	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr2.174828940.-	chr2	174828940	174828941	-	0	NA	promoter-TSS (NM_001017371)	promoter-TSS (NM_001017371)	-7	NM_001017371	6670	Hs.531587	NM_001017371	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
chr7.1286180.+	chr7	1286180	1286181	+	0	NA	Intergenic	CpG	13526	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr9.90885139.-	chr9	90885139	90885140	-	0	NA	Intergenic	AluJb|SINE|Alu	118158	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr8.95654241.+	chr8	95654241	95654242	+	0	NA	"exon (NM_017697, exon 2 of 16)"	"exon (NM_017697, exon 2 of 16)"	877	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr11.2213905.+	chr11	2213905	2213906	+	0	NA	Intergenic	Intergenic	19612	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr10.59351298.+	chr10	59351298	59351299	+	0	NA	Intergenic	AluY|SINE|Alu	-286979	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr20.60392353.-	chr20	60392353	60392354	-	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	-136365	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chr12.117361487.-	chr12	117361487	117361488	-	0	NA	"intron (NM_153348, intron 1 of 10)"	AluY|SINE|Alu	-12726	NM_012174	26259	Hs.696428	NM_012174	ENSG00000174989	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
chr18.74451920.+	chr18	74451920	74451921	+	0	NA	Intergenic	Intergenic	82331	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr3.162420980.-	chr3	162420980	162420981	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-600109	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	CT64	-	cancer/testis antigen 64 (non-protein coding)	miscRNA
chr9.131293148.-	chr9	131293148	131293149	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21689	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chrX.122993650.-	chrX	122993650	122993651	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	12	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr11.2051318.-	chr11	2051318	2051319	-	0	NA	Intergenic	Intergenic	32253	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr9.136941011.+	chr9	136941011	136941012	+	0	NA	Intergenic	SVA_B|Other|Other	-7870	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr6.142795157.+	chr6	142795157	142795158	+	0	NA	Intergenic	AluSc|SINE|Alu	163816	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr12.34492675.-	chr12	34492675	34492676	-	0	NA	Intergenic	GSATII|Satellite|centr	-317459	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr10.32635512.-	chr10	32635512	32635513	-	0	NA	"intron (NR_073538, intron 1 of 13)"	CpG	-634	NM_001272004	80314	Hs.743354	NM_001272004	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1 (Drosophila)	protein-coding
chr10.70993525.+	chr10	70993525	70993526	+	0	NA	"intron (NM_025130, intron 4 of 17)"	AluY|SINE|Alu	13466	NM_025130	80201	Hs.522988	NM_025130	ENSG00000156510	HKDC1	-	hexokinase domain containing 1	protein-coding
chr17.7561709.-	chr17	7561709	7561710	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7455	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr1.38155416.-	chr1	38155416	38155417	-	0	NA	"exon (NM_017850, exon 2 of 5)"	"exon (NM_017850, exon 2 of 5)"	-776	NM_017850	54955	Hs.272673	NM_017850	ENSG00000116922	C1orf109	-	chromosome 1 open reading frame 109	protein-coding
chr16.22675458.+	chr16	22675458	22675459	+	0	NA	Intergenic	AluJr|SINE|Alu	-54145	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr18.74451918.+	chr18	74451918	74451919	+	0	NA	Intergenic	Intergenic	82333	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	miscRNA
chr16.53447667.-	chr16	53447667	53447668	-	0	NA	Intergenic	AluJb|SINE|Alu	20684	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr9.129229268.+	chr9	129229268	129229269	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56485	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr11.119091827.-	chr11	119091827	119091828	-	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	-14841	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr14.78266468.+	chr14	78266468	78266469	+	0	NA	promoter-TSS (NM_020421)	promoter-TSS (NM_020421)	42	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr9.140715913.-	chr9	140715913	140715914	-	0	NA	"intron (NM_024757, intron 25 of 26)"	AluJr|SINE|Alu	16958	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	miscRNA
chr3.98451158.+	chr3	98451158	98451159	+	0	NA	promoter-TSS (NM_001271147)	promoter-TSS (NM_001271147)	78	NM_001271147	10402	Hs.148716	NM_001271142	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	"ST3 beta-galactoside alpha-2,3-sialyltransferase 6"	protein-coding
chr5.178032028.-	chr5	178032028	178032029	-	0	NA	"intron (NM_020666, intron 11 of 12)"	AluSx1|SINE|Alu	14472	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr11.638964.+	chr11	638964	638965	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1659	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr7.1542314.-	chr7	1542314	1542315	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1704	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr7.3828759.-	chr7	3828759	3828760	-	0	NA	"intron (NM_152744, intron 4 of 44)"	"intron (NM_152744, intron 4 of 44)"	340558	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr4.26862498.-	chr4	26862498	26862499	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-185	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr14.44126247.+	chr14	44126247	44126248	+	0	NA	Intergenic	AluSc|SINE|Alu	850252	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr2.122878834.+	chr2	122878834	122878835	+	0	NA	Intergenic	AluY|SINE|Alu	365713	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr17.40484847.+	chr17	40484847	40484848	+	0	NA	"intron (NM_003150, intron 10 of 23)"	AluSx|SINE|Alu	45282	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr17.57868974.+	chr17	57868974	57868975	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49653	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr20.62657598.+	chr20	62657598	62657599	+	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	-8099	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr17.72203117.-	chr17	72203117	72203118	-	0	NA	"intron (NM_001035258, intron 3 of 4)"	AluY|SINE|Alu	-3322	NM_001035258	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr16.705434.+	chr16	705434	705435	+	0	NA	"exon (NM_145294, exon 15 of 41)"	"exon (NM_145294, exon 15 of 41)"	6071	NM_145294	197335	Hs.511903	NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19	WD repeat domain 90	protein-coding
chr3.32863287.-	chr3	32863287	32863288	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3777	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chrX.30619876.+	chrX	30619876	30619877	+	0	NA	Intergenic	SVA_F|Other|Other	-23843	NM_025159	80231	Hs.665009	NM_025159	ENSG00000120280	CXorf21	-	chromosome X open reading frame 21	protein-coding
chr18.67270865.-	chr18	67270865	67270866	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202581	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr7.100436433.+	chr7	100436433	100436434	+	0	NA	Intergenic	LTR2|LTR|ERV1	-11290	NM_004444	2050	Hs.437008	NM_004444	ENSG00000196411	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
chr16.75112447.+	chr16	75112447	75112448	+	0	NA	"intron (NM_032268, intron 1 of 4)"	AluSx|SINE|Alu	38223	NM_194436	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
chr2.208183918.-	chr2	208183918	208183919	-	0	NA	Intergenic	AluY|SINE|Alu	151948	NM_001270943	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr12.110327013.+	chr12	110327013	110327014	+	0	NA	Intergenic	AluY|SINE|Alu	-8720	NM_016433	51228	Hs.381256	NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
chr2.98703590.-	chr2	98703590	98703591	-	0	NA	promoter-TSS (NM_144992)	promoter-TSS (NM_144992)	5	NM_144992	200403	Hs.269977	NM_144992	ENSG00000168658	VWA3B	-	von Willebrand factor A domain containing 3B	protein-coding
chr6.170055458.-	chr6	170055458	170055459	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46701	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr12.66636774.-	chr12	66636774	66636775	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53796	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr12.77339571.+	chr12	77339571	77339572	+	0	NA	Intergenic	AluY|SINE|Alu	-66772	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr4.6084857.-	chr4	6084857	6084858	-	0	NA	"intron (NM_001099433, intron 5 of 20)"	AluSx1|SINE|Alu	-117461	NM_001099433	152789	Hs.479066	NM_001099433	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
chr11.77751922.+	chr11	77751922	77751923	+	0	NA	"intron (NM_001203262, intron 1 of 2)"	AluSq2|SINE|Alu	-17602	NM_023930	65987	Hs.709780	NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerisation domain containing 14	protein-coding
chr19.7123261.-	chr19	7123261	7123262	-	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	-53790	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr9.101867451.+	chr9	101867451	101867452	+	0	NA	promoter-TSS (NM_004612)	promoter-TSS (NM_004612)	39	NM_004612	7046	Hs.494622	NM_001130916	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|LDS1A|LDS2A|MSSE|SKR4|TGFR-1	"transforming growth factor, beta receptor 1"	protein-coding
chr12.75694201.-	chr12	75694201	75694202	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29635	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr12.31575295.-	chr12	31575295	31575296	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96136	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr8.144124765.-	chr8	144124765	144124766	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4086	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr16.78282849.-	chr16	78282849	78282850	-	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	-149522	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr1.110881128.-	chr1	110881128	110881129	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-665	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr1.86810052.-	chr1	86810052	86810053	-	0	NA	Intergenic	AluY|SINE|Alu	-51973	NM_001007022	57489	Hs.149360	NM_001007022	ENSG00000122417	ODF2L	RP5-977L11.1|dJ977L11.1	outer dense fiber of sperm tails 2-like	protein-coding
chr9.131293157.+	chr9	131293157	131293158	+	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	-21680	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr1.16972942.+	chr1	16972942	16972943	+	0	NA	"non-coding (NR_027504, exon 2 of 14)"	"non-coding (NR_027504, exon 2 of 14)"	873	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr15.89721778.+	chr15	89721778	89721779	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43144	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr11.70416613.+	chr11	70416613	70416614	+	0	NA	"intron (NM_012309, intron 14 of 22)"	"intron (NM_012309, intron 14 of 22)"	-60586	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	miscRNA
chr19.34310833.+	chr19	34310833	34310834	+	0	NA	Intergenic	CpG	23082	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr2.87655681.-	chr2	87655681	87655682	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	99293	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr12.9102168.+	chr12	9102168	9102169	+	0	NA	"5' UTR (NM_002355, exon 1 of 7)"	"5' UTR (NM_002355, exon 1 of 7)"	189	NM_001207024	4074	Hs.305985	NM_001207024	ENSG00000003056	M6PR	CD-MPR|MPR 46|MPR-46|MPR46|SMPR	mannose-6-phosphate receptor (cation dependent)	protein-coding
chr12.31575302.-	chr12	31575302	31575303	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96143	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr14.105134379.-	chr14	105134379	105134380	-	0	NA	Intergenic	AluSz|SINE|Alu	-9707	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr5.177411752.-	chr5	177411752	177411753	-	0	NA	Intergenic	CpG	-11491	NM_006261	5626	Hs.158301	NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
chr9.129229266.-	chr9	129229266	129229267	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56483	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr15.65796583.+	chr15	65796583	65796584	+	0	NA	"intron (NM_017743, intron 3 of 17)"	AluSp|SINE|Alu	13026	NM_197960	54878	Hs.591106	NM_017743		DPP8	DP8|DPRP1|MSTP141	dipeptidyl-peptidase 8	protein-coding
chr6.166075591.+	chr6	166075591	166075592	+	0	NA	promoter-TSS (NM_001130690)	promoter-TSS (NM_001130690)	-3	NR_045597	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr17.37700977.-	chr17	37700977	37700978	-	0	NA	Intergenic	AluSp|SINE|Alu	-63198	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr7.25990755.+	chr7	25990755	25990756	+	0	NA	Intergenic	CpG	-1149	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148	microRNA 148a	miscRNA
chr18.48557024.+	chr18	48557024	48557025	+	0	NA	"intron (NM_005359, intron 1 of 11)"	CpG	441	NM_005359	4089	Hs.75862	NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
chr16.49892630.+	chr16	49892630	49892631	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-800	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr14.34931658.-	chr14	34931658	34931659	-	0	NA	promoter-TSS (NM_138288)	promoter-TSS (NM_138288)	190	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr7.61969078.+	chr7	61969078	61969079	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795356	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr22.49181545.-	chr22	49181545	49181546	-	0	NA	Intergenic	AluSx1|SINE|Alu	-5438	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	miscRNA
chr13.95987694.-	chr13	95987694	95987695	-	0	NA	Intergenic	AluSz|SINE|Alu	34007	NM_005845	10257	Hs.508423	NM_001105515	ENSG00000125257	ABCC4	EST170205|MOAT-B|MOATB|MRP4	"ATP-binding cassette, sub-family C (CFTR/MRP), member 4"	protein-coding
chr12.113553896.-	chr12	113553896	113553897	-	0	NA	"intron (NM_004658, intron 9 of 21)"	AluSz|SINE|Alu	-19663	NM_001193521	8437	Hs.528693	NM_001193520	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1 (GAP1 like)	protein-coding
chr20.45935923.+	chr20	45935923	45935924	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11323	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr1.28780993.+	chr1	28780993	28780994	+	0	NA	"intron (NM_023923, intron 1 of 12)"	AluYc|SINE|Alu	16332	NM_023923	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr17.1307940.-	chr17	1307940	1307941	-	0	NA	Intergenic	AluSg|SINE|Alu	4384	NM_006761	7531	Hs.513851	NM_006761	ENSG00000108953	YWHAE	14-3-3E|KCIP-1|MDCR|MDS	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide"	protein-coding
chr8.104645109.-	chr8	104645109	104645110	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132133	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr20.62108090.+	chr20	62108090	62108091	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4097	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr5.172424808.+	chr5	172424808	172424809	+	0	NA	"intron (NM_003945, intron 2 of 3)"	AluY|SINE|Alu	14045	NM_003945	8992	Hs.484188	NM_003945		ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	"ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1"	protein-coding
chr6.143858991.-	chr6	143858991	143858992	-	0	NA	Intergenic	AluSx3|SINE|Alu	-24194	NR_027114	285740	Hs.432656	NR_027113		LOC285740	-	uncharacterized LOC285740	miscRNA
chr9.107727043.-	chr9	107727043	107727044	-	0	NA	Intergenic	AluYa5|SINE|Alu	36516	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr6.168352118.+	chr6	168352118	168352119	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25501	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr5.131347263.+	chr5	131347263	131347264	+	0	NA	promoter-TSS (NM_001009185)	promoter-TSS (NM_001009185)	92	NM_015256	23305	Hs.14945	NM_001009185	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long-chain family member 6	protein-coding
chr14.90564827.+	chr14	90564827	90564828	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSc8|SINE|Alu	36719	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr1.55583196.+	chr1	55583196	55583197	+	0	NA	"intron (NM_015306, intron 38 of 67)"	AluYb8|SINE|Alu	78047	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr4.5892137.-	chr4	5892137	5892138	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1822	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr7.2933074.+	chr7	2933074	2933075	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49115	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr7.74306866.-	chr7	74306866	74306867	-	0	NA	promoter-TSS (NR_027777)	promoter-TSS (NR_027777)	28	NR_027776	5383	Hs.647025	NM_174930	ENSG00000123965	PMS2P5	PMS2L5|PMS7	postmeiotic segregation increased 2 pseudogene 5	pseudo
chr16.70133256.-	chr16	70133256	70133257	-	0	NA	Intergenic	AluY|SINE|Alu	14273	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chrX.40029621.-	chrX	40029621	40029622	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6961	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.13497325.+	chr19	13497325	13497326	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119949	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr22.39040963.-	chr22	39040963	39040964	-	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	-11671	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr1.113275263.+	chr1	113275263	113275264	+	0	NA	Intergenic	AluY|SINE|Alu	12074	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr3.45348423.+	chr3	45348423	45348424	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80609	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr2.28801407.+	chr2	28801407	28801408	+	0	NA	"intron (NM_001170585, intron 22 of 56)"	L2c|LINE|L2	82469	NM_153021	151056	Hs.444933	NM_001170585	ENSG00000163803	PLB1	PLB|PLB/LIP|hPLB	phospholipase B1	protein-coding
chr1.246995907.-	chr1	246995907	246995908	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42988	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr5.37382759.+	chr5	37382759	37382760	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3347	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr3.195498057.+	chr3	195498057	195498058	+	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	40787	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr13.111268166.+	chr13	111268166	111268167	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	235	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr11.32609659.-	chr11	32609659	32609660	-	0	NA	"intron (NM_006360, intron 2 of 10)"	AluSg4|SINE|Alu	-4346	NM_006360	10480	Hs.502244	NM_006360		EIF3M	B5|PCID1|TANGO7|hfl-B5	"eukaryotic translation initiation factor 3, subunit M"	protein-coding
chr14.64299481.+	chr14	64299481	64299482	+	0	NA	Intergenic	AluJb|SINE|Alu	-20202	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr15.91370848.-	chr15	91370848	91370849	-	0	NA	Intergenic	AluSz|SINE|Alu	41037	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr11.126225913.+	chr11	126225913	126225914	+	0	NA	promoter-TSS (NR_033839)	promoter-TSS (NR_033839)	124	NM_006278	6484	Hs.591947	NM_001254757	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	"ST3 beta-galactoside alpha-2,3-sialyltransferase 4"	protein-coding
chr18.77633543.-	chr18	77633543	77633544	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-9875	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr10.118467685.+	chr10	118467685	118467686	+	0	NA	"intron (NM_025015, intron 1 of 11)"	"intron (NM_025015, intron 1 of 11)"	34400	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr11.68671219.-	chr11	68671219	68671220	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-84	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr18.74140090.+	chr18	74140090	74140091	+	0	NA	"intron (NM_014643, intron 3 of 7)"	AluSx|SINE|Alu	67056	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
chr12.112426220.-	chr12	112426220	112426221	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24803	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr2.241506132.+	chr2	241506132	241506133	+	0	NA	Intergenic	CpG	-1872	NM_018226	57140	Hs.5345	NM_018226		RNPEPL1	-	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding
chr9.105850358.-	chr9	105850358	105850359	-	0	NA	Intergenic	AluYc|SINE|Alu	-92765	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr5.1770148.+	chr5	1770148	1770149	+	0	NA	Intergenic	L1MB5|LINE|L1	29808	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr10.134423662.-	chr10	134423662	134423663	-	0	NA	"intron (NM_005539, intron 2 of 15)"	"intron (NM_005539, intron 2 of 15)"	-72309	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr7.5629208.-	chr7	5629208	5629209	-	0	NA	Intergenic	AluJo|SINE|Alu	3228	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr15.41539493.-	chr15	41539493	41539494	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16056	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr7.53587101.+	chr7	53587101	53587102	+	0	NA	Intergenic	AluY|SINE|Alu	292523	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr15.41674327.-	chr15	41674327	41674328	-	0	NA	Intergenic	SVA_F|Other|Other	-20331	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr12.6514942.-	chr12	6514942	6514943	-	0	NA	Intergenic	AluSx|SINE|Alu	-21743	NM_002342	4055	Hs.1116	NM_001270987	ENSG00000111321	LTBR	CD18|D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	"lymphotoxin beta receptor (TNFR superfamily, member 3)"	protein-coding
chr22.51001370.+	chr22	51001370	51001371	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-42	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.17020205.-	chr1	17020205	17020206	-	0	NA	"intron (NR_026567, intron 10 of 10)"	CpG	-12455	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	miscRNA
chr10.125228155.+	chr10	125228155	125228156	+	0	NA	Intergenic	AluY|SINE|Alu	-197716	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr22.46492552.-	chr22	46492552	46492553	-	0	NA	"intron (NR_027033, intron 1 of 5)"	"intron (NR_027033, intron 1 of 5)"	-5628	NR_037413	100500828		NR_037413	ENSG00000266533	MIR3619	-	microRNA 3619	miscRNA
chr19.55598106.-	chr19	55598106	55598107	-	0	NA	"exon (NM_017729, exon 13 of 15)"	"exon (NM_017729, exon 13 of 15)"	-6346	NM_017729	54869	Hs.438862	NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1	EPS8-like 1	protein-coding
chr19.21789915.+	chr19	21789915	21789916	+	0	NA	Intergenic	SVA_D|Other|Other	101478	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr3.42642396.+	chr3	42642396	42642397	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	176	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr10.126538769.-	chr10	126538769	126538770	-	0	NA	Intergenic	AluSx|SINE|Alu	-48415	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr8.60674685.+	chr8	60674685	60674686	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519269	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr9.138663324.+	chr9	138663324	138663325	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69293	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr8.6644913.-	chr8	6644913	6644914	-	0	NA	Intergenic	AluY|SINE|Alu	42152	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr6.58777003.+	chr6	58777003	58777004	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-489279	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr2.1588741.-	chr2	1588741	1588742	-	0	NA	Intergenic	Intergenic	-159550	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr6.126111918.+	chr6	126111918	126111919	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	9	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr3.93689339.-	chr3	93689339	93689340	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3595	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr3.119042151.+	chr3	119042151	119042152	+	0	NA	"intron (NM_020754, intron 1 of 11)"	CpG	28931	NM_020754	57514	Hs.668218	NM_020754	ENSG00000031081	ARHGAP31	AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
chr7.63023264.+	chr7	63023264	63023265	+	0	NA	Intergenic	Intergenic	-58204	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr9.1141627.+	chr9	1141627	1141628	+	0	NA	Intergenic	AluY|SINE|Alu	91007	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr8.140742342.-	chr8	140742342	140742343	-	0	NA	TTS (NM_001160372)	TTS (NM_001160372)	27043	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr20.39978562.-	chr20	39978562	39978563	-	0	NA	"intron (NM_022896, intron 6 of 19)"	"intron (NM_022896, intron 6 of 19)"	-9002	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr20.20772538.-	chr20	20772538	20772539	-	0	NA	Intergenic	LTR16A2|LTR|ERVL	79272	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr6.170480704.-	chr6	170480704	170480705	-	0	NA	Intergenic	Intergenic	-90953	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr20.61885501.-	chr20	61885501	61885502	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-171	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr1.114695325.-	chr1	114695325	114695326	-	0	NA	promoter-TSS (NM_205848)	promoter-TSS (NM_205848)	263	NM_205848	148281	Hs.736999	NM_001270805	ENSG00000134207	SYT6	sytVI	synaptotagmin VI	protein-coding
chr1.3038068.+	chr1	3038068	3038069	+	0	NA	"intron (NM_199454, intron 1 of 16)"	CpG	-6471	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr17.37145993.-	chr17	37145993	37145994	-	0	NA	Intergenic	AluY|SINE|Alu	22338	NM_001008777	494188	Hs.549536	NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
chr11.66112290.-	chr11	66112290	66112291	-	0	NA	TTS (NM_006876)	TTS (NM_006876)	-292	NM_015399	25855	Hs.100426	NM_001024957	ENSG00000174744	BRMS1	-	breast cancer metastasis suppressor 1	protein-coding
chr5.128196986.-	chr5	128196986	128196987	-	0	NA	Intergenic	AluYk4|SINE|Alu	104224	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr10.120426972.-	chr10	120426972	120426973	-	0	NA	Intergenic	AluSp|SINE|Alu	71812	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr6.34857459.-	chr6	34857459	34857460	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-421	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr2.233477515.+	chr2	233477515	233477516	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6748	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr4.153983803.-	chr4	153983803	153983804	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	90467	NM_001130067	23321	Hs.435711	NM_001130067	ENSG00000109654	TRIM2	RNF86	tripartite motif containing 2	protein-coding
chr15.89714243.-	chr15	89714243	89714244	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50679	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr8.60674705.-	chr8	60674705	60674706	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-519249	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr10.70231733.+	chr10	70231733	70231734	+	0	NA	promoter-TSS (NM_001080449)	promoter-TSS (NM_001080449)	-3	NM_001080449	1763	Hs.532446	NM_001080449	ENSG00000138346	DNA2	DNA2L|hDNA2	DNA replication helicase 2 homolog (yeast)	protein-coding
chr16.71647925.-	chr16	71647925	71647926	-	0	NA	Intergenic	AluSz|SINE|Alu	12131	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr2.220430170.+	chr2	220430170	220430171	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6098	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr9.10787006.+	chr9	10787006	10787007	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174283	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.242673821.-	chr2	242673821	242673822	-	0	NA	promoter-TSS (NM_152783)	promoter-TSS (NM_152783)	209	NM_152783	728294	Hs.516813	NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
chr2.99466577.-	chr2	99466577	99466578	-	0	NA	"intron (NM_207362, intron 1 of 9)"	"intron (NM_207362, intron 1 of 9)"	-86107	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211-like	protein-coding
chr19.48814098.-	chr19	48814098	48814099	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9234	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr1.101786816.-	chr1	101786816	101786817	-	0	NA	Intergenic	AluY|SINE|Alu	-19635	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr9.74061652.-	chr9	74061652	74061653	-	0	NA	Intergenic	CpG	-322148	NM_013390	23670	Hs.494146	NM_001135820	ENSG00000135048	TMEM2	-	transmembrane protein 2	protein-coding
chr19.1252695.+	chr19	1252695	1252696	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4143	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr20.19987669.+	chr20	19987669	19987670	+	0	NA	Intergenic	AluY|SINE|Alu	-10265	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr7.155246429.+	chr7	155246429	155246430	+	0	NA	Intergenic	CpG	-4395	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr12.100804208.-	chr12	100804208	100804209	-	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	-53351	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr8.101733343.+	chr8	101733343	101733344	+	0	NA	"intron (NM_002568, intron 1 of 14)"	CpG	972	NM_002568	26986	Hs.387804	NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	"poly(A) binding protein, cytoplasmic 1"	protein-coding
chr9.137394477.+	chr9	137394477	137394478	+	0	NA	Intergenic	Intergenic	123220	NR_039816	100616236		NR_039816		MIR4669	-	microRNA 4669	miscRNA
chr9.133922861.+	chr9	133922861	133922862	+	0	NA	"intron (NM_006059, intron 8 of 27)"	Charlie1b|DNA|hAT-Charlie	38357	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	"laminin, gamma 3"	protein-coding
chr2.65087251.+	chr2	65087251	65087252	+	0	NA	Intergenic	Intergenic	72330	NR_036586	400958	Hs.591565	NR_036586		LOC400958	-	uncharacterized LOC400958	miscRNA
chr15.90792661.+	chr15	90792661	90792662	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-103	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr10.99146581.+	chr10	99146581	99146582	+	0	NA	"intron (NM_015179, intron 8 of 33)"	AluY|SINE|Alu	14546	NM_015179	23223	Hs.434251	NM_001145114	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding
chr17.28879211.+	chr17	28879211	28879212	+	0	NA	Intergenic	MIR|SINE|MIR	-7373	NM_015594	26083	Hs.241421	NM_015594	ENSG00000266733	TBC1D29	-	"TBC1 domain family, member 29"	protein-coding
chr2.39267412.+	chr2	39267412	39267413	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79927	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr5.9328756.-	chr5	9328756	9328757	-	0	NA	"intron (NM_003966, intron 4 of 22)"	AluSq|SINE|Alu	-217477	NM_003966	9037	Hs.27621	NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A"	protein-coding
chr21.46737195.+	chr21	46737195	46737196	+	0	NA	Intergenic	Intergenic	29228	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr22.46303174.-	chr22	46303174	46303175	-	0	NA	Intergenic	Intergenic	-69834	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr2.114359773.-	chr2	114359773	114359774	-	0	NA	promoter-TSS (NR_024005)	promoter-TSS (NR_024005)	620	NR_024005	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr16.70148610.+	chr16	70148610	70148611	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1081	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr11.915946.+	chr11	915946	915947	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-888	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr19.18180424.-	chr19	18180424	18180425	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17273	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr19.36209084.-	chr19	36209084	36209085	-	0	NA	"exon (NM_014727, exon 1 of 37)"	"exon (NM_014727, exon 1 of 37)"	-163	NM_014727	9757	Hs.676457	NM_014727	ENSG00000105663	MLL4	HRX2|KMT2B|MLL2|TRX2|WBP7	myeloid/lymphoid or mixed-lineage leukemia 4	protein-coding
chr12.133141214.+	chr12	133141214	133141215	+	0	NA	"intron (NM_001142641, intron 5 of 16)"	AluY|SINE|Alu	45823	NM_001195520	100507055	Hs.282811	NM_001195520		LRCOL1	-	leucine rich colipase-like 1	protein-coding
chr6.154868722.+	chr6	154868722	154868723	+	0	NA	Intergenic	AluY|SINE|Alu	-36969	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding
chr9.107407952.+	chr9	107407952	107407953	+	0	NA	Intergenic	AluSx|SINE|Alu	-27467	NM_001001956	286362	Hs.553682	NM_001001956	ENSG00000136839	OR13C9	OR37L|OR9-13	"olfactory receptor, family 13, subfamily C, member 9"	protein-coding
chr2.88485496.+	chr2	88485496	88485497	+	0	NA	"exon (NM_018271, exon 8 of 8)"	"exon (NM_018271, exon 8 of 8)"	12838	NM_018271	55258	Hs.740434	NM_001244676	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase-like 2 (S. cerevisiae)	protein-coding
chr2.198058471.-	chr2	198058471	198058472	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117050	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr19.34623411.+	chr19	34623411	34623412	+	0	NA	Intergenic	SVA_D|Other|Other	-39941	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr16.81040485.+	chr16	81040485	81040486	+	0	NA	promoter-TSS (NM_020188)	promoter-TSS (NM_020188)	17	NM_020188	56942	Hs.55028	NM_020188		CMC2	2310061C15Rik|C16orf61	COX assembly mitochondrial protein 2 homolog (S. cerevisiae)	protein-coding
chrX.40029659.-	chrX	40029659	40029660	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6923	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr7.1798901.-	chr7	1798901	1798902	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50103	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr19.39228195.-	chr19	39228195	39228196	-	0	NA	"exon (NM_144691, exon 9 of 21)"	"exon (NM_144691, exon 9 of 21)"	-6919	NM_144691	147968	Hs.731775	NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
chr4.183981848.-	chr4	183981848	183981849	-	0	NA	Intergenic	AluJb|SINE|Alu	-23030	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	"family with sequence similarity 92, member A3"	pseudo
chr17.21027132.+	chr17	21027132	21027133	+	0	NA	Intergenic	AluSc|SINE|Alu	-3109	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chrY.13489476.-	chrY	13489476	13489477	-	0	NA	Intergenic	Intergenic	-1043913	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr8.98771763.+	chr8	98771763	98771764	+	0	NA	Intergenic	AluSq10|SINE|Alu	-16046	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr10.133869253.+	chr10	133869253	133869254	+	0	NA	Intergenic	Intergenic	-49060	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr14.105134519.-	chr14	105134519	105134520	-	0	NA	Intergenic	AluSz|SINE|Alu	-9567	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr7.95178757.+	chr7	95178757	95178758	+	0	NA	Intergenic	AluY|SINE|Alu	47168	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr8.145770737.+	chr8	145770737	145770738	+	0	NA	"exon (NM_025251, exon 7 of 13)"	"exon (NM_025251, exon 7 of 13)"	-16279	NM_001001795	414919	Hs.105685	NM_001001795		C8orf82	-	chromosome 8 open reading frame 82	protein-coding
chr13.50177124.-	chr13	50177124	50177125	-	0	NA	Intergenic	AluY|SINE|Alu	17405	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr5.14460473.+	chr5	14460473	14460474	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121418	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr21.47403584.+	chr21	47403584	47403585	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1921	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr9.14830740.+	chr9	14830740	14830741	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51209	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr21.47053539.-	chr21	47053539	47053540	-	0	NA	Intergenic	CpG	91154	NM_194255	6573	Hs.736903	NM_001205206	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	"solute carrier family 19 (folate transporter), member 1"	protein-coding
chr1.100493675.-	chr1	100493675	100493676	-	0	NA	Intergenic	AluSx|SINE|Alu	10114	NM_033055	64645	Hs.124156	NM_033055	ENSG00000156875	HIAT1	-	hippocampus abundant transcript 1	protein-coding
chr3.141771287.-	chr3	141771287	141771288	-	0	NA	"intron (NM_001178139, intron 3 of 12)"	AluY|SINE|Alu	23780	NM_006286	7029	Hs.379018	NM_001178138	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2 (E2F dimerization partner 2)	protein-coding
chr19.35368084.-	chr19	35368084	35368085	-	0	NA	Intergenic	AluY|SINE|Alu	-21763	NR_046222	100652909	Hs.374015	NR_046222		LOC100652909	-	uncharacterized LOC100652909	miscRNA
chr7.64493621.+	chr7	64493621	64493622	+	0	NA	Intergenic	SVA_C|Other|Other	-5111	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr2.241373405.+	chr2	241373405	241373406	+	0	NA	Intergenic	Intergenic	-1710	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr17.61567857.+	chr17	61567857	61567858	+	0	NA	"intron (NM_152830, intron 6 of 13)"	MIR|SINE|MIR	5679	NM_152830	1636	Hs.298469	NM_000789	ENSG00000159640	ACE	ACE1|CD143|DCP|DCP1|ICH|MVCD3	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding
chr17.78021091.-	chr17	78021091	78021092	-	0	NA	"exon (NM_001243342, exon 4 of 18)"	"exon (NM_001243342, exon 4 of 18)"	-10660	NM_017950	55036	Hs.202542	NM_001243342	ENSG00000141519	CCDC40	CILD15	coiled-coil domain containing 40	protein-coding
chr3.136117022.-	chr3	136117022	136117023	-	0	NA	"intron (NM_005862, intron 22 of 33)"	AluSz|SINE|Alu	-147855	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	"propionyl CoA carboxylase, beta polypeptide"	protein-coding
chr9.35728474.+	chr9	35728474	35728475	+	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	-3843	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr2.210525386.+	chr2	210525386	210525387	+	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	80983	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr5.1067395.-	chr5	1067395	1067396	-	0	NA	"intron (NM_006598, intron 17 of 23)"	"intron (NM_006598, intron 17 of 23)"	4306	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr15.20733811.-	chr15	20733811	20733812	-	0	NA	Intergenic	Intergenic	-13303	NM_001145004	727832	Hs.569472	NM_001145004		GOLGA6L6	-	golgin A6 family-like 6	protein-coding
chr6.159360913.-	chr6	159360913	159360914	-	0	NA	Intergenic	CpG	-51294	NM_001195032	100130967	Hs.32804	NM_001195032		C6orf99	yR211F11.1	chromosome 6 open reading frame 99	protein-coding
chr20.34266474.-	chr20	34266474	34266475	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13596	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr21.45971728.+	chr21	45971728	45971729	+	0	NA	promoter-TSS (NM_198693)	promoter-TSS (NM_198693)	-340	NM_198693	386679	Hs.689667	NM_198693	ENSG00000205445	KRTAP10-2	KAP10.2|KAP18-2|KAP18.2|KRTAP10.2|KRTAP18-2|KRTAP18.2	keratin associated protein 10-2	protein-coding
chr7.140185523.-	chr7	140185523	140185524	-	0	NA	Intergenic	FLAM_C|SINE|Alu	6154	NM_013446	23608	Hs.490347	NM_001145125	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
chr16.70148619.-	chr16	70148619	70148620	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1090	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr3.26495154.-	chr3	26495154	26495155	-	0	NA	Intergenic	AluY|SINE|Alu	169146	NM_052953	116135	Hs.517868	NM_052953	ENSG00000179796	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
chr18.77627520.+	chr18	77627520	77627521	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3852	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr20.18441252.+	chr20	18441252	18441253	+	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	6577	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr5.45596283.+	chr5	45596283	45596284	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99937	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr2.1554770.-	chr2	1554770	1554771	-	0	NA	Intergenic	Intergenic	-136590	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr19.48836569.+	chr19	48836569	48836570	+	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	7940	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr21.37627703.-	chr21	37627703	37627704	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64784	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr7.99630235.+	chr7	99630235	99630236	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17016	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr8.101594944.+	chr8	101594944	101594945	+	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	-22930	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chr17.4083377.-	chr17	4083377	4083378	-	0	NA	"intron (NR_047571, intron 15 of 23)"	MER5B|DNA|hAT-Charlie	-36462	NM_001254755	124936	Hs.513871	NM_001254755	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
chr4.2878500.+	chr4	2878500	2878501	+	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	32916	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chrX.42144961.-	chrX	42144961	42144962	-	0	NA	Intergenic	SVA_D|Other|Other	362674	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr6.168671555.+	chr6	168671555	168671556	+	0	NA	Intergenic	Intergenic	48847	NM_214462	168002	Hs.673059	NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|RP11-503C24.7|bA503C24.7	"dapper, antagonist of beta-catenin, homolog 2 (Xenopus laevis)"	protein-coding
chr16.5619143.+	chr16	5619143	5619144	+	0	NA	Intergenic	AluSg|SINE|Alu	-449989	NM_001142333	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr9.114154284.+	chr9	114154284	114154285	+	0	NA	"intron (NM_001080398, intron 29 of 50)"	AluSc8|SINE|Alu	-63571	NM_205859	26248	Hs.381312	NM_205859	ENSG00000171133	OR2K2	HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P	"olfactory receptor, family 2, subfamily K, member 2"	protein-coding
chr2.127808688.+	chr2	127808688	127808689	+	0	NA	"intron (NM_139351, intron 10 of 12)"	"intron (NM_139351, intron 10 of 12)"	56215	NM_139343	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
chr16.89383485.-	chr16	89383485	89383486	-	0	NA	"non-coding (NR_045839, exon 3 of 10)"	"non-coding (NR_045839, exon 3 of 10)"	4056	NM_001242885	100287036	Hs.656995	NM_001242885		LOC100287036	-	uncharacterized LOC100287036	protein-coding
chr13.103088610.-	chr13	103088610	103088611	-	0	NA	Intergenic	AluY|SINE|Alu	34486	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chrM.16353.+	chrM	16353	16354	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.164119666.+	chr3	164119666	164119667	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676617	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr16.4537751.+	chr16	4537751	4537752	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8108	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr22.46326544.-	chr22	46326544	46326545	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46464	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr1.7496364.+	chr1	7496364	7496365	+	0	NA	"intron (NM_015215, intron 5 of 22)"	"intron (NM_015215, intron 5 of 22)"	-334965	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr8.146024460.+	chr8	146024460	146024461	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	199	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr1.244448173.-	chr1	244448173	244448174	-	0	NA	Intergenic	Intergenic	67764	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
chr2.121244110.-	chr2	121244110	121244111	-	0	NA	Intergenic	Intergenic	20185	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr7.157129890.-	chr7	157129890	157129891	-	0	NA	"intron (NM_058246, intron 1 of 9)"	CpG	-179	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr6.44623689.+	chr6	44623689	44623690	+	0	NA	Intergenic	Intergenic	220311	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	miscRNA
chr2.122475142.+	chr2	122475142	122475143	+	0	NA	"intron (NR_037857, intron 3 of 3)"	AluSq2|SINE|Alu	19361	NM_032390	84365	Hs.367842	NM_032390	ENSG00000155438	MKI67IP	NIFK|Nopp34	MKI67 (FHA domain) interacting nucleolar phosphoprotein	protein-coding
chr20.62278654.-	chr20	62278654	62278655	-	0	NA	"intron (NM_015894, intron 1 of 4)"	AluSx1|SINE|Alu	-5465	NM_001276310	50861	Hs.639609	NM_001276310	ENSG00000197457	STMN3	SCLIP	stathmin-like 3	protein-coding
chr8.67618029.+	chr8	67618029	67618030	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6624	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr2.136403839.-	chr2	136403839	136403840	-	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	19128	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr7.155246409.+	chr7	155246409	155246410	+	0	NA	Intergenic	CpG	-4415	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr8.41559465.+	chr8	41559465	41559466	+	0	NA	"intron (NM_020476, intron 21 of 41)"	CpG	-36661	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr13.112726543.+	chr13	112726543	112726544	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4630	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr17.74305358.-	chr17	74305358	74305359	-	0	NA	Intergenic	AluSx|SINE|Alu	1597	NM_032134	84074	Hs.252739	NM_032134	ENSG00000129646	QRICH2	-	glutamine rich 2	protein-coding
chr16.443677.+	chr16	443677	443678	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3515	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr7.136555885.+	chr7	136555885	136555886	+	0	NA	"intron (NM_001006629, intron 1 of 1)"	CpG	1892	NM_001006628	1129	Hs.743546	NM_000739	ENSG00000181072	CHRM2	HM2	"cholinergic receptor, muscarinic 2"	protein-coding
chr20.61428933.-	chr20	61428933	61428934	-	0	NA	"intron (NM_018270, intron 2 of 4)"	"intron (NM_018270, intron 2 of 4)"	-1128	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr16.209954.-	chr16	209954	209955	-	0	NA	Intergenic	Intergenic	6019	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr17.29030313.-	chr17	29030313	29030314	-	0	NA	Intergenic	AluSx|SINE|Alu	6313	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
chr12.43208363.+	chr12	43208363	43208364	+	0	NA	Intergenic	AluY|SINE|Alu	-224791	NM_153026	144165	Hs.720221	NM_001144881	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
chr12.64883640.+	chr12	64883640	64883641	+	0	NA	"intron (NM_013254, intron 12 of 20)"	AluSc8|SINE|Alu	37800	NM_013254	29110	Hs.505874	NM_013254	ENSG00000183735	TBK1	NAK|T2K	TANK-binding kinase 1	protein-coding
chr20.62108035.-	chr20	62108035	62108036	-	0	NA	Intergenic	AluSq2|SINE|Alu	4042	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr1.93266752.-	chr1	93266752	93266753	-	0	NA	Intergenic	AluY|SINE|Alu	8791	NM_005665	7813	Hs.594434	NM_005665	ENSG00000067208	EVI5	NB4S	ecotropic viral integration site 5	protein-coding
chr9.131639054.-	chr9	131639054	131639055	-	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	-5300	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr7.66607921.+	chr7	66607921	66607922	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28537	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr3.20353499.-	chr3	20353499	20353500	-	0	NA	Intergenic	AluYk4|SINE|Alu	125775	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr18.77627580.+	chr18	77627580	77627581	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3912	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr10.44870328.+	chr10	44870328	44870329	+	0	NA	TTS (NM_001033886)	TTS (NM_001033886)	10217	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr12.1288907.+	chr12	1288907	1288908	+	0	NA	"intron (NR_027948, intron 7 of 19)"	AluYa5|SINE|Alu	188503	NR_027946	23085	Hs.601216	NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
chr5.177936355.-	chr5	177936355	177936356	-	0	NA	"intron (NM_173465, intron 2 of 28)"	AluSg7|SINE|Alu	-81201	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr8.14459421.-	chr8	14459421	14459422	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251598	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr2.30248642.+	chr2	30248642	30248643	+	0	NA	Intergenic	AluY|SINE|Alu	-104165	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chrX.132538546.+	chrX	132538546	132538547	+	0	NA	"intron (NM_001448, intron 1 of 8)"	AluSg|SINE|Alu	10659	NM_001448	2239	Hs.58367	NM_001448		GPC4	K-glypican	glypican 4	protein-coding
chr13.89907361.-	chr13	89907361	89907362	-	0	NA	Intergenic	AluSx1|SINE|Alu	-309306	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	miscRNA
chr5.25535476.+	chr5	25535476	25535477	+	0	NA	Intergenic	AluY|SINE|Alu	-694784	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr6.122006971.+	chr6	122006971	122006972	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250226	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr8.41166048.-	chr8	41166048	41166049	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-942	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr4.163164062.+	chr4	163164062	163164063	+	0	NA	Intergenic	AluY|SINE|Alu	-78876	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr16.28332264.-	chr16	28332264	28332265	-	0	NA	"3' UTR (NM_001024401, exon 4 of 4)"	"3' UTR (NM_001024401, exon 4 of 4)"	-28424	NM_001024401	388228	Hs.97837	NM_001024401	ENSG00000188322	SBK1	SBK	SH3-binding domain kinase 1	protein-coding
chr1.8399441.-	chr1	8399441	8399442	-	0	NA	"intron (NM_001080397, intron 6 of 7)"	"intron (NM_001080397, intron 6 of 7)"	-15051	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	"solute carrier family 45, member 1"	protein-coding
chr8.25460434.+	chr8	25460434	25460435	+	0	NA	Intergenic	Intergenic	143921	NM_152562	157313	Hs.33366	NM_152562	ENSG00000184661	CDCA2	Repo-Man	cell division cycle associated 2	protein-coding
chr20.52741106.-	chr20	52741106	52741107	-	0	NA	Intergenic	AluSx1|SINE|Alu	-49410	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr7.90894526.-	chr7	90894526	90894527	-	0	NA	"exon (NM_003505, exon 1 of 1)"	"exon (NM_003505, exon 1 of 1)"	-743	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled family receptor 1	protein-coding
chr12.53535521.+	chr12	53535521	53535522	+	0	NA	Intergenic	AluY|SINE|Alu	22756	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr10.28821789.-	chr10	28821789	28821790	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-367	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr6.12012495.+	chr6	12012495	12012496	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-229	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr11.68303177.+	chr11	68303177	68303178	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74991	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr20.52741076.+	chr20	52741076	52741077	+	0	NA	Intergenic	AluSx1|SINE|Alu	49440	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr6.157734052.+	chr6	157734052	157734053	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11201	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr2.171570191.+	chr2	171570191	171570192	+	0	NA	"non-coding (NR_027433, exon 1 of 1)"	"non-coding (NR_027433, exon 1 of 1)"	886	NR_027433	440925	Hs.668461	NM_001013712	ENSG00000222033	LOC440925	-	uncharacterized LOC440925	miscRNA
chr2.25757648.-	chr2	25757648	25757649	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-115443	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr1.40259980.-	chr1	40259980	40259981	-	0	NA	Intergenic	AluY|SINE|Alu	5447	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr20.26107355.-	chr20	26107355	26107356	-	0	NA	Intergenic	AluSp|SINE|Alu	12678	NR_003678	149934	Hs.711274	NM_001039379	ENSG00000240108	NCOR1P1	C20orf191|bB329D4.2	nuclear receptor corepressor 1 pseudogene 1	pseudo
chr2.234157321.-	chr2	234157321	234157322	-	0	NA	Intergenic	AluSx1|SINE|Alu	2896	NM_001190266	55054	Hs.529322	NM_001190266	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
chr10.17496287.-	chr10	17496287	17496288	-	0	NA	promoter-TSS (NM_001004470)	promoter-TSS (NM_001004470)	33	NM_001004470	338596	Hs.677766	NM_001004470		ST8SIA6	SIA8F|SIAT8F|ST8SIA-VI	"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6"	protein-coding
chr17.63480263.-	chr17	63480263	63480264	-	0	NA	Intergenic	SVA_D|Other|Other	-77477	NM_004655	8313	Hs.156527	NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
chr1.101786811.-	chr1	101786811	101786812	-	0	NA	Intergenic	AluY|SINE|Alu	-19640	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr8.123636964.+	chr8	123636964	123636965	+	0	NA	Intergenic	AluSx|SINE|Alu	-156937	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr10.24476765.+	chr10	24476765	24476766	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20955	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr3.146868672.-	chr3	146868672	146868673	-	0	NA	Intergenic	AluY|SINE|Alu	-241545	NR_033119	84107	Hs.739084	NM_001168378	ENSG00000174963	ZIC4	-	Zic family member 4	protein-coding
chr6.33500270.-	chr6	33500270	33500271	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47800	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr16.46785484.+	chr16	46785484	46785485	+	0	NA	Intergenic	L2b|LINE|L2	-3263	NM_182493	91807	Hs.130465	NM_182493		MYLK3	MLCK|MLCK2|caMLCK	myosin light chain kinase 3	protein-coding
chrX.49682936.+	chrX	49682936	49682937	+	0	NA	Intergenic	AluSz|SINE|Alu	-4289	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr7.3828926.+	chr7	3828926	3828927	+	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	-340391	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chrX.129231029.-	chrX	129231029	129231030	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13446	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr19.21728108.+	chr19	21728108	21728109	+	0	NA	Intergenic	AluYc|SINE|Alu	39671	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr12.68043619.+	chr12	68043619	68043620	+	0	NA	"exon (NM_006482, exon 2 of 3)"	"exon (NM_006482, exon 2 of 3)"	1107	NM_003583	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr18.12390623.-	chr18	12390623	12390624	-	0	NA	Intergenic	AluSx1|SINE|Alu	13348	NM_006796	10939	Hs.726355	NM_006796	ENSG00000141385	AFG3L2	SCA28|SPAX5	AFG3 ATPase family member 3-like 2 (S. cerevisiae)	protein-coding
chr8.143694262.+	chr8	143694262	143694263	+	0	NA	"3' UTR (NM_015193, exon 1 of 3)"	"3' UTR (NM_015193, exon 1 of 3)"	1571	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr4.38809147.+	chr4	38809147	38809148	+	0	NA	Intergenic	SVA_D|Other|Other	-2735	NM_003263	7096	Hs.654532	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll-like receptor 1	protein-coding
chr19.48814065.+	chr19	48814065	48814066	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9267	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr2.90482952.-	chr2	90482952	90482953	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365023	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr16.88125296.-	chr16	88125296	88125297	-	0	NA	Intergenic	Intergenic	-121672	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr18.29729801.-	chr18	29729801	29729802	-	0	NA	Intergenic	AluSp|SINE|Alu	40186	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr1.197754724.-	chr1	197754724	197754725	-	0	NA	Intergenic	AluY|SINE|Alu	10101	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr4.26342354.+	chr4	26342354	26342355	+	0	NA	"intron (NM_015874, intron 1 of 10)"	AluSc|SINE|Alu	19925	NM_203284	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
chrX.112142785.+	chrX	112142785	112142786	+	0	NA	Intergenic	AluY|SINE|Alu	-58742	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr19.644290.+	chr19	644290	644291	+	0	NA	TTS (NM_020637)	TTS (NM_020637)	4364	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr9.131293114.-	chr9	131293114	131293115	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21723	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr14.20811143.+	chr14	20811143	20811144	+	0	NA	promoter-TSS (NM_005484)	promoter-TSS (NM_005484)	427	NR_002312	85495	Hs.613102	NR_002312	ENSG00000252678	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	miscRNA
chr19.51519264.-	chr19	51519264	51519265	-	0	NA	"exon (NM_145888, exon 4 of 6)"	"exon (NM_145888, exon 4 of 6)"	-3690	NM_145888	5655	Hs.275464	NM_001077500	ENSG00000129451	KLK10	NES1|PRSSL1	kallikrein-related peptidase 10	protein-coding
chr3.98256931.+	chr3	98256931	98256932	+	0	NA	Intergenic	AluY|SINE|Alu	6188	NM_005290	2838	Hs.563128	NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
chr6.35497047.-	chr6	35497047	35497048	-	0	NA	Intergenic	AluSp|SINE|Alu	16400	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
chrX.53123423.-	chrX	53123423	53123424	-	0	NA	Intergenic	CpG	-11881	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.181074621.-	chr1	181074621	181074622	-	0	NA	Intergenic	CpG	-16983	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr16.586013.+	chr16	586013	586014	+	0	NA	TTS (NR_049852)	TTS (NR_049852)	697	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	miscRNA
chr2.232557250.+	chr2	232557250	232557251	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15985	NM_002823	5757	Hs.459927	NM_001099285	ENSG00000187514	PTMA	TMSA	"prothymosin, alpha"	protein-coding
chr16.4823713.-	chr16	4823713	4823714	-	0	NA	Intergenic	AluSq2|SINE|Alu	6547	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr6.1876442.+	chr6	1876442	1876443	+	0	NA	"intron (NM_001253846, intron 7 of 10)"	AluSq|SINE|Alu	265761	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr2.168780269.+	chr2	168780269	168780270	+	0	NA	Intergenic	AluY|SINE|Alu	105087	NM_020981	8708	Hs.735833	NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	"UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1"	protein-coding
chr17.29255146.-	chr17	29255146	29255147	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6392	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr9.19088608.+	chr9	19088608	19088609	+	0	NA	"intron (NM_001270890, intron 5 of 16)"	AluSx1|SINE|Alu	14332	NM_017645	54801	Hs.533468	NM_001270890	ENSG00000147874	HAUS6	Dgt6|FAM29A	"HAUS augmin-like complex, subunit 6"	protein-coding
chr3.128194233.-	chr3	128194233	128194234	-	0	NA	Intergenic	Intergenic	8142	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr14.60604664.-	chr14	60604664	60604665	-	0	NA	Intergenic	AluSc8|SINE|Alu	-27547	NM_016029	51635	Hs.59719	NM_016029	ENSG00000100612	DHRS7	SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase (SDR family) member 7	protein-coding
chr7.1788752.+	chr7	1788752	1788753	+	0	NA	Intergenic	Intergenic	39954	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr1.153651999.-	chr1	153651999	153652000	-	0	NA	"exon (NM_000906, exon 1 of 22)"	"exon (NM_000906, exon 1 of 22)"	-835	NM_000906	4881	Hs.490330	NM_000906	ENSG00000169418	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)	protein-coding
chr3.49047737.-	chr3	49047737	49047738	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3100	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr14.74438933.+	chr14	74438933	74438934	+	0	NA	"intron (NM_001249, intron 13 of 15)"	AluSg|SINE|Alu	-21816	NM_152445	145483	Hs.660789	NM_152445	ENSG00000156050	FAM161B	C14orf44|c14_5547	"family with sequence similarity 161, member B"	protein-coding
chr1.194872547.+	chr1	194872547	194872548	+	0	NA	Intergenic	AluSx|SINE|Alu	1679064	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr17.40536569.-	chr17	40536569	40536570	-	0	NA	"intron (NM_139276, intron 1 of 23)"	"intron (NM_139276, intron 1 of 23)"	-3836	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr9.83513.-	chr9	83513	83514	-	0	NA	Intergenic	SVA_E|Other|Other	-34904	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr11.41260612.+	chr11	41260612	41260613	+	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	220574	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chrX.15337015.-	chrX	15337015	15337016	-	0	NA	TTS (NM_002641)	TTS (NM_002641)	3269	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr1.228758927.+	chr1	228758927	228758928	+	0	NA	Intergenic	CpG	-21467	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr12.33592606.-	chr12	33592606	33592607	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-148	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr19.14156272.-	chr19	14156272	14156273	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13699	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr16.443662.-	chr16	443662	443663	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3530	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr6.14927401.-	chr6	14927401	14927402	-	0	NA	Intergenic	AluSz|SINE|Alu	318805	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr3.102973934.+	chr3	102973934	102973935	+	0	NA	Intergenic	SVA_D|Other|Other	820075	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr19.17812201.-	chr19	17812201	17812202	-	0	NA	Intergenic	AluY|SINE|Alu	13193	NM_001080421	23025	Hs.164502	NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A (C. elegans)	protein-coding
chr12.56394751.-	chr12	56394751	56394752	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3708	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr11.16894111.-	chr11	16894111	16894112	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133963	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr2.80188708.-	chr2	80188708	80188709	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	312223	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr19.4065767.-	chr19	4065767	4065768	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1049	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr3.159944102.-	chr3	159944102	159944103	-	0	NA	"exon (NM_001168214, exon 1 of 1)"	"exon (NM_001168214, exon 1 of 1)"	-679	NM_001168214	401097	Hs.729755	NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
chr15.89714256.-	chr15	89714256	89714257	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50666	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr15.44038917.+	chr15	44038917	44038918	+	0	NA	promoter-TSS (NR_002318)	promoter-TSS (NR_002318)	327	NM_005313	2923	Hs.591095	NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HsT17083|P58|PI-PLC	"protein disulfide isomerase family A, member 3"	protein-coding
chr10.112124067.-	chr10	112124067	112124068	-	0	NA	Intergenic	Intergenic	59360	NM_005871	10285	Hs.632093	NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
chr8.56758264.+	chr8	56758264	56758265	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34122	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr4.111161059.+	chr4	111161059	111161060	+	0	NA	Intergenic	AluY|SINE|Alu	-41239	NM_024090	79071	Hs.652828	NM_001130721	ENSG00000170522	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
chr16.33293933.-	chr16	33293933	33293934	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4769	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr12.53535530.-	chr12	53535530	53535531	-	0	NA	Intergenic	AluY|SINE|Alu	-22747	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr20.60624003.+	chr20	60624003	60624004	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16863	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr2.239058240.-	chr2	239058240	239058241	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10877	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr5.92346245.+	chr5	92346245	92346246	+	0	NA	Intergenic	AluSq2|SINE|Alu	560254	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr7.36403678.-	chr7	36403678	36403679	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	"intron (NM_001100425, intron 2 of 6)"	-3104	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr3.49047715.+	chr3	49047715	49047716	+	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	3078	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr14.50838464.+	chr14	50838464	50838465	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24153	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr2.232202237.-	chr2	232202237	232202238	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25182	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr7.5355887.+	chr7	5355887	5355888	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	33326	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr10.134999719.+	chr10	134999719	134999720	+	0	NA	"exon (NM_152643, exon 6 of 30)"	"exon (NM_152643, exon 6 of 30)"	25748	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr19.6237120.+	chr19	6237120	6237121	+	0	NA	"intron (NM_005934, intron 3 of 11)"	"intron (NM_005934, intron 3 of 11)"	42839	NM_005934	4298	Hs.10095	NM_005934		MLLT1	ENL|LTG19|YEATS1	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1"	protein-coding
chr1.203045000.+	chr1	203045000	203045001	+	0	NA	"intron (NM_015053, intron 16 of 16)"	CpG	10166	NM_002479	4656	Hs.2830	NM_002479	ENSG00000122180	MYOG	MYF4|bHLHc3|myf-4	myogenin (myogenic factor 4)	protein-coding
chr6.3127008.-	chr6	3127008	3127009	-	0	NA	"intron (NR_026648, intron 3 of 8)"	AluSx|SINE|Alu	-8082	NM_004332	670	Hs.10136	NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase-like (serine hydrolase)	protein-coding
chr16.1127311.-	chr16	1127311	1127312	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-1420	NR_027242	146336	Hs.250557	NR_027242	ENSG00000261713	SSTR5-AS1	-	SSTR5 antisense RNA 1	miscRNA
chr3.36421953.+	chr3	36421953	36421954	+	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	-144	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr11.73486303.+	chr11	73486303	73486304	+	0	NA	Intergenic	SVA_C|Other|Other	-12614	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr3.164119697.+	chr3	164119697	164119698	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676586	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr8.120878251.-	chr8	120878251	120878252	-	0	NA	Intergenic	AluSx1|SINE|Alu	7649	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr14.101693739.-	chr14	101693739	101693740	-	0	NA	Intergenic	Intergenic	-157491	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr22.30753790.+	chr22	30753790	30753791	+	0	NA	promoter-TSS (NM_001005409)	promoter-TSS (NM_001005409)	-877	NM_005877	10291	Hs.505597	NM_001005409	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	"splicing factor 3a, subunit 1, 120kDa"	protein-coding
chr16.28874243.+	chr16	28874243	28874244	+	0	NA	promoter-TSS (NM_001145796)	promoter-TSS (NM_001145796)	-835	NM_001145795	25970	Hs.15744	NM_001145795	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
chr10.128594941.+	chr10	128594941	128594942	+	0	NA	"intron (NM_001380, intron 1 of 51)"	CpG	918	NM_001380	1793	Hs.159195	NM_001380	ENSG00000150760	DOCK1	DOCK180|ced5	dedicator of cytokinesis 1	protein-coding
chr2.86777049.-	chr2	86777049	86777050	-	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	-13571	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr14.102577007.-	chr14	102577007	102577008	-	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	23495	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr2.228327532.-	chr2	228327532	228327533	-	0	NA	Intergenic	Intergenic	9316	NR_049888	100847081		NR_049888	ENSG00000266382	MIR5703	-	microRNA 5703	miscRNA
chr12.118812104.+	chr12	118812104	118812105	+	0	NA	Intergenic	AluSx|SINE|Alu	-1354	NM_016281	51347	Hs.644420	NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
chr4.15508556.-	chr4	15508556	15508557	-	0	NA	"intron (NM_001080522, intron 7 of 37)"	AluSx3|SINE|Alu	-37067	NM_001164720	57545	Hs.590928	NM_001080522	ENSG00000048342	CC2D2A	JBTS9|MKS6	coiled-coil and C2 domain containing 2A	protein-coding
chr19.10041262.+	chr19	10041262	10041263	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5808	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr12.132116768.+	chr12	132116768	132116769	+	0	NA	Intergenic	L1ME1|LINE|L1	-78864	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr7.104040203.+	chr7	104040203	104040204	+	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	71099	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr3.36494790.+	chr3	36494790	36494791	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72693	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr21.14753427.+	chr21	14753427	14753428	+	0	NA	Intergenic	SVA_A|Other|Other	25354	NR_036164	100423018		NR_036164	ENSG00000266211	MIR3156-3	-	microRNA 3156-3	miscRNA
chr14.90254577.+	chr14	90254577	90254578	+	0	NA	Intergenic	AluSx|SINE|Alu	166512	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr12.127898765.-	chr12	127898765	127898766	-	0	NA	Intergenic	Intergenic	467397	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr7.6453937.-	chr7	6453937	6453938	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluY|SINE|Alu	-33706	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr8.141276697.-	chr8	141276697	141276698	-	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	-191164	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr13.111268060.+	chr13	111268060	111268061	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	129	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr22.37915042.-	chr22	37915042	37915043	-	0	NA	"exon (NM_014550, exon 1 of 20)"	"exon (NM_014550, exon 1 of 20)"	-168	NM_014550	29775	Hs.57973	NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3	"caspase recruitment domain family, member 10"	protein-coding
chr2.1748274.+	chr2	1748274	1748275	+	0	NA	promoter-TSS (NM_012293)	promoter-TSS (NM_012293)	17	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr12.131127751.+	chr12	131127751	131127752	+	0	NA	Intergenic	Intergenic	-125341	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr21.47029279.+	chr21	47029279	47029280	+	0	NA	Intergenic	Intergenic	-66894	NM_194255	6573	Hs.736903	NM_001205206	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	"solute carrier family 19 (folate transporter), member 1"	protein-coding
chr1.97029349.-	chr1	97029349	97029350	-	0	NA	Intergenic	AluSp|SINE|Alu	157826	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr7.130586408.-	chr7	130586408	130586409	-	0	NA	"intron (NR_034120, intron 2 of 3)"	"intron (NR_034120, intron 2 of 3)"	-11661	NR_034120	646329	Hs.150556	NR_034120	ENSG00000226380	LOC646329	-	uncharacterized LOC646329	miscRNA
chr14.64976451.-	chr14	64976451	64976452	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5159	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chr3.8721162.+	chr3	8721162	8721163	+	0	NA	Intergenic	Intergenic	-27398	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr13.110832794.-	chr13	110832794	110832795	-	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	-126702	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chrX.132930109.-	chrX	132930109	132930110	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189564	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr3.52030325.+	chr3	52030325	52030326	+	0	NA	promoter-TSS (NM_000992)	promoter-TSS (NM_000992)	-367	NM_000992	6159	Hs.425125	NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
chr20.47088253.-	chr20	47088253	47088254	-	0	NA	Intergenic	Intergenic	-99599	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr2.38595067.+	chr2	38595067	38595068	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluSq2|SINE|Alu	9365	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr11.16894164.-	chr11	16894164	16894165	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-134016	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr7.40164645.-	chr7	40164645	40164646	-	0	NA	Intergenic	AluY|SINE|Alu	-9606	NM_138701	136647	Hs.654989	NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20	M-phase specific PLK1 interacting protein	protein-coding
chr9.135947043.+	chr9	135947043	135947044	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9678	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr2.237068267.-	chr2	237068267	237068268	-	0	NA	Intergenic	CpG	-8385	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr13.56400611.+	chr13	56400611	56400612	+	0	NA	Intergenic	AluY|SINE|Alu	652022	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr6.170055423.+	chr6	170055423	170055424	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46736	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr2.64739153.-	chr2	64739153	64739154	-	0	NA	Intergenic	SVA_F|Other|Other	12286	NM_001002243	54812	Hs.655167	NM_001002243	ENSG00000119844	AFTPH	Nbla10388	aftiphilin	protein-coding
chr3.102974055.+	chr3	102974055	102974056	+	0	NA	Intergenic	SVA_D|Other|Other	820196	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr8.142619356.+	chr8	142619356	142619357	+	0	NA	Intergenic	Intergenic	-102026	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr16.53448431.+	chr16	53448431	53448432	+	0	NA	Intergenic	AluSp|SINE|Alu	-19920	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chrX.144902904.+	chrX	144902904	144902905	+	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	38	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr11.133788123.+	chr11	133788123	133788124	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16488	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr15.93372479.+	chr15	93372479	93372480	+	0	NA	Intergenic	AluSg|SINE|Alu	33765	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr1.40330213.+	chr1	40330213	40330214	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18964	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr13.39300367.+	chr13	39300367	39300368	+	0	NA	"intron (NM_207361, intron 2 of 23)"	MER74A|LTR|ERVL	39194	NM_207361	341640	Hs.253994	NM_207361	ENSG00000150893	FREM2	-	FRAS1 related extracellular matrix protein 2	protein-coding
chr7.54614214.+	chr7	54614214	54614215	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4195	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr5.114712432.+	chr5	114712432	114712433	+	0	NA	Intergenic	AluYc3|SINE|Alu	-79974	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chrX.22158699.-	chrX	22158699	22158700	-	0	NA	"intron (NM_000444, intron 12 of 21)"	AluSz6|SINE|Alu	-32401	NR_046639	100873942	Hs.633194	NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	miscRNA
chr4.39561484.+	chr4	39561484	39561485	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32025	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr3.196619099.-	chr3	196619099	196619100	-	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	-24372	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr9.74383565.-	chr9	74383565	74383566	-	0	NA	"5' UTR (NM_001135820, exon 1 of 23)"	"5' UTR (NM_001135820, exon 1 of 23)"	-235	NM_013390	23670	Hs.494146	NM_001135820	ENSG00000135048	TMEM2	-	transmembrane protein 2	protein-coding
chr18.77244891.+	chr18	77244891	77244892	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84565	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr1.92407883.+	chr1	92407883	92407884	+	0	NA	Intergenic	AluY|SINE|Alu	-7045	NM_207189	676	Hs.482520	NM_001242805	ENSG00000137948	BRDT	BRD6|CT9	"bromodomain, testis-specific"	protein-coding
chr5.21484671.+	chr5	21484671	21484672	+	0	NA	"intron (NR_027026, intron 3 of 4)"	"intron (NR_027026, intron 3 of 4)"	25082	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr11.69189615.+	chr11	69189615	69189616	+	0	NA	Intergenic	Intergenic	127993	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr9.108210424.-	chr9	108210424	108210425	-	0	NA	promoter-TSS (NM_207647)	promoter-TSS (NM_207647)	-99	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr6.1610288.-	chr6	1610288	1610289	-	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	393	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr2.19132842.+	chr2	19132842	19132843	+	0	NA	Intergenic	AluYk4|SINE|Alu	-361996	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr8.216721.+	chr8	216721	216722	+	0	NA	Intergenic	CpG	34337	NM_001042416	169270	Hs.591388	NM_001042415	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
chr8.7414127.+	chr8	7414127	7414128	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2499	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr9.72101674.-	chr9	72101674	72101675	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157433	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chr15.90792633.+	chr15	90792633	90792634	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-131	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr1.31248144.-	chr1	31248144	31248145	-	0	NA	Intergenic	Intergenic	17461	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr2.47660751.+	chr2	47660751	47660752	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30545	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr3.45348395.-	chr3	45348395	45348396	-	0	NA	Intergenic	LTR12C|LTR|ERV1	80581	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr19.4065732.-	chr19	4065732	4065733	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1084	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr2.235844078.-	chr2	235844078	235844079	-	0	NA	Intergenic	Intergenic	16550	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr19.53096863.+	chr19	53096863	53096864	+	0	NA	Intergenic	SVA_D|Other|Other	-3074	NR_023311	7696	Hs.373648	NM_003438		ZNF137P	ZNF137|pHZ-30	"zinc finger protein 137, pseudogene"	pseudo
chr11.118978703.-	chr11	118978703	118978704	-	0	NA	"exon (NM_014807, exon 1 of 14)"	"exon (NM_014807, exon 1 of 14)"	-610	NM_014807	9854	Hs.26899	NM_014807		C2CD2L	TMEM24	C2CD2-like	protein-coding
chrX.133565018.-	chrX	133565018	133565019	-	0	NA	Intergenic	AluSp|SINE|Alu	29157	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr18.70912404.+	chr18	70912404	70912405	+	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	19329	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr16.68233573.-	chr16	68233573	68233574	-	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	-36563	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr15.44719843.+	chr15	44719843	44719844	+	0	NA	"5' UTR (NM_016396, exon 1 of 13)"	"5' UTR (NM_016396, exon 1 of 13)"	264	NM_016396	51496	Hs.497967	NM_016396	ENSG00000137770	CTDSPL2	HSPC129	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2"	protein-coding
chr9.128986134.-	chr9	128986134	128986135	-	0	NA	Intergenic	Intergenic	102989	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr21.37681325.-	chr21	37681325	37681326	-	0	NA	Intergenic	AluSx1|SINE|Alu	11162	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr17.15122387.-	chr17	15122387	15122388	-	0	NA	Intergenic	AluY|SINE|Alu	-32626	NR_039884	100616125		NR_039884		MIR4731	-	microRNA 4731	miscRNA
chr4.26862250.-	chr4	26862250	26862251	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	63	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr7.95234838.+	chr7	95234838	95234839	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8913	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr2.235307224.-	chr2	235307224	235307225	-	0	NA	Intergenic	Intergenic	-98469	NM_005737	10123	Hs.730678	NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
chr16.1123276.-	chr16	1123276	1123277	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-520	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr7.124427238.+	chr7	124427238	124427239	+	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	3626	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr2.80427909.+	chr2	80427909	80427910	+	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluSx1|SINE|Alu	103578	NM_178839	347730	Hs.591580	NM_178839	ENSG00000162951	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
chr2.85638993.+	chr2	85638993	85638994	+	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	-1173	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr8.609232.+	chr8	609232	609233	+	0	NA	Intergenic	Intergenic	71994	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr15.75744869.+	chr15	75744869	75744870	+	0	NA	promoter-TSS (NM_015477)	promoter-TSS (NM_015477)	-782	NM_001145358	25942	Hs.513039	NM_001145357	ENSG00000169375	SIN3A	-	SIN3 transcription regulator homolog A (yeast)	protein-coding
chr5.32209050.+	chr5	32209050	32209051	+	0	NA	Intergenic	SVA_F|Other|Other	-34625	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
chr14.102954965.+	chr14	102954965	102954966	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21163	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr10.64708123.+	chr10	64708123	64708124	+	0	NA	Intergenic	SVA_E|Other|Other	-129196	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr1.40330227.+	chr1	40330227	40330228	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18950	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr7.155246323.-	chr7	155246323	155246324	-	0	NA	Intergenic	Intergenic	4501	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr7.1570355.+	chr7	1570355	1570356	+	0	NA	promoter-TSS (NM_002360)	promoter-TSS (NM_002360)	-13	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr19.42777330.-	chr19	42777330	42777331	-	0	NA	Intergenic	CpG	11487	NM_015125	23152	Hs.388236	NM_015125	ENSG00000079432	CIC	-	capicua transcriptional repressor	protein-coding
chr9.11197016.-	chr9	11197016	11197017	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584293	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr9.95546665.+	chr9	95546665	95546666	+	0	NA	Intergenic	AluSq2|SINE|Alu	-19582	NM_001003800	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr6.145212746.-	chr6	145212746	145212747	-	0	NA	Intergenic	AluY|SINE|Alu	-599873	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr8.8559313.-	chr8	8559313	8559314	-	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	353	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr2.16350238.-	chr2	16350238	16350239	-	0	NA	Intergenic	Intergenic	268393	NR_026766	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|NCYM|NYCM	MYCN opposite strand/antisense RNA	miscRNA
chr16.632108.-	chr16	632108	632109	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7249	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr18.55315513.+	chr18	55315513	55315514	+	0	NA	"3' UTR (NM_005603, exon 28 of 28)"	"3' UTR (NM_005603, exon 28 of 28)"	17979	NM_001242804	100505549	Hs.660645	NM_001242804		LOC100505549	-	uncharacterized LOC100505549	protein-coding
chrX.49682930.+	chrX	49682930	49682931	+	0	NA	Intergenic	AluSz|SINE|Alu	-4295	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr6.53738359.-	chr6	53738359	53738360	-	0	NA	"intron (NM_018214, intron 2 of 13)"	AluY|SINE|Alu	-78581	NM_018214	55227	Hs.732252	NM_025168	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
chr4.85886928.+	chr4	85886928	85886929	+	0	NA	"intron (NM_014991, intron 1 of 67)"	CpG	616	NM_014991	23001	Hs.726339	NM_014991	ENSG00000163625	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
chr20.46601784.-	chr20	46601784	46601785	-	0	NA	Intergenic	Intergenic	186424	NM_198596	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr6.4780637.+	chr6	4780637	4780638	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3957	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr13.21894224.-	chr13	21894224	21894225	-	0	NA	"intron (NR_046461, intron 2 of 4)"	CpG	-21960	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr9.6559777.+	chr9	6559777	6559778	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85915	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr11.113666048.-	chr11	113666048	113666049	-	0	NA	Intergenic	AluSx|SINE|Alu	-15530	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr1.46889680.-	chr1	46889680	46889681	-	0	NA	Intergenic	Intergenic	9819	NR_045483	729041	Hs.170205	NR_045483	ENSG00000232022	LOC729041	-	fatty acid amide hydrolase pseudogene	pseudo
chr3.173023514.-	chr3	173023514	173023515	-	0	NA	Intergenic	AluYc|SINE|Alu	92730	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr16.656884.-	chr16	656884	656885	-	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	-16711	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr8.123636935.+	chr8	123636935	123636936	+	0	NA	Intergenic	AluSx|SINE|Alu	-156966	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr22.17443312.+	chr22	17443312	17443313	+	0	NA	"3' UTR (NM_001037814, exon 10 of 10)"	"3' UTR (NM_001037814, exon 10 of 10)"	45800	NM_001037814	128954	Hs.434113	NM_001037814	ENSG00000215568	GAB4	-	"GRB2-associated binding protein family, member 4"	protein-coding
chr1.150745396.+	chr1	150745396	150745397	+	0	NA	Intergenic	AluY|SINE|Alu	-6963	NM_001199739	1520	Hs.181301	NM_001199739	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
chr8.609223.+	chr8	609223	609224	+	0	NA	Intergenic	Intergenic	72003	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr10.102802464.-	chr10	102802464	102802465	-	0	NA	Intergenic	Intergenic	-11468	NM_030971	81855	Hs.283844	NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3	sideroflexin 3	protein-coding
chr8.126408534.-	chr8	126408534	126408535	-	0	NA	Intergenic	AluSx1|SINE|Alu	34029	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr1.937261.+	chr1	937261	937262	+	0	NA	Intergenic	CpG-24	-1709	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr17.4926601.-	chr17	4926601	4926602	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12126	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr3.15147902.+	chr3	15147902	15147903	+	0	NA	Intergenic	AluSz|SINE|Alu	-7247	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr6.158438929.+	chr6	158438929	158438930	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	849	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr22.49181546.-	chr22	49181546	49181547	-	0	NA	Intergenic	AluSx1|SINE|Alu	-5439	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	miscRNA
chr16.70888407.+	chr16	70888407	70888408	+	0	NA	"intron (NM_001270974, intron 73 of 85)"	AluSq2|SINE|Alu	-53346	NM_018052	55697	Hs.445061	NM_018052	ENSG00000103043	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
chr1.97228905.+	chr1	97228905	97228906	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41730	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr22.24563070.+	chr22	24563070	24563071	+	0	NA	"exon (NM_001201429, exon 31 of 36)"	"exon (NM_001201429, exon 31 of 36)"	-14374	NM_019601	56241	Hs.131819	NM_019601	ENSG00000099994	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
chr7.33168802.+	chr7	33168802	33168803	+	0	NA	promoter-TSS (NM_198428)	promoter-TSS (NM_198428)	-350	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr2.236491443.+	chr2	236491443	236491444	+	0	NA	"intron (NM_001037131, intron 1 of 17)"	"intron (NM_001037131, intron 1 of 17)"	88710	NM_001244888	116987	Hs.435039	NM_001037131	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1"	protein-coding
chr10.134351689.-	chr10	134351689	134351690	-	0	NA	"intron (NM_005539, intron 1 of 15)"	"intron (NM_005539, intron 1 of 15)"	-336	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr19.18180431.+	chr19	18180431	18180432	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17266	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr11.77751913.+	chr11	77751913	77751914	+	0	NA	"intron (NM_001203262, intron 1 of 2)"	AluSq2|SINE|Alu	-17593	NM_023930	65987	Hs.709780	NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerisation domain containing 14	protein-coding
chr17.5148706.-	chr17	5148706	5148707	-	0	NA	Intergenic	AluSq|SINE|Alu	10551	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr12.42538143.-	chr12	42538143	42538144	-	0	NA	"intron (NM_173601, intron 1 of 7)"	CpG	-530	NM_001099650	283464	Hs.259347	NM_001099650	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
chr11.17160928.-	chr11	17160928	17160929	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30426	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr19.6307822.-	chr19	6307822	6307823	-	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	-25818	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr6.55774914.+	chr6	55774914	55774915	+	0	NA	Intergenic	SVA_D|Other|Other	-34539	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr1.33896388.+	chr1	33896388	33896389	+	0	NA	Intergenic	CpG	-41844	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
chr20.62172857.-	chr20	62172857	62172858	-	0	NA	"exon (NM_080823, exon 6 of 8)"	"exon (NM_080823, exon 6 of 8)"	4134	NM_001256358	5753	Hs.51133	NM_001256358	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
chr22.17719076.+	chr22	17719076	17719077	+	0	NA	Intergenic	AluSg|SINE|Alu	-28297	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chrM.2869.-	chrM	2869	2870	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.101924987.+	chr2	101924987	101924988	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	191	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr20.13660611.+	chr20	13660611	13660612	+	0	NA	Intergenic	AluY|SINE|Alu	-41028	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr11.133763866.+	chr11	133763866	133763867	+	0	NA	Intergenic	AluY|SINE|Alu	4610	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr22.41715337.-	chr22	41715337	41715338	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17830	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr12.91811115.-	chr12	91811115	91811116	-	0	NA	Intergenic	AluY|SINE|Alu	234309	NM_001920	1634	Hs.156316	NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
chrX.152909500.-	chrX	152909500	152909501	-	0	NA	"intron (NM_001395, intron 1 of 3)"	"intron (NM_001395, intron 1 of 3)"	-1603	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr11.67351063.-	chr11	67351063	67351064	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	3	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr7.1147386.-	chr7	1147386	1147387	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	-19663	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr1.161393136.+	chr1	161393136	161393137	+	0	NA	Intergenic	SVA_D|Other|Other	-55463	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chr2.70410769.+	chr2	70410769	70410770	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSc8|SINE|Alu	7382	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr18.77244841.-	chr18	77244841	77244842	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84515	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr8.67618020.-	chr8	67618020	67618021	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6633	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr21.47403580.-	chr21	47403580	47403581	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1917	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr1.161168312.+	chr1	161168312	161168313	+	0	NA	promoter-TSS (NM_004550)	promoter-TSS (NM_004550)	533	NM_005099	9507	Hs.211604	NM_005099	ENSG00000158859	ADAMTS4	ADAMTS-2|ADAMTS-4|ADMP-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 4"	protein-coding
chr10.135031529.+	chr10	135031529	135031530	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12249	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr2.101245785.-	chr2	101245785	101245786	-	0	NA	Intergenic	Intergenic	-66367	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr6.150285785.-	chr6	150285785	150285786	-	0	NA	"intron (NM_025218, intron 1 of 4)"	CpG	-642	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr17.65335485.-	chr17	65335485	65335486	-	0	NA	Intergenic	AluSx|SINE|Alu	-27236	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr9.133430123.+	chr9	133430123	133430124	+	0	NA	Intergenic	Intergenic	24758	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	miscRNA
chr20.1317932.-	chr20	1317932	1317933	-	0	NA	"intron (NR_040047, intron 1 of 2)"	MIR|SINE|MIR	8053	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr14.90540092.+	chr14	90540092	90540093	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSx|SINE|Alu	11984	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr17.80454943.+	chr17	80454943	80454944	+	0	NA	Intergenic	CpG	-22651	NM_004514	3607	Hs.591140	NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
chr2.236403925.-	chr2	236403925	236403926	-	0	NA	"intron (NM_001037131, intron 1 of 17)"	CpG	-1192	NM_001244888	116987	Hs.435039	NM_001037131	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1"	protein-coding
chr2.10733461.+	chr2	10733461	10733462	+	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	96652	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr7.3828919.-	chr7	3828919	3828920	-	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	340398	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr9.719256.+	chr9	719256	719257	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12450	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr8.42722581.+	chr8	42722581	42722582	+	0	NA	"intron (NM_001160224, intron 4 of 5)"	AluSp|SINE|Alu	-24107	NM_199003	55145	Hs.7432	NM_018105	ENSG00000131931	THAP1	DYT6	"THAP domain containing, apoptosis associated protein 1"	protein-coding
chr2.105472110.-	chr2	105472110	105472111	-	0	NA	"exon (NM_006236, exon 1 of 1)"	"exon (NM_006236, exon 1 of 1)"	-141	NM_006236	5455	Hs.673855	NM_006236		POU3F3	BRN1|OTF8	POU class 3 homeobox 3	protein-coding
chr21.11107107.-	chr21	11107107	11107108	-	0	NA	Intergenic	CpG	8170	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr17.26336775.-	chr17	26336775	26336776	-	0	NA	Intergenic	AluSz|SINE|Alu	32913	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr12.56394754.-	chr12	56394754	56394755	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3711	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr1.937273.+	chr1	937273	937274	+	0	NA	Intergenic	CpG-24	-1721	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr10.134216488.+	chr10	134216488	134216489	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5786	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr21.44335518.+	chr21	44335518	44335519	+	0	NA	Intergenic	AluY|SINE|Alu	22140	NM_021075	4731	Hs.473937	NM_001001503	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	"NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa"	protein-coding
chr13.23713151.-	chr13	23713151	23713152	-	0	NA	Intergenic	AluY|SINE|Alu	41909	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr14.104730995.-	chr14	104730995	104730996	-	0	NA	Intergenic	Intergenic	-125935	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
chr12.118663889.-	chr12	118663889	118663890	-	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	-90019	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr10.135008745.-	chr10	135008745	135008746	-	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	-34774	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr17.4156439.-	chr17	4156439	4156440	-	0	NA	"intron (NR_047571, intron 1 of 23)"	AluSz|SINE|Alu	-10703	NM_001257999	51479	Hs.696087	NM_001257999	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
chr19.18180408.+	chr19	18180408	18180409	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17289	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr6.90432377.+	chr6	90432377	90432378	+	0	NA	"intron (NM_014611, intron 40 of 101)"	AluSq2|SINE|Alu	-83903	NM_020466	57226	Hs.177275	NM_020466	ENSG00000083099	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
chr12.62886288.+	chr12	62886288	62886289	+	0	NA	"intron (NM_015026, intron 2 of 34)"	AluYb8|SINE|Alu	25691	NM_015026	23041	Hs.389378	NM_015026	ENSG00000061987	MON2	-	MON2 homolog (S. cerevisiae)	protein-coding
chr16.4065729.-	chr16	4065729	4065730	-	0	NA	"intron (NM_001116, intron 2 of 10)"	AluSx1|SINE|Alu	-100457	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr5.178032025.-	chr5	178032025	178032026	-	0	NA	"intron (NM_020666, intron 11 of 12)"	AluSx1|SINE|Alu	14469	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr2.207270708.+	chr2	207270708	207270709	+	0	NA	Intergenic	AluY|SINE|Alu	-37660	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr12.34191970.+	chr12	34191970	34191971	+	0	NA	Intergenic	AluSp|SINE|Alu	16754	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr12.58120513.-	chr12	58120513	58120514	-	0	NA	"exon (NM_001122772, exon 19 of 19)"	"exon (NM_001122772, exon 19 of 19)"	-490	NR_027032	100130776	Hs.656080	NR_027032	ENSG00000255737	LOC100130776	-	uncharacterized LOC100130776	miscRNA
chr5.39649185.+	chr5	39649185	39649186	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223850	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr18.11959825.-	chr18	11959825	11959826	-	0	NA	Intergenic	SVA_D|Other|Other	21602	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr13.45945078.-	chr13	45945078	45945079	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29598	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr7.91257056.+	chr7	91257056	91257057	+	0	NA	Intergenic	LTR12C|LTR|ERV1	252960	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr9.12352936.+	chr9	12352936	12352937	+	0	NA	Intergenic	Intergenic	-340450	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr2.131551976.-	chr2	131551976	131551977	-	0	NA	Intergenic	AluY|SINE|Alu	-38112	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr2.71205675.+	chr2	71205675	71205676	+	0	NA	promoter-TSS (NM_001115116)	promoter-TSS (NM_001115116)	100	NM_024933	79998	Hs.512744	NM_001115116	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
chr2.218802977.+	chr2	218802977	218802978	+	0	NA	"intron (NM_022648, intron 1 of 32)"	"intron (NM_022648, intron 1 of 32)"	5819	NM_022648	7145	Hs.471381	NM_022648	ENSG00000079308	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|TNS	tensin 1	protein-coding
chr12.46411950.-	chr12	46411950	46411951	-	0	NA	Intergenic	LTR12C|LTR|ERV1	27549	NM_004719	9169	Hs.743951	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
chrX.13062309.+	chrX	13062309	13062310	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	608	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr3.172180149.-	chr3	172180149	172180150	-	0	NA	Intergenic	AluY|SINE|Alu	13903	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr22.18251506.-	chr22	18251506	18251507	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	4481	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr7.4723652.-	chr7	4723652	4723653	-	0	NA	"intron (NM_001037165, intron 1 of 8)"	"intron (NM_001037165, intron 1 of 8)"	-1722	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr12.121734483.-	chr12	121734483	121734484	-	0	NA	promoter-TSS (NM_001270485)	promoter-TSS (NM_001270485)	-73	NM_172226	10645	Hs.297343	NM_001270485	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	"calcium/calmodulin-dependent protein kinase kinase 2, beta"	protein-coding
chr11.33476398.-	chr11	33476398	33476399	-	0	NA	Intergenic	AluY|SINE|Alu	87479	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549-like	protein-coding
chr2.90481151.-	chr2	90481151	90481152	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1366824	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr3.122695690.-	chr3	122695690	122695691	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	709	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr18.46969453.-	chr18	46969453	46969454	-	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	-17626	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr14.106359713.-	chr14	106359713	106359714	-	0	NA	Intergenic	Intergenic	24125	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr20.5213526.-	chr20	5213526	5213527	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81489	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr17.18755429.-	chr17	18755429	18755430	-	0	NA	Intergenic	AluSp|SINE|Alu	4183	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr5.1494493.-	chr5	1494493	1494494	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29583	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr15.100514183.-	chr15	100514183	100514184	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167051	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr16.31932505.-	chr16	31932505	31932506	-	0	NA	Intergenic	AluY|SINE|Alu	-47426	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr5.176337818.+	chr5	176337818	176337819	+	0	NA	"intron (NM_001199297, intron 12 of 15)"	AluSp|SINE|Alu	-11485	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr9.107407983.+	chr9	107407983	107407984	+	0	NA	Intergenic	AluSx|SINE|Alu	-27498	NM_001001956	286362	Hs.553682	NM_001001956	ENSG00000136839	OR13C9	OR37L|OR9-13	"olfactory receptor, family 13, subfamily C, member 9"	protein-coding
chr2.239058227.+	chr2	239058227	239058228	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10864	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr12.663880.+	chr12	663880	663881	+	0	NA	"intron (NM_173593, intron 14 of 19)"	AluY|SINE|Alu	94337	NM_173593	283358	Hs.504416	NM_173593		B4GALNT3	-	"beta-1,4-N-acetyl-galactosaminyl transferase 3"	protein-coding
chrX.13062325.+	chrX	13062325	13062326	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	592	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chrX.153236292.-	chrX	153236292	153236293	-	0	NA	"5' UTR (NM_005334, exon 1 of 26)"	"5' UTR (NM_005334, exon 1 of 26)"	-527	NM_005334	3054	Hs.83634	NM_005334	ENSG00000172534	HCFC1	CFF|HCF-1|HCF1|HFC1|MRX3|VCAF	host cell factor C1 (VP16-accessory protein)	protein-coding
chr19.1045751.+	chr19	1045751	1045752	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5649	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr17.1226135.+	chr17	1226135	1226136	+	0	NA	Intergenic	AluSx|SINE|Alu	43178	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chrX.21676565.-	chrX	21676565	21676566	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	117	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr2.55647021.+	chr2	55647021	55647022	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	36	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr2.241622515.-	chr2	241622515	241622516	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	198	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr16.723802.+	chr16	723802	723803	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2273	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr5.2751871.-	chr5	2751871	2751872	-	0	NA	promoter-TSS (NM_178569)	promoter-TSS (NM_178569)	102	NM_001134222	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr4.42658258.+	chr4	42658258	42658259	+	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	864	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr5.693629.-	chr5	693629	693630	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	119	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr2.240530732.+	chr2	240530732	240530733	+	0	NA	Intergenic	Intergenic	-153822	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chr4.1358108.+	chr4	1358108	1358109	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	17004	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr4.26862522.-	chr4	26862522	26862523	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-209	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr6.24720937.+	chr6	24720937	24720938	+	0	NA	Intergenic	CpG	-1534	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr12.118079900.+	chr12	118079900	118079901	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280293	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr2.170666318.-	chr2	170666318	170666319	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-10996	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr16.4605665.-	chr16	4605665	4605666	-	0	NA	promoter-TSS (NM_001145011)	promoter-TSS (NM_001145011)	826	NM_001145011	342346	Hs.684212	NM_001145011	ENSG00000205832	C16orf96	-	chromosome 16 open reading frame 96	protein-coding
chr19.20713795.+	chr19	20713795	20713796	+	0	NA	Intergenic	SVA_D|Other|Other	34831	NM_001159293	100129842	Hs.515696	NM_001159293		ZNF737	ZNF102	zinc finger protein 737	protein-coding
chr16.1821697.-	chr16	1821697	1821698	-	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	-13	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr10.42385205.-	chr10	42385205	42385206	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-478288	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr17.37768993.+	chr17	37768993	37768994	+	0	NA	Intergenic	Intergenic	-4818	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr9.719251.+	chr9	719251	719252	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12445	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr17.7198727.+	chr17	7198727	7198728	+	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	-851	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr5.128197003.+	chr5	128197003	128197004	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104207	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr10.99094409.-	chr10	99094409	99094410	-	0	NA	promoter-TSS (NM_012083)	promoter-TSS (NM_012083)	-49	NM_012083	23401	Hs.140720	NM_012083	ENSG00000181274	FRAT2	-	frequently rearranged in advanced T-cell lymphomas 2	protein-coding
chr8.142657035.-	chr8	142657035	142657036	-	0	NA	Intergenic	Intergenic	139705	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr17.74707095.+	chr17	74707095	74707096	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-39	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr1.161879494.+	chr1	161879494	161879495	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114150	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr10.44870311.+	chr10	44870311	44870312	+	0	NA	"intron (NM_000609, intron 3 of 3)"	"intron (NM_000609, intron 3 of 3)"	10234	NM_000609	6387	Hs.522891	NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
chr7.4722743.-	chr7	4722743	4722744	-	0	NA	"intron (NM_001037165, intron 1 of 8)"	CpG	-813	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr3.96508637.+	chr3	96508637	96508638	+	0	NA	Intergenic	AluSq2|SINE|Alu	-24788	NM_001080448	285220	Hs.653244	NM_001080448	ENSG00000080224	EPHA6	EK12|EPA6|PRO57066	EPH receptor A6	protein-coding
chr11.65307205.-	chr11	65307205	65307206	-	0	NA	"exon (NM_001164266, exon 24 of 27)"	"exon (NM_001164266, exon 24 of 27)"	-14657	NM_001048218	57410	Hs.238839	NM_001048218	ENSG00000142186	SCYL1	GKLP|NKTL|NTKL|P105|TAPK|TEIF|TRAP	SCY1-like 1 (S. cerevisiae)	protein-coding
chr6.64246118.+	chr6	64246118	64246119	+	0	NA	Intergenic	AluSq|SINE|Alu	-35802	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr2.136403855.+	chr2	136403855	136403856	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19112	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr2.175518222.-	chr2	175518222	175518223	-	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	18915	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr3.31574024.+	chr3	31574024	31574025	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	-467	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr6.169648542.+	chr6	169648542	169648543	+	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	5595	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr19.46185061.-	chr19	46185061	46185062	-	0	NA	"exon (NM_000164, exon 14 of 14)"	"exon (NM_000164, exon 14 of 14)"	6795	NR_037512	100500845		NR_037512		MIR642B	-	microRNA 642b	miscRNA
chr13.112597818.-	chr13	112597818	112597819	-	0	NA	Intergenic	MIRc|SINE|MIR	124095	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr12.123903560.-	chr12	123903560	123903561	-	0	NA	"intron (NM_145058, intron 3 of 3)"	AluSc|SINE|Alu	-17704	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
chr8.141559349.-	chr8	141559349	141559350	-	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	-37268	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr1.24513580.-	chr1	24513580	24513581	-	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	-185	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr12.56579285.-	chr12	56579285	56579286	-	0	NA	"intron (NM_003075, intron 3 of 27)"	AluSx1|SINE|Alu	-4066	NM_139067	6601	Hs.632717	NM_001130420		SMARCC2	BAF170|CRACC2|Rsc8	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2"	protein-coding
chr17.4435105.+	chr17	4435105	4435106	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23576	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr21.27382852.-	chr21	27382852	27382853	-	0	NA	"intron (NM_001136016, intron 6 of 16)"	AluSx1|SINE|Alu	-129856	NM_001136016	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
chr3.139481334.-	chr3	139481334	139481335	-	0	NA	Intergenic	Intergenic	84449	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chrX.67548249.-	chrX	67548249	67548250	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105050	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr20.1317831.-	chr20	1317831	1317832	-	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	7952	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chrY.15683491.-	chrY	15683491	15683492	-	0	NA	Intergenic	AluYb8|SINE|Alu	90941	NR_047601	7404	Hs.115277	NM_001258249	ENSG00000183878	UTY	UTY1	"ubiquitously transcribed tetratricopeptide repeat containing, Y-linked"	protein-coding
chr3.164852008.-	chr3	164852008	164852009	-	0	NA	Intergenic	AluY|SINE|Alu	55725	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr19.33224958.+	chr19	33224958	33224959	+	0	NA	"intron (NM_001110822, intron 2 of 12)"	AluY|SINE|Alu	14279	NM_001110822	91646	Hs.729739	NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
chr1.240947677.-	chr1	240947677	240947678	-	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	172215	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr19.2597657.-	chr19	2597657	2597658	-	0	NA	"intron (NM_052847, intron 2 of 4)"	AluY|SINE|Alu	-105089	NM_052847	2788	Hs.735237	NM_052847	ENSG00000176533	GNG7	-	"guanine nucleotide binding protein (G protein), gamma 7"	protein-coding
chr10.135192253.+	chr10	135192253	135192254	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-488	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr22.17443282.+	chr22	17443282	17443283	+	0	NA	"3' UTR (NM_001037814, exon 10 of 10)"	"3' UTR (NM_001037814, exon 10 of 10)"	45830	NM_001037814	128954	Hs.434113	NM_001037814	ENSG00000215568	GAB4	-	"GRB2-associated binding protein family, member 4"	protein-coding
chr5.17207843.+	chr5	17207843	17207844	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9089	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr2.42782481.+	chr2	42782481	42782482	+	0	NA	Intergenic	AluSp|SINE|Alu	-13190	NM_020744	57504	Hs.743512	NM_020744	ENSG00000057935	MTA3	-	"metastasis associated 1 family, member 3"	protein-coding
chr22.24237288.+	chr22	24237288	24237289	+	0	NA	"exon (NM_002415, exon 3 of 3)"	"exon (NM_002415, exon 3 of 3)"	723	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chrX.37894860.-	chrX	37894860	37894861	-	0	NA	"intron (NM_138780, intron 2 of 16)"	"intron (NM_138780, intron 2 of 16)"	-2073	NM_001163334	94122	Hs.662334	NM_001163334	ENSG00000147041	SYTL5	slp5	synaptotagmin-like 5	protein-coding
chr3.195498042.-	chr3	195498042	195498043	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40802	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr16.81849456.-	chr16	81849456	81849457	-	0	NA	"intron (NM_002661, intron 2 of 32)"	AluSz|SINE|Alu	-36557	NM_002661	5336	Hs.413111	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3	"phospholipase C, gamma 2 (phosphatidylinositol-specific)"	protein-coding
chr10.12344454.-	chr10	12344454	12344455	-	0	NA	Intergenic	AluSc8|SINE|Alu	47129	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr19.58250037.+	chr19	58250037	58250038	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8127	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr15.65477193.+	chr15	65477193	65477194	+	0	NA	"intron (NM_006660, intron 1 of 13)"	CpG	370	NM_006660	10845	Hs.113823	NM_006660		CLPX	-	ClpX caseinolytic peptidase X homolog (E. coli)	protein-coding
chr22.17719102.+	chr22	17719102	17719103	+	0	NA	Intergenic	AluSg|SINE|Alu	-28323	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr4.86025610.-	chr4	86025610	86025611	-	0	NA	Intergenic	AluY|SINE|Alu	-137639	NR_015359	404201	Hs.720920	NR_015359	ENSG00000180769	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	miscRNA
chr18.2377775.-	chr18	2377775	2377776	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193714	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr7.99765899.-	chr7	99765899	99765900	-	0	NA	"intron (NM_024637, intron 1 of 3)"	"intron (NM_024637, intron 1 of 3)"	-474	NM_024637	79690	Hs.44856	NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
chr5.171395333.+	chr5	171395333	171395334	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38544	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr19.38836203.-	chr19	38836203	38836204	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9760	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr18.9386380.-	chr18	9386380	9386381	-	0	NA	"intron (NM_020648, intron 3 of 4)"	AluSx1|SINE|Alu	-51615	NM_020648	57045	Hs.514685	NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation homolog 1 (Drosophila)	protein-coding
chr19.30963826.-	chr19	30963826	30963827	-	0	NA	"intron (NM_014717, intron 2 of 4)"	AluSx|SINE|Alu	-100498	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
chr15.76553924.-	chr15	76553924	76553925	-	0	NA	"intron (NM_000126, intron 9 of 11)"	"intron (NM_000126, intron 9 of 11)"	1431	NR_028510	7302	Hs.684881	NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
chr4.1400156.+	chr4	1400156	1400157	+	0	NA	Intergenic	CpG	14816	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr1.226350789.+	chr1	226350789	226350790	+	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	23634	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr6.151672057.+	chr6	151672057	151672058	+	0	NA	"exon (NM_144497, exon 2 of 3)"	"exon (NM_144497, exon 2 of 3)"	25391	NM_144497	9590	Hs.371240	NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
chr8.144513092.-	chr8	144513092	144513093	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	490	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr17.60886523.-	chr17	60886523	60886524	-	0	NA	promoter-TSS (NM_152598)	promoter-TSS (NM_152598)	818	NM_152598	162333	Hs.665663	NM_001100875	ENSG00000173838	Mar-10	MARCH-X|RNF190	"membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase"	protein-coding
chr7.63023273.-	chr7	63023273	63023274	-	0	NA	Intergenic	Intergenic	58195	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr10.118500988.-	chr10	118500988	118500989	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1097	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr14.64299479.+	chr14	64299479	64299480	+	0	NA	Intergenic	AluJb|SINE|Alu	-20204	NM_015180	23224	Hs.525392	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	"spectrin repeat containing, nuclear envelope 2"	protein-coding
chr10.65193041.-	chr10	65193041	65193042	-	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSp|SINE|Alu	31948	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr22.38166137.+	chr22	38166137	38166138	+	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	23896	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr2.70199647.+	chr2	70199647	70199648	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10250	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr5.115177888.+	chr5	115177888	115177889	+	0	NA	promoter-TSS (NM_004707)	promoter-TSS (NM_004707)	269	NM_001284	1176	Hs.740519	NM_001002924		AP3S1	CLAPS3|Sigma3A	"adaptor-related protein complex 3, sigma 1 subunit"	protein-coding
chr14.101679082.+	chr14	101679082	101679083	+	0	NA	Intergenic	AluSx1|SINE|Alu	142834	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr19.55681192.-	chr19	55681192	55681193	-	0	NA	Intergenic	AluSp|SINE|Alu	3102	NM_001256716	352909	Hs.351582	NM_001256714	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	"dynein, axonemal, assembly factor 3"	protein-coding
chr20.32757610.-	chr20	32757610	32757611	-	0	NA	Intergenic	AluSc8|SINE|Alu	57525	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr14.55349966.+	chr14	55349966	55349967	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-5055	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr5.114712356.+	chr5	114712356	114712357	+	0	NA	Intergenic	MIRb|SINE|MIR	-79898	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr17.11800360.+	chr17	11800360	11800361	+	0	NA	"intron (NM_004662, intron 5 of 14)"	AluSq2|SINE|Alu	14141	NM_004662	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	"dynein, axonemal, heavy chain 9"	protein-coding
chr7.158462275.+	chr7	158462275	158462276	+	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	35245	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr7.56888208.+	chr7	56888208	56888209	+	0	NA	Intergenic	Intergenic	61631	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr17.61567878.+	chr17	61567878	61567879	+	0	NA	"intron (NM_152830, intron 6 of 13)"	MIR|SINE|MIR	5700	NM_152830	1636	Hs.298469	NM_000789	ENSG00000159640	ACE	ACE1|CD143|DCP|DCP1|ICH|MVCD3	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding
chr20.13271268.+	chr20	13271268	13271269	+	0	NA	"intron (NM_080826, intron 4 of 5)"	AluY|SINE|Alu	-50934	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	miscRNA
chr6.142795174.-	chr6	142795174	142795175	-	0	NA	Intergenic	AluSc|SINE|Alu	-163799	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr19.13976738.-	chr19	13976738	13976739	-	0	NA	Intergenic	CpG	8775	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	miscRNA
chr12.113494350.+	chr12	113494350	113494351	+	0	NA	Intergenic	Intergenic	-1312	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr7.1798930.-	chr7	1798930	1798931	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50132	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr12.117737166.-	chr12	117737166	117737167	-	0	NA	"intron (NM_000620, intron 3 of 28)"	AluY|SINE|Alu	-5691	NM_001204213	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr5.17207838.+	chr5	17207838	17207839	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9094	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr9.6807795.-	chr9	6807795	6807796	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50154	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr6.21897121.-	chr6	21897121	21897122	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230446	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr2.182548974.+	chr2	182548974	182548975	+	0	NA	Intergenic	CpG	-3582	NM_002500	4760	Hs.709709	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
chr8.143373449.-	chr8	143373449	143373450	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93732	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr2.20550828.-	chr2	20550828	20550829	-	0	NA	Intergenic	CpG	23684	NM_015317	23369	Hs.467824	NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio homolog 2 (Drosophila)	protein-coding
chr2.1166123.-	chr2	1166123	1166124	-	0	NA	"intron (NM_018968, intron 7 of 16)"	"intron (NM_018968, intron 7 of 16)"	-219569	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chrX.122910320.-	chrX	122910320	122910321	-	0	NA	Intergenic	AluJo|SINE|Alu	43416	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr11.100596580.+	chr11	100596580	100596581	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38173	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr17.45349556.+	chr17	45349556	45349557	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18348	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr2.223163287.+	chr2	223163287	223163288	+	0	NA	"exon (NM_181460, exon 1 of 9)"	"exon (NM_181460, exon 1 of 9)"	421	NM_153038	151278	Hs.350729	NM_153038	ENSG00000163081	CCDC140	-	coiled-coil domain containing 140	protein-coding
chr2.90481138.-	chr2	90481138	90481139	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1366837	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr6.158438962.+	chr6	158438962	158438963	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	882	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr14.94606706.+	chr14	94606706	94606707	+	0	NA	Intergenic	Intergenic	-10749	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chr8.146052557.-	chr8	146052557	146052558	-	0	NA	promoter-TSS (NM_003416)	promoter-TSS (NM_003416)	346	NM_003416	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
chr5.3764265.+	chr5	3764265	3764266	+	0	NA	Intergenic	Intergenic	168097	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr1.1574890.-	chr1	1574890	1574891	-	0	NA	"intron (NM_033486, intron 11 of 19)"	"intron (NM_033486, intron 11 of 19)"	-6731	NR_002946	8511	Hs.671760	NR_002946	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
chr20.13910570.-	chr20	13910570	13910571	-	0	NA	"intron (NR_073207, intron 3 of 18)"	AluSx|SINE|Alu	-60695	NR_073206	80343	Hs.590879	NM_025229	ENSG00000101251	SEL1L2	C20orf50	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding
chr5.78890185.-	chr5	78890185	78890186	-	0	NA	Intergenic	AluY|SINE|Alu	18058	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr17.21825595.+	chr17	21825595	21825596	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	225	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr17.77746700.+	chr17	77746700	77746701	+	0	NA	Intergenic	Intergenic	-5277	NM_005189	84733	Hs.368410	NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox homolog 2	protein-coding
chr3.149374869.-	chr3	149374869	149374870	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-943	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr15.41539497.-	chr15	41539497	41539498	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16060	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr1.156704147.+	chr1	156704147	156704148	+	0	NA	"exon (NM_015997, exon 6 of 8)"	"exon (NM_015997, exon 6 of 8)"	5884	NM_001142560	51093	Hs.512597	NM_001142560	ENSG00000143303	RRNAD1	C1orf66|CGI-41	ribosomal RNA adenine dimethylase domain containing 1	protein-coding
chr19.18180380.-	chr19	18180380	18180381	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17317	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr22.40851512.-	chr22	40851512	40851513	-	0	NA	"intron (NM_020831, intron 4 of 14)"	AluY|SINE|Alu	-84917	NM_015705	27352	Hs.474914	NM_015705	ENSG00000100359	SGSM3	MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5	small G protein signaling modulator 3	protein-coding
chr1.110881048.+	chr1	110881048	110881049	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	745	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr12.32064883.+	chr12	32064883	32064884	+	0	NA	Intergenic	AluY|SINE|Alu	-47470	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr22.46303186.-	chr22	46303186	46303187	-	0	NA	Intergenic	Intergenic	-69822	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr1.229761494.+	chr1	229761494	229761495	+	0	NA	promoter-TSS (NM_014777)	promoter-TSS (NM_014777)	300	NM_001025247	27097	Hs.270621	NM_001025247	ENSG00000135801	TAF5L	PAF65B	"TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa"	protein-coding
chr21.34922686.-	chr21	34922686	34922687	-	0	NA	"exon (NM_138927, exon 3 of 12)"	"exon (NM_138927, exon 3 of 12)"	-7336	NM_032195	6651	Hs.517262	NM_032195	ENSG00000159140	SON	BASS1|C21orf50|DBP-5|NREBP|SON3	SON DNA binding protein	protein-coding
chr11.66292642.+	chr11	66292642	66292643	+	0	NA	"intron (NM_024649, intron 11 of 16)"	AluY|SINE|Alu	14523	NM_024649	582	Hs.502915	NM_024649	ENSG00000174483	BBS1	BBS2L2	Bardet-Biedl syndrome 1	protein-coding
chr13.108435252.+	chr13	108435252	108435253	+	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	84208	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr2.239047338.-	chr2	239047338	239047339	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	25	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr7.1474500.+	chr7	1474500	1474501	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24609	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr11.1266508.+	chr11	1266508	1266509	+	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	22213	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr6.76458797.-	chr6	76458797	76458798	-	0	NA	promoter-TSS (NM_004999)	promoter-TSS (NM_004999)	112	NM_004999	4646	Hs.149387	NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
chr6.160985682.-	chr6	160985682	160985683	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53526	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr2.241696760.-	chr2	241696760	241696761	-	0	NA	"exon (NM_001244008, exon 27 of 49)"	"exon (NM_001244008, exon 27 of 49)"	-40469	NM_004321	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr19.58310322.-	chr19	58310322	58310323	-	0	NA	Intergenic	AluY|SINE|Alu	-15959	NM_024762	79818	Hs.560727	NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
chr4.108641320.-	chr4	108641320	108641321	-	0	NA	promoter-TSS (NM_005443)	promoter-TSS (NM_005443)	-99	NM_005443	9061	Hs.368610	NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
chr22.46303158.+	chr22	46303158	46303159	+	0	NA	Intergenic	Intergenic	69850	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr12.85194701.+	chr12	85194701	85194702	+	0	NA	Intergenic	AluY|SINE|Alu	111907	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr6.33806258.+	chr6	33806258	33806259	+	0	NA	Intergenic	Intergenic	-34465	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr5.1085893.-	chr5	1085893	1085894	-	0	NA	"intron (NM_006598, intron 6 of 23)"	"intron (NM_006598, intron 6 of 23)"	22804	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr5.140744397.-	chr5	140744397	140744398	-	0	NA	"exon (NM_018918, exon 1 of 4)"	"exon (NM_018918, exon 1 of 4)"	-499	NM_018918	56110	Hs.368160	NM_018918	ENSG00000253485	PCDHGA5	CDH-GAMMA-A5|ME3|PCDH-GAMMA-A5	"protocadherin gamma subfamily A, 5"	protein-coding
chr1.80516591.+	chr1	80516591	80516592	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-1044096	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr5.693631.-	chr5	693631	693632	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	121	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr5.78890174.+	chr5	78890174	78890175	+	0	NA	Intergenic	AluY|SINE|Alu	-18069	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr2.220283371.-	chr2	220283371	220283372	-	0	NA	"exon (NM_001927, exon 1 of 9)"	"exon (NM_001927, exon 1 of 9)"	-272	NM_001927	1674	Hs.594952	NM_001927	ENSG00000175084	DES	CSM1|CSM2	desmin	protein-coding
chr8.139118627.-	chr8	139118627	139118628	-	0	NA	Intergenic	AluSc|SINE|Alu	-390438	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	"family with sequence similarity 135, member B"	protein-coding
chr20.36192764.+	chr20	36192764	36192765	+	0	NA	Intergenic	Intergenic	-36431	NM_006698	10904	Hs.472651	NM_001167820	ENSG00000166619	BLCAP	BC10	bladder cancer associated protein	protein-coding
chr17.78559359.-	chr17	78559359	78559360	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40734	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr3.149374870.-	chr3	149374870	149374871	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-942	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr9.138663340.+	chr9	138663340	138663341	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69309	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr12.118812078.+	chr12	118812078	118812079	+	0	NA	Intergenic	AluSx|SINE|Alu	-1328	NM_016281	51347	Hs.644420	NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
chr15.78859501.+	chr15	78859501	78859502	+	0	NA	"intron (NM_000745, intron 1 of 5)"	AluY|SINE|Alu	1639	NM_000745	1138	Hs.719767	NM_000745	ENSG00000169684	CHRNA5	LNCR2	"cholinergic receptor, nicotinic, alpha 5 (neuronal)"	protein-coding
chr16.31932487.+	chr16	31932487	31932488	+	0	NA	Intergenic	AluY|SINE|Alu	47408	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr15.68628176.+	chr15	68628176	68628177	+	0	NA	"exon (NM_001004439, exon 12 of 30)"	"exon (NM_001004439, exon 12 of 30)"	58035	NM_015322	10116	Hs.362733	NM_015322		FEM1B	F1A-ALPHA|FIAA	fem-1 homolog b (C. elegans)	protein-coding
chr5.128197051.+	chr5	128197051	128197052	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104159	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr19.6337899.-	chr19	6337899	6337900	-	0	NA	Intergenic	AluY|SINE|Alu	4259	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr12.106477564.+	chr12	106477564	106477565	+	0	NA	"intron (NM_014840, intron 4 of 6)"	"intron (NM_014840, intron 4 of 6)"	56247	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr2.240187901.-	chr2	240187901	240187902	-	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	39256	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr6.57912684.+	chr6	57912684	57912685	+	0	NA	Intergenic	SVA_B|Other|Other	375040	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr5.14460426.+	chr5	14460426	14460427	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121465	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr5.693679.-	chr5	693679	693680	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	169	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr17.18755394.-	chr17	18755394	18755395	-	0	NA	Intergenic	AluSp|SINE|Alu	4218	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr17.46633125.+	chr17	46633125	46633126	+	0	NA	"intron (NM_002146, intron 1 of 3)"	"intron (NM_002146, intron 1 of 3)"	-10732	NM_002145	3212	Hs.514289	NM_002145		HOXB2	HOX2|HOX2H|Hox-2.8|K8	homeobox B2	protein-coding
chr20.45162725.-	chr20	45162725	45162726	-	0	NA	Intergenic	MER52C|LTR|ERV1	-16488	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
chr7.82072649.-	chr7	82072649	82072650	-	0	NA	"intron (NM_000722, intron 1 of 38)"	CpG	-382	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A	"calcium channel, voltage-dependent, alpha 2/delta subunit 1"	protein-coding
chrX.152916372.-	chrX	152916372	152916373	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8475	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr12.117605432.+	chr12	117605432	117605433	+	0	NA	"intron (NM_015002, intron 7 of 11)"	AluY|SINE|Alu	22868	NM_033624	23014	Hs.740376	NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
chr9.93000205.-	chr9	93000205	93000206	-	0	NA	Intergenic	AluY|SINE|Alu	196424	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chrX.42145038.-	chrX	42145038	42145039	-	0	NA	Intergenic	SVA_D|Other|Other	362751	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr2.21484605.-	chr2	21484605	21484606	-	0	NA	Intergenic	Intergenic	217660	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr6.34760148.-	chr6	34760148	34760149	-	0	NA	"intron (NM_017754, intron 1 of 20)"	CpG	-354	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr6.80035300.-	chr6	80035300	80035301	-	0	NA	Intergenic	L1PA4|LINE|L1	90845	NM_004242	9324	Hs.77558	NM_001201362	ENSG00000118418	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chr7.55379446.+	chr7	55379446	55379447	+	0	NA	Intergenic	SVA_D|Other|Other	-53695	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr9.129539934.+	chr9	129539934	129539935	+	0	NA	Intergenic	Intergenic	-27351	NM_014007	23099	Hs.355581	NM_001135776	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
chr7.56109475.+	chr7	56109475	56109476	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9793	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr19.46277569.-	chr19	46277569	46277570	-	0	NA	"intron (NM_001081563, intron 8 of 13)"	AluY|SINE|Alu	5072	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
chr8.104851153.+	chr8	104851153	104851154	+	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	19737	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr2.113642123.+	chr2	113642123	113642124	+	0	NA	Intergenic	AluJb|SINE|Alu	-28425	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr3.36421972.-	chr3	36421972	36421973	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	125	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr2.239047341.-	chr2	239047341	239047342	-	0	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	22	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr9.87981548.-	chr9	87981548	87981549	-	0	NA	Intergenic	AluYc|SINE|Alu	-375396	NM_015239	23287	Hs.719980	NM_015239	ENSG00000135049	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
chr2.119939742.-	chr2	119939742	119939743	-	0	NA	Intergenic	Intergenic	23271	NM_182528	165257	Hs.433493	NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	"complement component 1, q subcomponent-like 2"	protein-coding
chrX.152916358.-	chrX	152916358	152916359	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8461	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chrX.48703099.-	chrX	48703099	48703100	-	0	NA	Intergenic	AluSx|SINE|Alu	9063	NM_013271	27344	Hs.522640	NM_013271	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
chrX.48871415.-	chrX	48871415	48871416	-	0	NA	Intergenic	AluY|SINE|Alu	12740	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr12.3383081.-	chr12	3383081	3383082	-	0	NA	"intron (NM_006675, intron 3 of 8)"	"intron (NM_006675, intron 3 of 8)"	107434	NM_001256536	56341	Hs.504530	NM_001256537	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
chr12.105389744.-	chr12	105389744	105389745	-	0	NA	Intergenic	AluY|SINE|Alu	-9646	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr1.31727309.-	chr1	31727309	31727310	-	0	NA	Intergenic	AluY|SINE|Alu	14575	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr2.223163364.-	chr2	223163364	223163365	-	0	NA	"5' UTR (NM_181460, exon 1 of 9)"	"5' UTR (NM_181460, exon 1 of 9)"	-351	NM_181457	5077	Hs.42146	NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|WS1|WS3	paired box 3	protein-coding
chr1.9517594.+	chr1	9517594	9517595	+	0	NA	Intergenic	AluJb|SINE|Alu	-81934	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chrX.15372362.-	chrX	15372362	15372363	-	0	NA	"intron (NR_037859, intron 12 of 14)"	AluY|SINE|Alu	18686	NR_033836	5277	Hs.137154	NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|PIG-A	"phosphatidylinositol glycan anchor biosynthesis, class A"	protein-coding
chr7.961914.-	chr7	961914	961915	-	0	NA	"intron (NM_006869, intron 3 of 10)"	"intron (NM_006869, intron 3 of 10)"	-32375	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr19.50194285.+	chr19	50194285	50194286	+	0	NA	promoter-TSS (NM_001199753)	promoter-TSS (NM_001199753)	-80	NM_001199752	126129	Hs.112195	NM_001136052	ENSG00000169169	CPT1C	CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC	carnitine palmitoyltransferase 1C	protein-coding
chr8.104645094.+	chr8	104645094	104645095	+	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	132118	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr21.33279983.+	chr21	33279983	33279984	+	0	NA	"intron (NM_014586, intron 1 of 10)"	L1MB2|LINE|L1	34355	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr19.3607650.+	chr19	3607650	3607651	+	0	NA	promoter-TSS (NM_001060)	promoter-TSS (NM_001060)	405	NR_038865	404665	Hs.719726	NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	miscRNA
chr11.2213944.+	chr11	2213944	2213945	+	0	NA	Intergenic	Intergenic	19651	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr2.131450720.-	chr2	131450720	131450721	-	0	NA	Intergenic	Intergenic	-13097	NR_023391	100132708	Hs.734862	NM_032248	ENSG00000214081	CYP4F30P	C2orf14	"cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene"	pseudo
chrX.15372372.-	chrX	15372372	15372373	-	0	NA	"intron (NR_037859, intron 12 of 14)"	AluY|SINE|Alu	18696	NR_033836	5277	Hs.137154	NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|PIG-A	"phosphatidylinositol glycan anchor biosynthesis, class A"	protein-coding
chr1.2498966.+	chr1	2498966	2498967	+	0	NA	Intergenic	Intergenic	-10516	NR_037844	100133445	Hs.602652	NR_037844		LOC100133445	-	uncharacterized LOC100133445	miscRNA
chr5.28928029.-	chr5	28928029	28928030	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1052	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr2.10916513.-	chr2	10916513	10916514	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36447	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr13.112726534.+	chr13	112726534	112726535	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4621	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr16.15528768.+	chr16	15528768	15528769	+	0	NA	"intron (NM_033201, intron 1 of 5)"	CpG	443	NM_033201	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
chr1.2587538.-	chr1	2587538	2587539	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	23057	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr19.4395761.-	chr19	4395761	4395762	-	0	NA	"intron (NM_003025, intron 1 of 9)"	AluSx3|SINE|Alu	-4654	NM_001199944	6455	Hs.97616	NM_001199943	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3-domain GRB2-like 1	protein-coding
chr6.4780569.+	chr6	4780569	4780570	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3889	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr1.63157873.+	chr1	63157873	63157874	+	0	NA	Intergenic	AluY|SINE|Alu	-3834	NM_033407	85440	Hs.406156	NM_001271999	ENSG00000116641	DOCK7	ZIR2	dedicator of cytokinesis 7	protein-coding
chr11.68968271.+	chr11	68968271	68968272	+	0	NA	Intergenic	Intergenic	-93351	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr3.42642389.+	chr3	42642389	42642390	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	183	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr12.2162999.+	chr12	2162999	2163000	+	0	NA	"intron (NM_001129846, intron 1 of 45)"	"intron (NM_001129846, intron 1 of 45)"	583	NM_001129834	775	Hs.118262	NM_000719		CACNA1C	CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS	"calcium channel, voltage-dependent, L type, alpha 1C subunit"	protein-coding
chr1.224239390.+	chr1	224239390	224239391	+	0	NA	Intergenic	AluSq2|SINE|Alu	-62399	NR_049764	23219	Hs.64691	NM_001136115	ENSG00000143756	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
chr1.85513835.-	chr1	85513835	85513836	-	0	NA	"intron (NM_001253693, intron 1 of 11)"	CpG	-388	NM_001253693	55283	Hs.535239	NM_001253693	ENSG00000055732	MCOLN3	TRP-ML3|TRPML3	mucolipin 3	protein-coding
chrX.53125742.+	chrX	53125742	53125743	+	0	NA	Intergenic	AluJb|SINE|Alu	14200	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.2673166.+	chr9	2673166	2673167	+	0	NA	Intergenic	AluSc8|SINE|Alu	-44360	NM_133497	169522	Hs.740173	NM_133497	ENSG00000168263	KCNV2	KV11.1|Kv8.2|RCD3B	"potassium channel, subfamily V, member 2"	protein-coding
chrX.19862929.+	chrX	19862929	19862930	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42815	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr12.34191981.+	chr12	34191981	34191982	+	0	NA	Intergenic	AluSp|SINE|Alu	16765	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr10.28821898.-	chr10	28821898	28821899	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-476	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr3.77641898.+	chr3	77641898	77641899	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494735	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr7.66607913.+	chr7	66607913	66607914	+	0	NA	"intron (NM_018264, intron 13 of 15)"	AluSq2|SINE|Alu	-28529	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	miscRNA
chr8.91618528.-	chr8	91618528	91618529	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-39605	NM_001146273	169200	Hs.737401	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
chr21.43109582.-	chr21	43109582	43109583	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10120	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr16.11953944.-	chr16	11953944	11953945	-	0	NA	Intergenic	AluSx1|SINE|Alu	8502	NM_015659	26156	Hs.401842	NM_015659	ENSG00000171490	RSL1D1	CSIG|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
chr1.109995562.+	chr1	109995562	109995563	+	0	NA	Intergenic	AluY|SINE|Alu	-13538	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr12.80366244.+	chr12	80366244	80366245	+	0	NA	Intergenic	AluSp|SINE|Alu	-37009	NM_001244990	4659	Hs.49582	NM_001143885	ENSG00000058272	PPP1R12A	M130|MBS|MYPT1	"protein phosphatase 1, regulatory subunit 12A"	protein-coding
chr20.33005205.-	chr20	33005205	33005206	-	0	NA	"intron (NM_001257137, intron 7 of 25)"	"intron (NM_001257137, intron 7 of 25)"	48925	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr22.49447888.+	chr22	49447888	49447889	+	0	NA	Intergenic	CpG	185306	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr20.13660630.-	chr20	13660630	13660631	-	0	NA	Intergenic	AluY|SINE|Alu	41047	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr1.227982856.+	chr1	227982856	227982857	+	0	NA	Intergenic	Intergenic	-20562	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr16.65732364.+	chr16	65732364	65732365	+	0	NA	Intergenic	AluY|SINE|Alu	-122161	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LOC283867	-	uncharacterized LOC283867	miscRNA
chrX.99100677.-	chrX	99100677	99100678	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94164	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr2.240401997.-	chr2	240401997	240401998	-	0	NA	Intergenic	Intergenic	79354	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr17.810073.-	chr17	810073	810074	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42722	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr7.91257059.-	chr7	91257059	91257060	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252957	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr19.2433383.+	chr19	2433383	2433384	+	0	NA	"intron (NM_032737, intron 8 of 11)"	CpG	-5508	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr3.39120284.-	chr3	39120284	39120285	-	0	NA	"intron (NM_020839, intron 10 of 18)"	AluYa5|SINE|Alu	-26777	NM_020839	57599	Hs.109778	NM_020839	ENSG00000114742	WDR48	P80|UAF1	WD repeat domain 48	protein-coding
chr11.428430.-	chr11	428430	428431	-	0	NA	"intron (NM_001012302, intron 13 of 22)"	"intron (NM_001012302, intron 13 of 22)"	11033	NM_001135053	59307	Hs.501624	NM_001135053	ENSG00000185187	SIGIRR	TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding
chr14.50838367.+	chr14	50838367	50838368	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24250	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr19.4245385.-	chr19	4245385	4245386	-	0	NA	Intergenic	AluSx1|SINE|Alu	1726	NM_018074	55702	Hs.21811	NM_018074	ENSG00000105248	CCDC94	-	coiled-coil domain containing 94	protein-coding
chrY.9930602.+	chrY	9930602	9930603	+	0	NA	Intergenic	5S|rRNA|rRNA	182195	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr3.34527460.-	chr3	34527460	34527461	-	0	NA	Intergenic	AluSz6|SINE|Alu	-687397	NM_001162429	10015	Hs.475896	NM_001162429	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
chr5.114712385.-	chr5	114712385	114712386	-	0	NA	Intergenic	AluYc3|SINE|Alu	79927	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr19.48997222.-	chr19	48997222	48997223	-	0	NA	"exon (NM_001080434, exon 13 of 16)"	"exon (NM_001080434, exon 13 of 16)"	-19224	NM_001080434	114783	Hs.207426	NM_001080434	ENSG00000142235	LMTK3	LMR3|TYKLM3	lemur tyrosine kinase 3	protein-coding
chr19.46786026.-	chr19	46786026	46786027	-	0	NA	"intron (NR_046936, intron 3 of 3)"	AluSx1|SINE|Alu	14277	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	"hypoxia inducible factor 3, alpha subunit"	protein-coding
chr12.75694219.-	chr12	75694219	75694220	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29617	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr3.172015424.-	chr3	172015424	172015425	-	0	NA	"intron (NM_022763, intron 8 of 25)"	AluY|SINE|Alu	-150822	NM_198407	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chrX.32910771.+	chrX	32910771	32910772	+	0	NA	"intron (NM_000109, intron 2 of 78)"	AluSq2|SINE|Alu	127546	NM_004007	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr16.17658404.+	chr16	17658404	17658405	+	0	NA	Intergenic	AluJb|SINE|Alu	-93666	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr15.83365815.+	chr15	83365815	83365816	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12820	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr11.5315873.+	chr11	5315873	5315874	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7303	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr17.16010318.-	chr17	16010318	16010319	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87635	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr5.176002637.+	chr5	176002637	176002638	+	0	NA	"intron (NM_001171976, intron 10 of 31)"	"intron (NM_001171976, intron 10 of 31)"	26294	NM_017675	54825	Hs.4205	NM_001171976	ENSG00000074276	CDHR2	PCDH24|PCLKC	cadherin-related family member 2	protein-coding
chr16.46387545.+	chr16	46387545	46387546	+	0	NA	Intergenic	HSATII|Satellite|Satellite	215464	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr16.712049.+	chr16	712049	712050	+	0	NA	"exon (NM_145294, exon 32 of 41)"	"exon (NM_145294, exon 32 of 41)"	-6034	NM_138769	89941	Hs.513242	NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
chrX.122910258.-	chrX	122910258	122910259	-	0	NA	Intergenic	AluJo|SINE|Alu	43354	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr17.41856045.-	chr17	41856045	41856046	-	0	NA	"intron (NM_004090, intron 1 of 2)"	CpG	-323	NM_004090	1845	Hs.181046	NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
chr4.55034913.+	chr4	55034913	55034914	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60351	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr1.33647286.+	chr1	33647286	33647287	+	0	NA	"5' UTR (NM_018207, exon 1 of 5)"	"5' UTR (NM_018207, exon 1 of 5)"	385	NM_018207	55223	Hs.656006	NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
chr9.107689748.+	chr9	107689748	107689749	+	0	NA	"intron (NM_005502, intron 1 of 49)"	"intron (NM_005502, intron 1 of 49)"	779	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr5.50216202.-	chr5	50216202	50216203	-	0	NA	Intergenic	AluSg7|SINE|Alu	-253430	NM_001178056	79668	Hs.369581	NM_001178055	ENSG00000151883	PARP8	ARTD16|pART16	"poly (ADP-ribose) polymerase family, member 8"	protein-coding
chr15.101457910.+	chr15	101457910	101457911	+	0	NA	Intergenic	Intergenic	-1550	NM_024652	79705	Hs.407918	NM_024652	ENSG00000154237	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
chr16.1821684.-	chr16	1821684	1821685	-	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	-26	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr16.2479628.+	chr16	2479628	2479629	+	0	NA	"intron (NM_001761, intron 1 of 16)"	CpG	233	NM_001761	899	Hs.1973	NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1	cyclin F	protein-coding
chr12.133081828.-	chr12	133081828	133081829	-	0	NA	"intron (NM_001142641, intron 1 of 16)"	"intron (NM_001142641, intron 1 of 16)"	-14671	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr12.49163938.+	chr12	49163938	49163939	+	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	1882	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr16.82671296.+	chr16	82671296	82671297	+	0	NA	"intron (NM_001220491, intron 1 of 4)"	AluY|SINE|Alu	10897	NM_001220488	1012	Hs.661776	NM_001220488	ENSG00000140945	CDH13	CDHH|P105	"cadherin 13, H-cadherin (heart)"	protein-coding
chr1.85708427.+	chr1	85708427	85708428	+	0	NA	Intergenic	AluSc8|SINE|Alu	16928	NM_198077	148423	Hs.26226	NM_198077		C1orf52	RP11-234D19.1|gm117	chromosome 1 open reading frame 52	protein-coding
chr5.140315604.-	chr5	140315604	140315605	-	0	NA	"intron (NM_018898, intron 1 of 3)"	AluSx1|SINE|Alu	-9302	NM_018898	56135	Hs.199343	NM_018898	ENSG00000248383	PCDHAC1	PCDH-ALPHA-C1	"protocadherin alpha subfamily C, 1"	protein-coding
chr4.29104953.-	chr4	29104953	29104954	-	0	NA	Intergenic	AluSz|SINE|Alu	-283749	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	miscRNA
chr2.242529432.-	chr2	242529432	242529433	-	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	-27484	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr1.1436926.+	chr1	1436926	1436927	+	0	NA	Intergenic	AluY|SINE|Alu	-10597	NM_018188	55210	Hs.23413	NM_001170535	ENSG00000197785	ATAD3A	-	"ATPase family, AAA domain containing 3A"	protein-coding
chr18.59919496.-	chr18	59919496	59919497	-	0	NA	"intron (NM_020854, intron 11 of 28)"	AluSc|SINE|Alu	-64972	NM_020854	57614	Hs.465323	NM_020854	ENSG00000134444	KIAA1468	HsT3308|HsT885	KIAA1468	protein-coding
chr9.134449844.-	chr9	134449844	134449845	-	0	NA	Intergenic	Intergenic	43182	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr7.5610939.-	chr7	5610939	5610940	-	0	NA	Intergenic	AluSx1|SINE|Alu	21497	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr19.36426478.-	chr19	36426478	36426479	-	0	NA	Intergenic	AluSx1|SINE|Alu	1544	NM_024509	79414	Hs.143792	NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
chr4.989211.-	chr4	989211	989212	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1987	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr19.35651440.-	chr19	35651440	35651441	-	0	NA	"intron (NR_028406, intron 3 of 7)"	AluSp|SINE|Alu	-5595	NM_001164605	53827	Hs.333418	NM_001164605	ENSG00000089327	FXYD5	DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
chrX.7012510.+	chrX	7012510	7012511	+	0	NA	"intron (NM_001178136, intron 2 of 3)"	AluY|SINE|Alu	-53391	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr16.50142564.-	chr16	50142564	50142565	-	0	NA	Intergenic	AluSz6|SINE|Alu	-42683	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr15.63229242.+	chr15	63229242	63229243	+	0	NA	Intergenic	AluSp|SINE|Alu	-105596	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr18.2938286.-	chr18	2938286	2938287	-	0	NA	"intron (NM_014646, intron 6 of 19)"	AluSx1|SINE|Alu	-8335	NR_026659	727896	Hs.673126	NR_026659		LOC727896	-	cysteine and histidine-rich domain (CHORD) containing 1 pseudogene	pseudo
chr17.57868976.+	chr17	57868976	57868977	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	-49651	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr5.130576892.-	chr5	130576892	130576893	-	0	NA	Intergenic	AluY|SINE|Alu	22810	NM_020240	56990	Hs.713870	NM_001038702	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
chr1.3803998.-	chr1	3803998	3803999	-	0	NA	Intergenic	AluY|SINE|Alu	-12859	NM_207356	339448	Hs.103939	NM_207356	ENSG00000198912	C1orf174	RP13-531C17.2	chromosome 1 open reading frame 174	protein-coding
chr5.179383859.+	chr5	179383859	179383860	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-49003	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr10.65213768.+	chr10	65213768	65213769	+	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSx|SINE|Alu	-11221	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr4.1356977.+	chr4	1356977	1356978	+	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	15873	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr8.95668734.+	chr8	95668734	95668735	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15370	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr3.104745267.+	chr3	104745267	104745268	+	0	NA	Intergenic	AluY|SINE|Alu	-340290	NM_001243283	214	Hs.740441	NM_001243280	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
chr7.63225701.+	chr7	63225701	63225702	+	0	NA	Intergenic	Intergenic	144233	NR_036270	100422848		NR_036270	ENSG00000265214	MIR4283-2	-	microRNA 4283-2	miscRNA
chr15.63892659.-	chr15	63892659	63892660	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-367	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chrX.63045993.+	chrX	63045993	63045994	+	0	NA	Intergenic	SVA_B|Other|Other	-40026	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468	microRNA 1468	miscRNA
chr4.185174137.-	chr4	185174137	185174138	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35023	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr16.30810955.+	chr16	30810955	30810956	+	0	NA	Intergenic	AluSx|SINE|Alu	-12432	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr12.58059372.-	chr12	58059372	58059373	-	0	NA	Intergenic	SVA_A|Other|Other	28366	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr20.18441246.-	chr20	18441246	18441247	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6583	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr2.120775583.-	chr2	120775583	120775584	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4798	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr18.77627528.-	chr18	77627528	77627529	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3860	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr19.47627936.-	chr19	47627936	47627937	-	0	NA	Intergenic	AluY|SINE|Alu	6144	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr6.33500278.-	chr6	33500278	33500279	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47792	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr8.101661656.+	chr8	101661656	101661657	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	237	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr7.330754.+	chr7	330754	330755	+	0	NA	"exon (NM_001195127, exon 2 of 3)"	"exon (NM_001195127, exon 2 of 3)"	618	NM_001195127	100288524	Hs.702860	NM_001195127		LOC100288524	-	forkhead box L1-like	protein-coding
chr17.73615798.+	chr17	73615798	73615799	+	0	NA	"non-coding (NR_003587, exon 44 of 61)"	"non-coding (NR_003587, exon 44 of 61)"	-13716	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr3.185305604.+	chr3	185305604	185305605	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1573	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr5.45596288.+	chr5	45596288	45596289	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99932	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr7.26294445.-	chr7	26294445	26294446	-	0	NA	Intergenic	AluSx1|SINE|Alu	37070	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr16.619904.-	chr16	619904	619905	-	0	NA	promoter-TSS (NM_148920)	promoter-TSS (NM_148920)	64	NM_148920	9091	Hs.741878	NM_004204	ENSG00000007541	PIGQ	GPI1|c407A10.1	"phosphatidylinositol glycan anchor biosynthesis, class Q"	protein-coding
chr22.49833770.+	chr22	49833770	49833771	+	0	NA	Intergenic	AluSx|SINE|Alu	217420	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr4.88257208.-	chr4	88257208	88257209	-	0	NA	TTS (NM_016245)	TTS (NM_016245)	13152	NM_178135	345275	Hs.284414	NM_001136230	ENSG00000170509	HSD17B13	NIIL497|SCDR9|SDR16C3	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding
chr20.61448650.+	chr20	61448650	61448651	+	0	NA	"intron (NM_001853, intron 1 of 31)"	CpG	236	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chr9.139780627.-	chr9	139780627	139780628	-	0	NA	promoter-TSS (NM_021138)	promoter-TSS (NM_021138)	338	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr17.3317630.-	chr17	3317630	3317631	-	0	NA	Intergenic	AluSc8|SINE|Alu	6232	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr5.128197014.+	chr5	128197014	128197015	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104196	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr16.1176227.+	chr16	1176227	1176228	+	0	NA	Intergenic	Intergenic	-27014	NM_021098	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr10.126464504.-	chr10	126464504	126464505	-	0	NA	"intron (NM_212554, intron 3 of 6)"	AluY|SINE|Alu	-15935	NM_212554	399818	Hs.741365	NM_212554		METTL10	C10orf138|Em:AC068896.3	methyltransferase like 10	protein-coding
chr2.220430155.+	chr2	220430155	220430156	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6113	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr3.15147884.-	chr3	15147884	15147885	-	0	NA	Intergenic	AluSz|SINE|Alu	7229	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr2.48010472.+	chr2	48010472	48010473	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	251	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chrX.125299939.-	chrX	125299939	125299940	-	0	NA	"5' UTR (NM_001013628, exon 1 of 1)"	"5' UTR (NM_001013628, exon 1 of 1)"	-141	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
chr16.86716302.+	chr16	86716302	86716303	+	0	NA	Intergenic	Intergenic	104187	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr11.67145777.+	chr11	67145777	67145778	+	0	NA	"intron (NR_024469, intron 2 of 3)"	AluY|SINE|Alu	-4129	NM_001166212	23529	Hs.502977	NM_001166212	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin-like cytokine factor 1	protein-coding
chr6.114067456.-	chr6	114067456	114067457	-	0	NA	Intergenic	AluY|SINE|Alu	111071	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr12.106606501.-	chr12	106606501	106606502	-	0	NA	Intergenic	L1PA7|LINE|L1	-35212	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr17.40316814.+	chr17	40316814	40316815	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9752	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr2.233477526.+	chr2	233477526	233477527	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6759	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr14.24838005.-	chr14	24838005	24838006	-	0	NA	promoter-TSS (NM_001198966)	promoter-TSS (NM_001198966)	297	NM_001198966	4776	Hs.77810	NM_001136022	ENSG00000100968	NFATC4	NF-ATc4|NFAT3	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4"	protein-coding
chr9.139513542.-	chr9	139513542	139513543	-	0	NA	Intergenic	Intergenic	39766	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr20.57162811.-	chr20	57162811	57162812	-	0	NA	"intron (NR_034147, intron 6 of 6)"	"intron (NR_034147, intron 6 of 6)"	63498	NR_037943	8675	Hs.307913	NM_001001433	ENSG00000124222	STX16	SYN16	syntaxin 16	protein-coding
chr14.107211185.+	chr14	107211185	107211186	+	0	NA	Intergenic	Intergenic	272730	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	miscRNA
chr16.60255832.+	chr16	60255832	60255833	+	0	NA	Intergenic	AluSc8|SINE|Alu	-466737	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chrX.42145032.-	chrX	42145032	42145033	-	0	NA	Intergenic	SVA_D|Other|Other	362745	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr22.31302132.+	chr22	31302132	31302133	+	0	NA	"intron (NM_030758, intron 13 of 13)"	CpG-17726	-16163	NR_026920	150291	Hs.592202	NM_153044	ENSG00000235989	MORC2-AS1	C22orf27|NCRNA00325	MORC2 antisense RNA 1	miscRNA
chr18.41408435.-	chr18	41408435	41408436	-	0	NA	Intergenic	AluSx3|SINE|Alu	550820	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr14.106023756.+	chr14	106023756	106023757	+	0	NA	Intergenic	AluSx1|SINE|Alu	30803	NM_025268	80757	Hs.157527	NM_025268	ENSG00000184986	TMEM121	hole	transmembrane protein 121	protein-coding
chr17.43255897.-	chr17	43255897	43255898	-	0	NA	Intergenic	AluY|SINE|Alu	-17633	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr7.5355888.-	chr7	5355888	5355889	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33327	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr22.19705630.+	chr22	19705630	19705631	+	0	NA	promoter-TSS (NM_001009939)	promoter-TSS (NM_001009939)	-328	NM_001009939	5413	Hs.731401	NM_001009939	ENSG00000184702	Sep-05	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1	septin 5	protein-coding
chr7.139762741.+	chr7	139762741	139762742	+	0	NA	"5' UTR (NM_022750, exon 1 of 12)"	"5' UTR (NM_022750, exon 1 of 12)"	780	NM_022750	64761	Hs.12646	NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	"poly (ADP-ribose) polymerase family, member 12"	protein-coding
chr21.35774212.+	chr21	35774212	35774213	+	0	NA	Intergenic	AluSc8|SINE|Alu	26463	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr2.6908203.+	chr2	6908203	6908204	+	0	NA	"intron (NR_038369, intron 1 of 5)"	"intron (NR_038369, intron 1 of 5)"	2239	NR_038369	400941	Hs.446195	NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	miscRNA
chr6.158439010.-	chr6	158439010	158439011	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-930	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr19.2984216.+	chr19	2984216	2984217	+	0	NA	"intron (NM_024760, intron 4 of 15)"	"intron (NM_024760, intron 4 of 15)"	6680	NM_001143986	79816	Hs.334507	NM_001143986	ENSG00000104953	TLE6	GRG6	"transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)"	protein-coding
chr3.88595875.-	chr3	88595875	88595876	-	0	NA	Intergenic	AluSc8|SINE|Alu	396859	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr15.83365843.-	chr15	83365843	83365844	-	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	-12792	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr6.168395068.-	chr6	168395068	168395069	-	0	NA	Intergenic	AluSx|SINE|Alu	17449	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chrX.23796167.+	chrX	23796167	23796168	+	0	NA	Intergenic	AluSx|SINE|Alu	-5108	NM_002970	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr15.41613111.-	chr15	41613111	41613112	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11708	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr22.19747126.-	chr22	19747126	19747127	-	0	NA	"5' UTR (NM_005992, exon 2 of 10)"	"5' UTR (NM_005992, exon 2 of 10)"	-2900	NM_005992	6899	Hs.173984	NM_005992	ENSG00000184058	TBX1	CAFS|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCFS	T-box 1	protein-coding
chrX.53111606.-	chrX	53111606	53111607	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-64	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr17.61934455.+	chr17	61934455	61934456	+	0	NA	promoter-TSS (NR_002947)	promoter-TSS (NR_002947)	79	NR_002947	146771	Hs.629177	NR_002947	ENSG00000240280	TCAM1P	TCAM1	"testicular cell adhesion molecule 1, pseudogene"	pseudo
chr5.137550341.+	chr5	137550341	137550342	+	0	NA	Intergenic	AluY|SINE|Alu	-1309	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr14.23702007.+	chr14	23702007	23702008	+	0	NA	Intergenic	SVA_C|Other|Other	-49138	NM_012244	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	"solute carrier family 7 (amino acid transporter light chain, L system), member 8"	protein-coding
chr8.3500989.-	chr8	3500989	3500990	-	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	-1351339	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr2.101925007.-	chr2	101925007	101925008	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-171	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr22.46936385.+	chr22	46936385	46936386	+	0	NA	Intergenic	AluSx|SINE|Alu	-3318	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chr2.115328236.+	chr2	115328236	115328237	+	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	109056	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr16.33393298.-	chr16	33393298	33393299	-	0	NA	Intergenic	AluSx1|SINE|Alu	94596	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr6.170055452.+	chr6	170055452	170055453	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46707	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr5.1038037.+	chr5	1038037	1038038	+	0	NA	"exon (NM_033120, exon 10 of 10)"	"exon (NM_033120, exon 10 of 10)"	25052	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chr1.93443969.+	chr1	93443969	93443970	+	0	NA	Intergenic	AluY|SINE|Alu	-16890	NM_001252270	388650	Hs.180946	NM_001006605	ENSG00000154511	FAM69A	-	"family with sequence similarity 69, member A"	protein-coding
chr7.139162650.+	chr7	139162650	139162651	+	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	5807	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr11.130241753.+	chr11	130241753	130241754	+	0	NA	Intergenic	AluSc8|SINE|Alu	56786	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr15.90792663.+	chr15	90792663	90792664	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-101	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr8.95668728.+	chr8	95668728	95668729	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15364	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr14.23517049.-	chr14	23517049	23517050	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5673	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr22.18251663.-	chr22	18251663	18251664	-	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluSx1|SINE|Alu	4638	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr14.83280566.-	chr14	83280566	83280567	-	0	NA	Intergenic	SVA_D|Other|Other	1280361	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr7.130418525.+	chr7	130418525	130418526	+	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	363	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr9.86597343.-	chr9	86597343	86597344	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1706	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr5.176292796.+	chr5	176292796	176292797	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33537	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr9.140715910.-	chr9	140715910	140715911	-	0	NA	"intron (NM_024757, intron 25 of 26)"	AluJr|SINE|Alu	16961	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	miscRNA
chr16.89117867.+	chr16	89117867	89117868	+	0	NA	Intergenic	Intergenic	-42350	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr7.12736893.+	chr7	12736893	12736894	+	0	NA	Intergenic	AluSg|SINE|Alu	9982	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chrX.103014795.-	chrX	103014795	103014796	-	0	NA	Intergenic	AluY|SINE|Alu	16644	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr4.166248569.+	chr4	166248569	166248570	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-249	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr9.90472379.-	chr9	90472379	90472380	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1592	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chr10.120515367.+	chr10	120515367	120515368	+	0	NA	promoter-TSS (NM_153810)	promoter-TSS (NM_153810)	-609	NM_153810	143384	Hs.420024	NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	"CDK2-associated, cullin domain 1"	protein-coding
chr12.133026842.-	chr12	133026842	133026843	-	0	NA	Intergenic	Intergenic	40315	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr6.151187759.+	chr6	151187759	151187760	+	0	NA	"intron (NM_001242768, intron 1 of 27)"	CpG	290	NM_001242768	25902	Hs.591343	NM_001242767	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
chr13.72731949.-	chr13	72731949	72731950	-	0	NA	Intergenic	AluY|SINE|Alu	290619	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr2.4004708.-	chr2	4004708	4004709	-	0	NA	TTS (NR_037881)	TTS (NR_037881)	-16914	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr12.122667614.-	chr12	122667614	122667615	-	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	53	NM_001098519	254050	Hs.374856	NM_001098519	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
chr19.12904508.+	chr19	12904508	12904509	+	0	NA	TTS (NM_002229)	TTS (NM_002229)	2198	NM_002229	3726	Hs.25292	NM_002229	ENSG00000171223	JUNB	AP-1	jun B proto-oncogene	protein-coding
chr17.16290759.-	chr17	16290759	16290760	-	0	NA	Intergenic	AluSq2|SINE|Alu	-6392	NM_018955	7314	Hs.741549	NM_018955		UBB	RPS27A|UBA52|UBC	ubiquitin B	protein-coding
chr3.46709791.+	chr3	46709791	46709792	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9108	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr9.116102486.-	chr9	116102486	116102487	-	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	-134	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr6.2233004.-	chr6	2233004	2233005	-	0	NA	"intron (NM_001500, intron 1 of 10)"	"intron (NM_001500, intron 1 of 10)"	-12864	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr18.77543638.+	chr18	77543638	77543639	+	0	NA	Intergenic	AluY|SINE|Alu	-80030	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr20.31977065.+	chr20	31977065	31977066	+	0	NA	"intron (NM_016082, intron 5 of 13)"	SVA_C|Other|Other	12272	NM_016082	51654	Hs.435952	NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CDK5RAP1.3|CDK5RAP1.4|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
chr7.158284958.+	chr7	158284958	158284959	+	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	40547	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr4.77662436.+	chr4	77662436	77662437	+	0	NA	"exon (NM_020859, exon 5 of 11)"	"exon (NM_020859, exon 5 of 11)"	156566	NM_001029870	345079	Hs.257292	NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
chr3.126260561.+	chr3	126260561	126260562	+	0	NA	"intron (NM_152889, intron 2 of 2)"	CpG	17197	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr5.158420139.-	chr5	158420139	158420140	-	0	NA	"intron (NM_024007, intron 6 of 15)"	AluSz|SINE|Alu	-106649	NM_024007	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
chr20.52362418.-	chr20	52362418	52362419	-	0	NA	Intergenic	AluSx|SINE|Alu	-129830	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
chr5.170687180.+	chr5	170687180	170687181	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49108	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr21.47838758.-	chr21	47838758	47838759	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40104	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr4.42658286.-	chr4	42658286	42658287	-	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	-836	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr2.136760787.-	chr2	136760787	136760788	-	0	NA	Intergenic	AluJb|SINE|Alu	17565	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr17.7201008.-	chr17	7201008	7201009	-	0	NA	Intergenic	AluY|SINE|Alu	3132	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr4.48016942.+	chr4	48016942	48016943	+	0	NA	Intergenic	AluY|SINE|Alu	-1849	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr10.45240306.-	chr10	45240306	45240307	-	0	NA	Intergenic	AluSx1|SINE|Alu	166458	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr3.37052326.+	chr3	37052326	37052327	+	0	NA	"intron (NM_001258271, intron 6 of 16)"	AluSx|SINE|Alu	17058	NM_001167618	4292	Hs.195364	NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|hMLH1	"mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)"	protein-coding
chr9.107726467.-	chr9	107726467	107726468	-	0	NA	Intergenic	AluSx1|SINE|Alu	35940	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr9.131639088.+	chr9	131639088	131639089	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5266	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr17.70637570.-	chr17	70637570	70637571	-	0	NA	promoter-TSS (NR_033876)	promoter-TSS (NR_033876)	959	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	miscRNA
chr2.133055854.+	chr2	133055854	133055855	+	0	NA	Intergenic	AluY|SINE|Alu	-40312	NR_027020	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B-like	pseudo
chr6.141000372.-	chr6	141000372	141000373	-	0	NA	Intergenic	AluY|SINE|Alu	4579	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr5.132161309.-	chr5	132161309	132161310	-	0	NA	"exon (NM_133456, exon 1 of 7)"	"exon (NM_133456, exon 1 of 7)"	-693	NM_133456	134549	Hs.519574	NM_001172700	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
chr20.62586828.-	chr20	62586828	62586829	-	0	NA	"non-coding (NR_027287, exon 1 of 2)"	"non-coding (NR_027287, exon 1 of 2)"	-972	NM_017859	54963	Hs.504998	NM_001193379	ENSG00000198276	UCKL1	UCK1-LIKE|UCK1L|URKL1	uridine-cytidine kinase 1-like 1	protein-coding
chr16.89034200.+	chr16	89034200	89034201	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9304	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr16.53091255.+	chr16	53091255	53091256	+	0	NA	"intron (NM_025134, intron 1 of 38)"	AluJr|SINE|Alu	2310	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr16.77246836.+	chr16	77246836	77246837	+	0	NA	"3' UTR (NM_001129979, exon 11 of 11)"	"3' UTR (NM_001129979, exon 11 of 11)"	13487	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr9.139119898.-	chr9	139119898	139119899	-	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	-17789	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr10.65774993.+	chr10	65774993	65774994	+	0	NA	Intergenic	AluSg4|SINE|Alu	493870	NM_001001330	221035	Hs.499833	NM_001001330	ENSG00000165476	REEP3	C10orf74	receptor accessory protein 3	protein-coding
chr7.936462.-	chr7	936462	936463	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20271	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr17.78977996.+	chr17	78977996	78977997	+	0	NA	Intergenic	CpG	12355	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr2.108084958.+	chr2	108084958	108084959	+	0	NA	Intergenic	LTR12C|LTR|ERV1	357625	NR_024439	729121	Hs.386155	XR_159390	ENSG00000230651	LOC729121	-	uncharacterized LOC729121	miscRNA
chr7.36501600.+	chr7	36501600	36501601	+	0	NA	Intergenic	AluSg|SINE|Alu	-71866	NM_001100425	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr13.110832774.+	chr13	110832774	110832775	+	0	NA	"intron (NM_001845, intron 29 of 51)"	"intron (NM_001845, intron 29 of 51)"	126722	NM_001845	1282	Hs.17441	NM_001845	ENSG00000187498	COL4A1	HANAC|ICH|POREN1|arresten	"collagen, type IV, alpha 1"	protein-coding
chr3.192348640.-	chr3	192348640	192348641	-	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	-96748	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr8.68046988.+	chr8	68046988	68046989	+	0	NA	"intron (NM_024790, intron 14 of 28)"	AluY|SINE|Alu	70385	NM_024790	79848	Hs.370147	NM_001077204	ENSG00000104218	CSPP1	CSPP	centrosome and spindle pole associated protein 1	protein-coding
chr19.18180449.-	chr19	18180449	18180450	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17248	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr3.14349498.+	chr3	14349498	14349499	+	0	NA	Intergenic	Intergenic	-94608	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr11.62551837.+	chr11	62551837	62551838	+	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	-3037	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr1.53335611.-	chr1	53335611	53335612	-	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	-27428	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr20.55444892.+	chr20	55444892	55444893	+	0	NA	Intergenic	Intergenic	240534	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr20.35203701.+	chr20	35203701	35203702	+	0	NA	"intron (NM_001199535, intron 1 of 4)"	"intron (NM_001199535, intron 1 of 4)"	744	NM_001199515	60436	Hs.632264	NM_001199513	ENSG00000118707	TGIF2	-	TGFB-induced factor homeobox 2	protein-coding
chr13.88401637.+	chr13	88401637	88401638	+	0	NA	Intergenic	AluY|SINE|Alu	76767	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr17.80236961.+	chr17	80236961	80236962	+	0	NA	Intergenic	Intergenic	-5367	NM_001893	1453	Hs.631725	NM_001893	ENSG00000141551	CSNK1D	CKIdelta|HCKID	"casein kinase 1, delta"	protein-coding
chr5.63521643.+	chr5	63521643	63521644	+	0	NA	"intron (NM_001113561, intron 5 of 7)"	SVA_A|Other|Other	59972	NM_178532	285671	Hs.657843	NM_001113561	ENSG00000164197	RNF180	-	ring finger protein 180	protein-coding
chr1.1861787.+	chr1	1861787	1861788	+	0	NA	Intergenic	Intergenic	-11047	NM_178545	339456	Hs.123423	NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
chr5.1770122.-	chr5	1770122	1770123	-	0	NA	Intergenic	L1MB5|LINE|L1	-29834	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr13.114932217.+	chr13	114932217	114932218	+	0	NA	Intergenic	Intergenic	-34122	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr3.192348484.+	chr3	192348484	192348485	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96904	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr16.1959158.+	chr16	1959158	1959159	+	0	NA	Intergenic	Intergenic	9073	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr2.43254216.+	chr2	43254216	43254217	+	0	NA	Intergenic	Intergenic	199529	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr3.16159916.+	chr3	16159916	16159917	+	0	NA	Intergenic	AluSx|SINE|Alu	-56268	NM_054110	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNT13|GALNT7|GALNTL2|PIH5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chr12.34492674.+	chr12	34492674	34492675	+	0	NA	Intergenic	GSATII|Satellite|centr	317458	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr14.20778841.+	chr14	20778841	20778842	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4688	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr15.50450616.+	chr15	50450616	50450617	+	0	NA	Intergenic	SVA_D|Other|Other	-23777	NM_001159629	11001	Hs.11729	NM_001159629	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	"solute carrier family 27 (fatty acid transporter), member 2"	protein-coding
chr7.36403842.-	chr7	36403842	36403843	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2940	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr15.74124027.-	chr15	74124027	74124028	-	0	NA	Intergenic	Intergenic	41941	NM_153356	161514	Hs.124512	NM_153356	ENSG00000167139	TBC1D21	MgcRabGAP	"TBC1 domain family, member 21"	protein-coding
chr3.135859557.+	chr3	135859557	135859558	+	0	NA	"intron (NM_001190447, intron 12 of 12)"	AluSp|SINE|Alu	53753	NM_001145417	55167	Hs.18631	NM_001145417	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
chr17.40440294.-	chr17	40440294	40440295	-	0	NA	"5' UTR (NM_003152, exon 2 of 20)"	"5' UTR (NM_003152, exon 2 of 20)"	-729	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr6.46742372.+	chr6	46742372	46742373	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18722	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr10.8093702.-	chr10	8093702	8093703	-	0	NA	"intron (NR_024255, intron 2 of 3)"	CpG-2567	-1745	NR_024255	399717	Hs.669736	NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	miscRNA
chr9.8858144.+	chr9	8858144	8858145	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124198	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.177042983.-	chr2	177042983	177042984	-	0	NA	"intron (NR_033979, intron 1 of 2)"	CpG	10324	NM_024501	3231	Hs.83465	NM_024501	ENSG00000128645	HOXD1	HOX4|HOX4G|Hox-4.7	homeobox D1	protein-coding
chr21.46408771.+	chr21	46408771	46408772	+	0	NA	Intergenic	Intergenic	5230	NR_033840	727699	Hs.397403	NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	miscRNA
chr2.62116527.-	chr2	62116527	62116528	-	0	NA	promoter-TSS (NM_001256721)	promoter-TSS (NM_001256721)	721	NM_001256721	10575	Hs.421509	NM_001256721	ENSG00000115484	CCT4	CCT-DELTA|Cctd|SRB	"chaperonin containing TCP1, subunit 4 (delta)"	protein-coding
chr5.1586730.+	chr5	1586730	1586731	+	0	NA	"intron (NR_003263, intron 3 of 6)"	SVA_D|Other|Other	7916	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3"	pseudo
chr11.125035499.-	chr11	125035499	125035500	-	0	NA	"intron (NM_022062, intron 1 of 12)"	CpG	-940	NM_022062	63876	Hs.278564	NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
chr17.43255888.+	chr17	43255888	43255889	+	0	NA	Intergenic	AluY|SINE|Alu	17624	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr4.8629369.+	chr4	8629369	8629370	+	0	NA	Intergenic	AluSx1|SINE|Alu	34982	NM_001014448	8532	Hs.61995	NM_001014447	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
chr7.150812726.-	chr7	150812726	150812727	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28900	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr1.2027510.+	chr1	2027510	2027511	+	0	NA	"intron (NM_001242874, intron 1 of 14)"	"intron (NM_001242874, intron 1 of 14)"	-8645	NM_001033582	5590	Hs.496255	NM_001033581	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	"protein kinase C, zeta"	protein-coding
chr6.168219482.+	chr6	168219482	168219483	+	0	NA	Intergenic	AluSp|SINE|Alu	7994	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr1.218195551.+	chr1	218195551	218195552	+	0	NA	Intergenic	AluY|SINE|Alu	129309	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr7.157129482.+	chr7	157129482	157129483	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-228	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr16.1228085.+	chr16	1228085	1228086	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24844	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr8.142159786.+	chr8	142159786	142159787	+	0	NA	"intron (NM_014957, intron 5 of 22)"	MER6A|DNA|TcMar-Tigger	21066	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN/MADD domain containing 3	protein-coding
chr19.644284.+	chr19	644284	644285	+	0	NA	TTS (NM_020637)	TTS (NM_020637)	4358	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr10.32358163.+	chr10	32358163	32358164	+	0	NA	Intergenic	AluSg7|SINE|Alu	-12792	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr16.89034091.+	chr16	89034091	89034092	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9413	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr22.38498810.+	chr22	38498810	38498811	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7866	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr2.177042973.-	chr2	177042973	177042974	-	0	NA	"intron (NR_033979, intron 1 of 2)"	CpG	10334	NM_024501	3231	Hs.83465	NM_024501	ENSG00000128645	HOXD1	HOX4|HOX4G|Hox-4.7	homeobox D1	protein-coding
chr9.38705444.-	chr9	38705444	38705445	-	0	NA	Intergenic	AluY|SINE|Alu	-84359	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr9.137722613.-	chr9	137722613	137722614	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18602	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr3.183052393.-	chr3	183052393	183052394	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81361	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr3.126423098.+	chr3	126423098	126423099	+	0	NA	promoter-TSS (NM_032343)	promoter-TSS (NM_032343)	35	NM_032343	84303	Hs.518119	NM_032343	ENSG00000159685	CHCHD6	CHCM1|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
chr13.31735112.+	chr13	31735112	31735113	+	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	1005	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr3.8635277.+	chr3	8635277	8635278	+	0	NA	Intergenic	Intergenic	21809	NR_024065	29931	Hs.433151	NM_013343		LINC00312	ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312	long intergenic non-protein coding RNA 312	miscRNA
chr3.171911877.+	chr3	171911877	171911878	+	0	NA	"intron (NM_022763, intron 3 of 25)"	AluY|SINE|Alu	153533	NM_001135095	64778	Hs.159430	NM_001135095	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
chr15.29130789.-	chr15	29130789	29130790	-	0	NA	Intergenic	CpG	36968	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr6.167607673.-	chr6	167607673	167607674	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23592	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chrX.137770405.-	chrX	137770405	137770406	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20451	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr6.125475716.+	chr6	125475716	125475717	+	0	NA	"intron (NM_001003395, intron 1 of 6)"	CpG	296	NM_001003395	7164	Hs.591347	NM_001003395	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
chr4.56915130.-	chr4	56915130	56915131	-	0	NA	Intergenic	Intergenic	-100156	NM_025009	9662	Hs.518767	NM_025009		CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135kDa	protein-coding
chr1.178011416.-	chr1	178011416	178011417	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	4274	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr10.72271650.+	chr10	72271650	72271651	+	0	NA	"intron (NM_014431, intron 1 of 19)"	AluSx1|SINE|Alu	33086	NM_014431	27143	Hs.202351	NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	"phosphatase domain containing, paladin 1"	protein-coding
chr2.202721841.-	chr2	202721841	202721842	-	0	NA	"intron (NM_139158, intron 10 of 13)"	AluYb8|SINE|Alu	-50539	NM_001261436	65061	Hs.348711	NM_001261435	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin-dependent kinase 15	protein-coding
chr3.36421966.-	chr3	36421966	36421967	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	131	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr2.24809174.-	chr2	24809174	24809175	-	0	NA	"intron (NM_003743, intron 1 of 20)"	"intron (NM_003743, intron 1 of 20)"	-1828	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
chr2.203038194.-	chr2	203038194	203038195	-	0	NA	"intron (NM_001277372, intron 15 of 21)"	AluSp|SINE|Alu	-65128	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr12.131191640.-	chr12	131191640	131191641	-	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	-132179	NM_194356	2054	Hs.437585	NM_194356	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
chr11.17160909.+	chr11	17160909	17160910	+	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	30445	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr15.74791393.+	chr15	74791393	74791394	+	0	NA	Intergenic	AluSx|SINE|Alu	37787	NR_038448	440288	Hs.707910	NR_038448	ENSG00000247240	LOC440288	-	uncharacterized LOC440288	miscRNA
chr2.240371787.-	chr2	240371787	240371788	-	0	NA	Intergenic	SVA_D|Other|Other	49144	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr16.9185082.+	chr16	9185082	9185083	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-455	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr16.28435261.+	chr16	28435261	28435262	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2514	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr10.45240300.+	chr10	45240300	45240301	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166464	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr5.2740125.-	chr5	2740125	2740126	-	0	NA	Intergenic	CpG	-11644	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr18.20716030.-	chr18	20716030	20716031	-	0	NA	"exon (NM_001100619, exon 1 of 10)"	"exon (NM_001100619, exon 1 of 10)"	-303	NM_001100619	91768	Hs.11108	NM_001100619	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
chr7.810992.+	chr7	810992	810993	+	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	-43679	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr12.131419229.+	chr12	131419229	131419230	+	0	NA	Intergenic	AluSz|SINE|Alu	-19223	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr22.21042899.-	chr22	21042899	21042900	-	0	NA	promoter-TSS (NR_024592)	promoter-TSS (NR_024592)	944	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr7.130728502.+	chr7	130728502	130728503	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63287	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr19.5048254.+	chr19	5048254	5048255	+	0	NA	"intron (NM_015015, intron 6 of 22)"	"intron (NM_015015, intron 6 of 22)"	79130	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr3.178866326.-	chr3	178866326	178866327	-	0	NA	promoter-TSS (NM_006218)	promoter-TSS (NM_006218)	-15	NM_006218	5290	Hs.715194	NM_006218		PIK3CA	CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|p110-alpha	"phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha"	protein-coding
chr13.19728190.-	chr13	19728190	19728191	-	0	NA	Intergenic	Intergenic	-11068	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr14.106359680.-	chr14	106359680	106359681	-	0	NA	Intergenic	Intergenic	24158	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr2.25758484.-	chr2	25758484	25758485	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114607	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chrY.13462479.+	chrY	13462479	13462480	+	0	NA	Intergenic	Intergenic	1070910	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr5.78513852.+	chr5	78513852	78513853	+	0	NA	Intergenic	AluSx|SINE|Alu	-18073	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHDC1L3	"junction mediating and regulatory protein, p53 cofactor"	protein-coding
chr14.105134402.-	chr14	105134402	105134403	-	0	NA	Intergenic	AluSz|SINE|Alu	-9684	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr16.74847249.-	chr16	74847249	74847250	-	0	NA	Intergenic	Intergenic	38520	NM_024306	79152	Hs.461329	NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
chr8.54998370.-	chr8	54998370	54998371	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16207	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr17.22012674.-	chr17	22012674	22012675	-	0	NA	Intergenic	Intergenic	9763	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr1.10727946.-	chr1	10727946	10727947	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128787	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr18.29434803.-	chr18	29434803	29434804	-	0	NA	"intron (NM_014939, intron 21 of 28)"	AluY|SINE|Alu	-88288	NM_014939	22878	Hs.202001	NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
chr16.3203773.+	chr16	3203773	3203774	+	0	NA	Intergenic	AluSg|SINE|Alu	18639	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr7.124427314.-	chr7	124427314	124427315	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3550	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chrX.42145036.+	chrX	42145036	42145037	+	0	NA	Intergenic	SVA_D|Other|Other	-362749	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr17.16010339.-	chr17	16010339	16010340	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87614	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr17.47574145.+	chr17	47574145	47574146	+	0	NA	"intron (NM_002507, intron 1 of 5)"	CpG	1490	NM_002507	4804	Hs.681726	NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
chr8.26241043.-	chr8	26241043	26241044	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-520	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr7.53196246.+	chr7	53196246	53196247	+	0	NA	Intergenic	AluY|SINE|Alu	92897	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr10.106401629.+	chr10	106401629	106401630	+	0	NA	"exon (NM_014978, exon 1 of 27)"	"exon (NM_014978, exon 1 of 27)"	770	NM_014978	22986	Hs.671950	NM_014978	ENSG00000156395	SORCS3	SORCS	sortilin-related VPS10 domain containing receptor 3	protein-coding
chr7.128141932.+	chr7	128141932	128141933	+	0	NA	"exon (NM_018396, exon 9 of 9)"	"exon (NM_018396, exon 9 of 9)"	25149	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr3.95669684.+	chr3	95669684	95669685	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267647	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr12.33049720.-	chr12	33049720	33049721	-	0	NA	promoter-TSS (NM_004572)	promoter-TSS (NM_004572)	-60	NM_004572	5318	Hs.164384	NM_001005242	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
chr5.133831538.-	chr5	133831538	133831539	-	0	NA	Intergenic	AluY|SINE|Alu	30260	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr2.64739159.-	chr2	64739159	64739160	-	0	NA	Intergenic	SVA_F|Other|Other	12280	NM_001002243	54812	Hs.655167	NM_001002243	ENSG00000119844	AFTPH	Nbla10388	aftiphilin	protein-coding
chr5.179383833.+	chr5	179383833	179383834	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-48977	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chrX.48952499.-	chrX	48952499	48952500	-	0	NA	"intron (NM_007075, intron 2 of 11)"	AluY|SINE|Alu	-5560	NM_007075	11152	Hs.632807	NM_001029896	ENSG00000196998	WDR45	NBIA4|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
chr13.51885831.-	chr13	51885831	51885832	-	0	NA	Intergenic	AluSx|SINE|Alu	29337	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr17.27717846.+	chr17	27717846	27717847	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-97	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr11.62418880.-	chr11	62418880	62418881	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-1894	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr5.177538234.-	chr5	177538234	177538235	-	0	NA	Intergenic	AluSp|SINE|Alu	2322	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
chr11.4258898.+	chr11	4258898	4258899	+	0	NA	Intergenic	SVA_B|Other|Other	50516	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr5.140565.-	chr5	140565	140566	-	0	NA	"exon (NM_052909, exon 1 of 18)"	"exon (NM_052909, exon 1 of 18)"	-192	NM_052909	153478	Hs.535800	NM_052909		PLEKHG4B	-	"pleckstrin homology domain containing, family G (with RhoGef domain) member 4B"	protein-coding
chr6.170580904.+	chr6	170580904	170580905	+	0	NA	Intergenic	CpG	-9247	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr13.24884178.-	chr13	24884178	24884179	-	0	NA	"intron (NM_178540, intron 1 of 3)"	AluSg7|SINE|Alu	-462	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr2.85691634.+	chr2	85691634	85691635	+	0	NA	Intergenic	AluSg7|SINE|Alu	29716	NM_198482	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
chrX.86721003.+	chrX	86721003	86721004	+	0	NA	Intergenic	SVA_C|Other|Other	-51712	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr6.168395126.+	chr6	168395126	168395127	+	0	NA	Intergenic	AluSx|SINE|Alu	-17507	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr22.50710098.+	chr22	50710098	50710099	+	0	NA	Intergenic	CpG-18123	-1319	NM_002751	5600	Hs.57732	XM_003960822	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
chr8.123636965.+	chr8	123636965	123636966	+	0	NA	Intergenic	AluSx|SINE|Alu	-156936	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr5.43563180.+	chr5	43563180	43563181	+	0	NA	Intergenic	AluSg|SINE|Alu	-5659	NM_183323	10605	Hs.482038	NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding
chr1.10696310.+	chr1	10696310	10696311	+	0	NA	TTS (NM_001079843)	TTS (NM_001079843)	160423	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr18.77244868.-	chr18	77244868	77244869	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84542	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr20.61604905.+	chr20	61604905	61604906	+	0	NA	Intergenic	Intergenic	20906	NM_022082	63910	Hs.512686	NM_022082	ENSG00000101194	SLC17A9	C20orf59	"solute carrier family 17, member 9"	protein-coding
chr7.54614233.+	chr7	54614233	54614234	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4214	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr6.65337703.-	chr6	65337703	65337704	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673608	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr1.115078565.-	chr1	115078565	115078566	-	0	NA	Intergenic	Intergenic	24784	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chr5.180605880.+	chr5	180605880	180605881	+	0	NA	Intergenic	AluSx1|SINE|Alu	22050	NM_203297	81786	Hs.487412	NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
chr3.32863322.-	chr3	32863322	32863323	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3812	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr2.101924980.-	chr2	101924980	101924981	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-198	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr15.75116004.-	chr15	75116004	75116005	-	0	NA	"exon (NM_021819, exon 12 of 14)"	"exon (NM_021819, exon 12 of 14)"	2947	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII	complexin 3	protein-coding
chr9.19088667.+	chr9	19088667	19088668	+	0	NA	"intron (NM_001270890, intron 5 of 16)"	AluSx1|SINE|Alu	14273	NM_017645	54801	Hs.533468	NM_001270890	ENSG00000147874	HAUS6	Dgt6|FAM29A	"HAUS augmin-like complex, subunit 6"	protein-coding
chr15.28246989.+	chr15	28246989	28246990	+	0	NA	"intron (NM_000275, intron 9 of 23)"	"intron (NM_000275, intron 9 of 23)"	97469	NM_000275	4948	Hs.654411	NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
chr13.100353710.+	chr13	100353710	100353711	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluY|SINE|Alu	58397	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr15.29130807.-	chr15	29130807	29130808	-	0	NA	Intergenic	CpG	36986	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr7.1200566.-	chr7	1200566	1200567	-	0	NA	promoter-TSS (NM_182491)	promoter-TSS (NM_182491)	711	NM_182491	90637	Hs.648111	NM_182491	ENSG00000178381	ZFAND2A	AIRAP	"zinc finger, AN1-type domain 2A"	protein-coding
chr7.12751309.-	chr7	12751309	12751310	-	0	NA	Intergenic	AluY|SINE|Alu	-24398	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr8.123636937.+	chr8	123636937	123636938	+	0	NA	Intergenic	AluSx|SINE|Alu	-156964	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr5.172159004.-	chr5	172159004	172159005	-	0	NA	Intergenic	Intergenic	-39199	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
chr5.18111521.+	chr5	18111521	18111522	+	0	NA	Intergenic	AluY|SINE|Alu	-724102	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr17.80271612.+	chr17	80271612	80271613	+	0	NA	Intergenic	Intergenic	3868	NM_006137	924	Hs.36972	NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
chr2.207036828.+	chr2	207036828	207036829	+	0	NA	Intergenic	SVA_D|Other|Other	9876	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr17.25676740.+	chr17	25676740	25676741	+	0	NA	Intergenic	MER52D|LTR|ERV1	55634	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr17.7246126.-	chr17	7246126	7246127	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6278	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr2.55647039.+	chr2	55647039	55647040	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	18	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr15.55726768.+	chr15	55726768	55726769	+	0	NA	"intron (NR_037923, intron 7 of 15)"	BC200|scRNA|scRNA	26045	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr20.31118139.+	chr20	31118139	31118140	+	0	NA	"intron (NM_001256798, intron 1 of 10)"	AluY|SINE|Alu	-46754	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr12.75694252.+	chr12	75694252	75694253	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29584	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr3.80581469.+	chr3	80581469	80581470	+	0	NA	Intergenic	AluSg|SINE|Alu	-764410	NM_002941	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr17.79611165.-	chr17	79611165	79611166	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1816	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr11.127081199.+	chr11	127081199	127081200	+	0	NA	Intergenic	AluY|SINE|Alu	208394	NR_040078	283165	Hs.730461	NM_173579	ENSG00000218109	KIRREL3-AS3	NCRNA00288|PRR10	KIRREL3 antisense RNA 3	miscRNA
chr5.137550348.-	chr5	137550348	137550349	-	0	NA	Intergenic	AluY|SINE|Alu	1316	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr1.39450193.+	chr1	39450193	39450194	+	0	NA	Intergenic	AluY|SINE|Alu	-6723	NM_024595	79647	Hs.293563	NM_001136275	ENSG00000174574	AKIRIN1	C1orf108|RP11-781D11.2|STRF2	akirin 1	protein-coding
chr2.202898655.-	chr2	202898655	202898656	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	655	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr9.38705443.-	chr9	38705443	38705444	-	0	NA	Intergenic	AluY|SINE|Alu	-84358	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr13.56400586.+	chr13	56400586	56400587	+	0	NA	Intergenic	AluY|SINE|Alu	651997	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr11.47951830.+	chr11	47951830	47951831	+	0	NA	Intergenic	AluSz|SINE|Alu	-50280	NM_001098503	5795	Hs.318547	NM_001098503	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	"protein tyrosine phosphatase, receptor type, J"	protein-coding
chr14.35343854.-	chr14	35343854	35343855	-	0	NA	"5' UTR (NM_182648, exon 2 of 26)"	"5' UTR (NM_182648, exon 2 of 26)"	-999	NM_182648	11177	Hs.509140	NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	"bromodomain adjacent to zinc finger domain, 1A"	protein-coding
chr10.134034484.+	chr10	134034484	134034485	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34070	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr8.101595039.+	chr8	101595039	101595040	+	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	-23025	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chr7.1542308.-	chr7	1542308	1542309	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1710	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr5.69056901.-	chr5	69056901	69056902	-	0	NA	Intergenic	AluYa5|SINE|Alu	50629	NR_027386	653188	Hs.654588	NR_027386	ENSG00000253203	GUSBP3	-	"glucuronidase, beta pseudogene 3"	pseudo
chr5.37295981.-	chr5	37295981	37295982	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46451	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr6.123144205.-	chr6	123144205	123144206	-	0	NA	Intergenic	Intergenic	-34234	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr8.76091533.-	chr8	76091533	76091534	-	0	NA	Intergenic	L1PA16|LINE|L1	-194825	NM_031461	83690	Hs.436542	NM_031461	ENSG00000121005	CRISPLD1	CRISP10|LCRISP1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding
chr14.96343623.+	chr14	96343623	96343624	+	0	NA	"intron (NR_038861, intron 1 of 1)"	"intron (NR_038861, intron 1 of 1)"	514	NR_038861	100507043	Hs.455955	NR_038861	ENSG00000250366	LINC00617	-	long intergenic non-protein coding RNA 617	miscRNA
chr15.41613099.-	chr15	41613099	41613100	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11720	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr7.12595735.+	chr7	12595735	12595736	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14468	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr12.132116759.+	chr12	132116759	132116760	+	0	NA	Intergenic	L1ME1|LINE|L1	-78873	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr5.29531084.-	chr5	29531084	29531085	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604107	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr4.26342352.+	chr4	26342352	26342353	+	0	NA	"intron (NM_015874, intron 1 of 10)"	AluSc|SINE|Alu	19923	NM_203284	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
chr8.1562664.-	chr8	1562664	1562665	-	0	NA	"intron (NM_004745, intron 3 of 11)"	"intron (NM_004745, intron 3 of 11)"	-113132	NM_004745	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr16.3109376.+	chr16	3109376	3109377	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5937	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chrX.130461466.+	chrX	130461466	130461467	+	0	NA	Intergenic	SVA_D|Other|Other	-38063	NM_001555	3547	Hs.22111	NM_001170961	ENSG00000147255	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	"immunoglobulin superfamily, member 1"	protein-coding
chr9.105850394.-	chr9	105850394	105850395	-	0	NA	Intergenic	AluYc|SINE|Alu	-92801	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr2.38825082.+	chr2	38825082	38825083	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5096	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr3.122695645.-	chr3	122695645	122695646	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	664	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr3.84566269.+	chr3	84566269	84566270	+	0	NA	Intergenic	AluY|SINE|Alu	352457	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LOC440970	-	uncharacterized LOC440970	miscRNA
chr5.179281157.+	chr5	179281157	179281158	+	0	NA	"intron (NM_001017987, intron 1 of 4)"	AluY|SINE|Alu	4683	NM_001017987	51149	Hs.741169	NM_001018061	ENSG00000161010	C5orf45	-	chromosome 5 open reading frame 45	protein-coding
chr12.53235092.-	chr12	53235092	53235093	-	0	NA	"intron (NM_173352, intron 6 of 8)"	AluSc8|SINE|Alu	7015	NM_175834	338785	Hs.711471	NM_175834	ENSG00000185640	KRT79	K6L|KRT6L	keratin 79	protein-coding
chr22.30781371.-	chr22	30781371	30781372	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	-1931	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr7.130728565.-	chr7	130728565	130728566	-	0	NA	"intron (NR_024153, intron 1 of 2)"	"intron (NR_024153, intron 1 of 2)"	-63224	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr22.46522761.-	chr22	46522761	46522762	-	0	NA	Intergenic	Intergenic	-13195	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr10.46970883.-	chr10	46970883	46970884	-	0	NA	promoter-TSS (NM_031912)	promoter-TSS (NM_031912)	282	NM_181519	83849	Hs.696346	NM_031912	ENSG00000204176	SYT15	CHR10SYT|sytXV	synaptotagmin XV	protein-coding
chr5.1667712.-	chr5	1667712	1667713	-	0	NA	Intergenic	CpG	33592	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
chr17.1165704.+	chr17	1165704	1165705	+	0	NA	Intergenic	AluSg|SINE|Alu	-8154	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr3.122695616.-	chr3	122695616	122695617	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	635	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr16.1162581.+	chr16	1162581	1162582	+	0	NA	Intergenic	Intergenic	-16337	NM_207419	390664	Hs.527853	NM_207419		C1QTNF8	CTRP8|UNQ5829	C1q and tumor necrosis factor related protein 8	protein-coding
chr11.69189588.+	chr11	69189588	69189589	+	0	NA	Intergenic	Intergenic	127966	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr1.236252108.-	chr1	236252108	236252109	-	0	NA	Intergenic	Intergenic	23627	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr17.8625913.+	chr17	8625913	8625914	+	0	NA	Intergenic	AluY|SINE|Alu	22241	NM_144681	146849	Hs.121438	NM_001158261	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
chr19.7712336.+	chr19	7712336	7712337	+	0	NA	"exon (NM_001272034, exon 18 of 19)"	"exon (NM_001272034, exon 18 of 19)"	10349	NM_001127396	6813	Hs.515104	NM_001127396	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122	syntaxin binding protein 2	protein-coding
chrX.53930558.+	chrX	53930558	53930559	+	0	NA	Intergenic	AluSq2|SINE|Alu	139069	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr10.65213773.+	chr10	65213773	65213774	+	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSx|SINE|Alu	-11216	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr2.85554098.+	chr2	85554098	85554099	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1321	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr11.111190871.+	chr11	111190871	111190872	+	0	NA	Intergenic	AluYa5|SINE|Alu	-20332	NR_034154	399948	Hs.729225	NM_207429	ENSG00000196167	C11orf92	-	chromosome 11 open reading frame 92	miscRNA
chr19.18180418.+	chr19	18180418	18180419	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17279	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr8.126398070.-	chr8	126398070	126398071	-	0	NA	Intergenic	Intergenic	44493	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr8.43413773.-	chr8	43413773	43413774	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266188	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chrX.23353214.-	chrX	23353214	23353215	-	0	NA	"exon (NM_173495, exon 1 of 3)"	"exon (NM_173495, exon 1 of 3)"	-229	NM_173495	139411	Hs.319503	NM_173495		PTCHD1	-	patched domain containing 1	protein-coding
chr8.144503721.+	chr8	144503721	144503722	+	0	NA	Intergenic	CpG	8881	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.7148565.+	chr2	7148565	7148566	+	0	NA	"intron (NM_014746, intron 3 of 8)"	"intron (NM_014746, intron 3 of 8)"	-89752	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	miscRNA
chr21.43145953.+	chr21	43145953	43145954	+	0	NA	Intergenic	Intergenic	9357	NR_024028	54089	Hs.98186	NR_024028	ENSG00000232401	LINC00112	C21orf22|NCRNA00112	long intergenic non-protein coding RNA 112	miscRNA
chr12.32064884.+	chr12	32064884	32064885	+	0	NA	Intergenic	AluY|SINE|Alu	-47469	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr16.49356928.-	chr16	49356928	49356929	-	0	NA	Intergenic	AluSg4|SINE|Alu	41186	NM_004352	869	Hs.458423	NM_004352		CBLN1	-	cerebellin 1 precursor	protein-coding
chr15.20545749.+	chr15	20545749	20545750	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	57752	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr4.100907297.+	chr4	100907297	100907298	+	0	NA	Intergenic	AluY|SINE|Alu	35661	NR_002799	256880	Hs.448554	NR_002799		LOC256880	-	uncharacterized LOC256880	miscRNA
chr2.74161937.+	chr2	74161937	74161938	+	0	NA	"intron (NM_080918, intron 1 of 4)"	AluSz|SINE|Alu	7984	NM_080918	1716	Hs.469022	NM_080916	ENSG00000114956	DGUOK	MTDPS3|dGK	deoxyguanosine kinase	protein-coding
chrX.39680343.+	chrX	39680343	39680344	+	0	NA	Intergenic	CpG	276376	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr2.233454664.-	chr2	233454664	233454665	-	0	NA	Intergenic	AluY|SINE|Alu	16103	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr8.146024446.+	chr8	146024446	146024447	+	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	185	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr10.60273168.+	chr10	60273168	60273169	+	0	NA	"intron (NM_001080512, intron 1 of 20)"	CpG	264	NM_001080512	80114	Hs.158745	NM_001080512		BICC1	BICC|CYSRD	bicaudal C homolog 1 (Drosophila)	protein-coding
chr2.129581107.+	chr2	129581107	129581108	+	0	NA	Intergenic	L1PA7|LINE|L1	-504936	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr7.5396268.+	chr7	5396268	5396269	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66909	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr13.50177033.+	chr13	50177033	50177034	+	0	NA	Intergenic	AluY|SINE|Alu	-17314	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr19.5409940.-	chr19	5409940	5409941	-	0	NA	Intergenic	AluY|SINE|Alu	45486	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr1.158012617.-	chr1	158012617	158012618	-	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	-49554	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr13.21872276.+	chr13	21872276	21872277	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	12	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr12.43781892.-	chr12	43781892	43781893	-	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	-163832	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr5.130576934.-	chr5	130576934	130576935	-	0	NA	Intergenic	AluY|SINE|Alu	22768	NM_020240	56990	Hs.713870	NM_001038702	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
chr3.22843188.+	chr3	22843188	22843189	+	0	NA	Intergenic	L1PA2|LINE|L1	-401596	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr6.85476306.-	chr6	85476306	85476307	-	0	NA	Intergenic	Intergenic	2352	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr5.76925710.-	chr5	76925710	76925711	-	0	NA	"3' UTR (NM_032109, exon 3 of 3)"	"3' UTR (NM_032109, exon 3 of 3)"	-8812	NM_032109	23440	Hs.202247	NM_032109		OTP	-	orthopedia homeobox	protein-coding
chr17.65335412.-	chr17	65335412	65335413	-	0	NA	Intergenic	AluSx|SINE|Alu	-27309	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr2.85554173.+	chr2	85554173	85554174	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1246	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr16.194672.-	chr16	194672	194673	-	0	NA	Intergenic	AluSx|SINE|Alu	5975	NM_001243249	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr7.99040105.+	chr7	99040105	99040106	+	0	NA	"intron (NM_001081559, intron 1 of 7)"	AluYf4|SINE|Alu	3542	NM_001081559	10898	Hs.489287	NM_001081559	ENSG00000160917	CPSF4	CPSF30|NAR|NEB1	"cleavage and polyadenylation specific factor 4, 30kDa"	protein-coding
chr12.92345741.+	chr12	92345741	92345742	+	0	NA	Intergenic	AluSx1|SINE|Alu	189748	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr16.209970.+	chr16	209970	209971	+	0	NA	Intergenic	Intergenic	-6003	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr19.10587510.+	chr19	10587510	10587511	+	0	NA	Intergenic	AluSq2|SINE|Alu	23877	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr12.121346480.-	chr12	121346480	121346481	-	0	NA	Intergenic	AluSp|SINE|Alu	4325	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr18.33543839.-	chr18	33543839	33543840	-	0	NA	Intergenic	AluY|SINE|Alu	8749	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr2.10952444.-	chr2	10952444	10952445	-	0	NA	"intron (NM_005742, intron 1 of 12)"	CpG	-516	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr9.861775.+	chr9	861775	861776	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20085	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr2.73145262.-	chr2	73145262	73145263	-	0	NA	"exon (NM_004097, exon 1 of 3)"	"exon (NM_004097, exon 1 of 3)"	-658	NM_004097	2016	Hs.516090	NM_001040404	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
chr3.82035868.+	chr3	82035868	82035869	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-224918	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr7.532203.-	chr7	532203	532204	-	0	NA	Intergenic	Intergenic	-27278	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chrX.19862944.+	chrX	19862944	19862945	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42800	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr10.88698884.+	chr10	88698884	88698885	+	0	NA	"intron (NM_024756, intron 6 of 6)"	AluSp|SINE|Alu	18541	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chr20.46387691.-	chr20	46387691	46387692	-	0	NA	"intron (NM_198596, intron 1 of 20)"	"intron (NM_198596, intron 1 of 20)"	-27117	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr3.14349510.+	chr3	14349510	14349511	+	0	NA	Intergenic	Intergenic	-94596	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr14.77227962.-	chr14	77227962	77227963	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	273	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr19.16612702.+	chr19	16612702	16612703	+	0	NA	"intron (NM_032207, intron 2 of 8)"	"intron (NM_032207, intron 2 of 8)"	5497	NM_032207	84167	Hs.631627	NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
chr5.126113380.-	chr5	126113380	126113381	-	0	NA	"exon (NM_005573, exon 1 of 11)"	"exon (NM_005573, exon 1 of 11)"	-535	NM_001198557	4001	Hs.89497	NM_001198557	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB	lamin B1	protein-coding
chr7.45775942.-	chr7	45775942	45775943	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32675	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr16.46957180.-	chr16	46957180	46957181	-	0	NA	"intron (NM_001142466, intron 9 of 11)"	AluSx|SINE|Alu	-38078	NM_001142466	84706	Hs.460693	NM_001142466	ENSG00000166123	GPT2	ALT2	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding
chr20.62673925.+	chr20	62673925	62673926	+	0	NA	Intergenic	CpG	7054	NM_018419	54345	Hs.8619	NM_018419	ENSG00000203883	SOX18	HLTS	SRY (sex determining region Y)-box 18	protein-coding
chr21.44846734.-	chr21	44846734	44846735	-	0	NA	"intron (NM_173354, intron 1 of 13)"	"intron (NM_173354, intron 1 of 13)"	-268	NM_173354	150094	Hs.700423	NM_173354	ENSG00000142178	SIK1	MSK|SIK|SNF1LK	salt-inducible kinase 1	protein-coding
chr14.38064824.-	chr14	38064824	38064825	-	0	NA	promoter-TSS (NM_004496)	promoter-TSS (NM_004496)	499	NM_004496	3169	Hs.163484	NM_004496	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
chr20.59829214.+	chr20	59829214	59829215	+	0	NA	"intron (NM_001794, intron 1 of 15)"	"intron (NM_001794, intron 1 of 15)"	1732	NM_001794	1002	Hs.473231	NM_001252338		CDH4	CAD4|RCAD	"cadherin 4, type 1, R-cadherin (retinal)"	protein-coding
chr2.170687950.+	chr2	170687950	170687951	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3932	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr2.239058259.-	chr2	239058259	239058260	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10896	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr17.48133606.+	chr17	48133606	48133607	+	0	NA	promoter-TSS (NR_038230)	promoter-TSS (NR_038230)	266	NM_002204	3675	Hs.265829	NM_002204	ENSG00000005884	ITGA3	CD49C|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a	"integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)"	protein-coding
chr11.113665988.+	chr11	113665988	113665989	+	0	NA	Intergenic	AluSx|SINE|Alu	15470	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr5.1466240.+	chr5	1466240	1466241	+	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	-20697	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr2.48154734.-	chr2	48154734	48154735	-	0	NA	Intergenic	AluSc|SINE|Alu	21802	NM_001190274	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chr2.240234585.-	chr2	240234585	240234586	-	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	-7428	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr2.130499497.+	chr2	130499497	130499498	+	0	NA	Intergenic	Intergenic	192393	NR_026740	389033	Hs.380682	NR_026740	ENSG00000214100	LOC389033	-	placenta-specific 9 pseudogene	pseudo
chr11.118862311.-	chr11	118862311	118862312	-	0	NA	Intergenic	SVA_B|Other|Other	6541	NM_198489	338657	Hs.534613	NM_198489	ENSG00000186166	CCDC84	-	coiled-coil domain containing 84	protein-coding
chr17.25676753.+	chr17	25676753	25676754	+	0	NA	Intergenic	MER52D|LTR|ERV1	55647	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr5.177264230.-	chr5	177264230	177264231	-	0	NA	Intergenic	AluY|SINE|Alu	38032	NR_003615	728554	Hs.535769	NR_003615	ENSG00000170089	LOC728554	-	THO complex 3 pseudogene	pseudo
chr11.9243355.-	chr11	9243355	9243356	-	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	-43518	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr14.20778646.+	chr14	20778646	20778647	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4493	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chr5.86907797.+	chr5	86907797	86907798	+	0	NA	Intergenic	AluY|SINE|Alu	-198947	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr2.91635127.+	chr2	91635127	91635128	+	0	NA	Intergenic	CpG	212848	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr14.93564788.+	chr14	93564788	93564789	+	0	NA	"intron (NM_014216, intron 2 of 10)"	AluY|SINE|Alu	17475	NM_001142593	3705	Hs.308122	NM_001142593	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
chr10.14930955.-	chr10	14930955	14930956	-	0	NA	"intron (NM_001193425, intron 2 of 5)"	AluSp|SINE|Alu	-10056	NM_024670	79723	Hs.554883	NM_001193424	ENSG00000152455	SUV39H2	KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding
chr2.240371806.-	chr2	240371806	240371807	-	0	NA	Intergenic	SVA_D|Other|Other	49163	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chrM.9295.+	chrM	9295	9296	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.38230089.-	chr1	38230089	38230090	-	0	NA	"intron (NM_173641, intron 1 of 2)"	CpG	-735	NM_001099439	284656	Hs.129435	NM_001004338	ENSG00000183317	EPHA10	-	EPH receptor A10	protein-coding
chr14.77227963.-	chr14	77227963	77227964	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	272	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr4.163164024.+	chr4	163164024	163164025	+	0	NA	Intergenic	AluY|SINE|Alu	-78838	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr11.189875.-	chr11	189875	189876	-	0	NA	Intergenic	TAR1|Satellite|telo	3205	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	"secretoglobin, family 1C, member 1-like"	protein-coding
chr5.22207151.+	chr5	22207151	22207152	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64690	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr11.63976996.+	chr11	63976996	63976997	+	0	NA	"intron (NM_178443, intron 2 of 14)"	"intron (NM_178443, intron 2 of 14)"	2844	NM_031471	83706	Hs.180535	NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	fermitin family member 3	protein-coding
chr15.30396196.+	chr15	30396196	30396197	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	261	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr7.22130144.+	chr7	22130144	22130145	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-144602	NM_001127371	55536	Hs.744069	NM_001127370	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
chr4.83350677.+	chr4	83350677	83350678	+	0	NA	"exon (NM_001207000, exon 1 of 7)"	"exon (NM_001207000, exon 1 of 7)"	701	NM_031372	9987	Hs.707013	NM_001207000	ENSG00000152795	HNRPDL	HNRNP|JKTBP|JKTBP2|laAUF1	heterogeneous nuclear ribonucleoprotein D-like	protein-coding
chr17.77198154.-	chr17	77198154	77198155	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-127135	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr1.40657244.-	chr1	40657244	40657245	-	0	NA	"intron (NM_012421, intron 3 of 7)"	AluJo|SINE|Alu	-30203	NM_012421	6018	Hs.205627	NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	rearranged L-myc fusion	protein-coding
chr12.111844110.-	chr12	111844110	111844111	-	0	NA	"intron (NM_005475, intron 1 of 7)"	CpG	-358	NM_005475	10019	Hs.506784	NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
chr16.27047217.-	chr16	27047217	27047218	-	0	NA	Intergenic	AluSx|SINE|Alu	31002	NM_001145545	162083	Hs.120831	NM_182831		C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
chr12.34354021.-	chr12	34354021	34354022	-	0	NA	Intergenic	AluSz|SINE|Alu	-178805	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr2.10405946.-	chr2	10405946	10405947	-	0	NA	Intergenic	Intergenic	37084	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr12.49063501.-	chr12	49063501	49063502	-	0	NA	"intron (NM_017822, intron 5 of 9)"	AluYc|SINE|Alu	2125	NR_002951	677794	Hs.683444	NR_002951		SNORA2B	ACA2b	"small nucleolar RNA, H/ACA box 2B"	snoRNA
chr11.132813769.+	chr11	132813769	132813770	+	0	NA	promoter-TSS (NM_002545)	promoter-TSS (NM_002545)	-732	NM_002545	4978	Hs.4817	NM_001012393	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule-like	protein-coding
chr22.30115918.-	chr22	30115918	30115919	-	0	NA	promoter-TSS (NM_182527)	promoter-TSS (NM_182527)	426	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
chr6.143227030.-	chr6	143227030	143227031	-	0	NA	"intron (NM_006734, intron 1 of 9)"	AluSz6|SINE|Alu	-39308	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chr16.632109.-	chr16	632109	632110	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7248	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr12.34501177.+	chr12	34501177	34501178	+	0	NA	Intergenic	GSATII|Satellite|centr	325961	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr14.23706336.-	chr14	23706336	23706337	-	0	NA	Intergenic	AluJb|SINE|Alu	-48973	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr5.176278471.-	chr5	176278471	176278472	-	0	NA	"intron (NM_133369, intron 1 of 14)"	"intron (NM_133369, intron 1 of 14)"	-40911	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 homolog A (C. elegans)	protein-coding
chrX.129231031.-	chrX	129231031	129231032	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13444	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr10.120946130.+	chr10	120946130	120946131	+	0	NA	Intergenic	AluY|SINE|Alu	-7785	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr5.114712444.-	chr5	114712444	114712445	-	0	NA	Intergenic	AluYc3|SINE|Alu	79986	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr17.4488406.+	chr17	4488406	4488407	+	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	572	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr16.12210438.-	chr16	12210438	12210439	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139836	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr9.6559739.+	chr9	6559739	6559740	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85953	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr12.32064878.+	chr12	32064878	32064879	+	0	NA	Intergenic	AluY|SINE|Alu	-47475	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr11.66997294.+	chr11	66997294	66997295	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10212	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr17.13504896.+	chr17	13504896	13504897	+	0	NA	"5' UTR (NM_006042, exon 1 of 2)"	"5' UTR (NM_006042, exon 1 of 2)"	348	NM_006042	9955	Hs.462270	NM_006042	ENSG00000153976	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
chr7.54614251.+	chr7	54614251	54614252	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4232	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr20.44650559.+	chr20	44650559	44650560	+	0	NA	"intron (NM_001134771, intron 1 of 25)"	(CGGGG)n|Simple_repeat|Simple_repeat	230	NM_001134771	57468	Hs.21413	NM_001134771	ENSG00000124140	SLC12A5	KCC2	"solute carrier family 12 (potassium/chloride transporter), member 5"	protein-coding
chr2.70142574.+	chr2	70142574	70142575	+	0	NA	"intron (NM_001202513, intron 1 of 5)"	CpG	401	NM_001202513	4084	Hs.468908	NM_001202513	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
chr3.73614813.+	chr3	73614813	73614814	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59259	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr8.117309710.+	chr8	117309710	117309711	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27587	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr5.77656269.+	chr5	77656269	77656270	+	0	NA	promoter-TSS (NM_004866)	promoter-TSS (NM_004866)	-70	NM_004866	9522	Hs.482587	NM_004866		SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
chr2.70199635.+	chr2	70199635	70199636	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10238	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr13.114899244.+	chr13	114899244	114899245	+	0	NA	Intergenic	Intergenic	-1149	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.97404500.-	chr2	97404500	97404501	-	0	NA	"intron (NR_024518, intron 1 of 7)"	AluY|SINE|Alu	-1313	NR_024521	81562	Hs.655743	NM_001142292	ENSG00000114988	LMAN2L	VIPL	"lectin, mannose-binding 2-like"	protein-coding
chr14.23706333.-	chr14	23706333	23706334	-	0	NA	Intergenic	AluJb|SINE|Alu	-48976	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr6.132850731.+	chr6	132850731	132850732	+	0	NA	Intergenic	AluY|SINE|Alu	-8696	NM_175057	134860	Hs.434116	NM_175057	ENSG00000237110	TAAR9	TA3|TAR3|TAR9|TRAR3	trace amine associated receptor 9 (gene/pseudogene)	protein-coding
chr19.39475282.+	chr19	39475282	39475283	+	0	NA	Intergenic	AluSz|SINE|Alu	-8902	NM_024907	115290	Hs.531770	NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
chr1.212898496.+	chr1	212898496	212898497	+	0	NA	TTS (NM_001042549)	TTS (NM_001042549)	-25169	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr1.181058719.-	chr1	181058719	181058720	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1081	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr17.4453832.+	chr17	4453832	4453833	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4849	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr1.246995895.+	chr1	246995895	246995896	+	0	NA	Intergenic	AluSx1|SINE|Alu	42976	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chrX.12751744.-	chrX	12751744	12751745	-	0	NA	Intergenic	AluY|SINE|Alu	57730	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr16.81206637.-	chr16	81206637	81206638	-	0	NA	"intron (NM_001076780, intron 16 of 17)"	LTR33|LTR|ERVL	-47338	NM_001076780	114780	Hs.413525	NM_001076780	ENSG00000166473	PKD1L2	PC1L2	polycystic kidney disease 1-like 2	protein-coding
chr17.2594904.+	chr17	2594904	2594905	+	0	NA	"exon (NM_015229, exon 25 of 26)"	"exon (NM_015229, exon 25 of 26)"	20023	NM_015229	23277	Hs.22616	NM_015229	ENSG00000132361	CLUH	CLU1|KIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding
chr2.81982192.+	chr2	81982192	81982193	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101735	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr9.6559765.+	chr9	6559765	6559766	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85927	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr11.62551830.-	chr11	62551830	62551831	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3044	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr16.1845112.-	chr16	1845112	1845113	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	203	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.5574463.+	chr7	5574463	5574464	+	0	NA	Intergenic	AluJb|SINE|Alu	-4231	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr4.163164050.-	chr4	163164050	163164051	-	0	NA	Intergenic	AluY|SINE|Alu	78864	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr2.198058524.+	chr2	198058524	198058525	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	116997	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr17.4900635.+	chr17	4900635	4900636	+	0	NA	promoter-TSS (NM_006612)	promoter-TSS (NM_006612)	270	NM_213726	388324	Hs.658926	NM_001167985	ENSG00000196388	INCA1	-	"inhibitor of CDK, cyclin A1 interacting protein 1"	protein-coding
chr3.196618970.-	chr3	196618970	196618971	-	0	NA	"intron (NM_152699, intron 2 of 9)"	AluJb|SINE|Alu	-24243	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr19.3810424.-	chr19	3810424	3810425	-	0	NA	"intron (NM_015174, intron 16 of 18)"	"intron (NM_015174, intron 16 of 18)"	8614	NM_002378	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chr14.24835902.-	chr14	24835902	24835903	-	0	NA	promoter-TSS (NM_001198967)	promoter-TSS (NM_001198967)	243	NM_001198967	4776	Hs.77810	NM_001136022	ENSG00000100968	NFATC4	NF-ATc4|NFAT3	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4"	protein-coding
chr22.43238132.-	chr22	43238132	43238133	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15276	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr3.195498016.-	chr3	195498016	195498017	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40828	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr22.38498797.+	chr22	38498797	38498798	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7879	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr19.44489502.+	chr19	44489502	44489503	+	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	1180	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr22.18892164.+	chr22	18892164	18892165	+	0	NA	Intergenic	Intergenic	-1572	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chrX.112142784.-	chrX	112142784	112142785	-	0	NA	Intergenic	AluY|SINE|Alu	58741	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr12.31575292.-	chr12	31575292	31575293	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96133	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr16.68233537.-	chr16	68233537	68233538	-	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	-36599	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr1.54333328.+	chr1	54333328	54333329	+	0	NA	"intron (NR_036639, intron 7 of 11)"	AluY|SINE|Alu	22159	NR_036640	54432	Hs.731661	NM_018982	ENSG00000058799	YIPF1	DJ167A19.1|FinGER1	"Yip1 domain family, member 1"	protein-coding
chrX.42939948.+	chrX	42939948	42939949	+	0	NA	Intergenic	AluSx|SINE|Alu	-302462	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr2.131552000.-	chr2	131552000	131552001	-	0	NA	Intergenic	AluY|SINE|Alu	-38136	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr19.1912000.-	chr19	1912000	1912001	-	0	NA	"5' UTR (NM_138422, exon 2 of 2)"	"5' UTR (NM_138422, exon 2 of 2)"	-6627	NM_079834	113178	Hs.144980	NM_079834	ENSG00000227500	SCAMP4	SCAMP-4	secretory carrier membrane protein 4	protein-coding
chr18.44022032.+	chr18	44022032	44022033	+	0	NA	"intron (NM_152470, intron 3 of 7)"	AluYg6|SINE|Alu	77017	NM_001173129	125336	Hs.345877	NM_001145472	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology domains 1	protein-coding
chr5.112263699.-	chr5	112263699	112263700	-	0	NA	Intergenic	AluY|SINE|Alu	5668	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr2.239058242.+	chr2	239058242	239058243	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10879	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr18.1298463.+	chr18	1298463	1298464	+	0	NA	"intron (NR_023926, intron 2 of 5)"	AluY|SINE|Alu	61167	NR_023927	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	miscRNA
chr4.26862281.+	chr4	26862281	26862282	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-32	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr1.222791760.+	chr1	222791760	222791761	+	0	NA	"intron (NM_198551, intron 1 of 27)"	CpG	316	NM_198551	375056	Hs.118474	NM_198551	ENSG00000154305	MIA3	ARNT|D320|TANGO|TANGO1|UNQ6077	"melanoma inhibitory activity family, member 3"	protein-coding
chr17.18575684.-	chr17	18575684	18575685	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-810	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr15.41539537.+	chr15	41539537	41539538	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16100	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr13.50222213.-	chr13	50222213	50222214	-	0	NA	Intergenic	AluY|SINE|Alu	-19778	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr12.12518371.+	chr12	12518371	12518372	+	0	NA	"intron (NM_058169, intron 2 of 3)"	AluJb|SINE|Alu	8351	NM_058169	118426	Hs.720779	NM_058169	ENSG00000165714	LOH12CR1	LOH1CR12	"loss of heterozygosity, 12, chromosomal region 1"	protein-coding
chr5.177387341.+	chr5	177387341	177387342	+	0	NA	Intergenic	AluY|SINE|Alu	35902	NM_006261	5626	Hs.158301	NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
chr4.163164028.-	chr4	163164028	163164029	-	0	NA	Intergenic	AluY|SINE|Alu	78842	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr5.164946635.+	chr5	164946635	164946636	+	0	NA	Intergenic	AluY|SINE|Alu	-1765208	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr12.26964582.+	chr12	26964582	26964583	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21549	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr12.112407466.-	chr12	112407466	112407467	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43557	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr15.27112738.+	chr15	27112738	27112739	+	0	NA	"intron (NM_001165037, intron 1 of 10)"	CpG	465	NM_001165037	2558	Hs.24969	NM_000810	ENSG00000186297	GABRA5	-	"gamma-aminobutyric acid (GABA) A receptor, alpha 5"	protein-coding
chr7.116312409.+	chr7	116312409	116312410	+	0	NA	promoter-TSS (NM_000245)	promoter-TSS (NM_000245)	-50	NM_000245	4233	Hs.132966	NM_000245	ENSG00000105976	MET	AUTS9|HGFR|RCCP2|c-Met	met proto-oncogene (hepatocyte growth factor receptor)	protein-coding
chr1.145075957.-	chr1	145075957	145075958	-	0	NA	"5' UTR (NM_022359, exon 1 of 7)"	"5' UTR (NM_022359, exon 1 of 7)"	-229	NM_022359	9659	Hs.731111	NM_001002810	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
chr3.129048079.-	chr3	129048079	129048080	-	0	NA	Intergenic	AluY|SINE|Alu	12959	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr1.197754709.-	chr1	197754709	197754710	-	0	NA	Intergenic	AluY|SINE|Alu	10086	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr10.59351229.-	chr10	59351229	59351230	-	0	NA	Intergenic	AluY|SINE|Alu	286910	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr5.78513865.+	chr5	78513865	78513866	+	0	NA	Intergenic	AluSx|SINE|Alu	-18060	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHDC1L3	"junction mediating and regulatory protein, p53 cofactor"	protein-coding
chr1.3022464.-	chr1	3022464	3022465	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	22075	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr2.208475933.+	chr2	208475933	208475934	+	0	NA	"3' UTR (NM_145280, exon 4 of 4)"	"3' UTR (NM_145280, exon 4 of 4)"	13763	NM_145280	151194	Hs.664764	NM_001127395	ENSG00000144401	METTL21A	FAM119A|HCA557b	methyltransferase like 21A	protein-coding
chr16.89033996.+	chr16	89033996	89033997	+	0	NA	"intron (NM_005187, intron 1 of 11)"	"intron (NM_005187, intron 1 of 11)"	9508	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chrM.6566.-	chrM	6566	6567	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.136900817.+	chr9	136900817	136900818	+	0	NA	"intron (NM_007371, intron 10 of 11)"	"intron (NM_007371, intron 10 of 11)"	10256	NR_015427	266655	Hs.654869	NR_002800		LINC00094	LP2477|NCRNA00094|bA374P20.3	long intergenic non-protein coding RNA 94	miscRNA
chr9.108210388.+	chr9	108210388	108210389	+	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	63	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chrX.11749439.-	chrX	11749439	11749440	-	0	NA	Intergenic	AluSx|SINE|Alu	26839	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr10.7542200.-	chr10	7542200	7542201	-	0	NA	Intergenic	AluSc8|SINE|Alu	88752	NM_001029880	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
chr14.102050488.-	chr14	102050488	102050489	-	0	NA	Intergenic	Intergenic	-22800	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr2.228067289.+	chr2	228067289	228067290	+	0	NA	"intron (NM_000091, intron 1 of 51)"	AluYk4|SINE|Alu	38008	NM_000091	1285	Hs.570065	NM_000091	ENSG00000169031	COL4A3	-	"collagen, type IV, alpha 3 (Goodpasture antigen)"	protein-coding
chrX.152916287.+	chrX	152916287	152916288	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8390	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr7.100044625.-	chr7	100044625	100044626	-	0	NA	Intergenic	AluY|SINE|Alu	10531	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr7.5244737.-	chr7	5244737	5244738	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9163	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr3.45348393.-	chr3	45348393	45348394	-	0	NA	Intergenic	LTR12C|LTR|ERV1	80579	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr1.6471015.+	chr1	6471015	6471016	+	0	NA	Intergenic	AluSz|SINE|Alu	8964	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr5.99626507.-	chr5	99626507	99626508	-	0	NA	Intergenic	AluY|SINE|Alu	-97451	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	"glucuronidase, beta pseudogene"	pseudo
chr3.177129386.-	chr3	177129386	177129387	-	0	NA	Intergenic	AluSx1|SINE|Alu	30323	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	miscRNA
chr12.117737205.-	chr12	117737205	117737206	-	0	NA	"intron (NM_000620, intron 3 of 28)"	AluY|SINE|Alu	-5652	NM_001204213	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr6.14976605.+	chr6	14976605	14976606	+	0	NA	Intergenic	LTR2|LTR|ERV1	-269601	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr15.90792666.+	chr15	90792666	90792667	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-98	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr8.128328730.+	chr8	128328730	128328731	+	0	NA	Intergenic	Intergenic	-99127	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr11.42366669.+	chr11	42366669	42366670	+	0	NA	Intergenic	AluYk4|SINE|Alu	-91429	NR_038309	100507205	Hs.99310	NR_038309		LOC100507205	-	uncharacterized LOC100507205	miscRNA
chr11.17905659.-	chr11	17905659	17905660	-	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	-128978	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chr5.1476564.-	chr5	1476564	1476565	-	0	NA	"intron (NM_024830, intron 9 of 13)"	"intron (NM_024830, intron 9 of 13)"	31021	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr19.1123452.-	chr19	1123452	1123453	-	0	NA	"intron (NM_014963, intron 7 of 31)"	"intron (NM_014963, intron 7 of 31)"	-8821	NM_001100122	22904	Hs.408708	NM_001100122	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
chr1.40330220.-	chr1	40330220	40330221	-	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	-18957	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr5.1619849.-	chr5	1619849	1619850	-	0	NA	"intron (NR_003713, intron 2 of 3)"	MLT2B4|LTR|ERVL	-14271	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
chr2.88284173.-	chr2	88284173	88284174	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	AluY|SINE|Alu	-1136	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
chr6.85476322.-	chr6	85476322	85476323	-	0	NA	Intergenic	Intergenic	2368	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr3.173023568.-	chr3	173023568	173023569	-	0	NA	Intergenic	AluYc|SINE|Alu	92676	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding
chr1.59041985.+	chr1	59041985	59041986	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1181	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr7.95182016.-	chr7	95182016	95182017	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-43909	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr16.51744415.+	chr16	51744415	51744416	+	0	NA	Intergenic	Intergenic	363432	NM_001242473	388276	Hs.534669	NM_001242473	ENSG00000261190	C16orf97	-	chromosome 16 open reading frame 97	protein-coding
chr19.23432252.+	chr19	23432252	23432253	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	920	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr13.100934733.-	chr13	100934733	100934734	-	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	-193464	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr4.114652888.+	chr4	114652888	114652889	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30195	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr18.66366005.+	chr18	66366005	66366006	+	0	NA	"intron (NM_019022, intron 6 of 15)"	AluYk4|SINE|Alu	16348	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr17.7246093.-	chr17	7246093	7246094	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6245	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr3.15147869.-	chr3	15147869	15147870	-	0	NA	Intergenic	AluSz|SINE|Alu	7214	NM_022340	64145	Hs.706478	NM_022340	ENSG00000131381	ZFYVE20	Rabenosyn-5	"zinc finger, FYVE domain containing 20"	protein-coding
chr8.88902492.+	chr8	88902492	88902493	+	0	NA	Intergenic	AluSx3|SINE|Alu	-16196	NM_152418	138009	Hs.371738	NM_152418	ENSG00000176566	DCAF4L2	WDR21C	DDB1 and CUL4 associated factor 4-like 2	protein-coding
chr3.42642477.-	chr3	42642477	42642478	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-95	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr7.102565270.-	chr7	102565270	102565271	-	0	NA	"intron (NM_145032, intron 10 of 19)"	AluYc|SINE|Alu	-11926	NM_001031692	10234	Hs.567412	NM_001031692	ENSG00000128606	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
chr2.118981949.+	chr2	118981949	118981950	+	0	NA	Intergenic	CpG	135899	NM_016133	51141	Hs.7089	NM_016133	ENSG00000125629	INSIG2	-	insulin induced gene 2	protein-coding
chr1.7952834.+	chr1	7952834	7952835	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39283	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr10.123791056.-	chr10	123791056	123791057	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42367	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr19.3644529.+	chr19	3644529	3644530	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17716	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr9.88491253.+	chr9	88491253	88491254	+	0	NA	Intergenic	AluYc|SINE|Alu	-64804	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr9.135946994.-	chr9	135946994	135946995	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9629	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr19.10408197.-	chr19	10408197	10408198	-	0	NA	TTS (NM_003259)	TTS (NM_003259)	-7542	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr5.37382791.+	chr5	37382791	37382792	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3379	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr12.133020966.+	chr12	133020966	133020967	+	0	NA	Intergenic	Intergenic	-46191	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr7.1542241.+	chr7	1542241	1542242	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1777	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr16.31932490.+	chr16	31932490	31932491	+	0	NA	Intergenic	AluY|SINE|Alu	47411	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr19.46786017.+	chr19	46786017	46786018	+	0	NA	"intron (NR_046936, intron 3 of 3)"	AluSx1|SINE|Alu	-14286	NM_152795	64344	Hs.420830	NM_022462	ENSG00000124440	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	"hypoxia inducible factor 3, alpha subunit"	protein-coding
chr11.62418865.-	chr11	62418865	62418866	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-1909	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr7.4516794.-	chr7	4516794	4516795	-	0	NA	Intergenic	AluSx1|SINE|Alu	205136	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr12.131551540.-	chr12	131551540	131551541	-	0	NA	"intron (NM_198827, intron 13 of 24)"	"intron (NM_198827, intron 13 of 24)"	98016	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr5.176900927.+	chr5	176900927	176900928	+	0	NA	promoter-TSS (NM_004395)	promoter-TSS (NM_004395)	-233	NM_004395	1627	Hs.130316	NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
chr2.8207429.+	chr2	8207429	8207430	+	0	NA	"intron (NR_034135, intron 7 of 8)"	AluSg|SINE|Alu	-90484	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LOC339788	-	uncharacterized LOC339788	miscRNA
chr6.8388550.-	chr6	8388550	8388551	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47244	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr1.183670832.-	chr1	183670832	183670833	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48384	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr7.64198981.+	chr7	64198981	64198982	+	0	NA	Intergenic	SVA_D|Other|Other	-55785	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chrX.12171154.+	chrX	12171154	12171155	+	0	NA	"intron (NM_014728, intron 1 of 16)"	AluYb8|SINE|Alu	14569	NM_014728	9758	Hs.657507	NM_014728	ENSG00000169933	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
chr1.236252180.-	chr1	236252180	236252181	-	0	NA	Intergenic	AluY|SINE|Alu	23699	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr6.21206336.-	chr6	21206336	21206337	-	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	387636	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr17.42869174.-	chr17	42869174	42869175	-	0	NA	Intergenic	AluY|SINE|Alu	-32606	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr8.129430396.+	chr8	129430396	129430397	+	0	NA	Intergenic	AluSx3|SINE|Alu	268034	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	miscRNA
chr1.145400441.+	chr1	145400441	145400442	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12750	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chrX.23801534.-	chrX	23801534	23801535	-	0	NA	"exon (NM_002970, exon 1 of 6)"	"exon (NM_002970, exon 1 of 6)"	-259	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr11.342869.-	chr11	342869	342870	-	0	NA	Intergenic	AluSz|SINE|Alu	21955	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr4.54204847.+	chr4	54204847	54204848	+	0	NA	"intron (NM_152540, intron 2 of 8)"	AluYa5|SINE|Alu	27395	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr2.101924972.+	chr2	101924972	101924973	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	206	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr4.48016937.+	chr4	48016937	48016938	+	0	NA	Intergenic	AluY|SINE|Alu	-1854	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr11.44598165.-	chr11	44598165	44598166	-	0	NA	"intron (NM_001024844, intron 1 of 8)"	MIR3|SINE|MIR	-11024	NM_001024844	3732	Hs.527778	NM_001024844		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
chr19.14156327.-	chr19	14156327	14156328	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13644	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr17.18785202.-	chr17	18785202	18785203	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16420	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr5.68439005.-	chr5	68439005	68439006	-	0	NA	Intergenic	AluY|SINE|Alu	23832	NM_031966	891	Hs.23960	NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
chr5.178658004.-	chr5	178658004	178658005	-	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	-114427	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr12.92086131.+	chr12	92086131	92086132	+	0	NA	Intergenic	AluSx3|SINE|Alu	449358	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr7.5629210.-	chr7	5629210	5629211	-	0	NA	Intergenic	AluJo|SINE|Alu	3226	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr7.33164231.-	chr7	33164231	33164232	-	0	NA	Intergenic	AluYf5|SINE|Alu	4921	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr22.38336386.+	chr22	38336386	38336387	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13268	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr10.28933541.+	chr10	28933541	28933542	+	0	NA	Intergenic	AluSz|SINE|Alu	-32883	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	protein-coding
chr8.144361260.+	chr8	144361260	144361261	+	0	NA	Intergenic	CpG	11653	NM_138465	2738	Hs.400533	NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
chr4.3540631.-	chr4	3540631	3540632	-	0	NA	Intergenic	SVA_D|Other|Other	6407	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr16.84872243.+	chr16	84872243	84872244	+	0	NA	"exon (NM_031476, exon 2 of 15)"	"exon (NM_031476, exon 2 of 15)"	18656	NM_031476	83716	Hs.617091	NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
chr7.64198962.-	chr7	64198962	64198963	-	0	NA	Intergenic	SVA_D|Other|Other	55804	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr3.95220119.-	chr3	95220119	95220120	-	0	NA	Intergenic	AluSx1|SINE|Alu	-181918	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr2.50825274.-	chr2	50825274	50825275	-	0	NA	"intron (NM_004801, intron 8 of 21)"	AluSx1|SINE|Alu	250380	NM_138735	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr19.56567689.+	chr19	56567689	56567690	+	0	NA	"intron (NM_153447, intron 13 of 14)"	AluSx|SINE|Alu	56597	NM_153447	126206	Hs.356872	NM_153447	ENSG00000171487	NLRP5	CLR19.8|MATER|NALP5|PAN11|PYPAF8	"NLR family, pyrin domain containing 5"	protein-coding
chr4.1165833.-	chr4	1165833	1165834	-	0	NA	"exon (NM_001128325, exon 3 of 7)"	"exon (NM_001128325, exon 3 of 7)"	-824	NM_012445	10417	Hs.736956	NM_001128325	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	"spondin 2, extracellular matrix protein"	protein-coding
chr3.172180196.-	chr3	172180196	172180197	-	0	NA	Intergenic	AluY|SINE|Alu	13950	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr17.29030315.+	chr17	29030315	29030316	+	0	NA	Intergenic	AluSx|SINE|Alu	-6311	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
chr8.144512804.-	chr8	144512804	144512805	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	202	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr7.157572269.+	chr7	157572269	157572270	+	0	NA	"intron (NM_130842, intron 11 of 21)"	"intron (NM_130842, intron 11 of 21)"	-75008	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr3.68753639.-	chr3	68753639	68753640	-	0	NA	Intergenic	AluSx3|SINE|Alu	-228122	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr6.123144088.-	chr6	123144088	123144089	-	0	NA	Intergenic	AluY|SINE|Alu	-34117	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr2.85645628.-	chr2	85645628	85645629	-	0	NA	Intergenic	CpG	4431	NM_001256139	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr19.1223849.+	chr19	1223849	1223850	+	0	NA	"intron (NM_000455, intron 8 of 9)"	"intron (NM_000455, intron 8 of 9)"	14141	NM_152769	255057	Hs.346575	NM_152769	ENSG00000099625	C19orf26	DOS	chromosome 19 open reading frame 26	protein-coding
chr22.23001794.+	chr22	23001794	23001795	+	0	NA	Intergenic	L1M4c|LINE|L1	13012	NM_199127	91227	Hs.632765	NM_080839		GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
chr14.54988003.+	chr14	54988003	54988004	+	0	NA	"intron (NM_006568, intron 1 of 5)"	AluSq2|SINE|Alu	11416	NM_006568	10668	Hs.59106	NM_006568	ENSG00000100532	CGRRF1	CGR19|RNF197	cell growth regulator with ring finger domain 1	protein-coding
chr3.42642482.-	chr3	42642482	42642483	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-90	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr10.17622246.-	chr10	17622246	17622247	-	0	NA	Intergenic	AluY|SINE|Alu	-37127	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr6.46742402.-	chr6	46742402	46742403	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18692	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr3.128161153.-	chr3	128161153	128161154	-	0	NA	Intergenic	Intergenic	21284	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr1.9517675.-	chr1	9517675	9517676	-	0	NA	Intergenic	AluJb|SINE|Alu	81853	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr2.239058235.-	chr2	239058235	239058236	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10872	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr7.158670997.-	chr7	158670997	158670998	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21728	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr1.217697508.+	chr1	217697508	217697509	+	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	106901	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr9.133788026.-	chr9	133788026	133788027	-	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	18801	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr7.532200.-	chr7	532200	532201	-	0	NA	Intergenic	Intergenic	-27281	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr9.86597326.+	chr9	86597326	86597327	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1689	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr19.16582296.-	chr19	16582296	16582297	-	0	NA	"intron (NM_001258375, intron 1 of 21)"	CpG	-527	NM_001258374	58513	Hs.742093	NM_001258374	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
chr12.132116762.+	chr12	132116762	132116763	+	0	NA	Intergenic	L1ME1|LINE|L1	-78870	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr12.131551498.-	chr12	131551498	131551499	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98058	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr1.37546477.+	chr1	37546477	37546478	+	0	NA	Intergenic	SVA_D|Other|Other	-46633	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr10.67804002.+	chr10	67804002	67804003	+	0	NA	"intron (NM_013266, intron 15 of 17)"	AluSx|SINE|Alu	-881790	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
chr1.78230570.-	chr1	78230570	78230571	-	0	NA	Intergenic	AluSz|SINE|Alu	5006	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr7.296490.+	chr7	296490	296491	+	0	NA	"intron (NM_020223, intron 6 of 9)"	CpG-23687	-33646	NM_001195127	100288524	Hs.702860	NM_001195127		LOC100288524	-	forkhead box L1-like	protein-coding
chr7.5257647.-	chr7	5257647	5257648	-	0	NA	"intron (NM_001033519, intron 6 of 11)"	"intron (NM_001033519, intron 6 of 11)"	-3747	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr6.149638282.-	chr6	149638282	149638283	-	0	NA	Intergenic	CpG	1154	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr11.64120567.-	chr11	64120567	64120568	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6058	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr21.22013053.-	chr21	22013053	22013054	-	0	NA	Intergenic	AluY|SINE|Alu	-162373	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	miscRNA
chr8.90996715.+	chr8	90996715	90996716	+	0	NA	"intron (NM_002485, intron 1 of 15)"	CpG	184	NM_002485	4683	Hs.492208	NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
chr10.104238486.-	chr10	104238486	104238487	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17316	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr4.49325152.-	chr4	49325152	49325153	-	0	NA	Intergenic	ACRO1|Satellite|acro	-336887	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr19.58125585.-	chr19	58125585	58125586	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	245	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr19.47364554.+	chr19	47364554	47364555	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-10351	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr7.36338588.-	chr7	36338588	36338589	-	0	NA	"intron (NM_030636, intron 7 of 7)"	"intron (NM_030636, intron 7 of 7)"	-68194	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr19.46987863.+	chr19	46987863	46987864	+	0	NA	"intron (NM_001205281, intron 3 of 3)"	AluSx|SINE|Alu	11306	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
chr17.20588546.-	chr17	20588546	20588547	-	0	NA	Intergenic	SVA_D|Other|Other	27213	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr14.83280570.-	chr14	83280570	83280571	-	0	NA	Intergenic	SVA_D|Other|Other	1280365	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr5.14460472.+	chr5	14460472	14460473	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121419	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr6.88118046.-	chr6	88118046	88118047	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-356	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr9.100069755.+	chr9	100069755	100069756	+	0	NA	promoter-TSS (NM_020893)	promoter-TSS (NM_020893)	-155	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
chr19.53979651.-	chr19	53979651	53979652	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8662	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr1.1344585.+	chr1	1344585	1344586	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1892	NM_017971	55052	Hs.182698	NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20	mitochondrial ribosomal protein L20	protein-coding
chr7.17208705.-	chr7	17208705	17208706	-	0	NA	Intergenic	AluY|SINE|Alu	129571	NM_001621	196	Hs.171189	NM_001621	ENSG00000106546	AHR	bHLHe76	aryl hydrocarbon receptor	protein-coding
chr13.50177044.-	chr13	50177044	50177045	-	0	NA	Intergenic	AluY|SINE|Alu	17325	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr7.5244750.-	chr7	5244750	5244751	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9150	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr16.3070202.+	chr16	3070202	3070203	+	0	NA	promoter-TSS (NM_016639)	promoter-TSS (NM_016639)	-111	NM_016639	51330	Hs.355899	NM_016639	ENSG00000006327	TNFRSF12A	CD266|FN14|TWEAKR	"tumor necrosis factor receptor superfamily, member 12A"	protein-coding
chr1.120270211.-	chr1	120270211	120270212	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15792	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr16.49498963.-	chr16	49498963	49498964	-	0	NA	Intergenic	CpG	-91155	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr7.16632862.+	chr7	16632862	16632863	+	0	NA	Intergenic	AluJb|SINE|Alu	52580	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr8.14882299.-	chr8	14882299	14882300	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171280	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr8.142440414.-	chr8	142440414	142440415	-	0	NA	"intron (NM_032611, intron 4 of 4)"	CpG	-8407	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr2.71562036.-	chr2	71562036	71562037	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3151	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chrX.53123313.+	chrX	53123313	53123314	+	0	NA	Intergenic	CpG	11771	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.27595483.-	chr1	27595483	27595484	-	0	NA	"intron (NM_015023, intron 3 of 15)"	AluSx|SINE|Alu	-34476	NM_001276252	23038	Hs.469154	NM_001276252	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
chr6.58778924.+	chr6	58778924	58778925	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-491200	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr10.134034454.-	chr10	134034454	134034455	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34040	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr12.4238415.+	chr12	4238415	4238416	+	0	NA	Intergenic	AluSx|SINE|Alu	-144487	NM_001759	894	Hs.376071	NM_001759	ENSG00000118971	CCND2	KIAK0002	cyclin D2	protein-coding
chr16.89034105.+	chr16	89034105	89034106	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9399	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.101925008.+	chr2	101925008	101925009	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	170	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chrX.15372286.-	chrX	15372286	15372287	-	0	NA	"intron (NR_037859, intron 12 of 14)"	AluY|SINE|Alu	18610	NR_033836	5277	Hs.137154	NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|PIG-A	"phosphatidylinositol glycan anchor biosynthesis, class A"	protein-coding
chr17.7561728.-	chr17	7561728	7561729	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7474	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr16.71571145.-	chr16	71571145	71571146	-	0	NA	"exon (NM_001166395, exon 2 of 2)"	"exon (NM_001166395, exon 2 of 2)"	-10991	NM_001166395	10164	Hs.251383	NM_001166395	ENSG00000140835	CHST4	GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4	protein-coding
chr17.79347587.+	chr17	79347587	79347588	+	0	NA	Intergenic	Intergenic	11573	NM_001272086	100130370	Hs.651390	XM_001714096		LOC100130370	-	uncharacterized LOC100130370	protein-coding
chr2.86777042.+	chr2	86777042	86777043	+	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	13578	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr15.41539563.-	chr15	41539563	41539564	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16126	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr8.142440409.-	chr8	142440409	142440410	-	0	NA	"intron (NM_032611, intron 4 of 4)"	CpG	-8402	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr21.43198251.-	chr21	43198251	43198252	-	0	NA	Intergenic	Intergenic	11002	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr16.72001995.-	chr16	72001995	72001996	-	0	NA	"intron (NM_181536, intron 13 of 29)"	"intron (NM_181536, intron 13 of 29)"	-31882	NM_181536	342372	Hs.675286	NM_181536		PKD1L3	-	polycystic kidney disease 1-like 3	protein-coding
chr11.638940.+	chr11	638940	638941	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1635	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr5.86907870.+	chr5	86907870	86907871	+	0	NA	Intergenic	AluY|SINE|Alu	-199020	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr3.67832233.-	chr3	67832233	67832234	-	0	NA	Intergenic	L1PA7|LINE|L1	127195	NM_001177599	8801	Hs.644919	NM_001177599	ENSG00000172340	SUCLG2	GBETA	"succinate-CoA ligase, GDP-forming, beta subunit"	protein-coding
chr22.28195193.+	chr22	28195193	28195194	+	0	NA	"exon (NM_002430, exon 1 of 2)"	"exon (NM_002430, exon 1 of 2)"	2293	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
chr7.101571940.-	chr7	101571940	101571941	-	0	NA	"intron (NM_001202544, intron 2 of 21)"	AluSg|SINE|Alu	-111058	NM_181552	1523	Hs.191482	NM_001202543	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
chr17.62658727.+	chr17	62658727	62658728	+	0	NA	promoter-TSS (NM_022739)	promoter-TSS (NM_022739)	-341	NM_022739	64750	Hs.743986	NM_022739		SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
chr1.4282124.+	chr1	4282124	4282125	+	0	NA	Intergenic	AluSg7|SINE|Alu	-189987	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	miscRNA
chr2.204121176.+	chr2	204121176	204121177	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18012	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr15.89721781.+	chr15	89721781	89721782	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43141	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr20.36619900.-	chr20	36619900	36619901	-	0	NA	"intron (NM_014657, intron 8 of 8)"	"intron (NM_014657, intron 8 of 8)"	-41933	NM_014657	9675	Hs.655481	NM_014657	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
chr22.51142885.+	chr22	51142885	51142886	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29815	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr12.34501153.+	chr12	34501153	34501154	+	0	NA	Intergenic	GSATII|Satellite|centr	325937	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.171395368.+	chr5	171395368	171395369	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38509	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr7.8008965.-	chr7	8008965	8008966	-	0	NA	"5' UTR (NM_138426, exon 1 of 8)"	"5' UTR (NM_138426, exon 1 of 8)"	-591	NM_138426	113263	Hs.131673	NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced transcript 1	protein-coding
chr2.70133303.-	chr2	70133303	70133304	-	0	NA	TTS (NM_006857)	TTS (NM_006857)	8870	NM_001202514	4084	Hs.468908	NM_001202513	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
chr6.88118014.-	chr6	88118014	88118015	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-324	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr7.5275434.+	chr7	5275434	5275435	+	0	NA	Intergenic	AluSg|SINE|Alu	21534	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr4.48016913.+	chr4	48016913	48016914	+	0	NA	Intergenic	AluY|SINE|Alu	-1878	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chrX.113575461.+	chrX	113575461	113575462	+	0	NA	Intergenic	AluJb|SINE|Alu	-243090	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr1.937264.-	chr1	937264	937265	-	0	NA	Intergenic	CpG-24	1712	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr1.52661757.-	chr1	52661757	52661758	-	0	NA	"intron (NM_004799, intron 1 of 18)"	AluSg|SINE|Alu	-53711	NM_007323	9372	Hs.532345	NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|SARA|SMADIP	"zinc finger, FYVE domain containing 9"	protein-coding
chr8.42888213.-	chr8	42888213	42888214	-	0	NA	Intergenic	SVA_D|Other|Other	23229	NR_033698	2339	Hs.370312	NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	"farnesyltransferase, CAAX box, alpha"	protein-coding
chr15.90470297.+	chr15	90470297	90470298	+	0	NA	Intergenic	AluY|SINE|Alu	-14075	NM_182616	348110	Hs.6734	NM_182616		C15orf38	-	chromosome 15 open reading frame 38	protein-coding
chrX.53111571.+	chrX	53111571	53111572	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	29	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.1663576.-	chr19	1663576	1663577	-	0	NA	Intergenic	AluSp|SINE|Alu	11248	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr7.155191799.-	chr7	155191799	155191800	-	0	NA	Intergenic	Intergenic	59025	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr4.41386512.+	chr4	41386512	41386513	+	0	NA	"intron (NM_001112717, intron 1 of 25)"	AluY|SINE|Alu	23708	NM_001112718	22998	Hs.335163	NM_001112717	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
chr4.989219.-	chr4	989219	989220	-	0	NA	"intron (NM_000203, intron 2 of 13)"	"intron (NM_000203, intron 2 of 13)"	1995	NM_213613	10861	Hs.658244	NM_022042	ENSG00000145217	SLC26A1	EDM4|SAT-1|SAT1	"solute carrier family 26 (sulfate transporter), member 1"	protein-coding
chr10.104238468.-	chr10	104238468	104238469	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17298	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr14.83280579.+	chr14	83280579	83280580	+	0	NA	Intergenic	SVA_D|Other|Other	-1280374	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr1.217314034.+	chr1	217314034	217314035	+	0	NA	Intergenic	Intergenic	-2937	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr16.88074394.+	chr16	88074394	88074395	+	0	NA	"intron (NM_001173541, intron 10 of 11)"	"intron (NM_001173541, intron 10 of 11)"	70770	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr4.13532592.-	chr4	13532592	13532593	-	0	NA	"intron (NR_034054, intron 1 of 3)"	"intron (NR_034054, intron 1 of 3)"	-449	NR_034054	285547	Hs.381892	NR_034054		LOC285547	-	uncharacterized LOC285547	miscRNA
chr3.13697060.-	chr3	13697060	13697061	-	0	NA	"intron (NR_027103, intron 1 of 5)"	CpG	-4839	NR_027103	285375	Hs.319969	NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	miscRNA
chr5.17207867.-	chr5	17207867	17207868	-	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	9065	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr7.1710274.-	chr7	1710274	1710275	-	0	NA	Intergenic	CpG	38524	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr19.6945103.-	chr19	6945103	6945104	-	0	NA	Intergenic	AluY|SINE|Alu	-45754	NR_024075	326342	Hs.688043	NR_024075	ENSG00000268758	EMR4P	EMR4|FIRE|GPR127|PGR16	"egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene"	pseudo
chr7.72991464.-	chr7	72991464	72991465	-	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	-1549	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr1.50571859.-	chr1	50571859	50571860	-	0	NA	promoter-TSS (NM_001144775)	promoter-TSS (NM_001144775)	105	NM_001144775	1996	Hs.213050	NM_001144774	ENSG00000162374	ELAVL4	HUD|PNEM	"ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4"	protein-coding
chr1.160239872.+	chr1	160239872	160239873	+	0	NA	Intergenic	AluJo|SINE|Alu	-7522	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr2.236999636.+	chr2	236999636	236999637	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	77016	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr11.67351042.+	chr11	67351042	67351043	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-24	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr11.44361796.-	chr11	44361796	44361797	-	0	NA	Intergenic	AluJb|SINE|Alu	30080	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr17.74707073.+	chr17	74707073	74707074	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-17	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr12.120856951.-	chr12	120856951	120856952	-	0	NA	Intergenic	AluSz|SINE|Alu	18942	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr20.45935942.+	chr20	45935942	45935943	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11304	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr13.29293201.+	chr13	29293201	29293202	+	0	NA	promoter-TSS (NM_181785)	promoter-TSS (NM_181785)	-51	NM_181785	283537	Hs.117167	NM_001135919	ENSG00000139508	SLC46A3	FKSG16	"solute carrier family 46, member 3"	protein-coding
chr1.183670821.-	chr1	183670821	183670822	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48373	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr18.12006969.-	chr18	12006969	12006970	-	0	NA	"intron (NM_014214, intron 2 of 7)"	AluSx3|SINE|Alu	-25542	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr6.88090573.+	chr6	88090573	88090574	+	0	NA	Intergenic	AluJb|SINE|Alu	-16269	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr1.43189313.-	chr1	43189313	43189314	-	0	NA	Intergenic	AluJr|SINE|Alu	-16612	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr8.107670060.-	chr8	107670060	107670061	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-24	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr2.242744576.-	chr2	242744576	242744577	-	0	NA	TTS (NM_022134)	TTS (NM_022134)	5584	NM_001167600	129807	Hs.551747	NM_001167599	ENSG00000204099	NEU4	-	sialidase 4	protein-coding
chr9.138065624.+	chr9	138065624	138065625	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7831	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr19.42757700.+	chr19	42757700	42757701	+	0	NA	"intron (NM_006494, intron 1 of 3)"	CpG	1609	NM_006494	2077	Hs.655969	NM_006494	ENSG00000105722	ERF	PE-2|PE2	Ets2 repressor factor	protein-coding
chr11.71702919.-	chr11	71702919	71702920	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7039	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr5.178157363.+	chr5	178157363	178157364	+	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	340	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr1.114299515.+	chr1	114299515	114299516	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2262	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr1.97799208.-	chr1	97799208	97799209	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237729	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr7.50673336.-	chr7	50673336	50673337	-	0	NA	"intron (NM_001001549, intron 10 of 14)"	"intron (NM_001001549, intron 10 of 14)"	40182	NM_001082971	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
chr20.61021251.-	chr20	61021251	61021252	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18622	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr14.37053451.+	chr14	37053451	37053452	+	0	NA	Intergenic	CpG	-1665	NM_014360	26257	Hs.234763	NM_014360	ENSG00000136327	NKX2-8	NKX2.8|NKX2H|Nkx2-9	NK2 homeobox 8	protein-coding
chr19.18180382.+	chr19	18180382	18180383	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17315	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr10.120946143.-	chr10	120946143	120946144	-	0	NA	Intergenic	AluY|SINE|Alu	7798	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr1.54775815.-	chr1	54775815	54775816	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-96164	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr7.1587782.+	chr7	1587782	1587783	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8284	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr9.35846383.-	chr9	35846383	35846384	-	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	13888	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr2.242500495.+	chr2	242500495	242500496	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1937	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr12.75694190.-	chr12	75694190	75694191	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29646	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr9.26387244.+	chr9	26387244	26387245	+	0	NA	Intergenic	AluY|SINE|Alu	320571	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr1.65129087.-	chr1	65129087	65129088	-	0	NA	"intron (NM_020925, intron 13 of 26)"	AluY|SINE|Alu	81691	NM_018211	55225	Hs.591443	NM_018716	ENSG00000162437	RAVER2	-	"ribonucleoprotein, PTB-binding 2"	protein-coding
chr19.1045732.+	chr19	1045732	1045733	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5630	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr11.65219127.+	chr11	65219127	65219128	+	0	NA	Intergenic	SVA_D|Other|Other	7198	NR_030343	693197		NR_030343	ENSG00000207727	MIR612	MIRN612|hsa-mir-612	microRNA 612	miscRNA
chr9.35846389.+	chr9	35846389	35846390	+	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	-13882	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr6.170055357.-	chr6	170055357	170055358	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46802	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr7.51090129.-	chr7	51090129	51090130	-	0	NA	"intron (NM_015198, intron 12 of 12)"	"intron (NM_015198, intron 12 of 12)"	228970	NM_001001555	2887	Hs.164060	NM_001001549	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
chr2.177012541.+	chr2	177012541	177012542	+	0	NA	Intergenic	CpG	-2490	NR_029609	406903		NR_029609	ENSG00000207744	MIR10B	MIRN10B|hsa-mir-10b|miRNA10B|mir-10b	microRNA 10b	miscRNA
chr5.1815639.+	chr5	1815639	1815640	+	0	NA	"intron (NM_004553, intron 3 of 3)"	"intron (NM_004553, intron 3 of 3)"	14143	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr10.133203408.-	chr10	133203408	133203409	-	0	NA	Intergenic	Intergenic	93424	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chrM.802.+	chrM	802	803	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr13.114428364.-	chr13	114428364	114428365	-	0	NA	"intron (NM_002929, intron 4 of 6)"	CpG	-25698	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr10.74555520.-	chr10	74555520	74555521	-	0	NA	"intron (NR_073062, intron 3 of 9)"	AluSg|SINE|Alu	-74733	NR_039823	100616286		NR_039823		MIR4676	-	microRNA 4676	miscRNA
chr18.63211121.+	chr18	63211121	63211122	+	0	NA	Intergenic	AluY|SINE|Alu	-206367	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr5.3188298.+	chr5	3188298	3188299	+	0	NA	Intergenic	CpG	347910	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr2.44058989.-	chr2	44058989	44058990	-	0	NA	"exon (NM_022436, exon 4 of 13)"	"exon (NM_022436, exon 4 of 13)"	-6969	NM_022436	64240	Hs.132992	NM_022436	ENSG00000138075	ABCG5	STSL	"ATP-binding cassette, sub-family G (WHITE), member 5"	protein-coding
chr3.57630913.-	chr3	57630913	57630914	-	0	NA	"intron (NM_152678, intron 11 of 19)"	AluSg|SINE|Alu	47698	NM_001660	378	Hs.652183	NM_001660	ENSG00000168374	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
chr7.5345651.-	chr7	5345651	5345652	-	0	NA	TTS (NM_001080495)	TTS (NM_001080495)	-23090	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr16.84754589.+	chr16	84754589	84754590	+	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	21034	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr1.27503595.+	chr1	27503595	27503596	+	0	NA	Intergenic	Intergenic	-21974	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr5.178157719.-	chr5	178157719	178157720	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	16	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr3.81337965.+	chr3	81337965	81337966	+	0	NA	Intergenic	AluY|SINE|Alu	472985	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr2.70141639.+	chr2	70141639	70141640	+	0	NA	promoter-TSS (NM_002357)	promoter-TSS (NM_002357)	-534	NM_001202514	4084	Hs.468908	NM_001202513	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
chr1.62954862.-	chr1	62954862	62954863	-	0	NA	"intron (NM_001272000, intron 40 of 48)"	AluY|SINE|Alu	-52479	NM_003368	7398	Hs.35086	NM_001017415	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
chr2.242447251.-	chr2	242447251	242447252	-	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	-524	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr19.7671442.-	chr19	7671442	7671443	-	0	NA	"exon (NM_020902, exon 4 of 17)"	"exon (NM_020902, exon 4 of 17)"	-10654	NM_001080429	57662	Hs.17686	NM_001080429	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA	"calmodulin regulated spectrin-associated protein family, member 3"	protein-coding
chr22.32340220.+	chr22	32340220	32340221	+	0	NA	promoter-TSS (NM_003405)	promoter-TSS (NM_003405)	-259	NM_003405	7533	Hs.226755	NM_003405	ENSG00000128245	YWHAH	YWHA1	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide"	protein-coding
chr1.54775809.+	chr1	54775809	54775810	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96170	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chrX.86721053.+	chrX	86721053	86721054	+	0	NA	Intergenic	SVA_C|Other|Other	-51662	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr15.74266288.-	chr15	74266288	74266289	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-18401	NM_001256675	9399	Hs.194816	NM_001256672	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
chr3.52918415.+	chr3	52918415	52918416	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13182	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr14.102101581.+	chr14	102101581	102101582	+	0	NA	Intergenic	CpG	73893	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr9.36860055.-	chr9	36860055	36860056	-	0	NA	"intron (NM_016734, intron 8 of 9)"	AluSg|SINE|Alu	-4250	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr8.124553732.+	chr8	124553732	124553733	+	0	NA	promoter-TSS (NM_001242463)	promoter-TSS (NM_001242463)	-239	NM_001242463	114907	Hs.403933	NM_001242463	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
chr6.93408710.+	chr6	93408710	93408711	+	0	NA	Intergenic	AluY|SINE|Alu	720590	NM_004440	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK3|HEK11	EPH receptor A7	protein-coding
chr17.8252953.-	chr17	8252953	8252954	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9765	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr7.5355900.-	chr7	5355900	5355901	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	-33339	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr11.124622298.+	chr11	124622298	124622299	+	0	NA	promoter-TSS (NM_014312)	promoter-TSS (NM_014312)	-189	NM_014312	23584	Hs.112377	NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
chr6.4018688.+	chr6	4018688	4018689	+	0	NA	Intergenic	CpG	-2881	NM_003913	8899	Hs.159014	NM_003913	ENSG00000112739	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	PRP4 pre-mRNA processing factor 4 homolog B (yeast)	protein-coding
chr14.102983869.+	chr14	102983869	102983870	+	0	NA	Intergenic	CpG	-7741	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr19.17434556.+	chr19	17434556	17434557	+	0	NA	TTS (NM_024050)	TTS (NM_024050)	11082	NM_020959	57719	Hs.590990	NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
chr19.49161526.-	chr19	49161526	49161527	-	0	NA	"intron (NR_004401, intron 1 of 4)"	AluY|SINE|Alu	12075	NM_001217	770	Hs.428446	NM_001217	ENSG00000063180	CA11	CARPX1	carbonic anhydrase XI	protein-coding
chr9.33194253.+	chr9	33194253	33194254	+	0	NA	Intergenic	AluY|SINE|Alu	-26897	NM_001497	2683	Hs.272011	NM_001497	ENSG00000086062	B4GALT1	B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1	"UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1"	protein-coding
chr5.176292926.+	chr5	176292926	176292927	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33407	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr1.115078617.-	chr1	115078617	115078618	-	0	NA	Intergenic	Intergenic	24836	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chr2.71357870.+	chr2	71357870	71357871	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	426	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr9.37800533.-	chr9	37800533	37800534	-	0	NA	promoter-TSS (NM_024345)	promoter-TSS (NM_024345)	257	NM_024345	79269	Hs.118394	NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
chr12.94945453.+	chr12	94945453	94945454	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10112	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr8.22594673.-	chr8	22594673	22594674	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43858	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr8.41166076.-	chr8	41166076	41166077	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-914	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr7.158790499.+	chr7	158790499	158790500	+	0	NA	Intergenic	Intergenic	-10546	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr6.158700258.+	chr6	158700258	158700259	+	0	NA	Intergenic	AluY|SINE|Alu	-33434	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr14.103988574.+	chr14	103988574	103988575	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	622	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr16.1845129.+	chr16	1845129	1845130	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-220	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr5.150400050.+	chr5	150400050	150400051	+	0	NA	promoter-TSS (NM_002084)	promoter-TSS (NM_002084)	51	NM_002084	2878	Hs.386793	NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3 (plasma)	protein-coding
chr12.49857014.-	chr12	49857014	49857015	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-74057	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr10.11784965.+	chr10	11784965	11784966	+	0	NA	"intron (NM_024693, intron 1 of 4)"	"intron (NM_024693, intron 1 of 4)"	609	NM_024693	79746	Hs.22242	NM_024693	ENSG00000134463	ECHDC3	-	enoyl CoA hydratase domain containing 3	protein-coding
chr11.45810274.+	chr11	45810274	45810275	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15349	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr20.34266407.+	chr20	34266407	34266408	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13529	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr8.57906157.+	chr8	57906157	57906158	+	0	NA	"5' UTR (NM_017813, exon 1 of 5)"	"5' UTR (NM_017813, exon 1 of 5)"	273	NM_017813	54928	Hs.744053	NM_017813	ENSG00000104331	IMPAD1	GPAPP|IMP 3|IMP-3|IMPA3	inositol monophosphatase domain containing 1	protein-coding
chr6.111303158.-	chr6	111303158	111303159	-	0	NA	promoter-TSS (NM_032194)	promoter-TSS (NM_032194)	133	NM_032194	84154	Hs.372265	NM_032194		RPF2	BXDC1|bA397G5.4	ribosome production factor 2 homolog (S. cerevisiae)	protein-coding
chr16.671279.+	chr16	671279	671280	+	0	NA	"intron (NM_001172663, intron 4 of 6)"	"intron (NM_001172663, intron 4 of 6)"	-9733	NM_053284	117166	Hs.345818	NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	"WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1"	protein-coding
chr15.100514129.-	chr15	100514129	100514130	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	166997	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr16.68405226.+	chr16	68405226	68405227	+	0	NA	"exon (NM_018667, exon 3 of 9)"	"exon (NM_018667, exon 3 of 9)"	60349	NM_019023	54496	Hs.653193	NM_001184824	ENSG00000132600	PRMT7	-	protein arginine methyltransferase 7	protein-coding
chr1.43189466.-	chr1	43189466	43189467	-	0	NA	Intergenic	Intergenic	-16459	NM_148960	149461	Hs.496270	NM_001123395	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
chr17.35829269.-	chr17	35829269	35829270	-	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	20682	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chr10.104238489.+	chr10	104238489	104238490	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17319	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr17.73439480.-	chr17	73439480	73439481	-	0	NA	Intergenic	AluSg4|SINE|Alu	13184	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr14.105242419.+	chr14	105242419	105242420	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17519	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr8.96095114.+	chr8	96095114	96095115	+	0	NA	Intergenic	AluY|SINE|Alu	-9890	NR_037484	100500907		NR_037484	ENSG00000265256	MIR3150B	-	microRNA 3150b	miscRNA
chr12.8830977.-	chr12	8830977	8830978	-	0	NA	Intergenic	AluSp|SINE|Alu	15544	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr4.134726997.+	chr4	134726997	134726998	+	0	NA	Intergenic	AluY|SINE|Alu	395906	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	"poly(A) binding protein, cytoplasmic 4-like"	protein-coding
chr4.77348125.-	chr4	77348125	77348126	-	0	NA	Intergenic	AluY|SINE|Alu	8128	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr9.116102480.-	chr9	116102480	116102481	-	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	-140	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr21.47403507.-	chr21	47403507	47403508	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1844	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr19.644306.+	chr19	644306	644307	+	0	NA	TTS (NM_020637)	TTS (NM_020637)	4380	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr2.62612388.+	chr2	62612388	62612389	+	0	NA	Intergenic	AluSg|SINE|Alu	121216	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr16.924580.+	chr16	924580	924581	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69137	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr8.28449372.-	chr8	28449372	28449373	-	0	NA	Intergenic	AluSg4|SINE|Alu	86673	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	miscRNA
chr17.78559383.-	chr17	78559383	78559384	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40758	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr1.6051329.+	chr1	6051329	6051330	+	0	NA	"intron (NM_015102, intron 1 of 29)"	"intron (NM_015102, intron 1 of 29)"	-1029	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr10.35223730.-	chr10	35223730	35223731	-	0	NA	Intergenic	AluSx4|SINE|Alu	119477	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr6.168204767.-	chr6	168204767	168204768	-	0	NA	Intergenic	Intergenic	7228	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr22.50959127.-	chr22	50959127	50959128	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4906	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr1.16698119.+	chr1	16698119	16698120	+	0	NA	"intron (NR_073500, intron 1 of 1)"	AluY|SINE|Alu	4594	NR_073500	26099	Hs.252967	NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
chr6.165205840.-	chr6	165205840	165205841	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517271	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr2.29033007.-	chr2	29033007	29033008	-	0	NA	promoter-TSS (NM_001142634)	promoter-TSS (NM_001142634)	693	NM_182756	245711	Hs.511956	NM_001008779	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy homolog A (Xenopus laevis)	protein-coding
chr8.145808476.-	chr8	145808476	145808477	-	0	NA	"intron (NM_025251, intron 3 of 12)"	"intron (NM_025251, intron 3 of 12)"	-30412	NM_025251	80728	Hs.148988	NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
chr18.2377793.+	chr18	2377793	2377794	+	0	NA	Intergenic	AluSg7|SINE|Alu	193696	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr20.34266397.-	chr20	34266397	34266398	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13519	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr13.111268305.-	chr13	111268305	111268306	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-374	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr1.171662957.+	chr1	171662957	171662958	+	0	NA	Intergenic	SVA_C|Other|Other	-41184	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr19.411332.+	chr19	411332	411333	+	0	NA	Intergenic	Intergenic	-2162	NM_001136263	126567	Hs.223770	NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium-dependent domain containing 4C	protein-coding
chr1.2887339.-	chr1	2887339	2887340	-	0	NA	Intergenic	Intergenic	50707	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr16.88851517.-	chr16	88851517	88851518	-	0	NA	promoter-TSS (NM_001142864)	promoter-TSS (NM_001142864)	145	NM_001142864	9780	Hs.592074	NM_001142864	ENSG00000103335	PIEZO1	FAM38A|Mib	piezo-type mechanosensitive ion channel component 1	protein-coding
chr2.240371803.+	chr2	240371803	240371804	+	0	NA	Intergenic	SVA_D|Other|Other	-49160	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr2.100938160.+	chr2	100938160	100938161	+	0	NA	"exon (NM_198461, exon 1 of 12)"	"exon (NM_198461, exon 1 of 12)"	1035	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
chr2.43254183.-	chr2	43254183	43254184	-	0	NA	Intergenic	Intergenic	-199562	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr9.130867512.+	chr9	130867512	130867513	+	0	NA	"intron (NM_001265614, intron 6 of 10)"	AluSx1|SINE|Alu	6751	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr19.58250073.+	chr19	58250073	58250074	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8091	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr12.129892276.-	chr12	129892276	129892277	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-495936	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr7.155246286.-	chr7	155246286	155246287	-	0	NA	Intergenic	Intergenic	4538	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr11.64837503.+	chr11	64837503	64837504	+	0	NA	Intergenic	Intergenic	-11494	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chrX.27178526.-	chrX	27178526	27178527	-	0	NA	Intergenic	AluY|SINE|Alu	-302932	NR_002784	139420	Hs.350673	NR_002784		SMEK3P	FLFL3P|smk1	"SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene"	pseudo
chrX.30619902.+	chrX	30619902	30619903	+	0	NA	Intergenic	SVA_F|Other|Other	-23869	NM_025159	80231	Hs.665009	NM_025159	ENSG00000120280	CXorf21	-	chromosome X open reading frame 21	protein-coding
chr19.7599275.-	chr19	7599275	7599276	-	0	NA	promoter-TSS (NM_001166111)	promoter-TSS (NM_001166111)	-147	NM_001166112	10908	Hs.631863	NM_001166111	ENSG00000032444	PNPLA6	NTE|NTEMND|SPG39|iPLA2delta|sws	patatin-like phospholipase domain containing 6	protein-coding
chr3.36421971.-	chr3	36421971	36421972	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	126	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr2.120282017.+	chr2	120282017	120282018	+	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	11	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr13.21644837.-	chr13	21644837	21644838	-	0	NA	Intergenic	AluSx|SINE|Alu	9115	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr4.97305985.-	chr4	97305985	97305986	-	0	NA	Intergenic	AluY|SINE|Alu	-544746	NM_005390	5161	Hs.131361	NM_005390	ENSG00000163114	PDHA2	PDHAL	pyruvate dehydrogenase (lipoamide) alpha 2	protein-coding
chr1.209280850.+	chr1	209280850	209280851	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-321318	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
chr11.64879550.+	chr11	64879550	64879551	+	0	NA	TTS (NM_013265)	TTS (NM_013265)	224	NM_003273	7108	Hs.31130	NM_001277233	ENSG00000149809	TM7SF2	ANG1|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
chr3.183052362.-	chr3	183052362	183052363	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81330	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr7.1474649.+	chr7	1474649	1474650	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24460	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr17.59482744.+	chr17	59482744	59482745	+	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	5487	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr4.26862490.-	chr4	26862490	26862491	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-177	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr21.47838707.-	chr21	47838707	47838708	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40155	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr7.5595639.+	chr7	5595639	5595640	+	0	NA	Intergenic	CpG	-25407	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr16.68080843.+	chr16	68080843	68080844	+	0	NA	"intron (NM_001271762, intron 2 of 15)"	AluY|SINE|Alu	-23073	NM_018380	55794	Hs.458313	NM_018380	ENSG00000182810	DDX28	MDDX28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding
chr9.425346.+	chr9	425346	425347	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44948	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr8.143373427.+	chr8	143373427	143373428	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93710	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr7.36403814.+	chr7	36403814	36403815	+	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	2968	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr11.69589276.+	chr11	69589276	69589277	+	0	NA	"intron (NM_002007, intron 1 of 2)"	CpG	895	NM_002007	2249	Hs.1755	NM_002007	ENSG00000075388	FGF4	HBGF-4|HST|HST-1|HSTF1|K-FGF|KFGF	fibroblast growth factor 4	protein-coding
chr11.17116981.-	chr11	17116981	17116982	-	0	NA	"intron (NM_002645, intron 26 of 31)"	AluY|SINE|Alu	17761	NM_001017	6207	Hs.446588	NM_001017	ENSG00000110700	RPS13	S13	ribosomal protein S13	protein-coding
chr1.149646743.-	chr1	149646743	149646744	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70290	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr9.7934826.-	chr9	7934826	7934827	-	0	NA	Intergenic	AluY|SINE|Alu	135027	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr8.99151369.+	chr8	99151369	99151370	+	0	NA	"intron (NM_001145860, intron 9 of 15)"	AluSx1|SINE|Alu	21301	NM_015029	10940	Hs.252828	NM_001145860	ENSG00000104356	POP1	-	"processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)"	protein-coding
chr5.24116821.-	chr5	24116821	24116822	-	0	NA	Intergenic	AluY|SINE|Alu	-528264	NM_006727	1008	Hs.92489	NM_006727	ENSG00000040731	CDH10	-	"cadherin 10, type 2 (T2-cadherin)"	protein-coding
chr1.32122139.+	chr1	32122139	32122140	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11301	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr11.122763320.+	chr11	122763320	122763321	+	0	NA	"intron (NM_024806, intron 2 of 8)"	AluSc8|SINE|Alu	9847	NM_199124	79864	Hs.164705	NM_024806	ENSG00000109944	C11orf63	-	chromosome 11 open reading frame 63	protein-coding
chr4.131425841.-	chr4	131425841	131425842	-	0	NA	Intergenic	AluY|SINE|Alu	-1408559	NM_001099783	132321	Hs.567679	NM_001099783	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
chr19.47364603.+	chr19	47364603	47364604	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10400	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr9.123743164.+	chr9	123743164	123743165	+	0	NA	"intron (NM_001735, intron 27 of 40)"	AluY|SINE|Alu	-51713	NM_001190945	7185	Hs.531251	NM_001190945	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor-associated factor 1	protein-coding
chr1.2887368.-	chr1	2887368	2887369	-	0	NA	Intergenic	Intergenic	50678	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr4.4134556.+	chr4	4134556	4134557	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	94065	NM_177998	133060	Hs.534544	NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
chr3.13149420.-	chr3	13149420	13149421	-	0	NA	Intergenic	Intergenic	34803	NM_001134382	9922	Hs.475506	NM_001134382	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
chr12.112161134.+	chr12	112161134	112161135	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37277	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr2.120964343.+	chr2	120964343	120964344	+	0	NA	Intergenic	Intergenic	16641	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr11.72160517.+	chr11	72160517	72160518	+	0	NA	Intergenic	AluY|SINE|Alu	-14793	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr14.105242401.+	chr14	105242401	105242402	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17537	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chrY.15683484.-	chrY	15683484	15683485	-	0	NA	Intergenic	AluYb8|SINE|Alu	90934	NR_047601	7404	Hs.115277	NM_001258249	ENSG00000183878	UTY	UTY1	"ubiquitously transcribed tetratricopeptide repeat containing, Y-linked"	protein-coding
chr11.126081376.-	chr11	126081376	126081377	-	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	-211	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr11.776991.-	chr11	776991	776992	-	0	NA	"intron (NM_182612, intron 1 of 7)"	CpG	-496	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr1.153574092.+	chr1	153574092	153574093	+	0	NA	Intergenic	AluY|SINE|Alu	11422	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr1.2622066.-	chr1	2622066	2622067	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	57585	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr16.31103096.+	chr16	31103096	31103097	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2966	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr17.42774511.-	chr17	42774511	42774512	-	0	NA	Intergenic	AluY|SINE|Alu	7346	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chr16.3778842.-	chr16	3778842	3778843	-	0	NA	"exon (NM_004380, exon 31 of 31)"	"exon (NM_004380, exon 31 of 31)"	11244	NM_001272049	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr17.43025030.+	chr17	43025030	43025031	+	0	NA	promoter-TSS (NM_001264573)	promoter-TSS (NM_001264573)	49	NM_001265577	146909	Hs.135094	NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
chr6.42341715.-	chr6	42341715	42341716	-	0	NA	"intron (NM_033502, intron 2 of 17)"	AluSc5|SINE|Alu	-78068	NM_033502	55809	Hs.485392	NM_033502	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|RP1-139D8.5|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
chr2.237068287.+	chr2	237068287	237068288	+	0	NA	Intergenic	CpG	8365	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr9.719219.+	chr9	719219	719220	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12413	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr1.65532954.-	chr1	65532954	65532955	-	0	NA	Intergenic	CpG	8763	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr13.114932183.+	chr13	114932183	114932184	+	0	NA	Intergenic	Intergenic	-34088	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr1.178740179.-	chr1	178740179	178740180	-	0	NA	"intron (NM_152663, intron 1 of 19)"	AluSq|SINE|Alu	-45879	NM_152663	55103	Hs.632485	NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
chr6.159416875.+	chr6	159416875	159416876	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4323	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chrX.141491522.-	chrX	141491522	141491523	-	0	NA	Intergenic	AluY|SINE|Alu	198446	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr17.78559344.-	chr17	78559344	78559345	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40719	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr1.227498645.+	chr1	227498645	227498646	+	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	7181	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chrY.13488494.-	chrY	13488494	13488495	-	0	NA	Intergenic	CpG	-1044895	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr11.5623430.-	chr11	5623430	5623431	-	0	NA	"intron (NM_001198645, intron 1 of 5)"	AluY|SINE|Alu	-5565	NM_001003818	117854	Hs.729048	NM_001003818	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
chr4.1210669.+	chr4	1210669	1210670	+	0	NA	"intron (NM_001012614, intron 5 of 9)"	"intron (NM_001012614, intron 5 of 9)"	-7919	NR_024569	100130872	Hs.302963	NR_024569		LOC100130872	-	uncharacterized LOC100130872	miscRNA
chr7.5257644.-	chr7	5257644	5257645	-	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	-3744	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr9.95350829.-	chr9	95350829	95350830	-	0	NA	"intron (NM_001012267, intron 5 of 7)"	AluY|SINE|Alu	29503	NR_036505	100128361	Hs.660395	NR_036505		LOC100128361	-	uncharacterized LOC100128361	miscRNA
chr1.211468038.+	chr1	211468038	211468039	+	0	NA	"intron (NM_001136225, intron 8 of 10)"	AluY|SINE|Alu	-31919	NM_004619	7188	Hs.523930	NM_001033910	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor-associated factor 5	protein-coding
chr20.3879969.+	chr20	3879969	3879970	+	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	9506	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr5.178287399.-	chr5	178287399	178287400	-	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	-445	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr19.2187824.-	chr19	2187824	2187825	-	0	NA	"intron (NM_032482, intron 3 of 27)"	AluY|SINE|Alu	-23676	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr1.78230552.+	chr1	78230552	78230553	+	0	NA	Intergenic	AluSz|SINE|Alu	-4988	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr19.23474395.+	chr19	23474395	23474396	+	0	NA	Intergenic	AluSx|SINE|Alu	-41223	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr6.168395120.+	chr6	168395120	168395121	+	0	NA	Intergenic	AluSx|SINE|Alu	-17501	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr7.1474519.+	chr7	1474519	1474520	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24590	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr1.101274534.+	chr1	101274534	101274535	+	0	NA	Intergenic	AluSx|SINE|Alu	86201	NM_001261442	2135	Hs.357637	NM_001033025	ENSG00000162694	EXTL2	EXTR2	exostosin-like glycosyltransferase 2	protein-coding
chr1.32122082.+	chr1	32122082	32122083	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11244	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr17.79962686.-	chr17	79962686	79962687	-	0	NA	"intron (NR_045351, intron 6 of 14)"	"intron (NR_045351, intron 6 of 14)"	-18099	NM_144998	201254	Hs.37616	NM_001271006	ENSG00000169689	STRA13	CENP-X|FAAP10|MHF2	stimulated by retinoic acid 13	protein-coding
chr11.68608900.+	chr11	68608900	68608901	+	0	NA	"intron (NM_001031847, intron 1 of 18)"	CpG	499	NM_001876	1374	Hs.503043	NM_001031847	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A (liver)	protein-coding
chr2.232202262.+	chr2	232202262	232202263	+	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	-25157	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr2.69470150.-	chr2	69470150	69470151	-	0	NA	"intron (NM_032208, intron 17 of 17)"	"intron (NM_032208, intron 17 of 17)"	-139336	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	miscRNA
chr17.1953069.-	chr17	1953069	1953070	-	0	NA	TTS (NR_029674)	TTS (NR_029674)	-233	NR_029674	406921		NR_029674	ENSG00000207724	MIR132	MIRN132|miRNA132	microRNA 132	miscRNA
chr20.4729575.-	chr20	4729575	4729576	-	0	NA	Intergenic	Intergenic	8261	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr13.114001920.-	chr13	114001920	114001921	-	0	NA	"intron (NM_024719, intron 4 of 7)"	"intron (NM_024719, intron 4 of 7)"	-16543	NM_024719	79774	Hs.170904	NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
chr20.61885467.+	chr20	61885467	61885468	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	137	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr21.47838728.+	chr21	47838728	47838729	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40134	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr10.134684085.-	chr10	134684085	134684086	-	0	NA	"intron (NM_001200049, intron 32 of 57)"	Tigger1|DNA|TcMar-Tigger	-72004	NM_001200049	54777	Hs.719815	NM_001200049	ENSG00000171811	TTC40	C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	tetratricopeptide repeat domain 40	protein-coding
chr5.134802619.+	chr5	134802619	134802620	+	0	NA	Intergenic	Intergenic	-14530	NM_001099221	497189	Hs.552091	NM_001099221		TIFAB	-	"TRAF-interacting protein with forkhead-associated domain, family member B"	protein-coding
chr3.36421968.-	chr3	36421968	36421969	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	129	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr16.1195675.-	chr16	1195675	1195676	-	0	NA	Intergenic	Intergenic	7566	NM_021098	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr2.19132827.-	chr2	19132827	19132828	-	0	NA	Intergenic	AluYk4|SINE|Alu	361981	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chrX.112142818.+	chrX	112142818	112142819	+	0	NA	Intergenic	AluY|SINE|Alu	-58775	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr7.810957.-	chr7	810957	810958	-	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	43644	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr6.45365000.-	chr6	45365000	45365001	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19212	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr4.8161357.+	chr4	8161357	8161358	+	0	NA	promoter-TSS (NM_001130084)	promoter-TSS (NM_001130084)	-798	NM_001130088	84448	Hs.233404	NM_001130083	ENSG00000163995	ABLIM2	-	"actin binding LIM protein family, member 2"	protein-coding
chr10.14719538.+	chr10	14719538	14719539	+	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	97358	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr7.95234866.+	chr7	95234866	95234867	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8941	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr22.19172037.+	chr22	19172037	19172038	+	0	NA	"intron (NM_001835, intron 28 of 31)"	"intron (NM_001835, intron 28 of 31)"	-5699	NR_046298	6576	Hs.111024	NM_001256534	ENSG00000100075	SLC25A1	CTP|SEA|SLC20A3	"solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1"	protein-coding
chr2.62740970.+	chr2	62740970	62740971	+	0	NA	Intergenic	AluY|SINE|Alu	-7366	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
chr2.240401987.+	chr2	240401987	240401988	+	0	NA	Intergenic	Intergenic	-79344	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr1.32122101.-	chr1	32122101	32122102	-	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	11263	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chr2.27526301.-	chr2	27526301	27526302	-	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	-4829	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr1.1463914.+	chr1	1463914	1463915	+	0	NA	"intron (NM_001170535, intron 14 of 15)"	"intron (NM_001170535, intron 14 of 15)"	11826	NM_001114748	339453	Hs.668654	NM_001114748		TMEM240	C1orf70	transmembrane protein 240	protein-coding
chr21.20831255.+	chr21	20831255	20831256	+	0	NA	Intergenic	AluYf4|SINE|Alu	-1055285	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chr8.107670053.+	chr8	107670053	107670054	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	17	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr12.131509517.+	chr12	131509517	131509518	+	0	NA	"intron (NM_198827, intron 13 of 24)"	"intron (NM_198827, intron 13 of 24)"	71065	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr1.1822857.-	chr1	1822857	1822858	-	0	NA	promoter-TSS (NM_002074)	promoter-TSS (NM_002074)	331	NM_002074	2782	Hs.430425	NM_002074	ENSG00000078369	GNB1	-	"guanine nucleotide binding protein (G protein), beta polypeptide 1"	protein-coding
chr15.93372505.-	chr15	93372505	93372506	-	0	NA	Intergenic	AluSg|SINE|Alu	-33791	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr6.88118023.-	chr6	88118023	88118024	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-333	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr11.63286749.+	chr11	63286749	63286750	+	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	11290	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr17.4488407.+	chr17	4488407	4488408	+	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	573	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr17.8252962.-	chr17	8252962	8252963	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9774	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr15.91370835.-	chr15	91370835	91370836	-	0	NA	Intergenic	AluSz|SINE|Alu	41050	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr16.4835269.-	chr16	4835269	4835270	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSx|SINE|Alu	3129	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr2.198058489.-	chr2	198058489	198058490	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117032	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr12.132353188.+	chr12	132353188	132353189	+	0	NA	Intergenic	Intergenic	-26091	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr7.5703154.-	chr7	5703154	5703155	-	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	-16938	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr3.50653502.+	chr3	50653502	50653503	+	0	NA	"intron (NM_001243926, intron 3 of 12)"	"intron (NM_001243926, intron 3 of 12)"	-1060	NM_004635	7867	Hs.735013	NM_001243925	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MK-3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding
chr16.3755346.+	chr16	3755346	3755347	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12252	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr9.8858120.+	chr9	8858120	8858121	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124174	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr4.1721002.+	chr4	1721002	1721003	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	2082	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr19.43805641.-	chr19	43805641	43805642	-	0	NA	Intergenic	Intergenic	31959	NM_002784	5678	Hs.502092	NM_002784	ENSG00000183668	PSG9	PS34|PSBG-11|PSBG-9|PSG11|PSGII	pregnancy specific beta-1-glycoprotein 9	protein-coding
chr9.72101704.-	chr9	72101704	72101705	-	0	NA	"intron (NM_001163, intron 2 of 12)"	"intron (NM_001163, intron 2 of 12)"	-157463	NM_004816	9413	Hs.118003	NM_001127608	ENSG00000135063	FAM189A2	C9orf61|RP11-548B3.1|X123	"family with sequence similarity 189, member A2"	protein-coding
chrY.9930615.-	chrY	9930615	9930616	-	0	NA	Intergenic	CpG	-182208	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr17.65335502.-	chr17	65335502	65335503	-	0	NA	Intergenic	AluSx|SINE|Alu	-27219	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr12.51681493.-	chr12	51681493	51681494	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17291	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr10.76198262.-	chr10	76198262	76198263	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262015	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr8.19626692.-	chr8	19626692	19626693	-	0	NA	Intergenic	AluSx1|SINE|Alu	48226	NM_018142	55174	Hs.512627	NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
chrM.16338.+	chrM	16338	16339	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.32731912.+	chr1	32731912	32731913	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7800	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr10.32238982.+	chr10	32238982	32238983	+	0	NA	Intergenic	AluY|SINE|Alu	-21178	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr3.164119673.+	chr3	164119673	164119674	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676610	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr2.58008298.+	chr2	58008298	58008299	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265479	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr15.40733859.+	chr15	40733859	40733860	+	0	NA	"intron (NM_014952, intron 1 of 6)"	CpG	448	NM_014952	22893	Hs.22109	NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
chrX.145183608.+	chrX	145183608	145183609	+	0	NA	Intergenic	AluJb|SINE|Alu	-74218	NR_030581	100126341		NR_030581	ENSG00000216056	MIR891A	MIRN891A	microRNA 891a	miscRNA
chr9.35846406.+	chr9	35846406	35846407	+	0	NA	"intron (NM_016446, intron 9 of 10)"	CpG	-13865	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr12.77339560.-	chr12	77339560	77339561	-	0	NA	Intergenic	AluY|SINE|Alu	66761	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr8.128328697.+	chr8	128328697	128328698	+	0	NA	Intergenic	Intergenic	-99160	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr16.68158316.-	chr16	68158316	68158317	-	0	NA	"intron (NM_004555, intron 2 of 10)"	"intron (NM_004555, intron 2 of 10)"	-39047	NM_004555	4775	Hs.436585	NM_004555	ENSG00000072736	NFATC3	NFAT4|NFATX	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3"	protein-coding
chr1.21893074.-	chr1	21893074	21893075	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57216	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr6.165953184.+	chr6	165953184	165953185	+	0	NA	"intron (NR_045597, intron 3 of 22)"	AluSz|SINE|Alu	122404	NM_001130690	10846	Hs.348762	NM_001130690	ENSG00000112541	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
chr3.160673516.-	chr3	160673516	160673517	-	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	-149167	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr16.30960871.-	chr16	30960871	30960872	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-466	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr3.126260592.+	chr3	126260592	126260593	+	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	17166	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr12.120959444.+	chr12	120959444	120959445	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7520	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr2.87016592.-	chr2	87016592	87016593	-	0	NA	"intron (NM_001768, intron 3 of 5)"	CpG-15196	-2245	NM_171827	925	Hs.85258	NM_001145873	ENSG00000153563	CD8A	CD8|Leu2|MAL|p32	CD8a molecule	protein-coding
chr19.58175926.-	chr19	58175926	58175927	-	0	NA	Intergenic	CpG	4377	NM_152677	201516	Hs.469663	NM_152677	ENSG00000180532	ZSCAN4	ZNF494	zinc finger and SCAN domain containing 4	protein-coding
chr5.43563211.+	chr5	43563211	43563212	+	0	NA	Intergenic	AluSg|SINE|Alu	-5690	NM_183323	10605	Hs.482038	NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding
chr20.18441231.-	chr20	18441231	18441232	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6598	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr3.47744607.-	chr3	47744607	47744608	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78798	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr12.106477576.-	chr12	106477576	106477577	-	0	NA	"intron (NM_014840, intron 4 of 6)"	"intron (NM_014840, intron 4 of 6)"	-56235	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr17.7246109.+	chr17	7246109	7246110	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6261	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr17.40543998.+	chr17	40543998	40543999	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3485	NM_139276	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr1.161879481.+	chr1	161879481	161879482	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114163	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr6.19648274.-	chr6	19648274	19648275	-	0	NA	Intergenic	AluY|SINE|Alu	189327	NM_001546	3400	Hs.731649	NM_001546		ID4	IDB4|bHLHb27	"inhibitor of DNA binding 4, dominant negative helix-loop-helix protein"	protein-coding
chr8.17187855.+	chr8	17187855	17187856	+	0	NA	"intron (NM_004686, intron 7 of 13)"	"intron (NM_004686, intron 7 of 13)"	83185	NM_004686	9108	Hs.625674	NM_004686		MTMR7	-	myotubularin related protein 7	protein-coding
chr8.78788160.-	chr8	78788160	78788161	-	0	NA	Intergenic	AluY|SINE|Alu	640176	NM_181839	5569	Hs.732129	NM_006823	ENSG00000171033	PKIA	PRKACN1	"protein kinase (cAMP-dependent, catalytic) inhibitor alpha"	protein-coding
chr1.43081226.+	chr1	43081226	43081227	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42822	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr17.77198167.+	chr17	77198167	77198168	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	127148	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr17.41476544.+	chr17	41476544	41476545	+	0	NA	"intron (NM_001661, intron 1 of 1)"	CpG	191	NM_001661	379	Hs.709866	NM_001661	ENSG00000175906	ARL4D	ARF4L|ARL6	ADP-ribosylation factor-like 4D	protein-coding
chr1.109827433.-	chr1	109827433	109827434	-	0	NA	Intergenic	AluY|SINE|Alu	1643	NM_001032291	84722	Hs.405925	NM_001005290	ENSG00000134222	PSRC1	DDA3|FP3214	proline/serine-rich coiled-coil 1	protein-coding
chr22.40391294.-	chr22	40391294	40391295	-	0	NA	"exon (NM_138435, exon 1 of 5)"	"exon (NM_138435, exon 1 of 5)"	-341	NM_138435	113828	Hs.197680	NM_138435	ENSG00000133477	FAM83F	-	"family with sequence similarity 83, member F"	protein-coding
chr5.18111552.-	chr5	18111552	18111553	-	0	NA	Intergenic	AluY|SINE|Alu	724133	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr1.97029360.-	chr1	97029360	97029361	-	0	NA	Intergenic	AluSp|SINE|Alu	157815	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr10.122148834.-	chr10	122148834	122148835	-	0	NA	Intergenic	AluSx1|SINE|Alu	67632	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr7.12751311.-	chr7	12751311	12751312	-	0	NA	Intergenic	AluY|SINE|Alu	-24400	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr4.185174247.+	chr4	185174247	185174248	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35133	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr16.443648.+	chr16	443648	443649	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3544	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr6.166331222.+	chr6	166331222	166331223	+	0	NA	Intergenic	Intergenic	-69817	NR_027284	441177	Hs.708964	NM_001013720		LINC00602	-	long intergenic non-protein coding RNA 602	miscRNA
chr22.27041117.-	chr22	27041117	27041118	-	0	NA	Intergenic	Intergenic	12329	NR_033319	440823	Hs.517502	NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2	myocardial infarction associated transcript (non-protein coding)	miscRNA
chr2.47661301.+	chr2	47661301	47661302	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	31095	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr3.179493608.-	chr3	179493608	179493609	-	0	NA	"intron (NM_003940, intron 19 of 20)"	LTR12C|LTR|ERV1	-122675	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
chr2.131675600.+	chr2	131675600	131675601	+	0	NA	"intron (NM_032995, intron 2 of 12)"	AluSg7|SINE|Alu	1376	NM_015320	50649	Hs.469935	NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
chr19.11104343.-	chr19	11104343	11104344	-	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	-9515	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr1.9555636.-	chr1	9555636	9555637	-	0	NA	Intergenic	CpG	43892	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr16.29882824.+	chr16	29882824	29882825	+	0	NA	"3' UTR (NM_201575, exon 17 of 17)"	"3' UTR (NM_201575, exon 17 of 17)"	7669	NR_015396	440356	Hs.448823	NR_015396	ENSG00000214725	LOC440356	-	uncharacterized LOC440356	miscRNA
chr20.39978495.+	chr20	39978495	39978496	+	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	8935	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr11.5315865.+	chr11	5315865	5315866	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7311	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr21.47838721.-	chr21	47838721	47838722	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40141	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr20.30161025.+	chr20	30161025	30161026	+	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	41	NR_046853	100874042	Hs.743198	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	miscRNA
chr8.61194036.+	chr8	61194036	61194037	+	0	NA	promoter-TSS (NM_004056)	promoter-TSS (NM_004056)	-82	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr8.23157511.-	chr8	23157511	23157512	-	0	NA	"intron (NM_002318, intron 12 of 13)"	"intron (NM_002318, intron 12 of 13)"	-11899	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr9.861765.+	chr9	861765	861766	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20075	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr7.810993.+	chr7	810993	810994	+	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	-43680	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr15.41539502.-	chr15	41539502	41539503	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16065	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr19.1497818.+	chr19	1497818	1497819	+	0	NA	"3' UTR (NM_138393, exon 5 of 5)"	"3' UTR (NM_138393, exon 5 of 5)"	6653	NM_138393	92840	Hs.744099	NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|TB2L1	receptor accessory protein 6	protein-coding
chr22.42306219.-	chr22	42306219	42306220	-	0	NA	"intron (NM_001207020, intron 3 of 3)"	CpG	-4452	NM_001207020	440829	Hs.526704	NM_001207020		SHISA8	C22orf17|Orf26	shisa homolog 8 (Xenopus laevis)	protein-coding
chr15.96874475.+	chr15	96874475	96874476	+	0	NA	"5' UTR (NM_021005, exon 1 of 3)"	"5' UTR (NM_021005, exon 1 of 3)"	364	NM_021005	7026	Hs.519445	NM_001145155	ENSG00000185551	NR2F2	ARP1|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	"nuclear receptor subfamily 2, group F, member 2"	protein-coding
chr6.168209502.-	chr6	168209502	168209503	-	0	NA	Intergenic	AluSq|SINE|Alu	11963	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr7.1909687.+	chr7	1909687	1909688	+	0	NA	"intron (NM_001013836, intron 18 of 18)"	"intron (NM_001013836, intron 18 of 18)"	-25798	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr12.113494345.+	chr12	113494345	113494346	+	0	NA	Intergenic	Intergenic	-1317	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr7.55379482.+	chr7	55379482	55379483	+	0	NA	Intergenic	SVA_D|Other|Other	-53659	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr1.32679373.-	chr1	32679373	32679374	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4678	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr3.12985984.-	chr3	12985984	12985985	-	0	NA	"intron (NM_001134382, intron 1 of 14)"	"intron (NM_001134382, intron 1 of 14)"	-22976	NM_014869	9922	Hs.475506	NM_001134382	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
chr14.105158930.-	chr14	105158930	105158931	-	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	-2987	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr15.92290030.-	chr15	92290030	92290031	-	0	NA	Intergenic	AluY|SINE|Alu	106908	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr14.39018166.-	chr14	39018166	39018167	-	0	NA	Intergenic	AluYa5|SINE|Alu	292591	NM_175060	161198	Hs.525307	NM_175060	ENSG00000176435	CLEC14A	C14orf27|CEG1|EGFR-5	"C-type lectin domain family 14, member A"	protein-coding
chr17.7141468.-	chr17	7141468	7141469	-	0	NA	"intron (NM_024297, intron 1 of 4)"	CpG	-1357	NM_024297	79142	Hs.644724	NM_024297	ENSG00000040633	PHF23	hJUNE-1b	PHD finger protein 23	protein-coding
chr1.47698122.-	chr1	47698122	47698123	-	0	NA	Intergenic	CpG	2679	NM_003189	6886	Hs.705618	NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	T-cell acute lymphocytic leukemia 1	protein-coding
chr17.28267924.-	chr17	28267924	28267925	-	0	NA	promoter-TSS (NR_026738)	promoter-TSS (NR_026738)	699	NM_198529	374786	Hs.662411	NM_001033562	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
chr19.47364604.+	chr19	47364604	47364605	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10401	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr7.22705276.-	chr7	22705276	22705277	-	0	NA	Intergenic	CpG	61490	NM_000600	3569	Hs.654458	NM_000600	ENSG00000136244	IL6	BSF2|HGF|HSF|IFNB2|IL-6	"interleukin 6 (interferon, beta 2)"	protein-coding
chr5.178885006.+	chr5	178885006	178885007	+	0	NA	Intergenic	AluY|SINE|Alu	-92556	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chr2.241185385.-	chr2	241185385	241185386	-	0	NA	Intergenic	Intergenic	105312	NM_148961	150677	Hs.148586	NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
chr7.102089962.+	chr7	102089962	102089963	+	0	NA	"3' UTR (NM_001271818, exon 4 of 4)"	"3' UTR (NM_001271818, exon 4 of 4)"	15359	NM_017621	54784	Hs.658598	NM_017621	ENSG00000160993	ALKBH4	ABH4	"alkB, alkylation repair homolog 4 (E. coli)"	protein-coding
chr19.13741867.-	chr19	13741867	13741868	-	0	NA	Intergenic	AluSc8|SINE|Alu	116886	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr3.36494773.-	chr3	36494773	36494774	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72676	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr21.35774155.-	chr21	35774155	35774156	-	0	NA	Intergenic	AluSc8|SINE|Alu	-26406	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr13.45819998.-	chr13	45819998	45819999	-	0	NA	"intron (NM_004128, intron 5 of 7)"	AluY|SINE|Alu	44823	NM_198404	386618	Hs.693242	NM_198404	ENSG00000180332	KCTD4	bA321C24.3	potassium channel tetramerisation domain containing 4	protein-coding
chr16.1123269.-	chr16	1123269	1123270	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-513	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr8.14882321.+	chr8	14882321	14882322	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-171302	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr10.16563404.-	chr10	16563404	16563405	-	0	NA	"5' UTR (NM_001010908, exon 1 of 2)"	"5' UTR (NM_001010908, exon 1 of 2)"	-600	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	"complement component 1, q subcomponent-like 3"	protein-coding
chr9.139071854.+	chr9	139071854	139071855	+	0	NA	Intergenic	Intergenic	23150	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr4.57334111.+	chr4	57334111	57334112	+	0	NA	"intron (NM_001267722, intron 1 of 16)"	CpG	349	NM_006947	6731	Hs.237825	NM_001267722		SRP72	BMFF	signal recognition particle 72kDa	protein-coding
chr5.1552111.+	chr5	1552111	1552112	+	0	NA	Intergenic	Intergenic	-28035	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr12.121338301.+	chr12	121338301	121338302	+	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	3854	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr1.246887781.+	chr1	246887781	246887782	+	0	NA	"exon (NM_016002, exon 1 of 12)"	"exon (NM_016002, exon 1 of 12)"	403	NM_016002	51097	Hs.498397	NM_016002	ENSG00000143653	SCCPDH	NET11|RP11-439E19.2	saccharopine dehydrogenase (putative)	protein-coding
chr20.4129306.+	chr20	4129306	4129307	+	0	NA	promoter-TSS (NM_175842)	promoter-TSS (NM_175842)	-120	NM_175840	54498	Hs.433337	NM_001270691	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAOH1|SMO	spermine oxidase	protein-coding
chr2.183903177.-	chr2	183903177	183903178	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-52	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr4.38190469.-	chr4	38190469	38190470	-	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-68894	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr19.3644479.-	chr19	3644479	3644480	-	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	17666	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr2.64811822.-	chr2	64811822	64811823	-	0	NA	"intron (NM_203437, intron 8 of 9)"	AluY|SINE|Alu	22624	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	miscRNA
chr1.110611560.+	chr1	110611560	110611561	+	0	NA	"intron (NM_006492, intron 1 of 3)"	CpG	1762	NM_006492	257	Hs.669953	NM_006492		ALX3	FND1	ALX homeobox 3	protein-coding
chrM.876.-	chrM	876	877	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr2.202092550.-	chr2	202092550	202092551	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5616	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr17.9202885.-	chr17	9202885	9202886	-	0	NA	"intron (NM_004853, intron 7 of 7)"	AluY|SINE|Alu	-276390	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
chr7.21498058.+	chr7	21498058	21498059	+	0	NA	"intron (NM_003112, intron 3 of 5)"	AluSx1|SINE|Alu	30369	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr2.232202239.-	chr2	232202239	232202240	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25180	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr14.23233323.-	chr14	23233323	23233324	-	0	NA	Intergenic	FLAM_C|SINE|Alu	2408	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr7.1474528.+	chr7	1474528	1474529	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24581	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr14.76577611.+	chr14	76577611	76577612	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40648	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr15.92290005.-	chr15	92290005	92290006	-	0	NA	Intergenic	AluY|SINE|Alu	106933	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr16.29245061.+	chr16	29245061	29245062	+	0	NA	Intergenic	Intergenic	-68547	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr6.152343858.+	chr6	152343858	152343859	+	0	NA	"intron (NM_001122742, intron 7 of 9)"	AluSp|SINE|Alu	215044	NM_000125	2099	Hs.208124	NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|Era|NR3A1	estrogen receptor 1	protein-coding
chr7.1026428.-	chr7	1026428	1026429	-	0	NA	"exon (NM_017781, exon 5 of 9)"	"exon (NM_017781, exon 5 of 9)"	-3593	NM_017781	54905	Hs.272795	NM_017781	ENSG00000073067	CYP2W1	-	"cytochrome P450, family 2, subfamily W, polypeptide 1"	protein-coding
chr19.3219050.+	chr19	3219050	3219051	+	0	NA	Intergenic	AluY|SINE|Alu	-5651	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr2.122878849.+	chr2	122878849	122878850	+	0	NA	Intergenic	AluY|SINE|Alu	365728	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr22.24237219.-	chr22	24237219	24237220	-	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	-654	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr22.45845268.+	chr22	45845268	45845269	+	0	NA	Intergenic	AluSz6|SINE|Alu	35696	NM_015653	26150	Hs.475110	NM_015653	ENSG00000128408	RIBC2	C22orf11	RIB43A domain with coiled-coils 2	protein-coding
chr2.228067224.-	chr2	228067224	228067225	-	0	NA	"intron (NM_000091, intron 1 of 51)"	AluYk4|SINE|Alu	-37943	NM_000091	1285	Hs.570065	NM_000091	ENSG00000169031	COL4A3	-	"collagen, type IV, alpha 3 (Goodpasture antigen)"	protein-coding
chr17.810081.-	chr17	810081	810082	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42730	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr2.102559070.+	chr2	102559070	102559071	+	0	NA	Intergenic	AluY|SINE|Alu	-49236	NM_004633	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	"interleukin 1 receptor, type II"	protein-coding
chr10.74059477.+	chr10	74059477	74059478	+	0	NA	Intergenic	AluSz6|SINE|Alu	25800	NM_019058	54541	Hs.523012	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
chr1.149646771.+	chr1	149646771	149646772	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70318	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr12.111714718.+	chr12	111714718	111714719	+	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	92207	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr3.81354228.+	chr3	81354228	81354229	+	0	NA	Intergenic	AluY|SINE|Alu	456722	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr13.111280686.-	chr13	111280686	111280687	-	0	NA	"intron (NR_040103, intron 5 of 9)"	"intron (NR_040103, intron 5 of 9)"	-12755	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr3.164852011.+	chr3	164852011	164852012	+	0	NA	Intergenic	AluY|SINE|Alu	-55728	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr6.146183402.-	chr6	146183402	146183403	-	0	NA	"intron (NR_038246, intron 2 of 2)"	AluYc|SINE|Alu	-47390	NR_038244	100507557	Hs.124537	NR_038244		LOC100507557	-	uncharacterized LOC100507557	miscRNA
chr19.12606203.-	chr19	12606203	12606204	-	0	NA	Intergenic	CpG	10571	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr8.111696901.-	chr8	111696901	111696902	-	0	NA	Intergenic	AluY|SINE|Alu	709942	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chrX.47336600.-	chrX	47336600	47336601	-	0	NA	"intron (NM_153380, intron 1 of 4)"	AluSx1|SINE|Alu	-5745	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr6.123144117.-	chr6	123144117	123144118	-	0	NA	Intergenic	AluY|SINE|Alu	-34146	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr20.1317925.+	chr20	1317925	1317926	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-8046	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr20.33005286.+	chr20	33005286	33005287	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48844	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr6.65337782.+	chr6	65337782	65337783	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673529	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr3.69101435.-	chr3	69101435	69101436	-	0	NA	promoter-TSS (NM_007114)	promoter-TSS (NM_007114)	-49	NM_007114	7110	Hs.267632	NM_007114	ENSG00000144747	TMF1	ARA160|TMF	TATA element modulatory factor 1	protein-coding
chr16.30960889.-	chr16	30960889	30960890	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-484	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr18.74312325.-	chr18	74312325	74312326	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-71713	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LOC284276	-	uncharacterized LOC284276	miscRNA
chr2.10198579.+	chr2	10198579	10198580	+	0	NA	"3' UTR (NM_001037160, exon 3 of 3)"	"3' UTR (NM_001037160, exon 3 of 3)"	14207	NM_001177718	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr3.42642376.-	chr3	42642376	42642377	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-196	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr4.93787958.+	chr4	93787958	93787959	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562408	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr22.47300661.+	chr22	47300661	47300662	+	0	NA	"intron (NM_014346, intron 7 of 12)"	AluSx1|SINE|Alu	142143	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr12.111604564.+	chr12	111604564	111604565	+	0	NA	"intron (NM_015267, intron 1 of 21)"	"intron (NM_015267, intron 1 of 21)"	132736	NM_015267	23316	Hs.124953	NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2	cut-like homeobox 2	protein-coding
chr16.85833502.-	chr16	85833502	85833503	-	0	NA	promoter-TSS (NM_001142288)	promoter-TSS (NM_001142288)	-329	NM_001861	1327	Hs.433419	NM_001861	ENSG00000131143	COX4I1	COX4|COX4-1|COXIV	cytochrome c oxidase subunit IV isoform 1	protein-coding
chr2.230579313.-	chr2	230579313	230579314	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	27	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr16.9185048.+	chr16	9185048	9185049	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-489	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr2.202092455.-	chr2	202092455	202092456	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5711	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr4.2010782.+	chr4	2010782	2010783	+	0	NA	"5' UTR (NM_005663, exon 1 of 11)"	"5' UTR (NM_005663, exon 1 of 11)"	180	NM_005663	7469	Hs.21771	NM_005663		NELFA	NELF-A|WHSC2	negative elongation factor complex member A	protein-coding
chr11.92637329.+	chr11	92637329	92637330	+	0	NA	Intergenic	AluY|SINE|Alu	-65460	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr7.150812772.+	chr7	150812772	150812773	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28946	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr16.10804886.-	chr16	10804886	10804887	-	0	NA	Intergenic	AluY|SINE|Alu	16084	NM_144674	146279	Hs.143519	NM_144674	ENSG00000153060	TEKT5	-	tektin 5	protein-coding
chr22.17719090.+	chr22	17719090	17719091	+	0	NA	Intergenic	AluSg|SINE|Alu	-28311	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr1.23888944.-	chr1	23888944	23888945	-	0	NA	Intergenic	Intergenic	2659	NM_002167	3399	Hs.76884	NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	"inhibitor of DNA binding 3, dominant negative helix-loop-helix protein"	protein-coding
chr1.80177681.+	chr1	80177681	80177682	+	0	NA	Intergenic	AluSx|SINE|Alu	-705186	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr18.41408428.+	chr18	41408428	41408429	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550813	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr2.106682222.-	chr2	106682222	106682223	-	0	NA	"exon (NM_032411, exon 1 of 4)"	"exon (NM_032411, exon 1 of 4)"	-109	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr9.7934818.-	chr9	7934818	7934819	-	0	NA	Intergenic	AluY|SINE|Alu	135019	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr2.55647013.+	chr2	55647013	55647014	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	44	NM_001135597	55704	Hs.292925	NM_001135597	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212	coiled-coil domain containing 88A	protein-coding
chr2.129354748.-	chr2	129354748	129354749	-	0	NA	Intergenic	Intergenic	278577	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr2.219232412.-	chr2	219232412	219232413	-	0	NA	"intron (NM_198559, intron 9 of 9)"	CpG	-10833	NM_198559	375307	Hs.645453	NM_198559	ENSG00000158428	C2orf62	-	chromosome 2 open reading frame 62	protein-coding
chr8.1390523.+	chr8	1390523	1390524	+	0	NA	Intergenic	Intergenic	-59009	NM_001277161	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr17.43138902.+	chr17	43138902	43138903	+	0	NA	promoter-TSS (NM_024819)	promoter-TSS (NM_024819)	222	NM_021079	4836	Hs.532790	NM_021079	ENSG00000136448	NMT1	NMT	N-myristoyltransferase 1	protein-coding
chr1.197042159.-	chr1	197042159	197042160	-	0	NA	Intergenic	AluY|SINE|Alu	5762	NM_001994	2165	Hs.435782	NM_001994	ENSG00000143278	F13B	FXIIIB	"coagulation factor XIII, B polypeptide"	protein-coding
chrM.2592.-	chrM	2592	2593	-	0	NA	NA	LSU-rRNA_Hsa|rRNA|rRNA	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr10.112860887.+	chr10	112860887	112860888	+	0	NA	Intergenic	MIRc|SINE|MIR	24097	NM_000681	150	Hs.249159	NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
chr12.51681504.+	chr12	51681504	51681505	+	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	-17302	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr12.66768114.+	chr12	66768114	66768115	+	0	NA	"intron (NM_001178074, intron 20 of 22)"	AluSx1|SINE|Alu	71779	NM_033647	92797	Hs.505941	NM_033647	ENSG00000127311	HELB	hDHB	helicase (DNA) B	protein-coding
chr6.57322568.-	chr6	57322568	57322569	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140146	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr9.425355.+	chr9	425355	425356	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44939	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr15.57662556.+	chr15	57662556	57662557	+	0	NA	Intergenic	AluSx|SINE|Alu	-6147	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr18.11959814.-	chr18	11959814	11959815	-	0	NA	Intergenic	SVA_D|Other|Other	21613	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr8.14882312.-	chr8	14882312	14882313	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171293	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr20.48080612.+	chr20	48080612	48080613	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18569	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr3.48918141.-	chr3	48918141	48918142	-	0	NA	"intron (NM_000387, intron 3 of 8)"	AluJb|SINE|Alu	-18285	NM_000387	788	Hs.13845	NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	"solute carrier family 25 (carnitine/acylcarnitine translocase), member 20"	protein-coding
chr2.128432616.+	chr2	128432616	128432617	+	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	148	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr9.128986139.-	chr9	128986139	128986140	-	0	NA	Intergenic	Intergenic	102984	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr6.162998525.-	chr6	162998525	162998526	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149639	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr20.62108092.+	chr20	62108092	62108093	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4099	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr21.45566105.-	chr21	45566105	45566106	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12611	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr3.151788715.+	chr3	151788715	151788716	+	0	NA	Intergenic	AluY|SINE|Alu	-197114	NM_021038	4154	Hs.725347	NM_021038	ENSG00000152601	MBNL1	EXP|EXP35|EXP40|EXP42|MBNL	muscleblind-like splicing regulator 1	protein-coding
chr9.121872039.-	chr9	121872039	121872040	-	0	NA	Intergenic	AluYk4|SINE|Alu	-259700	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chrM.6409.+	chrM	6409	6410	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.110299474.-	chr6	110299474	110299475	-	0	NA	promoter-TSS (NM_005284)	promoter-TSS (NM_005284)	824	NM_005284	2830	Hs.46332	NM_005284	ENSG00000146360	GPR6	-	G protein-coupled receptor 6	protein-coding
chr3.49479575.+	chr3	49479575	49479576	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12818	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr2.25500320.-	chr2	25500320	25500321	-	0	NA	"intron (NM_022552, intron 4 of 22)"	CpG	25136	NM_153759	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr12.50621268.+	chr12	50621268	50621269	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4780	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr16.55553193.-	chr16	55553193	55553194	-	0	NA	"intron (NM_017839, intron 1 of 13)"	AluY|SINE|Alu	-10280	NM_017839	54947	Hs.460857	NM_017839	ENSG00000087253	LPCAT2	AYTL1|LysoPAFAT	lysophosphatidylcholine acyltransferase 2	protein-coding
chr19.3766784.-	chr19	3766784	3766785	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4119	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr5.29531081.-	chr5	29531081	29531082	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604104	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr4.163164018.-	chr4	163164018	163164019	-	0	NA	Intergenic	AluY|SINE|Alu	78832	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr19.38836192.+	chr19	38836192	38836193	+	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	9749	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr3.37245165.+	chr3	37245165	37245166	+	0	NA	Intergenic	AluSx1|SINE|Alu	-27314	NM_006309	9209	Hs.740522	NM_001134369	ENSG00000093167	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
chr17.57868947.-	chr17	57868947	57868948	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49680	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr5.72112671.-	chr5	72112671	72112672	-	0	NA	"intron (NM_002270, intron 1 of 24)"	CpG	-253	NM_002270	3842	Hs.482497	NM_002270	ENSG00000083312	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
chr17.79981500.+	chr17	79981500	79981501	+	0	NA	promoter-TSS (NM_144998)	promoter-TSS (NM_144998)	220	NM_144999	201255	Hs.143774	NM_144999	ENSG00000169683	LRRC45	-	leucine rich repeat containing 45	protein-coding
chr18.19632281.+	chr18	19632281	19632282	+	0	NA	Intergenic	AluSg4|SINE|Alu	-117123	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr14.69395621.+	chr14	69395621	69395622	+	0	NA	"intron (NM_001130005, intron 1 of 20)"	"intron (NM_001130005, intron 1 of 20)"	50462	NM_001130004	87	Hs.509765	NM_001102	ENSG00000072110	ACTN1	-	"actinin, alpha 1"	protein-coding
chr9.12352818.-	chr9	12352818	12352819	-	0	NA	Intergenic	AluY|SINE|Alu	340568	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr11.61222696.+	chr11	61222696	61222697	+	0	NA	Intergenic	AluSx1|SINE|Alu	25099	NM_017841	54949	Hs.313247	NM_017841		SDHAF2	C11orf79|PGL2|SDH5	succinate dehydrogenase complex assembly factor 2	protein-coding
chr17.78397590.-	chr17	78397590	78397591	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4372	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr20.33005291.+	chr20	33005291	33005292	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48839	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr19.45678451.+	chr19	45678451	45678452	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3050	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr5.115953534.-	chr5	115953534	115953535	-	0	NA	Intergenic	AluY|SINE|Alu	42983	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr1.40691268.-	chr1	40691268	40691269	-	0	NA	"intron (NM_012421, intron 6 of 7)"	AluY|SINE|Alu	22305	NM_001008740	127391	Hs.406265	NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
chr2.128145223.-	chr2	128145223	128145224	-	0	NA	Intergenic	CpG	30773	NM_000312	5624	Hs.224698	NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C (inactivator of coagulation factors Va and VIIIa)	protein-coding
chr19.10041247.+	chr19	10041247	10041248	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5823	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr5.178157701.+	chr5	178157701	178157702	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	2	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chrX.54371339.+	chrX	54371339	54371340	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13099	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr6.111924227.+	chr6	111924227	111924228	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3250	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr2.131512939.-	chr2	131512939	131512940	-	0	NA	promoter-TSS (NM_001105193)	promoter-TSS (NM_001105193)	138	NM_152698	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chrX.112142828.+	chrX	112142828	112142829	+	0	NA	Intergenic	AluY|SINE|Alu	-58785	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr19.51296706.-	chr19	51296706	51296707	-	0	NA	"intron (NM_033068, intron 6 of 10)"	AluSx|SINE|Alu	-3034	NM_033068	93650	Hs.293394	NM_033068	ENSG00000142513	ACPT	-	"acid phosphatase, testicular"	protein-coding
chr13.114446699.+	chr13	114446699	114446700	+	0	NA	Intergenic	Intergenic	7363	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr1.151742028.-	chr1	151742028	151742029	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2897	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr3.48533719.+	chr3	48533719	48533720	+	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	7764	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr11.89899959.+	chr11	89899959	89899960	+	0	NA	"intron (NM_005467, intron 11 of 18)"	AluYk4|SINE|Alu	32141	NM_005467	10003	Hs.503560	NM_005467	ENSG00000077616	NAALAD2	GCPIII|GPCIII|NAADALASE2|NAALADASE2	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding
chr14.30961039.-	chr14	30961039	30961040	-	0	NA	Intergenic	AluSz|SINE|Alu	67290	NM_017769	55632	Hs.605081	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
chr9.842214.-	chr9	842214	842215	-	0	NA	"intron (NM_021951, intron 1 of 4)"	CpG	-524	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr3.166169437.-	chr3	166169437	166169438	-	0	NA	Intergenic	AluY|SINE|Alu	614184	NM_000055	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|E1	butyrylcholinesterase	protein-coding
chr2.106682188.+	chr2	106682188	106682189	+	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	75	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chrX.54763084.-	chrX	54763084	54763085	-	0	NA	Intergenic	SVA_B|Other|Other	-61589	NM_198510	347365	Hs.454272	NM_198510	ENSG00000102313	ITIH6	ITIH5L|UNQ6369|dJ14O9.1	"inter-alpha-trypsin inhibitor heavy chain family, member 6"	protein-coding
chr7.95234870.-	chr7	95234870	95234871	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8945	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr1.178011488.+	chr1	178011488	178011489	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4346	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr21.45205947.-	chr21	45205947	45205948	-	0	NA	Intergenic	AluYc|SINE|Alu	3471	NM_003683	8568	Hs.110757	NM_003683		RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding
chr3.1900255.-	chr3	1900255	1900256	-	0	NA	Intergenic	AluSp|SINE|Alu	240295	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr3.68753633.+	chr3	68753633	68753634	+	0	NA	Intergenic	AluSx3|SINE|Alu	228128	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr18.34900347.-	chr18	34900347	34900348	-	0	NA	"intron (NM_001025089, intron 3 of 11)"	"intron (NM_001025089, intron 3 of 11)"	-245653	NM_001025089	56853	Hs.600908	NM_001025087	ENSG00000101489	CELF4	BRUNOL-4|BRUNOL4	"CUGBP, Elav-like family member 4"	protein-coding
chr4.49160674.+	chr4	49160674	49160675	+	0	NA	Intergenic	AluY|SINE|Alu	172409	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr14.105736042.+	chr14	105736042	105736043	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20301	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr2.43253927.-	chr2	43253927	43253928	-	0	NA	Intergenic	Intergenic	-199818	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr10.17622295.-	chr10	17622295	17622296	-	0	NA	Intergenic	AluY|SINE|Alu	-37078	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr19.34248210.-	chr19	34248210	34248211	-	0	NA	"intron (NM_022467, intron 2 of 3)"	AluSz6|SINE|Alu	39541	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr20.55221017.-	chr20	55221017	55221018	-	0	NA	Intergenic	AluY|SINE|Alu	-16659	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr8.143356707.+	chr8	143356707	143356708	+	0	NA	"intron (NM_145003, intron 11 of 13)"	"intron (NM_145003, intron 11 of 13)"	76990	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr11.638938.-	chr11	638938	638939	-	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	-1633	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr4.5892144.-	chr4	5892144	5892145	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1829	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr1.8021825.-	chr1	8021825	8021826	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-111	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chrX.15780416.-	chrX	15780416	15780417	-	0	NA	"intron (NM_007220, intron 2 of 7)"	"intron (NM_007220, intron 2 of 7)"	-24004	NM_007220	11238	Hs.744128	NM_007220	ENSG00000169239	CA5B	CA-VB	"carbonic anhydrase VB, mitochondrial"	protein-coding
chr1.8837709.+	chr1	8837709	8837710	+	0	NA	"intron (NM_001042681, intron 1 of 22)"	AluY|SINE|Alu	39990	NM_012102	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr9.111476111.+	chr9	111476111	111476112	+	0	NA	Intergenic	L1PA7|LINE|L1	142164	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
chr17.27070053.+	chr17	27070053	27070054	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-970	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr7.1542784.+	chr7	1542784	1542785	+	0	NA	"exon (NM_001080453, exon 3 of 48)"	"exon (NM_001080453, exon 3 of 48)"	1234	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr10.131769840.-	chr10	131769840	131769841	-	0	NA	Intergenic	CpG-3433	7749	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr13.21872291.-	chr13	21872291	21872292	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-27	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr7.64198968.+	chr7	64198968	64198969	+	0	NA	Intergenic	SVA_D|Other|Other	-55798	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr10.104255186.-	chr10	104255186	104255187	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7326	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr4.146101721.+	chr4	146101721	146101722	+	0	NA	promoter-TSS (NM_001102653)	promoter-TSS (NM_001102653)	-889	NM_001102653	54726	Hs.270851	NM_001102653	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU domain containing 4	protein-coding
chr12.26275949.-	chr12	26275949	26275950	-	0	NA	"exon (NM_030762, exon 5 of 5)"	"exon (NM_030762, exon 5 of 5)"	-2054	NM_030762	79365	Hs.177841	NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|SHARP1|hDEC2	"basic helix-loop-helix family, member e41"	protein-coding
chr6.34770144.+	chr6	34770144	34770145	+	0	NA	"intron (NM_017754, intron 1 of 20)"	AluSx|SINE|Alu	10350	NM_017754	54887	Hs.700656	NM_017754	ENSG00000065060	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
chr16.55514379.+	chr16	55514379	55514380	+	0	NA	"intron (NM_004530, intron 1 of 12)"	"intron (NM_004530, intron 1 of 12)"	-1095	NM_001127891	4313	Hs.513617	NM_001127891	ENSG00000087245	MMP2	CLG4|CLG4A|MMP-II|MONA|TBE-1	"matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)"	protein-coding
chr9.35183310.-	chr9	35183310	35183311	-	0	NA	"intron (NM_006377, intron 1 of 38)"	SVA_A|Other|Other	-21321	NM_006377	10497	Hs.493791	NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding
chr16.1959157.+	chr16	1959157	1959158	+	0	NA	Intergenic	Intergenic	9074	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chrX.18117014.+	chrX	18117014	18117015	+	0	NA	Intergenic	Intergenic	122010	NM_153346	139105	Hs.403802	NM_001184767	ENSG00000177324	BEND2	CXorf20	BEN domain containing 2	protein-coding
chr2.74880318.-	chr2	74880318	74880319	-	0	NA	Intergenic	AluYg6|SINE|Alu	1037	NM_004263	10505	Hs.25887	NM_001271661	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F"	protein-coding
chr6.27839961.+	chr6	27839961	27839962	+	0	NA	TTS (NM_003546)	TTS (NM_003546)	138	NM_003533	8354	Hs.586261	NM_003533	ENSG00000182572	HIST1H3I	H3.f|H3/f|H3FF	"histone cluster 1, H3i"	protein-coding
chr2.130499515.+	chr2	130499515	130499516	+	0	NA	Intergenic	Intergenic	192375	NR_026740	389033	Hs.380682	NR_026740	ENSG00000214100	LOC389033	-	placenta-specific 9 pseudogene	pseudo
chr15.83953307.-	chr15	83953307	83953308	-	0	NA	"exon (NM_001717, exon 1 of 5)"	"exon (NM_001717, exon 1 of 5)"	-161	NM_001717	646	Hs.459153	NM_001717	ENSG00000169594	BNC1	BNC|BSN1|HsT19447	basonuclin 1	protein-coding
chr11.1266523.-	chr11	1266523	1266524	-	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	-22228	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chrX.48871466.-	chrX	48871466	48871467	-	0	NA	Intergenic	AluY|SINE|Alu	12791	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
chr1.227982953.+	chr1	227982953	227982954	+	0	NA	Intergenic	Intergenic	-20465	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr17.7218270.+	chr17	7218270	7218271	+	0	NA	TTS (NM_032442)	TTS (NM_032442)	388	NM_004489	2874	Hs.438219	NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
chr9.135305092.-	chr9	135305092	135305093	-	0	NA	"intron (NM_207417, intron 1 of 6)"	AluY|SINE|Alu	-19481	NM_207417	389799	Hs.201709	NM_207417	ENSG00000188523	C9orf171	-	chromosome 9 open reading frame 171	protein-coding
chr5.179225558.+	chr5	179225558	179225559	+	0	NA	promoter-TSS (NR_031598)	promoter-TSS (NR_031598)	-212	NR_031598	100302156		NR_031598		MIR1229	MIRN1229|hsa-mir-1229	microRNA 1229	miscRNA
chrX.133565037.-	chrX	133565037	133565038	-	0	NA	Intergenic	AluSp|SINE|Alu	29138	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr2.183903192.+	chr2	183903192	183903193	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	37	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr6.14166693.+	chr6	14166693	14166694	+	0	NA	Intergenic	AluY|SINE|Alu	48828	NM_004233	9308	Hs.595133	NM_001040280	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
chr7.158268151.-	chr7	158268151	158268152	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-57354	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr12.96314727.+	chr12	96314727	96314728	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21701	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr18.54318620.+	chr18	54318620	54318621	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	4	NM_052834	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr1.110881080.+	chr1	110881080	110881081	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	713	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr7.6843802.+	chr7	6843802	6843803	+	0	NA	"intron (NM_198097, intron 12 of 14)"	AluSz|SINE|Alu	22124	NM_198097	221960	Hs.567779	NM_198097		CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
chr8.2947599.-	chr8	2947599	2947600	-	0	NA	"intron (NM_033225, intron 48 of 69)"	AluY|SINE|Alu	-954441	NM_003970	9172	Hs.443683	NM_003970	ENSG00000036448	MYOM2	TTNAP	myomesin 2	protein-coding
chr1.102295535.+	chr1	102295535	102295536	+	0	NA	"intron (NM_058170, intron 3 of 5)"	AluY|SINE|Alu	-42032	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	"DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5"	pseudo
chr19.34287525.-	chr19	34287525	34287526	-	0	NA	promoter-TSS (NM_001129995)	promoter-TSS (NM_001129995)	226	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr16.89034203.+	chr16	89034203	89034204	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9301	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr17.29255145.-	chr17	29255145	29255146	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6391	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr10.35327219.-	chr10	35327219	35327220	-	0	NA	"intron (NM_001198778, intron 9 of 20)"	AluSx3|SINE|Alu	-36039	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr12.57610020.+	chr12	57610020	57610021	+	0	NA	promoter-TSS (NM_007224)	promoter-TSS (NM_007224)	-558	NM_007224	11247	Hs.534396	NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
chr1.10727916.+	chr1	10727916	10727917	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128817	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr14.20811147.+	chr14	20811147	20811148	+	0	NA	promoter-TSS (NM_005484)	promoter-TSS (NM_005484)	423	NR_002312	85495	Hs.613102	NR_002312	ENSG00000252678	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	miscRNA
chr17.79701551.-	chr17	79701551	79701552	-	0	NA	Intergenic	Intergenic	-22285	NM_001270953	1468	Hs.548187	NM_001270888	ENSG00000183048	SLC25A10	DIC	"solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10"	protein-coding
chr19.22949522.+	chr19	22949522	22949523	+	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	17451	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr3.48742517.+	chr3	48742517	48742518	+	0	NA	"intron (NM_001005910, intron 1 of 2)"	AluY|SINE|Alu	12194	NM_001146179	51447	Hs.595983	NM_001005909	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
chr13.30745042.+	chr13	30745042	30745043	+	0	NA	Intergenic	L2c|LINE|L2	136149	NM_001014380	84056	Hs.243596	NM_001014380	ENSG00000102781	KATNAL1	-	katanin p60 subunit A-like 1	protein-coding
chr21.33982649.+	chr21	33982649	33982650	+	0	NA	"intron (NR_036552, intron 1 of 5)"	AluJb|SINE|Alu	2264	NR_036552	56683	Hs.5811	NM_017835	ENSG00000159079	C21orf59	C21orf48	chromosome 21 open reading frame 59	protein-coding
chr17.59482747.+	chr17	59482747	59482748	+	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	5490	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr22.37603174.-	chr22	37603174	37603175	-	0	NA	"exon (NM_001051, exon 2 of 2)"	"exon (NM_001051, exon 2 of 2)"	-5179	NM_001051	6753	Hs.225995	NM_001051		SSTR3	-	somatostatin receptor 3	protein-coding
chr19.48814059.+	chr19	48814059	48814060	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9273	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr16.8974148.+	chr16	8974148	8974149	+	0	NA	Intergenic	Intergenic	-11285	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr10.6985541.-	chr10	6985541	6985542	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163981	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr4.2878497.+	chr4	2878497	2878498	+	0	NA	"intron (NM_014189, intron 2 of 14)"	AluY|SINE|Alu	32913	NM_014189	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1 (alpha)	protein-coding
chr4.39399554.+	chr4	39399554	39399555	+	0	NA	Intergenic	AluSx|SINE|Alu	-8919	NM_175737	152831	Hs.90756	NM_175737	ENSG00000134962	KLB	BKL	klotho beta	protein-coding
chr11.66104513.-	chr11	66104513	66104514	-	0	NA	promoter-TSS (NM_004292)	promoter-TSS (NM_004292)	513	NM_004292	9610	Hs.1030	NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
chr7.5410874.+	chr7	5410874	5410875	+	0	NA	"exon (NM_001080495, exon 11 of 30)"	"exon (NM_001080495, exon 11 of 30)"	52303	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr4.49099239.-	chr4	49099239	49099240	-	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-110974	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr5.179581155.+	chr5	179581155	179581156	+	0	NA	"intron (NM_175062, intron 1 of 13)"	"intron (NM_175062, intron 1 of 13)"	54975	NM_175062	255426	Hs.190559	NM_001031799	ENSG00000146090	RASGEF1C	-	"RasGEF domain family, member 1C"	protein-coding
chr10.120537018.+	chr10	120537018	120537019	+	0	NA	Intergenic	AluSx1|SINE|Alu	-22260	NM_153810	143384	Hs.420024	NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	"CDK2-associated, cullin domain 1"	protein-coding
chr12.49208390.+	chr12	49208390	49208391	+	0	NA	promoter-TSS (NM_001206916)	promoter-TSS (NM_001206916)	175	NM_001206917	784	Hs.737291	NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	"calcium channel, voltage-dependent, beta 3 subunit"	protein-coding
chr2.114361285.+	chr2	114361285	114361286	+	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	9	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
chr1.224601852.-	chr1	224601852	224601853	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15839	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr17.73615797.+	chr17	73615797	73615798	+	0	NA	"non-coding (NR_003587, exon 44 of 61)"	"non-coding (NR_003587, exon 44 of 61)"	-13717	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr8.70401953.-	chr8	70401953	70401954	-	0	NA	"intron (NM_001128204, intron 1 of 21)"	AluY|SINE|Alu	3075	NM_001128206	23213	Hs.409602	NM_001128204	ENSG00000137573	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
chr2.85554170.+	chr2	85554170	85554171	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1249	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr7.1798932.-	chr7	1798932	1798933	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50134	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr3.47620152.+	chr3	47620152	47620153	+	0	NA	"exon (NM_001206944, exon 1 of 4)"	"exon (NM_001206944, exon 1 of 4)"	207	NM_001206944	10675	Hs.45127	NM_001206942		CSPG5	NGC	chondroitin sulfate proteoglycan 5 (neuroglycan C)	protein-coding
chr9.131013024.+	chr9	131013024	131013025	+	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	-5715	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr18.43751048.+	chr18	43751048	43751049	+	0	NA	Intergenic	AluSx|SINE|Alu	-2940	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr2.99466552.-	chr2	99466552	99466553	-	0	NA	"intron (NM_207362, intron 1 of 9)"	"intron (NM_207362, intron 1 of 9)"	-86132	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211-like	protein-coding
chr2.44380941.-	chr2	44380941	44380942	-	0	NA	Intergenic	AluY|SINE|Alu	15059	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr19.4065775.-	chr19	4065775	4065776	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1041	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chrX.98017381.+	chrX	98017381	98017382	+	0	NA	Intergenic	AluYa5|SINE|Alu	1177460	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr7.3456543.+	chr7	3456543	3456544	+	0	NA	"intron (NM_152744, intron 1 of 44)"	AluSq|SINE|Alu	115463	NM_152744	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr2.122475141.-	chr2	122475141	122475142	-	0	NA	"intron (NR_037857, intron 3 of 3)"	AluSq2|SINE|Alu	-19362	NM_032390	84365	Hs.367842	NM_032390	ENSG00000155438	MKI67IP	NIFK|Nopp34	MKI67 (FHA domain) interacting nucleolar phosphoprotein	protein-coding
chr1.113336844.-	chr1	113336844	113336845	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73655	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr17.80508957.-	chr17	80508957	80508958	-	0	NA	"intron (NM_004514, intron 1 of 8)"	AluY|SINE|Alu	-31363	NM_004514	3607	Hs.591140	NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
chr12.8057433.-	chr12	8057433	8057434	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31459	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr7.130332824.-	chr7	130332824	130332825	-	0	NA	"intron (NM_012133, intron 5 of 12)"	AluSc8|SINE|Alu	-20774	NM_012133	26958	Hs.6421	NM_012133		COPG2	2-COP	"coatomer protein complex, subunit gamma 2"	protein-coding
chr4.44679281.-	chr4	44679281	44679282	-	0	NA	Intergenic	AluSg|SINE|Alu	1152	NM_021927	60558	Hs.546419	NM_021927	ENSG00000151806	GUF1	EF-4	GUF1 GTPase homolog (S. cerevisiae)	protein-coding
chr3.196700382.-	chr3	196700382	196700383	-	0	NA	Intergenic	SVA_D|Other|Other	4678	NM_025163	80235	Hs.518403	NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	"phosphatidylinositol glycan anchor biosynthesis, class Z"	protein-coding
chr20.18441233.+	chr20	18441233	18441234	+	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	6596	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr15.41613096.-	chr15	41613096	41613097	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11723	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr16.56171991.-	chr16	56171991	56171992	-	0	NA	"intron (NR_027078, intron 2 of 4)"	AluJb|SINE|Alu	-53015	NR_027078	283856	Hs.707433	NR_027078	ENSG00000246379	LOC283856	-	uncharacterized LOC283856	miscRNA
chr7.95234884.-	chr7	95234884	95234885	-	0	NA	Intergenic	LTR12C|LTR|ERV1	8959	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr21.47485675.-	chr21	47485675	47485676	-	0	NA	Intergenic	Intergenic	32358	NM_001849	1292	Hs.420269	NM_001849	ENSG00000142173	COL6A2	PP3610	"collagen, type VI, alpha 2"	protein-coding
chr10.4887329.+	chr10	4887329	4887330	+	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	18960	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr22.39152066.+	chr22	39152066	39152067	+	0	NA	promoter-TSS (NM_015374)	promoter-TSS (NM_015374)	-42	NM_015374	25777	Hs.744734	NM_001199579	ENSG00000100242	SUN2	UNC84B	Sad1 and UNC84 domain containing 2	protein-coding
chr10.135031488.+	chr10	135031488	135031489	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12290	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr12.663189.+	chr12	663189	663190	+	0	NA	"intron (NM_173593, intron 14 of 19)"	"intron (NM_173593, intron 14 of 19)"	93646	NM_173593	283358	Hs.504416	NM_173593		B4GALNT3	-	"beta-1,4-N-acetyl-galactosaminyl transferase 3"	protein-coding
chr22.26439740.+	chr22	26439740	26439741	+	0	NA	Intergenic	AluSx3|SINE|Alu	-125700	NM_001184773	23544	Hs.194766	NM_001184773	ENSG00000100095	SEZ6L	-	seizure related 6 homolog (mouse)-like	protein-coding
chr2.25758476.-	chr2	25758476	25758477	-	0	NA	"intron (NM_001256303, intron 8 of 19)"	SVA_A|Other|Other	-114615	NM_001256308	1838	Hs.307720	NM_001256303	ENSG00000138101	DTNB	-	"dystrobrevin, beta"	protein-coding
chr6.88118005.+	chr6	88118005	88118006	+	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	315	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr2.224599663.-	chr2	224599663	224599664	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102656	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr7.150812715.-	chr7	150812715	150812716	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28889	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr7.1286195.-	chr7	1286195	1286196	-	0	NA	Intergenic	CpG	-13541	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr6.55775421.+	chr6	55775421	55775422	+	0	NA	Intergenic	SVA_D|Other|Other	-35046	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr20.61000458.-	chr20	61000458	61000459	-	0	NA	"intron (NM_080833, intron 1 of 13)"	"intron (NM_080833, intron 1 of 13)"	-2171	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr11.120093185.+	chr11	120093185	120093186	+	0	NA	"intron (NM_178507, intron 1 of 3)"	AluSx|SINE|Alu	11438	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr11.1122343.-	chr11	1122343	1122344	-	0	NA	Intergenic	Intergenic	-47468	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr2.136760840.-	chr2	136760840	136760841	-	0	NA	Intergenic	AluSq2|SINE|Alu	17618	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr17.8252956.-	chr17	8252956	8252957	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9768	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr7.29605849.+	chr7	29605849	29605850	+	0	NA	"5' UTR (NM_175887, exon 2 of 2)"	"5' UTR (NM_175887, exon 2 of 2)"	2422	NM_175887	222171	Hs.91109	NM_175887	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
chr6.91004959.-	chr6	91004959	91004960	-	0	NA	"intron (NM_021813, intron 1 of 8)"	CpG	-1603	NM_021813	60468	Hs.269764	NM_001170794	ENSG00000112182	BACH2	BTBD25	"BTB and CNC homology 1, basic leucine zipper transcription factor 2"	protein-coding
chr21.47879142.+	chr21	47879142	47879143	+	0	NA	"intron (NM_001146114, intron 1 of 27)"	CpG	280	NM_206889	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr16.4835223.-	chr16	4835223	4835224	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3175	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr6.22057522.+	chr6	22057522	22057523	+	0	NA	"intron (NR_015410, intron 8 of 11)"	AluYc|SINE|Alu	89900	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	LOC729177	-	uncharacterized LOC729177	miscRNA
chr20.60392341.+	chr20	60392341	60392342	+	0	NA	"intron (NM_001252339, intron 3 of 14)"	"intron (NM_001252339, intron 3 of 14)"	136377	NR_031658	100302168		NR_031658	ENSG00000221417	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	miscRNA
chrX.53125816.+	chrX	53125816	53125817	+	0	NA	Intergenic	AluJb|SINE|Alu	14274	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chrX.53165830.+	chrX	53165830	53165831	+	0	NA	Intergenic	AluJo|SINE|Alu	54288	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr15.63892629.-	chr15	63892629	63892630	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-397	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr3.122695613.+	chr3	122695613	122695614	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-632	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr19.16633091.-	chr19	16633091	16633092	-	0	NA	TTS (NM_032207)	TTS (NM_032207)	-20172	NM_006387	10523	Hs.740364	NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
chr1.55505431.-	chr1	55505431	55505432	-	0	NA	"5' UTR (NM_174936, exon 1 of 12)"	"5' UTR (NM_174936, exon 1 of 12)"	-282	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr1.91870233.+	chr1	91870233	91870234	+	0	NA	"intron (NM_001017975, intron 1 of 38)"	CpG	193	NM_001017975	164045	Hs.454818	NM_001017975	ENSG00000162669	HFM1	MER3|RP11-539G11.1|SEC63D1|Si-11|Si-11-6|helicase	"HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)"	protein-coding
chr10.126078347.-	chr10	126078347	126078348	-	0	NA	Intergenic	Intergenic	-29198	NM_000274	4942	Hs.523332	NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
chr2.48784516.-	chr2	48784516	48784517	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11643	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr6.166722205.+	chr6	166722205	166722206	+	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	-334	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr22.24237307.-	chr22	24237307	24237308	-	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	-742	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr2.1554809.-	chr2	1554809	1554810	-	0	NA	Intergenic	Intergenic	-136629	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr18.60659278.-	chr18	60659278	60659279	-	0	NA	Intergenic	Intergenic	-276606	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
chr14.51338815.+	chr14	51338815	51338816	+	0	NA	promoter-TSS (NM_181814)	promoter-TSS (NM_181814)	-63	NM_001206673	145447	Hs.271896	NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
chr1.1109694.+	chr1	1109694	1109695	+	0	NA	"5' UTR (NM_001130045, exon 2 of 16)"	"5' UTR (NM_001130045, exon 2 of 16)"	408	NM_001130045	254173	Hs.454835	NM_001130045	ENSG00000162571	TTLL10	TTLL5	"tubulin tyrosine ligase-like family, member 10"	protein-coding
chr19.48381900.-	chr19	48381900	48381901	-	0	NA	"intron (NM_003167, intron 4 of 5)"	AluSg4|SINE|Alu	-7754	NM_003167	6822	Hs.515835	NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa	"sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1"	protein-coding
chr12.132116771.+	chr12	132116771	132116772	+	0	NA	Intergenic	L1ME1|LINE|L1	-78861	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr7.72848986.-	chr7	72848986	72848987	-	0	NA	"exon (NM_003508, exon 1 of 1)"	"exon (NM_003508, exon 1 of 1)"	-877	NM_003508	8326	Hs.647029	NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled family receptor 9	protein-coding
chr19.34106408.-	chr19	34106408	34106409	-	0	NA	Intergenic	AluSc8|SINE|Alu	6453	NM_001127895	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr20.46019384.+	chr20	46019384	46019385	+	0	NA	Intergenic	AluYb8|SINE|Alu	-33910	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr17.4697377.+	chr17	4697377	4697378	+	0	NA	Intergenic	AluY|SINE|Alu	-2062	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr6.157468603.+	chr6	157468603	157468604	+	0	NA	"intron (NM_020732, intron 8 of 19)"	C-rich|Low_complexity|Low_complexity	276650	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chrX.42145009.-	chrX	42145009	42145010	-	0	NA	Intergenic	SVA_D|Other|Other	362722	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr11.450555.-	chr11	450555	450556	-	0	NA	"exon (NM_030783, exon 1 of 12)"	"exon (NM_030783, exon 1 of 12)"	-275	NM_030783	81490	Hs.731700	NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
chr17.3820305.+	chr17	3820305	3820306	+	0	NA	promoter-TSS (NM_002558)	promoter-TSS (NM_002558)	-345	NM_002558	5023	Hs.41735	NM_002558	ENSG00000108405	P2RX1	P2X1	"purinergic receptor P2X, ligand-gated ion channel, 1"	protein-coding
chr3.126260593.-	chr3	126260593	126260594	-	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	-17165	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr14.77278993.-	chr14	77278993	77278994	-	0	NA	"intron (NM_015305, intron 1 of 9)"	CpG	-290	NM_015305	23357	Hs.497448	NM_015305	ENSG00000013523	ANGEL1	KIAA0759	angel homolog 1 (Drosophila)	protein-coding
chrX.147774582.+	chrX	147774582	147774583	+	0	NA	"intron (NM_002025, intron 3 of 20)"	AluY|SINE|Alu	-26033	NM_001170628	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr17.3317552.-	chr17	3317552	3317553	-	0	NA	Intergenic	AluSc8|SINE|Alu	6310	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr19.7587592.+	chr19	7587592	7587593	+	0	NA	promoter-TSS (NM_020533)	promoter-TSS (NM_020533)	96	NM_020533	57192	Hs.631858	NM_020533	ENSG00000090674	MCOLN1	MG-2|ML4|MLIV|MST080|TRP-ML1|TRPM-L1|TRPML1	mucolipin 1	protein-coding
chr10.135075409.-	chr10	135075409	135075410	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14285	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr16.30960466.-	chr16	30960466	30960467	-	0	NA	promoter-TSS (NM_152288)	promoter-TSS (NM_152288)	-61	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr22.49833058.+	chr22	49833058	49833059	+	0	NA	Intergenic	AluSx|SINE|Alu	218132	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr19.39903079.+	chr19	39903079	39903080	+	0	NA	promoter-TSS (NM_022835)	promoter-TSS (NM_022835)	-671	NM_022835	64857	Hs.631574	NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG	"pleckstrin homology domain containing, family G (with RhoGef domain) member 2"	protein-coding
chr10.42385277.-	chr10	42385277	42385278	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-478216	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr2.67614129.+	chr2	67614129	67614130	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10313	NM_019002	54465	Hs.353022	NM_019002	ENSG00000143971	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
chr19.17559291.+	chr19	17559291	17559292	+	0	NA	promoter-TSS (NM_001190844)	promoter-TSS (NM_001190844)	85	NM_001190844	100130519	Hs.436603	NM_001190844	ENSG00000188051	TMEM221	-	transmembrane protein 221	protein-coding
chr16.27613636.+	chr16	27613636	27613637	+	0	NA	"intron (NM_015202, intron 2 of 27)"	L2a|LINE|L2	52168	NM_015202	23247	Hs.460459	NM_015202	ENSG00000047578	KIAA0556	-	KIAA0556	protein-coding
chrX.147774558.+	chrX	147774558	147774559	+	0	NA	"intron (NM_002025, intron 3 of 20)"	AluY|SINE|Alu	-26057	NM_001170628	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr17.57884652.+	chr17	57884652	57884653	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33975	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr21.43109550.-	chr21	43109550	43109551	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10088	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr7.532205.+	chr7	532205	532206	+	0	NA	Intergenic	Intergenic	27276	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr12.118663869.+	chr12	118663869	118663870	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89999	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr7.22396709.+	chr7	22396709	22396710	+	0	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-176	NM_012294	9771	Hs.713217	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chr5.170687161.+	chr5	170687161	170687162	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49127	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr8.27695133.+	chr8	27695133	27695134	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	216	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr8.134309813.+	chr8	134309813	134309814	+	0	NA	promoter-TSS (NM_001135242)	promoter-TSS (NM_001135242)	-266	NM_006096	10397	Hs.618002	NM_001135242	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
chr15.57662560.-	chr15	57662560	57662561	-	0	NA	Intergenic	AluSx|SINE|Alu	6143	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr2.192374880.+	chr2	192374880	192374881	+	0	NA	Intergenic	AluY|SINE|Alu	-167918	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr11.100596566.+	chr11	100596566	100596567	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38159	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chrX.67356334.+	chrX	67356334	67356335	+	0	NA	"intron (NM_002547, intron 15 of 24)"	AluY|SINE|Alu	296965	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr4.2537840.+	chr4	2537840	2537841	+	0	NA	Intergenic	CpG	66660	NM_001185009	6047	Hs.740360	NM_001185009	ENSG00000063978	RNF4	SLX5|SNURF	ring finger protein 4	protein-coding
chr3.50701795.-	chr3	50701795	50701796	-	0	NA	Intergenic	AluY|SINE|Alu	10716	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr12.3874476.+	chr12	3874476	3874477	+	0	NA	Intergenic	AluY|SINE|Alu	-12110	NM_032680	84766	Hs.504534	NM_001144959	ENSG00000130038	EFCAB4B	CRACR2A	EF-hand calcium binding domain 4B	protein-coding
chr21.43198242.-	chr21	43198242	43198243	-	0	NA	Intergenic	Intergenic	10993	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr3.31574354.-	chr3	31574354	31574355	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	137	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr8.64772965.+	chr8	64772965	64772966	+	0	NA	Intergenic	AluY|SINE|Alu	90977	NR_038875	286184	Hs.586402	NR_038875	ENSG00000253734	LOC286184	-	uncharacterized LOC286184	miscRNA
chr20.45557349.+	chr20	45557349	45557350	+	0	NA	"intron (NM_005244, intron 1 of 15)"	"intron (NM_005244, intron 1 of 15)"	34086	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr12.133328242.+	chr12	133328242	133328243	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10209	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr16.87799876.-	chr16	87799876	87799877	-	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	278	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr1.236252103.-	chr1	236252103	236252104	-	0	NA	Intergenic	Intergenic	23622	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr5.159429737.+	chr5	159429737	159429738	+	0	NA	Intergenic	AluSz|SINE|Alu	-6443	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr9.135946993.-	chr9	135946993	135946994	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9628	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr12.120959427.+	chr12	120959427	120959428	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7537	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr14.23233397.-	chr14	23233397	23233398	-	0	NA	Intergenic	FLAM_C|SINE|Alu	2334	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr5.178157384.+	chr5	178157384	178157385	+	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	319	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr5.168300393.-	chr5	168300393	168300394	-	0	NA	"intron (NM_003062, intron 5 of 35)"	AluJb|SINE|Alu	105133	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	miscRNA
chr19.36571206.+	chr19	36571206	36571207	+	0	NA	"intron (NM_173636, intron 9 of 31)"	AluY|SINE|Alu	25423	NM_001083961	284403	Hs.116244	NM_001083961	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
chr9.105365761.-	chr9	105365761	105365762	-	0	NA	Intergenic	SVA_B|Other|Other	391832	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr16.58288658.+	chr16	58288658	58288659	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4818	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr2.6908287.-	chr2	6908287	6908288	-	0	NA	"intron (NR_038369, intron 1 of 5)"	"intron (NR_038369, intron 1 of 5)"	-2155	NR_038369	400941	Hs.446195	NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	miscRNA
chr21.45205965.-	chr21	45205965	45205966	-	0	NA	Intergenic	AluYc|SINE|Alu	3453	NM_003683	8568	Hs.110757	NM_003683		RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding
chr9.90472384.-	chr9	90472384	90472385	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1587	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chr19.18180399.-	chr19	18180399	18180400	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17298	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr5.178157700.-	chr5	178157700	178157701	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-3	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr20.31565650.+	chr20	31565650	31565651	+	0	NA	Intergenic	Intergenic	26589	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr3.38106468.-	chr3	38106468	38106469	-	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	-25772	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr5.18111563.-	chr5	18111563	18111564	-	0	NA	Intergenic	AluY|SINE|Alu	724144	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr1.228745692.+	chr1	228745692	228745693	+	0	NA	Intergenic	CpG	-34702	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr1.1571721.+	chr1	1571721	1571722	+	0	NA	"exon (NM_033488, exon 19 of 21)"	"exon (NM_033488, exon 19 of 21)"	3562	NR_002946	8511	Hs.671760	NR_002946	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
chr7.961916.-	chr7	961916	961917	-	0	NA	"intron (NM_006869, intron 3 of 10)"	"intron (NM_006869, intron 3 of 10)"	-32373	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr2.25667155.-	chr2	25667155	25667156	-	0	NA	"intron (NM_001256303, intron 12 of 19)"	AluSx1|SINE|Alu	101696	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr14.94606708.+	chr14	94606708	94606709	+	0	NA	Intergenic	Intergenic	-10751	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chr1.226530068.+	chr1	226530068	226530069	+	0	NA	Intergenic	AluY|SINE|Alu	-32619	NM_001270410	286826	Hs.120817	NM_001270409	ENSG00000183814	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 homolog (C. elegans)	protein-coding
chr12.8830976.-	chr12	8830976	8830977	-	0	NA	Intergenic	AluSp|SINE|Alu	15543	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr11.403584.-	chr11	403584	403585	-	0	NA	"intron (NM_007183, intron 9 of 12)"	"intron (NM_007183, intron 9 of 12)"	-9367	NM_007183	11187	Hs.534395	NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
chr12.8830971.-	chr12	8830971	8830972	-	0	NA	Intergenic	AluSp|SINE|Alu	15538	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr7.5396344.-	chr7	5396344	5396345	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	-66833	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr9.6858730.+	chr9	6858730	6858731	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101089	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr16.87159406.-	chr16	87159406	87159407	-	0	NA	Intergenic	Intergenic	-191620	NM_001256917	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr1.209280852.+	chr1	209280852	209280853	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-321316	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
chr20.60698413.+	chr20	60698413	60698414	+	0	NA	"intron (NM_144703, intron 1 of 8)"	"intron (NM_144703, intron 1 of 8)"	896	NM_144703	149986	Hs.105379	NM_144703	ENSG00000149657	LSM14B	C20orf40|FAM61B|LSM13|RAP55B|bA11M20.3	"LSM14B, SCD6 homolog B (S. cerevisiae)"	protein-coding
chr9.76965999.-	chr9	76965999	76966000	-	0	NA	Intergenic	AluSp|SINE|Alu	146253	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr14.101290888.-	chr14	101290888	101290889	-	0	NA	Intergenic	Intergenic	1557	NR_002766	55384	Hs.654863	NR_002766	ENSG00000214548	MEG3	FP504|GTL2|LINC00023|NCRNA00023|PRO0518|PRO2160|prebp1	maternally expressed 3 (non-protein coding)	miscRNA
chr1.212898531.+	chr1	212898531	212898532	+	0	NA	TTS (NM_001042549)	TTS (NM_001042549)	-25204	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr1.9517605.-	chr1	9517605	9517606	-	0	NA	Intergenic	AluJb|SINE|Alu	81923	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	"solute carrier family 25 (pyrimidine nucleotide carrier), member 33"	protein-coding
chr16.4164697.+	chr16	4164697	4164698	+	0	NA	"exon (NM_001116, exon 2 of 11)"	"exon (NM_001116, exon 2 of 11)"	1489	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr18.11959849.-	chr18	11959849	11959850	-	0	NA	Intergenic	SVA_D|Other|Other	21578	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr12.132116788.+	chr12	132116788	132116789	+	0	NA	Intergenic	L1ME1|LINE|L1	-78844	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr11.1388703.+	chr11	1388703	1388704	+	0	NA	Intergenic	AluY|SINE|Alu	-22426	NM_003957	9024	Hs.170819	NM_001256627	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|STK29	BR serine/threonine kinase 2	protein-coding
chr18.63211102.+	chr18	63211102	63211103	+	0	NA	Intergenic	AluY|SINE|Alu	-206386	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr2.35037503.+	chr2	35037503	35037504	+	0	NA	Intergenic	AluY|SINE|Alu	-1084219	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr9.861794.+	chr9	861794	861795	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20104	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr8.142397026.+	chr8	142397026	142397027	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-19661	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr1.10727940.-	chr1	10727940	10727941	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128793	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr2.207036843.-	chr2	207036843	207036844	-	0	NA	Intergenic	SVA_D|Other|Other	-9891	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chrX.112142840.+	chrX	112142840	112142841	+	0	NA	Intergenic	AluY|SINE|Alu	-58797	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr7.56109627.-	chr7	56109627	56109628	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9641	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr2.81982168.+	chr2	81982168	81982169	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101759	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr4.82537813.-	chr4	82537813	82537814	-	0	NA	Intergenic	AluSx|SINE|Alu	144752	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	"RasGEF domain family, member 1B"	protein-coding
chr2.137180641.+	chr2	137180641	137180642	+	0	NA	Intergenic	AluSq2|SINE|Alu	-304916	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr7.99630349.-	chr7	99630349	99630350	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	17068	NM_145914	7589	Hs.632294	NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
chr19.3551996.+	chr19	3551996	3551997	+	0	NA	"intron (NM_021731, intron 1 of 10)"	L2b|LINE|L2	5575	NM_174983	126321	Hs.656901	NM_001042680	ENSG00000161091	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
chr1.227982938.+	chr1	227982938	227982939	+	0	NA	Intergenic	Intergenic	-20480	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr2.21484579.-	chr2	21484579	21484580	-	0	NA	Intergenic	Intergenic	217634	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr9.70648670.-	chr9	70648670	70648671	-	0	NA	Intergenic	TAR1|Satellite|telo	158493	NM_201453	445571	Hs.645337	NM_201453		CBWD3	bA561O23.1	COBW domain containing 3	protein-coding
chr12.8961502.-	chr12	8961502	8961503	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	13648	NM_144670	144568	Hs.620532	NM_144670	ENSG00000166535	A2ML1	CPAMD9	alpha-2-macroglobulin-like 1	protein-coding
chr19.34310827.+	chr19	34310827	34310828	+	0	NA	Intergenic	CpG	23076	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr6.57322541.-	chr6	57322541	57322542	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140119	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr4.55034936.+	chr4	55034936	55034937	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60328	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr3.196619101.+	chr3	196619101	196619102	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24374	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr13.51885840.-	chr13	51885840	51885841	-	0	NA	Intergenic	AluSx|SINE|Alu	29328	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr2.224724707.+	chr2	224724707	224724708	+	0	NA	Intergenic	AluSp|SINE|Alu	-22388	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr7.5396336.+	chr7	5396336	5396337	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66841	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr9.128172961.+	chr9	128172961	128172962	+	0	NA	Intergenic	MIRb|SINE|MIR	148850	NM_015635	26130	Hs.495134	NM_015635	ENSG00000165219	GAPVD1	GAPEX5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
chr7.56109477.-	chr7	56109477	56109478	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9791	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr22.43506971.-	chr22	43506971	43506972	-	0	NA	"intron (NM_001197, intron 1 of 4)"	CpG	-217	NM_001197	638	Hs.475055	NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2-interacting killer (apoptosis-inducing)	protein-coding
chr14.23844989.+	chr14	23844989	23844990	+	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	-1028	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr1.1655648.+	chr1	1655648	1655649	+	0	NA	TTS (NM_001199787)	TTS (NM_001199787)	127	NM_033486	984	Hs.709182	NM_033486	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PK58|p58|p58CDC2L1|p58CLK-1	cyclin-dependent kinase 11B	protein-coding
chrX.141491532.-	chrX	141491532	141491533	-	0	NA	Intergenic	AluY|SINE|Alu	198456	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr6.9140616.+	chr6	9140616	9140617	+	0	NA	Intergenic	Intergenic	488174	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	LINC00078|NCRNA00078	highly up-regulated in liver cancer long non-coding RNA	miscRNA
chr3.27654637.-	chr3	27654637	27654638	-	0	NA	Intergenic	AluYc|SINE|Alu	-109148	NM_005442	8320	Hs.591663	NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
chr17.41185279.+	chr17	41185279	41185280	+	0	NA	Intergenic	AluY|SINE|Alu	8021	NM_005440	8153	Hs.603111	NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
chr19.10041245.-	chr19	10041245	10041246	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5825	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr10.35223530.+	chr10	35223530	35223531	+	0	NA	Intergenic	AluSx4|SINE|Alu	-119277	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr1.43612810.+	chr1	43612810	43612811	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-784	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chr17.4708682.+	chr17	4708682	4708683	+	0	NA	Intergenic	AluSp|SINE|Alu	-1714	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr5.178157373.+	chr5	178157373	178157374	+	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	330	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr10.38249306.-	chr10	38249306	38249307	-	0	NA	"intron (NM_145011, intron 2 of 5)"	AluY|SINE|Alu	-16147	NM_145011	219749	Hs.499429	NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
chr5.179517691.-	chr5	179517691	179517692	-	0	NA	Intergenic	AluSz|SINE|Alu	18582	NM_018434	55819	Hs.484363	NM_018434	ENSG00000113269	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
chr12.34191979.+	chr12	34191979	34191980	+	0	NA	Intergenic	AluSp|SINE|Alu	16763	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr6.150275480.+	chr6	150275480	150275481	+	0	NA	Intergenic	CpG	-9663	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr17.80189255.-	chr17	80189255	80189256	-	0	NA	promoter-TSS (NM_001042423)	promoter-TSS (NM_001042423)	853	NM_001042423	9123	Hs.500761	NM_001042422	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	"solute carrier family 16, member 3 (monocarboxylic acid transporter 4)"	protein-coding
chr3.43950004.-	chr3	43950004	43950005	-	0	NA	Intergenic	LTR16A|LTR|ERVL	205700	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1	microRNA 138-1	miscRNA
chr6.126100208.+	chr6	126100208	126100209	+	0	NA	Intergenic	AluY|SINE|Alu	-2099	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr12.49035515.+	chr12	49035515	49035516	+	0	NA	Intergenic	SVA_A|Other|Other	12786	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr8.103794955.-	chr8	103794955	103794956	-	0	NA	Intergenic	Intergenic	-81442	NM_148174	51582	Hs.459106	NM_015878	ENSG00000155096	AZIN1	OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
chr14.103097672.-	chr14	103097672	103097673	-	0	NA	"intron (NM_015156, intron 2 of 11)"	AluY|SINE|Alu	-38676	NM_015156	23186	Hs.510521	NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
chr8.88096024.+	chr8	88096024	88096025	+	0	NA	"intron (NM_173538, intron 4 of 10)"	AluY|SINE|Alu	217348	NM_173538	168975	Hs.246284	NM_173538	ENSG00000176571	CNBD1	-	cyclic nucleotide binding domain containing 1	protein-coding
chr18.46969472.+	chr18	46969472	46969473	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17607	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr9.90885136.-	chr9	90885136	90885137	-	0	NA	Intergenic	AluJb|SINE|Alu	118161	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr6.45365134.-	chr6	45365134	45365135	-	0	NA	"intron (NM_001015051, intron 2 of 7)"	AluY|SINE|Alu	19346	NM_003599	8464	Hs.368325	NM_001261823		SUPT3H	SPT3|SPT3L	suppressor of Ty 3 homolog (S. cerevisiae)	protein-coding
chr17.48630992.+	chr17	48630992	48630993	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6542	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr12.112051633.+	chr12	112051633	112051634	+	0	NA	Intergenic	AluY|SINE|Alu	-14153	NM_002973	6311	Hs.76253	NM_002973	ENSG00000204842	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
chr21.47343963.-	chr21	47343963	47343964	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57700	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr2.113965291.+	chr2	113965291	113965292	+	0	NA	Intergenic	AluY|SINE|Alu	-27813	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr2.35037512.+	chr2	35037512	35037513	+	0	NA	Intergenic	AluY|SINE|Alu	-1084228	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr1.2887340.-	chr1	2887340	2887341	-	0	NA	Intergenic	Intergenic	50706	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr10.133869271.+	chr10	133869271	133869272	+	0	NA	Intergenic	Intergenic	-49042	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr9.135013572.+	chr9	135013572	135013573	+	0	NA	Intergenic	AluSz|SINE|Alu	-23762	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr7.993695.-	chr7	993695	993696	-	0	NA	"intron (NM_006869, intron 1 of 10)"	CpG	-594	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr1.28003920.-	chr1	28003920	28003921	-	0	NA	Intergenic	AluY|SINE|Alu	5196	NM_002038	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr1.59041988.-	chr1	59041988	59041989	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1178	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr7.810995.+	chr7	810995	810996	+	0	NA	"intron (NR_075098, intron 9 of 12)"	"intron (NR_075098, intron 9 of 12)"	-43682	NM_001164759	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chrX.69569669.-	chrX	69569669	69569670	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59790	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr15.75115974.-	chr15	75115974	75115975	-	0	NA	"exon (NM_021819, exon 12 of 14)"	"exon (NM_021819, exon 12 of 14)"	2977	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII	complexin 3	protein-coding
chr2.81982185.+	chr2	81982185	81982186	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1101742	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
chr22.42027274.+	chr22	42027274	42027275	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9979	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr1.212973175.-	chr1	212973175	212973176	-	0	NA	"intron (NM_001146170, intron 4 of 8)"	AluSz6|SINE|Alu	-8005	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
chr6.170547794.-	chr6	170547794	170547795	-	0	NA	Intergenic	L2b|LINE|L2	-23863	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr20.61557503.+	chr20	61557503	61557504	+	0	NA	"intron (NM_080797, intron 1 of 14)"	CpG	400	NM_001193369	11083	Hs.517172	NM_001193369	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
chr7.99630447.-	chr7	99630447	99630448	-	0	NA	"intron (NM_003439, intron 5 of 5)"	AluY|SINE|Alu	16970	NM_145914	7589	Hs.632294	NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
chr17.72203124.-	chr17	72203124	72203125	-	0	NA	"intron (NM_001035258, intron 3 of 4)"	AluY|SINE|Alu	-3329	NM_001035258	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr17.74894591.-	chr17	74894591	74894592	-	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	-25862	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr21.47403588.+	chr21	47403588	47403589	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1925	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr18.9386390.-	chr18	9386390	9386391	-	0	NA	"intron (NM_020648, intron 3 of 4)"	AluSx1|SINE|Alu	-51625	NM_020648	57045	Hs.514685	NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation homolog 1 (Drosophila)	protein-coding
chr2.97760585.+	chr2	97760585	97760586	+	0	NA	promoter-TSS (NM_199336)	promoter-TSS (NM_199336)	-3	NM_199336	151313	Hs.567723	NM_199336	ENSG00000144199	FAHD2B	-	fumarylacetoacetate hydrolase domain containing 2B	protein-coding
chr11.119091813.-	chr11	119091813	119091814	-	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	-14827	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr5.57859833.+	chr5	57859833	57859834	+	0	NA	Intergenic	SVA_A|Other|Other	-19106	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr16.2009387.-	chr16	2009387	2009388	-	0	NA	promoter-TSS (NM_004548)	promoter-TSS (NM_004548)	130	NM_004548	4716	Hs.513266	NM_004548	ENSG00000140990	NDUFB10	PDSW	"NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa"	protein-coding
chr17.48037715.+	chr17	48037715	48037716	+	0	NA	Intergenic	MIR|SINE|MIR	-8847	NM_138281	1748	Hs.591167	NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
chr15.83365846.+	chr15	83365846	83365847	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12789	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr3.122283503.+	chr3	122283503	122283504	+	0	NA	promoter-TSS (NM_031458)	promoter-TSS (NM_031458)	20	NM_001146103	83666	Hs.518200	NM_001146102	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	"poly (ADP-ribose) polymerase family, member 9"	protein-coding
chr17.47811809.-	chr17	47811809	47811810	-	0	NA	"intron (NM_030802, intron 1 of 7)"	AluYk4|SINE|Alu	26527	NM_005827	10237	Hs.154073	NM_005827		SLC35B1	UGTREL1	"solute carrier family 35, member B1"	protein-coding
chr12.58059256.-	chr12	58059256	58059257	-	0	NA	Intergenic	SVA_A|Other|Other	28482	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr1.99974249.+	chr1	99974249	99974250	+	0	NA	Intergenic	SVA_B|Other|Other	-137182	NM_017734	54873	Hs.483993	NM_017734	ENSG00000099260	PALMD	C1orf11|PALML	palmdelphin	protein-coding
chr19.4141908.+	chr19	4141908	4141909	+	0	NA	Intergenic	AluY|SINE|Alu	-11690	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chr17.76631862.+	chr17	76631862	76631863	+	0	NA	Intergenic	AluSz|SINE|Alu	-58386	NM_173628	8632	Hs.375975	NM_173628	ENSG00000187775	DNAH17	DNAHL1|DNEL2	"dynein, axonemal, heavy chain 17"	protein-coding
chr3.170096440.-	chr3	170096440	170096441	-	0	NA	"intron (NM_001145097, intron 1 of 5)"	AluSx1|SINE|Alu	-19029	NM_001248008	6498	Hs.581632	NM_001145097	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like oncogene	protein-coding
chr11.280003.+	chr11	280003	280004	+	0	NA	"intron (NM_138329, intron 3 of 7)"	CpG-3609	1433	NM_138329	171389	Hs.352611	NM_001276700	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	"NLR family, pyrin domain containing 6"	protein-coding
chr9.98268303.-	chr9	98268303	98268304	-	0	NA	"intron (NM_001083603, intron 2 of 23)"	GC_rich|Low_complexity|Low_complexity	-1178	NM_001083607	5727	Hs.494538	NM_000264	ENSG00000185920	PTCH1	BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11	patched 1	protein-coding
chrX.18849858.-	chrX	18849858	18849859	-	0	NA	Intergenic	Intergenic	58556	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr19.10941305.-	chr19	10941305	10941306	-	0	NA	"intron (NM_001190716, intron 20 of 20)"	"intron (NM_001190716, intron 20 of 20)"	-5678	NM_006858	11018	Hs.515139	NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|ST2L|Tp24	transmembrane emp24 protein transport domain containing 1	protein-coding
chr17.4697343.-	chr17	4697343	4697344	-	0	NA	Intergenic	AluY|SINE|Alu	2096	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr10.43956436.-	chr10	43956436	43956437	-	0	NA	"intron (NR_026693, intron 1 of 3)"	AluSz6|SINE|Alu	-23862	NR_026693	642819	Hs.719657	NR_026693		ZNF487P	KRBO1|ZNF487	"zinc finger protein 487, pseudogene"	pseudo
chr16.1807931.+	chr16	1807931	1807932	+	0	NA	"intron (NM_001040439, intron 9 of 30)"	"intron (NM_001040439, intron 9 of 30)"	13779	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr8.144512824.+	chr8	144512824	144512825	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-222	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.13534703.+	chr16	13534703	13534704	+	0	NA	Intergenic	AluSc|SINE|Alu	-479311	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chrX.71471024.+	chrX	71471024	71471025	+	0	NA	"intron (NM_001170747, intron 3 of 3)"	AluY|SINE|Alu	-12166	NM_017669	54821	Hs.47558	NM_001009954	ENSG00000186871	ERCC6L	PICH|RAD26L	"excision repair cross-complementing rodent repair deficiency, complementation group 6-like"	protein-coding
chr22.50655072.-	chr22	50655072	50655073	-	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	-15664	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr19.48836561.-	chr19	48836561	48836562	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7932	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr1.120270215.-	chr1	120270215	120270216	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15796	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr19.34538911.+	chr19	34538911	34538912	+	0	NA	Intergenic	AluYc|SINE|Alu	-124441	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chrX.53123427.-	chrX	53123427	53123428	-	0	NA	Intergenic	CpG	-11885	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr6.108315411.-	chr6	108315411	108315412	-	0	NA	Intergenic	AluSz|SINE|Alu	35929	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr3.192348498.+	chr3	192348498	192348499	+	0	NA	"intron (NM_004113, intron 2 of 5)"	AluY|SINE|Alu	96890	NM_004113	2257	Hs.390250	NM_004113		FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
chr9.861754.+	chr9	861754	861755	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20064	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr6.18019985.+	chr6	18019985	18019986	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-32131	NM_001243423	63971	Hs.94499	NM_001105566	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
chr13.111268288.+	chr13	111268288	111268289	+	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	357	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr2.203027110.+	chr2	203027110	203027111	+	0	NA	"intron (NM_001277372, intron 14 of 21)"	AluSx|SINE|Alu	76212	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr11.1858019.+	chr11	1858019	1858020	+	0	NA	"exon (NM_138567, exon 7 of 9)"	"exon (NM_138567, exon 7 of 9)"	-2214	NM_003282	7136	Hs.523403	NM_001145829	ENSG00000130598	TNNI2	AMCD2B|DA2B|FSSV|fsTnI	"troponin I type 2 (skeletal, fast)"	protein-coding
chr8.144512841.-	chr8	144512841	144512842	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	239	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr2.9934287.-	chr2	9934287	9934288	-	0	NA	Intergenic	Intergenic	49284	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr21.31598696.-	chr21	31598696	31598697	-	0	NA	Intergenic	AluSx4|SINE|Alu	10227	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr4.110600143.+	chr4	110600143	110600144	+	0	NA	"intron (NM_017918, intron 4 of 7)"	SVA_A|Other|Other	24486	NM_001226	839	Hs.654616	NM_001226	ENSG00000138794	CASP6	MCH2	"caspase 6, apoptosis-related cysteine peptidase"	protein-coding
chr9.16748457.+	chr9	16748457	16748458	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	122329	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr2.38595163.+	chr2	38595163	38595164	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9269	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr8.56758271.-	chr8	56758271	56758272	-	0	NA	Intergenic	AluSx3|SINE|Alu	34115	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr11.69189612.-	chr11	69189612	69189613	-	0	NA	Intergenic	Intergenic	-127990	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr3.14349508.-	chr3	14349508	14349509	-	0	NA	Intergenic	Intergenic	94598	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr17.1006534.-	chr17	1006534	1006535	-	0	NA	"intron (NM_001159746, intron 2 of 22)"	"intron (NM_001159746, intron 2 of 22)"	-5806	NM_001092	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr5.3244469.+	chr5	3244469	3244470	+	0	NA	Intergenic	AluY|SINE|Alu	291739	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr17.4926590.+	chr17	4926590	4926591	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12137	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr2.91776264.-	chr2	91776264	91776265	-	0	NA	Intergenic	Intergenic	-71711	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr2.35387136.-	chr2	35387136	35387137	-	0	NA	Intergenic	AluY|SINE|Alu	-1195577	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr11.134624882.-	chr11	134624882	134624883	-	0	NA	Intergenic	Intergenic	-318506	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	miscRNA
chr11.133788105.+	chr11	133788105	133788106	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16470	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr11.113666021.-	chr11	113666021	113666022	-	0	NA	Intergenic	AluSx|SINE|Alu	-15503	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chrX.141491541.-	chrX	141491541	141491542	-	0	NA	Intergenic	AluY|SINE|Alu	198465	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr22.38336398.-	chr22	38336398	38336399	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13256	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr11.1158805.+	chr11	1158805	1158806	+	0	NA	Intergenic	Intergenic	83930	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr8.141645307.-	chr8	141645307	141645308	-	0	NA	"intron (NM_001164623, intron 1 of 17)"	CpG	-339	NM_012154	27161	Hs.743313	NM_001164623	ENSG00000123908	AGO2	EIF2C2|Q10	argonaute RISC catalytic component 2	protein-coding
chr5.89746449.-	chr5	89746449	89746450	-	0	NA	Intergenic	AluSp|SINE|Alu	-24136	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr16.30960897.-	chr16	30960897	30960898	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-492	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr7.158670983.-	chr7	158670983	158670984	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21714	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr5.158478533.+	chr5	158478533	158478534	+	0	NA	"intron (NM_024007, intron 6 of 15)"	CpG	48255	NM_024007	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
chr22.22259601.-	chr22	22259601	22259602	-	0	NA	Intergenic	AluSq2|SINE|Alu	37631	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr5.43588037.-	chr5	43588037	43588038	-	0	NA	"intron (NR_073113, intron 1 of 2)"	AluY|SINE|Alu	14754	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
chr7.56888257.+	chr7	56888257	56888258	+	0	NA	Intergenic	Intergenic	61582	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr12.51681484.-	chr12	51681484	51681485	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17282	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr1.150158671.-	chr1	150158671	150158672	-	0	NA	Intergenic	AluY|SINE|Alu	-36501	NM_016274	51177	Hs.438824	NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|OC120	"pleckstrin homology domain containing, family O member 1"	protein-coding
chr18.76575006.+	chr18	76575006	76575007	+	0	NA	Intergenic	Intergenic	-165269	NM_171999	27164	Hs.700557	NM_171999		SALL3	ZNF796	sal-like 3 (Drosophila)	protein-coding
chrX.1379088.+	chrX	1379088	1379089	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8605	NM_172249	1438	Hs.520937	NM_001161529	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	"colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)"	protein-coding
chr1.21893052.+	chr1	21893052	21893053	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57194	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr6.24720943.-	chr6	24720943	24720944	-	0	NA	Intergenic	CpG	1540	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr1.145400444.+	chr1	145400444	145400445	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12747	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr2.203027111.+	chr2	203027111	203027112	+	0	NA	"intron (NM_001277372, intron 14 of 21)"	AluSx|SINE|Alu	76211	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr6.168352165.+	chr6	168352165	168352166	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25454	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr10.43686887.-	chr10	43686887	43686888	-	0	NA	Intergenic	AluY|SINE|Alu	-52994	NM_018590	55454	Hs.744559	NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|GALNACT-2|GALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
chr16.87360651.-	chr16	87360651	87360652	-	0	NA	Intergenic	Intergenic	9625	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
chr3.11221071.-	chr3	11221071	11221072	-	0	NA	"intron (NM_001098212, intron 1 of 1)"	AluY|SINE|Alu	-24857	NM_001098212	3269	Hs.1570	NM_000861	ENSG00000196639	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
chr17.80674794.-	chr17	80674794	80674795	-	0	NA	"intron (NM_024619, intron 1 of 5)"	CpG	-212	NM_024619	79672	Hs.31431	NM_024619	ENSG00000141560	FN3KRP	FN3KL	fructosamine 3 kinase related protein	protein-coding
chr6.57322586.-	chr6	57322586	57322587	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140164	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr22.38213277.+	chr22	38213277	38213278	+	0	NA	TTS (NM_014291)	TTS (NM_014291)	-6112	NM_003614	8484	Hs.158353	NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
chr7.150812719.-	chr7	150812719	150812720	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28893	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr17.47841335.-	chr17	47841335	47841336	-	0	NA	"exon (NM_030802, exon 1 of 8)"	"exon (NM_030802, exon 1 of 8)"	-183	NM_030802	81558	Hs.514308	NM_030802	ENSG00000121104	FAM117A	-	"family with sequence similarity 117, member A"	protein-coding
chr17.21027146.+	chr17	21027146	21027147	+	0	NA	Intergenic	AluSc|SINE|Alu	-3095	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr4.83939792.-	chr4	83939792	83939793	-	0	NA	Intergenic	AluSq2|SINE|Alu	5752	NM_001115007	132660	Hs.96952	NM_001115007	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120	lin-54 homolog (C. elegans)	protein-coding
chr7.100044620.+	chr7	100044620	100044621	+	0	NA	Intergenic	AluY|SINE|Alu	-10526	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr7.73508310.+	chr7	73508310	73508311	+	0	NA	"intron (NM_001204426, intron 1 of 14)"	"intron (NM_001204426, intron 1 of 14)"	824	NM_001204426	3984	Hs.647035	NM_001204426	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
chr18.13095702.-	chr18	13095702	13095703	-	0	NA	"intron (NM_032142, intron 35 of 44)"	"intron (NM_032142, intron 35 of 44)"	-104341	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr5.138944066.+	chr5	138944066	138944067	+	0	NA	"intron (NM_181838, intron 2 of 7)"	AluSx1|SINE|Alu	3315	NM_181838	7322	Hs.108332	NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
chr9.76966066.-	chr9	76966066	76966067	-	0	NA	Intergenic	AluSp|SINE|Alu	146186	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr14.105736138.+	chr14	105736138	105736139	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20397	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr3.102974034.+	chr3	102974034	102974035	+	0	NA	Intergenic	SVA_D|Other|Other	820175	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr19.58125588.+	chr19	58125588	58125589	+	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	-242	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr3.1144540.-	chr3	1144540	1144541	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9911	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr2.170666391.-	chr2	170666391	170666392	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11069	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr2.232202227.-	chr2	232202227	232202228	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25192	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr16.67519985.-	chr16	67519985	67519986	-	0	NA	Intergenic	AluY|SINE|Alu	2269	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr5.17207863.+	chr5	17207863	17207864	+	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	-9069	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr4.106031863.+	chr4	106031863	106031864	+	0	NA	Intergenic	SVA_E|Other|Other	-35169	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chrM.9332.+	chrM	9332	9333	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr9.10974544.+	chr9	10974544	10974545	+	0	NA	Intergenic	L1PBa|LINE|L1	-361821	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.86574403.+	chr8	86574403	86574404	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	339	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr14.55349962.+	chr14	55349962	55349963	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-5051	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr20.43439029.-	chr20	43439029	43439030	-	0	NA	promoter-TSS (NM_001205317)	promoter-TSS (NM_001205317)	50	NM_001205317	140730	Hs.517065	NM_001205317	ENSG00000101098	RIMS4	C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma	regulating synaptic membrane exocytosis 4	protein-coding
chr16.4835190.-	chr16	4835190	4835191	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3208	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr12.50621248.+	chr12	50621248	50621249	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4760	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr20.37101658.+	chr20	37101658	37101659	+	0	NA	"5' UTR (NM_020336, exon 1 of 30)"	"5' UTR (NM_020336, exon 1 of 30)"	172	NM_020336	57148	Hs.598850	NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta|dJ1100H13.1	"Ral GTPase activating protein, beta subunit (non-catalytic)"	protein-coding
chr19.11060588.+	chr19	11060588	11060589	+	0	NA	Intergenic	AluY|SINE|Alu	-11010	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr9.83510.-	chr9	83510	83511	-	0	NA	Intergenic	SVA_E|Other|Other	-34907	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr17.73615835.+	chr17	73615835	73615836	+	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	-13679	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr5.179383857.+	chr5	179383857	179383858	+	0	NA	"intron (NM_018434, intron 8 of 8)"	"intron (NM_018434, intron 8 of 8)"	-49001	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr1.209921029.+	chr1	209921029	209921030	+	0	NA	Intergenic	CpG	-8365	NM_025228	80342	Hs.147434	NM_025228	ENSG00000009790	TRAF3IP3	DJ434O14.3|T3JAM	TRAF3 interacting protein 3	protein-coding
chr19.6196973.-	chr19	6196973	6196974	-	0	NA	Intergenic	AluY|SINE|Alu	-61263	NM_030924	81616	Hs.465720	NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
chr17.37768962.-	chr17	37768962	37768963	-	0	NA	Intergenic	Intergenic	4787	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr12.120959433.+	chr12	120959433	120959434	+	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	7531	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr12.31079823.+	chr12	31079823	31079824	+	0	NA	promoter-TSS (NM_001080509)	promoter-TSS (NM_001080509)	-15	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
chr3.129033777.-	chr3	129033777	129033778	-	0	NA	"3' UTR (NM_006026, exon 1 of 1)"	"3' UTR (NM_006026, exon 1 of 1)"	1337	NR_026991	339942	Hs.450096	NM_001025468		H1FX-AS1	C3orf47	H1FX antisense RNA 1	miscRNA
chr6.76573410.+	chr6	76573410	76573411	+	0	NA	"intron (NM_004999, intron 16 of 34)"	AluSc|SINE|Alu	114501	NM_004999	4646	Hs.149387	NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
chr1.151573454.-	chr1	151573454	151573455	-	0	NA	Intergenic	SVA_E|Other|Other	11208	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr2.10916495.-	chr2	10916495	10916496	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36465	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr7.100210045.+	chr7	100210045	100210046	+	0	NA	promoter-TSS (NM_023948)	promoter-TSS (NM_023948)	-8	NM_001040098	64598	Hs.521086	NM_001040097	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
chr16.70148593.-	chr16	70148593	70148594	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1064	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr19.7123266.+	chr19	7123266	7123267	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53795	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr21.43593406.+	chr21	43593406	43593407	+	0	NA	Intergenic	Intergenic	-26393	NM_207627	9619	Hs.124649	NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	"ATP-binding cassette, sub-family G (WHITE), member 1"	protein-coding
chr9.15428380.+	chr9	15428380	15428381	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5598	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr7.99196179.+	chr7	99196179	99196180	+	0	NA	"intron (NM_001195542, intron 1 of 5)"	"intron (NM_001195542, intron 1 of 5)"	277	NM_001195543	100289187	Hs.729333	NM_001195541		LOC100289187	-	transmembrane protein 225-like	protein-coding
chrX.49087571.+	chrX	49087571	49087572	+	0	NA	"intron (NM_001256790, intron 3 of 47)"	"intron (NM_001256790, intron 3 of 47)"	2200	NM_001256790	778	Hs.632799	NM_001256789	ENSG00000102001	CACNA1F	AIED|COD3|COD4|CORDX|CORDX3|CSNB2|CSNB2A|CSNBX2|Cav1.4|JM8|JMC8|OA2	"calcium channel, voltage-dependent, L type, alpha 1F subunit"	protein-coding
chr20.13654590.-	chr20	13654590	13654591	-	0	NA	Intergenic	AluY|SINE|Alu	35007	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr2.61701811.+	chr2	61701811	61701812	+	0	NA	Intergenic	AluSg|SINE|Alu	-3962	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr9.16748455.-	chr9	16748455	16748456	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122331	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr5.1144383.+	chr5	1144383	1144384	+	0	NA	Intergenic	Intergenic	-32211	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr1.181058717.+	chr1	181058717	181058718	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1079	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr5.171395341.+	chr5	171395341	171395342	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38536	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr7.56437996.-	chr7	56437996	56437997	-	0	NA	Intergenic	Intergenic	-78072	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr3.13454495.-	chr3	13454495	13454496	-	0	NA	"intron (NM_024923, intron 1 of 39)"	AluSx4|SINE|Alu	-7314	NM_024923	23225	Hs.475525	NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210kDa	protein-coding
chr10.135031521.+	chr10	135031521	135031522	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12257	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr13.19728181.-	chr13	19728181	19728182	-	0	NA	Intergenic	Intergenic	-11059	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr2.20424102.+	chr2	20424102	20424103	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	825	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr19.3219060.-	chr19	3219060	3219061	-	0	NA	Intergenic	AluY|SINE|Alu	5641	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr1.54953547.+	chr1	54953547	54953548	+	0	NA	Intergenic	Intergenic	-60260	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr15.93372470.-	chr15	93372470	93372471	-	0	NA	Intergenic	AluSg|SINE|Alu	-33756	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr14.105631808.-	chr14	105631808	105631809	-	0	NA	"intron (NM_145159, intron 2 of 24)"	"intron (NM_145159, intron 2 of 24)"	-3353	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr7.158670987.+	chr7	158670987	158670988	+	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	21718	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr5.693674.-	chr5	693674	693675	-	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	164	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr13.111268312.-	chr13	111268312	111268313	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-381	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr1.31727341.-	chr1	31727341	31727342	-	0	NA	Intergenic	AluY|SINE|Alu	14607	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr12.34492673.+	chr12	34492673	34492674	+	0	NA	Intergenic	GSATII|Satellite|centr	317457	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr7.32931085.-	chr7	32931085	32931086	-	0	NA	"intron (NM_015483, intron 1 of 3)"	CpG	-383	NM_015483	25948	Hs.372541	NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB (POZ) domain containing 2	protein-coding
chr1.247465337.+	chr1	247465337	247465338	+	0	NA	"intron (NM_032752, intron 8 of 8)"	"intron (NM_032752, intron 8 of 8)"	29708	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr20.62512952.-	chr20	62512952	62512953	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	13503	NM_025219	80331	Hs.164419	NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL	"DnaJ (Hsp40) homolog, subfamily C, member 5"	protein-coding
chr11.41260586.-	chr11	41260586	41260587	-	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	-220600	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr15.73830915.-	chr15	73830915	73830916	-	0	NA	"intron (NM_001042367, intron 2 of 5)"	AluYk4|SINE|Alu	-94838	NM_012428	27020	Hs.187866	NM_001161363	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
chr18.2377811.-	chr18	2377811	2377812	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193678	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr9.139071870.+	chr9	139071870	139071871	+	0	NA	Intergenic	Intergenic	23134	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr8.22298883.-	chr8	22298883	22298884	-	0	NA	"5' UTR (NM_005605, exon 1 of 14)"	"5' UTR (NM_005605, exon 1 of 14)"	-400	NM_001243974	5533	Hs.731683	NM_001243974	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	"protein phosphatase 3, catalytic subunit, gamma isozyme"	protein-coding
chrX.53111595.+	chrX	53111595	53111596	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	53	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chrX.53111658.+	chrX	53111658	53111659	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	116	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr20.4699500.+	chr20	4699500	4699501	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3056	NM_012409	23627	Hs.406696	NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion protein 2 (dublet)	protein-coding
chr20.60623997.+	chr20	60623997	60623998	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16869	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr19.33747655.-	chr19	33747655	33747656	-	0	NA	Intergenic	Intergenic	30899	NM_019849	56301	Hs.58679	NM_019849	ENSG00000130876	SLC7A10	HASC-1|asc-1	"solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10"	protein-coding
chr21.47403560.-	chr21	47403560	47403561	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1897	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr7.5610931.-	chr7	5610931	5610932	-	0	NA	Intergenic	AluSx1|SINE|Alu	21505	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr9.105365779.-	chr9	105365779	105365780	-	0	NA	Intergenic	SVA_B|Other|Other	391814	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr9.138379047.+	chr9	138379047	138379048	+	0	NA	"exon (NM_014811, exon 4 of 4)"	"exon (NM_014811, exon 4 of 4)"	7399	NM_014811	9858	Hs.533260	NM_014811	ENSG00000196422	PPP1R26	KIAA0649	"protein phosphatase 1, regulatory subunit 26"	protein-coding
chr1.10888928.-	chr1	10888928	10888929	-	0	NA	Intergenic	Intergenic	32195	NM_017766	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr3.115832412.+	chr3	115832412	115832413	+	0	NA	"intron (NM_002338, intron 1 of 6)"	AluYa5|SINE|Alu	331973	NM_002338	4045	Hs.723683	NM_002338		LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
chr16.23194440.-	chr16	23194440	23194441	-	0	NA	"intron (NM_001039, intron 1 of 12)"	CpG	-400	NM_001039	6340	Hs.371727	NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|PHA1|SCNEG	"sodium channel, non-voltage-gated 1, gamma subunit"	protein-coding
chr12.16474295.+	chr12	16474295	16474296	+	0	NA	Intergenic	AluY|SINE|Alu	-25781	NM_145792	4257	Hs.389700	NM_001260511	ENSG00000008394	MGST1	GST12|MGST|MGST-I	microsomal glutathione S-transferase 1	protein-coding
chr2.20424070.+	chr2	20424070	20424071	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	857	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr19.19410448.+	chr19	19410448	19410449	+	0	NA	"intron (NM_172231, intron 7 of 13)"	AluY|SINE|Alu	20873	NM_172231	57794	Hs.515274	NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G patch domain containing 1	protein-coding
chr20.3879938.+	chr20	3879938	3879939	+	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	9475	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr9.719220.+	chr9	719220	719221	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12414	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr10.20638029.-	chr10	20638029	20638030	-	0	NA	Intergenic	Intergenic	202870	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr3.50193013.-	chr3	50193013	50193014	-	0	NA	"intron (NM_004186, intron 1 of 18)"	CpG	-165	NM_004186	6405	Hs.32981	NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F"	protein-coding
chr2.65087239.+	chr2	65087239	65087240	+	0	NA	Intergenic	Intergenic	72342	NR_036586	400958	Hs.591565	NR_036586		LOC400958	-	uncharacterized LOC400958	miscRNA
chr7.102089893.+	chr7	102089893	102089894	+	0	NA	"3' UTR (NM_001271818, exon 4 of 4)"	"3' UTR (NM_001271818, exon 4 of 4)"	15428	NM_017621	54784	Hs.658598	NM_017621	ENSG00000160993	ALKBH4	ABH4	"alkB, alkylation repair homolog 4 (E. coli)"	protein-coding
chrX.128371061.-	chrX	128371061	128371062	-	0	NA	Intergenic	AluSq4|SINE|Alu	-286399	NM_139035	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1"	protein-coding
chr19.9129860.-	chr19	9129860	9129861	-	0	NA	Intergenic	AluJo|SINE|Alu	37842	NM_024690	94025	Hs.432676	NM_024690	ENSG00000181143	MUC16	CA125	"mucin 16, cell surface associated"	protein-coding
chrM.6552.+	chrM	6552	6553	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr10.135017597.-	chr10	135017597	135017598	-	0	NA	"intron (NM_152643, intron 17 of 29)"	"intron (NM_152643, intron 17 of 29)"	26181	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr19.1252669.-	chr19	1252669	1252670	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4117	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr20.3219200.-	chr20	3219200	3219201	-	0	NA	promoter-TSS (NM_001174090)	promoter-TSS (NM_001174090)	365	NM_001174090	83959	Hs.105607	NM_001174089	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	"solute carrier family 4, sodium borate transporter, member 11"	protein-coding
chr10.129149280.+	chr10	129149280	129149281	+	0	NA	"intron (NM_001380, intron 31 of 51)"	MIRb|SINE|MIR	-154858	NM_001039762	642938	Hs.613882	NM_001039762	ENSG00000188916	FAM196A	C10orf141	"family with sequence similarity 196, member A"	protein-coding
chr10.8092190.+	chr10	8092190	8092191	+	0	NA	TTS (NR_024256)	TTS (NR_024256)	3257	NR_024255	399717	Hs.669736	NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	miscRNA
chr9.121872041.-	chr9	121872041	121872042	-	0	NA	Intergenic	AluYk4|SINE|Alu	-259698	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr19.19221436.-	chr19	19221436	19221437	-	0	NA	"exon (NM_178526, exon 8 of 8)"	"exon (NM_178526, exon 8 of 8)"	-27874	NM_001256766	54929	Hs.631629	NM_001256766	ENSG00000064545	TMEM161A	AROS-29	transmembrane protein 161A	protein-coding
chr7.1474632.+	chr7	1474632	1474633	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24477	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr11.75378686.-	chr11	75378686	75378687	-	0	NA	"exon (NM_207577, exon 1 of 3)"	"exon (NM_207577, exon 1 of 3)"	-793	NM_207577	4135	Hs.585540	NM_033063	ENSG00000171533	MAP6	MTAP6|N-STOP|STOP	microtubule-associated protein 6	protein-coding
chr1.154218115.-	chr1	154218115	154218116	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	AluY|SINE|Alu	-24790	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr11.16894169.+	chr11	16894169	16894170	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	134021	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr7.56423473.-	chr7	56423473	56423474	-	0	NA	Intergenic	AluSx1|SINE|Alu	-92595	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr7.1033083.-	chr7	1033083	1033084	-	0	NA	Intergenic	Intergenic	-10248	NM_017781	54905	Hs.272795	NM_017781	ENSG00000073067	CYP2W1	-	"cytochrome P450, family 2, subfamily W, polypeptide 1"	protein-coding
chr3.160673507.+	chr3	160673507	160673508	+	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	149176	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr21.42046718.-	chr21	42046718	42046719	-	0	NA	"intron (NM_001389, intron 3 of 32)"	AluY|SINE|Alu	44025	NR_046774	100874326	Hs.679746	NR_046774		DSCAM-IT1	zag4	DSCAM intronic transcript 1 (non-protein coding)	miscRNA
chr14.23845007.+	chr14	23845007	23845008	+	0	NA	"exon (NM_022789, exon 2 of 2)"	"exon (NM_022789, exon 2 of 2)"	-1010	NM_001037288	116173	Hs.99272	NM_001037288	ENSG00000166091	CMTM5	CKLFSF5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding
chr20.58515239.-	chr20	58515239	58515240	-	0	NA	promoter-TSS (NM_022106)	promoter-TSS (NM_022106)	-113	NM_006242	5509	Hs.42215	NM_006242	ENSG00000132825	PPP1R3D	PPP1R6	"protein phosphatase 1, regulatory subunit 3D"	protein-coding
chr14.55349944.-	chr14	55349944	55349945	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5033	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr8.100115817.-	chr8	100115817	100115818	-	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	-90323	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr16.49498956.-	chr16	49498956	49498957	-	0	NA	Intergenic	CpG	-91148	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr4.1626814.-	chr4	1626814	1626815	-	0	NA	Intergenic	CpG	-58904	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr18.77627545.+	chr18	77627545	77627546	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3877	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr17.28541760.+	chr17	28541760	28541761	+	0	NA	"intron (NM_001045, intron 8 of 14)"	AluY|SINE|Alu	21226	NM_001045	6532	Hs.134662	NM_001045	ENSG00000108576	SLC6A4	5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT	"solute carrier family 6 (neurotransmitter transporter, serotonin), member 4"	protein-coding
chr9.141038870.-	chr9	141038870	141038871	-	0	NA	Intergenic	Intergenic	5695	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr5.32209039.+	chr5	32209039	32209040	+	0	NA	Intergenic	SVA_F|Other|Other	-34614	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
chr1.55505947.-	chr1	55505947	55505948	-	0	NA	"intron (NM_174936, intron 1 of 11)"	CpG	-798	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr17.3317623.-	chr17	3317623	3317624	-	0	NA	Intergenic	AluSc8|SINE|Alu	6239	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr15.41687834.-	chr15	41687834	41687835	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6824	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr16.88000382.+	chr16	88000382	88000383	+	0	NA	"intron (NM_001173542, intron 1 of 12)"	"intron (NM_001173542, intron 1 of 12)"	-3242	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr4.149686295.+	chr4	149686295	149686296	+	0	NA	Intergenic	AluJb|SINE|Alu	-322623	NM_001166104	4306	Hs.163924	NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	"nuclear receptor subfamily 3, group C, member 2"	protein-coding
chr1.43887019.-	chr1	43887019	43887020	-	0	NA	"intron (NM_015284, intron 11 of 70)"	"intron (NM_015284, intron 11 of 70)"	-31463	NM_015284	23334	Hs.643560	NM_015284	ENSG00000198198	SZT2	C1orf84|KIAA0467|RP11-506B15.3|SZT2A|SZT2B	seizure threshold 2 homolog (mouse)	protein-coding
chrX.53123432.-	chrX	53123432	53123433	-	0	NA	Intergenic	CpG	-11890	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr8.56758270.-	chr8	56758270	56758271	-	0	NA	Intergenic	AluSx3|SINE|Alu	34116	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr1.52661756.-	chr1	52661756	52661757	-	0	NA	"intron (NM_004799, intron 1 of 18)"	AluSg|SINE|Alu	-53710	NM_007323	9372	Hs.532345	NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|SARA|SMADIP	"zinc finger, FYVE domain containing 9"	protein-coding
chr20.5297687.+	chr20	5297687	5297688	+	0	NA	Intergenic	CpG	-2672	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr17.7246089.-	chr17	7246089	7246090	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6241	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr2.172723040.-	chr2	172723040	172723041	-	0	NA	"intron (NM_003705, intron 3 of 17)"	SVA_D|Other|Other	-27776	NR_047549	8604	Hs.470608	NM_003705		SLC25A12	AGC1|ARALAR	"solute carrier family 25 (aspartate/glutamate carrier), member 12"	protein-coding
chr6.108315281.-	chr6	108315281	108315282	-	0	NA	Intergenic	AluSz|SINE|Alu	35799	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr3.42642481.-	chr3	42642481	42642482	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-91	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr9.136412140.+	chr9	136412140	136412141	+	0	NA	"intron (NM_001145320, intron 8 of 18)"	"intron (NM_001145320, intron 8 of 18)"	12165	NM_014694	9719	Hs.522543	NM_001145320	ENSG00000197859	ADAMTSL2	GPHYSD1	ADAMTS-like 2	protein-coding
chr16.4823703.-	chr16	4823703	4823704	-	0	NA	Intergenic	AluSq2|SINE|Alu	6537	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chrY.59004221.-	chrY	59004221	59004222	-	0	NA	Intergenic	AluSq2|SINE|Alu	96236	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
chrX.7055267.-	chrX	7055267	7055268	-	0	NA	"intron (NM_001135565, intron 1 of 4)"	AluSq2|SINE|Alu	10634	NR_039924	100616467		NR_039924	ENSG00000264268	MIR4767	-	microRNA 4767	miscRNA
chr9.139609400.-	chr9	139609400	139609401	-	0	NA	"intron (NM_152421, intron 1 of 4)"	"intron (NM_152421, intron 1 of 4)"	-2376	NM_152421	138311	Hs.741305	NM_152421		FAM69B	C9orf136|pp6977	"family with sequence similarity 69, member B"	protein-coding
chr17.4697382.+	chr17	4697382	4697383	+	0	NA	Intergenic	AluY|SINE|Alu	-2057	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr4.971034.+	chr4	971034	971035	+	0	NA	Intergenic	MER82|DNA|TcMar-Tigger	-3686	NM_001347	1609	Hs.584858	NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	"diacylglycerol kinase, theta 110kDa"	protein-coding
chr2.120775610.+	chr2	120775610	120775611	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4825	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr2.207036851.-	chr2	207036851	207036852	-	0	NA	Intergenic	SVA_D|Other|Other	-9899	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr1.40259985.-	chr1	40259985	40259986	-	0	NA	Intergenic	AluY|SINE|Alu	5452	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr10.35559754.+	chr10	35559754	35559755	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23801	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr2.237068218.-	chr2	237068218	237068219	-	0	NA	Intergenic	CpG	-8434	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr22.20137578.-	chr22	20137578	20137579	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	147	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr13.32980211.-	chr13	32980211	32980212	-	0	NA	"intron (NM_052818, intron 3 of 4)"	AluY|SINE|Alu	-22104	NM_052818	90634	Hs.732118	NM_001079691	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
chr13.96681133.+	chr13	96681133	96681134	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24603	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr11.28078802.+	chr11	28078802	28078803	+	0	NA	TTS (NR_030341)	TTS (NR_030341)	440	NR_030341	693195		NR_030341	ENSG00000207874	MIR610	MIRN610|hsa-mir-610	microRNA 610	miscRNA
chr19.18831467.+	chr19	18831467	18831468	+	0	NA	"intron (NM_015321, intron 1 of 13)"	AluY|SINE|Alu	37042	NM_001098482	23373	Hs.371096	NM_025021	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
chr12.133328274.-	chr12	133328274	133328275	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10177	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chrX.70493582.-	chrX	70493582	70493583	-	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	9460	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr8.141276696.+	chr8	141276696	141276697	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191165	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr20.20772512.+	chr20	20772512	20772513	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79246	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr21.37865458.+	chr21	37865458	37865459	+	0	NA	"intron (NM_001146077, intron 2 of 2)"	"intron (NM_001146077, intron 2 of 2)"	-13070	NM_001146079	23562	Hs.741857	NM_001146077	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
chr19.1470906.+	chr19	1470906	1470907	+	0	NA	"3' UTR (NM_005883, exon 15 of 15)"	"3' UTR (NM_005883, exon 15 of 15)"	8322	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
chr18.11959856.+	chr18	11959856	11959857	+	0	NA	Intergenic	SVA_D|Other|Other	-21571	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr4.166248574.+	chr4	166248574	166248575	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-244	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr9.139555597.-	chr9	139555597	139555598	-	0	NA	"intron (NR_046367, intron 1 of 9)"	"intron (NR_046367, intron 1 of 9)"	1782	NM_016215	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr21.46737196.-	chr21	46737196	46737197	-	0	NA	Intergenic	Intergenic	-29229	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr13.66584774.-	chr13	66584774	66584775	-	0	NA	Intergenic	AluY|SINE|Alu	814527	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr20.33726557.-	chr20	33726557	33726558	-	0	NA	"intron (NM_001145025, intron 3 of 9)"	AluY|SINE|Alu	-8604	NR_026728	55741	Hs.720177	NM_001145025	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	"ER degradation enhancer, mannosidase alpha-like 2"	protein-coding
chr7.5570044.+	chr7	5570044	5570045	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	188	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr9.17031202.-	chr9	17031202	17031203	-	0	NA	Intergenic	AluY|SINE|Alu	103836	NM_017738	54875	Hs.435381	NM_001114395	ENSG00000044459	CNTLN	C9orf101|C9orf39|RP11-340N12.1|bA340N12.1	"centlein, centrosomal protein"	protein-coding
chr22.41215502.-	chr22	41215502	41215503	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	110	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr6.157734054.+	chr6	157734054	157734055	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11199	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr2.217746790.+	chr2	217746790	217746791	+	0	NA	Intergenic	AluSz|SINE|Alu	-22008	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
chr17.6371744.-	chr17	6371744	6371745	-	0	NA	"intron (NM_001165966, intron 12 of 18)"	"intron (NM_001165966, intron 12 of 18)"	-24009	NM_019013	54478	Hs.592116	NM_001195228	ENSG00000129195	FAM64A	CATS|RCS1	"family with sequence similarity 64, member A"	protein-coding
chr11.66224141.+	chr11	66224141	66224142	+	0	NA	Intergenic	AluY|SINE|Alu	-9657	NM_001243135	246330	Hs.656875	NM_001098510	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
chr15.90645831.-	chr15	90645831	90645832	-	0	NA	promoter-TSS (NM_002168)	promoter-TSS (NM_002168)	123	NM_002168	3418	Hs.596461	NM_002168		IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	"isocitrate dehydrogenase 2 (NADP+), mitochondrial"	protein-coding
chr10.76620837.-	chr10	76620837	76620838	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34666	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr9.14830641.+	chr9	14830641	14830642	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51110	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr20.58244280.+	chr20	58244280	58244281	+	0	NA	"intron (NM_080672, intron 1 of 12)"	"intron (NM_080672, intron 1 of 12)"	-7436	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr9.138959050.+	chr9	138959050	138959051	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28081	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr3.9398190.-	chr3	9398190	9398191	-	0	NA	Intergenic	AluY|SINE|Alu	6527	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr5.127873823.+	chr5	127873823	127873824	+	0	NA	promoter-TSS (NM_001999)	promoter-TSS (NM_001999)	-88	NM_001999	2201	Hs.519294	NM_001999	ENSG00000138829	FBN2	CCA|DA9	fibrillin 2	protein-coding
chr11.130241852.-	chr11	130241852	130241853	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56687	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr1.110009906.-	chr1	110009906	110009907	-	0	NA	"intron (NM_001040709, intron 2 of 5)"	CpG-1399	-806	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr8.8559287.-	chr8	8559287	8559288	-	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	379	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr12.3874483.-	chr12	3874483	3874484	-	0	NA	Intergenic	AluY|SINE|Alu	12117	NM_032680	84766	Hs.504534	NM_001144959	ENSG00000130038	EFCAB4B	CRACR2A	EF-hand calcium binding domain 4B	protein-coding
chr20.50261062.+	chr20	50261062	50261063	+	0	NA	"intron (NM_006045, intron 14 of 27)"	AluY|SINE|Alu	-81692	NM_001258294	4773	Hs.744148	NM_001136021	ENSG00000101096	NFATC2	NFAT1|NFATP	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2"	protein-coding
chr22.50876257.+	chr22	50876257	50876258	+	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	37207	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr19.34287521.+	chr19	34287521	34287522	+	0	NA	promoter-TSS (NM_001129995)	promoter-TSS (NM_001129995)	-230	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr16.58288621.+	chr16	58288621	58288622	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4781	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr10.59080664.-	chr10	59080664	59080665	-	0	NA	Intergenic	Intergenic	16345	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr7.5257659.+	chr7	5257659	5257660	+	0	NA	"intron (NM_001033519, intron 6 of 11)"	"intron (NM_001033519, intron 6 of 11)"	3759	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr13.95943176.+	chr13	95943176	95943177	+	0	NA	"intron (NM_005845, intron 1 of 30)"	AluSx1|SINE|Alu	10511	NM_001105515	10257	Hs.508423	NM_001105515	ENSG00000125257	ABCC4	EST170205|MOAT-B|MOATB|MRP4	"ATP-binding cassette, sub-family C (CFTR/MRP), member 4"	protein-coding
chr16.3203705.+	chr16	3203705	3203706	+	0	NA	Intergenic	AluSg|SINE|Alu	18571	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr7.66064148.+	chr7	66064148	66064149	+	0	NA	Intergenic	AluY|SINE|Alu	-20650	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr3.1144617.-	chr3	1144617	1144618	-	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	-9988	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr1.31248115.-	chr1	31248115	31248116	-	0	NA	Intergenic	Intergenic	17432	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr6.150247115.+	chr6	150247115	150247116	+	0	NA	Intergenic	CpG	-2901	NM_001001788	353091	Hs.558792	NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
chr14.23526818.+	chr14	23526818	23526819	+	0	NA	promoter-TSS (NM_022478)	promoter-TSS (NM_022478)	-71	NM_022478	64403	Hs.155912	NM_022478	ENSG00000139880	CDH24	CDH11L	"cadherin 24, type 2"	protein-coding
chr17.4183965.-	chr17	4183965	4183966	-	0	NA	"intron (NM_003342, intron 5 of 5)"	AluSx3|SINE|Alu	16691	NM_016376	51479	Hs.696087	NM_001257999	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
chr14.93564790.+	chr14	93564790	93564791	+	0	NA	"intron (NM_014216, intron 2 of 10)"	AluY|SINE|Alu	17473	NM_001142593	3705	Hs.308122	NM_001142593	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
chr22.46326785.+	chr22	46326785	46326786	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46223	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr14.102954957.+	chr14	102954957	102954958	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21171	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr11.68671239.-	chr11	68671239	68671240	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-64	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr14.24785816.-	chr14	24785816	24785817	-	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	-3503	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr1.2628204.-	chr1	2628204	2628205	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	63723	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr10.125611159.-	chr10	125611159	125611160	-	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	-40341	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr20.19431510.+	chr20	19431510	19431511	+	0	NA	"intron (NM_020689, intron 2 of 16)"	AluSz|SINE|Alu	-166270	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	miscRNA
chr11.916043.+	chr11	916043	916044	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-985	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr16.2230656.+	chr16	2230656	2230657	+	0	NA	"exon (NM_020764, exon 18 of 20)"	"exon (NM_020764, exon 18 of 20)"	15809	NM_020764	57524	Hs.643537	NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
chr9.90472380.-	chr9	90472380	90472381	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1591	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chr1.17034279.+	chr1	17034279	17034280	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12373	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chrX.53808314.+	chrX	53808314	53808315	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94617	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr1.197754722.-	chr1	197754722	197754723	-	0	NA	Intergenic	AluY|SINE|Alu	10099	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr2.235307217.-	chr2	235307217	235307218	-	0	NA	Intergenic	Intergenic	-98476	NM_005737	10123	Hs.730678	NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
chr5.3188197.+	chr5	3188197	3188198	+	0	NA	Intergenic	CpG	348011	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr1.55505948.-	chr1	55505948	55505949	-	0	NA	"intron (NM_174936, intron 1 of 11)"	CpG	-799	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr15.56465888.-	chr15	56465888	56465889	-	0	NA	"intron (NM_022841, intron 2 of 8)"	AluSq|SINE|Alu	-69595	NM_022841	64864	Hs.282855	NM_022841	ENSG00000181827	RFX7	RFXDC2	"regulatory factor X, 7"	protein-coding
chr9.132176186.+	chr9	132176186	132176187	+	0	NA	Intergenic	CpG	-74753	NR_038955	100506190	Hs.529860	NR_038955		LOC100506190	-	uncharacterized LOC100506190	miscRNA
chr10.134785478.-	chr10	134785478	134785479	-	0	NA	"non-coding (NR_046231, exon 2 of 3)"	"non-coding (NR_046231, exon 2 of 3)"	-6440	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LOC399829	-	uncharacterized LOC399829	miscRNA
chrX.20094595.-	chrX	20094595	20094596	-	0	NA	"intron (NM_152780, intron 1 of 15)"	AluSq|SINE|Alu	-40161	NM_001168467	256714	Hs.127951	NM_001168465	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
chr1.10727923.+	chr1	10727923	10727924	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128810	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr1.156830880.+	chr1	156830880	156830881	+	0	NA	"exon (NM_002529, exon 1 of 17)"	"exon (NM_002529, exon 1 of 17)"	209	NM_002529	4914	Hs.406293	NM_001007792	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	"neurotrophic tyrosine kinase, receptor, type 1"	protein-coding
chr19.23432277.+	chr19	23432277	23432278	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	895	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr17.48631000.+	chr17	48631000	48631001	+	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	6550	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr3.102974040.-	chr3	102974040	102974041	-	0	NA	Intergenic	SVA_D|Other|Other	-820181	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr14.83280568.-	chr14	83280568	83280569	-	0	NA	Intergenic	SVA_D|Other|Other	1280363	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr9.99114723.+	chr9	99114723	99114724	+	0	NA	"intron (NM_007001, intron 4 of 11)"	AluSx|SINE|Alu	31269	NM_007001	11046	Hs.731624	NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	"solute carrier family 35, member D2"	protein-coding
chr16.15562879.+	chr16	15562879	15562880	+	0	NA	"intron (NM_033201, intron 1 of 5)"	AluSz6|SINE|Alu	-33244	NM_001142469	89927	Hs.401798	NM_001142469	ENSG00000166780	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
chr3.125203795.+	chr3	125203795	125203796	+	0	NA	"intron (NR_073435, intron 5 of 12)"	AluSx1|SINE|Alu	35263	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr18.43723394.+	chr18	43723394	43723395	+	0	NA	Intergenic	AluY|SINE|Alu	-30594	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr16.77246803.+	chr16	77246803	77246804	+	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	13454	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr7.129592442.-	chr7	129592442	129592443	-	0	NA	"5' UTR (NM_182697, exon 1 of 5)"	"5' UTR (NM_182697, exon 1 of 5)"	-341	NM_001202498	7328	Hs.643548	NM_001202498	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
chr2.242447172.-	chr2	242447172	242447173	-	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	-603	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr5.179373612.-	chr5	179373612	179373613	-	0	NA	Intergenic	AluY|SINE|Alu	38756	NM_015043	23061	Hs.155829	NM_015043	ENSG00000197226	TBC1D9B	-	"TBC1 domain family, member 9B (with GRAM domain)"	protein-coding
chr1.54333331.-	chr1	54333331	54333332	-	0	NA	"intron (NR_036639, intron 7 of 11)"	AluY|SINE|Alu	-22156	NR_036640	54432	Hs.731661	NM_018982	ENSG00000058799	YIPF1	DJ167A19.1|FinGER1	"Yip1 domain family, member 1"	protein-coding
chr3.196619085.+	chr3	196619085	196619086	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24358	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr12.117537174.-	chr12	117537174	117537175	-	0	NA	promoter-TSS (NR_031766)	promoter-TSS (NR_031766)	-77	NM_001168325	54997	Hs.525709	NM_001168325	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
chr16.4835187.-	chr16	4835187	4835188	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3211	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr1.24513588.+	chr1	24513588	24513589	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	177	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr11.69189601.-	chr11	69189601	69189602	-	0	NA	Intergenic	Intergenic	-127979	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr11.71878790.+	chr11	71878790	71878791	+	0	NA	Intergenic	AluSx|SINE|Alu	-21812	NM_016725	2348	Hs.73769	NM_000802	ENSG00000110195	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
chr13.21872277.-	chr13	21872277	21872278	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-13	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr11.47459674.+	chr11	47459674	47459675	+	0	NA	"intron (NM_032645, intron 5 of 5)"	"intron (NM_032645, intron 5 of 5)"	11056	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
chr8.142212812.+	chr8	142212812	142212813	+	0	NA	Intergenic	SVA_D|Other|Other	25861	NM_001080431	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	"solute carrier family 45, member 4"	protein-coding
chr9.136672366.-	chr9	136672366	136672367	-	0	NA	"intron (NM_001134398, intron 8 of 29)"	"intron (NM_001134398, intron 8 of 29)"	67289	NM_007101	1757	Hs.198003	NM_001134707	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
chr19.267123.+	chr19	267123	267124	+	0	NA	Intergenic	CpG	24046	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr19.3766733.-	chr19	3766733	3766734	-	0	NA	"intron (NM_172251, intron 2 of 2)"	L2b|LINE|L2	-4068	NM_172251	116541	Hs.356578	NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54	mitochondrial ribosomal protein L54	protein-coding
chr1.248394301.-	chr1	248394301	248394302	-	0	NA	Intergenic	AluSc8|SINE|Alu	7930	NM_017504	26245	Hs.381309	NM_017504	ENSG00000171180	OR2M4	HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100	"olfactory receptor, family 2, subfamily M, member 4"	protein-coding
chr1.937263.+	chr1	937263	937264	+	0	NA	Intergenic	CpG-24	-1711	NM_021170	57801	Hs.154029	NM_001142467	ENSG00000188290	HES4	bHLHb42	hairy and enhancer of split 4 (Drosophila)	protein-coding
chr20.1317910.+	chr20	1317910	1317911	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-8031	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr3.15431317.-	chr3	15431317	15431318	-	0	NA	Intergenic	AluSp|SINE|Alu	-37725	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr6.160985726.+	chr6	160985726	160985727	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53570	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr10.24476782.+	chr10	24476782	24476783	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20938	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr1.51984050.+	chr1	51984050	51984051	+	0	NA	"intron (NM_001981, intron 1 of 24)"	"intron (NM_001981, intron 1 of 24)"	945	NM_001981	2060	Hs.83722	NM_001159969	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
chr9.83293393.+	chr9	83293393	83293394	+	0	NA	Intergenic	AluSc|SINE|Alu	1010203	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr22.37053557.+	chr22	37053557	37053558	+	0	NA	"intron (NM_006078, intron 1 of 3)"	"intron (NM_006078, intron 1 of 3)"	45133	NM_006078	10369	Hs.146766	NM_006078		CACNG2	MRD10	"calcium channel, voltage-dependent, gamma subunit 2"	protein-coding
chr7.5244762.-	chr7	5244762	5244763	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9138	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr14.106359678.-	chr14	106359678	106359679	-	0	NA	Intergenic	Intergenic	24160	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr10.121799459.+	chr10	121799459	121799460	+	0	NA	Intergenic	AluSz6|SINE|Alu	81434	NR_039830	100616322		NR_039830	ENSG00000265370	MIR4682	-	microRNA 4682	miscRNA
chr7.97736463.+	chr7	97736463	97736464	+	0	NA	"5' UTR (NM_014916, exon 1 of 14)"	"5' UTR (NM_014916, exon 1 of 14)"	266	NM_014916	22853	Hs.444179	NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|cprk	lemur tyrosine kinase 2	protein-coding
chrX.81762746.+	chrX	81762746	81762747	+	0	NA	Intergenic	AluY|SINE|Alu	-1000523	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr9.14830614.+	chr9	14830614	14830615	+	0	NA	"intron (NM_144966, intron 11 of 37)"	"intron (NM_144966, intron 11 of 37)"	-51083	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr9.138065714.+	chr9	138065714	138065715	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7741	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr15.93372501.+	chr15	93372501	93372502	+	0	NA	Intergenic	AluSg|SINE|Alu	33787	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr6.170055318.-	chr6	170055318	170055319	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46841	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr16.4823700.-	chr16	4823700	4823701	-	0	NA	Intergenic	AluSq2|SINE|Alu	6534	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr16.22879705.-	chr16	22879705	22879706	-	0	NA	"intron (NM_006043, intron 1 of 1)"	AluSc|SINE|Alu	-53845	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr6.108279994.+	chr6	108279994	108279995	+	0	NA	promoter-TSS (NM_007214)	promoter-TSS (NM_007214)	-512	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr5.171395351.-	chr5	171395351	171395352	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38526	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr11.1266529.-	chr11	1266529	1266530	-	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	-22234	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr19.7123256.+	chr19	7123256	7123257	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53785	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr1.10989811.+	chr1	10989811	10989812	+	0	NA	Intergenic	AluSq|SINE|Alu	52283	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chr9.121440493.-	chr9	121440493	121440494	-	0	NA	Intergenic	SVA_B|Other|Other	-691246	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr9.34329746.+	chr9	34329746	34329747	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	242	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr6.133874065.-	chr6	133874065	133874066	-	0	NA	Intergenic	AluY|SINE|Alu	268220	NR_027030	154089	Hs.126165	NR_027030		MGC34034	-	uncharacterized protein MGC34034	miscRNA
chr3.102973978.+	chr3	102973978	102973979	+	0	NA	Intergenic	SVA_D|Other|Other	820119	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr6.168209558.+	chr6	168209558	168209559	+	0	NA	Intergenic	AluSq|SINE|Alu	-12019	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr7.61969337.+	chr7	61969337	61969338	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795097	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr11.46919674.-	chr11	46919674	46919675	-	0	NA	"intron (NM_002334, intron 7 of 37)"	SVA_D|Other|Other	-20499	NM_002334	4038	Hs.4930	NM_002334	ENSG00000134569	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
chr9.129229409.+	chr9	129229409	129229410	+	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	-56626	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr11.68303184.-	chr11	68303184	68303185	-	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	-74998	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chrX.53123344.+	chrX	53123344	53123345	+	0	NA	Intergenic	CpG	11802	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.170666420.-	chr2	170666420	170666421	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11098	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr11.1122290.-	chr11	1122290	1122291	-	0	NA	Intergenic	Intergenic	-47415	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr2.87655687.+	chr2	87655687	87655688	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-99287	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr4.619382.-	chr4	619382	619383	-	0	NA	promoter-TSS (NM_001145291)	promoter-TSS (NM_001145291)	-19	NM_001145291	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr8.43413748.-	chr8	43413748	43413749	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266163	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr7.1798892.-	chr7	1798892	1798893	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50094	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr9.129229403.-	chr9	129229403	129229404	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56620	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr22.24323638.-	chr22	24323638	24323639	-	0	NA	"intron (NM_000854, intron 2 of 4)"	AluY|SINE|Alu	-1324	NM_000854	2953	Hs.654462	NM_000854	ENSG00000099984	GSTT2	GSTT2B	glutathione S-transferase theta 2	protein-coding
chr4.77662428.+	chr4	77662428	77662429	+	0	NA	"exon (NM_020859, exon 5 of 11)"	"exon (NM_020859, exon 5 of 11)"	156574	NM_001029870	345079	Hs.257292	NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
chr1.114299529.-	chr1	114299529	114299530	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2248	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr1.40506587.+	chr1	40506587	40506588	+	0	NA	"intron (NM_006367, intron 1 of 12)"	CpG	332	NM_006367	10487	Hs.713078	NM_001105530	ENSG00000131236	CAP1	CAP|CAP1-PEN	"CAP, adenylate cyclase-associated protein 1 (yeast)"	protein-coding
chr19.10380376.+	chr19	10380376	10380377	+	0	NA	Intergenic	CpG	-1141	NM_000201	3383	Hs.643447	NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
chr17.22012670.+	chr17	22012670	22012671	+	0	NA	Intergenic	Intergenic	-9767	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr1.62231182.+	chr1	62231182	62231183	+	0	NA	"intron (NM_176877, intron 3 of 42)"	AluSx|SINE|Alu	23033	NM_176877	10207	Hs.478125	NM_176877	ENSG00000132849	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
chr5.89746531.+	chr5	89746531	89746532	+	0	NA	Intergenic	AluSz|SINE|Alu	24054	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr14.95929348.-	chr14	95929348	95929349	-	0	NA	"intron (NM_152592, intron 3 of 16)"	AluSp|SINE|Alu	-12825	NM_152592	161176	Hs.354645	NM_152592	ENSG00000176438	SYNE3	C14orf49|NET53|Nesp3	"spectrin repeat containing, nuclear envelope family member 3"	protein-coding
chr18.33543841.+	chr18	33543841	33543842	+	0	NA	Intergenic	AluY|SINE|Alu	-8747	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr2.157198783.+	chr2	157198783	157198784	+	0	NA	Intergenic	CpG	-9496	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr5.2391233.+	chr5	2391233	2391234	+	0	NA	Intergenic	Intergenic	360536	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr1.110881104.-	chr1	110881104	110881105	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-689	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr17.65843568.-	chr17	65843568	65843569	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21788	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr12.49857022.+	chr12	49857022	49857023	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	74065	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr10.8150563.+	chr10	8150563	8150564	+	0	NA	Intergenic	AluY|SINE|Alu	53896	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr18.5295581.+	chr18	5295581	5295582	+	0	NA	"intron (NM_001243704, intron 1 of 3)"	CpG	120	NM_001243702	7541	Hs.592340	NM_001143823	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
chr11.120093170.-	chr11	120093170	120093171	-	0	NA	"intron (NM_178507, intron 1 of 3)"	AluSx|SINE|Alu	-11423	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr7.130728472.-	chr7	130728472	130728473	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	-63317	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr6.127845958.-	chr6	127845958	127845959	-	0	NA	Intergenic	AluY|SINE|Alu	5458	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr8.86089536.+	chr8	86089536	86089537	+	0	NA	promoter-TSS (NM_001951)	promoter-TSS (NM_001951)	-83	NM_001083588	1875	Hs.445758	NM_001083588	ENSG00000133740	E2F5	E2F-5	"E2F transcription factor 5, p130-binding"	protein-coding
chr9.135947018.+	chr9	135947018	135947019	+	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	9653	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr1.153574080.+	chr1	153574080	153574081	+	0	NA	Intergenic	AluY|SINE|Alu	11434	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr6.55775069.-	chr6	55775069	55775070	-	0	NA	Intergenic	SVA_D|Other|Other	34694	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr11.638954.+	chr11	638954	638955	+	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	1649	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr19.38865679.+	chr19	38865679	38865680	+	0	NA	"intron (NM_002812, intron 1 of 6)"	CpG	489	NM_002812	5714	Hs.78466	NM_002812	ENSG00000099341	PSMD8	HIP6|HYPF|Nin1p|Rpn12|S14|p31	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 8"	protein-coding
chr7.936434.+	chr7	936434	936435	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20243	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chrX.144903019.+	chrX	144903019	144903020	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	153	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr12.96899045.+	chr12	96899045	96899046	+	0	NA	Intergenic	AluSg|SINE|Alu	-104679	NM_001170464	5128	Hs.506415	NM_001170464	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
chr9.135013571.-	chr9	135013571	135013572	-	0	NA	Intergenic	AluSz|SINE|Alu	23763	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr10.126327841.+	chr10	126327841	126327842	+	0	NA	"intron (NM_014661, intron 4 of 4)"	"intron (NM_014661, intron 4 of 4)"	105089	NM_014661	9679	Hs.129195	NM_014661	ENSG00000189319	FAM53B	KIAA0140|RP11-12J10.2|bA12J10.2	"family with sequence similarity 53, member B"	protein-coding
chr8.107670096.-	chr8	107670096	107670097	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-60	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr21.45684316.-	chr21	45684316	45684317	-	0	NA	Intergenic	AluY|SINE|Alu	2217	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr17.57884711.+	chr17	57884711	57884712	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33916	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr18.70912392.-	chr18	70912392	70912393	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19341	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr19.49186318.+	chr19	49186318	49186319	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10054	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr1.236445209.-	chr1	236445209	236445210	-	0	NA	"5' UTR (NM_019891, exon 1 of 16)"	"5' UTR (NM_019891, exon 1 of 16)"	-130	NM_019891	56605	Hs.558519	NM_019891	ENSG00000086619	ERO1LB	-	ERO1-like beta (S. cerevisiae)	protein-coding
chr11.67211058.-	chr11	67211058	67211059	-	0	NA	promoter-TSS (NM_020441)	promoter-TSS (NM_020441)	75	NM_020441	57175	Hs.6191	NM_001018070	ENSG00000172725	CORO1B	CORONIN-2	"coronin, actin binding protein, 1B"	protein-coding
chr6.70692611.+	chr6	70692611	70692612	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116163	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr11.47788896.-	chr11	47788896	47788897	-	0	NA	promoter-TSS (NM_015308)	promoter-TSS (NM_015308)	-97	NM_015308	23360	Hs.6834	NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
chr19.1592293.-	chr19	1592293	1592294	-	0	NA	"intron (NM_003926, intron 1 of 5)"	CpG	-359	NM_003926	53615	Hs.178728	NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
chr4.55034934.-	chr4	55034934	55034935	-	0	NA	Intergenic	AluSx3|SINE|Alu	60330	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr5.98663013.+	chr5	98663013	98663014	+	0	NA	Intergenic	AluSx|SINE|Alu	398175	NR_036530	100289230	Hs.552095	NR_036530		LOC100289230	-	uncharacterized LOC100289230	miscRNA
chr2.10916521.+	chr2	10916521	10916522	+	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	36439	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr3.36494719.-	chr3	36494719	36494720	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72622	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr16.30934047.+	chr16	30934047	30934048	+	0	NA	promoter-TSS (NR_073401)	promoter-TSS (NR_073401)	-345	NR_073401	54620	Hs.152149	NM_001099784	ENSG00000099364	FBXL19	Fbl19|JHDM1C	F-box and leucine-rich repeat protein 19	protein-coding
chr16.632137.-	chr16	632137	632138	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7220	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr5.14460425.+	chr5	14460425	14460426	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121466	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr12.34501210.-	chr12	34501210	34501211	-	0	NA	Intergenic	GSATII|Satellite|centr	-325994	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr6.114067415.-	chr6	114067415	114067416	-	0	NA	Intergenic	AluY|SINE|Alu	111112	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr9.100092087.+	chr9	100092087	100092088	+	0	NA	"intron (NR_036529, intron 27 of 44)"	AluY|SINE|Alu	22177	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
chr9.120507311.+	chr9	120507311	120507312	+	0	NA	Intergenic	CpG	40858	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr18.45354127.+	chr18	45354127	45354128	+	0	NA	Intergenic	SVA_B|Other|Other	102843	NM_005901	4087	Hs.741342	NM_001003652	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
chr5.43588006.+	chr5	43588006	43588007	+	0	NA	"intron (NR_073113, intron 1 of 2)"	AluY|SINE|Alu	-14785	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
chr2.240980383.-	chr2	240980383	240980384	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2016	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr9.137200928.-	chr9	137200928	137200929	-	0	NA	Intergenic	Intergenic	17388	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr3.149374884.+	chr3	149374884	149374885	+	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	928	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr6.170764119.+	chr6	170764119	170764120	+	0	NA	Intergenic	Intergenic	98298	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	"proteasome (prosome, macropain) subunit, beta type, 1"	protein-coding
chr7.993299.-	chr7	993299	993300	-	0	NA	"intron (NM_006869, intron 1 of 10)"	"intron (NM_006869, intron 1 of 10)"	-990	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr15.100080038.-	chr15	100080038	100080039	-	0	NA	Intergenic	AluSq2|SINE|Alu	26095	NM_005587	4205	Hs.268675	NM_001130926	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
chr17.65020814.-	chr17	65020814	65020815	-	0	NA	"intron (NM_014405, intron 2 of 3)"	"intron (NM_014405, intron 2 of 3)"	19838	NM_000727	786	Hs.147989	NM_000727	ENSG00000108878	CACNG1	CACNLG	"calcium channel, voltage-dependent, gamma subunit 1"	protein-coding
chr3.49368445.+	chr3	49368445	49368446	+	0	NA	"intron (NM_001251877, intron 2 of 6)"	AluY|SINE|Alu	9091	NM_001251877	7375	Hs.403828	NM_001251877	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
chr16.85932397.+	chr16	85932397	85932398	+	0	NA	promoter-TSS (NM_002163)	promoter-TSS (NM_002163)	-377	NM_002163	3394	Hs.137427	NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IRF-8	interferon regulatory factor 8	protein-coding
chr11.18743330.-	chr11	18743330	18743331	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4447	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr16.54578181.+	chr16	54578181	54578182	+	0	NA	Intergenic	AluYa5|SINE|Alu	-257803	NM_024336	79191	Hs.499205	NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
chr19.20713420.+	chr19	20713420	20713421	+	0	NA	Intergenic	SVA_D|Other|Other	35206	NM_001159293	100129842	Hs.515696	NM_001159293		ZNF737	ZNF102	zinc finger protein 737	protein-coding
chr9.26387260.+	chr9	26387260	26387261	+	0	NA	Intergenic	AluY|SINE|Alu	320587	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr2.239047582.+	chr2	239047582	239047583	+	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	219	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr12.123412931.+	chr12	123412931	123412932	+	0	NA	TTS (NM_001243013)	TTS (NM_001243013)	-32219	NM_024667	79720	Hs.507162	NM_024667	ENSG00000139722	VPS37B	-	vacuolar protein sorting 37 homolog B (S. cerevisiae)	protein-coding
chr8.22594713.+	chr8	22594713	22594714	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43898	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr4.8912399.+	chr4	8912399	8912400	+	0	NA	Intergenic	Intergenic	-38856	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr5.171395317.-	chr5	171395317	171395318	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38560	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr16.88837531.+	chr16	88837531	88837532	+	0	NA	"intron (NM_001142864, intron 1 of 50)"	"intron (NM_001142864, intron 1 of 50)"	13841	NM_001142864	9780	Hs.592074	NM_001142864	ENSG00000103335	PIEZO1	FAM38A|Mib	piezo-type mechanosensitive ion channel component 1	protein-coding
chr3.51705200.+	chr3	51705200	51705201	+	0	NA	promoter-TSS (NM_001243727)	promoter-TSS (NM_001243727)	-22	NR_024012	51368	Hs.517864	NM_001129884	ENSG00000164081	TEX264	SIG11|ZSIG11	testis expressed 264	protein-coding
chr15.66993592.+	chr15	66993592	66993593	+	0	NA	Intergenic	CpG	-1082	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr21.45684274.+	chr21	45684274	45684275	+	0	NA	Intergenic	AluY|SINE|Alu	-2175	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr8.144503707.-	chr8	144503707	144503708	-	0	NA	Intergenic	CpG	-8895	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr9.140317316.-	chr9	140317316	140317317	-	0	NA	promoter-TSS (NM_006647)	promoter-TSS (NM_006647)	-398	NM_017820	54932	Hs.495553	NM_017820	ENSG00000187609	EXD3	mut-7	exonuclease 3'-5' domain containing 3	protein-coding
chr4.186131255.-	chr4	186131255	186131256	-	0	NA	promoter-TSS (NM_031953)	promoter-TSS (NM_031953)	29	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chrX.89718053.-	chrX	89718053	89718054	-	0	NA	Intergenic	AluY|SINE|Alu	-541113	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	"TGFB-induced factor homeobox 2-like, X-linked"	protein-coding
chr22.41715343.-	chr22	41715343	41715344	-	0	NA	"intron (NM_017590, intron 1 of 22)"	AluSc8|SINE|Alu	-17836	NM_017590	23264	Hs.592188	NM_017590	ENSG00000100403	ZC3H7B	RoXaN	zinc finger CCCH-type containing 7B	protein-coding
chr2.120775600.+	chr2	120775600	120775601	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4815	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr8.182483.-	chr8	182483	182484	-	0	NA	promoter-TSS (NM_001042415)	promoter-TSS (NM_001042415)	-99	NM_001042416	169270	Hs.591388	NM_001042415	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
chr7.61969534.-	chr7	61969534	61969535	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-794900	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr18.73357726.+	chr18	73357726	73357727	+	0	NA	Intergenic	L2|LINE|L2	-218137	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr17.18137229.+	chr17	18137229	18137230	+	0	NA	"exon (NM_004140, exon 5 of 23)"	"exon (NM_004140, exon 5 of 23)"	8293	NM_004140	3996	Hs.513983	NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL	lethal giant larvae homolog 1 (Drosophila)	protein-coding
chrX.132930088.-	chrX	132930088	132930089	-	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	-189585	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr2.98262611.+	chr2	98262611	98262612	+	0	NA	promoter-TSS (NM_001862)	promoter-TSS (NM_001862)	90	NM_001862	1329	Hs.1342	NM_001862		COX5B	COXVB	cytochrome c oxidase subunit Vb	protein-coding
chr6.138984632.+	chr6	138984632	138984633	+	0	NA	Intergenic	AluSp|SINE|Alu	-28173	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr11.94501420.-	chr11	94501420	94501421	-	0	NA	promoter-TSS (NM_130847)	promoter-TSS (NM_130847)	88	NM_130847	154810	Hs.503594	NM_130847	ENSG00000166025	AMOTL1	JEAP	angiomotin like 1	protein-coding
chr6.70692585.-	chr6	70692585	70692586	-	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	-116137	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr12.109855822.+	chr12	109855822	109855823	+	0	NA	"intron (NM_001101421, intron 14 of 30)"	AluY|SINE|Alu	29298	NM_001101421	283446	Hs.512008	NM_001101421	ENSG00000174527	MYO1H	-	myosin IH	protein-coding
chr14.39408458.+	chr14	39408458	39408459	+	0	NA	Intergenic	AluY|SINE|Alu	-22372	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	miscRNA
chr2.109090606.+	chr2	109090606	109090607	+	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	25029	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr17.77776971.+	chr17	77776971	77776972	+	0	NA	Intergenic	CpG-11232	-6056	NM_020649	57332	Hs.387258	NM_020649		CBX8	PC3|RC1	chromobox homolog 8	protein-coding
chr2.21484571.-	chr2	21484571	21484572	-	0	NA	Intergenic	Intergenic	217626	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr20.31565667.-	chr20	31565667	31565668	-	0	NA	Intergenic	Intergenic	-26572	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr8.3825578.+	chr8	3825578	3825579	+	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	1026750	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr19.4007636.+	chr19	4007636	4007637	+	0	NA	promoter-TSS (NM_015897)	promoter-TSS (NM_015897)	-113	NM_015897	51588	Hs.105779	NM_015897		PIAS4	PIASY|Piasg|ZMIZ6	"protein inhibitor of activated STAT, 4"	protein-coding
chr9.38829824.+	chr9	38829824	38829825	+	0	NA	Intergenic	AluY|SINE|Alu	208739	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr5.3188300.+	chr5	3188300	3188301	+	0	NA	Intergenic	CpG	347908	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr16.1115476.-	chr16	1115476	1115477	-	0	NA	"non-coding (NR_027242, exon 4 of 4)"	"non-coding (NR_027242, exon 4 of 4)"	7280	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr19.41641935.-	chr19	41641935	41641936	-	0	NA	Intergenic	CpG	-21582	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr4.117750924.-	chr4	117750924	117750925	-	0	NA	Intergenic	AluY|SINE|Alu	-255812	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr2.121617323.-	chr2	121617323	121617324	-	0	NA	"intron (NM_005270, intron 1 of 12)"	AluSc|SINE|Alu	-62456	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr2.131555311.-	chr2	131555311	131555312	-	0	NA	Intergenic	CpG	-41447	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr4.26862492.+	chr4	26862492	26862493	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	179	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr5.39649157.+	chr5	39649157	39649158	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223822	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr10.35559804.+	chr10	35559804	35559805	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23851	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr3.49479489.+	chr3	49479489	49479490	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12732	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr7.5610947.-	chr7	5610947	5610948	-	0	NA	Intergenic	AluSx1|SINE|Alu	21489	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chr3.32022182.+	chr3	32022182	32022183	+	0	NA	"intron (NM_001174060, intron 1 of 10)"	CpG	-1084	NM_001137674	344787	Hs.585139	NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
chr6.122006944.-	chr6	122006944	122006945	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-250199	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr5.172640598.+	chr5	172640598	172640599	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21717	NM_001166175	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr14.24785820.-	chr14	24785820	24785821	-	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	-3507	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr22.24237322.+	chr22	24237322	24237323	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	757	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr22.18251495.+	chr22	18251495	18251496	+	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluY|SINE|Alu	-4470	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr4.1723276.+	chr4	1723276	1723277	+	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	59	NM_006342	10460	Hs.104019	NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1	"transforming, acidic coiled-coil containing protein 3"	protein-coding
chr7.53196236.-	chr7	53196236	53196237	-	0	NA	Intergenic	AluY|SINE|Alu	-92887	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr1.54203743.+	chr1	54203743	54203744	+	0	NA	Intergenic	CpG	-3866	NM_147193	148979	Hs.306691	NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
chr9.1433507.-	chr9	1433507	1433508	-	0	NA	Intergenic	AluSc|SINE|Alu	-382887	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr9.34329774.-	chr9	34329774	34329775	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-270	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr8.86574490.+	chr8	86574490	86574491	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	252	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr19.58125595.-	chr19	58125595	58125596	-	0	NA	promoter-TSS (NM_003435)	promoter-TSS (NM_003435)	235	NM_003435	7693	Hs.469694	NM_003435		ZNF134	pHZ-15	zinc finger protein 134	protein-coding
chr5.175831757.-	chr5	175831757	175831758	-	0	NA	"intron (NM_007097, intron 2 of 5)"	"intron (NM_007097, intron 2 of 5)"	-11813	NM_001834	1212	Hs.484241	NM_001834	ENSG00000175416	CLTB	LCB	"clathrin, light chain B"	protein-coding
chr3.126207357.-	chr3	126207357	126207358	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12595	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr16.89266565.-	chr16	89266565	89266566	-	0	NA	promoter-TSS (NM_001242757)	promoter-TSS (NM_001242757)	36	NM_001242757	146429	Hs.743726	NM_001242757		SLC22A31	-	"solute carrier family 22, member 31"	protein-coding
chr22.46303185.-	chr22	46303185	46303186	-	0	NA	Intergenic	Intergenic	-69823	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr17.1133492.+	chr17	1133492	1133493	+	0	NA	Intergenic	Intergenic	-40366	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr8.107670097.+	chr8	107670097	107670098	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	61	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr3.126927452.+	chr3	126927452	126927453	+	0	NA	Intergenic	Intergenic	220015	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
chr1.78837736.-	chr1	78837736	78837737	-	0	NA	Intergenic	AluSx|SINE|Alu	118992	NM_001039585	5737	Hs.654365	NM_000959	ENSG00000122420	PTGFR	FP	prostaglandin F receptor (FP)	protein-coding
chr14.50100679.+	chr14	50100679	50100680	+	0	NA	"exon (NM_001083908, exon 1 of 2)"	"exon (NM_001083908, exon 1 of 2)"	1269	NM_018139	55172	Hs.231761	NM_001083908	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	"dynein, axonemal, assembly factor 2"	protein-coding
chr1.97029381.+	chr1	97029381	97029382	+	0	NA	Intergenic	AluSp|SINE|Alu	-157794	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr16.4835198.-	chr16	4835198	4835199	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3200	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr5.178491495.-	chr5	178491495	178491496	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3888	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr7.1147527.+	chr7	1147527	1147528	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19804	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr3.42922677.+	chr3	42922677	42922678	+	0	NA	Intergenic	CpG	-5044	NM_004391	1582	Hs.722743	NM_004391	ENSG00000180432	CYP8B1	CP8B|CYP12	"cytochrome P450, family 8, subfamily B, polypeptide 1"	protein-coding
chr19.49537363.-	chr19	49537363	49537364	-	0	NA	TTS (NM_033378)	TTS (NM_033378)	-2233	NM_033378	114336	Hs.567650	NM_033378	ENSG00000104818	CGB2	-	"chorionic gonadotropin, beta polypeptide 2"	protein-coding
chr10.133869259.+	chr10	133869259	133869260	+	0	NA	Intergenic	Intergenic	-49054	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr19.42785541.+	chr19	42785541	42785542	+	0	NA	Intergenic	CpG	-3276	NM_015125	23152	Hs.388236	NM_015125	ENSG00000079432	CIC	-	capicua transcriptional repressor	protein-coding
chr1.17338457.-	chr1	17338457	17338458	-	0	NA	promoter-TSS (NM_022089)	promoter-TSS (NM_022089)	34	NM_001141974	23400	Hs.128866	NM_001141973	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9	ATPase type 13A2	protein-coding
chrY.2934377.+	chrY	2934377	2934378	+	0	NA	"intron (NR_046502, intron 1 of 3)"	AluY|SINE|Alu	63340	NR_046502	100873962	Hs.267256	NR_046502	ENSG00000231535	LINC00278	NCRNA00278	long intergenic non-protein coding RNA 278	miscRNA
chr17.48207399.-	chr17	48207399	48207400	-	0	NA	promoter-TSS (NM_174920)	promoter-TSS (NM_174920)	153	NM_001257359	201191	Hs.567769	NM_001257359	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
chr12.70132978.+	chr12	70132978	70132979	+	0	NA	promoter-TSS (NM_175625)	promoter-TSS (NM_175625)	-202	NM_175623	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
chrX.88129144.+	chrX	88129144	88129145	+	0	NA	Intergenic	AluY|SINE|Alu	126918	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr9.139071861.-	chr9	139071861	139071862	-	0	NA	Intergenic	Intergenic	-23143	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr10.108027480.-	chr10	108027480	108027481	-	0	NA	Intergenic	LTR1D|LTR|ERV1	-896986	NM_001206570	114815	Hs.591915	NM_001013031	ENSG00000108018	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chr12.8830984.-	chr12	8830984	8830985	-	0	NA	Intergenic	AluSp|SINE|Alu	15551	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr1.53770281.+	chr1	53770281	53770282	+	0	NA	"intron (NM_033300, intron 2 of 16)"	"intron (NM_033300, intron 2 of 16)"	23540	NM_004631	7804	Hs.280387	NM_001018054		LRP8	APOER2|HSZ75190|LRP-8|MCI1	"low density lipoprotein receptor-related protein 8, apolipoprotein e receptor"	protein-coding
chr16.89160445.+	chr16	89160445	89160446	+	0	NA	"intron (NM_001127214, intron 1 of 9)"	CpG	228	NM_174917	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr17.1665123.+	chr17	1665123	1665124	+	0	NA	promoter-TSS (NM_002615)	promoter-TSS (NM_002615)	-136	NM_002615	5176	Hs.532768	NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF	"serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1"	protein-coding
chr1.183670811.+	chr1	183670811	183670812	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48363	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr20.55247419.-	chr20	55247419	55247420	-	0	NA	Intergenic	AluSz6|SINE|Alu	-43061	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
chr3.188566633.+	chr3	188566633	188566634	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323130	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr16.2126919.+	chr16	2126919	2126920	+	0	NA	"intron (NM_001077183, intron 25 of 39)"	"intron (NM_001077183, intron 25 of 39)"	13366	NR_030646	100188847		NR_030646		MIR1225	MIRN1225	microRNA 1225	miscRNA
chr19.10587520.-	chr19	10587520	10587521	-	0	NA	Intergenic	AluSq2|SINE|Alu	-23887	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr3.8721153.-	chr3	8721153	8721154	-	0	NA	Intergenic	Intergenic	27389	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr1.119549819.+	chr1	119549819	119549820	+	0	NA	Intergenic	CpG	-17640	NM_152380	6913	Hs.146196	NM_152380	ENSG00000092607	TBX15	TBX14	T-box 15	protein-coding
chr3.11817786.-	chr3	11817786	11817787	-	0	NA	Intergenic	AluY|SINE|Alu	55566	NM_014667	9686	Hs.740389	NM_001128219	ENSG00000144560	VGLL4	VGL-4	vestigial like 4 (Drosophila)	protein-coding
chr3.32863308.+	chr3	32863308	32863309	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3798	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr16.71647920.-	chr16	71647920	71647921	-	0	NA	Intergenic	AluSz|SINE|Alu	12136	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr16.70133247.+	chr16	70133247	70133248	+	0	NA	Intergenic	AluY|SINE|Alu	-14282	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr17.76174946.-	chr17	76174946	76174947	-	0	NA	"intron (NM_003258, intron 4 of 6)"	"intron (NM_003258, intron 4 of 6)"	-8339	NM_003258	7083	Hs.515122	NM_003258	ENSG00000167900	TK1	TK2	"thymidine kinase 1, soluble"	protein-coding
chr19.44174535.+	chr19	44174535	44174536	+	0	NA	promoter-TSS (NM_002659)	promoter-TSS (NM_002659)	-37	NM_002659	5329	Hs.466871	NM_001005376	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	"plasminogen activator, urokinase receptor"	protein-coding
chr22.20204054.+	chr22	20204054	20204055	+	0	NA	Intergenic	AluSx1|SINE|Alu	10199	NR_026919	150197	Hs.635544	NM_152508		LOC150197	-	uncharacterized LOC150197	miscRNA
chr2.136760869.-	chr2	136760869	136760870	-	0	NA	Intergenic	AluSq2|SINE|Alu	17647	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr8.14882311.-	chr8	14882311	14882312	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171292	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr12.49856919.-	chr12	49856919	49856920	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73962	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr17.4976256.+	chr17	4976256	4976257	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5498	NM_153018	124961	Hs.48832	NM_153018	ENSG00000180787	ZFP3	ZNF752	ZFP3 zinc finger protein	protein-coding
chrX.15337010.-	chrX	15337010	15337011	-	0	NA	TTS (NM_002641)	TTS (NM_002641)	3264	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr1.110881131.+	chr1	110881131	110881132	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	662	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr17.18179049.+	chr17	18179049	18179050	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14625	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr16.1845105.-	chr16	1845105	1845106	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	196	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr7.95178756.-	chr7	95178756	95178757	-	0	NA	Intergenic	AluY|SINE|Alu	-47169	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr8.23157509.-	chr8	23157509	23157510	-	0	NA	"intron (NM_002318, intron 12 of 13)"	"intron (NM_002318, intron 12 of 13)"	-11897	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr16.8967986.+	chr16	8967986	8967987	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5123	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr20.46413395.-	chr20	46413395	46413396	-	0	NA	"intron (NM_198596, intron 1 of 20)"	L2b|LINE|L2	-1413	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr3.11221113.+	chr3	11221113	11221114	+	0	NA	"intron (NM_001098212, intron 1 of 1)"	AluY|SINE|Alu	24899	NM_001098212	3269	Hs.1570	NM_000861	ENSG00000196639	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
chr6.46742403.+	chr6	46742403	46742404	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18691	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr17.74894610.-	chr17	74894610	74894611	-	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	-25881	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr1.153214237.-	chr1	153214237	153214238	-	0	NA	Intergenic	AluY|SINE|Alu	17942	NM_000427	4014	Hs.251680	NM_000427	ENSG00000203782	LOR	-	loricrin	protein-coding
chr17.4708647.-	chr17	4708647	4708648	-	0	NA	Intergenic	AluSp|SINE|Alu	1749	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr7.54614234.+	chr7	54614234	54614235	+	0	NA	"intron (NM_182546, intron 2 of 4)"	CpG	4215	NM_182546	222008	Hs.731937	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
chr5.45596292.+	chr5	45596292	45596293	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99928	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr3.184079584.-	chr3	184079584	184079585	-	0	NA	promoter-TSS (NM_004366)	promoter-TSS (NM_004366)	145	NM_001171087	1181	Hs.436847	NM_001171087	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|clC-2	"chloride channel, voltage-sensitive 2"	protein-coding
chr16.78269424.+	chr16	78269424	78269425	+	0	NA	"intron (NM_016373, intron 5 of 8)"	"intron (NM_016373, intron 5 of 8)"	136097	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr7.100963612.+	chr7	100963612	100963613	+	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	1481	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr17.12456654.-	chr17	12456654	12456655	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3369	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr6.88932877.+	chr6	88932877	88932878	+	0	NA	Intergenic	AluY|SINE|Alu	-57110	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chr22.50959105.+	chr22	50959105	50959106	+	0	NA	TTS (NM_014551)	TTS (NM_014551)	4928	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr12.92086158.+	chr12	92086158	92086159	+	0	NA	Intergenic	AluSx3|SINE|Alu	449331	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr8.43413775.-	chr8	43413775	43413776	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266190	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr2.99878849.-	chr2	99878849	99878850	-	0	NA	Intergenic	AluY|SINE|Alu	7279	NM_175735	254773	Hs.436468	NM_175735	ENSG00000185674	LYG2	LYGH	lysozyme G-like 2	protein-coding
chr11.64073482.-	chr11	64073482	64073483	-	0	NA	"intron (NM_004451, intron 1 of 6)"	CpG	-438	NM_004451	2101	Hs.110849	NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen-related receptor alpha	protein-coding
chr9.65569708.-	chr9	65569708	65569709	-	0	NA	Intergenic	AluY|SINE|Alu	60098	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	"SPATA31 subfamily A, member 5"	protein-coding
chr17.78559343.+	chr17	78559343	78559344	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40718	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr20.61885491.-	chr20	61885491	61885492	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-161	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr7.1542268.+	chr7	1542268	1542269	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1750	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chrY.59004222.-	chrY	59004222	59004223	-	0	NA	Intergenic	AluSq2|SINE|Alu	96235	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
chr12.12424681.+	chr12	12424681	12424682	+	0	NA	Intergenic	AluY|SINE|Alu	-4870	NM_002336	4040	Hs.658913	NM_002336	ENSG00000070018	LRP6	ADCAD2	low density lipoprotein receptor-related protein 6	protein-coding
chr12.34501253.+	chr12	34501253	34501254	+	0	NA	Intergenic	GSATII|Satellite|centr	326037	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.18180452.+	chr19	18180452	18180453	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17245	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr9.6559782.+	chr9	6559782	6559783	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85910	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr8.27695126.+	chr8	27695126	27695127	+	0	NA	"intron (NM_018492, intron 1 of 7)"	CpG	223	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr6.111924222.+	chr6	111924222	111924223	+	0	NA	TTS (NR_034109)	TTS (NR_034109)	3255	NR_028338	10758	Hs.740602	NM_001164281	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
chr21.47745184.+	chr21	47745184	47745185	+	0	NA	"intron (NM_006031, intron 1 of 46)"	CpG	1148	NM_006031	5116	Hs.474069	NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
chr5.178657975.+	chr5	178657975	178657976	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114456	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr1.246995894.+	chr1	246995894	246995895	+	0	NA	Intergenic	AluSx1|SINE|Alu	42975	NR_015422	149134	Hs.720494	NM_207326		LOC149134	-	uncharacterized LOC149134	miscRNA
chr17.22012671.-	chr17	22012671	22012672	-	0	NA	Intergenic	Intergenic	9766	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr8.112843671.-	chr8	112843671	112843672	-	0	NA	Intergenic	AluY|SINE|Alu	812051	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	miscRNA
chr15.66124402.-	chr15	66124402	66124403	-	0	NA	Intergenic	AluY|SINE|Alu	37395	NM_001206836	8766	Hs.321541	NM_001206836	ENSG00000103769	RAB11A	YL8	"RAB11A, member RAS oncogene family"	protein-coding
chr9.90472349.-	chr9	90472349	90472350	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1622	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chrX.18849764.+	chrX	18849764	18849765	+	0	NA	Intergenic	AluY|SINE|Alu	-58650	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr13.50222307.+	chr13	50222307	50222308	+	0	NA	Intergenic	AluY|SINE|Alu	19872	NM_138450	115761	Hs.558599	NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
chr6.43070138.-	chr6	43070138	43070139	-	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	-25586	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr15.66998972.-	chr15	66998972	66998973	-	0	NA	"intron (NM_005585, intron 1 of 3)"	"intron (NM_005585, intron 1 of 3)"	1958	NM_001142861	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr8.65711146.+	chr8	65711146	65711147	+	0	NA	"5' UTR (NM_004820, exon 1 of 6)"	"5' UTR (NM_004820, exon 1 of 6)"	202	NM_004820	9420	Hs.667720	NM_004820	ENSG00000172817	CYP7B1	CBAS3|CP7B|SPG5A	"cytochrome P450, family 7, subfamily B, polypeptide 1"	protein-coding
chr6.168209509.-	chr6	168209509	168209510	-	0	NA	Intergenic	AluSq|SINE|Alu	11970	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr6.15189310.-	chr6	15189310	15189311	-	0	NA	Intergenic	SVA_F|Other|Other	56896	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chrM.792.-	chrM	792	793	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.40316833.+	chr17	40316833	40316834	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9771	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr19.52640519.-	chr19	52640519	52640520	-	0	NA	"intron (NM_178523, intron 1 of 3)"	AluY|SINE|Alu	-2672	NM_178523	90317	Hs.731969	NM_178523		ZNF616	-	zinc finger protein 616	protein-coding
chr8.101661660.+	chr8	101661660	101661661	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	233	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr18.2377813.+	chr18	2377813	2377814	+	0	NA	Intergenic	AluSg7|SINE|Alu	193676	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr15.52260149.-	chr15	52260149	52260150	-	0	NA	"intron (NM_138792, intron 1 of 11)"	AluSx|SINE|Alu	-3809	NM_138792	123169	Hs.567662	NM_138792	ENSG00000166477	LEO1	RDL	"Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)"	protein-coding
chr22.31744364.-	chr22	31744364	31744365	-	0	NA	Intergenic	AluSp|SINE|Alu	2115	NM_014323	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr18.54318534.+	chr18	54318534	54318535	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-82	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr1.101786836.-	chr1	101786836	101786837	-	0	NA	Intergenic	AluY|SINE|Alu	-19615	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr19.23432248.+	chr19	23432248	23432249	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	924	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr8.22308542.-	chr8	22308542	22308543	-	0	NA	"intron (NM_001243975, intron 1 of 12)"	AluY|SINE|Alu	-10059	NM_001243974	5533	Hs.731683	NM_001243974	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	"protein phosphatase 3, catalytic subunit, gamma isozyme"	protein-coding
chr22.28175281.-	chr22	28175281	28175282	-	0	NA	"intron (NM_002430, intron 1 of 1)"	"intron (NM_002430, intron 1 of 1)"	-22205	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
chr5.1137810.-	chr5	1137810	1137811	-	0	NA	Intergenic	Intergenic	25638	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr11.120428548.+	chr11	120428548	120428549	+	0	NA	Intergenic	AluY|SINE|Alu	-102480	NM_014619	2900	Hs.568901	NM_014619		GRIK4	EAA1|GRIK|GluK4|KA1	"glutamate receptor, ionotropic, kainate 4"	protein-coding
chr14.72398991.+	chr14	72398991	72398992	+	0	NA	promoter-TSS (NM_001204420)	promoter-TSS (NM_001204420)	-165	NM_001204424	9628	Hs.509872	NM_001204416	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
chrX.46794138.-	chrX	46794138	46794139	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22270	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr12.106533453.+	chr12	106533453	106533454	+	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	358	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr15.76627335.+	chr15	76627335	76627336	+	0	NA	Intergenic	AluSg|SINE|Alu	-1812	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr12.121338263.-	chr12	121338263	121338264	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	-3892	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr7.62940022.-	chr7	62940022	62940023	-	0	NA	Intergenic	AluYf4|SINE|Alu	80603	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr14.80915478.+	chr14	80915478	80915479	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-218081	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr12.130442051.+	chr12	130442051	130442052	+	0	NA	Intergenic	Intergenic	-53839	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr11.74994590.-	chr11	74994590	74994591	-	0	NA	"intron (NM_020251, intron 4 of 14)"	"intron (NM_020251, intron 4 of 14)"	-42640	NM_001195528	100507050	Hs.744257	NM_001195528		TPBGL	-	trophoblast glycoprotein-like	protein-coding
chr2.10262480.-	chr2	10262480	10262481	-	0	NA	promoter-TSS (NM_001165931)	promoter-TSS (NM_001165931)	215	NM_001165931	6241	Hs.226390	NM_001034	ENSG00000171848	RRM2	R2|RR2|RR2M	ribonucleotide reductase M2	protein-coding
chr12.132116837.-	chr12	132116837	132116838	-	0	NA	Intergenic	L1ME1|LINE|L1	78795	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr2.100200694.-	chr2	100200694	100200695	-	0	NA	"intron (NM_002285, intron 15 of 23)"	AluSz|SINE|Alu	94214	NM_001037872	51455	Hs.443077	NM_001037872	ENSG00000135945	REV1	REV1L	"REV1, polymerase (DNA directed)"	protein-coding
chr5.139973676.-	chr5	139973676	139973677	-	0	NA	Intergenic	Intergenic	-29256	NM_080670	113829	Hs.406840	NM_080670	ENSG00000176087	SLC35A4	-	"solute carrier family 35, member A4"	protein-coding
chr10.118500967.+	chr10	118500967	118500968	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1118	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr8.94845591.-	chr8	94845591	94845592	-	0	NA	Intergenic	SVA_A|Other|Other	-78519	NM_001142301	91147	Hs.116240	NM_001142301	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
chr8.100115799.+	chr8	100115799	100115800	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90305	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr11.70963436.+	chr11	70963436	70963437	+	0	NA	Intergenic	CpG	-27628	NM_012309	22941	Hs.268726	NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
chr7.148581404.-	chr7	148581404	148581405	-	0	NA	promoter-TSS (NM_152998)	promoter-TSS (NM_152998)	-37	NM_004456	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr10.135008695.+	chr10	135008695	135008696	+	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	34724	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr16.340964.-	chr16	340964	340965	-	0	NA	"intron (NM_181050, intron 8 of 9)"	"intron (NM_181050, intron 8 of 9)"	-7846	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr22.44845324.-	chr22	44845324	44845325	-	0	NA	Intergenic	Intergenic	-48681	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr16.723813.+	chr16	723813	723814	+	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	-2262	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr8.123636934.+	chr8	123636934	123636935	+	0	NA	Intergenic	AluSx|SINE|Alu	-156967	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr7.53586992.+	chr7	53586992	53586993	+	0	NA	Intergenic	AluY|SINE|Alu	292632	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr12.133328263.-	chr12	133328263	133328264	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10188	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr2.125181301.-	chr2	125181301	125181302	-	0	NA	"intron (NM_130773, intron 4 of 23)"	AluY|SINE|Alu	-398437	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr12.131704401.+	chr12	131704401	131704402	+	0	NA	Intergenic	Intergenic	54845	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr3.32863275.+	chr3	32863275	32863276	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3765	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr7.5703149.+	chr7	5703149	5703150	+	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	16943	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr19.2194657.-	chr19	2194657	2194658	-	0	NA	"intron (NM_032482, intron 7 of 27)"	"intron (NM_032482, intron 7 of 27)"	-30509	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr3.170096466.-	chr3	170096466	170096467	-	0	NA	"intron (NM_001145097, intron 1 of 5)"	AluSx1|SINE|Alu	-19055	NM_001248008	6498	Hs.581632	NM_001145097	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like oncogene	protein-coding
chr16.70356409.-	chr16	70356409	70356410	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23347	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr5.3188299.+	chr5	3188299	3188300	+	0	NA	Intergenic	CpG	347909	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr6.12041581.-	chr6	12041581	12041582	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28857	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr16.85699728.-	chr16	85699728	85699729	-	0	NA	"exon (NM_001134473, exon 12 of 15)"	"exon (NM_001134473, exon 12 of 15)"	-22860	NM_016095	51659	Hs.433180	NM_016095		GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding
chr17.8061016.+	chr17	8061016	8061017	+	0	NA	Intergenic	AluY|SINE|Alu	-5263	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr7.69745563.-	chr7	69745563	69745564	-	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	-681657	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr14.85254351.+	chr14	85254351	85254352	+	0	NA	Intergenic	AluSx1|SINE|Alu	-742137	NM_013231	23768	Hs.744139	NM_013231	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chr1.227982844.+	chr1	227982844	227982845	+	0	NA	Intergenic	Intergenic	-20574	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr2.239058219.+	chr2	239058219	239058220	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10856	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr7.124765635.+	chr7	124765635	124765636	+	0	NA	Intergenic	L1PA7|LINE|L1	-195598	NR_003103	25913	Hs.31968	NM_001042594	ENSG00000128513	POT1	HPOT1	protection of telomeres 1	protein-coding
chr8.107613679.+	chr8	107613679	107613680	+	0	NA	"intron (NM_018002, intron 3 of 15)"	MLT1A|LTR|ERVL-MaLR	-56357	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr11.67351051.+	chr11	67351051	67351052	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-15	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr2.207036834.-	chr2	207036834	207036835	-	0	NA	Intergenic	SVA_D|Other|Other	-9882	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr14.23517060.-	chr14	23517060	23517061	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5684	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr7.13141811.-	chr7	13141811	13141812	-	0	NA	Intergenic	SVA_D|Other|Other	-414900	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chrX.137770415.+	chrX	137770415	137770416	+	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	-20461	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr1.217697515.-	chr1	217697515	217697516	-	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	-106894	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr15.63892534.+	chr15	63892534	63892535	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	492	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr22.46326797.+	chr22	46326797	46326798	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46211	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr10.129195997.+	chr10	129195997	129195998	+	0	NA	"intron (NM_001380, intron 38 of 51)"	"intron (NM_001380, intron 38 of 51)"	-151616	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
chr17.35266242.-	chr17	35266242	35266243	-	0	NA	Intergenic	AluSx3|SINE|Alu	28530	NM_005568	3975	Hs.443727	NM_005568	ENSG00000132130	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
chr2.47661300.-	chr2	47661300	47661301	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31094	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr11.69189634.-	chr11	69189634	69189635	-	0	NA	Intergenic	Intergenic	-128012	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr17.4453817.+	chr17	4453817	4453818	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4864	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr19.22889671.-	chr19	22889671	22889672	-	0	NA	Intergenic	AluSg|SINE|Alu	-72545	NM_020855	57615	Hs.232108	NM_020855	ENSG00000229676	ZNF492	ZNF115	zinc finger protein 492	protein-coding
chr10.7626537.+	chr10	7626537	7626538	+	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	35099	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr5.179795675.+	chr5	179795675	179795676	+	0	NA	Intergenic	AluY|SINE|Alu	-15360	NM_005110	9945	Hs.696497	NM_005110	ENSG00000131459	GFPT2	GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
chr6.126111931.-	chr6	126111931	126111932	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-22	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr8.86574387.+	chr8	86574387	86574388	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	355	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr8.48953729.-	chr8	48953729	48953730	-	0	NA	"intron (NM_003350, intron 1 of 3)"	AluSz6|SINE|Alu	-32734	NM_003350	7336	Hs.491695	NM_003350		UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding
chr1.149646773.-	chr1	149646773	149646774	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70320	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr11.45810288.+	chr11	45810288	45810289	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15335	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr7.66064154.+	chr7	66064154	66064155	+	0	NA	Intergenic	AluY|SINE|Alu	-20656	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr20.43160564.-	chr20	43160564	43160565	-	0	NA	"5' UTR (NM_181805, exon 1 of 6)"	"5' UTR (NM_181805, exon 1 of 6)"	-128	NM_181804	11142	Hs.472831	NM_007066	ENSG00000168734	PKIG	-	"protein kinase (cAMP-dependent, catalytic) inhibitor gamma"	protein-coding
chr17.42869186.+	chr17	42869186	42869187	+	0	NA	Intergenic	AluY|SINE|Alu	32618	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chrX.53123339.-	chrX	53123339	53123340	-	0	NA	Intergenic	CpG	-11797	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.178491468.-	chr5	178491468	178491469	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3861	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr16.49498954.-	chr16	49498954	49498955	-	0	NA	Intergenic	CpG	-91146	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr19.4065771.-	chr19	4065771	4065772	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1045	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr22.18293080.-	chr22	18293080	18293081	-	0	NA	"intron (NM_015241, intron 28 of 31)"	AluY|SINE|Alu	35649	NM_001244567	637	Hs.591054	NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
chr17.18575712.-	chr17	18575712	18575713	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-782	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr6.43016774.-	chr6	43016774	43016775	-	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	-4909	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr7.1798931.+	chr7	1798931	1798932	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50133	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr7.157234735.+	chr7	157234735	157234736	+	0	NA	Intergenic	CpG	105024	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr13.50297729.-	chr13	50297729	50297730	-	0	NA	"intron (NM_002267, intron 7 of 16)"	AluSc|SINE|Alu	32106	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr3.185305641.+	chr3	185305641	185305642	+	0	NA	"intron (NM_021627, intron 1 of 16)"	AluSg4|SINE|Alu	1610	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
chr10.24476776.+	chr10	24476776	24476777	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20944	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr19.58236054.+	chr19	58236054	58236055	+	0	NA	"intron (NM_024833, intron 1 of 3)"	AluY|SINE|Alu	2941	NM_024833	79891	Hs.180402	NM_024833	ENSG00000083814	ZNF671	-	zinc finger protein 671	protein-coding
chr3.138682027.+	chr3	138682027	138682028	+	0	NA	Intergenic	Intergenic	15951	NM_001040061	401089	Hs.591303	NM_001040061	ENSG00000206262	C3orf72	-	chromosome 3 open reading frame 72	protein-coding
chr5.1137792.-	chr5	1137792	1137793	-	0	NA	Intergenic	Intergenic	25620	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr12.112426263.-	chr12	112426263	112426264	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24760	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr7.53196231.-	chr7	53196231	53196232	-	0	NA	Intergenic	AluY|SINE|Alu	-92882	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr11.68671210.-	chr11	68671210	68671211	-	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	-93	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr2.45236748.+	chr2	45236748	45236749	+	0	NA	promoter-TSS (NM_016932)	promoter-TSS (NM_016932)	-206	NM_016932	10736	Hs.101937	NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
chr2.158052730.+	chr2	158052730	158052731	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61610	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr11.31337026.-	chr11	31337026	31337027	-	0	NA	"intron (NM_181807, intron 3 of 8)"	AluY|SINE|Alu	-54331	NM_181807	341019	Hs.592000	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
chr7.1798895.-	chr7	1798895	1798896	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50097	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr4.83939793.-	chr4	83939793	83939794	-	0	NA	Intergenic	AluSq2|SINE|Alu	5753	NM_001115007	132660	Hs.96952	NM_001115007	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120	lin-54 homolog (C. elegans)	protein-coding
chr6.33500280.+	chr6	33500280	33500281	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47790	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr6.33811382.+	chr6	33811382	33811383	+	0	NA	Intergenic	Intergenic	-39589	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr4.5892162.-	chr4	5892162	5892163	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1847	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr6.142795184.+	chr6	142795184	142795185	+	0	NA	Intergenic	AluSc|SINE|Alu	163789	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	miscRNA
chr8.22594720.-	chr8	22594720	22594721	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43905	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr22.38166161.-	chr22	38166161	38166162	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	-23920	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr10.13341652.+	chr10	13341652	13341653	+	0	NA	promoter-TSS (NM_001037537)	promoter-TSS (NM_001037537)	94	NM_001037537	5264	Hs.498732	NM_001037537	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
chr16.2161312.-	chr16	2161312	2161313	-	0	NA	"exon (NM_000296, exon 15 of 46)"	"exon (NM_000296, exon 15 of 46)"	21027	NR_030646	100188847		NR_030646		MIR1225	MIRN1225	microRNA 1225	miscRNA
chr2.74211847.-	chr2	74211847	74211848	-	0	NA	Intergenic	CpG	-57894	NM_080918	1716	Hs.469022	NM_080916	ENSG00000114956	DGUOK	MTDPS3|dGK	deoxyguanosine kinase	protein-coding
chr8.55917247.-	chr8	55917247	55917248	-	0	NA	Intergenic	AluY|SINE|Alu	97770	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr3.47744619.+	chr3	47744619	47744620	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78786	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr17.7198728.+	chr17	7198728	7198729	+	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	-852	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr7.158670980.-	chr7	158670980	158670981	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21711	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr7.139162663.-	chr7	139162663	139162664	-	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	-5794	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr13.50138587.-	chr13	50138587	50138588	-	0	NA	"intron (NM_018191, intron 4 of 12)"	AluSx4|SINE|Alu	-21132	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr17.45349554.+	chr17	45349554	45349555	+	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	18346	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chr2.241363410.-	chr2	241363410	241363411	-	0	NA	Intergenic	Intergenic	11705	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr5.14460444.-	chr5	14460444	14460445	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121447	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr5.124198979.+	chr5	124198979	124198980	+	0	NA	Intergenic	AluY|SINE|Alu	-118174	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
chr6.160985677.-	chr6	160985677	160985678	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53521	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr3.95669697.-	chr3	95669697	95669698	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	267660	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr17.78977913.+	chr17	78977913	78977914	+	0	NA	Intergenic	CpG	12272	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr17.65487399.+	chr17	65487399	65487400	+	0	NA	"intron (NM_012417, intron 1 of 8)"	"intron (NM_012417, intron 1 of 8)"	114002	NM_012417	26207	Hs.591185	NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	"phosphatidylinositol transfer protein, cytoplasmic 1"	protein-coding
chr3.122695650.-	chr3	122695650	122695651	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	669	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr2.232202259.-	chr2	232202259	232202260	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25160	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr20.4729617.-	chr20	4729617	4729618	-	0	NA	Intergenic	Intergenic	8303	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr4.57633160.-	chr4	57633160	57633161	-	0	NA	Intergenic	AluSc8|SINE|Alu	-54479	NR_073417	6691	Hs.98243	NM_001271718	ENSG00000128040	SPINK2	HUSI-II	"serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)"	protein-coding
chr19.57585358.+	chr19	57585358	57585359	+	0	NA	Intergenic	AluSx1|SINE|Alu	-46151	NM_020903	57663	Hs.515632	NM_020903	ENSG00000131864	USP29	HOM-TES-84/86	ubiquitin specific peptidase 29	protein-coding
chr7.3456556.+	chr7	3456556	3456557	+	0	NA	"intron (NM_152744, intron 1 of 44)"	AluSq|SINE|Alu	115476	NM_152744	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr5.141451801.+	chr5	141451801	141451802	+	0	NA	Intergenic	AluSq|SINE|Alu	-36523	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr3.1900251.-	chr3	1900251	1900252	-	0	NA	Intergenic	AluSp|SINE|Alu	240299	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr4.166248529.+	chr4	166248529	166248530	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-289	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr12.58059373.-	chr12	58059373	58059374	-	0	NA	Intergenic	SVA_A|Other|Other	28365	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chr15.29132964.-	chr15	29132964	29132965	-	0	NA	Intergenic	Intergenic	39143	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr9.116102478.-	chr9	116102478	116102479	-	0	NA	"intron (NM_145241, intron 1 of 10)"	CpG	-142	NM_145241	114987	Hs.133331	NM_001012361	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
chr19.36744777.-	chr19	36744777	36744778	-	0	NA	Intergenic	AluY|SINE|Alu	38791	NM_001042474	147929	Hs.596338	NM_001042474	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
chr8.144512832.-	chr8	144512832	144512833	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	230	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr6.168219497.+	chr6	168219497	168219498	+	0	NA	Intergenic	AluSp|SINE|Alu	7979	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr9.12352801.+	chr9	12352801	12352802	+	0	NA	Intergenic	AluY|SINE|Alu	-340585	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr7.1577172.+	chr7	1577172	1577173	+	0	NA	"intron (NM_002360, intron 1 of 2)"	"intron (NM_002360, intron 1 of 2)"	6804	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr1.167653971.+	chr1	167653971	167653972	+	0	NA	"intron (NM_052862, intron 2 of 6)"	AluSp|SINE|Alu	-37216	NM_024569	9019	Hs.493919	NM_001146191	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
chr7.1575455.+	chr7	1575455	1575456	+	0	NA	"intron (NM_002360, intron 1 of 2)"	"intron (NM_002360, intron 1 of 2)"	5087	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	protein-coding
chr21.43198239.+	chr21	43198239	43198240	+	0	NA	Intergenic	Intergenic	-10990	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr20.17896822.+	chr20	17896822	17896823	+	0	NA	Intergenic	AluSz6|SINE|Alu	46767	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	"small nucleolar RNA, C/D box 17"	snoRNA
chr3.196618963.-	chr3	196618963	196618964	-	0	NA	"intron (NM_152699, intron 2 of 9)"	AluJb|SINE|Alu	-24236	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr20.61885502.+	chr20	61885502	61885503	+	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	172	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr5.178157726.+	chr5	178157726	178157727	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-23	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr7.4429930.+	chr7	4429930	4429931	+	0	NA	Intergenic	SVA_D|Other|Other	260613	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr18.11751682.-	chr18	11751682	11751683	-	0	NA	"5' UTR (NM_001142339, exon 1 of 13)"	"5' UTR (NM_001142339, exon 1 of 13)"	-211	NM_001142339	2774	Hs.741448	NM_002071	ENSG00000141404	GNAL	-	"guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type"	protein-coding
chr1.17034269.+	chr1	17034269	17034270	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12383	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr12.38493596.+	chr12	38493596	38493597	+	0	NA	Intergenic	Intergenic	-216961	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr14.34924162.+	chr14	34924162	34924163	+	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	7306	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr17.37768957.+	chr17	37768957	37768958	+	0	NA	Intergenic	Intergenic	-4782	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr19.56486025.-	chr19	56486025	56486026	-	0	NA	"intron (NM_176811, intron 7 of 9)"	AluYc|SINE|Alu	25067	NM_153447	126206	Hs.356872	NM_153447	ENSG00000171487	NLRP5	CLR19.8|MATER|NALP5|PAN11|PYPAF8	"NLR family, pyrin domain containing 5"	protein-coding
chr2.91874411.+	chr2	91874411	91874412	+	0	NA	Intergenic	CpG	-26436	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr7.2916577.+	chr7	2916577	2916578	+	0	NA	Intergenic	Intergenic	-32618	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr6.169424541.+	chr6	169424541	169424542	+	0	NA	Intergenic	CpG	229596	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr10.95605024.-	chr10	95605024	95605025	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48706	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr11.1949925.+	chr11	1949925	1949926	+	0	NA	"intron (NM_001042780, intron 6 of 14)"	"intron (NM_001042780, intron 6 of 14)"	9126	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr1.153574103.-	chr1	153574103	153574104	-	0	NA	Intergenic	AluY|SINE|Alu	-11411	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr2.48784474.-	chr2	48784474	48784475	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11685	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chrX.46794147.+	chrX	46794147	46794148	+	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	22279	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr8.56013795.+	chr8	56013795	56013796	+	0	NA	Intergenic	CpG	-1222	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr4.38203592.+	chr4	38203592	38203593	+	0	NA	Intergenic	AluSg|SINE|Alu	82017	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr19.4065719.-	chr19	4065719	4065720	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1097	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr1.148928226.-	chr1	148928226	148928227	-	0	NA	promoter-TSS (NR_027355)	promoter-TSS (NR_027355)	60	NR_027356	645166	Hs.744183	NR_027355	ENSG00000232527	LOC645166	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr9.140127288.-	chr9	140127288	140127289	-	0	NA	"exon (NM_001177317, exon 5 of 13)"	"exon (NM_001177317, exon 5 of 13)"	-1903	NM_080877	142680	Hs.432442	NM_001177316	ENSG00000198569	SLC34A3	HHRH|NPTIIc	"solute carrier family 34 (sodium phosphate), member 3"	protein-coding
chr9.43582529.+	chr9	43582529	43582530	+	0	NA	Intergenic	AluY|SINE|Alu	48201	NM_001145196	389730	Hs.455299	NM_001145196	ENSG00000185775	SPATA31A6	FAM75A6	"SPATA31 subfamily A, member 6"	protein-coding
chr10.134034410.+	chr10	134034410	134034411	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	33996	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr3.45348412.+	chr3	45348412	45348413	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80598	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr15.91370851.-	chr15	91370851	91370852	-	0	NA	Intergenic	AluSz|SINE|Alu	41034	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chrX.112142830.+	chrX	112142830	112142831	+	0	NA	Intergenic	AluY|SINE|Alu	-58787	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr3.34527463.+	chr3	34527463	34527464	+	0	NA	Intergenic	AluSz6|SINE|Alu	687400	NM_001162429	10015	Hs.475896	NM_001162429	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
chr10.133937821.-	chr10	133937821	133937822	-	0	NA	"intron (NM_001105521, intron 2 of 23)"	CpG	-19508	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr19.18378250.+	chr19	18378250	18378251	+	0	NA	"exon (NM_025249, exon 3 of 4)"	"exon (NM_025249, exon 3 of 4)"	7069	NM_025249	80726	Hs.732366	NM_001145304	ENSG00000130518	KIAA1683	-	KIAA1683	protein-coding
chr7.95234908.+	chr7	95234908	95234909	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8983	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr3.82554666.-	chr3	82554666	82554667	-	0	NA	Intergenic	MER52A|LTR|ERV1	743716	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr10.6094826.-	chr10	6094826	6094827	-	0	NA	"intron (NM_000417, intron 1 of 7)"	"intron (NM_000417, intron 1 of 7)"	-9507	NM_000417	3559	Hs.231367	NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|TCGFR	"interleukin 2 receptor, alpha"	protein-coding
chr7.140400220.+	chr7	140400220	140400221	+	0	NA	"intron (NM_004546, intron 1 of 3)"	AluSp|SINE|Alu	-3343	NR_024454	100134713	Hs.743663	NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	miscRNA
chr5.28928030.+	chr5	28928030	28928031	+	0	NA	TTS (NR_033961)	TTS (NR_033961)	1053	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr6.167607742.-	chr6	167607742	167607743	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23661	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr21.47838763.-	chr21	47838763	47838764	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40099	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chrX.42145035.+	chrX	42145035	42145036	+	0	NA	Intergenic	SVA_D|Other|Other	-362748	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr16.84212677.+	chr16	84212677	84212678	+	0	NA	"exon (NM_005679, exon 14 of 14)"	"exon (NM_005679, exon 14 of 14)"	7999	NM_139353	9013	Hs.153022	NM_001243156	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa"	protein-coding
chr17.8342612.-	chr17	8342612	8342613	-	0	NA	"intron (NM_001025579, intron 1 of 9)"	AluSx1|SINE|Alu	-3442	NM_030808	81565	Hs.740680	NM_001025579	ENSG00000166579	NDEL1	EOPA|MITAP1|NUDEL	nudE nuclear distribution E homolog (A. nidulans)-like 1	protein-coding
chr14.19614784.-	chr14	19614784	19614785	-	0	NA	Intergenic	CpG	-61419	NM_001005356	404785	Hs.711826	NM_001005357	ENSG00000222036	POTEG	A26C2|ACTBL1|CT104.4|POTE-14|POTE14|POTE14alpha|POTE22	"POTE ankyrin domain family, member G"	protein-coding
chr8.104645104.+	chr8	104645104	104645105	+	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	132128	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr19.6653653.-	chr19	6653653	6653654	-	0	NA	Intergenic	AluY|SINE|Alu	-16946	NM_003807	8740	Hs.129708	NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg|TR2	"tumor necrosis factor (ligand) superfamily, member 14"	protein-coding
chr4.174023267.-	chr4	174023267	174023268	-	0	NA	Intergenic	Harlequin-int|LTR|ERV1	66637	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	protein-coding
chr22.49546146.+	chr22	49546146	49546147	+	0	NA	Intergenic	Intergenic	283564	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr17.79347577.+	chr17	79347577	79347578	+	0	NA	Intergenic	Intergenic	11583	NM_001272086	100130370	Hs.651390	XM_001714096		LOC100130370	-	uncharacterized LOC100130370	protein-coding
chr5.14460424.-	chr5	14460424	14460425	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121467	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr16.431717.-	chr16	431717	431718	-	0	NA	promoter-TSS (NR_024453)	promoter-TSS (NR_024453)	-233	NM_021259	58986	Hs.288940	NM_021259	ENSG00000129925	TMEM8A	M83|TMEM6|TMEM8	transmembrane protein 8A	protein-coding
chr9.425350.-	chr9	425350	425351	-	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	44944	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr16.86600791.-	chr16	86600791	86600792	-	0	NA	promoter-TSS (NM_005251)	promoter-TSS (NM_005251)	66	NM_005251	2303	Hs.740701	NM_005251	ENSG00000176692	FOXC2	FKHL14|LD|MFH-1|MFH1	"forkhead box C2 (MFH-1, mesenchyme forkhead 1)"	protein-coding
chr16.88772917.-	chr16	88772917	88772918	-	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	-26	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chr16.16013164.-	chr16	16013164	16013165	-	0	NA	Intergenic	AluY|SINE|Alu	30270	NM_004996	4363	Hs.391464	NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	"ATP-binding cassette, sub-family C (CFTR/MRP), member 1"	protein-coding
chr12.110821745.-	chr12	110821745	110821746	-	0	NA	"intron (NM_016238, intron 6 of 10)"	AluSg4|SINE|Alu	-19790	NM_001137664	51434	Hs.719935	NM_001137664	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
chr2.73402656.+	chr2	73402656	73402657	+	0	NA	Intergenic	CpG	-26730	NM_001134462	344022	Hs.694384	NM_001134462		NOTO	-	notochord homeobox	protein-coding
chr11.347151.-	chr11	347151	347152	-	0	NA	Intergenic	AluY|SINE|Alu	22644	NM_178537	338707	Hs.148074	NM_178537	ENSG00000182272	B4GALNT4	-	"beta-1,4-N-acetyl-galactosaminyl transferase 4"	protein-coding
chr12.8830987.-	chr12	8830987	8830988	-	0	NA	Intergenic	AluSp|SINE|Alu	15554	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr11.17160892.+	chr11	17160892	17160893	+	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	30462	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr14.80915482.+	chr14	80915482	80915483	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-218085	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr2.97247917.+	chr2	97247917	97247918	+	0	NA	Intergenic	AluSz|SINE|Alu	45453	NM_212481	10865	Hs.920	NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT rich interactive domain 5A (MRF1-like)	protein-coding
chr8.12476354.-	chr8	12476354	12476355	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46766	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr7.22130172.+	chr7	22130172	22130173	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-144630	NM_001127371	55536	Hs.744069	NM_001127370	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
chr15.24084621.-	chr15	24084621	24084622	-	0	NA	Intergenic	AluY|SINE|Alu	152171	NM_002487	4692	Hs.50130	NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	"necdin, melanoma antigen (MAGE) family member"	protein-coding
chr2.17721600.+	chr2	17721600	17721601	+	0	NA	promoter-TSS (NM_003385)	promoter-TSS (NM_003385)	-207	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
chr19.53027529.+	chr19	53027529	53027530	+	0	NA	Intergenic	AluSp|SINE|Alu	-3380	NM_001039886	388558	Hs.729294	NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
chr22.24563081.+	chr22	24563081	24563082	+	0	NA	"exon (NM_001201429, exon 31 of 36)"	"exon (NM_001201429, exon 31 of 36)"	-14363	NM_019601	56241	Hs.131819	NM_019601	ENSG00000099994	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
chr7.156795089.-	chr7	156795089	156795090	-	0	NA	Intergenic	Intergenic	-7040	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr16.632093.-	chr16	632093	632094	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7264	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr1.24928454.-	chr1	24928454	24928455	-	0	NA	"intron (NM_001010980, intron 3 of 3)"	AluY|SINE|Alu	41140	NM_005839	10250	Hs.18192	NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine/arginine repetitive matrix 1	protein-coding
chr2.207270718.+	chr2	207270718	207270719	+	0	NA	Intergenic	AluY|SINE|Alu	-37650	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr9.90885137.+	chr9	90885137	90885138	+	0	NA	Intergenic	AluJb|SINE|Alu	-118160	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr12.33592615.+	chr12	33592615	33592616	+	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	139	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chrX.31406319.+	chrX	31406319	31406320	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120096	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr3.82554682.-	chr3	82554682	82554683	-	0	NA	Intergenic	MER52A|LTR|ERV1	743732	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr20.53158268.-	chr20	53158268	53158269	-	0	NA	"intron (NM_018431, intron 1 of 7)"	AluSz|SINE|Alu	-66002	NM_018431	55816	Hs.656582	NM_018431	ENSG00000101134	DOK5	C20orf180	docking protein 5	protein-coding
chr4.53578.+	chr4	53578	53579	+	0	NA	"intron (NM_182524, intron 1 of 5)"	CpG	301	NM_001039127	255403	Hs.744444	NM_001039127		ZNF718	-	zinc finger protein 718	protein-coding
chrX.139520313.+	chrX	139520313	139520314	+	0	NA	Intergenic	AluSc|SINE|Alu	66912	NM_005634	6658	Hs.157429	NM_005634	ENSG00000134595	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
chr14.105158912.+	chr14	105158912	105158913	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	2969	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr4.2965050.-	chr4	2965050	2965051	-	0	NA	promoter-TSS (NM_003703)	promoter-TSS (NM_003703)	-68	NM_003703	8602	Hs.627133	NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES425|UTP2	NOP14 nucleolar protein	protein-coding
chr12.42632188.-	chr12	42632188	42632189	-	0	NA	promoter-TSS (NR_034000)	promoter-TSS (NR_034000)	34	NM_005748	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr16.5016323.-	chr16	5016323	5016324	-	0	NA	"intron (NM_014692, intron 2 of 15)"	AluSx1|SINE|Alu	-8005	NM_014692	9717	Hs.512856	NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14-like 5 (S. cerevisiae)	protein-coding
chr16.71647921.-	chr16	71647921	71647922	-	0	NA	Intergenic	AluSz|SINE|Alu	12135	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr5.74743620.-	chr5	74743620	74743621	-	0	NA	"intron (NM_031361, intron 3 of 16)"	AluJo|SINE|Alu	-63834	NM_005713	10087	Hs.270437	NM_001130105	ENSG00000113163	COL4A3BP	CERT|CERTL|GPBP|STARD11	"collagen, type IV, alpha 3 (Goodpasture antigen) binding protein"	protein-coding
chrX.133976882.+	chrX	133976882	133976883	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35659	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr20.36067894.+	chr20	36067894	36067895	+	0	NA	Intergenic	Intergenic	-81713	NM_005386	4826	Hs.504703	NM_005386	ENSG00000053438	NNAT	Peg5	neuronatin	protein-coding
chr20.1317839.-	chr20	1317839	1317840	-	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	7960	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr2.10130441.+	chr2	10130441	10130442	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSx1|SINE|Alu	38649	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr9.133797633.-	chr9	133797633	133797634	-	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-16606	NM_032843	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr5.176292792.+	chr5	176292792	176292793	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33541	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr9.100092104.+	chr9	100092104	100092105	+	0	NA	"intron (NR_036529, intron 27 of 44)"	AluY|SINE|Alu	22194	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
chr12.120962212.-	chr12	120962212	120962213	-	0	NA	"intron (NM_032314, intron 1 of 6)"	AluY|SINE|Alu	-4752	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr1.3022438.+	chr1	3022438	3022439	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22101	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr21.33279882.+	chr21	33279882	33279883	+	0	NA	"intron (NM_014586, intron 1 of 10)"	"intron (NM_014586, intron 1 of 10)"	34254	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr1.96602191.-	chr1	96602191	96602192	-	0	NA	Intergenic	AluSg|SINE|Alu	584984	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr6.4780641.+	chr6	4780641	4780642	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3961	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr8.95668740.+	chr8	95668740	95668741	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15376	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr3.122695627.-	chr3	122695627	122695628	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	646	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr21.34638750.+	chr21	34638750	34638751	+	0	NA	promoter-TSS (NM_000628)	promoter-TSS (NM_000628)	85	NM_000628	3588	Hs.654593	NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2	"interleukin 10 receptor, beta"	protein-coding
chr1.181074614.-	chr1	181074614	181074615	-	0	NA	Intergenic	CpG	-16976	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr11.915988.+	chr11	915988	915989	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-930	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr14.104269797.+	chr14	104269797	104269798	+	0	NA	"intron (NM_015316, intron 1 of 16)"	AluY|SINE|Alu	44130	NM_015316	23368	Hs.709297	NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	"protein phosphatase 1, regulatory subunit 13B"	protein-coding
chr20.32757604.-	chr20	32757604	32757605	-	0	NA	Intergenic	AluSc8|SINE|Alu	57519	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr3.5229451.+	chr3	5229451	5229452	+	0	NA	promoter-TSS (NM_014674)	promoter-TSS (NM_014674)	92	NM_014674	9695	Hs.224616	NM_014674	ENSG00000134109	EDEM1	EDEM	"ER degradation enhancer, mannosidase alpha-like 1"	protein-coding
chr9.14830639.+	chr9	14830639	14830640	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51108	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr8.104645120.-	chr8	104645120	104645121	-	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	-132144	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr17.20875647.-	chr17	20875647	20875648	-	0	NA	Intergenic	AluY|SINE|Alu	-70705	NM_015276	23326	Hs.462492	NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
chr12.106606463.-	chr12	106606463	106606464	-	0	NA	Intergenic	L1PA7|LINE|L1	-35250	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr7.1987134.-	chr7	1987134	1987135	-	0	NA	"intron (NM_001013836, intron 16 of 18)"	"intron (NM_001013836, intron 16 of 18)"	103245	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr19.3219079.+	chr19	3219079	3219080	+	0	NA	Intergenic	AluY|SINE|Alu	-5622	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr3.183988366.-	chr3	183988366	183988367	-	0	NA	"intron (NM_014693, intron 2 of 18)"	AluSp|SINE|Alu	5433	NM_001100120	9718	Hs.146161	NM_001037324	ENSG00000145194	ECE2	-	endothelin converting enzyme 2	protein-coding
chr10.324342.-	chr10	324342	324343	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98408	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr14.79735600.-	chr14	79735600	79735601	-	0	NA	"intron (NR_073547, intron 14 of 20)"	AluY|SINE|Alu	10082	NM_138970	9369	Hs.368307	NM_001105250	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
chr7.150812706.+	chr7	150812706	150812707	+	0	NA	"intron (NM_031946, intron 1 of 17)"	GC_rich|Low_complexity|Low_complexity	28880	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr12.75694254.+	chr12	75694254	75694255	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29582	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr9.130867507.-	chr9	130867507	130867508	-	0	NA	"intron (NM_001265614, intron 6 of 10)"	AluSx1|SINE|Alu	-6746	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr8.8559305.-	chr8	8559305	8559306	-	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	361	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr9.126691776.+	chr9	126691776	126691777	+	0	NA	"intron (NM_024820, intron 1 of 20)"	"intron (NM_024820, intron 1 of 20)"	641	NM_020946	57706	Hs.568340	NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608|RP11-230L22.3	DENN/MADD domain containing 1A	protein-coding
chr15.90776696.-	chr15	90776696	90776697	-	0	NA	promoter-TSS (NM_001013657)	promoter-TSS (NM_001013657)	-583	NM_006384	10519	Hs.715556	NM_006384		CIB1	CIB|KIP|KIP1|SIP2-28	calcium and integrin binding 1 (calmyrin)	protein-coding
chr8.57184599.-	chr8	57184599	57184600	-	0	NA	Intergenic	SVA_D|Other|Other	-48642	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr6.105584497.-	chr6	105584497	105584498	-	0	NA	promoter-TSS (NM_007073)	promoter-TSS (NM_007073)	-46	NM_007073	11149	Hs.221660	NM_001199563	ENSG00000112276	BVES	HBVES|POP1|POPDC1	blood vessel epicardial substance	protein-coding
chr8.123899511.-	chr8	123899511	123899512	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105610	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr13.26553002.+	chr13	26553002	26553003	+	0	NA	"intron (NM_016529, intron 35 of 36)"	AluY|SINE|Alu	72196	NM_001007538	387914	Hs.433791	NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa homolog 2 (Xenopus laevis)	protein-coding
chr22.38336364.-	chr22	38336364	38336365	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13290	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr7.61969455.-	chr7	61969455	61969456	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-794979	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr2.37899873.+	chr2	37899873	37899874	+	0	NA	promoter-TSS (NM_001270436)	promoter-TSS (NM_001270436)	-195	NM_001270436	10602	Hs.369574	NM_001270436	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
chr10.21843643.+	chr10	21843643	21843644	+	0	NA	"intron (NM_001195627, intron 4 of 4)"	AluSc|SINE|Alu	20069	NM_001195626	8028	Hs.30385	NM_001195626	ENSG00000078403	MLLT10	AF10	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10"	protein-coding
chr16.71647908.+	chr16	71647908	71647909	+	0	NA	Intergenic	AluSz|SINE|Alu	-12148	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr22.42027277.+	chr22	42027277	42027278	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9982	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr19.18264450.-	chr19	18264450	18264451	-	0	NA	"intron (NR_073517, intron 1 of 15)"	CpG	-462	NM_005027	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr5.694046.+	chr5	694046	694047	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-536	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr12.6734585.-	chr12	6734585	6734586	-	0	NA	"intron (NM_020400, intron 1 of 1)"	AluY|SINE|Alu	-6230	NM_001142961	57121	Hs.155538	NM_001142961	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
chr16.84670308.+	chr16	84670308	84670309	+	0	NA	Intergenic	AluY|SINE|Alu	-11823	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr8.60674644.+	chr8	60674644	60674645	+	0	NA	Intergenic	LTR12C|LTR|ERV1	519310	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr16.89208060.+	chr16	89208060	89208061	+	0	NA	"intron (NR_045667, intron 2 of 4)"	"intron (NR_045667, intron 2 of 4)"	5104	NR_045667	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr9.21995896.+	chr9	21995896	21995897	+	0	NA	"intron (NR_047537, intron 1 of 5)"	CpG	1106	NR_047536	100048912	Hs.512599	NR_047532	ENSG00000240498	CDKN2B-AS1	ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|p15AS	CDKN2B antisense RNA 1	miscRNA
chr22.49791851.-	chr22	49791851	49791852	-	0	NA	Intergenic	Intergenic	-259339	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr10.14719529.-	chr10	14719529	14719530	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97367	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr19.13741953.-	chr19	13741953	13741954	-	0	NA	Intergenic	AluSc8|SINE|Alu	116800	NM_030818	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding
chr3.47744678.+	chr3	47744678	47744679	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78727	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr5.1598283.+	chr5	1598283	1598284	+	0	NA	"non-coding (NR_003713, exon 4 of 4)"	"non-coding (NR_003713, exon 4 of 4)"	-3637	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3"	pseudo
chr20.62611085.-	chr20	62611085	62611086	-	0	NA	promoter-TSS (NM_080621)	promoter-TSS (NM_080621)	90	NM_080621	140700	Hs.27189	NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
chr5.12186574.+	chr5	12186574	12186575	+	0	NA	Intergenic	AluYa5|SINE|Alu	-282464	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	"catenin (cadherin-associated protein), delta 2"	protein-coding
chr5.128196991.+	chr5	128196991	128196992	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104219	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr14.21741121.+	chr14	21741121	21741122	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3483	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr6.2221757.+	chr6	2221757	2221758	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24111	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr16.50142554.-	chr16	50142554	50142555	-	0	NA	Intergenic	AluSz6|SINE|Alu	-42673	NM_182922	55027	Hs.733027	NM_182922	ENSG00000155393	HEATR3	SYO1	HEAT repeat containing 3	protein-coding
chr15.100514137.+	chr15	100514137	100514138	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-167005	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chrX.99100681.-	chrX	99100681	99100682	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94160	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr5.180045847.-	chr5	180045847	180045848	-	0	NA	"exon (NM_182925, exon 21 of 30)"	"exon (NM_182925, exon 21 of 30)"	27360	NM_052863	92304	Hs.62492	NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	"secretoglobin, family 3A, member 1"	protein-coding
chr21.47838726.-	chr21	47838726	47838727	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40136	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr2.10165489.+	chr2	10165489	10165490	+	0	NA	Intergenic	AluJo|SINE|Alu	-18193	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr8.137246147.+	chr8	137246147	137246148	+	0	NA	Intergenic	L1P3|LINE|L1	776431	NM_006558	10656	Hs.444558	NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	"KH domain containing, RNA binding, signal transduction associated 3"	protein-coding
chr5.2391236.-	chr5	2391236	2391237	-	0	NA	Intergenic	Intergenic	-360533	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr2.87655662.+	chr2	87655662	87655663	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-99312	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr3.42642395.-	chr3	42642395	42642396	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-177	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr3.53225243.+	chr3	53225243	53225244	+	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	30020	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr16.89117855.+	chr16	89117855	89117856	+	0	NA	Intergenic	Intergenic	-42362	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr1.51984040.-	chr1	51984040	51984041	-	0	NA	"intron (NM_001981, intron 1 of 24)"	"intron (NM_001981, intron 1 of 24)"	-955	NM_001981	2060	Hs.83722	NM_001159969	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
chr9.134449872.+	chr9	134449872	134449873	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43210	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr16.84017800.+	chr16	84017800	84017801	+	0	NA	"intron (NM_019065, intron 5 of 12)"	AluY|SINE|Alu	15563	NM_019065	54550	Hs.140950	NM_019065	ENSG00000103154	NECAB2	EFCBP2	N-terminal EF-hand calcium binding protein 2	protein-coding
chrX.46794132.-	chrX	46794132	46794133	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22264	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr5.166305033.-	chr5	166305033	166305034	-	0	NA	Intergenic	AluY|SINE|Alu	406810	NM_001122679	57451	Hs.631957	NM_001122679	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
chr19.4065803.-	chr19	4065803	4065804	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1013	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr16.2076757.-	chr16	2076757	2076758	-	0	NA	promoter-TSS (NM_001130012)	promoter-TSS (NM_001130012)	112	NM_001130012	9351	Hs.440896	NM_001130012	ENSG00000065054	SLC9A3R2	E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2"	protein-coding
chr19.34394374.-	chr19	34394374	34394375	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106623	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr17.43028719.-	chr17	43028719	43028720	-	0	NA	Intergenic	AluSp|SINE|Alu	3640	NM_001264573	146909	Hs.135094	NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
chr8.98787955.-	chr8	98787955	98787956	-	0	NA	"5' UTR (NM_018407, exon 1 of 7)"	"5' UTR (NM_018407, exon 1 of 7)"	-146	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr1.16970722.-	chr1	16970722	16970723	-	0	NA	Intergenic	Intergenic	1347	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
chr6.51859136.-	chr6	51859136	51859137	-	0	NA	"intron (NM_170724, intron 35 of 60)"	AluYk4|SINE|Alu	-93287	NM_170724	5314	Hs.662050	NM_138694	ENSG00000170927	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
chr20.34266403.+	chr20	34266403	34266404	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13525	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr7.4142341.+	chr7	4142341	4142342	+	0	NA	"intron (NM_152744, intron 22 of 44)"	"intron (NM_152744, intron 22 of 44)"	-26976	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr8.41583319.+	chr8	41583319	41583320	+	0	NA	"exon (NM_000037, exon 6 of 43)"	"exon (NM_000037, exon 6 of 43)"	-60515	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr5.2391227.-	chr5	2391227	2391228	-	0	NA	Intergenic	Intergenic	-360542	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr11.72160489.-	chr11	72160489	72160490	-	0	NA	Intergenic	AluY|SINE|Alu	14765	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr6.1035025.+	chr6	1035025	1035026	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66542	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chr5.141451812.+	chr5	141451812	141451813	+	0	NA	Intergenic	AluSq|SINE|Alu	-36512	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr2.121468005.+	chr2	121468005	121468006	+	0	NA	Intergenic	Intergenic	-86862	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chrX.53111614.+	chrX	53111614	53111615	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	72	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.537694.-	chr16	537694	537695	-	0	NA	"intron (NM_001142272, intron 2 of 11)"	"intron (NM_001142272, intron 2 of 11)"	-12844	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr16.78282854.-	chr16	78282854	78282855	-	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	-149527	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr10.135031506.-	chr10	135031506	135031507	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12272	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chrX.153736375.+	chrX	153736375	153736376	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8191	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr7.104213588.-	chr7	104213588	104213589	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSx1|SINE|Alu	-230951	NR_034141	645591	Hs.658835	NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	miscRNA
chr2.202046025.-	chr2	202046025	202046026	-	0	NA	Intergenic	AluSz|SINE|Alu	1596	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr3.36421980.-	chr3	36421980	36421981	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	117	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr3.149374880.+	chr3	149374880	149374881	+	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	932	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr19.1237025.-	chr19	1237025	1237026	-	0	NA	"intron (NM_152769, intron 1 of 8)"	CpG	-965	NM_152769	255057	Hs.346575	NM_152769	ENSG00000099625	C19orf26	DOS	chromosome 19 open reading frame 26	protein-coding
chr20.46533175.+	chr20	46533175	46533176	+	0	NA	Intergenic	Intergenic	-117815	NM_198596	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr7.2933102.+	chr7	2933102	2933103	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49143	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr18.5524161.+	chr18	5524161	5524162	+	0	NA	"intron (NM_012307, intron 1 of 22)"	"intron (NM_012307, intron 1 of 22)"	19825	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr2.71132006.-	chr2	71132006	71132007	-	0	NA	"intron (NM_012476, intron 1 of 2)"	CpG	-4286	NM_012476	25806	Hs.249170	NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
chr14.102576976.+	chr14	102576976	102576977	+	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	-23464	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr16.28435256.+	chr16	28435256	28435257	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2519	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr1.65532950.-	chr1	65532950	65532951	-	0	NA	Intergenic	CpG	8759	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr6.74427452.+	chr6	74427452	74427453	+	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	21938	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr10.12405341.+	chr10	12405341	12405342	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13758	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr6.21206341.+	chr6	21206341	21206342	+	0	NA	"intron (NM_017774, intron 15 of 15)"	AluYc|SINE|Alu	-387631	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
chr14.97183897.+	chr14	97183897	97183898	+	0	NA	Intergenic	AluY|SINE|Alu	-79787	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr17.4435079.-	chr17	4435079	4435080	-	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	-23602	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr7.45750419.-	chr7	45750419	45750420	-	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	-58198	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr21.37627710.-	chr21	37627710	37627711	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64777	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr2.230314750.+	chr2	230314750	230314751	+	0	NA	"intron (NM_139072, intron 7 of 12)"	AluSg|SINE|Alu	-178693	NM_001100818	55022	Hs.409352	NM_001100818	ENSG00000153823	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
chr19.1792208.-	chr19	1792208	1792209	-	0	NA	"intron (NR_047593, intron 18 of 28)"	"intron (NR_047593, intron 18 of 28)"	-20028	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr17.37701016.-	chr17	37701016	37701017	-	0	NA	Intergenic	AluSp|SINE|Alu	-63159	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr1.21761372.+	chr1	21761372	21761373	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5211	NR_046176	84224	Hs.325422	NM_001256416	ENSG00000142794	NBPF3	AE2	"neuroblastoma breakpoint family, member 3"	protein-coding
chr3.31574017.-	chr3	31574017	31574018	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	474	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr10.134886645.-	chr10	134886645	134886646	-	0	NA	Intergenic	Intergenic	14764	NM_001083909	84435	Hs.435183	NM_032422	ENSG00000197177	GPR123	-	G protein-coupled receptor 123	protein-coding
chr2.202898664.-	chr2	202898664	202898665	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	646	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr3.46709797.+	chr3	46709797	46709798	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9102	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr11.89400840.+	chr11	89400840	89400841	+	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	8375	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr13.48538743.-	chr13	48538743	48538744	-	0	NA	"intron (NM_003850, intron 6 of 10)"	AluY|SINE|Alu	-36719	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr15.24084622.-	chr15	24084622	24084623	-	0	NA	Intergenic	AluY|SINE|Alu	152172	NM_002487	4692	Hs.50130	NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	"necdin, melanoma antigen (MAGE) family member"	protein-coding
chr22.23757282.+	chr22	23757282	23757283	+	0	NA	Intergenic	Intergenic	-12483	NR_003950	150244	Hs.386693	NM_152509		ZDHHC8P1	ZDHHC8P	"zinc finger, DHHC-type containing 8 pseudogene 1"	pseudo
chr10.31570621.-	chr10	31570621	31570622	-	0	NA	Intergenic	AluY|SINE|Alu	-37403	NR_024284	220930	Hs.372654	NR_024284		ZEB1-AS1	-	ZEB1 antisense RNA 1	miscRNA
chr3.126260589.-	chr3	126260589	126260590	-	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	-17169	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chrM.9319.+	chrM	9319	9320	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr11.70049994.+	chr11	70049994	70049995	+	0	NA	"intron (NM_003824, intron 1 of 1)"	"intron (NM_003824, intron 1 of 1)"	725	NM_003824	8772	Hs.86131	NM_003824	ENSG00000168040	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
chr10.6019274.+	chr10	6019274	6019275	+	0	NA	"intron (NM_001256765, intron 1 of 7)"	CpG	300	NM_002189	3601	Hs.445124	NM_001243539	ENSG00000134470	IL15RA	CD215	"interleukin 15 receptor, alpha"	protein-coding
chr2.25142806.-	chr2	25142806	25142807	-	0	NA	promoter-TSS (NM_004036)	promoter-TSS (NM_004036)	751	NM_004036	109	Hs.467898	NM_004036	ENSG00000138031	ADCY3	AC3	adenylate cyclase 3	protein-coding
chr19.39887084.-	chr19	39887084	39887085	-	0	NA	"intron (NM_017592, intron 3 of 3)"	"intron (NM_017592, intron 3 of 3)"	-5121	NM_017592	55588	Hs.611541	NM_017592	ENSG00000063322	MED29	IXL	mediator complex subunit 29	protein-coding
chr19.2400855.-	chr19	2400855	2400856	-	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	-11071	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chr5.2860475.-	chr5	2860475	2860476	-	0	NA	Intergenic	Intergenic	-108213	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr7.66480073.-	chr7	66480073	66480074	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18281	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr6.46742406.-	chr6	46742406	46742407	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18688	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr16.1228077.+	chr16	1228077	1228078	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24836	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr3.42630485.+	chr3	42630485	42630486	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1813	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr7.158462214.-	chr7	158462214	158462215	-	0	NA	"intron (NM_017760, intron 13 of 27)"	AluSx|SINE|Alu	-35306	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr3.124468909.+	chr3	124468909	124468910	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19696	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr5.1770135.+	chr5	1770135	1770136	+	0	NA	Intergenic	L1MB5|LINE|L1	29821	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr17.47735121.-	chr17	47735121	47735122	-	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	-20404	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr13.108435262.-	chr13	108435262	108435263	-	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	-84198	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr7.1147522.+	chr7	1147522	1147523	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19799	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr15.41539499.+	chr15	41539499	41539500	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16062	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr5.2391221.-	chr5	2391221	2391222	-	0	NA	Intergenic	Intergenic	-360548	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr19.5409954.+	chr19	5409954	5409955	+	0	NA	Intergenic	AluY|SINE|Alu	-45472	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr6.168395141.+	chr6	168395141	168395142	+	0	NA	Intergenic	AluSx|SINE|Alu	-17522	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr5.45596274.-	chr5	45596274	45596275	-	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	-99946	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr17.16010324.-	chr17	16010324	16010325	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87629	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr4.42659044.+	chr4	42659044	42659045	+	0	NA	promoter-TSS (NM_001105529)	promoter-TSS (NM_001105529)	78	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr1.197233914.+	chr1	197233914	197233915	+	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	-3420	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr19.53979691.+	chr19	53979691	53979692	+	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	8702	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr5.175732255.+	chr5	175732255	175732256	+	0	NA	"intron (NM_198567, intron 3 of 8)"	SVA_F|Other|Other	56554	NM_001079685	57179	Hs.743257	NM_001079684	ENSG00000122203	KIAA1191	p60MONOX	KIAA1191	protein-coding
chr5.178157740.-	chr5	178157740	178157741	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	37	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr6.126111901.+	chr6	126111901	126111902	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-8	NM_001122842	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr19.5409800.-	chr19	5409800	5409801	-	0	NA	Intergenic	AluSz|SINE|Alu	45626	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chrX.53111673.+	chrX	53111673	53111674	+	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	131	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.131639063.-	chr9	131639063	131639064	-	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	-5291	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr11.45810365.+	chr11	45810365	45810366	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15258	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr14.60336423.-	chr14	60336423	60336424	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1134	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr17.28042295.+	chr17	28042295	28042296	+	0	NA	"intron (NM_033389, intron 2 of 14)"	AluY|SINE|Alu	-93854	NM_032854	84940	Hs.143046	NM_032854	ENSG00000167549	CORO6	-	coronin 6	protein-coding
chr16.1237127.+	chr16	1237127	1237128	+	0	NA	"intron (NM_021098, intron 2 of 34)"	CpG	33886	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr12.79439075.+	chr12	79439075	79439076	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-358	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr21.11107118.-	chr21	11107118	11107119	-	0	NA	Intergenic	CpG	8181	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr10.133869122.-	chr10	133869122	133869123	-	0	NA	Intergenic	Intergenic	49191	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr7.56888272.+	chr7	56888272	56888273	+	0	NA	Intergenic	Intergenic	61567	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chr9.139555594.+	chr9	139555594	139555595	+	0	NA	"intron (NR_046367, intron 1 of 9)"	"intron (NR_046367, intron 1 of 9)"	-1785	NM_016215	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr14.105242475.+	chr14	105242475	105242476	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17463	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr15.89011159.+	chr15	89011159	89011160	+	0	NA	promoter-TSS (NM_022163)	promoter-TSS (NM_022163)	475	NM_176805	64963	Hs.111286	NM_022839	ENSG00000181991	MRPS11	HCC-2	mitochondrial ribosomal protein S11	protein-coding
chr19.48836570.+	chr19	48836570	48836571	+	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	7941	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr1.227982932.+	chr1	227982932	227982933	+	0	NA	Intergenic	Intergenic	-20486	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr7.66480049.+	chr7	66480049	66480050	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18257	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr7.156795116.+	chr7	156795116	156795117	+	0	NA	Intergenic	Intergenic	7013	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr2.79863149.-	chr2	79863149	79863150	-	0	NA	"intron (NM_001164883, intron 1 of 16)"	AluY|SINE|Alu	-13336	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr12.133019235.+	chr12	133019235	133019236	+	0	NA	Intergenic	Intergenic	-47922	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr10.104255220.-	chr10	104255220	104255221	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7292	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr19.45660361.-	chr19	45660361	45660362	-	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	-3047	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr21.11130085.+	chr21	11130085	11130086	+	0	NA	Intergenic	AluSz6|SINE|Alu	-31148	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr16.58021567.+	chr16	58021567	58021568	+	0	NA	"3' UTR (NM_199456, exon 8 of 8)"	"3' UTR (NM_199456, exon 8 of 8)"	11228	NM_199456	374739	Hs.132976	NM_199046		TEPP	-	"testis, prostate and placenta expressed"	protein-coding
chr2.196316361.+	chr2	196316361	196316362	+	0	NA	Intergenic	AluSc|SINE|Alu	-205171	NM_001127257	57181	Hs.650158	NM_001127257	ENSG00000196950	SLC39A10	LZT-Hs2	"solute carrier family 39 (zinc transporter), member 10"	protein-coding
chr20.61885480.-	chr20	61885480	61885481	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-150	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr1.28207919.+	chr1	28207919	28207920	+	0	NA	"intron (NM_004848, intron 3 of 4)"	AluY|SINE|Alu	8864	NM_001039477	9473	Hs.10649	NM_001039477	ENSG00000130775	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
chr4.106689307.+	chr4	106689307	106689308	+	0	NA	"intron (NM_024751, intron 5 of 11)"	AluY|SINE|Alu	57337	NM_001031720	79807	Hs.161429	NM_001031720	ENSG00000138780	GSTCD	-	"glutathione S-transferase, C-terminal domain containing"	protein-coding
chr21.43198248.-	chr21	43198248	43198249	-	0	NA	Intergenic	Intergenic	10999	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr20.3879977.-	chr20	3879977	3879978	-	0	NA	"intron (NM_153640, intron 1 of 6)"	AluSx|SINE|Alu	-9514	NM_153640	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
chr12.26964555.-	chr12	26964555	26964556	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21576	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr9.15428390.+	chr9	15428390	15428391	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5608	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chr1.149646782.+	chr1	149646782	149646783	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70329	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr1.163468689.-	chr1	163468689	163468690	-	0	NA	Intergenic	SVA_A|Other|Other	-176966	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr3.133504051.-	chr3	133504051	133504052	-	0	NA	"intron (NM_021203, intron 1 of 7)"	SVA_F|Other|Other	-1174	NM_021203	58477	Hs.12152	NM_021203		SRPRB	APMCF1	"signal recognition particle receptor, B subunit"	protein-coding
chr19.1663579.+	chr19	1663579	1663580	+	0	NA	Intergenic	AluSp|SINE|Alu	-11251	NM_003200	6929	Hs.657044	NM_001136139	ENSG00000071564	TCF3	E2A|E47|ITF1|TCF-3|VDIR|bHLHb21	transcription factor 3	protein-coding
chr17.4435109.+	chr17	4435109	4435110	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23572	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr17.15588440.-	chr17	15588440	15588441	-	0	NA	Intergenic	AluY|SINE|Alu	2247	NM_006470	10626	Hs.123534	NM_006470	ENSG00000221926	TRIM16	EBBP	tripartite motif containing 16	protein-coding
chr19.5409966.+	chr19	5409966	5409967	+	0	NA	Intergenic	AluY|SINE|Alu	-45460	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr13.22245226.+	chr13	22245226	22245227	+	0	NA	promoter-TSS (NM_002010)	promoter-TSS (NM_002010)	11	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	GAF|HBFG-9|SYNS3	fibroblast growth factor 9 (glia-activating factor)	protein-coding
chr9.131013032.+	chr9	131013032	131013033	+	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	-5723	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr19.30562836.-	chr19	30562836	30562837	-	0	NA	Intergenic	Intergenic	-129690	NM_003796	8725	Hs.466391	NM_001252641		URI1	C19orf2|NNX3|PPP1R19|RMP|URI	"URI1, prefoldin-like chaperone"	protein-coding
chr19.34270539.+	chr19	34270539	34270540	+	0	NA	Intergenic	Intergenic	-17212	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr15.34980227.-	chr15	34980227	34980228	-	0	NA	Intergenic	AluY|SINE|Alu	-66555	NM_020660	57369	Hs.283816	NM_020660		GJD2	CX36|GJA9	"gap junction protein, delta 2, 36kDa"	protein-coding
chr4.55034973.+	chr4	55034973	55034974	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60291	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr19.4124234.-	chr19	4124234	4124235	-	0	NA	promoter-TSS (NM_030662)	promoter-TSS (NM_030662)	108	NM_030662	5605	Hs.465627	NM_030662	ENSG00000126934	MAP2K2	MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
chr8.126442287.-	chr8	126442287	126442288	-	0	NA	promoter-TSS (NM_025195)	promoter-TSS (NM_025195)	276	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr19.23432221.-	chr19	23432221	23432222	-	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	-951	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr16.81282945.+	chr16	81282945	81282946	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10649	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr13.84580275.+	chr13	84580275	84580276	+	0	NA	Intergenic	AluY|SINE|Alu	-123747	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr17.38356729.+	chr17	38356729	38356730	+	0	NA	Intergenic	AluY|SINE|Alu	-18845	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr22.51042026.+	chr22	51042026	51042027	+	0	NA	"intron (NM_012324, intron 3 of 11)"	"intron (NM_012324, intron 3 of 11)"	464	NM_016431	23542	Hs.558180	NM_012324	ENSG00000008735	MAPK8IP2	IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
chr12.89747575.-	chr12	89747575	89747576	-	0	NA	Intergenic	CpG-5623	1279	NM_022652	1848	Hs.718640	NM_001946	ENSG00000139318	DUSP6	MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chr3.36421981.-	chr3	36421981	36421982	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	116	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr5.178032034.-	chr5	178032034	178032035	-	0	NA	"intron (NM_020666, intron 11 of 12)"	AluSx1|SINE|Alu	14478	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr17.8252940.+	chr17	8252940	8252941	+	0	NA	Intergenic	AluSq2|SINE|Alu	9752	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr2.946248.-	chr2	946248	946249	-	0	NA	promoter-TSS (NM_018968)	promoter-TSS (NM_018968)	306	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr20.47588413.-	chr20	47588413	47588414	-	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	-50138	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr1.24829823.-	chr1	24829823	24829824	-	0	NA	promoter-TSS (NR_045407)	promoter-TSS (NR_045407)	-436	NM_001251981	11123	Hs.737226	NM_001251977	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
chr1.12082180.-	chr1	12082180	12082181	-	0	NA	"exon (NM_021933, exon 3 of 10)"	"exon (NM_021933, exon 3 of 10)"	-2881	NM_021933	60672	Hs.8595	NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
chr3.102973947.-	chr3	102973947	102973948	-	0	NA	Intergenic	SVA_D|Other|Other	-820088	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr5.34872905.+	chr5	34872905	34872906	+	0	NA	"intron (NM_144725, intron 8 of 10)"	AluSx|SINE|Alu	33636	NM_144725	153657	Hs.435742	NM_144725	ENSG00000205838	TTC23L	MC25-1	tetratricopeptide repeat domain 23-like	protein-coding
chr2.229496730.+	chr2	229496730	229496731	+	0	NA	Intergenic	AluYc|SINE|Alu	-450369	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr2.224599748.-	chr2	224599748	224599749	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102571	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr12.122752756.-	chr12	122752756	122752757	-	0	NA	Intergenic	AluY|SINE|Alu	1688	NM_022916	65082	Hs.592009	NM_022916		VPS33A	-	vacuolar protein sorting 33 homolog A (S. cerevisiae)	protein-coding
chrX.81762750.+	chrX	81762750	81762751	+	0	NA	Intergenic	AluY|SINE|Alu	-1000519	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr3.170002887.-	chr3	170002887	170002888	-	0	NA	"intron (NM_002740, intron 12 of 17)"	AluY|SINE|Alu	-62667	NM_002740	5584	Hs.478199	NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	"protein kinase C, iota"	protein-coding
chr16.1845102.-	chr16	1845102	1845103	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	193	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr8.141109653.+	chr8	141109653	141109654	+	0	NA	"intron (NM_031466, intron 17 of 22)"	CpG	358208	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr1.181058197.+	chr1	181058197	181058198	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	559	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr5.9328754.-	chr5	9328754	9328755	-	0	NA	"intron (NM_003966, intron 4 of 22)"	AluSq|SINE|Alu	-217479	NM_003966	9037	Hs.27621	NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A"	protein-coding
chr1.6391525.-	chr1	6391525	6391526	-	0	NA	"intron (NM_181864, intron 4 of 8)"	MLT1C|LTR|ERVL-MaLR	-27479	NM_181866	11332	Hs.126137	NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|RP1-120G22.10|hBACH	acyl-CoA thioesterase 7	protein-coding
chr21.47838736.-	chr21	47838736	47838737	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40126	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr19.10420459.+	chr19	10420459	10420460	+	0	NA	promoter-TSS (NM_001103167)	promoter-TSS (NM_001103167)	-226	NM_001103167	100125288	Hs.709296	NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	"zinc finger, GATA-like protein 1"	protein-coding
chr16.88104928.+	chr16	88104928	88104929	+	0	NA	"intron (NM_001173540, intron 11 of 12)"	"intron (NM_001173540, intron 11 of 12)"	101304	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr2.148821883.-	chr2	148821883	148821884	-	0	NA	"intron (NM_018328, intron 2 of 14)"	AluY|SINE|Alu	42710	NM_181742	5000	Hs.558364	NM_001190879		ORC4	ORC4L|ORC4P	"origin recognition complex, subunit 4"	protein-coding
chr17.74707068.-	chr17	74707068	74707069	-	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	12	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr18.43723424.+	chr18	43723424	43723425	+	0	NA	Intergenic	AluY|SINE|Alu	-30564	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr12.57177821.+	chr12	57177821	57177822	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20713	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr22.45453857.-	chr22	45453857	45453858	-	0	NA	Intergenic	AluY|SINE|Alu	48048	NM_001135862	112885	Hs.254097	NM_001135862	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
chr7.97984081.+	chr7	97984081	97984082	+	0	NA	"intron (NM_018842, intron 3 of 13)"	"intron (NM_018842, intron 3 of 13)"	46346	NM_018842	55971	Hs.656063	NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAI1-associated protein 2-like 1	protein-coding
chr8.43543431.+	chr8	43543431	43543432	+	0	NA	Intergenic	SVA_D|Other|Other	395846	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr4.5892134.-	chr4	5892134	5892135	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1819	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr4.15780462.-	chr4	15780462	15780463	-	0	NA	"intron (NM_001775, intron 1 of 7)"	CpG	-531	NM_001775	952	Hs.479214	NM_001775		CD38	T10	CD38 molecule	protein-coding
chr10.104209677.-	chr10	104209677	104209678	-	0	NA	TTS (NM_024886)	TTS (NM_024886)	-103	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr4.42658292.-	chr4	42658292	42658293	-	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	-830	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr19.267124.+	chr19	267124	267125	+	0	NA	Intergenic	CpG	24045	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr11.63715955.+	chr11	63715955	63715956	+	0	NA	"intron (NM_024771, intron 3 of 7)"	AluY|SINE|Alu	9513	NM_024771	79829	Hs.523753	NM_024771	ENSG00000110583	NAA40	NAT11|PATT1	"N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)"	protein-coding
chr6.170055327.-	chr6	170055327	170055328	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46832	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr6.12012486.+	chr6	12012486	12012487	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-238	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr14.105242442.+	chr14	105242442	105242443	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17496	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr16.4537759.+	chr16	4537759	4537760	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8100	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr9.25713526.+	chr9	25713526	25713527	+	0	NA	Intergenic	AluY|SINE|Alu	-34670	NM_001004125	286319	Hs.606014	NM_001004125	ENSG00000198680	TUSC1	TSG-9|TSG9	tumor suppressor candidate 1	protein-coding
chr16.3229156.-	chr16	3229156	3229157	-	0	NA	Intergenic	Intergenic	25091	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr9.140353184.-	chr9	140353184	140353185	-	0	NA	"intron (NM_001130971, intron 1 of 13)"	CpG-27476	-602	NM_015537	26012	Hs.455336	NM_001130969	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
chr11.119091837.-	chr11	119091837	119091838	-	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	-14851	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr6.53738365.-	chr6	53738365	53738366	-	0	NA	"intron (NM_018214, intron 2 of 13)"	AluY|SINE|Alu	-78587	NM_018214	55227	Hs.732252	NM_025168	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
chr20.62108093.-	chr20	62108093	62108094	-	0	NA	Intergenic	AluSq2|SINE|Alu	4100	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr20.60832367.+	chr20	60832367	60832368	+	0	NA	"intron (NM_014835, intron 2 of 13)"	"intron (NM_014835, intron 2 of 13)"	18787	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr2.21484601.+	chr2	21484601	21484602	+	0	NA	Intergenic	Intergenic	-217656	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr20.46019388.+	chr20	46019388	46019389	+	0	NA	Intergenic	Intergenic	-33914	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr12.70156402.-	chr12	70156402	70156403	-	0	NA	"intron (NM_022456, intron 3 of 10)"	AluY|SINE|Alu	16352	NM_001024647	117177	Hs.258209	NM_175626	ENSG00000127328	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
chr1.161879493.+	chr1	161879493	161879494	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114151	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr17.38239326.+	chr17	38239326	38239327	+	0	NA	"intron (NM_199334, intron 4 of 8)"	AluY|SINE|Alu	17652	NM_021724	9572	Hs.592130	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	"nuclear receptor subfamily 1, group D, member 1"	protein-coding
chr19.45524617.-	chr19	45524617	45524618	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17681	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr3.102973880.+	chr3	102973880	102973881	+	0	NA	Intergenic	SVA_D|Other|Other	820021	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr8.81372750.+	chr8	81372750	81372751	+	0	NA	Intergenic	AluY|SINE|Alu	-25104	NM_001277145	65986	Hs.709604	NM_001105539	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
chr1.31248121.+	chr1	31248121	31248122	+	0	NA	Intergenic	Intergenic	-17438	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr14.105242446.-	chr14	105242446	105242447	-	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	-17492	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr14.97125931.-	chr14	97125931	97125932	-	0	NA	Intergenic	AluSz|SINE|Alu	137753	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr11.128041190.-	chr11	128041190	128041191	-	0	NA	Intergenic	AluY|SINE|Alu	-351015	NM_005238	2113	Hs.369438	NM_001143820	ENSG00000134954	ETS1	ETS-1|EWSR2	v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	protein-coding
chr10.89168004.+	chr10	89168004	89168005	+	0	NA	promoter-TSS (NR_046091)	promoter-TSS (NR_046091)	-547	NR_046091	728218	Hs.713428	NR_046091		LINC00864	-	long intergenic non-protein coding RNA 864	miscRNA
chr1.217394765.-	chr1	217394765	217394766	-	0	NA	Intergenic	AluSq2|SINE|Alu	83668	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr19.41641960.-	chr19	41641960	41641961	-	0	NA	Intergenic	CpG	-21607	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr6.46742376.-	chr6	46742376	46742377	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18718	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr6.170055360.+	chr6	170055360	170055361	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46799	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr7.5355959.-	chr7	5355959	5355960	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33398	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr2.217090972.-	chr2	217090972	217090973	-	0	NA	Intergenic	SVA_E|Other|Other	-9360	NR_037701	150967	Hs.56876	NM_001199924	ENSG00000260804	PKI55	-	DKFZp434H1419	miscRNA
chr22.38336380.+	chr22	38336380	38336381	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13274	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr2.10952960.+	chr2	10952960	10952961	+	0	NA	promoter-TSS (NM_005742)	promoter-TSS (NM_005742)	0	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr16.88333465.-	chr16	88333465	88333466	-	0	NA	Intergenic	Intergenic	160414	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr3.9429726.+	chr3	9429726	9429727	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9448	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr3.126260580.+	chr3	126260580	126260581	+	0	NA	"exon (NM_152889, exon 3 of 3)"	"exon (NM_152889, exon 3 of 3)"	17178	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding
chr16.79635124.+	chr16	79635124	79635125	+	0	NA	promoter-TSS (NM_005360)	promoter-TSS (NM_005360)	-502	NM_001031804	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	protein-coding
chr17.27070058.+	chr17	27070058	27070059	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-965	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr7.157261541.-	chr7	157261541	157261542	-	0	NA	Intergenic	Intergenic	-105573	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr7.1147510.+	chr7	1147510	1147511	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19787	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr18.11086394.+	chr18	11086394	11086395	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62367	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr17.37768977.-	chr17	37768977	37768978	-	0	NA	Intergenic	Intergenic	4802	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr2.43595157.-	chr2	43595157	43595158	-	0	NA	"intron (NM_022065, intron 29 of 37)"	AluSc8|SINE|Alu	-140807	NR_027251	100129726	Hs.194480	NM_178529		LOC100129726	-	uncharacterized LOC100129726	miscRNA
chr3.20070763.-	chr3	20070763	20070764	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10761	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr2.85830147.-	chr2	85830147	85830148	-	0	NA	promoter-TSS (NM_001031738)	promoter-TSS (NM_001031738)	-182	NR_046347	10713	Hs.654745	NM_001256725	ENSG00000168883	USP39	65K|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
chrX.12751729.+	chrX	12751729	12751730	+	0	NA	Intergenic	AluY|SINE|Alu	-57745	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr19.45678447.-	chr19	45678447	45678448	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3054	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr1.113336849.+	chr1	113336849	113336850	+	0	NA	Intergenic	MER70B|LTR|ERVL	73660	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr10.126078348.-	chr10	126078348	126078349	-	0	NA	Intergenic	Intergenic	-29197	NM_000274	4942	Hs.523332	NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
chr6.165205837.+	chr6	165205837	165205838	+	0	NA	Intergenic	AluYb8|SINE|Alu	517274	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr2.61306995.-	chr2	61306995	61306996	-	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	-13632	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr12.38493581.-	chr12	38493581	38493582	-	0	NA	Intergenic	Intergenic	216976	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr15.74658465.+	chr15	74658465	74658466	+	0	NA	promoter-TSS (NM_001099773)	promoter-TSS (NM_001099773)	88	NM_001099773	1583	Hs.303980	NM_000781	ENSG00000140459	CYP11A1	CYP11A|CYPXIA1|P450SCC	"cytochrome P450, family 11, subfamily A, polypeptide 1"	protein-coding
chr15.37172786.-	chr15	37172786	37172787	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-5948	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr5.501526.+	chr5	501526	501527	+	0	NA	"intron (NM_004174, intron 1 of 16)"	"intron (NM_004174, intron 1 of 16)"	23023	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	NHE3	"solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3"	protein-coding
chr15.41674367.-	chr15	41674367	41674368	-	0	NA	Intergenic	SVA_F|Other|Other	-20291	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr3.164119681.+	chr3	164119681	164119682	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676602	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr17.79660671.+	chr17	79660671	79660672	+	0	NA	"intron (NM_004712, intron 9 of 21)"	"intron (NM_004712, intron 9 of 21)"	9709	NM_004712	9146	Hs.661056	NM_004712	ENSG00000185359	HGS	HRS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein-coding
chr15.63892656.-	chr15	63892656	63892657	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-370	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr19.21652224.+	chr19	21652224	21652225	+	0	NA	Intergenic	AluY|SINE|Alu	-14293	NR_037194	400680	Hs.710554	NR_037194	ENSG00000268658	LOC400680	-	uncharacterized LOC400680	miscRNA
chr9.11197025.-	chr9	11197025	11197026	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584302	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr19.49242348.-	chr19	49242348	49242349	-	0	NA	"exon (NM_017805, exon 3 of 12)"	"exon (NM_017805, exon 3 of 12)"	-1622	NM_017805	54922	Hs.233955	NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
chr1.3022466.+	chr1	3022466	3022467	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22073	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr8.42217731.+	chr8	42217731	42217732	+	0	NA	"intron (NM_002690, intron 9 of 13)"	AluSz|SINE|Alu	16943	NM_014420	27121	Hs.159311	NM_014420	ENSG00000104371	DKK4	DKK-4	dickkopf homolog 4 (Xenopus laevis)	protein-coding
chr2.220430168.+	chr2	220430168	220430169	+	0	NA	"exon (NM_001173408, exon 6 of 9)"	"exon (NM_001173408, exon 6 of 9)"	6100	NM_001173408	23363	Hs.526594	NM_001173408	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
chr4.620076.+	chr4	620076	620077	+	0	NA	"intron (NM_000283, intron 1 of 21)"	"intron (NM_000283, intron 1 of 21)"	713	NM_001145291	5158	Hs.654544	NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	"phosphodiesterase 6B, cGMP-specific, rod, beta"	protein-coding
chr3.60485282.+	chr3	60485282	60485283	+	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	751851	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr7.150812733.-	chr7	150812733	150812734	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28907	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr5.1494507.-	chr5	1494507	1494508	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29569	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr3.40406889.+	chr3	40406889	40406890	+	0	NA	Intergenic	AluY|SINE|Alu	-21784	NM_001248	956	Hs.441145	NM_001248	ENSG00000168032	ENTPD3	CD39L3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding
chr17.40316816.+	chr17	40316816	40316817	+	0	NA	"intron (NM_012285, intron 11 of 16)"	AluSx|SINE|Alu	-9754	NM_004583	5878	Hs.650382	NM_001252039	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	"RAB5C, member RAS oncogene family"	protein-coding
chr18.5524263.+	chr18	5524263	5524264	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19723	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr14.58765919.+	chr14	58765919	58765920	+	0	NA	"intron (NM_002892, intron 1 of 23)"	CpG	697	NM_023000	5926	Hs.161000	NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT rich interactive domain 4A (RBP1-like)	protein-coding
chr8.95668743.-	chr8	95668743	95668744	-	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	-15379	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr7.63708645.+	chr7	63708645	63708646	+	0	NA	"intron (NM_153363, intron 1 of 4)"	THE1D|LTR|ERVL-MaLR	19793	NM_153363	168417	Hs.520884	NM_153363	ENSG00000197123	ZNF679	-	zinc finger protein 679	protein-coding
chr2.90481114.-	chr2	90481114	90481115	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1366861	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr16.58300801.-	chr16	58300801	58300802	-	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	-16961	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr16.75552008.-	chr16	75552008	75552009	-	0	NA	Intergenic	AluY|SINE|Alu	-17060	NM_024533	23563	Hs.710689	NM_024533	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5	protein-coding
chrY.8786229.-	chrY	8786229	8786230	-	0	NA	Intergenic	SVA_C|Other|Other	100806	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr14.102954938.+	chr14	102954938	102954939	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21190	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr1.161879473.-	chr1	161879473	161879474	-	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	-114171	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr12.132116765.-	chr12	132116765	132116766	-	0	NA	Intergenic	L1ME1|LINE|L1	78867	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr3.164119722.-	chr3	164119722	164119723	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676561	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr3.159943395.+	chr3	159943395	159943396	+	0	NA	promoter-TSS (NM_001168214)	promoter-TSS (NM_001168214)	-28	NM_001168214	401097	Hs.729755	NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
chr3.71746097.+	chr3	71746097	71746098	+	0	NA	"intron (NM_001134650, intron 4 of 7)"	AluY|SINE|Alu	28429	NM_001134651	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr11.67346420.-	chr11	67346420	67346421	-	0	NA	Intergenic	AluY|SINE|Alu	4646	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr12.109747614.+	chr12	109747614	109747615	+	0	NA	promoter-TSS (NM_213596)	promoter-TSS (NM_213596)	-589	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
chr3.160673519.+	chr3	160673519	160673520	+	0	NA	"intron (NM_139245, intron 1 of 3)"	AluY|SINE|Alu	149164	NM_033169	8706	Hs.418062	NM_001038628	ENSG00000169255	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)"	protein-coding
chr20.2804838.-	chr20	2804838	2804839	-	0	NA	Intergenic	SVA_E|Other|Other	-7862	NM_001167670	100288797	Hs.664180	NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
chr4.65343989.+	chr4	65343989	65343990	+	0	NA	Intergenic	AluY|SINE|Alu	-68811	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	"trans-2,3-enoyl-CoA reductase-like"	protein-coding
chr8.144124773.-	chr8	144124773	144124774	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4094	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr13.42615523.+	chr13	42615523	42615524	+	0	NA	"intron (NM_001204504, intron 1 of 29)"	CpG	1351	NM_001204504	160851	Hs.733239	NM_001204504	ENSG00000102780	DGKH	DGKeta	"diacylglycerol kinase, eta"	protein-coding
chr9.38829871.+	chr9	38829871	38829872	+	0	NA	Intergenic	AluY|SINE|Alu	208786	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr4.77348133.+	chr4	77348133	77348134	+	0	NA	Intergenic	AluY|SINE|Alu	-8120	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr19.50670021.-	chr19	50670021	50670022	-	0	NA	Intergenic	AluSx|SINE|Alu	3483	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr16.17617312.+	chr16	17617312	17617313	+	0	NA	Intergenic	AluSz|SINE|Alu	-52574	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr3.31574362.-	chr3	31574362	31574363	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	129	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr1.120270210.-	chr1	120270210	120270211	-	0	NA	"intron (NM_006623, intron 5 of 11)"	AluY|SINE|Alu	-15791	NM_006623	26227	Hs.487296	NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA	phosphoglycerate dehydrogenase	protein-coding
chr11.2213971.+	chr11	2213971	2213972	+	0	NA	Intergenic	Intergenic	19678	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr2.159651796.-	chr2	159651796	159651797	-	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	33	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr22.48136489.+	chr22	48136489	48136490	+	0	NA	Intergenic	Intergenic	-109171	NR_033377	400932	Hs.561058	NM_001001693	ENSG00000205634	FLJ46257	-	uncharacterized LOC400932	miscRNA
chr2.87642252.+	chr2	87642252	87642253	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-112722	NR_024204	112597	Hs.652166	NM_052871	ENSG00000222041	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	miscRNA
chr12.112620042.-	chr12	112620042	112620043	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56693	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr12.111369258.+	chr12	111369258	111369259	+	0	NA	Intergenic	Intergenic	-5148	NR_036513	100131138	Hs.152129	NR_036513	ENSG00000185847	LOC100131138	-	uncharacterized LOC100131138	miscRNA
chr18.5524270.+	chr18	5524270	5524271	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19716	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr16.89034096.-	chr16	89034096	89034097	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9408	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.183903187.-	chr2	183903187	183903188	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-42	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr8.145988014.+	chr8	145988014	145988015	+	0	NA	Intergenic	Intergenic	-7044	NM_138367	90987	Hs.534516	NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
chr7.100719587.-	chr7	100719587	100719588	-	0	NA	Intergenic	Intergenic	9199	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr14.23706399.+	chr14	23706399	23706400	+	0	NA	Intergenic	AluSz|SINE|Alu	48910	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr2.192110026.+	chr2	192110026	192110027	+	0	NA	promoter-TSS (NM_012223)	promoter-TSS (NM_012223)	-81	NM_001130158	4430	Hs.439620	NM_001130158	ENSG00000128641	MYO1B	myr1	myosin IB	protein-coding
chr10.135270891.-	chr10	135270891	135270892	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3459	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr9.16748447.+	chr9	16748447	16748448	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	122339	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr7.3828786.-	chr7	3828786	3828787	-	0	NA	"intron (NM_152744, intron 4 of 44)"	"intron (NM_152744, intron 4 of 44)"	340531	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr16.89034212.-	chr16	89034212	89034213	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9292	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr8.98771770.+	chr8	98771770	98771771	+	0	NA	Intergenic	AluSq10|SINE|Alu	-16039	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr11.100596570.-	chr11	100596570	100596571	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38163	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr16.11234065.-	chr16	11234065	11234066	-	0	NA	"intron (NM_015226, intron 21 of 22)"	"intron (NM_015226, intron 21 of 22)"	-115974	NM_003745	8651	Hs.50640	NM_003745	ENSG00000185338	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
chr19.6307832.+	chr19	6307832	6307833	+	0	NA	"intron (NM_133492, intron 4 of 5)"	AluSx|SINE|Alu	25808	NM_133492	125981	Hs.352609	NM_133492		ACER1	ALKCDase1|ASAH3	alkaline ceramidase 1	protein-coding
chr1.27994839.-	chr1	27994839	27994840	-	0	NA	"exon (NM_022872, exon 4 of 5)"	"exon (NM_022872, exon 4 of 5)"	-3885	NM_022872	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr17.42209078.+	chr17	42209078	42209079	+	0	NA	Intergenic	AluSx|SINE|Alu	-8064	NM_005474	10014	Hs.438782	NM_001015053	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
chr9.15428374.+	chr9	15428374	15428375	+	0	NA	"intron (NM_001039697, intron 2 of 8)"	AluY|SINE|Alu	5592	NM_001039697	6619	Hs.546299	NM_003084		SNAPC3	PTFbeta|SNAP50	"small nuclear RNA activating complex, polypeptide 3, 50kDa"	protein-coding
chrX.39680344.-	chrX	39680344	39680345	-	0	NA	Intergenic	CpG	-276375	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr7.95234916.+	chr7	95234916	95234917	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8991	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr7.148597586.+	chr7	148597586	148597587	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16145	NM_001203247	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr15.29089027.-	chr15	29089027	29089028	-	0	NA	"intron (NR_037599, intron 12 of 13)"	"intron (NR_037599, intron 12 of 13)"	-4794	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr4.118368473.+	chr4	118368473	118368474	+	0	NA	Intergenic	AluY|SINE|Alu	-361737	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr1.40953678.+	chr1	40953678	40953679	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10376	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr17.16010349.-	chr17	16010349	16010350	-	0	NA	"intron (NM_001190438, intron 16 of 18)"	AluY|SINE|Alu	-87604	NM_001190440	9611	Hs.462323	NM_001190438	ENSG00000141027	NCOR1	N-CoR|N-CoR1|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
chr16.3755322.+	chr16	3755322	3755323	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12276	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr3.13876347.+	chr3	13876347	13876348	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45271	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr6.34857474.+	chr6	34857474	34857475	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	436	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr4.1626665.+	chr4	1626665	1626666	+	0	NA	Intergenic	CpG	59053	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr6.122006942.+	chr6	122006942	122006943	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250197	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD	"gap junction protein, alpha 1, 43kDa"	protein-coding
chr12.49479731.-	chr12	49479731	49479732	-	0	NA	Intergenic	AluSq|SINE|Alu	-8871	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chr15.100514164.+	chr15	100514164	100514165	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-167032	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr19.27732250.+	chr19	27732250	27732251	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	552598	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr1.200941590.-	chr1	200941590	200941591	-	0	NA	"3' UTR (NM_001252102, exon 35 of 35)"	"3' UTR (NM_001252102, exon 35 of 35)"	-51238	NM_001252103	23046	Hs.169182	NM_001252100	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
chr1.151742032.+	chr1	151742032	151742033	+	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	2901	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr9.92897083.+	chr9	92897083	92897084	+	0	NA	Intergenic	AluY|SINE|Alu	-93302	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr5.31788537.-	chr5	31788537	31788538	-	0	NA	Intergenic	AluY|SINE|Alu	10494	NM_178140	23037	Hs.481819	NM_178140	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
chr12.2858361.-	chr12	2858361	2858362	-	0	NA	Intergenic	L1P3|LINE|L1	-22474	NR_033958	283440	Hs.658536	NR_033958	ENSG00000255669	LOC283440	-	uncharacterized LOC283440	miscRNA
chr19.51189584.+	chr19	51189584	51189585	+	0	NA	"exon (NM_016148, exon 20 of 23)"	"exon (NM_016148, exon 20 of 23)"	30611	NM_016148	50944	Hs.274255	NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
chr9.138065718.-	chr9	138065718	138065719	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7737	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr16.3203704.+	chr16	3203704	3203705	+	0	NA	Intergenic	AluSg|SINE|Alu	18570	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr2.96012320.-	chr2	96012320	96012321	-	0	NA	promoter-TSS (NM_001034914)	promoter-TSS (NM_001034914)	448	NM_001034914	30818	Hs.437376	NM_001034914	ENSG00000115041	KCNIP3	CSEN|DREAM|KCHIP3	"Kv channel interacting protein 3, calsenilin"	protein-coding
chr12.132372570.+	chr12	132372570	132372571	+	0	NA	Intergenic	AluSx|SINE|Alu	-6709	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr19.33776863.+	chr19	33776863	33776864	+	0	NA	Intergenic	AluSq2|SINE|Alu	16567	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chrX.144902997.-	chrX	144902997	144902998	-	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	-131	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr4.177147005.-	chr4	177147005	177147006	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30183	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr1.226271349.+	chr1	226271349	226271350	+	0	NA	Intergenic	CpG	20921	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	"H3 histone, family 3A, pseudogene 4"	pseudo
chr17.4708710.-	chr17	4708710	4708711	-	0	NA	Intergenic	AluSp|SINE|Alu	1686	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr10.35223727.-	chr10	35223727	35223728	-	0	NA	Intergenic	AluSx4|SINE|Alu	119474	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr1.42522876.-	chr1	42522876	42522877	-	0	NA	Intergenic	AluY|SINE|Alu	21280	NR_038261	59269	Hs.648369	NM_001127714	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chr2.120775555.-	chr2	120775555	120775556	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4770	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr22.38531106.+	chr22	38531106	38531107	+	0	NA	"intron (NM_001004426, intron 5 of 15)"	"intron (NM_001004426, intron 5 of 15)"	-24430	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr9.86571461.+	chr9	86571461	86571462	+	0	NA	"5' UTR (NM_032307, exon 1 of 4)"	"5' UTR (NM_032307, exon 1 of 4)"	202	NM_032307	84267	Hs.208914	NM_032307	ENSG00000165118	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
chr4.24801370.-	chr4	24801370	24801371	-	0	NA	"exon (NM_003102, exon 2 of 2)"	"exon (NM_003102, exon 2 of 2)"	-4285	NM_003102	6649	Hs.2420	NM_003102	ENSG00000109610	SOD3	EC-SOD	"superoxide dismutase 3, extracellular"	protein-coding
chr14.23517061.+	chr14	23517061	23517062	+	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	5685	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr2.71559431.-	chr2	71559431	71559432	-	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	-546	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr19.35842607.+	chr19	35842607	35842608	+	0	NA	"exon (NM_005303, exon 1 of 1)"	"exon (NM_005303, exon 1 of 1)"	162	NM_005303	2864	Hs.248127	NM_005303	ENSG00000126266	FFAR1	FFA1R|GPCR40|GPR40	free fatty acid receptor 1	protein-coding
chr6.158438935.-	chr6	158438935	158438936	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-855	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr3.68753643.-	chr3	68753643	68753644	-	0	NA	Intergenic	AluSx3|SINE|Alu	-228118	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr19.27731971.+	chr19	27731971	27731972	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	552877	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr10.33505157.-	chr10	33505157	33505158	-	0	NA	"intron (NR_045259, intron 7 of 15)"	AluY|SINE|Alu	-118676	NM_001244972	8829	Hs.653996	NM_001024628	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
chr19.49964866.+	chr19	49964866	49964867	+	0	NA	"intron (NM_001145396, intron 5 of 15)"	"intron (NM_001145396, intron 5 of 15)"	8393	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr3.27705147.+	chr3	27705147	27705148	+	0	NA	Intergenic	AluSz|SINE|Alu	58638	NM_005442	8320	Hs.591663	NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
chr22.30771666.-	chr22	30771666	30771667	-	0	NA	"non-coding (NR_046312, exon 2 of 2)"	"non-coding (NR_046312, exon 2 of 2)"	-2228	NR_046312	85371	Hs.614837	NR_046312		KIAA1656	-	KIAA1656 protein	miscRNA
chr10.120946131.+	chr10	120946131	120946132	+	0	NA	Intergenic	AluY|SINE|Alu	-7786	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr16.53446765.-	chr16	53446765	53446766	-	0	NA	Intergenic	LTR12D|LTR|ERV1	21586	NM_005611	5934	Hs.513609	NM_005611	ENSG00000103479	RBL2	P130|Rb2	retinoblastoma-like 2 (p130)	protein-coding
chr18.77244876.+	chr18	77244876	77244877	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84550	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr10.95326519.-	chr10	95326519	95326520	-	0	NA	promoter-TSS (NM_001195755)	promoter-TSS (NM_001195755)	-97	NM_001195755	338557	Hs.661022	NM_001195755	ENSG00000186188	FFAR4	BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4	free fatty acid receptor 4	protein-coding
chr20.61885861.+	chr20	61885861	61885862	+	0	NA	promoter-TSS (NM_152864)	promoter-TSS (NM_152864)	31	NM_152864	128414	Hs.46627	NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	Na+/K+ transporting ATPase interacting 4	protein-coding
chr22.31792835.-	chr22	31792835	31792836	-	0	NA	Intergenic	AluJr4|SINE|Alu	2704	NM_004147	4733	Hs.115242	NM_004147	ENSG00000185721	DRG1	NEDD3	developmentally regulated GTP binding protein 1	protein-coding
chr1.54966461.+	chr1	54966461	54966462	+	0	NA	Intergenic	AluSq|SINE|Alu	-47346	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr18.70534388.-	chr18	70534388	70534389	-	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	-422	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr17.5148732.-	chr17	5148732	5148733	-	0	NA	Intergenic	AluSq|SINE|Alu	10577	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr9.121440463.-	chr9	121440463	121440464	-	0	NA	Intergenic	SVA_B|Other|Other	-691276	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr19.1809853.-	chr19	1809853	1809854	-	0	NA	"intron (NR_047593, intron 3 of 28)"	"intron (NR_047593, intron 3 of 28)"	-2383	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr16.12210389.-	chr16	12210389	12210390	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139787	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr19.14096048.+	chr19	14096048	14096049	+	0	NA	"intron (NM_002918, intron 2 of 20)"	AluSz6|SINE|Alu	21086	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chrX.39680356.-	chrX	39680356	39680357	-	0	NA	Intergenic	CpG	-276363	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr12.100804226.+	chr12	100804226	100804227	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53369	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr1.10446784.+	chr1	10446784	10446785	+	0	NA	Intergenic	AluY|SINE|Alu	-12301	NM_002631	5226	Hs.464071	NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
chrX.123466527.-	chrX	123466527	123466528	-	0	NA	Intergenic	Intergenic	13605	NM_002351	4068	Hs.349094	NM_001114937	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD	SH2 domain containing 1A	protein-coding
chr1.80177669.+	chr1	80177669	80177670	+	0	NA	Intergenic	AluSx|SINE|Alu	-705174	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr7.156796977.+	chr7	156796977	156796978	+	0	NA	TTS (NM_005515)	TTS (NM_005515)	5152	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr11.5315861.+	chr11	5315861	5315862	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7315	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr1.203570409.-	chr1	203570409	203570410	-	0	NA	Intergenic	Intergenic	25506	NM_001001396	493	Hs.733333	NM_001001396	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	"ATPase, Ca++ transporting, plasma membrane 4"	protein-coding
chr3.14349518.+	chr3	14349518	14349519	+	0	NA	Intergenic	Intergenic	-94588	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr1.55483768.-	chr1	55483768	55483769	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19151	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr7.155159192.-	chr7	155159192	155159193	-	0	NA	Intergenic	SVA_E|Other|Other	-69706	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr6.158981229.-	chr6	158981229	158981230	-	0	NA	"intron (NM_020823, intron 1 of 16)"	CpG	-23761	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
chr12.132116832.+	chr12	132116832	132116833	+	0	NA	Intergenic	L1ME1|LINE|L1	-78800	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr21.27382886.-	chr21	27382886	27382887	-	0	NA	"intron (NM_001136016, intron 6 of 16)"	AluSx1|SINE|Alu	-129822	NM_001136016	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
chr6.70692602.+	chr6	70692602	70692603	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116154	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr8.103794956.-	chr8	103794956	103794957	-	0	NA	Intergenic	Intergenic	-81441	NM_148174	51582	Hs.459106	NM_015878	ENSG00000155096	AZIN1	OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
chrX.147394145.-	chrX	147394145	147394146	-	0	NA	Intergenic	AluY|SINE|Alu	187994	NM_001169124	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr2.210525395.+	chr2	210525395	210525396	+	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	80992	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr1.40505660.+	chr1	40505660	40505661	+	0	NA	promoter-TSS (NM_006367)	promoter-TSS (NM_006367)	-595	NM_001105530	10487	Hs.713078	NM_001105530	ENSG00000131236	CAP1	CAP|CAP1-PEN	"CAP, adenylate cyclase-associated protein 1 (yeast)"	protein-coding
chr7.2716304.-	chr7	2716304	2716305	-	0	NA	Intergenic	Intergenic	2859	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr13.59346901.-	chr13	59346901	59346902	-	0	NA	Intergenic	AluY|SINE|Alu	-1141112	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr11.5681499.-	chr11	5681499	5681500	-	0	NA	Intergenic	AluSg|SINE|Alu	-24840	NM_033093	85363	Hs.125300	NM_033034	ENSG00000132256	TRIM5	RNF88|TRIM5alpha	tripartite motif containing 5	protein-coding
chr20.48703487.+	chr20	48703487	48703488	+	0	NA	"intron (NM_022442, intron 2 of 3)"	AluY|SINE|Alu	26248	NM_001257399	7335	Hs.420529	NM_001032288	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
chr22.49969168.-	chr22	49969168	49969169	-	0	NA	Intergenic	Intergenic	-82022	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr14.65346217.+	chr14	65346217	65346218	+	0	NA	Intergenic	CpG	-34862	NM_001204064	91612	Hs.731537	NM_001204063	ENSG00000258289	CHURC1	C14orf52|chch	churchill domain containing 1	protein-coding
chr16.31103181.-	chr16	31103181	31103182	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	3051	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr4.8470659.+	chr4	8470659	8470660	+	0	NA	"intron (NM_152544, intron 9 of 10)"	"intron (NM_152544, intron 9 of 10)"	28127	NM_152544	152992	Hs.734761	NM_152544	ENSG00000155275	TRMT44	C4orf23|METTL19|TRM44	tRNA methyltransferase 44 homolog (S. cerevisiae)	protein-coding
chr20.37435760.-	chr20	37435760	37435761	-	0	NA	"intron (NM_001172735, intron 1 of 9)"	"intron (NM_001172735, intron 1 of 9)"	-1412	NM_001172735	26051	Hs.45719	NM_001172735	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	"protein phosphatase 1, regulatory subunit 16B"	protein-coding
chr10.89762192.+	chr10	89762192	89762193	+	0	NA	Intergenic	AluSq2|SINE|Alu	138997	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
chrM.120.+	chrM	120	121	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.924597.-	chr16	924597	924598	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69154	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr17.1389459.-	chr17	1389459	1389460	-	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	408	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr1.168239727.+	chr1	168239727	168239728	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-10551	NM_005149	9095	Hs.716656	NM_005149	ENSG00000143178	TBX19	TBS19|TPIT|dJ747L4.1	T-box 19	protein-coding
chr9.83940578.-	chr9	83940578	83940579	-	0	NA	Intergenic	AluY|SINE|Alu	-363018	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr9.139297648.-	chr9	139297648	139297649	-	0	NA	"intron (NM_006643, intron 8 of 8)"	"intron (NM_006643, intron 8 of 8)"	4759	NM_003086	6621	Hs.113265	NM_003086	ENSG00000165684	SNAPC4	PTFalpha|SNAP190	"small nuclear RNA activating complex, polypeptide 4, 190kDa"	protein-coding
chr5.36855799.-	chr5	36855799	36855800	-	0	NA	Intergenic	AluSx|SINE|Alu	-20997	NR_046262	646719	Hs.355684	NR_046262		LOC646719	-	uncharacterized LOC646719	miscRNA
chr19.267146.+	chr19	267146	267147	+	0	NA	Intergenic	CpG	24023	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr1.32679376.-	chr1	32679376	32679377	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4681	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr9.35728482.+	chr9	35728482	35728483	+	0	NA	"intron (NM_006289, intron 1 of 56)"	"intron (NM_006289, intron 1 of 56)"	-3835	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
chr7.936449.-	chr7	936449	936450	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20258	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr20.39037375.-	chr20	39037375	39037376	-	0	NA	Intergenic	AluYk4|SINE|Alu	-280501	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)	protein-coding
chrX.53111588.-	chrX	53111588	53111589	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-46	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.54839910.-	chr1	54839910	54839911	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32069	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr7.158670998.-	chr7	158670998	158670999	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21729	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chr10.74059507.+	chr10	74059507	74059508	+	0	NA	Intergenic	AluSz6|SINE|Alu	25830	NM_019058	54541	Hs.523012	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
chr6.170055444.-	chr6	170055444	170055445	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46715	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chrX.1379097.+	chrX	1379097	1379098	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8596	NM_172249	1438	Hs.520937	NM_001161529	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	"colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)"	protein-coding
chr14.102109493.-	chr14	102109493	102109494	-	0	NA	Intergenic	AluY|SINE|Alu	-81805	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr10.10769505.+	chr10	10769505	10769506	+	0	NA	Intergenic	AluY|SINE|Alu	67372	NR_027082	207107	Hs.31562	NR_027082		SFTA1P	SFTPF	"surfactant associated 1, pseudogene"	pseudo
chr9.72433071.+	chr9	72433071	72433072	+	0	NA	Intergenic	AluY|SINE|Alu	2584	NR_038833	494558	Hs.130722	NR_038833		LOC494558	-	uncharacterized LOC494558	miscRNA
chr13.66584763.+	chr13	66584763	66584764	+	0	NA	Intergenic	AluY|SINE|Alu	-814538	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr2.207036826.+	chr2	207036826	207036827	+	0	NA	Intergenic	SVA_D|Other|Other	9874	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chrX.132399691.+	chrX	132399691	132399692	+	0	NA	Intergenic	Intergenic	-47315	NM_016521	51270	Hs.142908	NM_016521	ENSG00000183434	TFDP3	CT30|DP4|HCA661	"transcription factor Dp family, member 3"	protein-coding
chr1.23829972.-	chr1	23829972	23829973	-	0	NA	Intergenic	SVA_D|Other|Other	19222	NM_001143778	55616	Hs.437379	NM_001143778	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	"ArfGAP with SH3 domain, ankyrin repeat and PH domain 3"	protein-coding
chr5.19804195.+	chr5	19804195	19804196	+	0	NA	"intron (NM_001167667, intron 3 of 12)"	AluY|SINE|Alu	184158	NM_004934	1016	Hs.317632	NM_001167667	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	"cadherin 18, type 2"	protein-coding
chr22.50655100.+	chr22	50655100	50655101	+	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	15692	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr19.12151146.-	chr19	12151146	12151147	-	0	NA	Intergenic	AluY|SINE|Alu	4621	NM_001080411	163059	Hs.667776	NM_001080411	ENSG00000197647	ZNF433	-	zinc finger protein 433	protein-coding
chr11.120894801.+	chr11	120894801	120894802	+	0	NA	promoter-TSS (NM_152715)	promoter-TSS (NM_152715)	-2	NM_001130047	219899	Hs.504136	NM_001130047		TBCEL	El|LRRC35	tubulin folding cofactor E-like	protein-coding
chr1.3022454.-	chr1	3022454	3022455	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	22085	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr17.16773579.+	chr17	16773579	16773580	+	0	NA	Intergenic	Intergenic	-37432	NR_029392	400578	Hs.723586	NR_029392	ENSG00000227300	KRT16P2	-	keratin 16 pseudogene 2	pseudo
chr20.30291906.-	chr20	30291906	30291907	-	0	NA	"intron (NM_001191, intron 2 of 2)"	"intron (NM_001191, intron 2 of 2)"	-18750	NM_138578	598	Hs.516966	NM_001191	ENSG00000171552	BCL2L1	BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS	BCL2-like 1	protein-coding
chr2.132978666.+	chr2	132978666	132978667	+	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	35987	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr12.79439096.-	chr12	79439096	79439097	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	337	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr11.74107054.-	chr11	74107054	74107055	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2448	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr2.233477524.+	chr2	233477524	233477525	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6757	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr6.118968615.-	chr6	118968615	118968616	-	0	NA	"intron (NM_001178035, intron 2 of 13)"	AluSz|SINE|Alu	-4405	NM_001042475	387119	Hs.656959	NM_001042475	ENSG00000111860	CEP85L	C6orf204|NY-BR-15|bA57K17.2	centrosomal protein 85kDa-like	protein-coding
chr4.163164058.+	chr4	163164058	163164059	+	0	NA	Intergenic	AluY|SINE|Alu	-78872	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr19.8422727.+	chr19	8422727	8422728	+	0	NA	Intergenic	AluY|SINE|Alu	-6284	NM_139314	51129	Hs.9613	NM_001039667	ENSG00000167772	ANGPTL4	ANGPTL2|ARP4|FIAF|HFARP|NL2|PGAR|pp1158	angiopoietin-like 4	protein-coding
chr5.1824183.-	chr5	1824183	1824184	-	0	NA	Intergenic	AluSz6|SINE|Alu	-22687	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	"NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)"	protein-coding
chr1.79749333.+	chr1	79749333	79749334	+	0	NA	Intergenic	AluSx|SINE|Alu	-276838	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr22.19871793.-	chr22	19871793	19871794	-	0	NA	"intron (NM_006440, intron 11 of 17)"	"intron (NM_006440, intron 11 of 17)"	29331	NM_053004	54584	Hs.105642	NM_053004		GNB1L	DGCRK3|GY2|WDR14|WDVCF	"guanine nucleotide binding protein (G protein), beta polypeptide 1-like"	protein-coding
chr7.5275438.+	chr7	5275438	5275439	+	0	NA	Intergenic	AluSg|SINE|Alu	21538	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr7.936472.+	chr7	936472	936473	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20281	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr9.105365797.-	chr9	105365797	105365798	-	0	NA	Intergenic	SVA_B|Other|Other	391796	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr2.38595142.+	chr2	38595142	38595143	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9290	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chrX.69569670.-	chrX	69569670	69569671	-	0	NA	"intron (NM_012310, intron 13 of 30)"	SVA_A|Other|Other	-59791	NM_012310	24137	Hs.648326	NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1	kinesin family member 4A	protein-coding
chr2.207270691.-	chr2	207270691	207270692	-	0	NA	Intergenic	AluY|SINE|Alu	37677	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr11.16894090.+	chr11	16894090	16894091	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133942	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr7.132214501.+	chr7	132214501	132214502	+	0	NA	"intron (NM_181775, intron 2 of 4)"	AluY|SINE|Alu	46822	NM_020911	91584	Hs.511454	NM_001105543	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
chr1.194872542.+	chr1	194872542	194872543	+	0	NA	Intergenic	AluSx|SINE|Alu	1679069	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr2.203027120.+	chr2	203027120	203027121	+	0	NA	"intron (NM_001277372, intron 14 of 21)"	AluSx|SINE|Alu	76202	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr16.69166284.+	chr16	69166284	69166285	+	0	NA	promoter-TSS (NM_001040146)	promoter-TSS (NM_001040146)	209	NR_033227	54921	Hs.85962	NM_001039690	ENSG00000168802	CHTF8	CTF8|DERPC	"CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)"	protein-coding
chr9.136933271.-	chr9	136933271	136933272	-	0	NA	promoter-TSS (NM_007371)	promoter-TSS (NM_007371)	130	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr17.3806749.+	chr17	3806749	3806750	+	0	NA	"intron (NM_002558, intron 6 of 11)"	"intron (NM_002558, intron 6 of 11)"	-10412	NM_032294	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr10.128174267.-	chr10	128174267	128174268	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35743	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr19.1809861.+	chr19	1809861	1809862	+	0	NA	"intron (NR_047593, intron 3 of 28)"	"intron (NR_047593, intron 3 of 28)"	2375	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr19.11463927.+	chr19	11463927	11463928	+	0	NA	"intron (NM_001080503, intron 7 of 10)"	AluSc8|SINE|Alu	-2135	NM_001170635	64748	Hs.6846	NM_001170635	ENSG00000105520	LPPR2	PRG4	lipid phosphate phosphatase-related protein type 2	protein-coding
chr1.54953530.-	chr1	54953530	54953531	-	0	NA	Intergenic	Intergenic	60277	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr17.4708700.-	chr17	4708700	4708701	-	0	NA	Intergenic	AluSp|SINE|Alu	1696	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr18.48643938.-	chr18	48643938	48643939	-	0	NA	Intergenic	SVA_B|Other|Other	-80113	NM_016626	51320	Hs.465144	NM_016626	ENSG00000176624	MEX3C	MEX-3C|RKHD2|RNF194	mex-3 homolog C (C. elegans)	protein-coding
chr6.143381623.-	chr6	143381623	143381624	-	0	NA	promoter-TSS (NM_016108)	promoter-TSS (NM_016108)	400	NM_016108	51390	Hs.567501	NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen-induced 1	protein-coding
chr10.88411555.-	chr10	88411555	88411556	-	0	NA	Intergenic	Intergenic	2759	NM_001030015	94233	Hs.283922	NM_001030015	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
chr8.609557.+	chr8	609557	609558	+	0	NA	Intergenic	Intergenic	71669	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr2.60688061.-	chr2	60688061	60688062	-	0	NA	"exon (NM_022893, exon 4 of 4)"	"exon (NM_022893, exon 4 of 4)"	73481	NR_039631	100616473		NR_039631	ENSG00000266078	MIR4432	-	microRNA 4432	miscRNA
chr19.5245010.-	chr19	5245010	5245011	-	0	NA	"intron (NM_130853, intron 7 of 28)"	AluSx|SINE|Alu	-95804	NM_002850	5802	Hs.644384	NM_002850	ENSG00000105426	PTPRS	PTPSIGMA	"protein tyrosine phosphatase, receptor type, S"	protein-coding
chr22.50959135.-	chr22	50959135	50959136	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4898	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chrX.20694432.-	chrX	20694432	20694433	-	0	NA	Intergenic	AluY|SINE|Alu	409682	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr19.22784377.+	chr19	22784377	22784378	+	0	NA	"non-coding (NR_033899, exon 6 of 10)"	"non-coding (NR_033899, exon 6 of 10)"	5318	NR_033899	440518	Hs.568223	NR_033899	ENSG00000269332	LOC440518	-	golgin A2 pseudogene	pseudo
chr5.174807546.-	chr5	174807546	174807547	-	0	NA	Intergenic	AluY|SINE|Alu	-63617	NM_000794	1812	Hs.2624	NM_000794	ENSG00000184845	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
chr19.54255228.+	chr19	54255228	54255229	+	0	NA	promoter-TSS (NR_030218)	promoter-TSS (NR_030218)	-423	NR_030218	574496		NR_030218	ENSG00000207992	MIR519A1	MIRN519A-1|MIRN519A1	microRNA 519a-1	miscRNA
chr1.3022476.+	chr1	3022476	3022477	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22063	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr15.45256292.+	chr15	45256292	45256293	+	0	NA	"intron (NM_152448, intron 4 of 6)"	AluSc5|SINE|Alu	7392	NM_152448	145645	Hs.567701	NM_152448	ENSG00000167014	C15orf43	-	chromosome 15 open reading frame 43	protein-coding
chr7.1798874.+	chr7	1798874	1798875	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50076	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr16.375230.+	chr16	375230	375231	+	0	NA	"intron (NM_003502, intron 2 of 10)"	CpG	27446	NM_003502	8312	Hs.592082	NM_003502	ENSG00000103126	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
chr12.56394862.-	chr12	56394862	56394863	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3819	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr2.202045949.-	chr2	202045949	202045950	-	0	NA	Intergenic	Intergenic	1672	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chrY.9930619.+	chrY	9930619	9930620	+	0	NA	Intergenic	CpG	182212	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr10.118500981.+	chr10	118500981	118500982	+	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	1104	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr11.31560740.+	chr11	31560740	31560741	+	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	29443	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr20.58244248.+	chr20	58244248	58244249	+	0	NA	"intron (NM_080672, intron 1 of 12)"	MIRb|SINE|MIR	-7468	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr17.77768636.-	chr17	77768636	77768637	-	0	NA	"exon (NM_020649, exon 5 of 5)"	"exon (NM_020649, exon 5 of 5)"	-2279	NM_020649	57332	Hs.387258	NM_020649		CBX8	PC3|RC1	chromobox homolog 8	protein-coding
chr3.99923761.-	chr3	99923761	99923762	-	0	NA	Intergenic	AluSq|SINE|Alu	-19093	NR_028358	644444	Hs.652353	NR_028357	ENSG00000235156	TMEM30C	CDC50C	transmembrane protein 30C	pseudo
chr8.8176087.+	chr8	8176087	8176088	+	0	NA	"exon (NM_001080826, exon 5 of 5)"	"exon (NM_001080826, exon 5 of 5)"	63170	NM_001080826	157285	Hs.657673	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
chr14.23706379.-	chr14	23706379	23706380	-	0	NA	Intergenic	AluSz|SINE|Alu	-48930	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr7.1474646.+	chr7	1474646	1474647	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24463	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr20.32757623.-	chr20	32757623	32757624	-	0	NA	Intergenic	AluSc8|SINE|Alu	57538	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr15.66993604.-	chr15	66993604	66993605	-	0	NA	Intergenic	CpG	1070	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr1.12040326.+	chr1	12040326	12040327	+	0	NA	promoter-TSS (NM_014874)	promoter-TSS (NM_014874)	88	NM_014874	9927	Hs.376681	NM_001127660	ENSG00000116688	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
chr3.124468921.+	chr3	124468921	124468922	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19708	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr12.31575350.+	chr12	31575350	31575351	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96191	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr10.8150561.-	chr10	8150561	8150562	-	0	NA	Intergenic	AluY|SINE|Alu	-53894	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr7.130728744.-	chr7	130728744	130728745	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSp|SINE|Alu	-63045	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr8.144124761.-	chr8	144124761	144124762	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4082	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr3.195928194.+	chr3	195928194	195928195	+	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSx1|SINE|Alu	10106	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr6.34857456.-	chr6	34857456	34857457	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-418	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr20.3190021.-	chr20	3190021	3190022	-	0	NA	promoter-TSS (NM_033453)	promoter-TSS (NM_033453)	-15	NM_033453	3704	Hs.415299	NM_001267623	ENSG00000125877	ITPA	C20orf37|HLC14-06-P|dJ794I6.3	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding
chr1.115078548.-	chr1	115078548	115078549	-	0	NA	Intergenic	Intergenic	24767	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chr1.24513594.+	chr1	24513594	24513595	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	171	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr4.3479581.+	chr4	3479581	3479582	+	0	NA	"intron (NM_173660, intron 4 of 6)"	"intron (NM_173660, intron 4 of 6)"	-6690	NM_001256896	285489	Hs.701584	NM_001164673	ENSG00000175920	DOK7	C4orf25|CMS1B	docking protein 7	protein-coding
chr8.56769399.+	chr8	56769399	56769400	+	0	NA	Intergenic	AluY|SINE|Alu	-22987	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr22.46326800.+	chr22	46326800	46326801	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46208	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chrX.139520312.+	chrX	139520312	139520313	+	0	NA	Intergenic	AluSc|SINE|Alu	66913	NM_005634	6658	Hs.157429	NM_005634	ENSG00000134595	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
chr12.112407383.-	chr12	112407383	112407384	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43640	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr21.45566068.+	chr21	45566068	45566069	+	0	NA	TTS (NM_198155)	TTS (NM_198155)	12574	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr2.170666402.+	chr2	170666402	170666403	+	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	11080	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chrX.86663495.-	chrX	86663495	86663496	-	0	NA	Intergenic	AluSz|SINE|Alu	109220	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chrX.39680388.-	chrX	39680388	39680389	-	0	NA	Intergenic	CpG	-276331	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr1.170388419.+	chr1	170388419	170388420	+	0	NA	Intergenic	SVA_D|Other|Other	-112844	NR_027397	92344	Hs.183702	NM_001146039	ENSG00000120370	GORAB	GO|NTKLBP1|SCYL1BP1	"golgin, RAB6-interacting"	protein-coding
chr14.101679085.-	chr14	101679085	101679086	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142837	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr16.881099.+	chr16	881099	881100	+	0	NA	Intergenic	Intergenic	25656	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr13.25592827.-	chr13	25592827	25592828	-	0	NA	Intergenic	CpG	50220	NR_026730	646405	Hs.620592	NR_026730		TPTE2P1	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudo
chr19.1755437.+	chr19	1755437	1755438	+	0	NA	"intron (NM_001080488, intron 1 of 1)"	CpG	1775	NM_001080488	390874	Hs.654347	NM_001080488		ONECUT3	OC3	one cut homeobox 3	protein-coding
chr17.77198184.+	chr17	77198184	77198185	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	127165	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr4.110600259.-	chr4	110600259	110600260	-	0	NA	"intron (NM_017918, intron 4 of 7)"	SVA_A|Other|Other	-24370	NM_001226	839	Hs.654616	NM_001226	ENSG00000138794	CASP6	MCH2	"caspase 6, apoptosis-related cysteine peptidase"	protein-coding
chrX.19862930.+	chrX	19862930	19862931	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42814	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr16.6394243.+	chr16	6394243	6394244	+	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluSq10|SINE|Alu	325111	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr3.42642386.-	chr3	42642386	42642387	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-186	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr20.13660608.+	chr20	13660608	13660609	+	0	NA	Intergenic	AluY|SINE|Alu	-41025	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr7.127911695.+	chr7	127911695	127911696	+	0	NA	Intergenic	MIR|SINE|MIR	30364	NM_000230	3952	Hs.194236	NM_000230	ENSG00000174697	LEP	LEPD|OB|OBS	leptin	protein-coding
chr14.64035589.+	chr14	64035589	64035590	+	0	NA	Intergenic	AluSx1|SINE|Alu	-25510	NM_006246	5529	Hs.334868	NM_006246		PPP2R5E	-	"protein phosphatase 2, regulatory subunit B', epsilon isoform"	protein-coding
chr6.141000365.-	chr6	141000365	141000366	-	0	NA	Intergenic	AluY|SINE|Alu	4586	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr5.18111524.+	chr5	18111524	18111525	+	0	NA	Intergenic	AluY|SINE|Alu	-724105	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr12.56394833.-	chr12	56394833	56394834	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3790	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr1.171662940.-	chr1	171662940	171662941	-	0	NA	Intergenic	SVA_C|Other|Other	41167	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr19.27731976.+	chr19	27731976	27731977	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	552872	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chrX.152908278.-	chrX	152908278	152908279	-	0	NA	"intron (NM_001395, intron 1 of 3)"	CpG	-381	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr8.29303345.+	chr8	29303345	29303346	+	0	NA	Intergenic	AluSx3|SINE|Alu	-95078	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
chr9.36596634.-	chr9	36596634	36596635	-	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	-23775	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr6.150275513.+	chr6	150275513	150275514	+	0	NA	Intergenic	CpG	-9630	NM_025218	80329	Hs.653255	NM_025218	ENSG00000111981	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
chr2.242500478.-	chr2	242500478	242500479	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1920	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr10.6985546.-	chr10	6985546	6985547	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163986	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr8.67454355.-	chr8	67454355	67454356	-	0	NA	Intergenic	Intergenic	-48864	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr10.32358164.+	chr10	32358164	32358165	+	0	NA	Intergenic	AluSg7|SINE|Alu	-12793	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr6.70692587.+	chr6	70692587	70692588	+	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	116139	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr10.70884077.-	chr10	70884077	70884078	-	0	NA	"intron (NM_004896, intron 1 of 8)"	CpG	-169	NM_001035260	9559	Hs.499925	NM_001035260	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	vacuolar protein sorting 26 homolog A (S. pombe)	protein-coding
chr1.8596088.-	chr1	8596088	8596089	-	0	NA	"intron (NM_001042681, intron 7 of 22)"	AluSc|SINE|Alu	112341	NM_001042682	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr11.77200934.+	chr11	77200934	77200935	+	0	NA	Intergenic	SVA_D|Other|Other	-15826	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr2.232202258.+	chr2	232202258	232202259	+	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	-25161	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr2.236999640.+	chr2	236999640	236999641	+	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	77012	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr4.1626805.+	chr4	1626805	1626806	+	0	NA	Intergenic	CpG	58913	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chrX.137770389.-	chrX	137770389	137770390	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20435	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr3.44743403.-	chr3	44743403	44743404	-	0	NA	Intergenic	AluY|SINE|Alu	10732	NM_001134442	91392	Hs.224843	NM_001134440	ENSG00000196653	ZNF502	-	zinc finger protein 502	protein-coding
chr4.25871851.-	chr4	25871851	25871852	-	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	7241	NM_015187	23231	Hs.479384	NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding
chr3.47530710.+	chr3	47530710	47530711	+	0	NA	Intergenic	AluY|SINE|Alu	-13265	NM_012235	22937	Hs.531789	NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
chr3.42630477.-	chr3	42630477	42630478	-	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	1821	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chrY.8786253.-	chrY	8786253	8786254	-	0	NA	Intergenic	SVA_C|Other|Other	100830	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr11.1529327.+	chr11	1529327	1529328	+	0	NA	"intron (NM_053005, intron 2 of 5)"	"intron (NM_053005, intron 2 of 5)"	-21379	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr10.43563302.-	chr10	43563302	43563303	-	0	NA	Intergenic	Intergenic	9215	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr3.102973920.+	chr3	102973920	102973921	+	0	NA	Intergenic	SVA_D|Other|Other	820061	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr11.62418744.-	chr11	62418744	62418745	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-2030	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr7.155656536.-	chr7	155656536	155656537	-	0	NA	Intergenic	Intergenic	51569	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr7.21498096.-	chr7	21498096	21498097	-	0	NA	"intron (NM_003112, intron 3 of 5)"	AluSx1|SINE|Alu	-30407	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr1.976100.-	chr1	976100	976101	-	0	NA	"exon (NM_198576, exon 4 of 36)"	"exon (NM_198576, exon 4 of 36)"	-20597	NM_198576	375790	Hs.273330	NM_198576	ENSG00000188157	AGRN	-	agrin	protein-coding
chr16.2771099.+	chr16	2771099	2771100	+	0	NA	promoter-TSS (NM_031948)	promoter-TSS (NM_031948)	-547	NM_031948	83886	Hs.332878	NM_031948		PRSS27	CAPH2|MPN	"protease, serine 27"	protein-coding
chr22.43238136.-	chr22	43238136	43238137	-	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	-15272	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr2.202092438.-	chr2	202092438	202092439	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5728	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr11.28078789.+	chr11	28078789	28078790	+	0	NA	TTS (NR_030341)	TTS (NR_030341)	427	NR_030341	693195		NR_030341	ENSG00000207874	MIR610	MIRN610|hsa-mir-610	microRNA 610	miscRNA
chr9.130867506.-	chr9	130867506	130867507	-	0	NA	"intron (NM_001265614, intron 6 of 10)"	AluSx1|SINE|Alu	-6745	NR_049766	114789	Hs.729700	NM_001006641	ENSG00000148339	SLC25A25	MCSC|PCSCL|RP11-395P17.4|SCAMC-2	"solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25"	protein-coding
chr1.57087954.+	chr1	57087954	57087955	+	0	NA	Intergenic	AluSz|SINE|Alu	-23036	NM_006252	5563	Hs.437039	NM_006252	ENSG00000162409	PRKAA2	AMPK|AMPK2|AMPKa2|PRKAA	"protein kinase, AMP-activated, alpha 2 catalytic subunit"	protein-coding
chr2.198058485.+	chr2	198058485	198058486	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117036	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr1.149646744.-	chr1	149646744	149646745	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70291	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr16.4537779.+	chr16	4537779	4537780	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8080	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr3.31573985.-	chr3	31573985	31573986	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	506	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr1.112631816.+	chr1	112631816	112631817	+	0	NA	Intergenic	AluY|SINE|Alu	98626	NM_001270945	643355	Hs.279714	NM_001270945		LOC643355	-	uncharacterized LOC643355	protein-coding
chr17.3317558.+	chr17	3317558	3317559	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6304	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr3.82554758.-	chr3	82554758	82554759	-	0	NA	Intergenic	MER52A|LTR|ERV1	743808	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr5.39649166.+	chr5	39649166	39649167	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223831	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr1.91870236.+	chr1	91870236	91870237	+	0	NA	"intron (NM_001017975, intron 1 of 38)"	CpG	190	NM_001017975	164045	Hs.454818	NM_001017975	ENSG00000162669	HFM1	MER3|RP11-539G11.1|SEC63D1|Si-11|Si-11-6|helicase	"HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)"	protein-coding
chr1.227058412.-	chr1	227058412	227058413	-	0	NA	"intron (NM_000447, intron 1 of 12)"	CpG	-139	NM_000447	5664	Hs.25363	NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
chr8.30590277.+	chr8	30590277	30590278	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4791	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr16.181431.-	chr16	181431	181432	-	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	-7266	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr17.21825599.+	chr17	21825599	21825600	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	229	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr2.121244085.+	chr2	121244085	121244086	+	0	NA	Intergenic	Intergenic	-20160	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr7.12595783.+	chr7	12595783	12595784	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14420	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr19.2432916.+	chr19	2432916	2432917	+	0	NA	"intron (NM_032737, intron 8 of 11)"	CpG	-5041	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr21.32687765.-	chr21	32687765	32687766	-	0	NA	"intron (NM_003253, intron 3 of 28)"	AluY|SINE|Alu	-243525	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr6.65337827.-	chr6	65337827	65337828	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673484	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr7.936491.-	chr7	936491	936492	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20300	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr21.40124155.+	chr21	40124155	40124156	+	0	NA	promoter-TSS (NR_027067)	promoter-TSS (NR_027067)	26	NR_027067	400866	Hs.278704	NR_027065	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	miscRNA
chr2.65087244.+	chr2	65087244	65087245	+	0	NA	Intergenic	Intergenic	72337	NR_036586	400958	Hs.591565	NR_036586		LOC400958	-	uncharacterized LOC400958	miscRNA
chr1.37546485.+	chr1	37546485	37546486	+	0	NA	Intergenic	SVA_D|Other|Other	-46641	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	"glutamate receptor, ionotropic, kainate 3"	protein-coding
chr19.49186354.-	chr19	49186354	49186355	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10090	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr7.100719583.-	chr7	100719583	100719584	-	0	NA	Intergenic	Intergenic	9203	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr14.102050478.-	chr14	102050478	102050479	-	0	NA	Intergenic	Intergenic	-22790	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr11.77200952.-	chr11	77200952	77200953	-	0	NA	Intergenic	SVA_D|Other|Other	15844	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr18.2377812.+	chr18	2377812	2377813	+	0	NA	Intergenic	AluSg7|SINE|Alu	193677	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr2.109985529.-	chr2	109985529	109985530	-	0	NA	"intron (NM_001099289, intron 2 of 9)"	AluSc|SINE|Alu	55448	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	miscRNA
chr4.103422417.-	chr4	103422417	103422418	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	69	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr2.242500481.+	chr2	242500481	242500482	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1923	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr4.155444720.+	chr4	155444720	155444721	+	0	NA	Intergenic	Intergenic	26865	NM_001201564	5356	Hs.249996	NM_001201564	ENSG00000171566	PLRG1	Cwc1|PRL1|PRP46|PRPF46|TANGO4	pleiotropic regulator 1	protein-coding
chr1.10989809.+	chr1	10989809	10989810	+	0	NA	Intergenic	AluSq|SINE|Alu	52285	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chr9.34329784.+	chr9	34329784	34329785	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	280	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr8.41166041.-	chr8	41166041	41166042	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-949	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr16.85590128.+	chr16	85590128	85590129	+	0	NA	Intergenic	CpG	-54901	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr7.99630206.+	chr7	99630206	99630207	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	16987	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr21.45243632.-	chr21	45243632	45243633	-	0	NA	Intergenic	Intergenic	11184	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr10.94608548.-	chr10	94608548	94608549	-	0	NA	"intron (NM_019053, intron 1 of 21)"	CpG	-323	NM_019053	54536	Hs.655657	NM_001013848	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
chr6.168209562.+	chr6	168209562	168209563	+	0	NA	Intergenic	AluSq|SINE|Alu	-12023	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr3.128194308.-	chr3	128194308	128194309	-	0	NA	Intergenic	Intergenic	8217	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr8.144512809.-	chr8	144512809	144512810	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	207	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr19.45852831.+	chr19	45852831	45852832	+	0	NA	"exon (NM_177417, exon 8 of 13)"	"exon (NM_177417, exon 8 of 13)"	8833	NM_177417	147700	Hs.298079	NM_177417	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
chr1.2803363.+	chr1	2803363	2803364	+	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-97133	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr3.9398186.-	chr3	9398186	9398187	-	0	NA	Intergenic	AluY|SINE|Alu	6531	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chrX.103014793.+	chrX	103014793	103014794	+	0	NA	Intergenic	AluY|SINE|Alu	-16646	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr17.21902089.-	chr17	21902089	21902090	-	0	NA	Intergenic	Intergenic	1973	NR_027084	284124	Hs.310247	NR_027084		FLJ36000	-	uncharacterized FLJ36000	miscRNA
chr19.16340187.+	chr19	16340187	16340188	+	0	NA	"intron (NM_032493, intron 9 of 11)"	"intron (NM_032493, intron 9 of 11)"	31522	NM_032493	8907	Hs.71040	NM_001130524	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A	"adaptor-related protein complex 1, mu 1 subunit"	protein-coding
chr1.32679402.+	chr1	32679402	32679403	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4707	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr10.45240287.-	chr10	45240287	45240288	-	0	NA	Intergenic	AluSx1|SINE|Alu	166477	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr10.32239013.+	chr10	32239013	32239014	+	0	NA	Intergenic	AluY|SINE|Alu	-21209	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chrX.133976893.+	chrX	133976893	133976894	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35670	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr19.30963858.-	chr19	30963858	30963859	-	0	NA	"intron (NM_014717, intron 2 of 4)"	AluSx|SINE|Alu	-100530	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
chr2.10952981.-	chr2	10952981	10952982	-	0	NA	promoter-TSS (NM_005742)	promoter-TSS (NM_005742)	21	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr1.6051333.+	chr1	6051333	6051334	+	0	NA	"intron (NM_015102, intron 1 of 29)"	"intron (NM_015102, intron 1 of 29)"	-1025	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr17.4926604.-	chr17	4926604	4926605	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12123	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr8.14882310.-	chr8	14882310	14882311	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171291	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr6.4780640.+	chr6	4780640	4780641	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3960	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr10.35559803.+	chr10	35559803	35559804	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23850	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr20.39037377.-	chr20	39037377	39037378	-	0	NA	Intergenic	AluYk4|SINE|Alu	-280499	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)	protein-coding
chr17.79168850.-	chr17	79168850	79168851	-	0	NA	"intron (NM_014984, intron 16 of 25)"	"intron (NM_014984, intron 16 of 25)"	-27901	NM_001009811	22994	Hs.514578	NM_001009811	ENSG00000141577	AZI1	AZ1|Cep131|ZA1	5-azacytidine induced 1	protein-coding
chr2.17721601.+	chr2	17721601	17721602	+	0	NA	promoter-TSS (NM_003385)	promoter-TSS (NM_003385)	-206	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
chr3.195498019.-	chr3	195498019	195498020	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40825	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr2.240980318.-	chr2	240980318	240980319	-	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	-2081	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr7.100210455.+	chr7	100210455	100210456	+	0	NA	"exon (NM_023948, exon 1 of 5)"	"exon (NM_023948, exon 1 of 5)"	341	NM_023948	64598	Hs.521086	NM_001040097	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
chr19.33776972.-	chr19	33776972	33776973	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16458	NM_004364	1050	Hs.740432	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	"CCAAT/enhancer binding protein (C/EBP), alpha"	protein-coding
chr2.52338210.-	chr2	52338210	52338211	-	0	NA	Intergenic	AluY|SINE|Alu	1078536	NM_001135659	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr11.5315871.-	chr11	5315871	5315872	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7305	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr17.74352086.-	chr17	74352086	74352087	-	0	NA	Intergenic	AluY|SINE|Alu	1856	NM_002766	5635	Hs.77498	NM_002766		PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding
chr6.57322588.+	chr6	57322588	57322589	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140166	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr2.105827781.-	chr2	105827781	105827782	-	0	NA	Intergenic	SVA_E|Other|Other	30419	NM_007227	11250	Hs.590903	NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
chr2.92172365.-	chr2	92172365	92172366	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-43206	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr6.1610259.+	chr6	1610259	1610260	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-422	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr13.21872289.-	chr13	21872289	21872290	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-25	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr2.122878825.+	chr2	122878825	122878826	+	0	NA	Intergenic	AluY|SINE|Alu	365704	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr8.123899483.-	chr8	123899483	123899484	-	0	NA	"intron (NM_014943, intron 2 of 3)"	AluSx1|SINE|Alu	-105582	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr9.36859995.+	chr9	36859995	36859996	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4310	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr9.28773114.+	chr9	28773114	28773115	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluY|SINE|Alu	-53811	NM_152570	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr2.54494022.+	chr2	54494022	54494023	+	0	NA	"intron (NM_138448, intron 3 of 3)"	AluY|SINE|Alu	-10613	NM_001003937	388951	Hs.620508	NM_001003937	ENSG00000178021	TSPYL6	-	TSPY-like 6	protein-coding
chr4.5892148.-	chr4	5892148	5892149	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1833	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr3.195498018.+	chr3	195498018	195498019	+	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	40826	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr6.121079719.-	chr6	121079719	121079720	-	0	NA	Intergenic	AluY|SINE|Alu	-575925	NM_152730	221322	Hs.121396	NM_152730	ENSG00000146350	C6orf170	BROMI|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	chromosome 6 open reading frame 170	protein-coding
chr12.112161116.-	chr12	112161116	112161117	-	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	-37259	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr2.4156477.-	chr2	4156477	4156478	-	0	NA	Intergenic	Intergenic	134855	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr17.1634071.+	chr17	1634071	1634072	+	0	NA	"exon (NM_001163673, exon 3 of 10)"	"exon (NM_001163673, exon 3 of 10)"	5946	NM_001163809	124997	Hs.234572	NM_001163673	ENSG00000167716	WDR81	CAMRQ2	WD repeat domain 81	protein-coding
chr5.43563183.+	chr5	43563183	43563184	+	0	NA	Intergenic	AluSg|SINE|Alu	-5662	NM_183323	10605	Hs.482038	NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding
chr22.38510759.-	chr22	38510759	38510760	-	0	NA	"intron (NM_001004426, intron 13 of 15)"	"intron (NM_001004426, intron 13 of 15)"	4083	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chrM.161.-	chrM	161	162	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr14.55349988.-	chr14	55349988	55349989	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5077	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr7.532156.-	chr7	532156	532157	-	0	NA	Intergenic	Intergenic	-27325	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr10.28821901.+	chr10	28821901	28821902	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	479	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr15.74753615.-	chr15	74753615	74753616	-	0	NA	promoter-TSS (NM_201265)	promoter-TSS (NM_201265)	-9	NR_038448	440288	Hs.707910	NR_038448	ENSG00000247240	LOC440288	-	uncharacterized LOC440288	miscRNA
chr7.2352691.-	chr7	2352691	2352692	-	0	NA	"intron (NM_013321, intron 1 of 10)"	AluY|SINE|Alu	-1408	NM_013321	29886	Hs.584900	NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
chr17.78559333.-	chr17	78559333	78559334	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40708	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr5.57859400.-	chr5	57859400	57859401	-	0	NA	Intergenic	SVA_A|Other|Other	19539	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr2.73144563.+	chr2	73144563	73144564	+	0	NA	promoter-TSS (NM_004097)	promoter-TSS (NM_004097)	-41	NM_004097	2016	Hs.516090	NM_001040404	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
chr16.70148612.-	chr16	70148612	70148613	-	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	-1083	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr16.1127312.-	chr16	1127312	1127313	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-1419	NR_027242	146336	Hs.250557	NR_027242	ENSG00000261713	SSTR5-AS1	-	SSTR5 antisense RNA 1	miscRNA
chr6.41732911.+	chr6	41732911	41732912	+	0	NA	Intergenic	AluSx1|SINE|Alu	14719	NM_006653	10817	Hs.194208	NM_006653	ENSG00000137218	FRS3	FRS2B|FRS2beta|SNT-2|SNT2	fibroblast growth factor receptor substrate 3	protein-coding
chr3.188566643.-	chr3	188566643	188566644	-	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	323120	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr9.127626609.-	chr9	127626609	127626610	-	0	NA	Intergenic	AluSx|SINE|Alu	2369	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr15.92290039.-	chr15	92290039	92290040	-	0	NA	Intergenic	AluY|SINE|Alu	106899	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr9.7934829.-	chr9	7934829	7934830	-	0	NA	Intergenic	AluY|SINE|Alu	135030	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr7.16632901.+	chr7	16632901	16632902	+	0	NA	Intergenic	AluJb|SINE|Alu	52541	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr20.45039748.+	chr20	45039748	45039749	+	0	NA	Intergenic	Intergenic	-4477	NM_133171	63916	Hs.210469	NM_133171	ENSG00000062598	ELMO2	CED-12|CED12|ELMO-2	engulfment and cell motility 2	protein-coding
chr7.1286194.-	chr7	1286194	1286195	-	0	NA	Intergenic	CpG	-13540	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr12.110276562.-	chr12	110276562	110276563	-	0	NA	Intergenic	AluSg|SINE|Alu	5350	NM_021625	59341	Hs.506713	NM_001177428	ENSG00000111199	TRPV4	CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC	"transient receptor potential cation channel, subfamily V, member 4"	protein-coding
chr12.112161130.+	chr12	112161130	112161131	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37273	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr12.132116862.-	chr12	132116862	132116863	-	0	NA	Intergenic	L1ME1|LINE|L1	78770	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr15.32298461.-	chr15	32298461	32298462	-	0	NA	Intergenic	AluY|SINE|Alu	24225	NM_000746	1139	Hs.713151	XM_003960575		CHRNA7	CHRNA7-2|NACHRA7	"cholinergic receptor, nicotinic, alpha 7 (neuronal)"	protein-coding
chr14.23517086.-	chr14	23517086	23517087	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5710	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr3.128151473.-	chr3	128151473	128151474	-	0	NA	Intergenic	Intergenic	30964	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr10.134216428.+	chr10	134216428	134216429	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5726	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr7.73456641.+	chr7	73456641	73456642	+	0	NA	"intron (NM_001081753, intron 5 of 30)"	AluJb|SINE|Alu	14214	NM_001081755	2006	Hs.647061	NM_000501	ENSG00000049540	ELN	SVAS|WBS|WS	elastin	protein-coding
chr5.10577292.-	chr5	10577292	10577293	-	0	NA	"intron (NM_001164440, intron 1 of 3)"	AluSq2|SINE|Alu	-12857	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chr21.22013090.-	chr21	22013090	22013091	-	0	NA	Intergenic	AluY|SINE|Alu	-162336	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	miscRNA
chr8.54998372.-	chr8	54998372	54998373	-	0	NA	"intron (NM_006330, intron 2 of 8)"	SVA_B|Other|Other	-16205	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|LPL1|LYSOPLA|hAPT1	lysophospholipase I	protein-coding
chr1.154218150.-	chr1	154218150	154218151	-	0	NA	"intron (NM_001127320, intron 10 of 24)"	AluY|SINE|Alu	-24825	NM_014847	9898	Hs.490551	NM_001127320	ENSG00000143569	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
chr17.47363939.-	chr17	47363939	47363940	-	0	NA	Intergenic	AluSx|SINE|Alu	-38334	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr2.108084995.-	chr2	108084995	108084996	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-357588	NR_024439	729121	Hs.386155	XR_159390	ENSG00000230651	LOC729121	-	uncharacterized LOC729121	miscRNA
chr16.1027385.-	chr16	1027385	1027386	-	0	NA	"intron (NR_036442, intron 3 of 3)"	"intron (NR_036442, intron 3 of 3)"	-3933	NR_033645	64788	Hs.732776	NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
chr17.18785144.-	chr17	18785144	18785145	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluJb|SINE|Alu	-16362	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr6.53310831.+	chr6	53310831	53310832	+	0	NA	Intergenic	Intergenic	-96854	NM_001242828	60481	Hs.743970	NM_001242828	ENSG00000012660	ELOVL5	HELO1|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
chr12.56394847.-	chr12	56394847	56394848	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3804	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr2.137165822.+	chr2	137165822	137165823	+	0	NA	Intergenic	Intergenic	-290097	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chrX.53930560.+	chrX	53930560	53930561	+	0	NA	Intergenic	AluSq2|SINE|Alu	139067	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr11.69351332.+	chr11	69351332	69351333	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-104541	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr1.242294482.+	chr1	242294482	242294483	+	0	NA	"intron (NM_152666, intron 6 of 10)"	AluSc|SINE|Alu	-132097	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr16.30079544.+	chr16	30079544	30079545	+	0	NA	"intron (NM_001127617, intron 3 of 8)"	AluY|SINE|Alu	2550	NM_001243177	226	Hs.732822	NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12	"aldolase A, fructose-bisphosphate"	protein-coding
chr17.41382398.+	chr17	41382398	41382399	+	0	NA	Intergenic	AluSx|SINE|Alu	-1336	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	miscRNA
chr8.42722585.+	chr8	42722585	42722586	+	0	NA	"intron (NM_001160224, intron 4 of 5)"	AluSp|SINE|Alu	-24111	NM_199003	55145	Hs.7432	NM_018105	ENSG00000131931	THAP1	DYT6	"THAP domain containing, apoptosis associated protein 1"	protein-coding
chr19.34394391.-	chr19	34394391	34394392	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106640	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr22.50638712.-	chr22	50638712	50638713	-	0	NA	promoter-TSS (NM_031454)	promoter-TSS (NM_031454)	696	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chr5.41712432.+	chr5	41712432	41712433	+	0	NA	Intergenic	AluY|SINE|Alu	158359	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA transferase 1	protein-coding
chr2.240402063.+	chr2	240402063	240402064	+	0	NA	Intergenic	Intergenic	-79420	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr8.61193871.-	chr8	61193871	61193872	-	0	NA	promoter-TSS (NM_004056)	promoter-TSS (NM_004056)	-83	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr19.7123249.+	chr19	7123249	7123250	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53778	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr22.42978017.+	chr22	42978017	42978018	+	0	NA	promoter-TSS (NR_002184)	promoter-TSS (NR_002184)	0	NR_002184	91695	Hs.534041	NR_002184	ENSG00000182841	RRP7B	dJ222E13.2	ribosomal RNA processing 7 homolog B (S. cerevisiae)	pseudo
chr2.120775599.+	chr2	120775599	120775600	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4814	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr9.120507376.+	chr9	120507376	120507377	+	0	NA	Intergenic	CpG	40923	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr19.586975.+	chr19	586975	586976	+	0	NA	Intergenic	L2b|LINE|L2	-2918	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr2.1554781.+	chr2	1554781	1554782	+	0	NA	Intergenic	Intergenic	136601	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr19.47628012.-	chr19	47628012	47628013	-	0	NA	Intergenic	AluY|SINE|Alu	6068	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr17.61934452.+	chr17	61934452	61934453	+	0	NA	promoter-TSS (NR_002947)	promoter-TSS (NR_002947)	76	NR_002947	146771	Hs.629177	NR_002947	ENSG00000240280	TCAM1P	TCAM1	"testicular cell adhesion molecule 1, pseudogene"	pseudo
chr11.615930.+	chr11	615930	615931	+	0	NA	promoter-TSS (NM_001572)	promoter-TSS (NM_001572)	69	NM_004029	3665	Hs.166120	NM_001572	ENSG00000185507	IRF7	IRF-7H|IRF7A	interferon regulatory factor 7	protein-coding
chr14.57275186.+	chr14	57275186	57275187	+	0	NA	"intron (NM_001270524, intron 1 of 3)"	CpG	2008	NM_001270523	5015	Hs.741558	NM_001270523	ENSG00000165588	OTX2	CPHD6|MCOPS5	orthodenticle homeobox 2	protein-coding
chr9.139119890.+	chr9	139119890	139119891	+	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	17797	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr3.36421957.-	chr3	36421957	36421958	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	140	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr7.100877590.+	chr7	100877590	100877591	+	0	NA	"exon (NM_001185080, exon 3 of 6)"	"exon (NM_001185080, exon 3 of 6)"	3637	NM_014343	24146	Hs.38738	NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
chr10.102499240.+	chr10	102499240	102499241	+	0	NA	Intergenic	CpG	-6228	NM_003988	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	PAPRS	paired box 2	protein-coding
chr22.51010952.+	chr22	51010952	51010953	+	0	NA	"intron (NM_152246, intron 11 of 19)"	AluSx1|SINE|Alu	5554	NM_001145137	1375	Hs.609867	NM_001145134	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B (muscle)	protein-coding
chr21.11106996.+	chr21	11106996	11106997	+	0	NA	Intergenic	CpG	-8059	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr7.56109511.-	chr7	56109511	56109512	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9757	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr1.110766403.+	chr1	110766403	110766404	+	0	NA	"exon (NM_004978, exon 2 of 4)"	"exon (NM_004978, exon 2 of 4)"	13067	NM_004978	3749	Hs.153521	NM_001039574	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	"potassium voltage-gated channel, Shaw-related subfamily, member 4"	protein-coding
chr7.139118449.+	chr7	139118449	139118450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6177	NR_033999	100129148	Hs.744449	NR_033999		LOC100129148	-	uncharacterized LOC100129148	miscRNA
chr17.4422234.-	chr17	4422234	4422235	-	0	NA	"intron (NM_001124758, intron 2 of 12)"	"intron (NM_001124758, intron 2 of 12)"	-20105	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
chr6.66681567.-	chr6	66681567	66681568	-	0	NA	Intergenic	L1PA3|LINE|L1	-183795	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	"solute carrier family 25, member 51 pseudogene 1"	pseudo
chr10.125228157.+	chr10	125228157	125228158	+	0	NA	Intergenic	AluY|SINE|Alu	-197714	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chr19.18180422.-	chr19	18180422	18180423	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17275	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr12.104653863.+	chr12	104653863	104653864	+	0	NA	"intron (NM_001093771, intron 3 of 16)"	AluSp|SINE|Alu	-26597	NM_182742	7296	Hs.654922	NM_001093771	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding
chr20.52741091.+	chr20	52741091	52741092	+	0	NA	Intergenic	AluSx1|SINE|Alu	49425	NM_000782	1591	Hs.89663	NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|P450-CC24	"cytochrome P450, family 24, subfamily A, polypeptide 1"	protein-coding
chr22.46565277.+	chr22	46565277	46565278	+	0	NA	"intron (NM_001001928, intron 2 of 7)"	AluY|SINE|Alu	18778	NM_001001928	5465	Hs.710044	NM_001001928	ENSG00000186951	PPARA	NR1C1|PPAR|PPARalpha|hPPAR	peroxisome proliferator-activated receptor alpha	protein-coding
chr19.39887082.-	chr19	39887082	39887083	-	0	NA	"intron (NM_017592, intron 3 of 3)"	AluSg|SINE|Alu	-5119	NM_017592	55588	Hs.611541	NM_017592	ENSG00000063322	MED29	IXL	mediator complex subunit 29	protein-coding
chr5.693630.+	chr5	693630	693631	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-120	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr7.158284925.-	chr7	158284925	158284926	-	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	-40580	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr17.38497847.+	chr17	38497847	38497848	+	0	NA	promoter-TSS (NM_001024809)	promoter-TSS (NM_001024809)	-424	NM_001024809	5914	Hs.654583	NM_000964		RARA	NR1B1|RAR	"retinoic acid receptor, alpha"	protein-coding
chr4.1358111.-	chr4	1358111	1358112	-	0	NA	"intron (NM_020894, intron 7 of 13)"	"intron (NM_020894, intron 7 of 13)"	-17007	NM_020894	57654	Hs.380475	NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
chr19.15719746.-	chr19	15719746	15719747	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6283	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr5.178157706.-	chr5	178157706	178157707	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	3	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr2.231712513.+	chr2	231712513	231712514	+	0	NA	Intergenic	AluSz|SINE|Alu	-17108	NM_001012514	81618	Hs.111577	NM_001012514	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
chr19.1252538.-	chr19	1252538	1252539	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-3986	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr1.6471028.+	chr1	6471028	6471029	+	0	NA	Intergenic	Intergenic	8951	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr9.34070266.+	chr9	34070266	34070267	+	0	NA	Intergenic	AluSz|SINE|Alu	-21319	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr17.4488398.-	chr17	4488398	4488399	-	0	NA	"intron (NM_001114974, intron 1 of 7)"	CpG	-564	NM_001114974	342527	Hs.441709	NM_001114974	ENSG00000188176	SMTNL2	-	smoothelin-like 2	protein-coding
chr5.18111526.-	chr5	18111526	18111527	-	0	NA	Intergenic	AluY|SINE|Alu	724107	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr16.31932510.+	chr16	31932510	31932511	+	0	NA	Intergenic	AluY|SINE|Alu	47431	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr1.11526664.+	chr1	11526664	11526665	+	0	NA	Intergenic	Intergenic	-12631	NM_020780	57540	Hs.202355	NM_020780	ENSG00000204624	PTCHD2	DISP3	patched domain containing 2	protein-coding
chr9.719225.-	chr9	719225	719226	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12419	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr9.34070279.+	chr9	34070279	34070280	+	0	NA	Intergenic	AluSz|SINE|Alu	-21332	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr7.6454043.+	chr7	6454043	6454044	+	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	33600	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr20.62479304.+	chr20	62479304	62479305	+	0	NA	Intergenic	Intergenic	-13262	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr1.9673110.-	chr1	9673110	9673111	-	0	NA	"exon (NM_001130924, exon 11 of 11)"	"exon (NM_001130924, exon 11 of 11)"	-24178	NM_001010866	199953	Hs.706017	NM_001010866	ENSG00000188807	TMEM201	NET5	transmembrane protein 201	protein-coding
chr2.139679543.+	chr2	139679543	139679544	+	0	NA	Intergenic	AluSc|SINE|Alu	24649	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
chr3.71790141.-	chr3	71790141	71790142	-	0	NA	"intron (NM_173359, intron 1 of 7)"	AluSc8|SINE|Alu	11872	NM_001134650	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr2.38825123.-	chr2	38825123	38825124	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5055	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr1.11960057.+	chr1	11960057	11960058	+	0	NA	Intergenic	AluSc8|SINE|Alu	26428	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
chr9.138596732.+	chr9	138596732	138596733	+	0	NA	"intron (NM_001272003, intron 1 of 30)"	"intron (NM_001272003, intron 1 of 30)"	2701	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr4.83439461.+	chr4	83439461	83439462	+	0	NA	"intron (NM_001080506, intron 1 of 7)"	AluSx1|SINE|Alu	43665	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	-	transmembrane protein 150C	protein-coding
chr8.143165015.+	chr8	143165015	143165016	+	0	NA	Intergenic	Intergenic	-92685	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr11.638953.-	chr11	638953	638954	-	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	-1648	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr2.905794.+	chr2	905794	905795	+	0	NA	Intergenic	Intergenic	-40760	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chrX.106914065.+	chrX	106914065	106914066	+	0	NA	Intergenic	AluSz|SINE|Alu	42411	NM_002764	5631	Hs.56	NM_001204402	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
chr2.208475920.+	chr2	208475920	208475921	+	0	NA	"3' UTR (NM_145280, exon 4 of 4)"	"3' UTR (NM_145280, exon 4 of 4)"	13776	NM_145280	151194	Hs.664764	NM_001127395	ENSG00000144401	METTL21A	FAM119A|HCA557b	methyltransferase like 21A	protein-coding
chr6.126100196.-	chr6	126100196	126100197	-	0	NA	Intergenic	AluY|SINE|Alu	2111	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr22.39040977.-	chr22	39040977	39040978	-	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	-11657	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr10.44364703.+	chr10	44364703	44364704	+	0	NA	"intron (NR_038268, intron 3 of 4)"	"intron (NR_038268, intron 3 of 4)"	9844	NR_038268	100506835	Hs.462615	NR_038268	ENSG00000226808	LINC00840	-	long intergenic non-protein coding RNA 840	miscRNA
chr1.158012610.+	chr1	158012610	158012611	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49547	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr5.3596767.+	chr5	3596767	3596768	+	0	NA	"intron (NM_024337, intron 1 of 3)"	CpG-20542	599	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr2.18277696.-	chr2	18277696	18277697	-	0	NA	Intergenic	AluY|SINE|Alu	-217751	NM_002252	3790	Hs.414489	NM_002252	ENSG00000170745	KCNS3	KV9.3	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3"	protein-coding
chr3.32863299.-	chr3	32863299	32863300	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3789	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr7.155589839.+	chr7	155589839	155589840	+	0	NA	Intergenic	CpG	15128	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr1.5005151.+	chr1	5005151	5005152	+	0	NA	Intergenic	Intergenic	290046	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr19.42490036.-	chr19	42490036	42490037	-	0	NA	"exon (NM_001256213, exon 6 of 23)"	"exon (NM_001256213, exon 6 of 23)"	-7583	NM_001256213	478	Hs.515427	NM_001256213	ENSG00000105409	ATP1A3	AHC2|DYT12|RDP	"ATPase, Na+/K+ transporting, alpha 3 polypeptide"	protein-coding
chr8.91013869.+	chr8	91013869	91013870	+	0	NA	"intron (NM_001359, intron 1 of 9)"	CpG	289	NM_001359	1666	Hs.492212	NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	"2,4-dienoyl CoA reductase 1, mitochondrial"	protein-coding
chr1.9832329.+	chr1	9832329	9832330	+	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	52221	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr19.41770983.+	chr19	41770983	41770984	+	0	NA	"intron (NM_007040, intron 1 of 14)"	CpG	863	NM_007040	11100	Hs.718642	NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding
chr9.124262084.+	chr9	124262084	124262085	+	0	NA	"non-coding (NR_003191, exon 1 of 7)"	"non-coding (NR_003191, exon 1 of 7)"	222	NR_045211	2681	Hs.97469	NR_003191	ENSG00000204136	GGTA1P	GGTA|GGTA1|GLYT2|a1/3GTP	"glycoprotein, alpha-galactosyltransferase 1 pseudogene"	pseudo
chr16.71647924.-	chr16	71647924	71647925	-	0	NA	Intergenic	AluSz|SINE|Alu	12132	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr9.6559761.+	chr9	6559761	6559762	+	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	85931	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr14.73651089.-	chr14	73651089	73651090	-	0	NA	"intron (NM_000021, intron 5 of 11)"	SVA_F|Other|Other	-47946	NM_007318	5663	Hs.3260	NM_000021	ENSG00000080815	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
chr1.54010027.+	chr1	54010027	54010028	+	0	NA	"intron (NM_147193, intron 3 of 9)"	"intron (NM_147193, intron 3 of 9)"	84955	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	"DMRT-like family B with proline-rich C-terminal, 1"	protein-coding
chr2.70416492.+	chr2	70416492	70416493	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	1659	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chrX.39680327.-	chrX	39680327	39680328	-	0	NA	Intergenic	CpG	-276392	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr10.12344445.-	chr10	12344445	12344446	-	0	NA	Intergenic	AluSc8|SINE|Alu	47138	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr15.63892665.+	chr15	63892665	63892666	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	361	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr9.138663341.-	chr9	138663341	138663342	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69310	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr12.133328255.-	chr12	133328255	133328256	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10196	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr20.34266418.-	chr20	34266418	34266419	-	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	13540	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr17.1226040.+	chr17	1226040	1226041	+	0	NA	Intergenic	Intergenic	43083	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr1.31648946.+	chr1	31648946	31648947	+	0	NA	Intergenic	SVA_D|Other|Other	63788	NM_024522	79570	Hs.470259	NM_024522	ENSG00000084628	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
chr16.30810949.+	chr16	30810949	30810950	+	0	NA	Intergenic	AluSx|SINE|Alu	-12426	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chrX.153150944.+	chrX	153150944	153150945	+	0	NA	Intergenic	Intergenic	-9545	NM_001143963	3897	Hs.522818	NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
chr1.226350790.-	chr1	226350790	226350791	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23633	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr15.48696415.+	chr15	48696415	48696416	+	0	NA	Intergenic	AluYk4|SINE|Alu	72050	NM_001948	1854	Hs.527980	NM_001025248	ENSG00000128951	DUT	dUTPase	deoxyuridine triphosphatase	protein-coding
chr3.47411290.-	chr3	47411290	47411291	-	0	NA	Intergenic	AluSq|SINE|Alu	11201	NM_015466	25930	Hs.25524	NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|PTP-TD14	"protein tyrosine phosphatase, non-receptor type 23"	protein-coding
chr1.247465250.+	chr1	247465250	247465251	+	0	NA	"intron (NM_032752, intron 8 of 8)"	"intron (NM_032752, intron 8 of 8)"	29795	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr13.99373171.-	chr13	99373171	99373172	-	0	NA	"intron (NM_005073, intron 7 of 22)"	AluSc8|SINE|Alu	-31758	NM_005073	6564	Hs.436893	NM_005073		SLC15A1	HPECT1|HPEPT1|PEPT1	"solute carrier family 15 (oligopeptide transporter), member 1"	protein-coding
chr1.102896254.+	chr1	102896254	102896255	+	0	NA	Intergenic	AluY|SINE|Alu	-433464	NM_058170	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|NOELIN3_V1|NOELIN3_V2|NOELIN3_V3|NOELIN3_V4|NOELIN3_V5|NOELIN3_V6|OPTIMEDIN	olfactomedin 3	protein-coding
chr8.56758445.-	chr8	56758445	56758446	-	0	NA	Intergenic	AluSx|SINE|Alu	33941	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr19.36246473.-	chr19	36246473	36246474	-	0	NA	"exon (NM_144617, exon 3 of 3)"	"exon (NM_144617, exon 3 of 3)"	-1457	NM_144617	126393	Hs.744178	NM_144617	ENSG00000004776	HSPB6	Hsp20	"heat shock protein, alpha-crystallin-related, B6"	protein-coding
chr7.821270.+	chr7	821270	821271	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33924	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr13.103088602.-	chr13	103088602	103088603	-	0	NA	Intergenic	AluY|SINE|Alu	34478	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr8.7414145.+	chr8	7414145	7414146	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2481	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr9.76965998.+	chr9	76965998	76965999	+	0	NA	Intergenic	AluSp|SINE|Alu	-146254	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chrX.22158725.-	chrX	22158725	22158726	-	0	NA	"intron (NM_000444, intron 12 of 21)"	AluSz6|SINE|Alu	-32375	NR_046639	100873942	Hs.633194	NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	miscRNA
chr19.46763722.+	chr19	46763722	46763723	+	0	NA	"intron (NR_046936, intron 3 of 3)"	"intron (NR_046936, intron 3 of 3)"	30713	NM_198541	374918	Hs.546554	NM_198541	ENSG00000188293	IGFL1	APRG644|UNQ644	IGF-like family member 1	protein-coding
chr5.172599830.-	chr5	172599830	172599831	-	0	NA	Intergenic	AluSc8|SINE|Alu	-28385	NM_013979	662	Hs.145726	NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2/adenovirus E1B 19kDa interacting protein 1	protein-coding
chr19.35532573.-	chr19	35532573	35532574	-	0	NA	"intron (NM_002151, intron 1 of 13)"	"intron (NM_002151, intron 1 of 13)"	-1163	NM_182983	3249	Hs.182385	NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
chr19.51143328.-	chr19	51143328	51143329	-	0	NA	promoter-TSS (NM_001160329)	promoter-TSS (NM_001160329)	236	NM_001160329	84258	Hs.515554	NM_001160328	ENSG00000213023	SYT3	SytIII	synaptotagmin III	protein-coding
chr3.49047732.-	chr3	49047732	49047733	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3095	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr8.141030080.+	chr8	141030080	141030081	+	0	NA	"intron (NM_031466, intron 18 of 22)"	AluJr4|SINE|Alu	-314781	NM_016601	51305	Hs.493037	NM_016601	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	"potassium channel, subfamily K, member 9"	protein-coding
chr10.134034486.-	chr10	134034486	134034487	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34072	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr3.128194213.+	chr3	128194213	128194214	+	0	NA	Intergenic	Intergenic	-8122	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr5.170687205.+	chr5	170687205	170687206	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49083	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr2.239047562.-	chr2	239047562	239047563	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-199	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr15.76627354.+	chr15	76627354	76627355	+	0	NA	Intergenic	AluSg|SINE|Alu	-1793	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr4.183981830.-	chr4	183981830	183981831	-	0	NA	Intergenic	AluJb|SINE|Alu	-23012	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	"family with sequence similarity 92, member A3"	pseudo
chr5.176292820.+	chr5	176292820	176292821	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33513	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr7.4153938.+	chr7	4153938	4153939	+	0	NA	"intron (NM_152744, intron 25 of 44)"	"intron (NM_152744, intron 25 of 44)"	-15379	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr12.51681494.+	chr12	51681494	51681495	+	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	-17292	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chr7.53587030.+	chr7	53587030	53587031	+	0	NA	Intergenic	AluY|SINE|Alu	292594	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr21.44478107.+	chr21	44478107	44478108	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17933	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr2.27526316.-	chr2	27526316	27526317	-	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	-4814	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr4.55034895.-	chr4	55034895	55034896	-	0	NA	Intergenic	AluSx3|SINE|Alu	60369	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr2.71561990.-	chr2	71561990	71561991	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3105	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr6.105414639.+	chr6	105414639	105414640	+	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	9716	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr1.6471031.+	chr1	6471031	6471032	+	0	NA	Intergenic	Intergenic	8948	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr9.133922860.+	chr9	133922860	133922861	+	0	NA	"intron (NM_006059, intron 8 of 27)"	Charlie1b|DNA|hAT-Charlie	38356	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	"laminin, gamma 3"	protein-coding
chr2.1563087.-	chr2	1563087	1563088	-	0	NA	Intergenic	Intergenic	-144907	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr5.86548502.+	chr5	86548502	86548503	+	0	NA	Intergenic	AluSc8|SINE|Alu	-15568	NM_002890	5921	Hs.664080	NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP	RAS p21 protein activator (GTPase activating protein) 1	protein-coding
chr2.122878832.-	chr2	122878832	122878833	-	0	NA	Intergenic	AluY|SINE|Alu	-365711	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr20.39657614.-	chr20	39657614	39657615	-	0	NA	"5' UTR (NM_003286, exon 1 of 21)"	"5' UTR (NM_003286, exon 1 of 21)"	-152	NM_003286	7150	Hs.472737	NM_003286	ENSG00000198900	TOP1	TOPI	topoisomerase (DNA) I	protein-coding
chr10.59080716.+	chr10	59080716	59080717	+	0	NA	Intergenic	AluY|SINE|Alu	-16397	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr20.48802908.-	chr20	48802908	48802909	-	0	NA	Intergenic	Intergenic	4212	NM_005194	1051	Hs.720603	NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|CRP2|IL6DBP|LAP|NF-IL6|TCF5	"CCAAT/enhancer binding protein (C/EBP), beta"	protein-coding
chr19.13497367.-	chr19	13497367	13497368	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119907	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr15.75116001.-	chr15	75116001	75116002	-	0	NA	"exon (NM_021819, exon 12 of 14)"	"exon (NM_021819, exon 12 of 14)"	2950	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII	complexin 3	protein-coding
chr13.66584748.+	chr13	66584748	66584749	+	0	NA	Intergenic	AluY|SINE|Alu	-814553	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr11.12932435.-	chr11	12932435	12932436	-	0	NA	"intron (NM_021961, intron 10 of 12)"	AluSx1|SINE|Alu	-78660	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LOC100506305	-	uncharacterized LOC100506305	miscRNA
chr1.21380295.-	chr1	21380295	21380296	-	0	NA	"intron (NM_003760, intron 1 of 31)"	SVA_D|Other|Other	-57581	NM_003760	8672	Hs.732241	NM_001198801	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	"eukaryotic translation initiation factor 4 gamma, 3"	protein-coding
chr14.24636528.-	chr14	24636528	24636529	-	0	NA	TTS (NM_006084)	TTS (NM_006084)	4706	NM_001048205	9985	Hs.419259	NM_001048205	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 homolog (yeast)	protein-coding
chr16.632092.-	chr16	632092	632093	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7265	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr12.79439088.+	chr12	79439088	79439089	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-345	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr5.150051427.+	chr5	150051427	150051428	+	0	NA	"exon (NM_133371, exon 5 of 7)"	"exon (NM_133371, exon 5 of 7)"	11024	NM_133371	91977	Hs.91626	NM_001122853	ENSG00000164591	MYOZ3	CS-3|CS3|FRP3	myozenin 3	protein-coding
chr9.139513599.+	chr9	139513599	139513600	+	0	NA	Intergenic	Intergenic	-39709	NR_046367	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr4.1284138.+	chr4	1284138	1284139	+	0	NA	"intron (NM_001017405, intron 1 of 8)"	CpG	466	NM_001017405	10296	Hs.139896	NM_001017405	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|PIG5	macrophage erythroblast attacher	protein-coding
chr9.38829829.+	chr9	38829829	38829830	+	0	NA	Intergenic	AluY|SINE|Alu	208744	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr16.60255830.-	chr16	60255830	60255831	-	0	NA	Intergenic	AluSc8|SINE|Alu	466735	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr5.178287366.+	chr5	178287366	178287367	+	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	412	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr9.6582751.-	chr9	6582751	6582752	-	0	NA	"intron (NM_000170, intron 15 of 24)"	AluY|SINE|Alu	-62941	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr7.56442215.+	chr7	56442215	56442216	+	0	NA	Intergenic	Intergenic	73853	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr6.14166702.+	chr6	14166702	14166703	+	0	NA	Intergenic	AluY|SINE|Alu	48837	NM_004233	9308	Hs.595133	NM_001040280	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
chr5.1476615.-	chr5	1476615	1476616	-	0	NA	"intron (NM_024830, intron 9 of 13)"	"intron (NM_024830, intron 9 of 13)"	31072	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr15.41788410.+	chr15	41788410	41788411	+	0	NA	"intron (NM_002220, intron 1 of 6)"	CpG	2354	NM_002220	3706	Hs.2722	NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
chr16.53227217.+	chr16	53227217	53227218	+	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	138272	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr2.222425831.-	chr2	222425831	222425832	-	0	NA	"intron (NM_004438, intron 3 of 17)"	AluY|SINE|Alu	-11179	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
chr17.3792496.-	chr17	3792496	3792497	-	0	NA	"intron (NM_172207, intron 1 of 15)"	"intron (NM_172207, intron 1 of 15)"	-1541	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr16.8967984.+	chr16	8967984	8967985	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5121	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr16.30810960.-	chr16	30810960	30810961	-	0	NA	Intergenic	AluSx|SINE|Alu	12437	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr1.97799167.-	chr1	97799167	97799168	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237688	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr2.54504605.-	chr2	54504605	54504606	-	0	NA	"intron (NM_138448, intron 3 of 3)"	AluSg|SINE|Alu	21196	NM_001003937	388951	Hs.620508	NM_001003937	ENSG00000178021	TSPYL6	-	TSPY-like 6	protein-coding
chr8.11312280.+	chr8	11312280	11312281	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11996	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr1.7952790.-	chr1	7952790	7952791	-	0	NA	Intergenic	AluSx1|SINE|Alu	39239	NM_021995	10911	Hs.715862	NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
chr3.32544125.+	chr3	32544125	32544126	+	0	NA	"exon (NM_017801, exon 1 of 4)"	"exon (NM_017801, exon 1 of 4)"	278	NM_017801	54918	Hs.731820	NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF-like MARVEL transmembrane domain containing 6	protein-coding
chr22.43175075.+	chr22	43175075	43175076	+	0	NA	Intergenic	AluY|SINE|Alu	-58199	NM_017436	53947	Hs.105956	NM_017436		A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	"alpha 1,4-galactosyltransferase"	protein-coding
chr17.8191982.-	chr17	8191982	8191983	-	0	NA	promoter-TSS (NM_016492)	promoter-TSS (NM_016492)	-13	NM_001177801	29098	Hs.408233	NM_001177801	ENSG00000108961	RANGRF	HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
chr3.150264170.+	chr3	150264170	150264171	+	0	NA	promoter-TSS (NM_032025)	promoter-TSS (NM_032025)	258	NM_014445	27230	Hs.713956	NM_014445	ENSG00000120742	SERP1	RAMP4	stress-associated endoplasmic reticulum protein 1	protein-coding
chr17.42869165.-	chr17	42869165	42869166	-	0	NA	Intergenic	AluY|SINE|Alu	-32597	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr7.936453.+	chr7	936453	936454	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20262	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr7.1798935.-	chr7	1798935	1798936	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50137	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr2.61306960.+	chr2	61306960	61306961	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13597	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr2.177042980.+	chr2	177042980	177042981	+	0	NA	"intron (NR_033979, intron 1 of 2)"	CpG	-10327	NM_024501	3231	Hs.83465	NM_024501	ENSG00000128645	HOXD1	HOX4|HOX4G|Hox-4.7	homeobox D1	protein-coding
chr7.109212781.+	chr7	109212781	109212782	+	0	NA	Intergenic	AluSz|SINE|Alu	387489	NR_003024	442720	Hs.535194	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	"eukaryotic translation initiation factor 3, subunit I pseudogene 1"	pseudo
chr1.78230550.-	chr1	78230550	78230551	-	0	NA	Intergenic	AluSz|SINE|Alu	4986	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr19.21734836.-	chr19	21734836	21734837	-	0	NA	Intergenic	SVA_D|Other|Other	-46399	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr4.4866944.-	chr4	4866944	4866945	-	0	NA	Intergenic	Intergenic	-5552	NM_002448	4487	Hs.424414	NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
chr10.102153561.-	chr10	102153561	102153562	-	0	NA	Intergenic	AluSq2|SINE|Alu	-20228	NR_026762	90271	Hs.628088	NR_026762		LINC00263	C10orf75|NCRNA00263	long intergenic non-protein coding RNA 263	miscRNA
chr12.118282879.-	chr12	118282879	118282880	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123149	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr16.60255823.+	chr16	60255823	60255824	+	0	NA	Intergenic	AluSc8|SINE|Alu	-466728	NR_028471	644649	Hs.729577	NR_028471		LOC644649	-	apolipoprotein O pseudogene	pseudo
chr4.40654871.+	chr4	40654871	40654872	+	0	NA	Intergenic	AluSp|SINE|Alu	-22988	NM_001098634	54502	Hs.518727	NM_001098634	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
chr16.77246808.-	chr16	77246808	77246809	-	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	-13459	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr13.20343662.+	chr13	20343662	20343663	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13497	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr9.138065699.-	chr9	138065699	138065700	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7756	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr10.134216476.-	chr10	134216476	134216477	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5774	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr14.52633561.+	chr14	52633561	52633562	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-97615	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
chr2.241550245.+	chr2	241550245	241550246	+	0	NA	"intron (NM_001195381, intron 2 of 5)"	AluSc8|SINE|Alu	5420	NM_001195381	2859	Hs.112218	NM_001195381	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
chr22.25817169.+	chr22	25817169	25817170	+	0	NA	Intergenic	CpG	-26885	NR_033734	1416	Hs.571835	NR_033733	ENSG00000100058	CRYBB2P1	CRYB2B	"crystallin, beta B2 pseudogene 1"	pseudo
chr5.39649206.+	chr5	39649206	39649207	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223871	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr20.33005258.+	chr20	33005258	33005259	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48872	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chrX.40019658.+	chrX	40019658	40019659	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluY|SINE|Alu	16924	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr16.78590742.-	chr16	78590742	78590743	-	0	NA	"intron (NM_016373, intron 8 of 8)"	AluSq|SINE|Alu	-457415	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr15.85162493.+	chr15	85162493	85162494	+	0	NA	"intron (NM_181877, intron 2 of 2)"	AluY|SINE|Alu	-12198	NR_003654	54581	Hs.658114	NM_022050	ENSG00000176700	SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
chr9.138065683.-	chr9	138065683	138065684	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7772	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr5.31921528.+	chr5	31921528	31921529	+	0	NA	"intron (NM_178140, intron 1 of 23)"	AluJb|SINE|Alu	14737	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	miscRNA
chr1.32679400.+	chr1	32679400	32679401	+	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	4705	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr1.3668265.+	chr1	3668265	3668266	+	0	NA	promoter-TSS (NM_152492)	promoter-TSS (NM_152492)	-700	NM_152492	148870	Hs.348700	NM_152492	ENSG00000162592	CCDC27	-	coiled-coil domain containing 27	protein-coding
chr17.79089767.-	chr17	79089767	79089768	-	0	NA	"3' UTR (NM_001144888, exon 14 of 14)"	"3' UTR (NM_001144888, exon 14 of 14)"	-9406	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr8.107670057.-	chr8	107670057	107670058	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-21	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr2.101924996.-	chr2	101924996	101924997	-	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	-182	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr17.3317557.-	chr17	3317557	3317558	-	0	NA	Intergenic	AluSc8|SINE|Alu	6305	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chrX.12751737.-	chrX	12751737	12751738	-	0	NA	Intergenic	AluY|SINE|Alu	57737	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr17.2721876.+	chr17	2721876	2721877	+	0	NA	"intron (NM_015085, intron 2 of 24)"	AluSz|SINE|Alu	22144	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr19.50670118.+	chr19	50670118	50670119	+	0	NA	Intergenic	AluSg|SINE|Alu	-3580	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr9.38829839.+	chr9	38829839	38829840	+	0	NA	Intergenic	AluY|SINE|Alu	208754	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr12.112161923.+	chr12	112161923	112161924	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_F|Other|Other	38066	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr9.38829874.-	chr9	38829874	38829875	-	0	NA	Intergenic	AluY|SINE|Alu	-208789	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr10.125611171.+	chr10	125611171	125611172	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40329	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr2.242500484.+	chr2	242500484	242500485	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1926	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chrX.53808340.-	chrX	53808340	53808341	-	0	NA	Intergenic	AluYb8|SINE|Alu	94643	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr19.4981414.-	chr19	4981414	4981415	-	0	NA	"intron (NM_015015, intron 1 of 22)"	"intron (NM_015015, intron 1 of 22)"	-12290	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr3.93689481.-	chr3	93689481	93689482	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3453	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr5.170687159.-	chr5	170687159	170687160	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49129	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr11.777217.+	chr11	777217	777218	+	0	NA	"intron (NM_182612, intron 1 of 7)"	CpG	270	NM_182612	347862	Hs.218362	NM_182612	ENSG00000177225	PDDC1	-	Parkinson disease 7 domain containing 1	protein-coding
chr3.112807977.-	chr3	112807977	112807978	-	0	NA	Intergenic	AluYc|SINE|Alu	69422	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr11.126081341.+	chr11	126081341	126081342	+	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	246	NM_032795	84881	Hs.150458	NM_001144827	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
chr2.158052719.+	chr2	158052719	158052720	+	0	NA	Intergenic	AluYk4|SINE|Alu	-61621	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)	protein-coding
chr5.170687207.-	chr5	170687207	170687208	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49081	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr17.9053904.-	chr17	9053904	9053905	-	0	NA	"intron (NM_004822, intron 2 of 6)"	"intron (NM_004822, intron 2 of 6)"	-129045	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr18.29729784.-	chr18	29729784	29729785	-	0	NA	Intergenic	AluSp|SINE|Alu	40203	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr6.166874036.-	chr6	166874036	166874037	-	0	NA	TTS (NR_046793)	TTS (NR_046793)	-4835	NR_046793	100874353	Hs.675698	NR_046793		RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1 (non-protein coding)	miscRNA
chr5.65936244.+	chr5	65936244	65936245	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44068	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr4.26862497.+	chr4	26862497	26862498	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	184	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr11.64819788.+	chr11	64819788	64819789	+	0	NA	"intron (NM_005468, intron 8 of 17)"	L2c|LINE|L2	6221	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding
chr19.41641947.+	chr19	41641947	41641948	+	0	NA	Intergenic	CpG	21594	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr12.50621221.+	chr12	50621221	50621222	+	0	NA	"intron (NM_016357, intron 3 of 10)"	AluSx|SINE|Alu	-4733	NM_001113547	51474	Hs.525419	NM_001113546	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
chr5.178491471.-	chr5	178491471	178491472	-	0	NA	"intron (NM_014594, intron 2 of 4)"	AluY|SINE|Alu	-3864	NM_014594	30832	Hs.272328	NM_014594		ZNF354C	KID3	zinc finger protein 354C	protein-coding
chr3.194483976.+	chr3	194483976	194483977	+	0	NA	"intron (NR_037891, intron 3 of 3)"	AluSx|SINE|Alu	54826	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	miscRNA
chr7.1147473.+	chr7	1147473	1147474	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19750	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr9.10787003.-	chr9	10787003	10787004	-	0	NA	Intergenic	AluYc3|SINE|Alu	174280	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr20.18441232.-	chr20	18441232	18441233	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6597	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr5.39649148.-	chr5	39649148	39649149	-	0	NA	Intergenic	AluSx3|SINE|Alu	223813	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr2.131551975.-	chr2	131551975	131551976	-	0	NA	Intergenic	AluY|SINE|Alu	-38111	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr15.85162495.+	chr15	85162495	85162496	+	0	NA	"intron (NM_181877, intron 2 of 2)"	AluY|SINE|Alu	-12196	NR_003654	54581	Hs.658114	NM_022050	ENSG00000176700	SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
chr2.126013196.+	chr2	126013196	126013197	+	0	NA	Intergenic	AluSc8|SINE|Alu	1230332	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr17.45897120.-	chr17	45897120	45897121	-	0	NA	"exon (NM_145798, exon 4 of 23)"	"exon (NM_145798, exon 4 of 23)"	-2027	NM_145798	114881	Hs.463320	NM_145798	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
chr7.64349804.+	chr7	64349804	64349805	+	0	NA	Intergenic	CpG	-13816	NR_003099	10793	Hs.520889	NM_021148		ZNF273	HZF9	zinc finger protein 273	protein-coding
chr1.54966498.+	chr1	54966498	54966499	+	0	NA	Intergenic	Intergenic	-47309	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr1.6508192.+	chr1	6508192	6508193	+	0	NA	"intron (NM_031475, intron 7 of 12)"	CpG	18063	NM_148965	8718	Hs.462529	NM_001039664	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	"tumor necrosis factor receptor superfamily, member 25"	protein-coding
chr3.45485918.-	chr3	45485918	45485919	-	0	NA	"intron (NM_015340, intron 6 of 21)"	AluYa5|SINE|Alu	-55843	NM_015340	23395	Hs.526975	NM_015340	ENSG00000011376	LARS2	LEURS	"leucyl-tRNA synthetase 2, mitochondrial"	protein-coding
chr2.224724810.-	chr2	224724810	224724811	-	0	NA	Intergenic	AluSp|SINE|Alu	22491	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr2.233477438.+	chr2	233477438	233477439	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6671	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr14.23706409.+	chr14	23706409	23706410	+	0	NA	Intergenic	AluSz|SINE|Alu	48900	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr17.907884.-	chr17	907884	907885	-	0	NA	"non-coding (NR_046393, exon 18 of 18)"	"non-coding (NR_046393, exon 18 of 18)"	-7527	NM_013337	29928	Hs.592108	NM_013337	ENSG00000177370	TIMM22	TEX4|TIM22	translocase of inner mitochondrial membrane 22 homolog (yeast)	protein-coding
chrX.122993641.-	chrX	122993641	122993642	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	21	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr10.95753444.-	chr10	95753444	95753445	-	0	NA	promoter-TSS (NM_016341)	promoter-TSS (NM_016341)	302	NM_016341	51196	Hs.655033	NM_001165979	ENSG00000138193	PLCE1	NPHS3|PLCE|PPLC	"phospholipase C, epsilon 1"	protein-coding
chr6.123144183.-	chr6	123144183	123144184	-	0	NA	Intergenic	AluY|SINE|Alu	-34212	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr3.49479554.+	chr3	49479554	49479555	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12797	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr3.1144625.+	chr3	1144625	1144626	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9996	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr12.34500190.+	chr12	34500190	34500191	+	0	NA	Intergenic	Intergenic	324974	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr1.9832300.-	chr1	9832300	9832301	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52250	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr7.39990098.+	chr7	39990098	39990099	+	0	NA	"5' UTR (NM_003718, exon 1 of 14)"	"5' UTR (NM_003718, exon 1 of 14)"	139	NM_031267	8621	Hs.233552	NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHED|hCDK13	cyclin-dependent kinase 13	protein-coding
chr9.77401530.-	chr9	77401530	77401531	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100733	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chrX.15336026.-	chrX	15336026	15336027	-	0	NA	Intergenic	AluY|SINE|Alu	2280	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr6.9140628.-	chr6	9140628	9140629	-	0	NA	Intergenic	Intergenic	-488186	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	LINC00078|NCRNA00078	highly up-regulated in liver cancer long non-coding RNA	miscRNA
chr10.102894911.-	chr10	102894911	102894912	-	0	NA	"intron (NM_005521, intron 2 of 2)"	CpG-3190	-3850	NM_005521	3195	Hs.89583	NM_001195517	ENSG00000107807	TLX1	HOX11|TCL3	T-cell leukemia homeobox 1	protein-coding
chr16.87799879.-	chr16	87799879	87799880	-	0	NA	promoter-TSS (NM_017566)	promoter-TSS (NM_017566)	281	NM_001184856	54758	Hs.123450	NM_001184854	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
chr9.136951687.+	chr9	136951687	136951688	+	0	NA	Intergenic	AluY|SINE|Alu	-18546	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr3.128194237.+	chr3	128194237	128194238	+	0	NA	Intergenic	Intergenic	-8146	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr9.8858126.+	chr9	8858126	8858127	+	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	-124180	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.41832091.+	chr1	41832091	41832092	+	0	NA	Intergenic	CpG	118253	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr22.38166146.+	chr22	38166146	38166147	+	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	23905	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr19.33554700.+	chr19	33554700	33554701	+	0	NA	"intron (NM_033103, intron 1 of 14)"	GC_rich|Low_complexity|Low_complexity	1124	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	"rhophilin, Rho GTPase binding protein 2"	protein-coding
chr9.26387246.-	chr9	26387246	26387247	-	0	NA	Intergenic	AluY|SINE|Alu	-320573	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr9.132176192.-	chr9	132176192	132176193	-	0	NA	Intergenic	CpG	74747	NR_038955	100506190	Hs.529860	NR_038955		LOC100506190	-	uncharacterized LOC100506190	miscRNA
chr16.33294067.+	chr16	33294067	33294068	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	4635	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr11.46291605.-	chr11	46291605	46291606	-	0	NA	Intergenic	AluY|SINE|Alu	7623	NM_052854	90993	Hs.405961	NM_052854	ENSG00000157613	CREB3L1	OASIS	cAMP responsive element binding protein 3-like 1	protein-coding
chr3.93689465.-	chr3	93689465	93689466	-	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	-3469	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr19.49061663.-	chr19	49061663	49061664	-	0	NA	"intron (NM_177973, intron 1 of 6)"	CpG	-6234	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	"sulfotransferase family, cytosolic, 2B, member 1"	protein-coding
chr4.186162042.-	chr4	186162042	186162043	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30758	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr15.91697578.+	chr15	91697578	91697579	+	0	NA	"intron (NM_014848, intron 2 of 13)"	L2a|LINE|L2	54039	NM_014848	9899	Hs.21754	NM_001167580	ENSG00000185518	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding
chr19.3552012.+	chr19	3552012	3552013	+	0	NA	"intron (NM_021731, intron 1 of 10)"	L2b|LINE|L2	5559	NM_174983	126321	Hs.656901	NM_001042680	ENSG00000161091	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
chr18.7062489.+	chr18	7062489	7062490	+	0	NA	"intron (NM_005559, intron 3 of 62)"	"intron (NM_005559, intron 3 of 62)"	55324	NM_005559	284217	Hs.270364	NM_005559	ENSG00000101680	LAMA1	LAMA|S-LAM-alpha	"laminin, alpha 1"	protein-coding
chr3.82554730.-	chr3	82554730	82554731	-	0	NA	Intergenic	MER52A|LTR|ERV1	743780	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr12.75694236.+	chr12	75694236	75694237	+	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	29600	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr7.6454044.+	chr7	6454044	6454045	+	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	33599	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr1.218165422.+	chr1	218165422	218165423	+	0	NA	Intergenic	AluSq|SINE|Alu	99180	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr21.43699108.+	chr21	43699108	43699109	+	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	36598	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr5.159429839.+	chr5	159429839	159429840	+	0	NA	Intergenic	AluSz|SINE|Alu	-6341	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr12.121338420.+	chr12	121338420	121338421	+	0	NA	"intron (NM_139015, intron 1 of 10)"	"intron (NM_139015, intron 1 of 10)"	3735	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr2.230579917.+	chr2	230579917	230579918	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-631	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr9.139775522.-	chr9	139775522	139775523	-	0	NA	Intergenic	AluSp|SINE|Alu	5443	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr19.45852792.+	chr19	45852792	45852793	+	0	NA	"exon (NM_177417, exon 8 of 13)"	"exon (NM_177417, exon 8 of 13)"	8794	NM_177417	147700	Hs.298079	NM_177417	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
chr16.49498945.+	chr16	49498945	49498946	+	0	NA	Intergenic	CpG	91137	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr8.123636973.+	chr8	123636973	123636974	+	0	NA	Intergenic	AluSx|SINE|Alu	-156928	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr22.39152072.+	chr22	39152072	39152073	+	0	NA	promoter-TSS (NM_015374)	promoter-TSS (NM_015374)	-48	NM_015374	25777	Hs.744734	NM_001199579	ENSG00000100242	SUN2	UNC84B	Sad1 and UNC84 domain containing 2	protein-coding
chr8.110985370.+	chr8	110985370	110985371	+	0	NA	"intron (NM_014379, intron 1 of 2)"	AluSz|SINE|Alu	1589	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr17.6879221.-	chr17	6879221	6879222	-	0	NA	Intergenic	AluSp|SINE|Alu	20163	NM_000697	239	Hs.654431	NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase	protein-coding
chr8.56971119.+	chr8	56971119	56971120	+	0	NA	Intergenic	AluSg|SINE|Alu	15341	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr17.8082288.-	chr17	8082288	8082289	-	0	NA	Intergenic	AluSx|SINE|Alu	2574	NM_032354	84314	Hs.513933	NM_032354		TMEM107	GRVS638|PRO1268	transmembrane protein 107	protein-coding
chr17.74894594.+	chr17	74894594	74894595	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25865	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr12.70060051.+	chr12	70060051	70060052	+	0	NA	"intron (NM_032735, intron 9 of 9)"	AluSz|SINE|Alu	23005	NM_152439	144453	Hs.280782	NM_032735	ENSG00000127325	BEST3	VMD2L3	bestrophin 3	protein-coding
chr16.341100.+	chr16	341100	341101	+	0	NA	"intron (NM_181050, intron 8 of 9)"	CpG	7982	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr16.58300831.+	chr16	58300831	58300832	+	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	16991	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr19.7587591.+	chr19	7587591	7587592	+	0	NA	promoter-TSS (NM_020533)	promoter-TSS (NM_020533)	95	NM_020533	57192	Hs.631858	NM_020533	ENSG00000090674	MCOLN1	MG-2|ML4|MLIV|MST080|TRP-ML1|TRPM-L1|TRPML1	mucolipin 1	protein-coding
chr20.48802899.-	chr20	48802899	48802900	-	0	NA	Intergenic	Intergenic	4221	NM_005194	1051	Hs.720603	NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|CRP2|IL6DBP|LAP|NF-IL6|TCF5	"CCAAT/enhancer binding protein (C/EBP), beta"	protein-coding
chr2.241363407.+	chr2	241363407	241363408	+	0	NA	Intergenic	Intergenic	-11708	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr8.11312271.+	chr8	11312271	11312272	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	12005	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr2.120282022.+	chr2	120282022	120282023	+	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	6	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr2.9934267.-	chr2	9934267	9934268	-	0	NA	Intergenic	Intergenic	49304	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr6.65337781.-	chr6	65337781	65337782	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673530	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr19.19932522.-	chr19	19932522	19932523	-	0	NA	promoter-TSS (NM_001145404)	promoter-TSS (NM_001145404)	-38	NM_001145404	440515	Hs.351906	NM_001145405		ZNF506	-	zinc finger protein 506	protein-coding
chr3.49479475.+	chr3	49479475	49479476	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12718	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr10.86331299.+	chr10	86331299	86331300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	242889	NM_018999	54462	Hs.461988	NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
chr9.14830728.+	chr9	14830728	14830729	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51197	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr2.109090610.+	chr2	109090610	109090611	+	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	25033	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr2.43254053.+	chr2	43254053	43254054	+	0	NA	Intergenic	Intergenic	199692	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr21.38378488.-	chr21	38378488	38378489	-	0	NA	promoter-TSS (NM_018962)	promoter-TSS (NM_018962)	375	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	DSCR6	RIPPLY3	Down syndrome critical region gene 6	protein-coding
chr1.163468692.-	chr1	163468692	163468693	-	0	NA	Intergenic	SVA_A|Other|Other	-176969	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	"NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)"	protein-coding
chr6.4780581.+	chr6	4780581	4780582	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3901	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr4.110600289.-	chr4	110600289	110600290	-	0	NA	"intron (NM_017918, intron 4 of 7)"	SVA_A|Other|Other	-24340	NM_001226	839	Hs.654616	NM_001226	ENSG00000138794	CASP6	MCH2	"caspase 6, apoptosis-related cysteine peptidase"	protein-coding
chr9.24897722.+	chr9	24897722	24897723	+	0	NA	Intergenic	AluSc|SINE|Alu	-352048	NM_001271706	100129669	Hs.573530	XM_003846250	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
chr20.42544821.+	chr20	42544821	42544822	+	0	NA	promoter-TSS (NM_032883)	promoter-TSS (NM_032883)	39	NM_001098796	84969	Hs.26608	NM_001098796	ENSG00000124191	TOX2	C20orf100|GCX-1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
chr6.168209504.-	chr6	168209504	168209505	-	0	NA	Intergenic	AluSq|SINE|Alu	11965	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr8.26371342.-	chr8	26371342	26371343	-	0	NA	promoter-TSS (NM_001197293)	promoter-TSS (NM_001197293)	-141	NM_007257	10687	Hs.591838	NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	paraneoplastic Ma antigen 2	protein-coding
chr20.60953283.+	chr20	60953283	60953284	+	0	NA	Intergenic	Intergenic	-8838	NM_001024	6227	Hs.190968	NM_001024	ENSG00000171858	RPS21	S21	ribosomal protein S21	protein-coding
chr14.80915461.-	chr14	80915461	80915462	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218064	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr17.78559367.-	chr17	78559367	78559368	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40742	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr10.76620821.-	chr10	76620821	76620822	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34650	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr20.25677432.+	chr20	25677432	25677433	+	0	NA	promoter-TSS (NM_015655)	promoter-TSS (NM_015655)	37	NM_015655	26152	Hs.661684	NM_015655	ENSG00000130684	ZNF337	-	zinc finger protein 337	protein-coding
chr17.79881066.+	chr17	79881066	79881067	+	0	NA	"5' UTR (NM_002359, exon 2 of 3)"	"5' UTR (NM_002359, exon 2 of 3)"	378	NM_032711	4097	Hs.744113	NM_002359	ENSG00000197063	MAFG	hMAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian)	protein-coding
chr19.49186307.-	chr19	49186307	49186308	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10043	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr2.61701804.-	chr2	61701804	61701805	-	0	NA	Intergenic	AluSg|SINE|Alu	3955	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr18.2377828.+	chr18	2377828	2377829	+	0	NA	Intergenic	AluSg7|SINE|Alu	193661	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr22.40042809.-	chr22	40042809	40042810	-	0	NA	"exon (NM_021096, exon 8 of 37)"	"exon (NM_021096, exon 8 of 37)"	-76051	NM_001003406	8911	Hs.125116	NM_001003406	ENSG00000100346	CACNA1I	Cav3.3|ca(v)3.3	"calcium channel, voltage-dependent, T type, alpha 1I subunit"	protein-coding
chr9.131293131.-	chr9	131293131	131293132	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21706	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr17.80408549.+	chr17	80408549	80408550	+	0	NA	promoter-TSS (NM_001193655)	promoter-TSS (NM_001193655)	158	NM_001100407	79415	Hs.163113	NM_001033046	ENSG00000178927	C17orf62	-	chromosome 17 open reading frame 62	protein-coding
chr21.47813434.-	chr21	47813434	47813435	-	0	NA	"intron (NM_006031, intron 21 of 46)"	CpG	65428	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr9.138065611.+	chr9	138065611	138065612	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7844	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr17.70877077.+	chr17	70877077	70877078	+	0	NA	"intron (NM_139177, intron 5 of 9)"	AluY|SINE|Alu	211776	NM_139177	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr7.91516771.+	chr7	91516771	91516772	+	0	NA	Intergenic	SVA_A|Other|Other	-6755	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr17.74707082.+	chr17	74707082	74707083	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-26	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr3.115133762.+	chr3	115133762	115133763	+	0	NA	Intergenic	AluSp|SINE|Alu	-208389	NM_002045	2596	Hs.134974	NM_001130064	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding
chr4.106031862.+	chr4	106031862	106031863	+	0	NA	Intergenic	SVA_E|Other|Other	-35170	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chrX.54371301.+	chrX	54371301	54371302	+	0	NA	"intron (NM_001002838, intron 1 of 22)"	AluY|SINE|Alu	13137	NM_001002838	65267	Hs.92423	NM_001002838	ENSG00000196632	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
chr12.133019229.-	chr12	133019229	133019230	-	0	NA	Intergenic	Intergenic	47928	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr7.5553289.-	chr7	5553289	5553290	-	0	NA	"exon (NM_024963, exon 1 of 5)"	"exon (NM_024963, exon 1 of 5)"	-110	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr17.78978008.+	chr17	78978008	78978009	+	0	NA	Intergenic	CpG	12367	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr12.56394831.-	chr12	56394831	56394832	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3788	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr2.44294802.-	chr2	44294802	44294803	-	0	NA	Intergenic	SVA_D|Other|Other	71658	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr19.2340023.-	chr19	2340023	2340024	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11394	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr2.64739166.-	chr2	64739166	64739167	-	0	NA	Intergenic	SVA_F|Other|Other	12273	NM_001002243	54812	Hs.655167	NM_001002243	ENSG00000119844	AFTPH	Nbla10388	aftiphilin	protein-coding
chr21.37681318.-	chr21	37681318	37681319	-	0	NA	Intergenic	AluSx1|SINE|Alu	11169	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr2.9551616.+	chr2	9551616	9551617	+	0	NA	"intron (NM_022334, intron 4 of 5)"	AluSx3|SINE|Alu	12027	NM_004763	9270	Hs.467662	NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
chr8.144512797.-	chr8	144512797	144512798	-	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	195	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.1821692.-	chr16	1821692	1821693	-	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	-18	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr2.47661292.-	chr2	47661292	47661293	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31086	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr2.229496711.+	chr2	229496711	229496712	+	0	NA	Intergenic	AluYc|SINE|Alu	-450350	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr8.144640647.+	chr8	144640647	144640648	+	0	NA	"intron (NM_001166237, intron 4 of 13)"	CpG	170	NM_024736	79792	Hs.118983	NM_001166237	ENSG00000104518	GSDMD	DF5L|DFNA5L|GSDMDC1	gasdermin D	protein-coding
chr6.158244285.+	chr6	158244285	158244286	+	0	NA	promoter-TSS (NM_016224)	promoter-TSS (NM_016224)	-9	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	MST155|MSTP155|SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
chr12.34492644.-	chr12	34492644	34492645	-	0	NA	Intergenic	GSATII|Satellite|centr	-317428	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr10.6985543.-	chr10	6985543	6985544	-	0	NA	Intergenic	AluSx1|SINE|Alu	-163983	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr3.148709361.-	chr3	148709361	148709362	-	0	NA	"5' UTR (NM_001184721, exon 1 of 6)"	"5' UTR (NM_001184721, exon 1 of 6)"	-166	NM_004130	2992	Hs.477892	NM_001184720	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
chr12.75694232.-	chr12	75694232	75694233	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29604	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chrX.69654772.-	chrX	69654772	69654773	-	0	NA	Intergenic	Intergenic	9933	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr11.69189626.+	chr11	69189626	69189627	+	0	NA	Intergenic	Intergenic	128004	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr2.71562008.+	chr2	71562008	71562009	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3123	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr7.5345668.-	chr7	5345668	5345669	-	0	NA	TTS (NM_001080495)	TTS (NM_001080495)	-23107	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr20.62108076.-	chr20	62108076	62108077	-	0	NA	Intergenic	AluSq2|SINE|Alu	4083	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr5.3188275.-	chr5	3188275	3188276	-	0	NA	Intergenic	CpG	-347933	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr6.10382197.-	chr6	10382197	10382198	-	0	NA	Intergenic	CpG	30354	NR_033910	100130275	Hs.661431	NR_033910		LOC100130275	-	uncharacterized LOC100130275	miscRNA
chr1.247494947.+	chr1	247494947	247494948	+	0	NA	promoter-TSS (NM_032752)	promoter-TSS (NM_032752)	98	NM_032752	84838	Hs.654803	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
chr19.50670081.-	chr19	50670081	50670082	-	0	NA	Intergenic	AluSg|SINE|Alu	3543	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr7.12595788.+	chr7	12595788	12595789	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14415	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr19.4866189.-	chr19	4866189	4866190	-	0	NA	"intron (NM_005817, intron 1 of 7)"	AluSx1|SINE|Alu	-1591	NM_001164194	10226	Hs.140452	NM_001164189	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
chr16.49498950.-	chr16	49498950	49498951	-	0	NA	Intergenic	CpG	-91142	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr7.25057675.+	chr7	25057675	25057676	+	0	NA	Intergenic	SVA_F|Other|Other	-37915	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr17.77104412.+	chr17	77104412	77104413	+	0	NA	"intron (NM_001082575, intron 5 of 14)"	"intron (NM_001082575, intron 5 of 14)"	33393	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr9.139028962.-	chr9	139028962	139028963	-	0	NA	Intergenic	MIRb|SINE|MIR	18231	NM_152833	90120	Hs.287411	NM_001256526	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
chr6.168219507.-	chr6	168219507	168219508	-	0	NA	Intergenic	AluSp|SINE|Alu	-7969	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr20.58244268.+	chr20	58244268	58244269	+	0	NA	"intron (NM_080672, intron 1 of 12)"	"intron (NM_080672, intron 1 of 12)"	-7448	NM_001199506	116154	Hs.473218	NM_001199505	ENSG00000087495	PHACTR3	C20orf101|H17739|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
chr7.5257629.+	chr7	5257629	5257630	+	0	NA	"exon (NM_015610, exon 7 of 13)"	"exon (NM_015610, exon 7 of 13)"	3729	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr5.149844148.-	chr5	149844148	149844149	-	0	NA	Intergenic	Intergenic	14829	NM_001025070	6208	Hs.381126	NM_001025070	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
chr3.1346443.+	chr3	1346443	1346444	+	0	NA	"intron (NM_014461, intron 7 of 22)"	AluSg4|SINE|Alu	211814	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr6.15189318.-	chr6	15189318	15189319	-	0	NA	Intergenic	SVA_F|Other|Other	56888	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr22.20192301.-	chr22	20192301	20192302	-	0	NA	"non-coding (NR_038460, exon 1 of 4)"	"non-coding (NR_038460, exon 1 of 4)"	-140	NR_038460	284865	Hs.638498	NR_038460	ENSG00000249923	LOC284865	-	uncharacterized LOC284865	miscRNA
chr9.16855797.+	chr9	16855797	16855798	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	14989	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr3.47865619.-	chr3	47865619	47865620	-	0	NA	"intron (NM_014966, intron 5 of 22)"	AluSx|SINE|Alu	-21220	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|RETCOR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding
chr6.25384332.-	chr6	25384332	25384333	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104676	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr11.71702898.-	chr11	71702898	71702899	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7060	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr20.43342089.+	chr20	43342089	43342090	+	0	NA	Intergenic	AluSx|SINE|Alu	-1796	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr9.16766047.-	chr9	16766047	16766048	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104739	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr12.116724235.-	chr12	116724235	116724236	-	0	NA	Intergenic	AluY|SINE|Alu	9244	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr5.78890177.-	chr5	78890177	78890178	-	0	NA	Intergenic	AluY|SINE|Alu	18066	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr10.135104681.-	chr10	135104681	135104682	-	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	14274	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr16.85498202.-	chr16	85498202	85498203	-	0	NA	Intergenic	MIRb|SINE|MIR	146827	NM_001134473	23199	Hs.461647	NM_001134473	ENSG00000131149	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
chr7.62940005.-	chr7	62940005	62940006	-	0	NA	Intergenic	AluYf4|SINE|Alu	80586	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr11.1946052.-	chr11	1946052	1946053	-	0	NA	"intron (NM_001042780, intron 4 of 14)"	"intron (NM_001042780, intron 4 of 14)"	-5253	NM_001042782	7140	Hs.73454	NM_001042780	ENSG00000130595	TNNT3	TNTF	"troponin T type 3 (skeletal, fast)"	protein-coding
chr1.197418599.+	chr1	197418599	197418600	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181265	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr19.34167447.-	chr19	34167447	34167448	-	0	NA	"intron (NM_001127895, intron 2 of 4)"	AluSz|SINE|Alu	7987	NM_022467	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr7.157129517.+	chr7	157129517	157129518	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-193	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr10.122148860.+	chr10	122148860	122148861	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67606	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr9.7934881.+	chr9	7934881	7934882	+	0	NA	Intergenic	AluY|SINE|Alu	-135082	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	C9orf123	-	chromosome 9 open reading frame 123	protein-coding
chr1.41960597.+	chr1	41960597	41960598	+	0	NA	Intergenic	Intergenic	-10253	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr17.408991.+	chr17	408991	408992	+	0	NA	Intergenic	L2|LINE|L2	-113260	NM_182705	359845	Hs.741149	NM_182705	ENSG00000183688	FAM101B	-	"family with sequence similarity 101, member B"	protein-coding
chr19.2432914.+	chr19	2432914	2432915	+	0	NA	"intron (NM_032737, intron 8 of 11)"	CpG	-5039	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr13.103088603.-	chr13	103088603	103088604	-	0	NA	Intergenic	AluY|SINE|Alu	34479	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr15.92290045.-	chr15	92290045	92290046	-	0	NA	Intergenic	AluY|SINE|Alu	106893	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr8.142657058.-	chr8	142657058	142657059	-	0	NA	Intergenic	Intergenic	139728	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr14.23706396.-	chr14	23706396	23706397	-	0	NA	Intergenic	AluSz|SINE|Alu	-48913	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr10.30145011.-	chr10	30145011	30145012	-	0	NA	Intergenic	AluSx3|SINE|Alu	120281	NM_003174	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
chr7.1071538.-	chr7	1071538	1071539	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	8876	NR_029898	442907		NR_029898		MIR339	MIRN339|hsa-mir-339	microRNA 339	miscRNA
chr18.4662552.-	chr18	4662552	4662553	-	0	NA	Intergenic	AluY|SINE|Alu	207286	NM_004746	9229	Hs.654793	NM_001003809	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|GKAP|SAPAP1|hGKAP	"discs, large (Drosophila) homolog-associated protein 1"	protein-coding
chr4.188471113.-	chr4	188471113	188471114	-	0	NA	Intergenic	AluSg|SINE|Alu	44346	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr6.141000382.-	chr6	141000382	141000383	-	0	NA	Intergenic	AluY|SINE|Alu	4569	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr12.57177864.-	chr12	57177864	57177865	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20756	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr7.2582249.-	chr7	2582249	2582250	-	0	NA	"intron (NM_152743, intron 6 of 13)"	"intron (NM_152743, intron 6 of 13)"	-13143	NM_152743	221927	Hs.520623	NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|RMFSL	BRCA1-associated ATM activator 1	protein-coding
chr19.56133859.-	chr19	56133859	56133860	-	0	NA	"exon (NM_203374, exon 2 of 2)"	"exon (NM_203374, exon 2 of 2)"	-2082	NM_203374	147808	Hs.53996	NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
chr1.78837825.-	chr1	78837825	78837826	-	0	NA	Intergenic	AluSx|SINE|Alu	118903	NM_001039585	5737	Hs.654365	NM_000959	ENSG00000122420	PTGFR	FP	prostaglandin F receptor (FP)	protein-coding
chr11.2905617.+	chr11	2905617	2905618	+	0	NA	"intron (NM_000076, intron 1 of 2)"	CpG-3796	1378	NM_001122631	1028	Hs.106070	NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	"cyclin-dependent kinase inhibitor 1C (p57, Kip2)"	protein-coding
chr1.178011415.-	chr1	178011415	178011416	-	0	NA	Intergenic	HERVH-int|LTR|ERV1	4273	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr6.126111935.-	chr6	126111935	126111936	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-26	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr13.21872273.-	chr13	21872273	21872274	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-9	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr3.195928314.-	chr3	195928314	195928315	-	0	NA	"intron (NM_001039617, intron 5 of 7)"	AluSz6|SINE|Alu	-9986	NM_001039617	131540	Hs.111591	NM_144637	ENSG00000163958	ZDHHC19	DHHC19	"zinc finger, DHHC-type containing 19"	protein-coding
chr9.6608162.-	chr9	6608162	6608163	-	0	NA	"intron (NM_000170, intron 4 of 24)"	AluY|SINE|Alu	-37530	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr12.107112613.-	chr12	107112613	107112614	-	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	34135	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr9.138437761.-	chr9	138437761	138437762	-	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	224	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr18.73357743.+	chr18	73357743	73357744	+	0	NA	Intergenic	L2|LINE|L2	-218154	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr5.36561355.+	chr5	36561355	36561356	+	0	NA	Intergenic	AluSx|SINE|Alu	-45102	NM_001166696	6507	Hs.481918	NM_001166695	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	"solute carrier family 1 (glial high affinity glutamate transporter), member 3"	protein-coding
chr7.70646757.-	chr7	70646757	70646758	-	0	NA	"intron (NM_022479, intron 1 of 10)"	AluJr|SINE|Alu	-49234	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNT16|GALNT20|GALNTL3	Williams-Beuren syndrome chromosome region 17	protein-coding
chr13.114069124.-	chr13	114069124	114069125	-	0	NA	Intergenic	AluSx1|SINE|Alu	-34333	NM_199162	113622	Hs.98669	NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
chr5.78890172.+	chr5	78890172	78890173	+	0	NA	Intergenic	AluY|SINE|Alu	-18071	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr8.7414124.+	chr8	7414124	7414125	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2502	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chrX.19862960.+	chrX	19862960	19862961	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42784	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr1.3035162.+	chr1	3035162	3035163	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-9377	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr9.105850355.-	chr9	105850355	105850356	-	0	NA	Intergenic	AluYc|SINE|Alu	-92762	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr17.28705930.+	chr17	28705930	28705931	+	0	NA	promoter-TSS (NM_001304)	promoter-TSS (NM_001304)	-12	NM_001304	1362	Hs.446079	NM_001199775	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
chr20.50261065.+	chr20	50261065	50261066	+	0	NA	"intron (NM_006045, intron 14 of 27)"	AluY|SINE|Alu	-81695	NM_001258294	4773	Hs.744148	NM_001136021	ENSG00000101096	NFATC2	NFAT1|NFATP	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2"	protein-coding
chr2.96149448.+	chr2	96149448	96149449	+	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	1031	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr15.76627340.+	chr15	76627340	76627341	+	0	NA	Intergenic	AluSg|SINE|Alu	-1807	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr9.8858142.-	chr9	8858142	8858143	-	0	NA	"intron (NM_002839, intron 11 of 45)"	CpG	124196	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr9.77401545.-	chr9	77401545	77401546	-	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	-100718	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chr12.118079845.+	chr12	118079845	118079846	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280238	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr6.34857464.+	chr6	34857464	34857465	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	426	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr3.183967452.+	chr3	183967452	183967453	+	0	NA	promoter-TSS (NM_032331)	promoter-TSS (NM_032331)	7	NM_032331	9718	Hs.146161	NM_001037324	ENSG00000145194	ECE2	-	endothelin converting enzyme 2	protein-coding
chr6.126100202.+	chr6	126100202	126100203	+	0	NA	Intergenic	AluY|SINE|Alu	-2105	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.44380966.-	chr2	44380966	44380967	-	0	NA	Intergenic	AluY|SINE|Alu	15034	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr16.31103190.-	chr16	31103190	31103191	-	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	3060	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr18.2377794.-	chr18	2377794	2377795	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193695	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr22.18892163.+	chr22	18892163	18892164	+	0	NA	Intergenic	Intergenic	-1573	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr16.440474.-	chr16	440474	440475	-	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	6718	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr8.38592249.-	chr8	38592249	38592250	-	0	NA	"intron (NM_001146216, intron 1 of 12)"	"intron (NM_001146216, intron 1 of 12)"	-6545	NM_001146216	6867	Hs.279245	NM_001122824	ENSG00000147526	TACC1	Ga55	"transforming, acidic coiled-coil containing protein 1"	protein-coding
chr7.1798941.-	chr7	1798941	1798942	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50143	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr1.110881060.-	chr1	110881060	110881061	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-733	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr7.73642247.-	chr7	73642247	73642248	-	0	NA	"intron (NM_032463, intron 13 of 13)"	AluSq2|SINE|Alu	-18160	NM_032464	7462	Hs.741249	NM_014146	ENSG00000086730	LAT2	LAB|NTAL|WBSCR15|WBSCR5|WSCR5	"linker for activation of T cells family, member 2"	protein-coding
chr10.133869276.+	chr10	133869276	133869277	+	0	NA	Intergenic	Intergenic	-49037	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr21.46737146.-	chr21	46737146	46737147	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29179	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr8.145748186.+	chr8	145748186	145748187	+	0	NA	"exon (NM_001024678, exon 5 of 5)"	"exon (NM_001024678, exon 5 of 5)"	4230	NM_001024678	441381	Hs.740859	NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
chr18.49731948.+	chr18	49731948	49731949	+	0	NA	Intergenic	AluY|SINE|Alu	-134594	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr2.131551972.-	chr2	131551972	131551973	-	0	NA	Intergenic	AluY|SINE|Alu	-38108	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr2.20739865.-	chr2	20739865	20739866	-	0	NA	Intergenic	Intergenic	-93030	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
chr13.23713202.+	chr13	23713202	23713203	+	0	NA	Intergenic	AluY|SINE|Alu	-41858	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr14.102109520.+	chr14	102109520	102109521	+	0	NA	Intergenic	AluY|SINE|Alu	81832	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr4.129835335.+	chr4	129835335	129835336	+	0	NA	"intron (NM_144643, intron 18 of 20)"	AluY|SINE|Alu	104556	NM_024900	79960	Hs.12420	NM_024900	ENSG00000077684	PHF17	JADE1	PHD finger protein 17	protein-coding
chr20.35167608.-	chr20	35167608	35167609	-	0	NA	Intergenic	AluY|SINE|Alu	2279	NM_006097	10398	Hs.504687	NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	"myosin, light chain 9, regulatory"	protein-coding
chr7.72991465.-	chr7	72991465	72991466	-	0	NA	"intron (NM_012453, intron 1 of 6)"	AluY|SINE|Alu	-1548	NM_012453	26608	Hs.647044	NM_012453		TBL2	WBSCR13|WS-betaTRP	transducin (beta)-like 2	protein-coding
chr6.41515938.+	chr6	41515938	41515939	+	0	NA	"intron (NM_001012427, intron 1 of 16)"	CpG	1774	NM_138457	116113	Hs.131436	NM_001012426	ENSG00000137166	FOXP4	hFKHLA	forkhead box P4	protein-coding
chr7.66064187.+	chr7	66064187	66064188	+	0	NA	Intergenic	AluY|SINE|Alu	-20689	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr16.75552006.-	chr16	75552006	75552007	-	0	NA	Intergenic	AluY|SINE|Alu	-17062	NM_024533	23563	Hs.710689	NM_024533	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5	protein-coding
chr12.49163949.-	chr12	49163949	49163950	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1871	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr17.61686663.-	chr17	61686663	61686664	-	0	NA	TTS (NM_016360)	TTS (NM_016360)	-8432	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
chr13.112722095.-	chr13	112722095	112722096	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-182	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr3.164851997.+	chr3	164851997	164851998	+	0	NA	Intergenic	AluY|SINE|Alu	-55714	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr19.47627999.+	chr19	47627999	47628000	+	0	NA	Intergenic	AluY|SINE|Alu	-6081	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr10.64708096.-	chr10	64708096	64708097	-	0	NA	Intergenic	SVA_E|Other|Other	129169	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr10.35559806.+	chr10	35559806	35559807	+	0	NA	"intron (NM_181698, intron 3 of 11)"	AluY|SINE|Alu	23853	NM_181698	219771	Hs.714184	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
chr19.3577371.+	chr19	3577371	3577372	+	0	NA	"intron (NM_006339, intron 8 of 9)"	CpG-12510	4428	NM_006339	10362	Hs.406534	NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
chrX.141491555.-	chrX	141491555	141491556	-	0	NA	Intergenic	AluY|SINE|Alu	198479	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr17.29255139.-	chr17	29255139	29255140	-	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	-6385	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr12.101954445.+	chr12	101954445	101954446	+	0	NA	Intergenic	AluSx|SINE|Alu	-34264	NM_001254721	4604	Hs.654589	NM_001254718	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	"myosin binding protein C, slow type"	protein-coding
chr6.43070140.-	chr6	43070140	43070141	-	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	-25588	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr1.28099683.+	chr1	28099683	28099684	+	0	NA	promoter-TSS (NM_177424)	promoter-TSS (NM_177424)	-11	NM_177424	23673	Hs.523855	NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
chr8.98766129.-	chr8	98766129	98766130	-	0	NA	Intergenic	AluSz|SINE|Alu	21680	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr1.31773666.+	chr1	31773666	31773667	+	0	NA	"intron (NM_016505, intron 1 of 7)"	AluSq2|SINE|Alu	3824	NM_016505	51538	Hs.524094	NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|RP11-266K22.1|pNO40	"zinc finger, CCHC domain containing 17"	protein-coding
chr3.122695696.+	chr3	122695696	122695697	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-715	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr21.43198261.+	chr21	43198261	43198262	+	0	NA	Intergenic	Intergenic	-11012	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr6.2221722.+	chr6	2221722	2221723	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24146	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr19.33211962.+	chr19	33211962	33211963	+	0	NA	"intron (NM_001110822, intron 1 of 12)"	CpG	1283	NM_001110822	91646	Hs.729739	NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
chr2.106682174.+	chr2	106682174	106682175	+	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	61	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr2.101245840.+	chr2	101245840	101245841	+	0	NA	Intergenic	Intergenic	66422	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr14.105736134.+	chr14	105736134	105736135	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20393	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr14.23706430.-	chr14	23706430	23706431	-	0	NA	Intergenic	AluSz|SINE|Alu	-48879	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chrX.70493527.+	chrX	70493527	70493528	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9515	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr1.16166987.+	chr1	16166987	16166988	+	0	NA	"intron (NR_024279, intron 1 of 1)"	AluSc8|SINE|Alu	-7372	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chr12.123259453.+	chr12	123259453	123259454	+	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	397	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chrX.153523346.+	chrX	153523346	153523347	+	0	NA	promoter-TSS (NM_012253)	promoter-TSS (NM_012253)	108	NM_001586	1527	Hs.738440	NM_001205201	ENSG00000185254	TEX28	CXorf2|TEX28P1|TEX28P2|fTEX	testis expressed 28	protein-coding
chr16.22675492.+	chr16	22675492	22675493	+	0	NA	Intergenic	AluJr|SINE|Alu	-54111	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr7.150076077.-	chr7	150076077	150076078	-	0	NA	promoter-TSS (NM_173680)	promoter-TSS (NM_173680)	329	NM_173680	285971	Hs.655734	NM_173680	ENSG00000196456	ZNF775	-	zinc finger protein 775	protein-coding
chr6.168149218.-	chr6	168149218	168149219	-	0	NA	Intergenic	Intergenic	-48321	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr5.18111529.-	chr5	18111529	18111530	-	0	NA	Intergenic	AluY|SINE|Alu	724110	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr10.133842648.+	chr10	133842648	133842649	+	0	NA	Intergenic	SVA_F|Other|Other	-47213	NM_004052	664	Hs.144873	NM_004052		BNIP3	NIP3	BCL2/adenovirus E1B 19kDa interacting protein 3	protein-coding
chr1.36675726.-	chr1	36675726	36675727	-	0	NA	Intergenic	AluSc8|SINE|Alu	14291	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
chr9.10974554.+	chr9	10974554	10974555	+	0	NA	Intergenic	L1PBa|LINE|L1	-361831	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.157539677.-	chr7	157539677	157539678	-	0	NA	"intron (NM_130842, intron 11 of 21)"	"intron (NM_130842, intron 11 of 21)"	107600	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr13.108435257.-	chr13	108435257	108435258	-	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	-84203	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr17.4926472.-	chr17	4926472	4926473	-	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	-12255	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr9.86597303.-	chr9	86597303	86597304	-	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	-1666	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr3.36494734.+	chr3	36494734	36494735	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72637	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr1.100493680.-	chr1	100493680	100493681	-	0	NA	Intergenic	AluSx|SINE|Alu	10109	NM_033055	64645	Hs.124156	NM_033055	ENSG00000156875	HIAT1	-	hippocampus abundant transcript 1	protein-coding
chr19.3049779.+	chr19	3049779	3049780	+	0	NA	Intergenic	AluY|SINE|Alu	-2146	NM_001144761	7089	Hs.332173	NM_001144761	ENSG00000065717	TLE2	ESG|ESG2|GRG2	"transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)"	protein-coding
chr8.25460435.+	chr8	25460435	25460436	+	0	NA	Intergenic	Intergenic	143922	NM_152562	157313	Hs.33366	NM_152562	ENSG00000184661	CDCA2	Repo-Man	cell division cycle associated 2	protein-coding
chr19.18057773.-	chr19	18057773	18057774	-	0	NA	Intergenic	AluSx|SINE|Alu	4338	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr16.2955280.-	chr16	2955280	2955281	-	0	NA	Intergenic	CpG	6700	NM_032296	84256	Hs.655321	NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
chr17.81024626.+	chr17	81024626	81024627	+	0	NA	Intergenic	Intergenic	-12941	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr20.32072313.+	chr20	32072313	32072314	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5615	NM_001032999	9139	Hs.153934	NM_001032999	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	"core-binding factor, runt domain, alpha subunit 2; translocated to, 2"	protein-coding
chr7.394788.+	chr7	394788	394789	+	0	NA	Intergenic	Intergenic	-24603	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr6.126100191.+	chr6	126100191	126100192	+	0	NA	Intergenic	AluY|SINE|Alu	-2116	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.242143576.+	chr2	242143576	242143577	+	0	NA	"intron (NM_001001891, intron 9 of 24)"	"intron (NM_001001891, intron 9 of 24)"	15652	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
chr3.45348415.-	chr3	45348415	45348416	-	0	NA	Intergenic	LTR12C|LTR|ERV1	80601	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr14.105736158.+	chr14	105736158	105736159	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20417	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr11.122809910.-	chr11	122809910	122809911	-	0	NA	"intron (NM_024806, intron 5 of 8)"	AluSc|SINE|Alu	-42469	NM_001098169	390259	Hs.449687	NM_001098169	ENSG00000188909	BSX	BSX1	brain-specific homeobox	protein-coding
chr16.86528682.+	chr16	86528682	86528683	+	0	NA	"intron (NR_036444, intron 1 of 3)"	CpG	13784	NR_036444	400550	Hs.448825	NR_033925	ENSG00000268388	FENDRR	FOXF1-AS1|TCONS_00024240|lincFOXF1	FOXF1 adjacent non-coding developmental regulatory RNA	miscRNA
chr10.69912488.-	chr10	69912488	69912489	-	0	NA	"intron (NR_045663, intron 6 of 17)"	AluSq|SINE|Alu	-43298	NM_001256268	84665	Hs.55205	NM_001256267	ENSG00000138347	MYPN	MYOP	myopalladin	protein-coding
chr21.25155465.+	chr21	25155465	25155466	+	0	NA	Intergenic	AluY|SINE|Alu	-398309	NR_040254	266917	Hs.145622	NR_040254	ENSG00000228592	D21S2088E	-	D21S2088E	miscRNA
chr10.17622278.-	chr10	17622278	17622279	-	0	NA	Intergenic	AluY|SINE|Alu	-37095	NM_014241	9200	Hs.114062	NM_014241	ENSG00000165996	PTPLA	CAP|HACD1	"protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A"	protein-coding
chr17.27070048.+	chr17	27070048	27070049	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-975	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
chr2.130902786.-	chr2	130902786	130902787	-	0	NA	promoter-TSS (NM_001258307)	promoter-TSS (NM_001258307)	79	NM_207310	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chr11.113665973.-	chr11	113665973	113665974	-	0	NA	Intergenic	AluSx|SINE|Alu	-15455	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr12.117500322.+	chr12	117500322	117500323	+	0	NA	"intron (NM_017899, intron 2 of 7)"	AluSx1|SINE|Alu	36929	NM_001168325	54997	Hs.525709	NM_001168325	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
chr22.38336426.-	chr22	38336426	38336427	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13228	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr17.32964500.+	chr17	32964500	32964501	+	0	NA	"exon (NM_207313, exon 10 of 10)"	"exon (NM_207313, exon 10 of 10)"	56732	NM_207313	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	-	transmembrane protein 132E	protein-coding
chr18.29729787.-	chr18	29729787	29729788	-	0	NA	Intergenic	AluSp|SINE|Alu	40200	NM_005925	4225	Hs.194777	NM_005925	ENSG00000141434	MEP1B	-	"meprin A, beta"	protein-coding
chr5.694018.+	chr5	694018	694019	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-508	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr16.924576.-	chr16	924576	924577	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69133	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr11.1122300.-	chr11	1122300	1122301	-	0	NA	Intergenic	Intergenic	-47425	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr11.33064470.-	chr11	33064470	33064471	-	0	NA	"intron (NM_001145541, intron 1 of 9)"	AluSq4|SINE|Alu	-2909	NM_001145541	55346	Hs.655341	NM_001145541	ENSG00000176148	TCP11L1	dJ85M6.3	"t-complex 11, testis-specific-like 1"	protein-coding
chr1.40260141.-	chr1	40260141	40260142	-	0	NA	Intergenic	AluSx|SINE|Alu	5608	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr4.163164056.+	chr4	163164056	163164057	+	0	NA	Intergenic	AluY|SINE|Alu	-78870	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr1.238519092.-	chr1	238519092	238519093	-	0	NA	Intergenic	AluSg|SINE|Alu	-130225	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LOC339535	-	uncharacterized LOC339535	miscRNA
chr13.111268094.-	chr13	111268094	111268095	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-163	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr8.3500951.+	chr8	3500951	3500952	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351377	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr3.73614837.+	chr3	73614837	73614838	+	0	NA	"intron (NM_015009, intron 3 of 9)"	AluSx|SINE|Alu	59235	NM_015009	23024	Hs.743998	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
chr12.89754116.+	chr12	89754116	89754117	+	0	NA	Intergenic	AluY|SINE|Alu	-7820	NM_022652	1848	Hs.718640	NM_001946	ENSG00000139318	DUSP6	MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chr20.42143324.-	chr20	42143324	42143325	-	0	NA	"exon (NM_032107, exon 4 of 22)"	"exon (NM_032107, exon 4 of 22)"	-248	NM_015478	26013	Hs.736988	NM_015478	ENSG00000185513	L3MBTL1	H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3	l(3)mbt-like 1 (Drosophila)	protein-coding
chr13.35082302.-	chr13	35082302	35082303	-	0	NA	"intron (NR_047036, intron 2 of 2)"	AluY|SINE|Alu	-132520	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr13.103088598.-	chr13	103088598	103088599	-	0	NA	Intergenic	AluY|SINE|Alu	34474	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr1.206809261.+	chr1	206809261	206809262	+	0	NA	"intron (NM_003582, intron 1 of 2)"	"intron (NM_003582, intron 1 of 2)"	380	NM_001004023	8444	Hs.164267	NM_001004023	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding
chr9.93000202.-	chr9	93000202	93000203	-	0	NA	Intergenic	AluY|SINE|Alu	196421	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	miscRNA
chr16.85477885.+	chr16	85477885	85477886	+	0	NA	Intergenic	AluSc|SINE|Alu	-137954	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	miscRNA
chr10.35336436.-	chr10	35336436	35336437	-	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	-26822	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr14.20811146.+	chr14	20811146	20811147	+	0	NA	promoter-TSS (NM_005484)	promoter-TSS (NM_005484)	424	NR_002312	85495	Hs.613102	NR_002312	ENSG00000252678	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	miscRNA
chr11.7603259.-	chr11	7603259	7603260	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15158	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr12.67941929.-	chr12	67941929	67941930	-	0	NA	Intergenic	AluY|SINE|Alu	100583	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chr4.1626689.+	chr4	1626689	1626690	+	0	NA	Intergenic	CpG	59029	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr16.30960891.-	chr16	30960891	30960892	-	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	-486	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr2.121086029.-	chr2	121086029	121086030	-	0	NA	Intergenic	Intergenic	17690	NM_002193	3625	Hs.1735	NM_002193	ENSG00000163083	INHBB	-	"inhibin, beta B"	protein-coding
chr19.47364612.+	chr19	47364612	47364613	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10409	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr4.114652890.+	chr4	114652890	114652891	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30193	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr14.103988581.-	chr14	103988581	103988582	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-615	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chrX.93693256.+	chrX	93693256	93693257	+	0	NA	Intergenic	AluY|SINE|Alu	764244	NM_001171111	286499	Hs.110069	NM_001171109	ENSG00000179083	FAM133A	CT115	"family with sequence similarity 133, member A"	protein-coding
chr2.88125010.-	chr2	88125010	88125011	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	(CCG)n|Simple_repeat|Simple_repeat	-276	NM_001078170	729857	Hs.728970	NM_001078170		RGPD2	NUP358|RANBP2L2|RGP2	RANBP2-like and GRIP domain containing 2	protein-coding
chr1.226350786.+	chr1	226350786	226350787	+	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	23637	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr12.115235467.+	chr12	115235467	115235468	+	0	NA	Intergenic	AluSz6|SINE|Alu	-113498	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
chr13.23713140.-	chr13	23713140	23713141	-	0	NA	Intergenic	AluY|SINE|Alu	41920	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr18.19632300.+	chr18	19632300	19632301	+	0	NA	Intergenic	AluSg4|SINE|Alu	-117104	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr12.133808134.-	chr12	133808134	133808135	-	0	NA	"exon (NM_001191054, exon 3 of 9)"	"exon (NM_001191054, exon 3 of 9)"	-4288	NM_001191054	647589	Hs.703008	NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
chr12.127898795.+	chr12	127898795	127898796	+	0	NA	Intergenic	Intergenic	-467367	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr19.14508473.-	chr19	14508473	14508474	-	0	NA	"exon (NM_078481, exon 7 of 20)"	"exon (NM_078481, exon 7 of 20)"	-16517	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr11.69189591.+	chr11	69189591	69189592	+	0	NA	Intergenic	Intergenic	127969	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr8.1205522.+	chr8	1205522	1205523	+	0	NA	Intergenic	Intergenic	45305	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr2.179093186.+	chr2	179093186	179093187	+	0	NA	"intron (NM_001201480, intron 1 of 25)"	AluY|SINE|Alu	33978	NM_032523	114880	Hs.318775	NM_001201480	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein-like 6	protein-coding
chr14.20778648.+	chr14	20778648	20778649	+	0	NA	TTS (NM_182849)	TTS (NM_182849)	-4495	NM_138376	91875	Hs.98553	NM_138376		TTC5	Strap	tetratricopeptide repeat domain 5	protein-coding
chrX.132399710.+	chrX	132399710	132399711	+	0	NA	Intergenic	Intergenic	-47334	NM_016521	51270	Hs.142908	NM_016521	ENSG00000183434	TFDP3	CT30|DP4|HCA661	"transcription factor Dp family, member 3"	protein-coding
chr1.69778196.-	chr1	69778196	69778197	-	0	NA	Intergenic	L1PA8A|LINE|L1	447662	NM_020794	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
chr18.11959816.-	chr18	11959816	11959817	-	0	NA	Intergenic	SVA_D|Other|Other	21611	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr19.2427756.-	chr19	2427756	2427757	-	0	NA	TTS (NM_032737)	TTS (NM_032737)	-119	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr16.3229080.+	chr16	3229080	3229081	+	0	NA	Intergenic	AluSp|SINE|Alu	-25167	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr2.85554138.+	chr2	85554138	85554139	+	0	NA	"exon (NM_006464, exon 2 of 4)"	"exon (NM_006464, exon 2 of 4)"	1281	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr11.86267668.+	chr11	86267668	86267669	+	0	NA	"exon (NM_001161586, exon 4 of 15)"	"exon (NM_001161586, exon 4 of 15)"	115572	NM_001014811	10873	Hs.199743	NM_001014811	ENSG00000151376	ME3	NADP-ME	"malic enzyme 3, NADP(+)-dependent, mitochondrial"	protein-coding
chr12.132313908.+	chr12	132313908	132313909	+	0	NA	"intron (NM_016155, intron 1 of 9)"	CpG	967	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr17.53449396.-	chr17	53449396	53449397	-	0	NA	Intergenic	AluY|SINE|Alu	-49945	NM_012329	23531	Hs.656753	NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
chr16.6394605.+	chr16	6394605	6394606	+	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluY|SINE|Alu	325473	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr17.81061192.+	chr17	81061192	81061193	+	0	NA	Intergenic	Intergenic	23625	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr12.121346470.-	chr12	121346470	121346471	-	0	NA	Intergenic	AluSp|SINE|Alu	4315	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr5.179167551.-	chr5	179167551	179167552	-	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	-7700	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr1.183308388.+	chr1	183308388	183308389	+	0	NA	"intron (NM_015039, intron 1 of 10)"	AluY|SINE|Alu	-34379	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr16.1332201.-	chr16	1332201	1332202	-	0	NA	Intergenic	AluSx|SINE|Alu	-25928	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr6.7232200.-	chr6	7232200	7232201	-	0	NA	"intron (NM_001168344, intron 10 of 11)"	"intron (NM_001168344, intron 10 of 11)"	-81341	NM_003144	6745	Hs.114033	NM_003144	ENSG00000124783	SSR1	TRAPA	"signal sequence receptor, alpha"	protein-coding
chr7.100044755.-	chr7	100044755	100044756	-	0	NA	Intergenic	AluSc8|SINE|Alu	10661	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr22.49578261.+	chr22	49578261	49578262	+	0	NA	Intergenic	Intergenic	315679	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr9.16855810.-	chr9	16855810	16855811	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14976	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr9.83468.-	chr9	83468	83469	-	0	NA	Intergenic	SVA_E|Other|Other	-34949	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chr8.41166079.-	chr8	41166079	41166080	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-911	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr4.37548435.-	chr4	37548435	37548436	-	0	NA	"intron (NM_001104629, intron 1 of 3)"	HERVE_a-int|LTR|ERV1	37420	NM_018302	55286	Hs.107527	NM_001104629		C4orf19	-	chromosome 4 open reading frame 19	protein-coding
chr2.114015911.-	chr2	114015911	114015912	-	0	NA	"intron (NR_015377, intron 3 of 5)"	"intron (NR_015377, intron 3 of 5)"	-20587	NM_013952	7849	Hs.469728	NM_003466	ENSG00000125618	PAX8	-	paired box 8	protein-coding
chr10.24476774.+	chr10	24476774	24476775	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20946	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr22.46303230.-	chr22	46303230	46303231	-	0	NA	Intergenic	Intergenic	-69778	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr13.111159615.-	chr13	111159615	111159616	-	0	NA	"intron (NM_001846, intron 46 of 47)"	"intron (NM_001846, intron 46 of 47)"	-911	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	miscRNA
chr12.133304073.+	chr12	133304073	133304074	+	0	NA	"intron (NM_015114, intron 12 of 12)"	CpG	16680	NM_001170543	192111	Hs.102558	NM_001170543	ENSG00000247077	PGAM5	BXLBV68	phosphoglycerate mutase family member 5	protein-coding
chr15.89358724.-	chr15	89358724	89358725	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12050	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr20.61823848.+	chr20	61823848	61823849	+	0	NA	Intergenic	AluY|SINE|Alu	13996	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3	microRNA 124-3	miscRNA
chr2.202092464.-	chr2	202092464	202092465	-	0	NA	"intron (NM_001206542, intron 7 of 7)"	AluY|SINE|Alu	5702	NM_033355	841	Hs.599762	NM_001080124	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	"caspase 8, apoptosis-related cysteine peptidase"	protein-coding
chr12.6665509.-	chr12	6665509	6665510	-	0	NA	promoter-TSS (NM_001039670)	promoter-TSS (NM_001039670)	260	NR_036467	25900	Hs.15243	NM_001039670	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
chr2.43254042.+	chr2	43254042	43254043	+	0	NA	Intergenic	Intergenic	199703	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr17.7246086.-	chr17	7246086	7246087	-	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	-6238	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr13.19728188.-	chr13	19728188	19728189	-	0	NA	Intergenic	Intergenic	-11066	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr19.11060470.+	chr19	11060470	11060471	+	0	NA	Intergenic	AluY|SINE|Alu	-11128	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr16.53227234.-	chr16	53227234	53227235	-	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	-138289	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr5.131817906.-	chr5	131817906	131817907	-	0	NA	"3' UTR (NM_002198, exon 10 of 10)"	"3' UTR (NM_002198, exon 10 of 10)"	-8559	NM_002198	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
chr5.37144806.-	chr5	37144806	37144807	-	0	NA	"intron (NM_023073, intron 42 of 51)"	AluY|SINE|Alu	-104724	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr17.4697347.+	chr17	4697347	4697348	+	0	NA	Intergenic	AluY|SINE|Alu	-2092	NM_002798	5694	Hs.77060	NM_001270481	ENSG00000142507	PSMB6	DELTA|LMPY|Y	"proteasome (prosome, macropain) subunit, beta type, 6"	protein-coding
chr2.19132832.+	chr2	19132832	19132833	+	0	NA	Intergenic	AluYk4|SINE|Alu	-361986	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr19.267152.+	chr19	267152	267153	+	0	NA	Intergenic	CpG	24017	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr17.48631016.-	chr17	48631016	48631017	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6566	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr10.1995013.-	chr10	1995013	1995014	-	0	NA	Intergenic	Intergenic	-61529	NR_040253	282980	Hs.576810	NR_040253	ENSG00000234962	LINC00700	-	long intergenic non-protein coding RNA 700	miscRNA
chr9.131013028.-	chr9	131013028	131013029	-	0	NA	"exon (NM_004408, exon 20 of 21)"	"exon (NM_004408, exon 20 of 21)"	5719	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	-	microRNA 3154	miscRNA
chr18.55790709.+	chr18	55790709	55790710	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25856	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr15.51200995.-	chr15	51200995	51200996	-	0	NA	"exon (NM_007347, exon 1 of 21)"	"exon (NM_007347, exon 1 of 21)"	-126	NM_001252127	23431	Hs.413366	NM_001252127	ENSG00000081014	AP4E1	CPSQ4|SPG51	"adaptor-related protein complex 4, epsilon 1 subunit"	protein-coding
chr13.20711621.-	chr13	20711621	20711622	-	0	NA	TTS (NM_021954)	TTS (NM_021954)	-23562	NM_021954	2700	Hs.130313	NM_021954	ENSG00000121743	GJA3	CX46|CZP3	"gap junction protein, alpha 3, 46kDa"	protein-coding
chrX.53123346.-	chrX	53123346	53123347	-	0	NA	Intergenic	CpG	-11804	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr14.65639781.-	chr14	65639781	65639782	-	0	NA	Intergenic	AluY|SINE|Alu	70368	NR_073137	4149	Hs.285354	NM_001271068	ENSG00000125952	MAX	bHLHd4	MYC associated factor X	protein-coding
chr7.627692.-	chr7	627692	627693	-	0	NA	"intron (NM_002735, intron 7 of 10)"	"intron (NM_002735, intron 7 of 10)"	-67664	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr11.67351074.-	chr11	67351074	67351075	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-8	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr9.10786984.+	chr9	10786984	10786985	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174261	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr20.591929.-	chr20	591929	591930	-	0	NA	Intergenic	Intergenic	1019	NM_004609	6939	Hs.437	NM_004609		TCF15	EC2|PARAXIS|bHLHa40	transcription factor 15 (basic helix-loop-helix)	protein-coding
chr14.60336420.-	chr14	60336420	60336421	-	0	NA	"intron (NM_021136, intron 1 of 8)"	"intron (NM_021136, intron 1 of 8)"	-1137	NM_021136	6252	Hs.368626	NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
chr2.238396162.-	chr2	238396162	238396163	-	0	NA	"intron (NM_001042467, intron 1 of 14)"	CpG	-284	NM_024101	79083	Hs.102406	NM_001042467	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
chr12.92086122.+	chr12	92086122	92086123	+	0	NA	Intergenic	AluSx3|SINE|Alu	449367	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LOC256021	-	uncharacterized LOC256021	protein-coding
chr16.3441582.-	chr16	3441582	3441583	-	0	NA	"intron (NM_017810, intron 2 of 5)"	AluSq2|SINE|Alu	-9443	NM_017810	54925	Hs.592078	NM_017810	ENSG00000140987	ZSCAN32	ZNF434	zinc finger and SCAN domain containing 32	protein-coding
chr14.101892561.+	chr14	101892561	101892562	+	0	NA	Intergenic	AluY|SINE|Alu	129452	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr12.51818952.+	chr12	51818952	51818953	+	0	NA	promoter-TSS (NM_001258403)	promoter-TSS (NM_001258403)	51	NM_001258403	9498	Hs.4749	NM_001039960	ENSG00000050438	SLC4A8	NBC3|NDCBE	"solute carrier family 4, sodium bicarbonate cotransporter, member 8"	protein-coding
chr8.101661665.-	chr8	101661665	101661666	-	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	-228	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr22.43045020.-	chr22	43045020	43045021	-	0	NA	"intron (NM_000398, intron 1 of 8)"	CpG	-385	NM_000398	1727	Hs.561064	NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
chrX.89718084.-	chrX	89718084	89718085	-	0	NA	Intergenic	AluY|SINE|Alu	-541144	NM_138960	90316	Hs.592220	NM_138960	ENSG00000153779	TGIF2LX	TGIFLX	"TGFB-induced factor homeobox 2-like, X-linked"	protein-coding
chr19.8274570.+	chr19	8274570	8274571	+	0	NA	"intron (NM_024552, intron 1 of 11)"	CpG	353	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
chr19.45678458.-	chr19	45678458	45678459	-	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	-3043	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr8.41583299.-	chr8	41583299	41583300	-	0	NA	"exon (NM_000037, exon 6 of 43)"	"exon (NM_000037, exon 6 of 43)"	60495	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr6.55774907.-	chr6	55774907	55774908	-	0	NA	Intergenic	SVA_D|Other|Other	34532	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr2.192374882.-	chr2	192374882	192374883	-	0	NA	Intergenic	AluY|SINE|Alu	167916	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr14.51521330.+	chr14	51521330	51521331	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	41092	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr5.1883530.-	chr5	1883530	1883531	-	0	NA	promoter-TSS (NM_016358)	promoter-TSS (NM_016358)	650	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr2.126700693.-	chr2	126700693	126700694	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712818	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr2.239058201.-	chr2	239058201	239058202	-	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	-10838	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr11.16587543.-	chr11	16587543	16587544	-	0	NA	Intergenic	AluY|SINE|Alu	89608	NM_033326	55553	Hs.368226	NM_001145811	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
chr2.70199611.+	chr2	70199611	70199612	+	0	NA	"intron (NR_033872, intron 9 of 10)"	AluSx1|SINE|Alu	-10214	NM_152792	151516	Hs.516253	NM_152792	ENSG00000244617	ASPRV1	MUNO|SASP|SASPase|Taps	"aspartic peptidase, retroviral-like 1"	protein-coding
chr9.1433505.-	chr9	1433505	1433506	-	0	NA	Intergenic	AluSc|SINE|Alu	-382885	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr11.127081187.+	chr11	127081187	127081188	+	0	NA	Intergenic	AluY|SINE|Alu	208382	NR_040078	283165	Hs.730461	NM_173579	ENSG00000218109	KIRREL3-AS3	NCRNA00288|PRR10	KIRREL3 antisense RNA 3	miscRNA
chr19.3314090.-	chr19	3314090	3314091	-	0	NA	Intergenic	Intergenic	45471	NM_205843	4782	Hs.170131	NM_001245002	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I/C (CCAAT-binding transcription factor)	protein-coding
chr7.1001907.-	chr7	1001907	1001908	-	0	NA	Intergenic	Intergenic	7618	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr2.32250704.-	chr2	32250704	32250705	-	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	-14140	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chrX.120410906.+	chrX	120410906	120410907	+	0	NA	Intergenic	AluY|SINE|Alu	229444	NM_012084	2747	Hs.368538	NM_012084	ENSG00000182890	GLUD2	GDH2|GLUDP1	glutamate dehydrogenase 2	protein-coding
chr15.77590064.+	chr15	77590064	77590065	+	0	NA	"intron (NM_024776, intron 1 of 7)"	AluSc|SINE|Alu	-72318	NR_026813	81698	Hs.656938	NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	miscRNA
chr17.73439501.+	chr17	73439501	73439502	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13163	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr10.118500975.-	chr10	118500975	118500976	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1110	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr6.167600171.-	chr6	167600171	167600172	-	0	NA	Intergenic	Intergenic	-16090	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr12.131382784.+	chr12	131382784	131382785	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	26167	NM_006325	5901	Hs.10842	NM_006325		RAN	ARA24|Gsp1|TC4	"RAN, member RAS oncogene family"	protein-coding
chr9.138065617.+	chr9	138065617	138065618	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7838	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr19.53979690.-	chr19	53979690	53979691	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8701	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr13.114814057.-	chr13	114814057	114814058	-	0	NA	"intron (NM_007368, intron 3 of 23)"	CpG	-84038	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr1.155631607.-	chr1	155631607	155631608	-	0	NA	"intron (NM_001198899, intron 6 of 7)"	AluY|SINE|Alu	-18013	NM_001198899	55249	Hs.584927	NM_139119	ENSG00000163374	YY1AP1	HCCA1|HCCA2|YAP|YY1AP	YY1 associated protein 1	protein-coding
chr6.58779259.-	chr6	58779259	58779260	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	491535	NR_003660	375513	Hs.744093	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	"glucuronidase, beta pseudogene 4"	pseudo
chr19.15719758.+	chr19	15719758	15719759	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6271	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr11.64774845.+	chr11	64774845	64774846	+	0	NA	Intergenic	AluSz|SINE|Alu	-6740	NM_001667	402	Hs.502836	NM_001199745	ENSG00000213465	ARL2	ARFL2	ADP-ribosylation factor-like 2	protein-coding
chr17.7246096.+	chr17	7246096	7246097	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6248	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr2.115328233.+	chr2	115328233	115328234	+	0	NA	"intron (NM_001178036, intron 2 of 26)"	AluY|SINE|Alu	109053	NM_001178036	57628	Hs.580539	NM_001004360	ENSG00000175497	DPP10	DPL2|DPPY|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
chr7.75420389.-	chr7	75420389	75420390	-	0	NA	Intergenic	AluSq2|SINE|Alu	1325	NM_006072	10344	Hs.131342	NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	chemokine (C-C motif) ligand 26	protein-coding
chr19.45406767.-	chr19	45406767	45406768	-	0	NA	"3' UTR (NM_001128916, exon 10 of 10)"	"3' UTR (NM_001128916, exon 10 of 10)"	2272	NM_000041	348	Hs.654439	NM_000041	ENSG00000130203	APOE	AD2|LDLCQ5|LPG	apolipoprotein E	protein-coding
chr12.8851100.+	chr12	8851100	8851101	+	0	NA	"intron (NM_020734, intron 1 of 6)"	CpG	582	NM_020734	57494	Hs.504670	NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK-like family member B	protein-coding
chr11.638956.-	chr11	638956	638957	-	0	NA	"intron (NM_000797, intron 1 of 3)"	CpG	-1651	NM_000797	1815	Hs.99922	NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
chr1.62903097.+	chr1	62903097	62903098	+	0	NA	"intron (NM_003368, intron 1 of 8)"	CpG	714	NM_003368	7398	Hs.35086	NM_001017415	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
chr16.57605235.+	chr16	57605235	57605236	+	0	NA	"intron (NM_153837, intron 10 of 11)"	MIR|SINE|MIR	28634	NM_153837	221188	Hs.187884	NM_153837	ENSG00000159618	GPR114	PGR27	G protein-coupled receptor 114	protein-coding
chr1.3418688.+	chr1	3418688	3418689	+	0	NA	"intron (NM_001409, intron 17 of 36)"	"intron (NM_001409, intron 17 of 36)"	47541	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr14.83280562.-	chr14	83280562	83280563	-	0	NA	Intergenic	SVA_D|Other|Other	1280357	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr9.134449907.+	chr9	134449907	134449908	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43245	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr11.105759239.+	chr11	105759239	105759240	+	0	NA	"intron (NM_000829, intron 6 of 16)"	AluYa5|SINE|Alu	133715	NM_032424	84437	Hs.266782	NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
chr9.79995387.-	chr9	79995387	79995388	-	0	NA	"intron (NM_001018037, intron 66 of 70)"	AluSx4|SINE|Alu	202554	NR_026668	100286938	Hs.662256	NR_026668	ENSG00000232998	VPS13A-AS1	-	VPS13A antisense RNA 1	miscRNA
chr11.31560854.-	chr11	31560854	31560855	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29557	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr2.198058469.-	chr2	198058469	198058470	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117052	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr2.43254020.+	chr2	43254020	43254021	+	0	NA	Intergenic	Intergenic	199725	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr12.123259461.+	chr12	123259461	123259462	+	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	405	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chr15.75701831.-	chr15	75701831	75701832	-	0	NA	"intron (NM_001145357, intron 8 of 20)"	AluSc8|SINE|Alu	40863	NM_006715	4123	Hs.598731	NM_001256494	ENSG00000140400	MAN2C1	MAN6A8|MANA|MANA1	"mannosidase, alpha, class 2C, member 1"	protein-coding
chr5.29531050.-	chr5	29531050	29531051	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604073	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr11.83150049.+	chr11	83150049	83150050	+	0	NA	Intergenic	AluSx|SINE|Alu	-152672	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr8.107670107.+	chr8	107670107	107670108	+	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	71	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr6.33811423.+	chr6	33811423	33811424	+	0	NA	Intergenic	Intergenic	-39630	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr19.50614635.-	chr19	50614635	50614636	-	0	NA	TTS (NR_024214).7	TTS (NR_024214).7	-1110	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr2.44380961.-	chr2	44380961	44380962	-	0	NA	Intergenic	AluY|SINE|Alu	15039	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr8.3500959.+	chr8	3500959	3500960	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351369	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr11.47788894.-	chr11	47788894	47788895	-	0	NA	promoter-TSS (NM_015308)	promoter-TSS (NM_015308)	-99	NM_015308	23360	Hs.6834	NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
chr14.92023722.+	chr14	92023722	92023723	+	0	NA	Intergenic	SVA_D|Other|Other	-47078	NM_032560	55671	Hs.533887	NM_017936	ENSG00000100796	SMEK1	FLFL1|KIAA2010|PP4R3A|smk-1|smk1	"SMEK homolog 1, suppressor of mek1 (Dictyostelium)"	protein-coding
chr17.7197552.-	chr17	7197552	7197553	-	0	NA	"exon (NM_015982, exon 1 of 9)"	"exon (NM_015982, exon 1 of 9)"	-324	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr19.34623449.+	chr19	34623449	34623450	+	0	NA	Intergenic	SVA_D|Other|Other	-39903	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr3.51705368.+	chr3	51705368	51705369	+	0	NA	promoter-TSS (NM_001243725)	promoter-TSS (NM_001243725)	78	NM_001243725	51368	Hs.517864	NM_001129884	ENSG00000164081	TEX264	SIG11|ZSIG11	testis expressed 264	protein-coding
chr15.29561885.-	chr15	29561885	29561886	-	0	NA	"exon (NM_138704, exon 1 of 1)"	"exon (NM_138704, exon 1 of 1)"	-135	NM_138704	56160	Hs.94011	NM_138704	ENSG00000185115	NDNL2	HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3	necdin-like 2	protein-coding
chr8.98787966.+	chr8	98787966	98787967	+	0	NA	"exon (NM_018407, exon 1 of 7)"	"exon (NM_018407, exon 1 of 7)"	157	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr14.70228134.+	chr14	70228134	70228135	+	0	NA	Intergenic	AluY|SINE|Alu	-5695	NM_001039465	6430	Hs.632326	NM_001039465	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine/arginine-rich splicing factor 5	protein-coding
chr2.183903176.-	chr2	183903176	183903177	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-53	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr2.45395913.-	chr2	45395913	45395914	-	0	NA	Intergenic	CpG	-86167	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	UNQ6975	-	putative uncharacterized protein UNQ6975/PRO21958	miscRNA
chr18.70534385.-	chr18	70534385	70534386	-	0	NA	"intron (NM_138966, intron 1 of 10)"	CpG	-425	NM_138966	81832	Hs.465407	NM_001201465	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chr19.41313153.+	chr19	41313153	41313154	+	0	NA	"exon (NM_080732, exon 4 of 6)"	"exon (NM_080732, exon 4 of 6)"	7819	NM_053046	112398	Hs.730737	NM_053046	ENSG00000269858	EGLN2	EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl nine homolog 2 (C. elegans)	protein-coding
chr4.69917109.+	chr4	69917109	69917110	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-30996	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr16.3203698.+	chr16	3203698	3203699	+	0	NA	Intergenic	AluSg|SINE|Alu	18564	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr6.9971931.-	chr6	9971931	9971932	-	0	NA	Intergenic	L1PA2|LINE|L1	440620	NR_033910	100130275	Hs.661431	NR_033910		LOC100130275	-	uncharacterized LOC100130275	miscRNA
chr2.10130477.+	chr2	10130477	10130478	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSx1|SINE|Alu	38685	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr3.102973931.+	chr3	102973931	102973932	+	0	NA	Intergenic	SVA_D|Other|Other	820072	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr11.71702978.+	chr11	71702978	71702979	+	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	-6980	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr16.2848547.+	chr16	2848547	2848548	+	0	NA	promoter-TSS (NM_001135086)	promoter-TSS (NM_001135086)	61	NM_001135086	360226	Hs.647401	NM_001135086		PRSS41	TESSP1	"protease, serine, 41"	protein-coding
chr11.92637244.-	chr11	92637244	92637245	-	0	NA	Intergenic	AluY|SINE|Alu	65545	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr4.188471107.-	chr4	188471107	188471108	-	0	NA	Intergenic	AluSg|SINE|Alu	44340	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr2.224254296.-	chr2	224254296	224254297	-	0	NA	Intergenic	MER49|LTR|ERV1	-212921	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
chr11.2466259.+	chr11	2466259	2466260	+	0	NA	promoter-TSS (NM_000218)	promoter-TSS (NM_000218)	38	NM_000218	3784	Hs.95162	NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	"potassium voltage-gated channel, KQT-like subfamily, member 1"	protein-coding
chr12.113598746.+	chr12	113598746	113598747	+	0	NA	"intron (NM_001111322, intron 19 of 19)"	"intron (NM_001111322, intron 19 of 19)"	11083	NM_001144872	387885	Hs.486856	NM_001144872	ENSG00000186710	CCDC42B	-	coiled-coil domain containing 42B	protein-coding
chr9.130734360.+	chr9	130734360	130734361	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8452	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr6.126100216.+	chr6	126100216	126100217	+	0	NA	Intergenic	AluY|SINE|Alu	-2091	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr5.20266674.+	chr5	20266674	20266675	+	0	NA	Intergenic	AluSz|SINE|Alu	-278321	NM_001167667	1016	Hs.317632	NM_001167667	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	"cadherin 18, type 2"	protein-coding
chr16.58288661.+	chr16	58288661	58288662	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4821	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr12.110821758.-	chr12	110821758	110821759	-	0	NA	"intron (NM_016238, intron 6 of 10)"	AluSg4|SINE|Alu	-19777	NM_001137664	51434	Hs.719935	NM_001137664	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding
chr1.153574069.+	chr1	153574069	153574070	+	0	NA	Intergenic	AluY|SINE|Alu	11445	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr10.8150595.+	chr10	8150595	8150596	+	0	NA	Intergenic	AluY|SINE|Alu	53928	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr19.744281.+	chr19	744281	744282	+	0	NA	"intron (NM_002579, intron 8 of 8)"	AluY|SINE|Alu	-6865	NM_173481	126353	Hs.439180	NM_173481	ENSG00000099812	C19orf21	-	chromosome 19 open reading frame 21	protein-coding
chr5.167514379.-	chr5	167514379	167514380	-	0	NA	"intron (NM_001122679, intron 7 of 28)"	AluSx3|SINE|Alu	204686	NM_001161662	23286	Hs.484047	NM_001161661	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA	WW and C2 domain containing 1	protein-coding
chr9.1044876.-	chr9	1044876	1044877	-	0	NA	Intergenic	Intergenic	5470	NM_006557	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr9.130532553.-	chr9	130532553	130532554	-	0	NA	"intron (NM_001252334, intron 1 of 11)"	"intron (NM_001252334, intron 1 of 11)"	-1095	NM_001252334	10044	Hs.306412	NM_001142531	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088	SH2 domain containing 3C	protein-coding
chr1.181058702.-	chr1	181058702	181058703	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1064	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr6.160985715.+	chr6	160985715	160985716	+	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	-53559	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr19.34227256.+	chr19	34227256	34227257	+	0	NA	"intron (NM_022467, intron 2 of 3)"	"intron (NM_022467, intron 2 of 3)"	51822	NM_022467	64377	Hs.165724	NM_001127895	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chr2.10424793.+	chr2	10424793	10424794	+	0	NA	Intergenic	Intergenic	-18237	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr20.62508362.-	chr20	62508362	62508363	-	0	NA	"intron (NR_045090, intron 4 of 6)"	"intron (NR_045090, intron 4 of 6)"	-11781	NM_001243892	7165	Hs.473296	NM_001243891	ENSG00000101150	TPD52L2	D54	tumor protein D52-like 2	protein-coding
chr16.4955156.+	chr16	4955156	4955157	+	0	NA	"intron (NM_002705, intron 2 of 21)"	"intron (NM_002705, intron 2 of 21)"	31980	NM_002705	5493	Hs.192233	NM_002705	ENSG00000118898	PPL	-	periplakin	protein-coding
chr5.3188228.-	chr5	3188228	3188229	-	0	NA	Intergenic	CpG	-347980	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr2.233477517.+	chr2	233477517	233477518	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6750	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr1.145400418.+	chr1	145400418	145400419	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12773	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr16.544888.-	chr16	544888	544889	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20038	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr4.106031870.+	chr4	106031870	106031871	+	0	NA	Intergenic	SVA_E|Other|Other	-35162	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chr8.141523833.-	chr8	141523833	141523834	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1752	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr19.19594711.-	chr19	19594711	19594712	-	0	NA	"intron (NM_017660, intron 2 of 11)"	AluY|SINE|Alu	-31758	NM_032037	83983	Hs.666780	NM_032037		TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
chr17.45349552.-	chr17	45349552	45349553	-	0	NA	"intron (NM_000212, intron 1 of 14)"	AluY|SINE|Alu	-18344	NM_000212	3690	Hs.218040	NM_000212	ENSG00000259207	ITGB3	BDPLT2|CD61|GP3A|GPIIIa|GT	"integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)"	protein-coding
chrX.53808345.+	chrX	53808345	53808346	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94648	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr19.50670080.+	chr19	50670080	50670081	+	0	NA	Intergenic	AluSg|SINE|Alu	-3542	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr17.34053863.+	chr17	34053863	34053864	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4816	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr7.36845307.+	chr7	36845307	36845308	+	0	NA	Intergenic	AluJb|SINE|Alu	-81153	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr8.41166082.-	chr8	41166082	41166083	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-908	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr5.17207810.+	chr5	17207810	17207811	+	0	NA	"intron (NR_027253, intron 1 of 2)"	AluSq10|SINE|Alu	-9122	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr20.61569566.+	chr20	61569566	61569567	+	0	NA	promoter-TSS (NM_033081)	promoter-TSS (NM_033081)	125	NM_017896	54994	Hs.353013	NM_017896		GID8	C20orf11|TWA1	GID complex subunit 8 homolog (S. cerevisiae)	protein-coding
chr9.137722649.-	chr9	137722649	137722650	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18566	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr17.810097.-	chr17	810097	810098	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42746	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr14.34924289.-	chr14	34924289	34924290	-	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	-7179	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr3.27705130.+	chr3	27705130	27705131	+	0	NA	Intergenic	AluSz|SINE|Alu	58655	NM_005442	8320	Hs.591663	NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
chr4.8546509.-	chr4	8546509	8546510	-	0	NA	Intergenic	Intergenic	35455	NR_045511	27201	Hs.740355	NM_080819		GPR78	-	G protein-coupled receptor 78	protein-coding
chr2.241363408.+	chr2	241363408	241363409	+	0	NA	Intergenic	Intergenic	-11707	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr17.72916051.-	chr17	72916051	72916052	-	0	NA	"exon (NM_173477, exon 2 of 3)"	"exon (NM_173477, exon 2 of 3)"	-3300	NM_173477	124590	Hs.376688	NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	Usher syndrome 1G (autosomal recessive)	protein-coding
chr19.49186315.-	chr19	49186315	49186316	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10051	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr6.46742420.-	chr6	46742420	46742421	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18674	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr1.181058711.+	chr1	181058711	181058712	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1073	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr1.8021855.-	chr1	8021855	8021856	-	0	NA	"intron (NM_007262, intron 1 of 6)"	CpG	-141	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr2.905801.-	chr2	905801	905802	-	0	NA	Intergenic	Intergenic	40753	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr1.197744844.-	chr1	197744844	197744845	-	0	NA	promoter-TSS (NM_001195216)	promoter-TSS (NM_001195216)	221	NM_144977	163486	Hs.743766	NM_001142795	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
chr7.1592408.-	chr7	1592408	1592409	-	0	NA	"intron (NM_001097620, intron 2 of 8)"	"intron (NM_001097620, intron 2 of 8)"	-3658	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr13.31735118.-	chr13	31735118	31735119	-	0	NA	"intron (NM_006644, intron 1 of 17)"	CpG	-999	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr8.11312298.+	chr8	11312298	11312299	+	0	NA	"intron (NM_053279, intron 1 of 2)"	"intron (NM_053279, intron 1 of 2)"	11978	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	"family with sequence similarity 167, member A"	protein-coding
chr20.61764542.+	chr20	61764542	61764543	+	0	NA	Intergenic	Intergenic	-30871	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr14.102576987.+	chr14	102576987	102576988	+	0	NA	"intron (NM_001017963, intron 1 of 11)"	AluY|SINE|Alu	-23475	NM_005348	3320	Hs.525600	NM_001017963	ENSG00000080824	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2	"heat shock protein 90kDa alpha (cytosolic), class A member 1"	protein-coding
chr1.40260003.-	chr1	40260003	40260004	-	0	NA	Intergenic	AluY|SINE|Alu	5470	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr5.172522326.-	chr5	172522326	172522327	-	0	NA	"intron (NM_153607, intron 4 of 8)"	AluY|SINE|Alu	-38971	NM_153607	153222	Hs.484195	NM_001168393	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
chr9.139071863.-	chr9	139071863	139071864	-	0	NA	Intergenic	Intergenic	-23141	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr12.52270334.-	chr12	52270334	52270335	-	0	NA	Intergenic	AluY|SINE|Alu	11459	NM_001130015	341405	Hs.433492	NM_001130015	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
chr1.224254728.+	chr1	224254728	224254729	+	0	NA	Intergenic	AluSz6|SINE|Alu	-47061	NR_049764	23219	Hs.64691	NM_001136115	ENSG00000143756	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
chr16.71814160.-	chr16	71814160	71814161	-	0	NA	"intron (NM_001030007, intron 2 of 23)"	AluSz|SINE|Alu	21770	NR_003059	692111		NR_003059		SNORD71	HBII-239|MIRN768|hsa-mir-768	"small nucleolar RNA, C/D box 71"	snoRNA
chr20.43150615.-	chr20	43150615	43150616	-	0	NA	"5' UTR (NM_006811, exon 1 of 10)"	"5' UTR (NM_006811, exon 1 of 10)"	-111	NM_006811	10955	Hs.696043	NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
chr19.48814162.-	chr19	48814162	48814163	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9170	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr4.186887781.-	chr4	186887781	186887782	-	0	NA	Intergenic	AluSx1|SINE|Alu	9911	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chrX.133976891.+	chrX	133976891	133976892	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35668	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr21.44478120.+	chr21	44478120	44478121	+	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	17920	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr12.57177820.-	chr12	57177820	57177821	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20712	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr12.31575307.-	chr12	31575307	31575308	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96148	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr6.24911274.-	chr6	24911274	24911275	-	0	NA	promoter-TSS (NM_014722)	promoter-TSS (NM_014722)	79	NM_014722	9750	Hs.559459	NM_014722	ENSG00000111913	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	"family with sequence similarity 65, member B"	protein-coding
chr14.105399775.-	chr14	105399775	105399776	-	0	NA	TTS (NM_138790)	TTS (NM_138790)	-8588	NM_138790	122618	Hs.407101	NM_138790	ENSG00000166428	PLD4	C14orf175	"phospholipase D family, member 4"	protein-coding
chr22.38510734.-	chr22	38510734	38510735	-	0	NA	"intron (NM_001004426, intron 13 of 15)"	"intron (NM_001004426, intron 13 of 15)"	4058	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr7.102089910.-	chr7	102089910	102089911	-	0	NA	"3' UTR (NM_001271818, exon 4 of 4)"	"3' UTR (NM_001271818, exon 4 of 4)"	-15411	NM_017621	54784	Hs.658598	NM_017621	ENSG00000160993	ALKBH4	ABH4	"alkB, alkylation repair homolog 4 (E. coli)"	protein-coding
chr2.10424724.+	chr2	10424724	10424725	+	0	NA	Intergenic	Intergenic	-18306	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr19.5686512.-	chr19	5686512	5686513	-	0	NA	"exon (NM_001267868, exon 5 of 9)"	"exon (NM_001267868, exon 5 of 9)"	3760	NM_033643	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
chr4.141013723.-	chr4	141013723	141013724	-	0	NA	"intron (NM_018717, intron 1 of 5)"	"intron (NM_018717, intron 1 of 5)"	-61510	NM_018717	55534	Hs.586165	NM_018717		MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
chr2.85981021.+	chr2	85981021	85981022	+	0	NA	"5' UTR (NM_032827, exon 1 of 3)"	"5' UTR (NM_032827, exon 1 of 3)"	112	NM_032827	84913	Hs.135569	NM_032827		ATOH8	HATH6|bHLHa21	atonal homolog 8 (Drosophila)	protein-coding
chr17.27407831.+	chr17	27407831	27407832	+	0	NA	"intron (NM_203318, intron 40 of 40)"	CpG	-5204	NM_004740	9220	Hs.743384	NM_004740		TIAF1	MAJN|SPR210	TGFB1-induced anti-apoptotic factor 1	protein-coding
chr1.220909478.+	chr1	220909478	220909479	+	0	NA	Intergenic	AluSc|SINE|Alu	-12198	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr8.144392669.-	chr8	144392669	144392670	-	0	NA	"intron (NM_001258446, intron 13 of 14)"	"intron (NM_001258446, intron 13 of 14)"	-19110	NM_030895	79943	Hs.512740	NM_030895		ZNF696	-	zinc finger protein 696	protein-coding
chr2.90482939.-	chr2	90482939	90482940	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365036	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr6.135685299.+	chr6	135685299	135685300	+	0	NA	"intron (NM_001134831, intron 23 of 28)"	SVA_D|Other|Other	133604	NM_017651	54806	Hs.386684	NM_001134830	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
chr2.71559434.-	chr2	71559434	71559435	-	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	-549	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr3.29051443.-	chr3	29051443	29051444	-	0	NA	Intergenic	AluSc8|SINE|Alu	271360	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr17.37146002.+	chr17	37146002	37146003	+	0	NA	Intergenic	AluY|SINE|Alu	-22347	NM_001008777	494188	Hs.549536	NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
chr9.11185.-	chr9	11185	11186	-	0	NA	promoter-TSS (NR_051986)	promoter-TSS (NR_051986)	802	NR_051986	100287596	Hs.719844	NR_051986		DDX11L5	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5	pseudo
chr19.1818379.-	chr19	1818379	1818380	-	0	NA	"intron (NM_020695, intron 10 of 15)"	"intron (NM_020695, intron 10 of 15)"	2142	NR_031730	100302210		NR_031730		MIR1909	MIRN1909|hsa-mir-1909	microRNA 1909	miscRNA
chr1.175385882.+	chr1	175385882	175385883	+	0	NA	"intron (NM_003285, intron 2 of 22)"	AluY|SINE|Alu	-223653	NM_001162894	9674	Hs.518138	NM_001162893	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
chr22.47046506.+	chr22	47046506	47046507	+	0	NA	"intron (NM_015124, intron 2 of 17)"	"intron (NM_015124, intron 2 of 17)"	23848	NM_015124	23151	Hs.475150	NM_015124	ENSG00000075240	GRAMD4	DIP|dA59H18.1|dJ439F8.1	GRAM domain containing 4	protein-coding
chr1.43855612.-	chr1	43855612	43855613	-	0	NA	promoter-TSS (NM_015284)	promoter-TSS (NM_015284)	-56	NM_015284	23334	Hs.643560	NM_015284	ENSG00000198198	SZT2	C1orf84|KIAA0467|RP11-506B15.3|SZT2A|SZT2B	seizure threshold 2 homolog (mouse)	protein-coding
chr3.49047724.+	chr3	49047724	49047725	+	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	3087	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr1.164811094.-	chr1	164811094	164811095	-	0	NA	"intron (NM_001204963, intron 8 of 8)"	"intron (NM_001204963, intron 8 of 8)"	67216	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	miscRNA
chr2.162164930.-	chr2	162164930	162164931	-	0	NA	"5' UTR (NM_005805, exon 1 of 12)"	"5' UTR (NM_005805, exon 1 of 12)"	-144	NM_005805	10213	Hs.740477	NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 14"	protein-coding
chr17.17398324.-	chr17	17398324	17398325	-	0	NA	"3' UTR (NM_016084, exon 2 of 2)"	"3' UTR (NM_016084, exon 2 of 2)"	-1385	NM_016084	51655	Hs.25829	NM_001199989	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	"RAS, dexamethasone-induced 1"	protein-coding
chr19.644324.-	chr19	644324	644325	-	0	NA	TTS (NM_020637)	TTS (NM_020637)	-4398	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr16.85793475.+	chr16	85793475	85793476	+	0	NA	Intergenic	Intergenic	-8786	NM_206967	404550	Hs.461655	NM_206967	ENSG00000154102	C16orf74	-	chromosome 16 open reading frame 74	protein-coding
chr19.46914697.+	chr19	46914697	46914698	+	0	NA	"exon (NM_032040, exon 1 of 1)"	"exon (NM_032040, exon 1 of 1)"	2222	NM_032040	83987	Hs.744359	NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
chr1.33896370.+	chr1	33896370	33896371	+	0	NA	Intergenic	CpG	-41862	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
chr9.128986122.+	chr9	128986122	128986123	+	0	NA	Intergenic	Intergenic	-103001	NM_001011703	89853	Hs.162659	NM_001011703	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
chr9.38829838.+	chr9	38829838	38829839	+	0	NA	Intergenic	AluY|SINE|Alu	208753	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr5.133831565.-	chr5	133831565	133831566	-	0	NA	Intergenic	AluY|SINE|Alu	30233	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr3.36250755.+	chr3	36250755	36250756	+	0	NA	Intergenic	AluSx|SINE|Alu	-171342	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr16.28074760.+	chr16	28074760	28074761	+	0	NA	promoter-TSS (NM_001109763)	promoter-TSS (NM_001109763)	70	NM_001109763	146395	Hs.91910	NM_001109763	ENSG00000169181	GSG1L	PRO19651	GSG1-like	protein-coding
chr1.55505946.-	chr1	55505946	55505947	-	0	NA	"intron (NM_174936, intron 1 of 11)"	CpG	-797	NM_174936	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
chr4.154344510.-	chr4	154344510	154344511	-	0	NA	Intergenic	AluSg4|SINE|Alu	42988	NM_001131007	23240	Hs.732450	NM_001131007	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
chr14.102109455.-	chr14	102109455	102109456	-	0	NA	Intergenic	AluY|SINE|Alu	-81767	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr5.170687212.-	chr5	170687212	170687213	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49076	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr13.67135414.-	chr13	67135414	67135415	-	0	NA	"intron (NM_203487, intron 4 of 4)"	LTR12C|LTR|ERV1	263887	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr15.56917200.+	chr15	56917200	56917201	+	0	NA	Intergenic	AluSq2|SINE|Alu	108587	NM_017661	54816	Hs.511477	NM_001002843	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
chr6.163835956.-	chr6	163835956	163835957	-	0	NA	promoter-TSS (NR_037593)	promoter-TSS (NR_037593)	-281	NM_006775	9444	Hs.510324	NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	"QKI, KH domain containing, RNA binding"	protein-coding
chr22.24237211.+	chr22	24237211	24237212	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	646	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr20.61763740.-	chr20	61763740	61763741	-	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	30069	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr3.23563722.-	chr3	23563722	23563723	-	0	NA	"intron (NM_152653, intron 4 of 5)"	AluY|SINE|Alu	-188096	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	miscRNA
chr8.144671242.-	chr8	144671242	144671243	-	0	NA	"exon (NM_001130053, exon 3 of 10)"	"exon (NM_001130053, exon 3 of 10)"	-8316	NM_001130057	1936	Hs.703306	NM_001130053	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding
chr2.86777034.+	chr2	86777034	86777035	+	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	13586	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr2.36958613.+	chr2	36958613	36958614	+	0	NA	"intron (NM_053276, intron 3 of 15)"	AluSc|SINE|Alu	34780	NM_001177969	5212	Hs.137415	NM_001177969	ENSG00000205221	VIT	-	vitrin	protein-coding
chr16.4835193.+	chr16	4835193	4835194	+	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	-3205	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr14.21493786.-	chr14	21493786	21493787	-	0	NA	promoter-TSS (NM_201540)	promoter-TSS (NM_201540)	-149	NM_201535	57447	Hs.525205	NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
chr3.139653992.+	chr3	139653992	139653993	+	0	NA	promoter-TSS (NM_022131)	promoter-TSS (NM_022131)	-35	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
chr10.8150562.+	chr10	8150562	8150563	+	0	NA	Intergenic	AluY|SINE|Alu	53895	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr2.136403852.+	chr2	136403852	136403853	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19115	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr5.68438989.-	chr5	68438989	68438990	-	0	NA	Intergenic	AluY|SINE|Alu	23848	NM_031966	891	Hs.23960	NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
chr1.151573457.-	chr1	151573457	151573458	-	0	NA	Intergenic	SVA_E|Other|Other	11205	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr14.77227727.-	chr14	77227727	77227728	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	508	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr7.43929929.-	chr7	43929929	43929930	-	0	NA	"intron (NM_001077664, intron 1 of 5)"	AluY|SINE|Alu	-16302	NM_001204871	100534592	Hs.663312	NM_001204871		URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
chr8.86747632.-	chr8	86747632	86747633	-	0	NA	promoter-TSS (NR_003594).4	promoter-TSS (NR_003594).4	895	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr12.120856940.+	chr12	120856940	120856941	+	0	NA	Intergenic	AluSz|SINE|Alu	-18953	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr3.50311286.+	chr3	50311286	50311287	+	0	NA	"intron (NM_001005914, intron 10 of 17)"	CpG-18540	-5232	NM_153215	132228	Hs.315177	NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine-rich single-pass membrane protein 2	protein-coding
chr16.4065735.-	chr16	4065735	4065736	-	0	NA	"intron (NM_001116, intron 2 of 10)"	AluSx1|SINE|Alu	-100451	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr11.62551829.-	chr11	62551829	62551830	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3045	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr4.185174260.+	chr4	185174260	185174261	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35146	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr9.38829818.-	chr9	38829818	38829819	-	0	NA	Intergenic	AluY|SINE|Alu	-208733	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr8.75512748.+	chr8	75512748	75512749	+	0	NA	"intron (NR_033830, intron 1 of 5)"	AluSp|SINE|Alu	647	NR_033830	441355	Hs.647162	NR_033830	ENSG00000254349	FLJ39080	-	uncharacterized LOC441355	miscRNA
chr10.324390.-	chr10	324390	324391	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98456	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr16.1358885.+	chr16	1358885	1358886	+	0	NA	promoter-TSS (NM_003345)	promoter-TSS (NM_003345)	-269	NM_194260	7329	Hs.302903	NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin-conjugating enzyme E2I	protein-coding
chr1.156310243.-	chr1	156310243	156310244	-	0	NA	"intron (NM_144627, intron 2 of 3)"	AluY|SINE|Alu	2037	NR_036565	7203	Hs.491494	NM_001008800	ENSG00000163468	CCT3	CCT-gamma|CCTG|PIG48|TCP-1-gamma|TRIC5	"chaperonin containing TCP1, subunit 3 (gamma)"	protein-coding
chr9.139119883.-	chr9	139119883	139119884	-	0	NA	"intron (NM_181701, intron 1 of 11)"	"intron (NM_181701, intron 1 of 11)"	-17804	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin Q6 sulfhydryl oxidase 2	protein-coding
chr6.33569029.-	chr6	33569029	33569030	-	0	NA	Intergenic	AluSp|SINE|Alu	7914	NR_027908	401253	Hs.520075	NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	miscRNA
chr17.77198168.+	chr17	77198168	77198169	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	127149	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr2.242500500.-	chr2	242500500	242500501	-	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	1942	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chrX.53125817.+	chrX	53125817	53125818	+	0	NA	Intergenic	AluJb|SINE|Alu	14275	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr1.197418598.+	chr1	197418598	197418599	+	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	181264	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr18.9334975.-	chr18	9334975	9334976	-	0	NA	"intron (NM_020648, intron 1 of 4)"	CpG	-210	NM_020648	57045	Hs.514685	NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation homolog 1 (Drosophila)	protein-coding
chrX.22158740.+	chrX	22158740	22158741	+	0	NA	"intron (NM_000444, intron 12 of 21)"	AluSz6|SINE|Alu	32360	NR_046639	100873942	Hs.633194	NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	miscRNA
chr2.232078212.-	chr2	232078212	232078213	-	0	NA	"intron (NM_025139, intron 3 of 20)"	AluSg|SINE|Alu	-14918	NM_001271466	80210	Hs.471610	NM_001271466	ENSG00000135931	ARMC9	ARM|KU-MEL-1	armadillo repeat containing 9	protein-coding
chr8.99439626.-	chr8	99439626	99439627	-	0	NA	"intron (NM_020697, intron 1 of 1)"	CpG	-376	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	"potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2"	protein-coding
chr22.44600846.+	chr22	44600846	44600847	+	0	NA	"intron (NM_022141, intron 12 of 13)"	"intron (NM_022141, intron 12 of 13)"	23589	NM_001137606	64098	Hs.666944	NM_001137606	ENSG00000138964	PARVG	-	"parvin, gamma"	protein-coding
chr17.47735120.-	chr17	47735120	47735121	-	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	-20405	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr9.36860048.-	chr9	36860048	36860049	-	0	NA	"intron (NM_016734, intron 8 of 9)"	"intron (NM_016734, intron 8 of 9)"	-4257	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr5.3188214.+	chr5	3188214	3188215	+	0	NA	Intergenic	CpG	347994	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr18.909193.-	chr18	909193	909194	-	0	NA	"intron (NM_001117, intron 3 of 3)"	CpG-11552	-3996	NM_001117	116	Hs.727476	NM_001099733	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
chr18.11959858.+	chr18	11959858	11959859	+	0	NA	Intergenic	SVA_D|Other|Other	-21569	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr7.157129512.+	chr7	157129512	157129513	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-198	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr10.77156182.-	chr10	77156182	77156183	-	0	NA	Intergenic	CpG	5104	NR_024421	100131213	Hs.534598	NR_024421		ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	miscRNA
chr2.171793702.-	chr2	171793702	171793703	-	0	NA	"intron (NM_015530, intron 1 of 9)"	AluSx|SINE|Alu	-8666	NM_015530	26003	Hs.431317	NM_001201428	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	"golgi reassembly stacking protein 2, 55kDa"	protein-coding
chr12.130340697.+	chr12	130340697	130340698	+	0	NA	"intron (NM_133448, intron 1 of 8)"	CpG	47515	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr6.85476326.+	chr6	85476326	85476327	+	0	NA	Intergenic	Intergenic	-2372	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr4.178730014.+	chr4	178730014	178730015	+	0	NA	"intron (NR_028342, intron 2 of 5)"	AluY|SINE|Alu	80103	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LOC285501	-	uncharacterized LOC285501	miscRNA
chr11.68079722.-	chr11	68079722	68079723	-	0	NA	promoter-TSS (NM_002335)	promoter-TSS (NM_002335)	386	NM_002335	4041	Hs.6347	NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
chr17.810065.+	chr17	810065	810066	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42714	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr1.220909471.+	chr1	220909471	220909472	+	0	NA	Intergenic	AluSc|SINE|Alu	-12205	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr11.19881573.+	chr11	19881573	19881574	+	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	-99944	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr11.17035274.+	chr11	17035274	17035275	+	0	NA	"intron (NM_175058, intron 3 of 22)"	CpG	689	NM_175058	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	"pleckstrin homology domain containing, family A member 7"	protein-coding
chr4.166248581.-	chr4	166248581	166248582	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	237	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr10.28651000.-	chr10	28651000	28651001	-	0	NA	Intergenic	AluY|SINE|Alu	79933	NM_173496	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	"membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)"	protein-coding
chr5.37382635.+	chr5	37382635	37382636	+	0	NA	"intron (NM_018034, intron 3 of 17)"	AluSc|SINE|Alu	3223	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
chr1.21758994.+	chr1	21758994	21758995	+	0	NA	Intergenic	AluSx|SINE|Alu	-7589	NR_046176	84224	Hs.325422	NM_001256416	ENSG00000142794	NBPF3	AE2	"neuroblastoma breakpoint family, member 3"	protein-coding
chr19.34394375.-	chr19	34394375	34394376	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106624	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr5.17207877.-	chr5	17207877	17207878	-	0	NA	"intron (NR_027253, intron 1 of 2)"	"intron (NR_027253, intron 1 of 2)"	9055	NM_001271606	10409	Hs.744329	NM_001271606	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	"brain abundant, membrane attached signal protein 1"	protein-coding
chr19.38836207.+	chr19	38836207	38836208	+	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	9764	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr17.27717842.+	chr17	27717842	27717843	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-101	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr2.173941042.-	chr2	173941042	173941043	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-477	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr3.28951354.+	chr3	28951354	28951355	+	0	NA	Intergenic	AluY|SINE|Alu	334585	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr9.139775656.+	chr9	139775656	139775657	+	0	NA	Intergenic	AluSp|SINE|Alu	-5309	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr13.59346937.-	chr13	59346937	59346938	-	0	NA	Intergenic	AluY|SINE|Alu	-1141148	NM_001040429	27253	Hs.106511	NM_001040429	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
chr18.46969440.+	chr18	46969440	46969441	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17639	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr16.1332203.-	chr16	1332203	1332204	-	0	NA	Intergenic	AluSx|SINE|Alu	-25930	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr2.43898405.-	chr2	43898405	43898406	-	0	NA	"intron (NM_172069, intron 2 of 29)"	AluSq10|SINE|Alu	-5056	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
chrX.144902913.-	chrX	144902913	144902914	-	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	-47	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr1.3560968.+	chr1	3560968	3560969	+	0	NA	"intron (NM_017818, intron 3 of 11)"	CpG	5703	NM_017818	49856	Hs.31714	NM_017818	ENSG00000116213	WRAP73	WDR8	"WD repeat containing, antisense to TP73"	protein-coding
chr3.20353461.-	chr3	20353461	20353462	-	0	NA	Intergenic	AluYk4|SINE|Alu	125737	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr22.32868807.+	chr22	32868807	32868808	+	0	NA	Intergenic	AluY|SINE|Alu	-1900	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr8.23131071.-	chr8	23131071	23131072	-	0	NA	Intergenic	AluSc8|SINE|Alu	14541	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr17.65335489.-	chr17	65335489	65335490	-	0	NA	Intergenic	AluSx|SINE|Alu	-27232	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr19.2984340.+	chr19	2984340	2984341	+	0	NA	"intron (NM_024760, intron 4 of 15)"	"intron (NM_024760, intron 4 of 15)"	6804	NM_001143986	79816	Hs.334507	NM_001143986	ENSG00000104953	TLE6	GRG6	"transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)"	protein-coding
chr3.53225171.-	chr3	53225171	53225172	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29948	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr20.62127651.-	chr20	62127651	62127652	-	0	NA	"intron (NM_001958, intron 2 of 7)"	CpG	-3017	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
chr9.120507360.-	chr9	120507360	120507361	-	0	NA	Intergenic	CpG	-40907	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr16.22675565.-	chr16	22675565	22675566	-	0	NA	Intergenic	AluJr|SINE|Alu	54038	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr1.179067188.+	chr1	179067188	179067189	+	0	NA	Intergenic	LTR8A|LTR|ERV1	16076	NM_022371	64222	Hs.584957	NM_022371		TOR3A	ADIR|ADIR2	"torsin family 3, member A"	protein-coding
chr14.82366838.-	chr14	82366838	82366839	-	0	NA	Intergenic	AluY|SINE|Alu	366633	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr5.694055.+	chr5	694055	694056	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-545	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr20.5018163.-	chr20	5018163	5018164	-	0	NA	Intergenic	AluSx|SINE|Alu	27224	NM_203327	9962	Hs.516866	NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	"solute carrier family 23 (nucleobase transporters), member 2"	protein-coding
chr14.105134393.-	chr14	105134393	105134394	-	0	NA	Intergenic	AluSz|SINE|Alu	-9693	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr17.21825600.-	chr17	21825600	21825601	-	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	-230	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr5.21491075.-	chr5	21491075	21491076	-	0	NA	"intron (NR_027026, intron 3 of 4)"	AluSc8|SINE|Alu	-31486	NR_027028	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr9.134449862.-	chr9	134449862	134449863	-	0	NA	Intergenic	AluSx1|SINE|Alu	43200	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr3.195370345.+	chr3	195370345	195370346	+	0	NA	Intergenic	L2a|LINE|L2	-14565	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2"	pseudo
chr12.120554868.-	chr12	120554868	120554869	-	0	NA	promoter-TSS (NM_006861)	promoter-TSS (NM_006861)	225	NM_006861	11021	Hs.524788	NM_001167606	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	"RAB35, member RAS oncogene family"	protein-coding
chr5.133831539.+	chr5	133831539	133831540	+	0	NA	Intergenic	AluY|SINE|Alu	-30259	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr3.122695654.-	chr3	122695654	122695655	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	673	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr22.39040983.-	chr22	39040983	39040984	-	0	NA	"intron (NM_001013647, intron 3 of 16)"	AluSx3|SINE|Alu	-11651	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	"family with sequence similarity 227, member A"	protein-coding
chr13.35001411.+	chr13	35001411	35001412	+	0	NA	Intergenic	AluSq2|SINE|Alu	213411	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr2.173389872.-	chr2	173389872	173389873	-	0	NA	Intergenic	Intergenic	30907	NM_002610	5163	Hs.470633	NM_002610		PDK1	-	"pyruvate dehydrogenase kinase, isozyme 1"	protein-coding
chr18.11086397.+	chr18	11086397	11086398	+	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	62364	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr3.82554665.-	chr3	82554665	82554666	-	0	NA	Intergenic	MER52A|LTR|ERV1	743715	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr5.112263722.+	chr5	112263722	112263723	+	0	NA	Intergenic	AluY|SINE|Alu	-5691	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chrX.53111661.-	chrX	53111661	53111662	-	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	-119	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr12.132674838.+	chr12	132674838	132674839	+	0	NA	Intergenic	CpG	15735	NM_021808	50614	Hs.658249	NM_001122636	ENSG00000182870	GALNT9	GALNAC-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)	protein-coding
chr12.75694249.-	chr12	75694249	75694250	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29587	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr19.2432910.+	chr19	2432910	2432911	+	0	NA	"intron (NM_032737, intron 8 of 11)"	CpG	-5035	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr14.78273460.-	chr14	78273460	78273461	-	0	NA	"intron (NM_001142545, intron 1 of 9)"	AluYa5|SINE|Alu	-7034	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr19.1115951.+	chr19	1115951	1115952	+	0	NA	"intron (NM_014963, intron 17 of 31)"	"intron (NM_014963, intron 17 of 31)"	11302	NM_001039848	2879	Hs.433951	NM_001039847	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
chr1.107439607.+	chr1	107439607	107439608	+	0	NA	Intergenic	AluY|SINE|Alu	-159660	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
chr19.35225132.-	chr19	35225132	35225133	-	0	NA	promoter-TSS (NM_001029997)	promoter-TSS (NM_001029997)	348	NM_001029997	339318	Hs.720472	NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
chr17.7561698.-	chr17	7561698	7561699	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7444	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr7.936481.-	chr7	936481	936482	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20290	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr6.167607758.-	chr6	167607758	167607759	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23677	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr11.133763770.+	chr11	133763770	133763771	+	0	NA	Intergenic	AluY|SINE|Alu	4706	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr21.47838766.-	chr21	47838766	47838767	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40096	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr17.35829167.-	chr17	35829167	35829168	-	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	20784	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chr21.45197186.-	chr21	45197186	45197187	-	0	NA	promoter-TSS (NM_000100)	promoter-TSS (NM_000100)	930	NM_000100	1476	Hs.695	NM_000100		CSTB	CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B (stefin B)	protein-coding
chr3.36494746.+	chr3	36494746	36494747	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72649	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr12.97510595.+	chr12	97510595	97510596	+	0	NA	Intergenic	AluY|SINE|Alu	209351	NM_001135175	121441	Hs.270084	NM_001135175	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	"neural precursor cell expressed, developmentally down-regulated 1"	protein-coding
chr14.77227770.-	chr14	77227770	77227771	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	465	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr10.134350522.-	chr10	134350522	134350523	-	0	NA	promoter-TSS (NM_005539)	promoter-TSS (NM_005539)	831	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr17.75012562.+	chr17	75012562	75012563	+	0	NA	Intergenic	AluSx1|SINE|Alu	-72163	NM_001204408	6397	Hs.464184	NM_001039573	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
chr1.217314035.+	chr1	217314035	217314036	+	0	NA	Intergenic	Intergenic	-2938	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr2.102559043.+	chr2	102559043	102559044	+	0	NA	Intergenic	AluY|SINE|Alu	-49263	NM_004633	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	"interleukin 1 receptor, type II"	protein-coding
chr17.2721878.+	chr17	2721878	2721879	+	0	NA	"intron (NM_015085, intron 2 of 24)"	AluSz|SINE|Alu	22146	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chrX.39680372.-	chrX	39680372	39680373	-	0	NA	Intergenic	CpG	-276347	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr6.159515341.+	chr6	159515341	159515342	+	0	NA	Intergenic	Intergenic	-49157	NM_054114	117289	Hs.529984	NM_054114	ENSG00000164691	TAGAP	ARHGAP47|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
chr15.74511239.-	chr15	74511239	74511240	-	0	NA	Intergenic	Intergenic	9193	NM_001199040	64220	Hs.24553	NM_001142617	ENSG00000137868	STRA6	MCOPCB8|MCOPS9	stimulated by retinoic acid 6	protein-coding
chr7.5344786.+	chr7	5344786	5344787	+	0	NA	Intergenic	Intergenic	22225	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr10.58121071.+	chr10	58121071	58121072	+	0	NA	promoter-TSS (NM_032997)	promoter-TSS (NM_032997)	-37	NM_001005413	11130	Hs.591363	NM_001005413	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|ZWINT1	"ZW10 interactor, kinetochore protein"	protein-coding
chr15.57662568.-	chr15	57662568	57662569	-	0	NA	Intergenic	AluSx|SINE|Alu	6135	NM_032866	84952	Hs.734541	NM_001252335	ENSG00000128849	CGNL1	JACOP	cingulin-like 1	protein-coding
chr20.45936012.-	chr20	45936012	45936013	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11234	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr7.56143774.-	chr7	56143774	56143775	-	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	-11857	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr11.69189609.+	chr11	69189609	69189610	+	0	NA	Intergenic	Intergenic	127987	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr17.80033558.+	chr17	80033558	80033559	+	0	NA	Intergenic	AluY|SINE|Alu	-9861	NM_022156	64118	Hs.741994	NM_022156		DUS1L	DUS1|PP3111	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding
chr6.149638365.-	chr6	149638365	149638366	-	0	NA	Intergenic	CpG	1071	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr22.43238159.+	chr22	43238159	43238160	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15249	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr14.90254564.+	chr14	90254564	90254565	+	0	NA	Intergenic	AluSx|SINE|Alu	166525	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr2.1554777.+	chr2	1554777	1554778	+	0	NA	Intergenic	Intergenic	136597	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr12.96314660.-	chr12	96314660	96314661	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21768	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr1.183670799.-	chr1	183670799	183670800	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48351	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr16.88387017.+	chr16	88387017	88387018	+	0	NA	Intergenic	L2b|LINE|L2	-106862	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr2.32738993.-	chr2	32738993	32738994	-	0	NA	"intron (NM_016252, intron 54 of 73)"	AluJb|SINE|Alu	18227	NR_030285	693143		NR_030285		MIR558	MIRN558|hsa-mir-558	microRNA 558	miscRNA
chr6.89378017.-	chr6	89378017	89378018	-	0	NA	"intron (NM_003800, intron 14 of 15)"	HERVE-int|LTR|ERV1	-295331	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr2.137180634.+	chr2	137180634	137180635	+	0	NA	Intergenic	AluSq2|SINE|Alu	-304909	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr22.19774482.+	chr22	19774482	19774483	+	0	NA	Intergenic	Intergenic	30256	NM_005992	6899	Hs.173984	NM_005992	ENSG00000184058	TBX1	CAFS|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCFS	T-box 1	protein-coding
chr13.53420090.+	chr13	53420090	53420091	+	0	NA	"exon (NM_002590, exon 1 of 3)"	"exon (NM_002590, exon 1 of 3)"	2685	NM_032949	5100	Hs.19492	NM_002590	ENSG00000136099	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
chr2.101245805.+	chr2	101245805	101245806	+	0	NA	Intergenic	Intergenic	66387	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chrX.112187613.-	chrX	112187613	112187614	-	0	NA	Intergenic	AluY|SINE|Alu	103570	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr17.42082672.+	chr17	42082672	42082673	+	0	NA	promoter-TSS (NM_004160)	promoter-TSS (NM_004160)	640	NM_153006	162417	Hs.8876	NM_153006	ENSG00000161653	NAGS	AGAS|ARGA	N-acetylglutamate synthase	protein-coding
chr2.90481132.+	chr2	90481132	90481133	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	1366843	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr12.105389755.+	chr12	105389755	105389756	+	0	NA	Intergenic	AluY|SINE|Alu	9657	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chrX.48952516.-	chrX	48952516	48952517	-	0	NA	"intron (NM_007075, intron 2 of 11)"	AluY|SINE|Alu	-5543	NM_007075	11152	Hs.632807	NM_001029896	ENSG00000196998	WDR45	NBIA4|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
chr21.11107114.+	chr21	11107114	11107115	+	0	NA	Intergenic	CpG	-8177	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr11.67351080.-	chr11	67351080	67351081	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-14	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr17.810080.-	chr17	810080	810081	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42729	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr21.47403498.-	chr21	47403498	47403499	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1835	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr3.11952880.-	chr3	11952880	11952881	-	0	NA	Intergenic	Intergenic	64528	NM_138807	132001	Hs.475472	NM_138807	ENSG00000144559	TAMM41	C3orf31|RAM41|TAM41	"TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)"	protein-coding
chr5.114712425.-	chr5	114712425	114712426	-	0	NA	Intergenic	AluYc3|SINE|Alu	79967	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr4.96098062.+	chr4	96098062	96098063	+	0	NA	"intron (NM_003728, intron 14 of 15)"	L1PA3|LINE|L1	85420	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|CDw293	"bone morphogenetic protein receptor, type IB"	protein-coding
chr3.164852021.-	chr3	164852021	164852022	-	0	NA	Intergenic	AluY|SINE|Alu	55738	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chrX.9982820.+	chrX	9982820	9982821	+	0	NA	promoter-TSS (NM_015691)	promoter-TSS (NM_015691)	-975	NM_015691	55841	Hs.527524	NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
chr15.60400824.+	chr15	60400824	60400825	+	0	NA	Intergenic	AluSx3|SINE|Alu	104403	NM_012182	27023	Hs.734475	NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
chr18.72923595.-	chr18	72923595	72923596	-	0	NA	"intron (NM_005786, intron 1 of 1)"	CpG	-885	NM_005786	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
chr1.109995480.-	chr1	109995480	109995481	-	0	NA	Intergenic	AluY|SINE|Alu	13620	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr22.50745932.+	chr22	50745932	50745933	+	0	NA	promoter-TSS (NM_012401)	promoter-TSS (NM_012401)	69	NM_012401	23654	Hs.736016	NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3	plexin B2	protein-coding
chrX.54269608.-	chrX	54269608	54269609	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59894	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr22.51001344.-	chr22	51001344	51001345	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	16	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.149646778.+	chr1	149646778	149646779	+	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	70325	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr15.83631302.+	chr15	83631302	83631303	+	0	NA	Intergenic	AluSx|SINE|Alu	-9826	NM_199330	9455	Hs.578443	NM_004839	ENSG00000103942	HOMER2	ACPD|CPD|HOMER-2|VESL-2	homer homolog 2 (Drosophila)	protein-coding
chr6.160985675.-	chr6	160985675	160985676	-	0	NA	"intron (NM_005577, intron 29 of 39)"	L1PA5|LINE|L1	53519	NR_028093	80350	Hs.654503	NM_024492	ENSG00000213071	LPAL2	APOA2|APOAL|APOARGC|RP11-72O9.2	"lipoprotein, Lp(a)-like 2, pseudogene"	pseudo
chr22.30279692.+	chr22	30279692	30279693	+	0	NA	"intron (NM_153050, intron 1 of 19)"	CpG	534	NM_021090	8897	Hs.474536	NM_021090	ENSG00000100330	MTMR3	FYVE-DSP1|ZFYVE10	myotubularin related protein 3	protein-coding
chr16.17617285.-	chr16	17617285	17617286	-	0	NA	Intergenic	AluSz|SINE|Alu	52547	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chrM.16345.+	chrM	16345	16346	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.45348437.+	chr3	45348437	45348438	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80623	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr2.205410086.-	chr2	205410086	205410087	-	0	NA	promoter-TSS (NM_057177)	promoter-TSS (NM_057177)	430	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 partitioning defective 3 homolog B (C. elegans)	protein-coding
chr17.48133779.+	chr17	48133779	48133780	+	0	NA	promoter-TSS (NR_038230)	promoter-TSS (NR_038230)	439	NM_002204	3675	Hs.265829	NM_002204	ENSG00000005884	ITGA3	CD49C|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a	"integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)"	protein-coding
chr7.157234967.-	chr7	157234967	157234968	-	0	NA	Intergenic	CpG	-105256	NM_058246	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr12.65563460.+	chr12	65563460	65563461	+	0	NA	"exon (NM_014319, exon 1 of 13)"	"exon (NM_014319, exon 1 of 13)"	109	NM_001167614	23592	Hs.744150	NM_001167614	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
chr19.35418173.-	chr19	35418173	35418174	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-366	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr17.1150676.-	chr17	1150676	1150677	-	0	NA	Intergenic	SVA_D|Other|Other	23182	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	"basic helix-loop-helix family, member a9"	protein-coding
chr1.78230556.-	chr1	78230556	78230557	-	0	NA	Intergenic	AluSz|SINE|Alu	4992	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr21.28337955.+	chr21	28337955	28337956	+	0	NA	"exon (NM_007038, exon 1 of 8)"	"exon (NM_007038, exon 1 of 8)"	1484	NM_007038	11096	Hs.58324	NM_007038	ENSG00000154736	ADAMTS5	ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2	"ADAM metallopeptidase with thrombospondin type 1 motif, 5"	protein-coding
chr15.76627330.+	chr15	76627330	76627331	+	0	NA	Intergenic	AluSg|SINE|Alu	-1817	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr7.23550857.+	chr7	23550857	23550858	+	0	NA	"intron (NM_013293, intron 4 of 7)"	AluY|SINE|Alu	20799	NM_013293	29896	Hs.445652	NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog (Drosophila)	protein-coding
chr18.2888631.-	chr18	2888631	2888632	-	0	NA	"intron (NM_032048, intron 3 of 7)"	AluY|SINE|Alu	-41603	NM_032048	84034	Hs.532815	NM_032048		EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
chr16.31368065.-	chr16	31368065	31368066	-	0	NA	"intron (NM_000887, intron 3 of 29)"	"intron (NM_000887, intron 3 of 29)"	-1556	NM_000887	3687	Hs.248472	NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	"integrin, alpha X (complement component 3 receptor 4 subunit)"	protein-coding
chr6.18239280.-	chr6	18239280	18239281	-	0	NA	"intron (NM_001134709, intron 6 of 9)"	AluSp|SINE|Alu	-25519	NM_003472	7913	Hs.484813	NM_001134709	ENSG00000124795	DEK	D6S231E	DEK oncogene	protein-coding
chr3.125203803.-	chr3	125203803	125203804	-	0	NA	"intron (NR_073435, intron 5 of 12)"	AluSx1|SINE|Alu	-35255	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr12.6167282.-	chr12	6167282	6167283	-	0	NA	"intron (NM_000552, intron 13 of 51)"	"intron (NM_000552, intron 13 of 51)"	-66554	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
chr17.20588557.-	chr17	20588557	20588558	-	0	NA	Intergenic	SVA_D|Other|Other	27202	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	"ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene"	pseudo
chr9.10974552.+	chr9	10974552	10974553	+	0	NA	Intergenic	L1PBa|LINE|L1	-361829	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr1.3087119.-	chr1	3087119	3087120	-	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-42580	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr2.208475919.+	chr2	208475919	208475920	+	0	NA	"3' UTR (NM_145280, exon 4 of 4)"	"3' UTR (NM_145280, exon 4 of 4)"	13777	NM_145280	151194	Hs.664764	NM_001127395	ENSG00000144401	METTL21A	FAM119A|HCA557b	methyltransferase like 21A	protein-coding
chr11.915956.-	chr11	915956	915957	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	898	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr1.183892669.-	chr1	183892669	183892670	-	0	NA	"intron (NM_015149, intron 18 of 18)"	"intron (NM_015149, intron 18 of 18)"	-114194	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr6.126100325.-	chr6	126100325	126100326	-	0	NA	Intergenic	AluY|SINE|Alu	1982	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr13.105222487.-	chr13	105222487	105222488	-	0	NA	Intergenic	AluY|SINE|Alu	895729	NM_001161814	267012	Hs.381382	NM_001161812	ENSG00000182346	DAOA	G72|LG72|SG72	D-amino acid oxidase activator	protein-coding
chr17.70585306.-	chr17	70585306	70585307	-	0	NA	"intron (NR_036488, intron 1 of 3)"	"intron (NR_036488, intron 1 of 3)"	-3637	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	-	long intergenic non-protein coding RNA 673	miscRNA
chr2.220276965.-	chr2	220276965	220276966	-	0	NA	Intergenic	AluSg|SINE|Alu	6134	NM_001927	1674	Hs.594952	NM_001927	ENSG00000175084	DES	CSM1|CSM2	desmin	protein-coding
chr6.165205834.-	chr6	165205834	165205835	-	0	NA	Intergenic	AluYb8|SINE|Alu	-517277	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chrX.53165834.+	chrX	53165834	53165835	+	0	NA	Intergenic	AluJo|SINE|Alu	54292	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.131639058.-	chr9	131639058	131639059	-	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	-5296	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr1.38400886.-	chr1	38400886	38400887	-	0	NA	"intron (NM_005540, intron 6 of 23)"	AluSx3|SINE|Alu	-11843	NM_005540	3633	Hs.449942	NM_005540	ENSG00000204084	INPP5B	5PTase	"inositol polyphosphate-5-phosphatase, 75kDa"	protein-coding
chr19.22037721.-	chr19	22037721	22037722	-	0	NA	Intergenic	AluSc8|SINE|Alu	2851	NM_001256653	7594	Hs.534365	NM_001256648	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
chr6.114067441.-	chr6	114067441	114067442	-	0	NA	Intergenic	AluY|SINE|Alu	111086	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr10.133869239.-	chr10	133869239	133869240	-	0	NA	Intergenic	Intergenic	49074	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr19.47789405.+	chr19	47789405	47789406	+	0	NA	Intergenic	AluSg7|SINE|Alu	11263	NM_178511	255783	Hs.128690	NM_178511	ENSG00000257704	PRR24	-	proline rich 24	protein-coding
chr12.34492670.+	chr12	34492670	34492671	+	0	NA	Intergenic	GSATII|Satellite|centr	317454	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr14.55349958.+	chr14	55349958	55349959	+	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	-5047	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr9.91150783.-	chr9	91150783	91150784	-	0	NA	"intron (NM_145283, intron 1 of 2)"	"intron (NM_145283, intron 1 of 2)"	-767	NM_001161625	158046	Hs.734507	NM_001161625	ENSG00000130045	NXNL2	C9orf121|RDCVF2	nucleoredoxin-like 2	protein-coding
chr2.95825032.-	chr2	95825032	95825033	-	0	NA	"5' UTR (NM_032788, exon 1 of 5)"	"5' UTR (NM_032788, exon 1 of 5)"	-231	NM_032788	84874	Hs.655109	NM_032788	ENSG00000144026	ZNF514	-	zinc finger protein 514	protein-coding
chr6.85476327.+	chr6	85476327	85476328	+	0	NA	Intergenic	Intergenic	-2373	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr15.64723780.+	chr15	64723780	64723781	+	0	NA	"intron (NM_016213, intron 11 of 12)"	AluSx1|SINE|Alu	43777	NM_016213	9325	Hs.500340	NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391	thyroid hormone receptor interactor 4	protein-coding
chr16.70144506.+	chr16	70144506	70144507	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3023	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr10.76620820.-	chr10	76620820	76620821	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34649	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr3.47744604.-	chr3	47744604	47744605	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78801	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr18.9127670.+	chr18	9127670	9127671	+	0	NA	"intron (NM_021074, intron 7 of 7)"	AluY|SINE|Alu	-9081	NM_015208	23253	Hs.464585	NM_001083625	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
chr10.324327.-	chr10	324327	324328	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98393	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr8.101734798.-	chr8	101734798	101734799	-	0	NA	promoter-TSS (NM_002568)	promoter-TSS (NM_002568)	483	NM_002568	26986	Hs.387804	NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	"poly(A) binding protein, cytoplasmic 1"	protein-coding
chr7.13260409.+	chr7	13260409	13260410	+	0	NA	Intergenic	AluY|SINE|Alu	533498	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr2.121244114.-	chr2	121244114	121244115	-	0	NA	Intergenic	Intergenic	20189	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chrX.91037189.+	chrX	91037189	91037190	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2929	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr21.46221650.-	chr21	46221650	46221651	-	0	NA	"exon (NM_003343, exon 1 of 6)"	"exon (NM_003343, exon 1 of 6)"	-101	NM_003343	7327	Hs.701398	NM_001202489	ENSG00000184787	UBE2G2	UBC7	ubiquitin-conjugating enzyme E2G 2	protein-coding
chr14.55738222.-	chr14	55738222	55738223	-	0	NA	promoter-TSS (NM_152231)	promoter-TSS (NM_152231)	-201	NM_017943	55030	Hs.654725	NM_017943	ENSG00000178974	FBXO34	Fbx34	F-box protein 34	protein-coding
chr1.109995471.-	chr1	109995471	109995472	-	0	NA	Intergenic	AluY|SINE|Alu	13629	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr2.95885038.+	chr2	95885038	95885039	+	0	NA	Intergenic	AluY|SINE|Alu	53855	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chrX.70493576.+	chrX	70493576	70493577	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9466	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr5.3764268.+	chr5	3764268	3764269	+	0	NA	Intergenic	Intergenic	168100	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
chr11.69451973.-	chr11	69451973	69451974	-	0	NA	Intergenic	CpG	3900	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr9.100503644.+	chr9	100503644	100503645	+	0	NA	Intergenic	CpG	-43953	NM_000380	7507	Hs.654364	NM_000380	ENSG00000136936	XPA	XP1|XPAC	"xeroderma pigmentosum, complementation group A"	protein-coding
chr13.111280673.+	chr13	111280673	111280674	+	0	NA	"intron (NR_040103, intron 5 of 9)"	"intron (NR_040103, intron 5 of 9)"	12742	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr2.1562094.-	chr2	1562094	1562095	-	0	NA	Intergenic	AluY|SINE|Alu	-143914	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr1.114299613.+	chr1	114299613	114299614	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2164	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr13.21363831.+	chr13	21363831	21363832	+	0	NA	"intron (NM_022459, intron 19 of 22)"	AluY|SINE|Alu	-15774	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
chr7.56441382.+	chr7	56441382	56441383	+	0	NA	Intergenic	Intergenic	74686	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
chr9.131293135.-	chr9	131293135	131293136	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21702	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr15.41613124.+	chr15	41613124	41613125	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11695	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr20.57363898.-	chr20	57363898	57363899	-	0	NA	Intergenic	Intergenic	-28851	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chrX.133639213.+	chrX	133639213	133639214	+	0	NA	Intergenic	AluSx|SINE|Alu	35079	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr19.1242549.-	chr19	1242549	1242550	-	0	NA	"exon (NM_001687, exon 2 of 4)"	"exon (NM_001687, exon 2 of 4)"	-800	NM_001687	513	Hs.418668	NM_001001975	ENSG00000099624	ATP5D	-	"ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit"	protein-coding
chr3.22843215.+	chr3	22843215	22843216	+	0	NA	Intergenic	L1PA2|LINE|L1	-401569	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr13.111268072.+	chr13	111268072	111268073	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	141	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr5.133503208.-	chr5	133503208	133503209	-	0	NA	"intron (NM_170679, intron 2 of 5)"	MER2|DNA|TcMar-Tigger	-9516	NM_006930	6500	Hs.171626	NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
chr21.35268422.+	chr21	35268422	35268423	+	0	NA	Intergenic	Intergenic	19736	NM_001697	539	Hs.409140	NM_001697	ENSG00000241837	ATP5O	ATPO|OSCP	"ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit"	protein-coding
chr17.18575629.-	chr17	18575629	18575630	-	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	-865	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr12.49856937.-	chr12	49856937	49856938	-	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	-73980	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr19.49964862.+	chr19	49964862	49964863	+	0	NA	"intron (NM_001145396, intron 5 of 15)"	"intron (NM_001145396, intron 5 of 15)"	8389	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chrX.53111679.-	chrX	53111679	53111680	-	0	NA	"5' UTR (NM_022117, exon 1 of 7)"	"5' UTR (NM_022117, exon 1 of 7)"	-137	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.155617316.+	chr2	155617316	155617317	+	0	NA	"intron (NM_002239, intron 2 of 2)"	AluY|SINE|Alu	62223	NM_001260509	3760	Hs.591606	NM_001260508	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	"potassium inwardly-rectifying channel, subfamily J, member 3"	protein-coding
chr21.46737226.-	chr21	46737226	46737227	-	0	NA	Intergenic	Intergenic	-29259	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr22.38336377.-	chr22	38336377	38336378	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13277	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr22.50853128.-	chr22	50853128	50853129	-	0	NA	"intron (NM_001242898, intron 5 of 23)"	"intron (NM_001242898, intron 5 of 23)"	-60336	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr6.25384341.-	chr6	25384341	25384342	-	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	-104685	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr16.1845111.+	chr16	1845111	1845112	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-202	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chrX.47336591.-	chrX	47336591	47336592	-	0	NA	"intron (NM_153380, intron 1 of 4)"	AluSx1|SINE|Alu	-5754	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr1.151124134.-	chr1	151124134	151124135	-	0	NA	Intergenic	AluSp|SINE|Alu	4971	NM_024575	79626	Hs.744751	NM_024575	ENSG00000163154	TNFAIP8L2	TIPE2	"tumor necrosis factor, alpha-induced protein 8-like 2"	protein-coding
chr10.24476813.+	chr10	24476813	24476814	+	0	NA	"intron (NM_001098500, intron 2 of 18)"	AluSp|SINE|Alu	-20907	NM_019590	56243	Hs.445885	NM_001098500	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding
chr3.189635234.-	chr3	189635234	189635235	-	0	NA	Intergenic	AluSz6|SINE|Alu	-87523	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	miscRNA
chr13.45945058.-	chr13	45945058	45945059	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29578	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chr8.117309737.+	chr8	117309737	117309738	+	0	NA	"intron (NR_046215, intron 1 of 13)"	SVA_B|Other|Other	27560	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	miscRNA
chr2.74351447.+	chr2	74351447	74351448	+	0	NA	Intergenic	SVA_B|Other|Other	23592	NM_212552	388962	Hs.61472	NM_001035505	ENSG00000163170	BOLA3	MMDS2	bolA homolog 3 (E. coli)	protein-coding
chr7.158284927.-	chr7	158284927	158284928	-	0	NA	"intron (NM_002847, intron 1 of 22)"	"intron (NM_002847, intron 1 of 22)"	-40578	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr4.17513809.+	chr4	17513809	17513810	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	48	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chrX.9443120.+	chrX	9443120	9443121	+	0	NA	"intron (NM_005647, intron 1 of 17)"	AluSx1|SINE|Alu	9919	NM_005647	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr15.90792639.+	chr15	90792639	90792640	+	0	NA	promoter-TSS (NM_001029964)	promoter-TSS (NM_001029964)	-125	NM_001029964	440307	Hs.632164	NM_001029964	ENSG00000213471	TTLL13	-	"tubulin tyrosine ligase-like family, member 13"	protein-coding
chr6.34857471.-	chr6	34857471	34857472	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-433	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr3.112807989.-	chr3	112807989	112807990	-	0	NA	Intergenic	AluYc|SINE|Alu	69434	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr10.76198266.-	chr10	76198266	76198267	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262019	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr12.133366751.-	chr12	133366751	133366752	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28300	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr18.73357759.-	chr18	73357759	73357760	-	0	NA	Intergenic	L2|LINE|L2	218170	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr4.116121648.-	chr4	116121648	116121649	-	0	NA	Intergenic	LTR12C|LTR|ERV1	86616	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	NDST-4|NHSST4	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4	protein-coding
chr5.693995.+	chr5	693995	693996	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-485	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr16.87910822.-	chr16	87910822	87910823	-	0	NA	Intergenic	AluY|SINE|Alu	7722	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	"solute carrier family 7 (amino acid transporter light chain, L system), member 5"	protein-coding
chr3.13876339.-	chr3	13876339	13876340	-	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	-45279	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr12.8057420.-	chr12	8057420	8057421	-	0	NA	Intergenic	AluSg7|SINE|Alu	-31472	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	"solute carrier family 2 (facilitated glucose transporter), member 3"	protein-coding
chr2.223468816.-	chr2	223468816	223468817	-	0	NA	"intron (NM_005687, intron 15 of 16)"	AluY|SINE|Alu	-52011	NM_005687	10056	Hs.471452	NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|PheHB|PheRS	"phenylalanyl-tRNA synthetase, beta subunit"	protein-coding
chr3.8721273.-	chr3	8721273	8721274	-	0	NA	Intergenic	Intergenic	27509	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr19.4141917.+	chr19	4141917	4141918	+	0	NA	Intergenic	AluY|SINE|Alu	-11681	NM_001271995	84699	Hs.247744	NM_001271995	ENSG00000060566	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
chrX.31406376.+	chrX	31406376	31406377	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120039	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr19.8298184.-	chr19	8298184	8298185	-	0	NA	"intron (NM_024552, intron 2 of 11)"	AluSx|SINE|Alu	-23967	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
chr19.48065575.+	chr19	48065575	48065576	+	0	NA	Intergenic	AluSz|SINE|Alu	-6462	NM_001277075	84215	Hs.14161	NM_001101419	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
chr17.29255149.+	chr17	29255149	29255150	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6395	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr1.205072086.+	chr1	205072086	205072087	+	0	NA	"intron (NM_001193273, intron 5 of 13)"	AluSp|SINE|Alu	-18498	NM_203376	388730	Hs.146928	NM_203376	ENSG00000174529	TMEM81	HC3107|KVLA2788|UNQ2788	transmembrane protein 81	protein-coding
chr14.102101602.+	chr14	102101602	102101603	+	0	NA	Intergenic	Intergenic	73914	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr6.108489515.+	chr6	108489515	108489516	+	0	NA	"intron (NM_003269, intron 1 of 8)"	CpG-22435	2300	NM_003269	7101	Hs.157688	NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	"nuclear receptor subfamily 2, group E, member 1"	protein-coding
chr2.237068291.-	chr2	237068291	237068292	-	0	NA	Intergenic	CpG	-8361	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr8.143694257.-	chr8	143694257	143694258	-	0	NA	"3' UTR (NM_015193, exon 1 of 3)"	"3' UTR (NM_015193, exon 1 of 3)"	-1576	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr7.45775936.-	chr7	45775936	45775937	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32681	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr1.212898484.-	chr1	212898484	212898485	-	0	NA	Intergenic	SVA_B|Other|Other	25157	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr16.89034079.-	chr16	89034079	89034080	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9425	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr18.48196345.-	chr18	48196345	48196346	-	0	NA	"intron (NM_002747, intron 2 of 5)"	AluY|SINE|Alu	-109861	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr11.2424756.+	chr11	2424756	2424757	+	0	NA	TTS (NM_014555)	TTS (NM_014555)	1233	NM_005706	10078	Hs.523424	NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
chr4.148667071.-	chr4	148667071	148667072	-	0	NA	"intron (NM_024605, intron 1 of 22)"	AluSx3|SINE|Alu	-13618	NM_024605	79658	Hs.368631	NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
chr10.42379915.-	chr10	42379915	42379916	-	0	NA	Intergenic	Intergenic	-483578	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr1.243422552.+	chr1	243422552	243422553	+	0	NA	"intron (NM_006642, intron 1 of 17)"	AluY|SINE|Alu	3245	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
chr12.106533435.-	chr12	106533435	106533436	-	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	-376	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chrX.90204088.+	chrX	90204088	90204089	+	0	NA	Intergenic	AluY|SINE|Alu	-485509	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr8.21101036.-	chr8	21101036	21101037	-	0	NA	Intergenic	AluYb8|SINE|Alu	-269539	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	miscRNA
chr6.165205833.+	chr6	165205833	165205834	+	0	NA	Intergenic	AluYb8|SINE|Alu	517278	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr10.59351209.-	chr10	59351209	59351210	-	0	NA	Intergenic	AluY|SINE|Alu	286890	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr21.37627704.+	chr21	37627704	37627705	+	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	-64783	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr20.45935934.-	chr20	45935934	45935935	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11312	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr15.81294603.-	chr15	81294603	81294604	-	0	NA	"5' UTR (NM_022566, exon 1 of 1)"	"5' UTR (NM_022566, exon 1 of 1)"	-1308	NM_022566	59274	Hs.513071	NM_022566	ENSG00000140406	MESDC1	-	mesoderm development candidate 1	protein-coding
chr7.87505588.+	chr7	87505588	87505589	+	0	NA	promoter-TSS (NM_006716)	promoter-TSS (NM_006716)	44	NM_006716	10926	Hs.485380	NM_006716	ENSG00000006634	DBF4	ASK|CHIF|DBF4A|ZDBF1	DBF4 homolog (S. cerevisiae)	protein-coding
chr17.47363942.-	chr17	47363942	47363943	-	0	NA	Intergenic	AluSx|SINE|Alu	-38337	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr2.217090977.-	chr2	217090977	217090978	-	0	NA	Intergenic	SVA_E|Other|Other	-9365	NR_037701	150967	Hs.56876	NM_001199924	ENSG00000260804	PKI55	-	DKFZp434H1419	miscRNA
chr5.139090846.-	chr5	139090846	139090847	-	0	NA	Intergenic	CpG	-62545	NM_016463	51523	Hs.189119	NM_016463		CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
chr6.33500245.-	chr6	33500245	33500246	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47825	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr10.14851252.+	chr10	14851252	14851253	+	0	NA	Intergenic	AluY|SINE|Alu	28731	NM_001029954	441549	Hs.559067	NM_001029954		CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
chr13.98679667.+	chr13	98679667	98679668	+	0	NA	Intergenic	MER65A|LTR|ERV1	73738	NM_002271	3843	Hs.712598	NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
chr6.3163153.-	chr6	3163153	3163154	-	0	NA	Intergenic	CpG	5370	NM_001069	7280	Hs.654543	NM_001069	ENSG00000137267	TUBB2A	TUBB|TUBB2|dJ40E16.7	"tubulin, beta 2A class IIa"	protein-coding
chr10.95605005.-	chr10	95605005	95605006	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48725	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr5.150614479.+	chr5	150614479	150614480	+	0	NA	Intergenic	Intergenic	-10825	NM_015621	26112	Hs.655336	NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
chr7.56109515.-	chr7	56109515	56109516	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9753	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr21.34758263.-	chr21	34758263	34758264	-	0	NA	Intergenic	AluSp|SINE|Alu	16939	NM_005534	3460	Hs.634632	NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
chrX.86721023.-	chrX	86721023	86721024	-	0	NA	Intergenic	SVA_C|Other|Other	51692	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr9.139555593.+	chr9	139555593	139555594	+	0	NA	"intron (NR_046367, intron 1 of 9)"	"intron (NR_046367, intron 1 of 9)"	-1786	NM_016215	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr2.218926988.-	chr2	218926988	218926989	-	0	NA	promoter-TSS (NR_002712)	promoter-TSS (NR_002712)	975	NR_002712	3580	Hs.647858	NR_002712		CXCR2P1	CXCR2P|IL8RBP	chemokine (C-X-C motif) receptor 2 pseudogene 1	pseudo
chr2.159651784.+	chr2	159651784	159651785	+	0	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	-45	NM_001017920	92196	Hs.59761	NM_001017920	ENSG00000163331	DAPL1	-	death associated protein-like 1	protein-coding
chr13.31734993.-	chr13	31734993	31734994	-	0	NA	"intron (NM_006644, intron 1 of 17)"	"intron (NM_006644, intron 1 of 17)"	-1124	NM_006644	10808	Hs.743267	NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
chr16.58288659.+	chr16	58288659	58288660	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4819	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr2.91990343.-	chr2	91990343	91990344	-	0	NA	Intergenic	AluY|SINE|Alu	-26975	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
chr9.34329748.-	chr9	34329748	34329749	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-244	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr16.1332167.-	chr16	1332167	1332168	-	0	NA	Intergenic	AluSx|SINE|Alu	-25894	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr8.1312664.-	chr8	1312664	1312665	-	0	NA	Intergenic	Intergenic	61837	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr2.167467338.-	chr2	167467338	167467339	-	0	NA	Intergenic	Intergenic	123857	NM_002976	6332	Hs.644853	NM_002976	ENSG00000136546	SCN7A	NaG|Nav2.1|Nav2.2|SCN6A	"sodium channel, voltage-gated, type VII, alpha subunit"	protein-coding
chr12.110327005.+	chr12	110327005	110327006	+	0	NA	Intergenic	AluY|SINE|Alu	-8712	NM_016433	51228	Hs.381256	NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
chr5.176935333.+	chr5	176935333	176935334	+	0	NA	"exon (NM_024872, exon 3 of 6)"	"exon (NM_024872, exon 3 of 6)"	1525	NM_024872	79930	Hs.720849	NM_001144875	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
chr10.101292640.+	chr10	101292640	101292641	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-50	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr17.74632780.-	chr17	74632780	74632781	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7114	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr10.123791061.-	chr10	123791061	123791062	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42372	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr11.2000270.+	chr11	2000270	2000271	+	0	NA	Intergenic	Intergenic	10880	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	miscRNA
chr17.80376643.+	chr17	80376643	80376644	+	0	NA	promoter-TSS (NM_024648)	promoter-TSS (NM_024648)	-130	NM_175902	79701	Hs.187505	NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
chr13.81676525.-	chr13	81676525	81676526	-	0	NA	Intergenic	SVA_D|Other|Other	761439	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr15.23086555.-	chr15	23086555	23086556	-	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	119	NM_144599	123606	Hs.511797	NM_001142275	ENSG00000170113	NIPA1	FSP3|SPG6	non imprinted in Prader-Willi/Angelman syndrome 1	protein-coding
chr14.91843897.-	chr14	91843897	91843898	-	0	NA	"intron (NM_001080414, intron 3 of 29)"	"intron (NM_001080414, intron 3 of 29)"	-40291	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509	coiled-coil domain containing 88C	protein-coding
chr9.105365739.-	chr9	105365739	105365740	-	0	NA	Intergenic	SVA_B|Other|Other	391854	NM_001340	1539	Hs.3232	NM_001340	ENSG00000155833	CYLC2	-	"cylicin, basic protein of sperm head cytoskeleton 2"	protein-coding
chr10.126538773.-	chr10	126538773	126538774	-	0	NA	Intergenic	AluSx|SINE|Alu	-48419	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr2.92172350.+	chr2	92172350	92172351	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	43191	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr12.132372591.-	chr12	132372591	132372592	-	0	NA	Intergenic	AluSx|SINE|Alu	6688	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr1.16961180.-	chr1	16961180	16961181	-	0	NA	Intergenic	AluSx|SINE|Alu	3779	NR_026752	84809	Hs.733729	NR_026752	ENSG00000215908	CROCCP2	CROCCL1	"ciliary rootlet coiled-coil, rootletin pseudogene 2"	pseudo
chr2.232277189.-	chr2	232277189	232277190	-	0	NA	Intergenic	Intergenic	-16854	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr19.4713729.+	chr19	4713729	4713730	+	0	NA	"intron (NM_139159, intron 4 of 21)"	"intron (NM_139159, intron 4 of 21)"	10126	NM_139159	91039	Hs.515081	NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPRP-2|DPRP2	dipeptidyl-peptidase 9	protein-coding
chrX.86721022.-	chrX	86721022	86721023	-	0	NA	Intergenic	SVA_C|Other|Other	51693	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr2.38824989.-	chr2	38824989	38824990	-	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	-5189	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr2.61306993.+	chr2	61306993	61306994	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13630	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr11.68572915.+	chr11	68572915	68572916	+	0	NA	"intron (NM_001031847, intron 4 of 18)"	AluSz6|SINE|Alu	36484	NM_001876	1374	Hs.503043	NM_001031847	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A (liver)	protein-coding
chr2.183551372.-	chr2	183551372	183551373	-	0	NA	Intergenic	L1PA5|LINE|L1	29396	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chrX.46794149.-	chrX	46794149	46794150	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22281	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr3.1144608.+	chr3	1144608	1144609	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9979	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr1.28003884.-	chr1	28003884	28003885	-	0	NA	Intergenic	AluY|SINE|Alu	5160	NM_002038	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr19.14551298.-	chr19	14551298	14551299	-	0	NA	"intron (NM_213560, intron 1 of 21)"	"intron (NM_213560, intron 1 of 21)"	-212	NM_213560	5585	Hs.466044	NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
chr1.203316761.+	chr1	203316761	203316762	+	0	NA	"exon (NM_002023, exon 2 of 3)"	"exon (NM_002023, exon 2 of 3)"	3528	NM_002023	2331	Hs.519168	NM_002023	ENSG00000122176	FMOD	SLRR2E	fibromodulin	protein-coding
chr2.133173544.+	chr2	133173544	133173545	+	0	NA	promoter-TSS (NM_001508)	promoter-TSS (NM_001508)	-603	NM_001508	2863	Hs.744392	NM_001508	ENSG00000183840	GPR39	-	G protein-coupled receptor 39	protein-coding
chr16.77246807.+	chr16	77246807	77246808	+	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	13458	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr7.532140.+	chr7	532140	532141	+	0	NA	Intergenic	Intergenic	27341	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr22.42834061.+	chr22	42834061	42834062	+	0	NA	Intergenic	Intergenic	-5660	NM_145912	150372	Hs.436677	NM_145912	ENSG00000235568	NFAM1	CNAIP|bK126B4.4	NFAT activating protein with ITAM motif 1	protein-coding
chr6.148723778.+	chr6	148723778	148723779	+	0	NA	"intron (NM_015278, intron 2 of 19)"	AluY|SINE|Alu	60049	NM_015278	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
chr18.5524280.+	chr18	5524280	5524281	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19706	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr16.22987679.-	chr16	22987679	22987680	-	0	NA	Intergenic	AluSc8|SINE|Alu	-161819	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr2.58008672.-	chr2	58008672	58008673	-	0	NA	Intergenic	AluY|SINE|Alu	265105	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr3.164119679.+	chr3	164119679	164119680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676604	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr8.38592275.-	chr8	38592275	38592276	-	0	NA	"intron (NM_001146216, intron 1 of 12)"	"intron (NM_001146216, intron 1 of 12)"	-6571	NM_001146216	6867	Hs.279245	NM_001122824	ENSG00000147526	TACC1	Ga55	"transforming, acidic coiled-coil containing protein 1"	protein-coding
chr2.120775625.+	chr2	120775625	120775626	+	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	4840	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr3.185552089.-	chr3	185552089	185552090	-	0	NA	Intergenic	AluYa5|SINE|Alu	9262	NM_001007225	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr1.54839949.-	chr1	54839949	54839950	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32030	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr7.55379483.+	chr7	55379483	55379484	+	0	NA	Intergenic	SVA_D|Other|Other	-53658	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr8.42217728.+	chr8	42217728	42217729	+	0	NA	"intron (NM_002690, intron 9 of 13)"	AluSz|SINE|Alu	16946	NM_014420	27121	Hs.159311	NM_014420	ENSG00000104371	DKK4	DKK-4	dickkopf homolog 4 (Xenopus laevis)	protein-coding
chr17.9408042.+	chr17	9408042	9408043	+	0	NA	"intron (NM_004853, intron 5 of 7)"	AluSc8|SINE|Alu	71233	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
chr22.46936386.+	chr22	46936386	46936387	+	0	NA	Intergenic	AluSx|SINE|Alu	-3319	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	CDHF9|FMI2|HFMI2|ME2	"cadherin, EGF LAG seven-pass G-type receptor 1"	protein-coding
chrX.53111705.-	chrX	53111705	53111706	-	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	-163	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.218139.+	chr5	218139	218140	+	0	NA	promoter-TSS (NM_004168)	promoter-TSS (NM_004168)	158	NM_145265	133957	Hs.294145	NM_145265		CCDC127	-	coiled-coil domain containing 127	protein-coding
chr3.126398463.-	chr3	126398463	126398464	-	0	NA	Intergenic	Intergenic	-17539	NR_034158	255330	Hs.145435	NM_174935	ENSG00000198284	NUP210P1	C3orf46	nucleoporin 210kDa pseudogene 1	pseudo
chr12.123965666.-	chr12	123965666	123965667	-	0	NA	"intron (NM_178314, intron 6 of 6)"	AluSx1|SINE|Alu	-21280	NM_180699	11066	Hs.632738	NM_022717		SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein 35kDa (U11/U12)	protein-coding
chr19.34008731.-	chr19	34008731	34008732	-	0	NA	"intron (NM_001166056, intron 1 of 12)"	AluSx3|SINE|Alu	-4068	NM_001166057	5184	Hs.36473	NM_000285	ENSG00000124299	PEPD	PROLIDASE	peptidase D	protein-coding
chr2.122878802.-	chr2	122878802	122878803	-	0	NA	Intergenic	AluY|SINE|Alu	-365681	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr2.240980355.+	chr2	240980355	240980356	+	0	NA	TTS (NM_001080835)	TTS (NM_001080835)	2044	NM_001080835	643905	Hs.693479	XM_003960316	ENSG00000221961	PRR21	-	proline rich 21	protein-coding
chr14.102983872.+	chr14	102983872	102983873	+	0	NA	Intergenic	CpG	-7744	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr2.126700662.-	chr2	126700662	126700663	-	0	NA	Intergenic	LTR12C|LTR|ERV1	712849	NM_001256584	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr11.66970140.-	chr11	66970140	66970141	-	0	NA	"intron (NM_012308, intron 5 of 20)"	AluY|SINE|Alu	37366	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr19.27733225.+	chr19	27733225	27733226	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	551623	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	miscRNA
chr6.43070157.+	chr6	43070157	43070158	+	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	25605	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr16.723826.-	chr16	723826	723827	-	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	2249	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr8.141467287.+	chr8	141467287	141467288	+	0	NA	"intron (NM_031466, intron 1 of 22)"	CpG	574	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr14.73704497.+	chr14	73704497	73704498	+	0	NA	"intron (NM_173462, intron 1 of 25)"	CpG	292	NM_173462	89932	Hs.509909	NM_173462	ENSG00000100767	PAPLN	-	"papilin, proteoglycan-like sulfated glycoprotein"	protein-coding
chr4.26862270.+	chr4	26862270	26862271	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-43	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr11.72538322.+	chr11	72538322	72538323	+	0	NA	"exon (NM_033388, exon 14 of 18)"	"exon (NM_033388, exon 14 of 18)"	12871	NM_033388	89849	Hs.653186	NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
chr20.59837123.+	chr20	59837123	59837124	+	0	NA	"intron (NM_001794, intron 2 of 15)"	"intron (NM_001794, intron 2 of 15)"	9641	NM_001794	1002	Hs.473231	NM_001252338		CDH4	CAD4|RCAD	"cadherin 4, type 1, R-cadherin (retinal)"	protein-coding
chr2.128432618.-	chr2	128432618	128432619	-	0	NA	"5' UTR (NM_001161403, exon 1 of 10)"	"5' UTR (NM_001161403, exon 1 of 10)"	-146	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr10.116527570.-	chr10	116527570	116527571	-	0	NA	Intergenic	CpG	53933	NM_001135051	57700	Hs.192619	NM_001135051	ENSG00000151553	FAM160B1	KIAA1600|bA106M7.3	"family with sequence similarity 160, member B1"	protein-coding
chr1.109995479.+	chr1	109995479	109995480	+	0	NA	Intergenic	AluY|SINE|Alu	-13621	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr10.133869266.+	chr10	133869266	133869267	+	0	NA	Intergenic	Intergenic	-49047	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr2.102559042.+	chr2	102559042	102559043	+	0	NA	Intergenic	AluY|SINE|Alu	-49264	NM_004633	7850	Hs.25333	NM_001261419	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	"interleukin 1 receptor, type II"	protein-coding
chr21.26998601.+	chr21	26998601	26998602	+	0	NA	Intergenic	Intergenic	-12993	NM_021219	58494	Hs.517227	NM_001270408	ENSG00000154721	JAM2	C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM	junctional adhesion molecule 2	protein-coding
chr12.93323497.+	chr12	93323497	93323498	+	0	NA	promoter-TSS (NM_003566)	promoter-TSS (NM_003566)	-390	NM_003566	8411	Hs.567367	NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
chr11.77200946.+	chr11	77200946	77200947	+	0	NA	Intergenic	SVA_D|Other|Other	-15838	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chrX.48975595.+	chrX	48975595	48975596	+	0	NA	"intron (NM_015698, intron 4 of 10)"	AluY|SINE|Alu	4484	NM_015698	27238	Hs.503666	NM_015698		GPKOW	GPATC5|GPATCH5|Spp2|T54	G patch domain and KOW motifs	protein-coding
chr2.234157323.-	chr2	234157323	234157324	-	0	NA	Intergenic	AluSx1|SINE|Alu	2894	NM_001190266	55054	Hs.529322	NM_001190266	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
chr11.68303194.-	chr11	68303194	68303195	-	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	-75008	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr1.21671981.+	chr1	21671981	21671982	+	0	NA	promoter-TSS (NM_001113348)	promoter-TSS (NM_001113348)	53	NM_001113348	1889	Hs.195080	NM_001113347	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
chr22.43175053.+	chr22	43175053	43175054	+	0	NA	Intergenic	AluY|SINE|Alu	-58177	NM_017436	53947	Hs.105956	NM_017436		A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	"alpha 1,4-galactosyltransferase"	protein-coding
chr1.10727922.+	chr1	10727922	10727923	+	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	128811	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr19.45412137.+	chr19	45412137	45412138	+	0	NA	"exon (NM_000041, exon 4 of 4)"	"exon (NM_000041, exon 4 of 4)"	3098	NM_000041	348	Hs.654439	NM_000041	ENSG00000130203	APOE	AD2|LDLCQ5|LPG	apolipoprotein E	protein-coding
chr3.98624717.-	chr3	98624717	98624718	-	0	NA	Intergenic	AluY|SINE|Alu	4184	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr19.19932519.-	chr19	19932519	19932520	-	0	NA	promoter-TSS (NM_001145404)	promoter-TSS (NM_001145404)	-41	NM_001145404	440515	Hs.351906	NM_001145405		ZNF506	-	zinc finger protein 506	protein-coding
chr1.197418636.-	chr1	197418636	197418637	-	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	-181302	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr1.178513353.+	chr1	178513353	178513354	+	0	NA	"intron (NR_033186, intron 1 of 2)"	AluSg|SINE|Alu	1422	NR_033186	400798	Hs.668085	NM_207467	ENSG00000184909	C1orf220	-	chromosome 1 open reading frame 220	miscRNA
chr11.101908823.+	chr11	101908823	101908824	+	0	NA	Intergenic	AluYa5|SINE|Alu	-9346	NM_001195005	85016	Hs.98328	NM_001195005	ENSG00000137691	C11orf70	-	chromosome 11 open reading frame 70	protein-coding
chr7.63023268.+	chr7	63023268	63023269	+	0	NA	Intergenic	Intergenic	-58200	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr16.619899.-	chr16	619899	619900	-	0	NA	promoter-TSS (NM_148920)	promoter-TSS (NM_148920)	69	NM_148920	9091	Hs.741878	NM_004204	ENSG00000007541	PIGQ	GPI1|c407A10.1	"phosphatidylinositol glycan anchor biosynthesis, class Q"	protein-coding
chr2.43253965.+	chr2	43253965	43253966	+	0	NA	Intergenic	Intergenic	199780	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr13.19683425.+	chr13	19683425	19683426	+	0	NA	Intergenic	L1PA2|LINE|L1	-33697	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr7.21370274.+	chr7	21370274	21370275	+	0	NA	Intergenic	MER52D|LTR|ERV1	-97415	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr9.719246.+	chr9	719246	719247	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12440	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr16.30263830.-	chr16	30263830	30263831	-	0	NA	Intergenic	AluSx|SINE|Alu	6898	NR_002555	613037	Hs.611072	NR_002555	ENSG00000198064	LOC613037	-	nuclear pore complex interacting protein pseudogene	pseudo
chr18.55790695.-	chr18	55790695	55790696	-	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	25870	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr8.64772943.+	chr8	64772943	64772944	+	0	NA	Intergenic	AluY|SINE|Alu	90955	NR_038875	286184	Hs.586402	NR_038875	ENSG00000253734	LOC286184	-	uncharacterized LOC286184	miscRNA
chr20.45935912.-	chr20	45935912	45935913	-	0	NA	"intron (NM_183047, intron 3 of 22)"	"intron (NM_183047, intron 3 of 22)"	11334	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr18.12734566.-	chr18	12734566	12734567	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31579	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr9.6559757.-	chr9	6559757	6559758	-	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	-85935	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr11.47459676.-	chr11	47459676	47459677	-	0	NA	"intron (NM_032645, intron 5 of 5)"	"intron (NM_032645, intron 5 of 5)"	-11054	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
chr2.25667156.-	chr2	25667156	25667157	-	0	NA	"intron (NM_001256303, intron 12 of 19)"	AluSx1|SINE|Alu	101697	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
chr6.167600178.-	chr6	167600178	167600179	-	0	NA	Intergenic	Intergenic	-16097	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chrX.47334413.+	chrX	47334413	47334414	+	0	NA	"intron (NM_153380, intron 1 of 4)"	AluYk12|SINE|Alu	7932	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr2.240321956.+	chr2	240321956	240321957	+	0	NA	"intron (NM_006037, intron 1 of 26)"	CpG	687	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr4.149686298.+	chr4	149686298	149686299	+	0	NA	Intergenic	AluJb|SINE|Alu	-322626	NM_001166104	4306	Hs.163924	NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	"nuclear receptor subfamily 3, group C, member 2"	protein-coding
chr16.31932493.-	chr16	31932493	31932494	-	0	NA	Intergenic	AluY|SINE|Alu	-47414	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr5.108146234.+	chr5	108146234	108146235	+	0	NA	"intron (NM_005246, intron 3 of 19)"	L1PA16|LINE|L1	62711	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
chrX.99617553.-	chrX	99617553	99617554	-	0	NA	"intron (NM_020766, intron 2 of 4)"	AluY|SINE|Alu	-47718	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr4.166248593.+	chr4	166248593	166248594	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-225	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr10.104209707.-	chr10	104209707	104209708	-	0	NA	"non-coding (NR_038938, exon 1 of 3)"	"non-coding (NR_038938, exon 1 of 3)"	-133	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr11.101981844.+	chr11	101981844	101981845	+	0	NA	"exon (NM_001130145, exon 1 of 9)"	"exon (NM_001130145, exon 1 of 9)"	652	NM_001195044	10413	Hs.503692	NM_001130145	ENSG00000137693	YAP1	YAP|YAP2|YAP65|YKI	Yes-associated protein 1	protein-coding
chr9.138065701.+	chr9	138065701	138065702	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7754	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr16.89117859.+	chr16	89117859	89117860	+	0	NA	Intergenic	Intergenic	-42358	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr14.21741124.+	chr14	21741124	21741125	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3486	NM_031314	3183	Hs.700762	NM_001077442	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
chr8.57184591.-	chr8	57184591	57184592	-	0	NA	Intergenic	SVA_D|Other|Other	-48650	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr2.236402686.+	chr2	236402686	236402687	+	0	NA	promoter-TSS (NM_001244888)	promoter-TSS (NM_001244888)	-47	NM_001037131	116987	Hs.435039	NM_001037131	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1"	protein-coding
chr16.70148598.+	chr16	70148598	70148599	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1069	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr5.39649188.+	chr5	39649188	39649189	+	0	NA	Intergenic	AluSx3|SINE|Alu	-223853	NM_001343	1601	Hs.696631	NM_001244871	ENSG00000153071	DAB2	DOC-2|DOC2	"Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)"	protein-coding
chr13.96681122.+	chr13	96681122	96681123	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24614	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr15.83365902.+	chr15	83365902	83365903	+	0	NA	"intron (NM_004644, intron 1 of 25)"	AluY|SINE|Alu	12733	NM_004644	8120	Hs.199593	NM_004644	ENSG00000103723	AP3B2	NAPTB	"adaptor-related protein complex 3, beta 2 subunit"	protein-coding
chr7.6998263.+	chr7	6998263	6998264	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-132337	NM_198097	221960	Hs.567779	NM_198097		CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
chrX.49682934.+	chrX	49682934	49682935	+	0	NA	Intergenic	AluSz|SINE|Alu	-4291	NM_001127898	1184	Hs.166486	NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	"chloride channel, voltage-sensitive 5"	protein-coding
chr12.133115257.+	chr12	133115257	133115258	+	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	48100	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr17.810066.+	chr17	810066	810067	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42715	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr12.124780027.-	chr12	124780027	124780028	-	0	NA	"intron (NM_181709, intron 1 of 2)"	"intron (NM_181709, intron 1 of 2)"	-6317	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	FAM101A	-	"family with sequence similarity 101, member A"	protein-coding
chr9.2018026.+	chr9	2018026	2018027	+	0	NA	"intron (NM_139045, intron 1 of 32)"	CpG	2684	NM_139045	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2"	protein-coding
chrX.70493518.+	chrX	70493518	70493519	+	0	NA	"intron (NR_001568, intron 3 of 3)"	AluSz|SINE|Alu	-9524	NM_001145410	4841	Hs.700344	NM_001145408	ENSG00000147140	NONO	NMT55|NRB54|P54|P54NRB	"non-POU domain containing, octamer-binding"	protein-coding
chr13.31023959.-	chr13	31023959	31023960	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16122	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr3.50701702.-	chr3	50701702	50701703	-	0	NA	Intergenic	AluY|SINE|Alu	10809	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr20.37554769.-	chr20	37554769	37554770	-	0	NA	promoter-TSS (NM_030919)	promoter-TSS (NM_030919)	186	NM_030919	81610	Hs.726442	NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	"family with sequence similarity 83, member D"	protein-coding
chr7.63023251.-	chr7	63023251	63023252	-	0	NA	Intergenic	Intergenic	58217	NR_036246	100422917		NR_036246	ENSG00000264426	MIR4283-1	-	microRNA 4283-1	miscRNA
chr6.15663216.+	chr6	15663216	15663217	+	0	NA	promoter-TSS (NM_001271667)	promoter-TSS (NM_001271667)	73	NR_036448	84062	Hs.571148	NM_001271667	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
chr7.55379448.+	chr7	55379448	55379449	+	0	NA	Intergenic	SVA_D|Other|Other	-53693	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr3.139489282.+	chr3	139489282	139489283	+	0	NA	Intergenic	AluY|SINE|Alu	-92397	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr2.230579307.-	chr2	230579307	230579308	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	21	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr14.69779697.+	chr14	69779697	69779698	+	0	NA	"intron (NM_020692, intron 1 of 15)"	MIR|SINE|MIR	53016	NM_001168368	57452	Hs.21035	NM_001168368	ENSG00000100626	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
chr9.861771.+	chr9	861771	861772	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20081	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr1.46088407.+	chr1	46088407	46088408	+	0	NA	"intron (NM_001190182, intron 5 of 12)"	CpG-1050	1324	NM_001190182	149483	Hs.18912	NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
chr2.48010445.-	chr2	48010445	48010446	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-224	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr13.73633300.-	chr13	73633300	73633301	-	0	NA	"5' UTR (NM_001730, exon 1 of 4)"	"5' UTR (NM_001730, exon 1 of 4)"	-158	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
chr6.41702107.-	chr6	41702107	41702108	-	0	NA	promoter-TSS (NM_001271945)	promoter-TSS (NM_001271945)	-32	NM_001271945	7942	Hs.485360	NM_001167827	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
chr16.440470.-	chr16	440470	440471	-	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	6722	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr1.6132029.+	chr1	6132029	6132030	+	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	25855	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr13.22523740.-	chr13	22523740	22523741	-	0	NA	Intergenic	AluYb8|SINE|Alu	71441	NR_047040	100874182	Hs.737034	NR_047040		LINC00424	-	long intergenic non-protein coding RNA 424	miscRNA
chrX.99979204.+	chrX	99979204	99979205	+	0	NA	"intron (NM_080737, intron 1 of 18)"	SVA_D|Other|Other	7318	NM_080737	94121	Hs.592224	NM_001129896	ENSG00000102362	SYTL4	SLP4	synaptotagmin-like 4	protein-coding
chr21.45684312.+	chr21	45684312	45684313	+	0	NA	Intergenic	AluY|SINE|Alu	-2213	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr7.845976.+	chr7	845976	845977	+	0	NA	Intergenic	AluY|SINE|Alu	-9218	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr2.101245796.-	chr2	101245796	101245797	-	0	NA	Intergenic	Intergenic	-66378	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr10.69822274.+	chr10	69822274	69822275	+	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	12829	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr17.41566514.-	chr17	41566514	41566515	-	0	NA	"intron (NM_004941, intron 1 of 22)"	AluSx1|SINE|Alu	-5180	NM_004941	1659	Hs.463105	NM_004941		DHX8	DDX8|HRH1|PRP22|PRPF22	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding
chr9.137588851.+	chr9	137588851	137588852	+	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	55199	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr6.13814567.-	chr6	13814567	13814568	-	0	NA	"exon (NM_001031713, exon 1 of 9)"	"exon (NM_001031713, exon 1 of 9)"	-225	NM_001031713	63933	Hs.214043	NM_022102		MCUR1	C6orf79|CCDC90A	mitochondrial calcium uniporter regulator 1	protein-coding
chr12.105389730.-	chr12	105389730	105389731	-	0	NA	Intergenic	AluY|SINE|Alu	-9632	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr2.242447212.+	chr2	242447212	242447213	+	0	NA	"intron (NR_073530, intron 1 of 10)"	CpG	563	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr22.22550479.-	chr22	22550479	22550480	-	0	NA	Intergenic	Intergenic	48721	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr19.18057754.+	chr19	18057754	18057755	+	0	NA	Intergenic	AluSx|SINE|Alu	-4357	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr8.1312654.-	chr8	1312654	1312655	-	0	NA	Intergenic	Intergenic	61827	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr8.99986223.-	chr8	99986223	99986224	-	0	NA	Intergenic	CpG	-29592	NM_053001	116039	Hs.253247	NM_001142462	ENSG00000164920	OSR2	-	odd-skipped related 2 (Drosophila)	protein-coding
chr11.71702923.-	chr11	71702923	71702924	-	0	NA	"intron (NM_018320, intron 6 of 8)"	AluJo|SINE|Alu	7035	NM_001039660	10068	Hs.591967	NM_001039659	ENSG00000137496	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
chr10.95605043.+	chr10	95605043	95605044	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-48687	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr10.771706.-	chr10	771706	771707	-	0	NA	Intergenic	Intergenic	36098	NM_014974	22982	Hs.432397	NM_014974	ENSG00000151240	DIP2C	KIAA0934	DIP2 disco-interacting protein 2 homolog C (Drosophila)	protein-coding
chr12.105389743.+	chr12	105389743	105389744	+	0	NA	Intergenic	AluY|SINE|Alu	9645	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr6.170548030.+	chr6	170548030	170548031	+	0	NA	Intergenic	Intergenic	23627	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr8.82599900.+	chr8	82599900	82599901	+	0	NA	Intergenic	AluY|SINE|Alu	-1311	NM_001144879	3612	Hs.656694	NM_001144878		IMPA1	IMP|IMPA	inositol(myo)-1(or 4)-monophosphatase 1	protein-coding
chr15.63892660.+	chr15	63892660	63892661	+	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	366	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr3.28951352.+	chr3	28951352	28951353	+	0	NA	Intergenic	AluY|SINE|Alu	334583	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr18.41408342.+	chr18	41408342	41408343	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550727	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr13.66584780.-	chr13	66584780	66584781	-	0	NA	Intergenic	AluY|SINE|Alu	814521	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	miscRNA
chr16.30960464.-	chr16	30960464	30960465	-	0	NA	promoter-TSS (NM_152288)	promoter-TSS (NM_152288)	-59	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr17.7452289.+	chr17	7452289	7452290	+	0	NA	promoter-TSS (NM_172089)	promoter-TSS (NM_172089)	-86	NM_172089	407977	Hs.54673	NM_172089	ENSG00000239697	TNFSF12-TNFSF13	TWE-PRIL	TNFSF12-TNFSF13 readthrough	protein-coding
chr12.131127779.+	chr12	131127779	131127780	+	0	NA	Intergenic	Intergenic	-125369	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
chr12.65004264.+	chr12	65004264	65004265	+	0	NA	promoter-TSS (NM_178169)	promoter-TSS (NM_178169)	-29	NR_040718	283349	Hs.643605	NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association (RalGDS/AF-6) domain family member 3	protein-coding
chr16.619900.-	chr16	619900	619901	-	0	NA	promoter-TSS (NM_148920)	promoter-TSS (NM_148920)	68	NM_148920	9091	Hs.741878	NM_004204	ENSG00000007541	PIGQ	GPI1|c407A10.1	"phosphatidylinositol glycan anchor biosynthesis, class Q"	protein-coding
chr7.56109503.-	chr7	56109503	56109504	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9765	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr9.36859989.+	chr9	36859989	36859990	+	0	NA	"intron (NM_016734, intron 8 of 9)"	AluY|SINE|Alu	4316	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	miscRNA
chr3.82554756.-	chr3	82554756	82554757	-	0	NA	Intergenic	MER52A|LTR|ERV1	743806	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr7.155246305.-	chr7	155246305	155246306	-	0	NA	Intergenic	Intergenic	4519	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr20.17896824.+	chr20	17896824	17896825	+	0	NA	Intergenic	AluSz6|SINE|Alu	46765	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	"small nucleolar RNA, C/D box 17"	snoRNA
chr20.61471813.+	chr20	61471813	61471814	+	0	NA	TTS (NM_006602)	TTS (NM_006602)	-4663	NM_080750	100132911	Hs.126248	NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1|dJ885L7.5	"DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1"	protein-coding
chrX.99617559.-	chrX	99617559	99617560	-	0	NA	"intron (NM_020766, intron 2 of 4)"	AluY|SINE|Alu	-47712	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr2.113965290.+	chr2	113965290	113965291	+	0	NA	Intergenic	AluY|SINE|Alu	-27814	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr12.57177868.-	chr12	57177868	57177869	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20760	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr3.179190770.-	chr3	179190770	179190771	-	0	NA	Intergenic	AluSc8|SINE|Alu	21399	NM_021629	59345	Hs.173030	NM_021629		GNB4	-	"guanine nucleotide binding protein (G protein), beta polypeptide 4"	protein-coding
chr8.52446943.+	chr8	52446943	52446944	+	0	NA	"intron (NM_144651, intron 4 of 22)"	SVA_F|Other|Other	275062	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr18.46969351.-	chr18	46969351	46969352	-	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	-17728	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr1.33335733.+	chr1	33335733	33335734	+	0	NA	"intron (NM_001171940, intron 1 of 5)"	"intron (NM_001171940, intron 1 of 5)"	681	NM_153756	252995	Hs.524234	NM_001171940	ENSG00000160097	FNDC5	FRCP2	fibronectin type III domain containing 5	protein-coding
chr1.28965050.-	chr1	28965050	28965051	-	0	NA	"intron (NM_005644, intron 1 of 5)"	AluSx|SINE|Alu	-4554	NM_001135218	6883	Hs.530251	NM_001135218	ENSG00000120656	TAF12	TAF2J|TAFII20	"TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa"	protein-coding
chr7.152386423.-	chr7	152386423	152386424	-	0	NA	Intergenic	AluSp|SINE|Alu	13173	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	-	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding
chr1.17298939.-	chr1	17298939	17298940	-	0	NA	"exon (NM_014675, exon 37 of 37)"	"exon (NM_014675, exon 37 of 37)"	-8234	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr4.8913709.-	chr4	8913709	8913710	-	0	NA	Intergenic	Intergenic	37768	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr3.140660390.-	chr3	140660390	140660391	-	0	NA	promoter-TSS (NM_001104647)	promoter-TSS (NM_001104647)	272	NM_018155	55186	Hs.144130	NM_001104647	ENSG00000114120	SLC25A36	PNC2	"solute carrier family 25 (pyrimidine nucleotide carrier ), member 36"	protein-coding
chr4.3540646.-	chr4	3540646	3540647	-	0	NA	Intergenic	SVA_D|Other|Other	6422	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chr8.58122863.+	chr8	58122863	58122864	+	0	NA	Intergenic	MER50|LTR|ERV1	-8785	NR_038235	100507651	Hs.631151	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	miscRNA
chr9.137722657.-	chr9	137722657	137722658	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18558	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr19.18378252.+	chr19	18378252	18378253	+	0	NA	"exon (NM_025249, exon 3 of 4)"	"exon (NM_025249, exon 3 of 4)"	7067	NM_025249	80726	Hs.732366	NM_001145304	ENSG00000130518	KIAA1683	-	KIAA1683	protein-coding
chr17.7198723.+	chr17	7198723	7198724	+	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	-847	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr6.108315250.+	chr6	108315250	108315251	+	0	NA	Intergenic	AluSz|SINE|Alu	-35768	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr18.49731926.+	chr18	49731926	49731927	+	0	NA	Intergenic	AluY|SINE|Alu	-134616	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr2.1166132.-	chr2	1166132	1166133	-	0	NA	"intron (NM_018968, intron 7 of 16)"	"intron (NM_018968, intron 7 of 16)"	-219578	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr6.134589694.+	chr6	134589694	134589695	+	0	NA	"intron (NM_001143676, intron 1 of 13)"	AluY|SINE|Alu	49502	NM_001143676	6446	Hs.510078	NM_001143676	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
chr2.202045951.+	chr2	202045951	202045952	+	0	NA	Intergenic	Intergenic	-1670	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr2.48079403.+	chr2	48079403	48079404	+	0	NA	"intron (NM_001190274, intron 1 of 22)"	AluSx1|SINE|Alu	36455	NM_025133	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chr21.11149449.-	chr21	11149449	11149450	-	0	NA	Intergenic	AluY|SINE|Alu	50512	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr6.150038847.-	chr6	150038847	150038848	-	0	NA	"intron (NM_001270519, intron 1 of 3)"	CpG	-545	NM_004690	9113	Hs.549084	NM_001270519	ENSG00000131023	LATS1	WARTS|wts	"LATS, large tumor suppressor, homolog 1 (Drosophila)"	protein-coding
chrX.47441877.-	chrX	47441877	47441878	-	0	NA	"intron (NM_003254, intron 1 of 5)"	"intron (NM_003254, intron 1 of 5)"	-187	NM_003254	7076	Hs.522632	NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP	TIMP metallopeptidase inhibitor 1	protein-coding
chr2.905786.+	chr2	905786	905787	+	0	NA	Intergenic	Intergenic	-40768	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr17.1389860.-	chr17	1389860	1389861	-	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	809	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr10.23728423.-	chr10	23728423	23728424	-	0	NA	"exon (NM_001145373, exon 1 of 1)"	"exon (NM_001145373, exon 1 of 1)"	-225	NM_001145373	220213	Hs.499042	NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU domain containing 1	protein-coding
chr20.61371661.-	chr20	61371661	61371662	-	0	NA	"intron (NM_002531, intron 1 of 3)"	"intron (NM_002531, intron 1 of 3)"	-31472	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
chr12.96314631.-	chr12	96314631	96314632	-	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	-21797	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chr22.30641747.+	chr22	30641747	30641748	+	0	NA	"intron (NM_002309, intron 1 of 2)"	"intron (NM_002309, intron 1 of 2)"	1093	NM_001257135	3976	Hs.2250	NM_001257135	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
chr5.1770159.-	chr5	1770159	1770160	-	0	NA	Intergenic	L1MB5|LINE|L1	-29797	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr19.10041248.-	chr19	10041248	10041249	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5822	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr1.181058718.+	chr1	181058718	181058719	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1080	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr14.75593504.+	chr14	75593504	75593505	+	0	NA	"exon (NM_033116, exon 1 of 22)"	"exon (NM_033116, exon 1 of 22)"	274	NM_033116	91754	Hs.7200	NM_033116	ENSG00000119638	NEK9	NERCC|NERCC1|Nek8	NIMA-related kinase 9	protein-coding
chr8.128328729.-	chr8	128328729	128328730	-	0	NA	Intergenic	Intergenic	99128	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr19.14095992.-	chr19	14095992	14095993	-	0	NA	"intron (NM_002918, intron 2 of 20)"	"intron (NM_002918, intron 2 of 20)"	-21142	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	"regulatory factor X, 1 (influences HLA class II expression)"	protein-coding
chr20.29518634.-	chr20	29518634	29518635	-	0	NA	Intergenic	SST1|Satellite|centr	93245	NR_003579	284802	Hs.653099	NR_003579	ENSG00000149531	FRG1B	C20orf80|bA348I14.2	"FSHD region gene 1 family, member B"	pseudo
chr6.126100194.-	chr6	126100194	126100195	-	0	NA	Intergenic	AluY|SINE|Alu	2113	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr4.47673805.+	chr4	47673805	47673806	+	0	NA	"intron (NM_006587, intron 10 of 21)"	AluY|SINE|Alu	166254	NM_006587	10699	Hs.518618	NM_006587	ENSG00000145244	CORIN	ATC2|CRN|Lrp4|PEE5|TMPRSS10	"corin, serine peptidase"	protein-coding
chr2.240361408.+	chr2	240361408	240361409	+	0	NA	Intergenic	Intergenic	-38765	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr3.29051446.-	chr3	29051446	29051447	-	0	NA	Intergenic	AluSc8|SINE|Alu	271357	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr17.30414158.-	chr17	30414158	30414159	-	0	NA	Intergenic	FLAM_A|SINE|Alu	-46803	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
chr13.56400610.+	chr13	56400610	56400611	+	0	NA	Intergenic	AluY|SINE|Alu	652021	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr5.78890169.-	chr5	78890169	78890170	-	0	NA	Intergenic	AluY|SINE|Alu	18074	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr7.104040189.-	chr7	104040189	104040190	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71085	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr17.76278362.+	chr17	76278362	76278363	+	0	NA	Intergenic	AluY|SINE|Alu	-3789	NR_073178	100996291	Hs.744493	NR_073178	ENSG00000204277	LOC100996291	-	uncharacterized LOC100996291	miscRNA
chr11.109865783.+	chr11	109865783	109865784	+	0	NA	Intergenic	Intergenic	-98304	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
chr19.13497327.-	chr19	13497327	13497328	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119947	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr5.1858793.+	chr5	1858793	1858794	+	0	NA	Intergenic	Intergenic	24087	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr3.46717927.-	chr3	46717927	46717928	-	0	NA	"intron (NM_147129, intron 18 of 25)"	"intron (NM_147129, intron 18 of 25)"	-972	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr5.86548500.+	chr5	86548500	86548501	+	0	NA	Intergenic	AluSc8|SINE|Alu	-15570	NM_002890	5921	Hs.664080	NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP	RAS p21 protein activator (GTPase activating protein) 1	protein-coding
chr4.726949.+	chr4	726949	726950	+	0	NA	"intron (NM_006315, intron 3 of 10)"	"intron (NM_006315, intron 3 of 10)"	27376	NM_006315	10336	Hs.731755	NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
chr13.31023963.+	chr13	31023963	31023964	+	0	NA	Intergenic	AluSq2|SINE|Alu	16118	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr17.6371753.-	chr17	6371753	6371754	-	0	NA	"intron (NM_001165966, intron 12 of 18)"	"intron (NM_001165966, intron 12 of 18)"	-24018	NM_019013	54478	Hs.592116	NM_001195228	ENSG00000129195	FAM64A	CATS|RCS1	"family with sequence similarity 64, member A"	protein-coding
chr4.160748531.-	chr4	160748531	160748532	-	0	NA	Intergenic	AluSx1|SINE|Alu	-559533	NM_014247	9693	Hs.113912	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chr10.46971824.-	chr10	46971824	46971825	-	0	NA	Intergenic	Intergenic	1223	NM_181519	83849	Hs.696346	NM_031912	ENSG00000204176	SYT15	CHR10SYT|sytXV	synaptotagmin XV	protein-coding
chr19.38755113.-	chr19	38755113	38755114	-	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	-15	NM_021102	10653	Hs.31439	NM_001166103	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	"serine peptidase inhibitor, Kunitz type, 2"	protein-coding
chr16.1123303.-	chr16	1123303	1123304	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-547	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr21.47343988.+	chr21	47343988	47343989	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-57675	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr2.99061840.-	chr2	99061840	99061841	-	0	NA	"intron (NM_001134225, intron 1 of 24)"	CpG	-519	NM_001134224	3631	Hs.469386	NM_001134224	ENSG00000040933	INPP4A	INPP4|TVAS1	"inositol polyphosphate-4-phosphatase, type I, 107kDa"	protein-coding
chr16.78282871.+	chr16	78282871	78282872	+	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	149544	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr18.77627519.-	chr18	77627519	77627520	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3851	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr19.46195532.-	chr19	46195532	46195533	-	0	NA	promoter-TSS (NM_017659)	promoter-TSS (NM_017659)	89	NM_177542	6633	Hs.515472	NM_004597	ENSG00000125743	SNRPD2	SMD2|SNRPD1|Sm-D2	small nuclear ribonucleoprotein D2 polypeptide 16.5kDa	protein-coding
chr8.27695267.-	chr8	27695267	27695268	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-82	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr12.132293454.-	chr12	132293454	132293455	-	0	NA	Intergenic	CpG	19487	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr7.149419746.-	chr7	149419746	149419747	-	0	NA	"intron (NM_032534, intron 6 of 16)"	"intron (NM_032534, intron 6 of 16)"	-7598	NM_032534	84626	Hs.299560	NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
chr1.54966500.+	chr1	54966500	54966501	+	0	NA	Intergenic	Intergenic	-47307	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr22.43238135.+	chr22	43238135	43238136	+	0	NA	"intron (NM_001142293, intron 2 of 14)"	AluSp|SINE|Alu	15273	NM_001142293	26286	Hs.685225	NM_001142293	ENSG00000242247	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
chr3.36421963.-	chr3	36421963	36421964	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	134	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr3.124468922.+	chr3	124468922	124468923	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19709	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr2.152219141.+	chr2	152219141	152219142	+	0	NA	"intron (NM_007115, intron 1 of 5)"	AluY|SINE|Alu	5035	NM_007115	7130	Hs.437322	NM_007115	ENSG00000123610	TNFAIP6	TSG-6|TSG6	"tumor necrosis factor, alpha-induced protein 6"	protein-coding
chr16.1868659.+	chr16	1868659	1868660	+	0	NA	"intron (NM_005326, intron 5 of 8)"	"intron (NM_005326, intron 5 of 8)"	8536	NM_005326	3029	Hs.157394	NM_001040427	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
chr9.108210399.-	chr9	108210399	108210400	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-74	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr6.74427485.+	chr6	74427485	74427486	+	0	NA	"intron (NM_001159587, intron 2 of 32)"	AluY|SINE|Alu	21971	NM_133493	135228	Hs.399891	NM_001159587	ENSG00000156535	CD109	CPAMD7|RP11-525G3.1	CD109 molecule	protein-coding
chr22.51001374.+	chr22	51001374	51001375	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	-46	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr1.26672305.+	chr1	26672305	26672306	+	0	NA	"exon (NM_001039775, exon 2 of 20)"	"exon (NM_001039775, exon 2 of 20)"	8316	NM_001039775	55057	Hs.128738	NM_017977		AIM1L	CRYBG2	absent in melanoma 1-like	protein-coding
chr12.132116839.+	chr12	132116839	132116840	+	0	NA	Intergenic	L1ME1|LINE|L1	-78793	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr19.50033435.-	chr19	50033435	50033436	-	0	NA	"intron (NM_020650, intron 2 of 6)"	AluSx|SINE|Alu	-2560	NM_020650	57333	Hs.567550	NM_020650	ENSG00000142552	RCN3	RLP49	"reticulocalbin 3, EF-hand calcium binding domain"	protein-coding
chr6.127845950.-	chr6	127845950	127845951	-	0	NA	Intergenic	AluY|SINE|Alu	5450	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr17.18755289.-	chr17	18755289	18755290	-	0	NA	Intergenic	AluSp|SINE|Alu	4323	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr1.31773681.+	chr1	31773681	31773682	+	0	NA	"intron (NM_016505, intron 1 of 7)"	AluSq2|SINE|Alu	3839	NM_016505	51538	Hs.524094	NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|RP11-266K22.1|pNO40	"zinc finger, CCHC domain containing 17"	protein-coding
chr9.136951720.+	chr9	136951720	136951721	+	0	NA	Intergenic	AluY|SINE|Alu	-18579	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr21.47343987.-	chr21	47343987	47343988	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57676	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr5.1137817.+	chr5	1137817	1137818	+	0	NA	Intergenic	Intergenic	-25645	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr19.1045827.+	chr19	1045827	1045828	+	0	NA	"intron (NM_019112, intron 12 of 46)"	AluSc8|SINE|Alu	5725	NM_019112	10347	Hs.134514	NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX	"ATP-binding cassette, sub-family A (ABC1), member 7"	protein-coding
chr1.44399463.-	chr1	44399463	44399464	-	0	NA	"5' UTR (NM_001136215, exon 1 of 4)"	"5' UTR (NM_001136215, exon 1 of 4)"	-471	NM_057090	9048	Hs.632404	NM_001136215	ENSG00000117407	ARTN	ENOVIN|EVN|NBN	artemin	protein-coding
chr19.16612709.+	chr19	16612709	16612710	+	0	NA	"intron (NM_032207, intron 2 of 8)"	"intron (NM_032207, intron 2 of 8)"	5504	NM_032207	84167	Hs.631627	NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
chr17.79611158.+	chr17	79611158	79611159	+	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	1809	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr4.37548420.+	chr4	37548420	37548421	+	0	NA	"intron (NM_001104629, intron 1 of 3)"	HERVE_a-int|LTR|ERV1	-37435	NM_018302	55286	Hs.107527	NM_001104629		C4orf19	-	chromosome 4 open reading frame 19	protein-coding
chr14.102954948.+	chr14	102954948	102954949	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21180	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr12.56325823.+	chr12	56325823	56325824	+	0	NA	promoter-TSS (NM_201554)	promoter-TSS (NM_201554)	11	NM_201554	1606	Hs.524488	NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	"diacylglycerol kinase, alpha 80kDa"	protein-coding
chr12.50448244.-	chr12	50448244	50448245	-	0	NA	Intergenic	AluSx|SINE|Alu	3176	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr14.93327556.+	chr14	93327556	93327557	+	0	NA	Intergenic	Intergenic	-61889	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
chr11.17905667.-	chr11	17905667	17905668	-	0	NA	"intron (NM_012139, intron 9 of 10)"	CpG	-128970	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chrX.53125759.+	chrX	53125759	53125760	+	0	NA	Intergenic	AluJb|SINE|Alu	14217	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.47596431.+	chr2	47596431	47596432	+	0	NA	"5' UTR (NM_002354, exon 1 of 9)"	"5' UTR (NM_002354, exon 1 of 9)"	144	NM_002354	4072	Hs.542050	NM_002354	ENSG00000119888	EPCAM	DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1	epithelial cell adhesion molecule	protein-coding
chr10.135031517.-	chr10	135031517	135031518	-	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	12261	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr10.94122260.+	chr10	94122260	94122261	+	0	NA	Intergenic	AluSg|SINE|Alu	-56158	NR_038243	100507674	Hs.742186	NR_038243		MARK2P9	-	MAP/microtubule affinity-regulating kinase 2 pseudogene 9	pseudo
chr8.94805094.-	chr8	94805094	94805095	-	0	NA	"intron (NM_153704, intron 15 of 27)"	AluY|SINE|Alu	-38022	NM_001142301	91147	Hs.116240	NM_001142301	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
chr13.96681140.+	chr13	96681140	96681141	+	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	24596	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr5.78532616.-	chr5	78532616	78532617	-	0	NA	"exon (NM_152405, exon 1 of 11)"	"exon (NM_152405, exon 1 of 11)"	-691	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHDC1L3	"junction mediating and regulatory protein, p53 cofactor"	protein-coding
chr5.37295975.-	chr5	37295975	37295976	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46445	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr2.45156733.+	chr2	45156733	45156734	+	0	NA	Intergenic	CpG	-12304	NM_005413	6496	Hs.567336	NM_005413	ENSG00000138083	SIX3	HPE2	SIX homeobox 3	protein-coding
chr12.56579405.-	chr12	56579405	56579406	-	0	NA	"intron (NM_003075, intron 3 of 27)"	AluSx1|SINE|Alu	-3946	NM_139067	6601	Hs.632717	NM_001130420		SMARCC2	BAF170|CRACC2|Rsc8	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2"	protein-coding
chr20.61425553.+	chr20	61425553	61425554	+	0	NA	Intergenic	MIRc|SINE|MIR	-2252	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chr8.14882359.-	chr8	14882359	14882360	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171340	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr1.236252104.-	chr1	236252104	236252105	-	0	NA	Intergenic	Intergenic	23623	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr7.55379471.+	chr7	55379471	55379472	+	0	NA	Intergenic	SVA_D|Other|Other	-53670	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr17.1053791.+	chr17	1053791	1053792	+	0	NA	"intron (NM_001159746, intron 1 of 22)"	"intron (NM_001159746, intron 1 of 22)"	29375	NM_021962	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr20.45162739.-	chr20	45162739	45162740	-	0	NA	Intergenic	MER52C|LTR|ERV1	-16474	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
chr1.205313128.+	chr1	205313128	205313129	+	0	NA	"intron (NM_018203, intron 1 of 5)"	CpG	13000	NM_018203	55220	Hs.10414	NM_001271863	ENSG00000162873	KLHDC8A	-	kelch domain containing 8A	protein-coding
chr3.124468927.+	chr3	124468927	124468928	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19714	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr21.37865450.+	chr21	37865450	37865451	+	0	NA	"intron (NM_001146077, intron 2 of 2)"	"intron (NM_001146077, intron 2 of 2)"	-13062	NM_001146079	23562	Hs.741857	NM_001146077	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
chr8.67618035.-	chr8	67618035	67618036	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6618	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr1.171662927.-	chr1	171662927	171662928	-	0	NA	Intergenic	SVA_C|Other|Other	41154	NM_000261	4653	Hs.436037	NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	"myocilin, trabecular meshwork inducible glucocorticoid response"	protein-coding
chr7.1542242.-	chr7	1542242	1542243	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1776	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr8.143858624.+	chr8	143858624	143858625	+	0	NA	promoter-TSS (NM_177476)	promoter-TSS (NM_177476)	120	NM_177477	66004	Hs.604828	NM_023946	ENSG00000180155	LYNX1	SLURP2	Ly6/neurotoxin 1	protein-coding
chr17.4435049.-	chr17	4435049	4435050	-	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	-23632	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr16.632110.-	chr16	632110	632111	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7247	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr9.107727109.-	chr9	107727109	107727110	-	0	NA	Intergenic	AluYa5|SINE|Alu	36582	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr21.20831246.+	chr21	20831246	20831247	+	0	NA	Intergenic	AluYf4|SINE|Alu	-1055276	NM_002772	5651	Hs.149473	NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	"transmembrane protease, serine 15"	protein-coding
chr2.131555308.-	chr2	131555308	131555309	-	0	NA	Intergenic	CpG	-41444	NM_001105195	205147	Hs.369289	NM_001105193	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
chr7.13141818.+	chr7	13141818	13141819	+	0	NA	Intergenic	SVA_D|Other|Other	414907	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr6.138984660.-	chr6	138984660	138984661	-	0	NA	Intergenic	AluSp|SINE|Alu	28145	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr2.9934269.-	chr2	9934269	9934270	-	0	NA	Intergenic	Intergenic	49302	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr15.92290023.+	chr15	92290023	92290024	+	0	NA	Intergenic	AluY|SINE|Alu	-106915	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr18.11086409.-	chr18	11086409	11086410	-	0	NA	"intron (NM_022068, intron 1 of 51)"	AluY|SINE|Alu	-62352	NM_022068	63895	Hs.436902	NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771	piezo-type mechanosensitive ion channel component 2	protein-coding
chr22.38315131.-	chr22	38315131	38315132	-	0	NA	"exon (NM_033386, exon 5 of 16)"	"exon (NM_033386, exon 5 of 16)"	-12976	NM_033386	85377	Hs.517610	NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL-like 1	protein-coding
chr10.30145013.-	chr10	30145013	30145014	-	0	NA	Intergenic	AluSx3|SINE|Alu	120283	NM_003174	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
chr6.84954080.+	chr6	84954080	84954081	+	0	NA	Intergenic	SVA_D|Other|Other	-16745	NM_014895	22832	Hs.485865	NM_014895	ENSG00000135315	KIAA1009	C6orf84|QN1	KIAA1009	protein-coding
chr1.8021850.-	chr1	8021850	8021851	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-136	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr8.8751077.+	chr8	8751077	8751078	+	0	NA	promoter-TSS (NM_004225)	promoter-TSS (NM_004225)	54	NM_004225	9258	Hs.379414	NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
chr16.1123371.-	chr16	1123371	1123372	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-615	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr20.57575086.+	chr20	57575086	57575087	+	0	NA	"intron (NM_001336, intron 3 of 5)"	AluYk4|SINE|Alu	7223	NM_001336	1522	Hs.252549	NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
chr19.2427752.-	chr19	2427752	2427753	-	0	NA	TTS (NM_032737)	TTS (NM_032737)	-123	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr11.66997298.+	chr11	66997298	66997299	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10208	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chrX.37894865.-	chrX	37894865	37894866	-	0	NA	"intron (NM_138780, intron 2 of 16)"	"intron (NM_138780, intron 2 of 16)"	-2078	NM_001163334	94122	Hs.662334	NM_001163334	ENSG00000147041	SYTL5	slp5	synaptotagmin-like 5	protein-coding
chr7.4998635.+	chr7	4998635	4998636	+	0	NA	"exon (NM_198403, exon 1 of 7)"	"exon (NM_198403, exon 1 of 7)"	209	NR_072989	221938	Hs.558694	NM_001100600	ENSG00000136297	MMD2	PAQR10	monocyte to macrophage differentiation-associated 2	protein-coding
chr8.145159316.+	chr8	145159316	145159317	+	0	NA	promoter-TSS (NR_038270)	promoter-TSS (NR_038270)	11	NM_032272	84232	Hs.19673	NM_032272	ENSG00000179632	MAF1	-	MAF1 homolog (S. cerevisiae)	protein-coding
chr9.77401562.+	chr9	77401562	77401563	+	0	NA	"intron (NM_001177310, intron 20 of 38)"	AluY|SINE|Alu	100701	NM_001177311	140803	Hs.272225	NM_001177310	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	"transient receptor potential cation channel, subfamily M, member 6"	protein-coding
chrX.110926758.+	chrX	110926758	110926759	+	0	NA	"intron (NM_001257239, intron 2 of 3)"	AluSx|SINE|Alu	1873	NM_001257239	79868	Hs.443061	NM_001039210	ENSG00000101901	ALG13	CDG1S|CXorf45|GLT28D1|MDS031|TDRD13|YGL047W	"ALG13, UDP-N-acetylglucosaminyltransferase subunit"	protein-coding
chr20.61456896.+	chr20	61456896	61456897	+	0	NA	"intron (NM_001853, intron 12 of 31)"	"intron (NM_001853, intron 12 of 31)"	8482	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chr10.26961171.+	chr10	26961171	26961172	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25424	NM_014317	23590	Hs.558468	NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1	"prenyl (decaprenyl) diphosphate synthase, subunit 1"	protein-coding
chr9.21968318.+	chr9	21968318	21968319	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1180	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr2.133015080.+	chr2	133015080	133015081	+	0	NA	promoter-TSS (NR_031608)	promoter-TSS (NR_031608)	-427	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr3.8721158.-	chr3	8721158	8721159	-	0	NA	Intergenic	Intergenic	27394	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chrX.20694430.-	chrX	20694430	20694431	-	0	NA	Intergenic	AluY|SINE|Alu	409680	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr1.2254150.+	chr1	2254150	2254151	+	0	NA	"intron (NM_024848, intron 13 of 13)"	CpG	29950	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr11.66997291.+	chr11	66997291	66997292	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10215	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chrX.153151863.+	chrX	153151863	153151864	+	0	NA	Intergenic	CpG	-10464	NM_001143963	3897	Hs.522818	NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
chr4.42658279.+	chr4	42658279	42658280	+	0	NA	"intron (NM_006095, intron 1 of 36)"	CpG	843	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr16.31368066.-	chr16	31368066	31368067	-	0	NA	"intron (NM_000887, intron 3 of 29)"	"intron (NM_000887, intron 3 of 29)"	-1557	NM_000887	3687	Hs.248472	NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	"integrin, alpha X (complement component 3 receptor 4 subunit)"	protein-coding
chrX.42144960.-	chrX	42144960	42144961	-	0	NA	Intergenic	SVA_D|Other|Other	362673	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr2.128532322.+	chr2	128532322	128532323	+	0	NA	"intron (NM_018383, intron 1 of 21)"	AluY|SINE|Alu	36439	NM_001006622	55339	Hs.554831	NM_001006622	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
chr16.89034092.+	chr16	89034092	89034093	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9412	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr6.151771576.-	chr6	151771576	151771577	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1740	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr3.196618966.+	chr3	196618966	196618967	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluJb|SINE|Alu	24239	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr19.48423014.-	chr19	48423014	48423015	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1328	NR_004435	100126798	Hs.579631	NR_004435		SNAR-A1	SNAR-A53113498	small ILF3/NF90-associated RNA A1	snRNA
chr3.149374882.-	chr3	149374882	149374883	-	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	-930	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr2.213546639.-	chr2	213546639	213546640	-	0	NA	Intergenic	AluSc8|SINE|Alu	143287	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr7.63233358.-	chr7	63233358	63233359	-	0	NA	Intergenic	Intergenic	-151890	NR_036270	100422848		NR_036270	ENSG00000265214	MIR4283-2	-	microRNA 4283-2	miscRNA
chr19.7426247.-	chr19	7426247	7426248	-	0	NA	Intergenic	AluSx|SINE|Alu	33752	NM_015318	23370	Hs.736818	NM_001130955	ENSG00000104880	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
chr11.9243424.+	chr11	9243424	9243425	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43449	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chrX.112142829.-	chrX	112142829	112142830	-	0	NA	Intergenic	AluY|SINE|Alu	58786	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr3.47744579.+	chr3	47744579	47744580	+	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	78826	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr12.7858614.+	chr12	7858614	7858615	+	0	NA	Intergenic	CpG	-5475	NM_199286	359787	Hs.131358	NM_199286	ENSG00000187569	DPPA3	STELLA	developmental pluripotency associated 3	protein-coding
chr10.133869121.+	chr10	133869121	133869122	+	0	NA	Intergenic	Intergenic	-49192	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr10.73848187.+	chr10	73848187	73848188	+	0	NA	"5' UTR (NM_001134434, exon 2 of 3)"	"5' UTR (NM_001134434, exon 2 of 3)"	344	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr17.2323420.+	chr17	2323420	2323421	+	0	NA	"exon (NM_024086, exon 10 of 10)"	"exon (NM_024086, exon 10 of 10)"	-4690	NR_028335	284009	Hs.632244	NR_028335		LOC284009	-	uncharacterized LOC284009	miscRNA
chr7.61969282.+	chr7	61969282	61969283	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795152	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chrX.18117009.-	chrX	18117009	18117010	-	0	NA	Intergenic	Intergenic	-122015	NM_153346	139105	Hs.403802	NM_001184767	ENSG00000177324	BEND2	CXorf20	BEN domain containing 2	protein-coding
chr11.31847817.-	chr11	31847817	31847818	-	0	NA	"intron (NR_033971, intron 1 of 2)"	CpG	8308	NM_001258462	5080	Hs.611376	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|MGDA|WAGR	paired box 6	protein-coding
chr1.207842899.+	chr1	207842899	207842900	+	0	NA	"intron (NM_175710, intron 1 of 11)"	CpG	24441	NM_175710	1379	Hs.655194	NM_175710	ENSG00000197721	CR1L	-	complement component (3b/4b) receptor 1-like	protein-coding
chr8.6812549.-	chr8	6812549	6812550	-	0	NA	Intergenic	AluSp|SINE|Alu	3428	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr16.209962.-	chr16	209962	209963	-	0	NA	Intergenic	Intergenic	6011	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr21.47343956.+	chr21	47343956	47343957	+	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	-57707	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr15.27265718.-	chr15	27265718	27265719	-	0	NA	"intron (NM_001270873, intron 2 of 5)"	AluY|SINE|Alu	-49289	NM_033223	2567	Hs.569475	NM_001270873	ENSG00000182256	GABRG3	-	"gamma-aminobutyric acid (GABA) A receptor, gamma 3"	protein-coding
chr20.48080581.+	chr20	48080581	48080582	+	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	18600	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr7.42951566.+	chr7	42951566	42951567	+	0	NA	"exon (NM_001099858, exon 1 of 2)"	"exon (NM_001099858, exon 1 of 2)"	123	NM_001099858	79020	Hs.698120	NM_001099858	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
chrX.132930073.+	chrX	132930073	132930074	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189600	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr2.213402715.+	chr2	213402715	213402716	+	0	NA	"intron (NM_005235, intron 1 of 27)"	CpG	637	NM_001042599	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr7.13141821.+	chr7	13141821	13141822	+	0	NA	Intergenic	SVA_D|Other|Other	414910	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr21.11149437.-	chr21	11149437	11149438	-	0	NA	Intergenic	AluY|SINE|Alu	50500	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr2.905547.-	chr2	905547	905548	-	0	NA	Intergenic	Intergenic	41007	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr10.133869264.+	chr10	133869264	133869265	+	0	NA	Intergenic	Intergenic	-49049	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr6.105456268.+	chr6	105456268	105456269	+	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	51345	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr16.544891.-	chr16	544891	544892	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20041	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr1.224601826.-	chr1	224601826	224601827	-	0	NA	"intron (NM_025160, intron 6 of 13)"	AluSq|SINE|Alu	15813	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	miscRNA
chr8.3501067.-	chr8	3501067	3501068	-	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	-1351261	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr9.38829873.+	chr9	38829873	38829874	+	0	NA	Intergenic	AluY|SINE|Alu	208788	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr7.5244730.-	chr7	5244730	5244731	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9170	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr19.14041768.+	chr19	14041768	14041769	+	0	NA	TTS (NM_024825)	TTS (NM_024825)	7521	NM_024825	79883	Hs.448497	NM_001146254	ENSG00000132000	PODNL1	SLRR5B	podocan-like 1	protein-coding
chr19.1871380.+	chr19	1871380	1871381	+	0	NA	Intergenic	Intergenic	-7816	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr20.62316397.-	chr20	62316397	62316398	-	0	NA	"intron (NR_037882, intron 14 of 37)"	AluJb|SINE|Alu	11607	NM_003823	8771	Hs.744285	NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	"tumor necrosis factor receptor superfamily, member 6b, decoy"	protein-coding
chr16.89052785.+	chr16	89052785	89052786	+	0	NA	Intergenic	Intergenic	-9281	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr17.2323426.-	chr17	2323426	2323427	-	0	NA	"exon (NM_024086, exon 10 of 10)"	"exon (NM_024086, exon 10 of 10)"	4696	NR_028335	284009	Hs.632244	NR_028335		LOC284009	-	uncharacterized LOC284009	miscRNA
chr4.93787992.+	chr4	93787992	93787993	+	0	NA	"intron (NM_001510, intron 2 of 15)"	AluY|SINE|Alu	562442	NM_001510	2895	Hs.480281	NM_001510	ENSG00000152208	GRID2	GluD2	"glutamate receptor, ionotropic, delta 2"	protein-coding
chr20.31565646.+	chr20	31565646	31565647	+	0	NA	Intergenic	Intergenic	26593	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
chr17.78559384.+	chr17	78559384	78559385	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40759	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr21.47838722.-	chr21	47838722	47838723	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40140	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chrX.19862936.+	chrX	19862936	19862937	+	0	NA	"intron (NM_031892, intron 1 of 17)"	AluSg7|SINE|Alu	42808	NM_031892	30011	Hs.726365	NM_001024666	ENSG00000147010	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
chr7.13901853.+	chr7	13901853	13901854	+	0	NA	Intergenic	AluY|SINE|Alu	124286	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr7.1147508.+	chr7	1147508	1147509	+	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	19785	NM_001098201	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr4.1626819.-	chr4	1626819	1626820	-	0	NA	Intergenic	CpG	-58899	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr6.57322585.+	chr6	57322585	57322586	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140163	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr3.36421985.-	chr3	36421985	36421986	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	112	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr9.36596642.+	chr9	36596642	36596643	+	0	NA	"intron (NR_046337, intron 4 of 17)"	AluSp|SINE|Alu	23783	NR_046337	9833	Hs.184339	NM_001256685	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
chr4.88257204.-	chr4	88257204	88257205	-	0	NA	TTS (NM_016245)	TTS (NM_016245)	13148	NM_178135	345275	Hs.284414	NM_001136230	ENSG00000170509	HSD17B13	NIIL497|SCDR9|SDR16C3	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding
chr7.16632875.+	chr7	16632875	16632876	+	0	NA	Intergenic	AluJb|SINE|Alu	52567	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr5.150158624.-	chr5	150158624	150158625	-	0	NA	"intron (NM_032947, intron 1 of 1)"	CpG	-1116	NM_032947	85027	Hs.29444	NM_032947	ENSG00000256235	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
chr1.3228546.-	chr1	3228546	3228547	-	0	NA	"intron (NM_199454, intron 3 of 16)"	"intron (NM_199454, intron 3 of 16)"	142601	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr13.21872269.+	chr13	21872269	21872270	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	5	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr9.86597311.+	chr9	86597311	86597312	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1674	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr22.50876239.-	chr22	50876239	50876240	-	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	-37225	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr20.61425652.-	chr20	61425652	61425653	-	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	2153	NM_018270	55257	Hs.590870	NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG/MORF4L binding protein	protein-coding
chrX.39680367.-	chrX	39680367	39680368	-	0	NA	Intergenic	CpG	-276352	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chrX.49126764.-	chrX	49126764	49126765	-	0	NA	"exon (NM_033215, exon 1 of 4)"	"exon (NM_033215, exon 1 of 4)"	-458	NM_001184745	89801	Hs.433652	NM_001184745	ENSG00000049769	PPP1R3F	HB2E|R3F	"protein phosphatase 1, regulatory subunit 3F"	protein-coding
chr1.3003150.+	chr1	3003150	3003151	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	17408	NM_199454	63976	Hs.99500	NM_022114	ENSG00000142611	PRDM16	MEL1|PFM13	PR domain containing 16	protein-coding
chr7.2297159.+	chr7	2297159	2297160	+	0	NA	"intron (NM_013321, intron 8 of 10)"	CpG-23885	14619	NM_198953	4521	Hs.534331	NM_002452	ENSG00000106268	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
chr3.122466695.+	chr3	122466695	122466696	+	0	NA	"intron (NM_024610, intron 6 of 7)"	SVA_D|Other|Other	45971	NM_024610	79663	Hs.29169	NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB (heat shock 27kDa) associated protein 1	protein-coding
chr2.240750922.-	chr2	240750922	240750923	-	0	NA	Intergenic	Intergenic	-66368	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chr7.2943518.+	chr7	2943518	2943519	+	0	NA	Intergenic	Intergenic	-59559	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr8.57359031.-	chr8	57359031	57359032	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-251	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr6.46742360.-	chr6	46742360	46742361	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18734	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr12.50448247.-	chr12	50448247	50448248	-	0	NA	Intergenic	AluSx|SINE|Alu	3173	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr14.101693646.-	chr14	101693646	101693647	-	0	NA	Intergenic	Intergenic	-157398	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr19.17004140.+	chr19	17004140	17004141	+	0	NA	"exon (NM_015692, exon 42 of 42)"	"exon (NM_015692, exon 42 of 42)"	4314	NM_003950	9002	Hs.137574	NM_003950		F2RL3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding
chr6.55775040.-	chr6	55775040	55775041	-	0	NA	Intergenic	SVA_D|Other|Other	34665	NM_021073	653	Hs.296648	NM_021073		BMP5	-	bone morphogenetic protein 5	protein-coding
chr7.82072947.-	chr7	82072947	82072948	-	0	NA	promoter-TSS (NM_000722)	promoter-TSS (NM_000722)	-84	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A	"calcium channel, voltage-dependent, alpha 2/delta subunit 1"	protein-coding
chr8.27695264.-	chr8	27695264	27695265	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-85	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr17.58677814.+	chr17	58677814	58677815	+	0	NA	"exon (NM_003620, exon 1 of 6)"	"exon (NM_003620, exon 1 of 6)"	270	NM_003620	8493	Hs.286073	NM_003620		PPM1D	PP2C-DELTA|WIP1	"protein phosphatase, Mg2+/Mn2+ dependent, 1D"	protein-coding
chr22.38336352.-	chr22	38336352	38336353	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13302	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr3.9429632.+	chr3	9429632	9429633	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9542	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chrX.39680402.-	chrX	39680402	39680403	-	0	NA	Intergenic	CpG	-276317	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr9.133536389.-	chr9	133536389	133536390	-	0	NA	Intergenic	CpG	3592	NM_021619	59335	Hs.495311	NM_021619	ENSG00000130711	PRDM12	PFM9	PR domain containing 12	protein-coding
chr11.6429119.+	chr11	6429119	6429120	+	0	NA	"intron (NM_001257324, intron 1 of 7)"	AluYb8|SINE|Alu	-2228	NM_001257320	322	Hs.372840	NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	protein-coding
chr18.45688063.-	chr18	45688063	45688064	-	0	NA	Intergenic	CpG	24383	NM_001039360	201501	Hs.732162	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
chr6.159416802.-	chr6	159416802	159416803	-	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	-4396	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr18.20879343.+	chr18	20879343	20879344	+	0	NA	"intron (NM_032933, intron 14 of 14)"	L3|LINE|CR1	138582	NM_032933	85019	Hs.137562	NM_032933	ENSG00000134490	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
chr6.2765768.-	chr6	2765768	2765769	-	0	NA	"5' UTR (NM_020135, exon 1 of 7)"	"5' UTR (NM_020135, exon 1 of 7)"	-102	NM_130395	56897	Hs.236828	NM_020135	ENSG00000124535	WRNIP1	RP11-420G6.2|WHIP|bA420G6.2	Werner helicase interacting protein 1	protein-coding
chr1.17298987.-	chr1	17298987	17298988	-	0	NA	"3' UTR (NM_014675, exon 37 of 37)"	"3' UTR (NM_014675, exon 37 of 37)"	-8186	NM_001135248	4237	Hs.389137	XM_003960903	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
chr2.10804231.-	chr2	10804231	10804232	-	0	NA	"intron (NM_001261392, intron 7 of 19)"	AluSx|SINE|Alu	-25882	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr16.656939.+	chr16	656939	656940	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	"intron (NM_001172663, intron 2 of 6)"	16766	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr17.47364088.-	chr17	47364088	47364089	-	0	NA	Intergenic	AluSx|SINE|Alu	-38483	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chr12.113772875.+	chr12	113772875	113772876	+	0	NA	promoter-TSS (NM_024959)	promoter-TSS (NM_024959)	50	NM_024959	80024	Hs.286194	NM_024959	ENSG00000089060	SLC24A6	NCKX6|NCLX	"solute carrier family 24 (sodium/lithium/calcium exchanger), member 6"	protein-coding
chr2.183903207.-	chr2	183903207	183903208	-	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	-22	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr21.35784166.-	chr21	35784166	35784167	-	0	NA	Intergenic	LTR41B|LTR|ERVL	-36417	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr6.162998501.-	chr6	162998501	162998502	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149663	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr3.20070740.-	chr3	20070740	20070741	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10784	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr4.177146926.-	chr4	177146926	177146927	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30104	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr7.100487525.+	chr7	100487525	100487526	+	0	NA	promoter-TSS (NM_001015072)	promoter-TSS (NM_001015072)	-186	NM_001015072	402682	Hs.534845	NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1-specific peptidase 1 (non-functional)	protein-coding
chr2.122878827.-	chr2	122878827	122878828	-	0	NA	Intergenic	AluY|SINE|Alu	-365706	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chrX.137770418.-	chrX	137770418	137770419	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20464	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr14.80915406.+	chr14	80915406	80915407	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-218009	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr17.74581773.+	chr17	74581773	74581774	+	0	NA	"exon (NM_006456, exon 1 of 9)"	"exon (NM_006456, exon 1 of 9)"	372	NM_006456	10610	Hs.592105	NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2"	protein-coding
chr2.85638938.-	chr2	85638938	85638939	-	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	1118	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr16.88387034.+	chr16	88387034	88387035	+	0	NA	Intergenic	L2b|LINE|L2	-106845	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr2.10424825.+	chr2	10424825	10424826	+	0	NA	Intergenic	Intergenic	-18205	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr10.134034467.-	chr10	134034467	134034468	-	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	-34053	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr19.58662129.+	chr19	58662129	58662130	+	0	NA	promoter-TSS (NM_024620)	promoter-TSS (NM_024620)	19	NM_024620	79673	Hs.458377	NM_024620	ENSG00000181894	ZNF329	-	zinc finger protein 329	protein-coding
chr10.134775837.-	chr10	134775837	134775838	-	0	NA	Intergenic	MER66B|LTR|ERV1	3201	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LOC399829	-	uncharacterized LOC399829	miscRNA
chrX.67548021.-	chrX	67548021	67548022	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105278	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr19.14021121.-	chr19	14021121	14021122	-	0	NA	"intron (NM_017721, intron 2 of 28)"	AluY|SINE|Alu	-4165	NM_017721	54862	Hs.269592	NM_017721	ENSG00000132024	CC2D1A	FREUD-1|Freud-1/Aki1|MRT3	coiled-coil and C2 domain containing 1A	protein-coding
chr17.34053877.+	chr17	34053877	34053878	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4802	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chrX.132930084.+	chrX	132930084	132930085	+	0	NA	"intron (NM_001164619, intron 1 of 6)"	AluY|SINE|Alu	189589	NM_001164617	2719	Hs.644108	NM_001164617	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
chr6.170547761.-	chr6	170547761	170547762	-	0	NA	Intergenic	L2b|LINE|L2	-23896	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr18.13095674.+	chr18	13095674	13095675	+	0	NA	"exon (NM_032142, exon 35 of 45)"	"exon (NM_032142, exon 35 of 45)"	104313	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr17.42869099.+	chr17	42869099	42869100	+	0	NA	Intergenic	AluSx|SINE|Alu	32531	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr16.81282949.+	chr16	81282949	81282950	+	0	NA	"intron (NM_017429, intron 2 of 10)"	AluY|SINE|Alu	10653	NM_017429	53630	Hs.212172	NM_017429	ENSG00000135697	BCMO1	BCDO|BCDO1|BCMO|BCO|BCO1	"beta-carotene 15,15'-monooxygenase 1"	protein-coding
chr1.10989810.+	chr1	10989810	10989811	+	0	NA	Intergenic	AluSq|SINE|Alu	52284	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
chrX.154630319.-	chrX	154630319	154630320	-	0	NA	Intergenic	AluY|SINE|Alu	17472	NR_036259	100422985		NR_036259	ENSG00000221190	MIR1184-2	-	microRNA 1184-2	miscRNA
chr2.86948263.-	chr2	86948263	86948264	-	0	NA	promoter-TSS (NM_001198954)	promoter-TSS (NM_001198954)	18	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000115561	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding
chr6.158836686.-	chr6	158836686	158836687	-	0	NA	"intron (NM_001007466, intron 2 of 12)"	AluY|SINE|Alu	-102994	NM_020245	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr6.21897083.-	chr6	21897083	21897084	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230408	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr1.65532976.+	chr1	65532976	65532977	+	0	NA	Intergenic	CpG	-8785	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr15.66914630.-	chr15	66914630	66914631	-	0	NA	Intergenic	CpG	56795	NM_207338	197021	Hs.680983	NM_207338		LCTL	KLG|KLPH	lactase-like	protein-coding
chr16.71414362.+	chr16	71414362	71414363	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21746	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr7.71239470.+	chr7	71239470	71239471	+	0	NA	Intergenic	AluSx1|SINE|Alu	-466714	NR_037477	100500836		NR_037477	ENSG00000265878	MIR3914-1	-	microRNA 3914-1	miscRNA
chr6.167607741.-	chr6	167607741	167607742	-	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-23660	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr16.868210.+	chr16	868210	868211	+	0	NA	Intergenic	AluSq|SINE|Alu	12767	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr20.62108056.+	chr20	62108056	62108057	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4063	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chrX.53808349.-	chrX	53808349	53808350	-	0	NA	Intergenic	AluYb8|SINE|Alu	94652	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr12.95866728.+	chr12	95866728	95866729	+	0	NA	Intergenic	AluSg|SINE|Alu	-1094	NM_006838	10988	Hs.444986	NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67|p67eIF2	methionyl aminopeptidase 2	protein-coding
chr1.899322.-	chr1	899322	899323	-	0	NA	"exon (NM_198317, exon 9 of 12)"	"exon (NM_198317, exon 9 of 12)"	2555	NM_001160184	84069	Hs.528691	NM_001160184	ENSG00000187583	PLEKHN1	RP11-54O7.7	"pleckstrin homology domain containing, family N member 1"	protein-coding
chr12.83116316.+	chr12	83116316	83116317	+	0	NA	"intron (NM_152588, intron 1 of 11)"	AluY|SINE|Alu	35382	NM_152588	160335	Hs.577775	NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chr19.11043331.-	chr19	11043331	11043332	-	0	NA	Intergenic	AluSg4|SINE|Alu	-3907	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr13.31023962.-	chr13	31023962	31023963	-	0	NA	Intergenic	AluSq2|SINE|Alu	-16119	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr6.64268062.+	chr6	64268062	64268063	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13858	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	"protein tyrosine phosphatase type IVA, member 1"	protein-coding
chr7.1116552.-	chr7	1116552	1116553	-	0	NA	"intron (NM_032350, intron 2 of 4)"	"intron (NM_032350, intron 2 of 4)"	9891	NM_001505	2852	Hs.20961	NM_001039966	ENSG00000164850	GPER	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR	G protein-coupled estrogen receptor 1	protein-coding
chr12.42621977.-	chr12	42621977	42621978	-	0	NA	"intron (NM_001190979, intron 2 of 4)"	SVA_F|Other|Other	-10112	NM_001190977	10138	Hs.708084	NM_001190977	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
chr6.2221759.-	chr6	2221759	2221760	-	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	-24109	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr12.112620032.-	chr12	112620032	112620033	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56683	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr10.134216489.+	chr10	134216489	134216490	+	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	5787	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr21.46737135.-	chr21	46737135	46737136	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29168	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr1.59041991.+	chr1	59041991	59041992	+	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	1175	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr11.66726129.-	chr11	66726129	66726130	-	0	NA	promoter-TSS (NM_001040716)	promoter-TSS (NM_001040716)	282	NM_000920	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr3.13408390.-	chr3	13408390	13408391	-	0	NA	"intron (NM_024923, intron 13 of 39)"	AluSp|SINE|Alu	-53419	NM_024923	23225	Hs.475525	NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210kDa	protein-coding
chr2.91777716.+	chr2	91777716	91777717	+	0	NA	Intergenic	CpG	70259	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr12.66636829.-	chr12	66636829	66636830	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53851	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr7.38431502.+	chr7	38431502	38431503	+	0	NA	"exon (NM_001635, exon 19 of 21)"	"exon (NM_001635, exon 19 of 21)"	50324	NR_040085	100506776	Hs.173034	NR_040085		LOC100506776	-	uncharacterized LOC100506776	miscRNA
chr1.109995485.-	chr1	109995485	109995486	-	0	NA	Intergenic	AluY|SINE|Alu	13615	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chrX.81762743.+	chrX	81762743	81762744	+	0	NA	Intergenic	AluY|SINE|Alu	-1000526	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr2.19560987.+	chr2	19560987	19560988	+	0	NA	Intergenic	CpG	-2615	NM_145260	130497	Hs.123933	NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related 1 (Drosophila)	protein-coding
chr20.61928799.+	chr20	61928799	61928800	+	0	NA	"intron (NM_020882, intron 2 of 35)"	(CAGCC)n|Simple_repeat|Simple_repeat	4261	NM_020882	57642	Hs.271285	NM_020882	ENSG00000101203	COL20A1	bA261N11.4	"collagen, type XX, alpha 1"	protein-coding
chr5.74743741.+	chr5	74743741	74743742	+	0	NA	"intron (NM_031361, intron 3 of 16)"	AluJo|SINE|Alu	63713	NM_005713	10087	Hs.270437	NM_001130105	ENSG00000113163	COL4A3BP	CERT|CERTL|GPBP|STARD11	"collagen, type IV, alpha 3 (Goodpasture antigen) binding protein"	protein-coding
chr19.43968428.-	chr19	43968428	43968429	-	0	NA	"intron (NM_014400, intron 2 of 4)"	CpG-13856	-1403	NM_014400	27076	Hs.631594	NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
chr9.116226013.-	chr9	116226013	116226014	-	0	NA	promoter-TSS (NM_017790)	promoter-TSS (NM_017790)	-33	NM_017790	5998	Hs.494875	NM_001276260	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
chr17.73010436.+	chr17	73010436	73010437	+	0	NA	"intron (NM_001545, intron 1 of 5)"	AluY|SINE|Alu	1656	NM_001545	3396	Hs.407955	NM_001545	ENSG00000167862	ICT1	DS-1|DS1	immature colon carcinoma transcript 1	protein-coding
chr3.122695682.-	chr3	122695682	122695683	-	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	701	NM_001256347	54437	Hs.210870	NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	"sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B"	protein-coding
chr5.178157721.-	chr5	178157721	178157722	-	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	18	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chrX.99617554.-	chrX	99617554	99617555	-	0	NA	"intron (NM_020766, intron 2 of 4)"	AluY|SINE|Alu	-47717	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr19.15037591.-	chr19	15037591	15037592	-	0	NA	Intergenic	AluSp|SINE|Alu	14710	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr19.16136951.+	chr19	16136951	16136952	+	0	NA	"non-coding (NR_026828, exon 9 of 9)"	"non-coding (NR_026828, exon 9 of 9)"	-7572	NR_024335	148231	Hs.631621	NM_152483	ENSG00000167459	FLJ25328	-	uncharacterized LOC148231	miscRNA
chr2.43847302.+	chr2	43847302	43847303	+	0	NA	Intergenic	AluY|SINE|Alu	-17137	NM_172069	130271	Hs.164162	NM_172069	ENSG00000152527	PLEKHH2	PLEKHH1L	"pleckstrin homology domain containing, family H (with MyTH4 domain) member 2"	protein-coding
chr1.169305224.+	chr1	169305224	169305225	+	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	31962	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr14.65639691.+	chr14	65639691	65639692	+	0	NA	Intergenic	AluY|SINE|Alu	-70278	NR_073137	4149	Hs.285354	NM_001271068	ENSG00000125952	MAX	bHLHd4	MYC associated factor X	protein-coding
chr17.4453844.+	chr17	4453844	4453845	+	0	NA	"intron (NM_014520, intron 8 of 25)"	"intron (NM_014520, intron 8 of 25)"	4837	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr16.22675486.-	chr16	22675486	22675487	-	0	NA	Intergenic	AluJr|SINE|Alu	54117	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr5.79942129.+	chr5	79942129	79942130	+	0	NA	"intron (NM_000791, intron 3 of 5)"	AluSg|SINE|Alu	4725	NM_001190470	100462981	Hs.666077	NM_001190470		MTRNR2L2	HN2	MT-RNR2-like 2	protein-coding
chr9.21968292.-	chr9	21968292	21968293	-	0	NA	TTS (NR_024274)	TTS (NR_024274)	-1154	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr3.183052350.-	chr3	183052350	183052351	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81318	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr17.74632755.+	chr17	74632755	74632756	+	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	7139	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr1.183670907.-	chr1	183670907	183670908	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48459	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr17.73584038.-	chr17	73584038	73584039	-	0	NA	promoter-TSS (NR_003587)	promoter-TSS (NR_003587)	101	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000188126	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
chr8.120878147.+	chr8	120878147	120878148	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7753	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr12.105389720.-	chr12	105389720	105389721	-	0	NA	Intergenic	AluY|SINE|Alu	-9622	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chrX.153098599.-	chrX	153098599	153098600	-	0	NA	Intergenic	AluJr|SINE|Alu	2596	NM_032512	57595	Hs.92732	NM_032512	ENSG00000067840	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
chr11.100596524.+	chr11	100596524	100596525	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38117	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr4.106031843.+	chr4	106031843	106031844	+	0	NA	Intergenic	SVA_E|Other|Other	-35189	NM_017628	54790	Hs.706276	NM_001127208	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
chr7.158671004.-	chr7	158671004	158671005	-	0	NA	"intron (NM_018051, intron 4 of 24)"	"intron (NM_018051, intron 4 of 24)"	-21735	NM_018051	55112	Hs.389945	NM_018051	ENSG00000126870	WDR60	-	WD repeat domain 60	protein-coding
chrX.53123448.+	chrX	53123448	53123449	+	0	NA	Intergenic	CpG	11906	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.1474636.-	chr7	1474636	1474637	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24473	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr2.85638999.-	chr2	85638999	85639000	-	0	NA	"intron (NM_001256139, intron 1 of 9)"	AluSx1|SINE|Alu	1179	NM_001747	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr19.50614547.-	chr19	50614547	50614548	-	0	NA	Intergenic	AluSx1|SINE|Alu	-1198	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
chr6.46742377.-	chr6	46742377	46742378	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18717	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr2.70416567.-	chr2	70416567	70416568	-	0	NA	"intron (NM_017880, intron 1 of 9)"	"intron (NM_017880, intron 1 of 9)"	-1584	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr7.130418505.-	chr7	130418505	130418506	-	0	NA	"exon (NM_138693, exon 1 of 1)"	"exon (NM_138693, exon 1 of 1)"	-383	NM_138693	136259	Hs.125240	NM_138693	ENSG00000174595	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
chr7.5557974.+	chr7	5557974	5557975	+	0	NA	Intergenic	AluYc|SINE|Alu	-4575	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr6.170547779.-	chr6	170547779	170547780	-	0	NA	Intergenic	L2b|LINE|L2	-23878	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chrY.13487296.+	chrY	13487296	13487297	+	0	NA	Intergenic	Intergenic	1046093	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr11.41260614.-	chr11	41260614	41260615	-	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	-220572	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr11.62418870.+	chr11	62418870	62418871	+	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	1904	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr15.89721834.+	chr15	89721834	89721835	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43088	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr16.181432.+	chr16	181432	181433	+	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	7265	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr8.3825580.-	chr8	3825580	3825581	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026748	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr16.70207326.+	chr16	70207326	70207327	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-602	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr9.29188727.-	chr9	29188727	29188728	-	0	NA	"intron (NM_001258282, intron 1 of 6)"	SVA_D|Other|Other	-24271	NM_001258282	158038	Hs.662661	NM_001258282	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
chr1.183257614.-	chr1	183257614	183257615	-	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	-16395	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr17.41476495.-	chr17	41476495	41476496	-	0	NA	"intron (NM_001661, intron 1 of 1)"	CpG	-142	NM_001661	379	Hs.709866	NM_001661	ENSG00000175906	ARL4D	ARF4L|ARL6	ADP-ribosylation factor-like 4D	protein-coding
chr17.73585636.+	chr17	73585636	73585637	+	0	NA	"non-coding (NR_003587, exon 1 of 61)"	"non-coding (NR_003587, exon 1 of 61)"	1497	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000188126	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
chr3.124468925.+	chr3	124468925	124468926	+	0	NA	TTS (NM_000373)	TTS (NM_000373)	19712	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr6.126111936.-	chr6	126111936	126111937	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-27	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr18.32074335.-	chr18	32074335	32074336	-	0	NA	"intron (NM_001392, intron 1 of 12)"	GC_rich|Low_complexity|Low_complexity	-1081	NM_032975	1837	Hs.643454	NM_001128175	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	"dystrobrevin, alpha"	protein-coding
chr9.10974621.-	chr9	10974621	10974622	-	0	NA	Intergenic	L1PBa|LINE|L1	361898	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr2.71357862.+	chr2	71357862	71357863	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	418	NM_005791	10199	Hs.656208	NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding
chr1.54775793.+	chr1	54775793	54775794	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96186	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chrM.2645.-	chrM	2645	2646	-	0	NA	NA	LSU-rRNA_Hsa|rRNA|rRNA	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.6394560.-	chr16	6394560	6394561	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluY|SINE|Alu	-325428	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr19.2492322.+	chr19	2492322	2492323	+	0	NA	Intergenic	AluSz|SINE|Alu	16199	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr3.95669578.+	chr3	95669578	95669579	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-267541	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr10.31250703.+	chr10	31250703	31250704	+	0	NA	"intron (NR_026560, intron 1 of 6)"	AluSz|SINE|Alu	37743	NM_001143769	220929	Hs.660642	NM_001143766	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
chr17.79611147.-	chr17	79611147	79611148	-	0	NA	"intron (NM_031945, intron 1 of 2)"	AluSx|SINE|Alu	-1798	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr15.76627298.-	chr15	76627298	76627299	-	0	NA	Intergenic	AluSg|SINE|Alu	1849	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr4.48016928.+	chr4	48016928	48016929	+	0	NA	Intergenic	AluY|SINE|Alu	-1863	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr17.1226064.-	chr17	1226064	1226065	-	0	NA	Intergenic	Intergenic	-43107	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr1.21892981.+	chr1	21892981	21892982	+	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	57123	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr12.112407374.-	chr12	112407374	112407375	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSx3|SINE|Alu	-43649	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr14.102109474.+	chr14	102109474	102109475	+	0	NA	Intergenic	AluY|SINE|Alu	81786	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chrX.9366114.+	chrX	9366114	9366115	+	0	NA	Intergenic	AluY|SINE|Alu	-65221	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr20.33283587.-	chr20	33283587	33283588	-	0	NA	Intergenic	AluY|SINE|Alu	8561	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr14.65639989.+	chr14	65639989	65639990	+	0	NA	Intergenic	AluY|SINE|Alu	-70576	NR_073137	4149	Hs.285354	NM_001271068	ENSG00000125952	MAX	bHLHd4	MYC associated factor X	protein-coding
chr2.113642162.-	chr2	113642162	113642163	-	0	NA	Intergenic	AluJb|SINE|Alu	28386	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr2.70972149.-	chr2	70972149	70972150	-	0	NA	"intron (NM_017482, intron 1 of 12)"	AluY|SINE|Alu	-22698	NM_001185054	119	Hs.188528	NM_001185054	ENSG00000075340	ADD2	ADDB	adducin 2 (beta)	protein-coding
chr15.41795304.+	chr15	41795304	41795305	+	0	NA	TTS (NM_002344)	TTS (NM_002344)	9248	NM_002220	3706	Hs.2722	NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
chr20.56232632.+	chr20	56232632	56232633	+	0	NA	"intron (NM_199171, intron 2 of 3)"	"intron (NM_199171, intron 2 of 3)"	33048	NM_001255976	56937	Hs.517155	NM_001255976	ENSG00000124225	PMEPA1	STAG1|TMEPAI	"prostate transmembrane protein, androgen induced 1"	protein-coding
chr1.57087959.+	chr1	57087959	57087960	+	0	NA	Intergenic	AluSz|SINE|Alu	-23031	NM_006252	5563	Hs.437039	NM_006252	ENSG00000162409	PRKAA2	AMPK|AMPK2|AMPKa2|PRKAA	"protein kinase, AMP-activated, alpha 2 catalytic subunit"	protein-coding
chr7.62940011.-	chr7	62940011	62940012	-	0	NA	Intergenic	AluYf4|SINE|Alu	80592	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr2.242530100.+	chr2	242530100	242530101	+	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	26816	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr7.5582586.-	chr7	5582586	5582587	-	0	NA	Intergenic	Intergenic	12354	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chrX.68956148.-	chrX	68956148	68956149	-	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSp|SINE|Alu	-120237	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chrX.133565042.-	chrX	133565042	133565043	-	0	NA	Intergenic	AluSp|SINE|Alu	29133	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr13.112769100.+	chr13	112769100	112769101	+	0	NA	Intergenic	L2a|LINE|L2	47187	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr20.62468161.+	chr20	62468161	62468162	+	0	NA	Intergenic	Intergenic	-24405	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr1.2587429.-	chr1	2587429	2587430	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	22948	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr5.139283508.-	chr5	139283508	139283509	-	0	NA	"intron (NM_001184935, intron 1 of 7)"	CpG	-108102	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
chr7.156795110.+	chr7	156795110	156795111	+	0	NA	Intergenic	Intergenic	7019	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr14.101371247.+	chr14	101371247	101371248	+	0	NA	"intron (NR_024149, intron 2 of 3)"	"intron (NR_024149, intron 2 of 3)"	10140	NR_024149	79104	Hs.655789	NR_024149	ENSG00000258399	MEG8	Bsr|Irm|LINC00024|NCRNA00024|Rian	maternally expressed 8 (non-protein coding)	miscRNA
chr3.52918384.+	chr3	52918384	52918385	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13213	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr12.133366785.-	chr12	133366785	133366786	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28334	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr22.49969167.-	chr22	49969167	49969168	-	0	NA	Intergenic	Intergenic	-82023	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chrX.11749463.-	chrX	11749463	11749464	-	0	NA	Intergenic	AluSx|SINE|Alu	26815	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr7.1889557.+	chr7	1889557	1889558	+	0	NA	"intron (NM_001013836, intron 18 of 18)"	"intron (NM_001013836, intron 18 of 18)"	-5668	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	miscRNA
chr2.192374876.+	chr2	192374876	192374877	+	0	NA	Intergenic	AluY|SINE|Alu	-167922	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chrX.53125754.+	chrX	53125754	53125755	+	0	NA	Intergenic	AluJb|SINE|Alu	14212	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.18794736.-	chr19	18794736	18794737	-	0	NA	"intron (NM_015321, intron 1 of 13)"	CpG	-311	NM_001098482	23373	Hs.371096	NM_025021	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
chr11.47371439.-	chr11	47371439	47371440	-	0	NA	"exon (NM_000256, exon 5 of 34)"	"exon (NM_000256, exon 5 of 34)"	-2814	NM_000256	4607	Hs.524906	NM_000256	ENSG00000134571	MYBPC3	CMH4|FHC|MYBP-C	"myosin binding protein C, cardiac"	protein-coding
chr1.31248106.+	chr1	31248106	31248107	+	0	NA	Intergenic	Intergenic	-17423	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
chr11.31560824.-	chr11	31560824	31560825	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29527	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chrX.47721688.-	chrX	47721688	47721689	-	0	NA	"intron (NM_007137, intron 2 of 4)"	AluSq2|SINE|Alu	-25387	NM_007137	347344	Hs.114246	NM_007137	ENSG00000197779	ZNF81	HFZ20|MRX45|dJ54B20.6	zinc finger protein 81	protein-coding
chr1.220909469.+	chr1	220909469	220909470	+	0	NA	Intergenic	AluSc|SINE|Alu	-12207	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr11.44361811.+	chr11	44361811	44361812	+	0	NA	Intergenic	AluJb|SINE|Alu	-30095	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr6.114067432.-	chr6	114067432	114067433	-	0	NA	Intergenic	AluY|SINE|Alu	111095	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr21.43699102.-	chr21	43699102	43699103	-	0	NA	"intron (NM_016818, intron 5 of 14)"	"intron (NM_016818, intron 5 of 14)"	-36604	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
chr11.1476582.+	chr11	1476582	1476583	+	0	NA	"intron (NM_003957, intron 16 of 19)"	"intron (NM_003957, intron 16 of 19)"	31366	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr18.21294384.+	chr18	21294384	21294385	+	0	NA	"intron (NM_198129, intron 2 of 74)"	AluSx1|SINE|Alu	24822	NM_001127717	3909	Hs.436367	NM_000227	ENSG00000053747	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	"laminin, alpha 3"	protein-coding
chr2.183903188.+	chr2	183903188	183903189	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	41	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr15.63229243.-	chr15	63229243	63229244	-	0	NA	Intergenic	AluSp|SINE|Alu	105595	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr8.27695272.+	chr8	27695272	27695273	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	77	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr3.193855752.+	chr3	193855752	193855753	+	0	NA	"exon (NM_005524, exon 4 of 4)"	"exon (NM_005524, exon 4 of 4)"	1821	NM_005524	3280	Hs.250666	NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	"hairy and enhancer of split 1, (Drosophila)"	protein-coding
chr2.132978685.+	chr2	132978685	132978686	+	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	35968	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr21.11107123.-	chr21	11107123	11107124	-	0	NA	Intergenic	CpG	8186	NM_001187	574	Hs.624543	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
chr22.24237299.-	chr22	24237299	24237300	-	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	-734	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr2.236999584.-	chr2	236999584	236999585	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-77068	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr1.21892971.-	chr1	21892971	21892972	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57113	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr14.35080542.+	chr14	35080542	35080543	+	0	NA	"intron (NM_021249, intron 1 of 12)"	AluSz6|SINE|Alu	18773	NM_021249	58533	Hs.356647	NM_152233	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
chr12.75694243.-	chr12	75694243	75694244	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29593	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr11.129863579.+	chr11	129863579	129863580	+	0	NA	"intron (NM_020228, intron 1 of 21)"	AluY|SINE|Alu	-8940	NR_024233	440072	Hs.630600	NM_001007543		LINC00167	C11orf37|NCRNA00167	long intergenic non-protein coding RNA 167	miscRNA
chr2.58077715.+	chr2	58077715	58077716	+	0	NA	Intergenic	Intergenic	-196062	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chrX.132399698.+	chrX	132399698	132399699	+	0	NA	Intergenic	Intergenic	-47322	NM_016521	51270	Hs.142908	NM_016521	ENSG00000183434	TFDP3	CT30|DP4|HCA661	"transcription factor Dp family, member 3"	protein-coding
chr16.56691672.+	chr16	56691672	56691673	+	0	NA	promoter-TSS (NM_005949)	promoter-TSS (NM_005949)	-183	NM_005949	4494	Hs.513626	NM_005949	ENSG00000198417	MT1F	MT1	metallothionein 1F	protein-coding
chr8.61193853.+	chr8	61193853	61193854	+	0	NA	"5' UTR (NM_004056, exon 1 of 9)"	"5' UTR (NM_004056, exon 1 of 9)"	101	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
chr3.82554739.-	chr3	82554739	82554740	-	0	NA	Intergenic	MER52A|LTR|ERV1	743789	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr9.100962712.+	chr9	100962712	100962713	+	0	NA	"intron (NR_051978, intron 10 of 11)"	"intron (NR_051978, intron 10 of 11)"	-7756	NM_052820	7464	Hs.113094	NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	"coronin, actin binding protein, 2A"	protein-coding
chr19.50670078.-	chr19	50670078	50670079	-	0	NA	Intergenic	AluSg|SINE|Alu	3540	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr16.70207301.+	chr16	70207301	70207302	+	0	NA	promoter-TSS (NM_173619)	promoter-TSS (NM_173619)	-627	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chr10.135192249.+	chr10	135192249	135192250	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-492	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr16.30810974.-	chr16	30810974	30810975	-	0	NA	Intergenic	AluSx|SINE|Alu	12451	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chrM.808.+	chrM	808	809	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.3022440.+	chr1	3022440	3022441	+	0	NA	"intron (NM_199454, intron 1 of 16)"	"intron (NM_199454, intron 1 of 16)"	-22099	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr8.141559348.-	chr8	141559348	141559349	-	0	NA	"exon (NM_012154, exon 12 of 19)"	"exon (NM_012154, exon 12 of 19)"	-37267	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr2.99438485.+	chr2	99438485	99438486	+	0	NA	"exon (NM_207362, exon 7 of 10)"	"exon (NM_207362, exon 7 of 10)"	-90896	NM_012214	11320	Hs.177576	NM_001160154	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	"mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A"	protein-coding
chrX.21676550.-	chrX	21676550	21676551	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	102	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr17.8061108.-	chr17	8061108	8061109	-	0	NA	Intergenic	AluSx|SINE|Alu	-5185	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr8.3501055.+	chr8	3501055	3501056	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351273	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr9.80898948.+	chr9	80898948	80898949	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13111	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr20.61885498.-	chr20	61885498	61885499	-	0	NA	"non-coding (NR_024389, exon 1 of 1)"	"non-coding (NR_024389, exon 1 of 1)"	-168	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	miscRNA
chr12.129892266.-	chr12	129892266	129892267	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-495946	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr19.9311220.-	chr19	9311220	9311221	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14327	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr6.108315283.+	chr6	108315283	108315284	+	0	NA	Intergenic	AluSz|SINE|Alu	-35801	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr19.11591781.-	chr19	11591781	11591782	-	0	NA	promoter-TSS (NM_001420)	promoter-TSS (NM_001420)	-22	NM_032281	1995	Hs.1701	NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	"ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)"	protein-coding
chr13.29293203.+	chr13	29293203	29293204	+	0	NA	promoter-TSS (NM_181785)	promoter-TSS (NM_181785)	-53	NM_181785	283537	Hs.117167	NM_001135919	ENSG00000139508	SLC46A3	FKSG16	"solute carrier family 46, member 3"	protein-coding
chr10.28821782.-	chr10	28821782	28821783	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-360	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr6.94126625.-	chr6	94126625	94126626	-	0	NA	"intron (NM_004440, intron 1 of 16)"	CpG	-2675	NM_004440	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK3|HEK11	EPH receptor A7	protein-coding
chr4.166248548.-	chr4	166248548	166248549	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	270	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chrX.106914029.+	chrX	106914029	106914030	+	0	NA	Intergenic	AluSz|SINE|Alu	42375	NM_002764	5631	Hs.56	NM_001204402	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
chr2.175209003.+	chr2	175209003	175209004	+	0	NA	Intergenic	CpG	9182	NM_001145250	100131390	Hs.516603	NM_001145250		SP9	ZNF990	Sp9 transcription factor	protein-coding
chr8.86544471.-	chr8	86544471	86544472	-	0	NA	Intergenic	AluSp|SINE|Alu	-23434	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr16.84879497.+	chr16	84879497	84879498	+	0	NA	"exon (NM_031476, exon 3 of 15)"	"exon (NM_031476, exon 3 of 15)"	25910	NM_031476	83716	Hs.617091	NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
chr4.38190468.-	chr4	38190468	38190469	-	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-68893	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr2.71562035.+	chr2	71562035	71562036	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3150	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr17.4708732.-	chr17	4708732	4708733	-	0	NA	Intergenic	Intergenic	1664	NM_001243108	5338	Hs.104519	NM_001243108	ENSG00000129219	PLD2	-	phospholipase D2	protein-coding
chr7.1474499.+	chr7	1474499	1474500	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24610	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr6.71104374.+	chr6	71104374	71104375	+	0	NA	Intergenic	MER48|LTR|ERV1	-18733	NM_020819	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr10.48428835.+	chr10	48428835	48428836	+	0	NA	"exon (NM_004962, exon 2 of 3)"	"exon (NM_004962, exon 2 of 3)"	10303	NM_004962	2662	Hs.2171	NM_004962	ENSG00000107623	GDF10	BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
chr1.16378014.+	chr1	16378014	16378015	+	0	NA	"exon (NM_000085, exon 13 of 20)"	"exon (NM_000085, exon 13 of 20)"	2757	NM_001165945	1188	Hs.352243	XM_003960900	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	"chloride channel, voltage-sensitive Kb"	protein-coding
chr2.9934278.-	chr2	9934278	9934279	-	0	NA	Intergenic	Intergenic	49293	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr1.151742040.+	chr1	151742040	151742041	+	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	2909	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr13.19728215.+	chr13	19728215	19728216	+	0	NA	Intergenic	Intergenic	11093	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr19.38836161.-	chr19	38836161	38836162	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9718	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr17.37009806.-	chr17	37009806	37009807	-	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	-247	NM_000978	9349	Hs.406300	NM_000978		RPL23	L23|rpL17	ribosomal protein L23	protein-coding
chr18.77493550.-	chr18	77493550	77493551	-	0	NA	"intron (NM_001202504, intron 11 of 12)"	CpG	-52120	NM_001202504	9150	Hs.734021	NM_001202504	ENSG00000060069	CTDP1	CCFDN|FCP1	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1"	protein-coding
chr13.88877266.-	chr13	88877266	88877267	-	0	NA	Intergenic	AluY|SINE|Alu	315818	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr7.129420363.-	chr7	129420363	129420364	-	0	NA	Intergenic	CpG	5509	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	miscRNA
chrY.9930634.-	chrY	9930634	9930635	-	0	NA	Intergenic	CpG	-182227	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr10.59351278.+	chr10	59351278	59351279	+	0	NA	Intergenic	AluY|SINE|Alu	-286959	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr8.23131067.+	chr8	23131067	23131068	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14545	NM_001136108	203069	Hs.458644	NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
chr21.47838757.-	chr21	47838757	47838758	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40105	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr21.47403304.+	chr21	47403304	47403305	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1641	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr8.58122884.+	chr8	58122884	58122885	+	0	NA	Intergenic	MER50|LTR|ERV1	-8764	NR_038235	100507651	Hs.631151	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	miscRNA
chr4.8912400.+	chr4	8912400	8912401	+	0	NA	Intergenic	Intergenic	-38857	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr1.40260005.+	chr1	40260005	40260006	+	0	NA	Intergenic	AluY|SINE|Alu	-5472	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
chr5.87926487.-	chr5	87926487	87926488	-	0	NA	"intron (NR_015436, intron 3 of 4)"	AluSx1|SINE|Alu	-36270	NR_030741	407047		NR_030741	ENSG00000207570	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2	microRNA 9-2	miscRNA
chr13.103088642.-	chr13	103088642	103088643	-	0	NA	Intergenic	AluY|SINE|Alu	34518	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
chr10.80723732.-	chr10	80723732	80723733	-	0	NA	"intron (NR_015429, intron 3 of 7)"	"intron (NR_015429, intron 3 of 7)"	-103473	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	miscRNA
chr3.170096473.-	chr3	170096473	170096474	-	0	NA	"intron (NM_001145097, intron 1 of 5)"	AluSx1|SINE|Alu	-19062	NM_001248008	6498	Hs.581632	NM_001145097	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like oncogene	protein-coding
chr21.45243640.+	chr21	45243640	45243641	+	0	NA	Intergenic	Intergenic	-11192	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr10.128174233.-	chr10	128174233	128174234	-	0	NA	"intron (NM_001004298, intron 3 of 8)"	AluY|SINE|Alu	-35777	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
chr21.47403576.-	chr21	47403576	47403577	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1913	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr10.26604614.-	chr10	26604614	26604615	-	0	NA	Intergenic	AluSx1|SINE|Alu	-99378	NM_001134366	2572	Hs.231829	NM_000818	ENSG00000136750	GAD2	GAD65	"glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)"	protein-coding
chr2.240371809.-	chr2	240371809	240371810	-	0	NA	Intergenic	SVA_D|Other|Other	49166	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr15.29862592.-	chr15	29862592	29862593	-	0	NA	"intron (NM_015307, intron 1 of 10)"	CpG	-335	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	"family with sequence similarity 189, member A1"	protein-coding
chr6.33806261.+	chr6	33806261	33806262	+	0	NA	Intergenic	Intergenic	-34468	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr19.5409958.+	chr19	5409958	5409959	+	0	NA	Intergenic	AluY|SINE|Alu	-45468	NM_181710	148066	Hs.126496	NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
chr11.100596525.-	chr11	100596525	100596526	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38118	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr14.105736149.+	chr14	105736149	105736150	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20408	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr16.30960875.+	chr16	30960875	30960876	+	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	470	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr11.61659207.+	chr11	61659207	61659208	+	0	NA	promoter-TSS (NM_021727)	promoter-TSS (NM_021727)	-201	NM_021727	3995	Hs.21765	NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
chr1.173533920.+	chr1	173533920	173533921	+	0	NA	"intron (NM_178527, intron 9 of 27)"	AluY|SINE|Alu	38313	NM_178527	284525	Hs.494981	NM_178527	ENSG00000162753	SLC9C2	RP3-436N22.2|SLC9A11	"solute carrier family 9, member C2 (putative)"	protein-coding
chr3.128161145.-	chr3	128161145	128161146	-	0	NA	Intergenic	Intergenic	21292	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr10.133016255.-	chr10	133016255	133016256	-	0	NA	"intron (NM_174937, intron 4 of 11)"	AluY|SINE|Alu	-93729	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr3.52918381.+	chr3	52918381	52918382	+	0	NA	"intron (NM_198563, intron 1 of 8)"	AluSx1|SINE|Alu	13216	NM_001198974	100526772	Hs.744189	NM_001198974	ENSG00000248592	TMEM110-MUSTN1	-	TMEM110-MUSTN1 readthrough	protein-coding
chr19.5622767.-	chr19	5622767	5622768	-	0	NA	promoter-TSS (NM_001201339)	promoter-TSS (NM_001201339)	-171	NM_014649	9667	Hs.655392	NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
chr11.62438105.-	chr11	62438105	62438106	-	0	NA	"intron (NM_024099, intron 1 of 6)"	AluY|SINE|Alu	1021	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chr7.2545008.-	chr7	2545008	2545009	-	0	NA	Intergenic	Intergenic	7155	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr16.1919649.-	chr16	1919649	1919650	-	0	NA	"intron (NM_152764, intron 1 of 12)"	AluY|SINE|Alu	-2453	NM_152764	254528	Hs.729604	NM_001163560	ENSG00000162039	MEIOB	C16orf73|gs129	meiosis specific with OB domains	protein-coding
chr16.723803.-	chr16	723803	723804	-	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	2272	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr2.120775605.-	chr2	120775605	120775606	-	0	NA	"intron (NM_001184938, intron 1 of 16)"	AluY|SINE|Alu	-4820	NM_001184938	57669	Hs.369232	NM_001184937	ENSG00000115109	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
chr7.45750440.+	chr7	45750440	45750441	+	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	58177	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr14.76577618.-	chr14	76577618	76577619	-	0	NA	Intergenic	AluSx1|SINE|Alu	40641	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr5.176091483.+	chr5	176091483	176091484	+	0	NA	Intergenic	Intergenic	17095	NM_012171	26262	Hs.532129	NM_001006616	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
chrX.53123318.-	chrX	53123318	53123319	-	0	NA	Intergenic	CpG	-11776	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr5.27408044.+	chr5	27408044	27408045	+	0	NA	Intergenic	AluY|SINE|Alu	-64355	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LOC643401	-	uncharacterized LOC643401	miscRNA
chr11.68303151.-	chr11	68303151	68303152	-	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	-74965	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr9.110252659.+	chr9	110252659	110252660	+	0	NA	promoter-TSS (NM_004235)	promoter-TSS (NM_004235)	-612	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
chr9.34329766.-	chr9	34329766	34329767	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-262	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr11.115751920.+	chr11	115751920	115751921	+	0	NA	Intergenic	L1PA4|LINE|L1	-121002	NR_034148	283143	Hs.130499	NR_034148		LOC283143	-	uncharacterized LOC283143	miscRNA
chr6.170055331.-	chr6	170055331	170055332	-	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	-46828	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr6.164024127.-	chr6	164024127	164024128	-	0	NA	Intergenic	Intergenic	-188452	NM_006775	9444	Hs.510324	NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	"QKI, KH domain containing, RNA binding"	protein-coding
chr7.55849647.-	chr7	55849647	55849648	-	0	NA	Intergenic	AluY|SINE|Alu	77387	NR_003949	360132	Hs.446691	NM_182827	ENSG00000176826	FKBP9L	-	FK506 binding protein 9-like	pseudo
chr9.133788050.+	chr9	133788050	133788051	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18825	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr5.37295979.-	chr5	37295979	37295980	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46449	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr16.30170465.-	chr16	30170465	30170466	-	0	NA	Intergenic	SVA_A|Other|Other	24266	NM_001193333	11151	Hs.415067	NM_001193333	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|TACO|p57	"coronin, actin binding protein, 1A"	protein-coding
chr19.49186308.-	chr19	49186308	49186309	-	0	NA	TTS (NR_004401)	TTS (NR_004401)	10044	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr6.163752510.-	chr6	163752510	163752511	-	0	NA	Intergenic	Intergenic	7005	NR_028390	285796	Hs.668693	NR_028390		PACRG-AS1	-	PACRG antisense RNA 1	miscRNA
chr22.31033044.-	chr22	31033044	31033045	-	0	NA	"exon (NM_001001479, exon 1 of 2)"	"exon (NM_001001479, exon 1 of 2)"	-1251	NM_001001479	339665	Hs.660384	NM_001001479	ENSG00000100036	SLC35E4	-	"solute carrier family 35, member E4"	protein-coding
chr16.71414359.+	chr16	71414359	71414360	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21743	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr2.232123082.+	chr2	232123082	232123083	+	0	NA	"intron (NM_025139, intron 10 of 20)"	AluSx|SINE|Alu	59788	NM_001271466	80210	Hs.471610	NM_001271466	ENSG00000135931	ARMC9	ARM|KU-MEL-1	armadillo repeat containing 9	protein-coding
chr9.133788113.+	chr9	133788113	133788114	+	0	NA	"intron (NM_032843, intron 4 of 6)"	"intron (NM_032843, intron 4 of 6)"	-18888	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr16.71414361.+	chr16	71414361	71414362	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21745	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr5.3188285.-	chr5	3188285	3188286	-	0	NA	Intergenic	CpG	-347923	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr7.66137171.-	chr7	66137171	66137172	-	0	NA	Intergenic	AluY|SINE|Alu	-43303	NM_001167961	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr3.82554678.+	chr3	82554678	82554679	+	0	NA	Intergenic	MER52A|LTR|ERV1	-743728	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr2.71559411.-	chr2	71559411	71559412	-	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	-526	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr15.41539524.+	chr15	41539524	41539525	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16087	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr8.38894856.+	chr8	38894856	38894857	+	0	NA	"intron (NR_027638, intron 11 of 20)"	AluYc3|SINE|Alu	40351	NM_003816	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
chr1.95064904.+	chr1	95064904	95064905	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-57491	NM_001993	2152	Hs.62192	NM_001178096	ENSG00000117525	F3	CD142|TF|TFA	"coagulation factor III (thromboplastin, tissue factor)"	protein-coding
chr4.177146999.-	chr4	177146999	177147000	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30177	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr12.132116818.+	chr12	132116818	132116819	+	0	NA	Intergenic	L1ME1|LINE|L1	-78814	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chrX.129091205.-	chrX	129091205	129091206	-	0	NA	Intergenic	CpG	47959	NM_021946	63035	Hs.496748	NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
chr2.9934268.-	chr2	9934268	9934269	-	0	NA	Intergenic	Intergenic	49303	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	"TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa"	protein-coding
chr16.89117873.+	chr16	89117873	89117874	+	0	NA	Intergenic	Intergenic	-42344	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr17.77162399.+	chr17	77162399	77162400	+	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	91380	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr17.12756047.+	chr17	12756047	12756048	+	0	NA	"intron (NM_014859, intron 1 of 20)"	AluY|SINE|Alu	63218	NM_014859	9912	Hs.499758	NM_014859	ENSG00000006740	ARHGAP44	NPC-A-10|RICH2	Rho GTPase activating protein 44	protein-coding
chr8.55985693.-	chr8	55985693	55985694	-	0	NA	Intergenic	AluSz|SINE|Alu	29324	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chrX.9433570.-	chrX	9433570	9433571	-	0	NA	"intron (NM_005647, intron 1 of 17)"	CpG	-369	NM_005647	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr14.51521348.-	chr14	51521348	51521349	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41074	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr17.810100.-	chr17	810100	810101	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42749	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr19.42796801.-	chr19	42796801	42796802	-	0	NA	"exon (NM_015125, exon 14 of 20)"	"exon (NM_015125, exon 14 of 20)"	-7984	NM_015125	23152	Hs.388236	NM_015125	ENSG00000079432	CIC	-	capicua transcriptional repressor	protein-coding
chr4.26862267.-	chr4	26862267	26862268	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	46	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr11.130241829.-	chr11	130241829	130241830	-	0	NA	Intergenic	AluSc8|SINE|Alu	-56710	NM_007037	11095	Hs.271605	NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	"ADAM metallopeptidase with thrombospondin type 1 motif, 8"	protein-coding
chr10.94122276.+	chr10	94122276	94122277	+	0	NA	Intergenic	AluSg|SINE|Alu	-56142	NR_038243	100507674	Hs.742186	NR_038243		MARK2P9	-	MAP/microtubule affinity-regulating kinase 2 pseudogene 9	pseudo
chr9.86571475.-	chr9	86571475	86571476	-	0	NA	"5' UTR (NM_032307, exon 1 of 4)"	"5' UTR (NM_032307, exon 1 of 4)"	-188	NM_032307	84267	Hs.208914	NM_032307	ENSG00000165118	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
chr11.63976978.-	chr11	63976978	63976979	-	0	NA	"intron (NM_178443, intron 2 of 14)"	"intron (NM_178443, intron 2 of 14)"	-2826	NM_031471	83706	Hs.180535	NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	fermitin family member 3	protein-coding
chr19.839008.+	chr19	839008	839009	+	0	NA	Intergenic	L1MC4|LINE|L1	-1977	NM_002777	5657	Hs.928	NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
chr1.183670805.+	chr1	183670805	183670806	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48357	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr5.87348559.+	chr5	87348559	87348560	+	0	NA	Intergenic	L1PA2|LINE|L1	216106	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr15.63892661.-	chr15	63892661	63892662	-	0	NA	"intron (NM_203373, intron 1 of 1)"	"intron (NM_203373, intron 1 of 1)"	-365	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	LOC100130855	-	uncharacterized LOC100130855	miscRNA
chr8.30590280.+	chr8	30590280	30590281	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4794	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr6.168352159.+	chr6	168352159	168352160	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25460	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr17.7198730.+	chr17	7198730	7198731	+	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	-854	NM_015982	51087	Hs.567494	NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y box binding protein 2	protein-coding
chr6.33811482.-	chr6	33811482	33811483	-	0	NA	Intergenic	LTR33|LTR|ERVL	39689	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr13.88877253.+	chr13	88877253	88877254	+	0	NA	Intergenic	AluY|SINE|Alu	-315831	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr16.8974158.+	chr16	8974158	8974159	+	0	NA	Intergenic	Intergenic	-11295	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr4.5981890.+	chr4	5981890	5981891	+	0	NA	Intergenic	Intergenic	-56835	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	-	microRNA 378d-1	miscRNA
chr7.36403833.-	chr7	36403833	36403834	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2949	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr2.91671076.+	chr2	91671076	91671077	+	0	NA	Intergenic	CpG	176899	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr3.98624730.+	chr3	98624730	98624731	+	0	NA	Intergenic	AluY|SINE|Alu	-4197	NM_080927	131566	Hs.203691	NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	"discoidin, CUB and LCCL domain containing 2"	protein-coding
chr6.137811300.+	chr6	137811300	137811301	+	0	NA	Intergenic	Intergenic	4231	NM_175747	167826	Hs.195398	NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
chr8.27509112.-	chr8	27509112	27509113	-	0	NA	"exon (NM_182826, exon 3 of 6)"	"exon (NM_182826, exon 3 of 6)"	-17535	NM_016240	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	"scavenger receptor class A, member 3"	protein-coding
chr1.6132104.-	chr1	6132104	6132105	-	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	-25930	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr6.139942278.+	chr6	139942278	139942279	+	0	NA	Intergenic	AluY|SINE|Alu	-146545	NR_033919	645434	Hs.666240	NR_033919		LOC645434	-	uncharacterized LOC645434	miscRNA
chr2.237068269.-	chr2	237068269	237068270	-	0	NA	Intergenic	CpG	-8383	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr9.425361.+	chr9	425361	425362	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44933	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr10.122148825.+	chr10	122148825	122148826	+	0	NA	Intergenic	AluSx1|SINE|Alu	-67641	NM_001030059	196051	Hs.40479	NM_001030059	ENSG00000203805	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
chr17.42869166.+	chr17	42869166	42869167	+	0	NA	Intergenic	AluY|SINE|Alu	32598	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr22.22550475.-	chr22	22550475	22550476	-	0	NA	Intergenic	Intergenic	48725	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr14.74079039.-	chr14	74079039	74079040	-	0	NA	Intergenic	AluSq2|SINE|Alu	4509	NM_001037162	641372	Hs.122038	NM_001037162	ENSG00000205669	ACOT6	C14orf42|c14_5530	acyl-CoA thioesterase 6	protein-coding
chr1.227894028.+	chr1	227894028	227894029	+	0	NA	Intergenic	AluY|SINE|Alu	-8620	NR_036753	401983	Hs.681816	NR_036753		ZNF847P	gm127	"zinc finger protein 847, pseudogene"	pseudo
chr10.135075436.-	chr10	135075436	135075437	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14312	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr22.38531088.+	chr22	38531088	38531089	+	0	NA	"exon (NM_001199562, exon 6 of 16)"	"exon (NM_001199562, exon 6 of 16)"	-24412	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr22.41521428.-	chr22	41521428	41521429	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32814	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chrX.144902980.+	chrX	144902980	144902981	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	114	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr12.26964578.+	chr12	26964578	26964579	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21553	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr16.544873.-	chr16	544873	544874	-	0	NA	"intron (NM_001142272, intron 3 of 11)"	"intron (NM_001142272, intron 3 of 11)"	-20023	NM_001142272	9727	Hs.531642	NM_001142272	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
chr6.21897076.+	chr6	21897076	21897077	+	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	230401	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr1.40330215.+	chr1	40330215	40330216	+	0	NA	"intron (NM_017646, intron 1 of 10)"	AluY|SINE|Alu	18962	NM_017646	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
chr17.2311355.+	chr17	2311355	2311356	+	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	-7097	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr19.48814056.+	chr19	48814056	48814057	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9276	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr2.237068274.-	chr2	237068274	237068275	-	0	NA	Intergenic	CpG	-8378	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chrX.150989925.+	chrX	150989925	150989926	+	0	NA	Intergenic	Intergenic	86707	NM_005140	1260	Hs.447360	NM_005140	ENSG00000183862	CNGA2	CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa	cyclic nucleotide gated channel alpha 2	protein-coding
chr1.205072069.+	chr1	205072069	205072070	+	0	NA	"intron (NM_001193273, intron 5 of 13)"	AluSp|SINE|Alu	-18481	NM_203376	388730	Hs.146928	NM_203376	ENSG00000174529	TMEM81	HC3107|KVLA2788|UNQ2788	transmembrane protein 81	protein-coding
chr3.60485369.+	chr3	60485369	60485370	+	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	751764	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr19.2427759.+	chr19	2427759	2427760	+	0	NA	TTS (NM_032737)	TTS (NM_032737)	116	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr7.5334601.-	chr7	5334601	5334602	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12040	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr9.138663349.+	chr9	138663349	138663350	+	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	69318	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr22.31744396.-	chr22	31744396	31744397	-	0	NA	Intergenic	AluSp|SINE|Alu	2147	NM_014323	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr3.117765979.-	chr3	117765979	117765980	-	0	NA	Intergenic	AluSg|SINE|Alu	895944	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	miscRNA
chr17.4926507.+	chr17	4926507	4926508	+	0	NA	"intron (NM_006612, intron 22 of 22)"	AluSc|SINE|Alu	12220	NM_001104577	55065	Hs.632247	NM_001104577	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1	"solute carrier family 52, riboflavin transporter, member 1"	protein-coding
chr20.43040166.-	chr20	43040166	43040167	-	0	NA	"intron (NM_178850, intron 3 of 7)"	"intron (NM_178850, intron 3 of 7)"	-3406	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	miscRNA
chr1.229761512.+	chr1	229761512	229761513	+	0	NA	promoter-TSS (NM_014777)	promoter-TSS (NM_014777)	282	NM_001025247	27097	Hs.270621	NM_001025247	ENSG00000135801	TAF5L	PAF65B	"TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa"	protein-coding
chr1.99544240.-	chr1	99544240	99544241	-	0	NA	"intron (NR_033940, intron 1 of 2)"	SVA_C|Other|Other	73791	NM_001010861	163404	Hs.483948	NM_001010861	ENSG00000117598	LPPR5	PAP2|PAP2D|PRG5	lipid phosphate phosphatase-related protein type 5	protein-coding
chr19.36653245.-	chr19	36653245	36653246	-	0	NA	Intergenic	AluY|SINE|Alu	9474	NM_001864	1346	Hs.421621	NM_001864	ENSG00000161281	COX7A1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)	protein-coding
chr14.106358717.+	chr14	106358717	106358718	+	0	NA	Intergenic	Intergenic	-25121	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr2.111367731.+	chr2	111367731	111367732	+	0	NA	Intergenic	Intergenic	-31422	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr16.440471.-	chr16	440471	440472	-	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	6721	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr6.131434198.-	chr6	131434198	131434199	-	0	NA	Intergenic	AluY|SINE|Alu	22628	NM_016377	9465	Hs.732515	NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A kinase (PRKA) anchor protein 7	protein-coding
chr7.95178735.-	chr7	95178735	95178736	-	0	NA	Intergenic	AluY|SINE|Alu	-47190	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr9.425340.+	chr9	425340	425341	+	0	NA	"intron (NM_001193536, intron 32 of 46)"	AluYb8|SINE|Alu	-44954	NM_001256876	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr7.150812748.-	chr7	150812748	150812749	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28922	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr17.12456638.+	chr17	12456638	12456639	+	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	3353	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr7.821280.+	chr7	821280	821281	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33914	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr10.1577561.-	chr10	1577561	1577562	-	0	NA	"intron (NR_033387, intron 1 of 1)"	"intron (NR_033387, intron 1 of 1)"	-8736	NR_033387	642394	Hs.568831	NR_033387	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	miscRNA
chrX.13062337.+	chrX	13062337	13062338	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	580	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr12.54698993.-	chr12	54698993	54698994	-	0	NA	Intergenic	AluSx1|SINE|Alu	4172	NM_001261461	4778	Hs.75643	NM_001136023	ENSG00000123405	NFE2	NF-E2|p45	"nuclear factor (erythroid-derived 2), 45kDa"	protein-coding
chr13.111268069.+	chr13	111268069	111268070	+	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	138	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr3.183052333.-	chr3	183052333	183052334	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81301	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr22.29760715.-	chr22	29760715	29760716	-	0	NA	"intron (NM_001127, intron 2 of 22)"	AluSx|SINE|Alu	-23857	NM_001127	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	"adaptor-related protein complex 1, beta 1 subunit"	protein-coding
chrX.133643967.+	chrX	133643967	133643968	+	0	NA	Intergenic	L1PA10|LINE|L1	30325	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B	microRNA 450b	miscRNA
chr10.76548035.+	chr10	76548035	76548036	+	0	NA	Intergenic	AluY|SINE|Alu	-38136	NM_001256469	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr16.73461744.-	chr16	73461744	73461745	-	0	NA	Intergenic	AluSg|SINE|Alu	-41040	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr7.1542237.-	chr7	1542237	1542238	-	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	-1781	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr2.224724774.-	chr2	224724774	224724775	-	0	NA	Intergenic	AluSp|SINE|Alu	22455	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chrX.29584335.-	chrX	29584335	29584336	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649340	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr7.16632871.+	chr7	16632871	16632872	+	0	NA	Intergenic	AluJb|SINE|Alu	52571	NM_020319	57037	Hs.157378	NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
chr13.56400478.-	chr13	56400478	56400479	-	0	NA	Intergenic	AluY|SINE|Alu	-651889	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr11.2051207.+	chr11	2051207	2051208	+	0	NA	Intergenic	Intergenic	-32142	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr8.12476342.-	chr8	12476342	12476343	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46778	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr9.108210425.-	chr9	108210425	108210426	-	0	NA	promoter-TSS (NM_207647)	promoter-TSS (NM_207647)	-100	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chrX.53808261.-	chrX	53808261	53808262	-	0	NA	Intergenic	AluYb8|SINE|Alu	94564	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr11.118672115.+	chr11	118672115	118672116	+	0	NA	Intergenic	AluYk4|SINE|Alu	-10143	NM_004397	1656	Hs.408461	NM_001257191		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
chr8.86747637.-	chr8	86747637	86747638	-	0	NA	promoter-TSS (NR_003594).4	promoter-TSS (NR_003594).4	890	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr9.141111313.-	chr9	141111313	141111314	-	0	NA	"intron (NM_001145249, intron 3 of 6)"	AluSc8|SINE|Alu	-4676	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	"family with sequence similarity 157, member B"	protein-coding
chr10.104209692.-	chr10	104209692	104209693	-	0	NA	TTS (NM_024886)	TTS (NM_024886)	-118	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr18.2377790.+	chr18	2377790	2377791	+	0	NA	Intergenic	AluSg7|SINE|Alu	193699	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr22.17652464.-	chr22	17652464	17652465	-	0	NA	Intergenic	CpG	6287	NM_017829	27440	Hs.26890	NM_017829	ENSG00000069998	CECR5	-	"cat eye syndrome chromosome region, candidate 5"	protein-coding
chr5.134094613.+	chr5	134094613	134094614	+	0	NA	"5' UTR (NM_014829, exon 1 of 23)"	"5' UTR (NM_014829, exon 1 of 23)"	152	NM_014829	9879	Hs.406549	NM_014829	ENSG00000145833	DDX46	PRPF5|Prp5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding
chr6.57322595.-	chr6	57322595	57322596	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140173	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr12.112161132.+	chr12	112161132	112161133	+	0	NA	"intron (NM_025247, intron 8 of 20)"	SVA_D|Other|Other	37275	NM_001136538	80724	Hs.331141	NM_001136538	ENSG00000111271	ACAD10	-	"acyl-CoA dehydrogenase family, member 10"	protein-coding
chr3.10218301.-	chr3	10218301	10218302	-	0	NA	"intron (NM_001570, intron 1 of 12)"	AluY|SINE|Alu	-11738	NM_001570	3656	Hs.449207	NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding
chr2.91874350.+	chr2	91874350	91874351	+	0	NA	Intergenic	CpG	-26375	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr14.71374345.+	chr14	71374345	71374346	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	223	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr17.2731935.-	chr17	2731935	2731936	-	0	NA	"intron (NM_015085, intron 2 of 24)"	Tigger16a|DNA|TcMar-Tigger	-32203	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr7.117830924.+	chr7	117830924	117830925	+	0	NA	"intron (NM_016200, intron 3 of 3)"	AluSq|SINE|Alu	6838	NM_016200	51691	Hs.655046	NM_016200		NAA38	LSM8	"N(alpha)-acetyltransferase 38, NatC auxiliary subunit"	protein-coding
chr12.49479733.+	chr12	49479733	49479734	+	0	NA	Intergenic	AluSq|SINE|Alu	8869	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chr8.144512188.+	chr8	144512188	144512189	+	0	NA	"exon (NM_201589, exon 1 of 1)"	"exon (NM_201589, exon 1 of 1)"	414	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr17.79427799.-	chr17	79427799	79427800	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9585	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr9.141038884.-	chr9	141038884	141038885	-	0	NA	Intergenic	Intergenic	5681	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr6.123144186.+	chr6	123144186	123144187	+	0	NA	Intergenic	AluY|SINE|Alu	34215	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chrM.6544.+	chrM	6544	6545	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr5.138089744.+	chr5	138089744	138089745	+	0	NA	"intron (NM_001903, intron 1 of 17)"	CpG	637	NM_001903	1495	Hs.656653	NM_001903	ENSG00000044115	CTNNA1	CAP102	"catenin (cadherin-associated protein), alpha 1, 102kDa"	protein-coding
chr6.151727652.-	chr6	151727652	151727653	-	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	14975	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr13.29293204.+	chr13	29293204	29293205	+	0	NA	promoter-TSS (NM_181785)	promoter-TSS (NM_181785)	-54	NM_181785	283537	Hs.117167	NM_001135919	ENSG00000139508	SLC46A3	FKSG16	"solute carrier family 46, member 3"	protein-coding
chr10.72299628.+	chr10	72299628	72299629	+	0	NA	"intron (NM_014431, intron 15 of 19)"	"intron (NM_014431, intron 15 of 19)"	61064	NM_014431	27143	Hs.202351	NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	"phosphatase domain containing, paladin 1"	protein-coding
chr20.21256203.+	chr20	21256203	21256204	+	0	NA	Intergenic	AluY|SINE|Alu	-27739	NM_012255	22803	Hs.255932	NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
chr5.178287397.-	chr5	178287397	178287398	-	0	NA	"intron (NM_058230, intron 1 of 4)"	CpG	-443	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
chr8.144546596.+	chr8	144546596	144546597	+	0	NA	"intron (NM_015117, intron 9 of 11)"	"intron (NM_015117, intron 9 of 11)"	-33994	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr16.27160360.+	chr16	27160360	27160361	+	0	NA	Intergenic	AluJb|SINE|Alu	-54447	NM_024773	79831	Hs.145717	NM_001145348	ENSG00000155666	KDM8	JMJD5	lysine (K)-specific demethylase 8	protein-coding
chrX.123466520.-	chrX	123466520	123466521	-	0	NA	Intergenic	Intergenic	13612	NM_002351	4068	Hs.349094	NM_001114937	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD	SH2 domain containing 1A	protein-coding
chr4.1400184.-	chr4	1400184	1400185	-	0	NA	Intergenic	CpG	-14844	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr15.41443904.-	chr15	41443904	41443905	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35564	NM_017553	54617	Hs.292949	NM_017553	ENSG00000128908	INO80	INO80A|INOC1|hINO80	INO80 homolog (S. cerevisiae)	protein-coding
chr7.66480047.-	chr7	66480047	66480048	-	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	-18255	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr5.37840529.+	chr5	37840529	37840530	+	0	NA	promoter-TSS (NM_000514)	promoter-TSS (NM_000514)	-747	NM_000514	2668	Hs.248114	NM_000514	ENSG00000168621	GDNF	ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
chr21.43198264.-	chr21	43198264	43198265	-	0	NA	Intergenic	Intergenic	11015	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr12.12847388.+	chr12	12847388	12847389	+	0	NA	"intron (NM_006143, intron 2 of 3)"	AluY|SINE|Alu	1733	NM_006143	2842	Hs.657862	NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
chr10.135050282.+	chr10	135050282	135050283	+	0	NA	Intergenic	CpG	-1126	NM_014468	27287	Hs.125231	NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
chr7.64828170.+	chr7	64828170	64828171	+	0	NA	Intergenic	AluSg|SINE|Alu	-10598	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
chr2.48010446.-	chr2	48010446	48010447	-	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	-225	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr2.208633954.+	chr2	208633954	208633955	+	0	NA	"intron (NM_003468, intron 1 of 1)"	CpG	189	NM_003468	7855	Hs.17631	NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5	frizzled family receptor 5	protein-coding
chr2.10424816.-	chr2	10424816	10424817	-	0	NA	Intergenic	Intergenic	18214	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr1.55483781.+	chr1	55483781	55483782	+	0	NA	Intergenic	AluSx1|SINE|Alu	19164	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr2.10424729.-	chr2	10424729	10424730	-	0	NA	Intergenic	Intergenic	18301	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr9.26387259.-	chr9	26387259	26387260	-	0	NA	Intergenic	AluY|SINE|Alu	-320586	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chrX.152916392.-	chrX	152916392	152916393	-	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	-8495	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr2.109090594.-	chr2	109090594	109090595	-	0	NA	"intron (NM_181453, intron 7 of 22)"	AluY|SINE|Alu	-25017	NM_181453	9648	Hs.469630	XM_003960914	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
chr22.18121349.+	chr22	18121349	18121350	+	0	NA	promoter-TSS (NM_001270735)	promoter-TSS (NM_001270735)	-1	NM_001270735	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr8.144512839.+	chr8	144512839	144512840	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-237	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr14.64806867.+	chr14	64806867	64806868	+	0	NA	Intergenic	L1M5|LINE|L1	-1599	NR_073505	2100	Hs.734416	NM_001040275	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2	estrogen receptor 2 (ER beta)	protein-coding
chr14.50838442.+	chr14	50838442	50838443	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24175	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr13.50701747.-	chr13	50701747	50701748	-	0	NA	Intergenic	CpG-6444	2070	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	miscRNA
chr3.88595815.-	chr3	88595815	88595816	-	0	NA	Intergenic	Intergenic	396799	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr11.68671214.+	chr11	68671214	68671215	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	89	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr16.71814156.-	chr16	71814156	71814157	-	0	NA	"intron (NM_001030007, intron 2 of 23)"	AluSz|SINE|Alu	21766	NR_003059	692111		NR_003059		SNORD71	HBII-239|MIRN768|hsa-mir-768	"small nucleolar RNA, C/D box 71"	snoRNA
chr3.128161127.-	chr3	128161127	128161128	-	0	NA	Intergenic	Intergenic	21310	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr7.33164250.-	chr7	33164250	33164251	-	0	NA	Intergenic	AluYf5|SINE|Alu	4902	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr16.71647932.+	chr16	71647932	71647933	+	0	NA	Intergenic	AluSz|SINE|Alu	-12124	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr15.52535855.-	chr15	52535855	52535856	-	0	NA	"intron (NM_018728, intron 19 of 40)"	"intron (NM_018728, intron 19 of 40)"	-33542	NR_031670	100302202		NR_031670		MIR1266	MIRN1266|hsa-mir-1266	microRNA 1266	miscRNA
chr10.59351204.+	chr10	59351204	59351205	+	0	NA	Intergenic	AluY|SINE|Alu	-286885	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr1.32679388.-	chr1	32679388	32679389	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4693	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr16.29272926.-	chr16	29272926	29272927	-	0	NA	Intergenic	Intergenic	40682	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr11.67759445.-	chr11	67759445	67759446	-	0	NA	"intron (NM_030930, intron 10 of 10)"	CpG	-12148	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
chrX.29584345.+	chrX	29584345	29584346	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-649330	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr8.43413750.+	chr8	43413750	43413751	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	266165	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr15.55726770.-	chr15	55726770	55726771	-	0	NA	"intron (NR_037923, intron 7 of 15)"	BC200|scRNA|scRNA	-26047	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr1.26716812.-	chr1	26716812	26716813	-	0	NA	Intergenic	AluSq|SINE|Alu	17546	NM_173574	257101	Hs.353208	NM_001114759	ENSG00000176083	ZNF683	-	zinc finger protein 683	protein-coding
chr7.5244722.-	chr7	5244722	5244723	-	0	NA	"intron (NM_001033519, intron 2 of 11)"	AluSx|SINE|Alu	9178	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr11.33110422.+	chr11	33110422	33110423	+	0	NA	"intron (NM_001326, intron 17 of 20)"	AluJb|SINE|Alu	12726	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr14.102954935.+	chr14	102954935	102954936	+	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	21193	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr21.33784462.-	chr21	33784462	33784463	-	0	NA	promoter-TSS (NM_058187)	promoter-TSS (NM_058187)	290	NM_058187	59271	Hs.208358	NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
chrY.8786256.-	chrY	8786256	8786257	-	0	NA	Intergenic	SVA_C|Other|Other	100833	NR_001548	83866	Hs.122396	NR_001548	ENSG00000180910	TTTY11	NCRNA00134|TTY11	"testis-specific transcript, Y-linked 11 (non-protein coding)"	miscRNA
chr18.48196382.-	chr18	48196382	48196383	-	0	NA	"intron (NM_002747, intron 2 of 5)"	AluY|SINE|Alu	-109898	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr17.73439426.+	chr17	73439426	73439427	+	0	NA	Intergenic	Intergenic	-13238	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr14.24785811.-	chr14	24785811	24785812	-	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	-3498	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr2.232202241.-	chr2	232202241	232202242	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25178	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chrX.117828374.-	chrX	117828374	117828375	-	0	NA	Intergenic	AluSx|SINE|Alu	33185	NM_001560	3597	Hs.496646	NM_001560	ENSG00000131724	IL13RA1	CD213A1|IL-13Ra|NR4	"interleukin 13 receptor, alpha 1"	protein-coding
chr2.175826242.-	chr2	175826242	175826243	-	0	NA	"intron (NR_038133, intron 1 of 11)"	AluSp|SINE|Alu	-43739	NM_001822	1123	Hs.380138	NM_001025201	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
chr19.19051684.+	chr19	19051684	19051685	+	0	NA	promoter-TSS (NM_001145722)	promoter-TSS (NM_001145722)	357	NM_004838	9454	Hs.720208	NM_001145721	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer homolog 3 (Drosophila)	protein-coding
chr2.198058463.+	chr2	198058463	198058464	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117058	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr5.69056932.-	chr5	69056932	69056933	-	0	NA	Intergenic	AluYa5|SINE|Alu	50660	NR_027386	653188	Hs.654588	NR_027386	ENSG00000253203	GUSBP3	-	"glucuronidase, beta pseudogene 3"	pseudo
chr3.53225176.-	chr3	53225176	53225177	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29953	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr1.40237095.-	chr1	40237095	40237096	-	0	NA	promoter-TSS (NM_022120)	promoter-TSS (NM_022120)	75	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	SCOTT	3-oxoacid CoA transferase 2	protein-coding
chr17.79427786.+	chr17	79427786	79427787	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9572	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr19.1473780.-	chr19	1473780	1473781	-	0	NA	TTS (NM_005883)	TTS (NM_005883)	-5448	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
chr8.36347606.-	chr8	36347606	36347607	-	0	NA	Intergenic	L1PA2|LINE|L1	294236	NM_001031836	157855	Hs.13861	NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	"potassium channel, subfamily U, member 1"	protein-coding
chr8.103501910.-	chr8	103501910	103501911	-	0	NA	Intergenic	Intergenic	61938	NM_024410	4956	Hs.159274	NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
chr3.77641960.+	chr3	77641960	77641961	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494797	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr5.125759091.-	chr5	125759091	125759092	-	0	NA	"5' UTR (NM_023927, exon 1 of 14)"	"5' UTR (NM_023927, exon 1 of 14)"	-222	NM_023927	65983	Hs.363558	NM_001146319	ENSG00000155324	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
chr1.2447003.+	chr1	2447003	2447004	+	0	NA	"exon (NM_018216, exon 10 of 19)"	"exon (NM_018216, exon 10 of 19)"	11032	NM_018216	55229	Hs.26156	NM_018216	ENSG00000157881	PANK4	-	pantothenate kinase 4	protein-coding
chr2.237068250.-	chr2	237068250	237068251	-	0	NA	Intergenic	CpG	-8402	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr14.105045992.+	chr14	105045992	105045993	+	0	NA	promoter-TSS (NM_001008404)	promoter-TSS (NM_001008404)	-64	NM_001008404	400258	Hs.153827	NM_001008404		C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
chr14.77743546.+	chr14	77743546	77743547	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5891	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr3.164119714.+	chr3	164119714	164119715	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676569	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr14.99711932.-	chr14	99711932	99711933	-	0	NA	"intron (NM_138576, intron 2 of 3)"	CpG	-25890	NM_022898	64919	Hs.709690	NM_022898	ENSG00000127152	BCL11B	ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
chr20.32031782.-	chr20	32031782	32031783	-	0	NA	promoter-TSS (NM_003098)	promoter-TSS (NM_003098)	84	NM_003098	6640	Hs.31121	NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	"syntrophin, alpha 1"	protein-coding
chr3.21384762.-	chr3	21384762	21384763	-	0	NA	Intergenic	AluY|SINE|Alu	62456	NR_002311	391518	Hs.543226	NR_002311	ENSG00000236380	VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo
chr3.129048095.-	chr3	129048095	129048096	-	0	NA	Intergenic	AluY|SINE|Alu	12975	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr8.130306072.+	chr8	130306072	130306073	+	0	NA	Intergenic	AluY|SINE|Alu	-52586	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LOC728724	-	hCG1814486	miscRNA
chr22.25202265.-	chr22	25202265	25202266	-	0	NA	"5' UTR (NM_001098498, exon 1 of 24)"	"5' UTR (NM_001098498, exon 1 of 24)"	-129	NM_133454	129049	Hs.620906	NM_001039948	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
chr16.53407640.-	chr16	53407640	53407641	-	0	NA	Intergenic	CpG	2599	NM_001207030	643802	Hs.673062	NM_001207030		LOC643802	-	u3 small nucleolar ribonucleoprotein protein MPP10-like	protein-coding
chr16.1967743.-	chr16	1967743	1967744	-	0	NA	"intron (NM_001009606, intron 1 of 1)"	"intron (NM_001009606, intron 1 of 1)"	-488	NM_001009606	64711	Hs.670144	NM_001009606	ENSG00000162040	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
chr11.17410896.+	chr11	17410896	17410897	+	0	NA	promoter-TSS (NM_001166290)	promoter-TSS (NM_001166290)	-18	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|PHHI|TNDM3	"potassium inwardly-rectifying channel, subfamily J, member 11"	protein-coding
chr2.99952706.+	chr2	99952706	99952707	+	0	NA	"5' UTR (NM_005783, exon 1 of 5)"	"5' UTR (NM_005783, exon 1 of 5)"	154	NM_005783	10190	Hs.536122	NM_005783	ENSG00000115514	TXNDC9	APACD|PHLP3	thioredoxin domain containing 9	protein-coding
chr9.138959034.-	chr9	138959034	138959035	-	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	-28097	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr6.2221717.+	chr6	2221717	2221718	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24151	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr16.85061431.-	chr16	85061431	85061432	-	0	NA	promoter-TSS (NM_014732)	promoter-TSS (NM_014732)	-21	NM_014732	9764	Hs.301658	NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
chr8.22594714.-	chr8	22594714	22594715	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43899	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr10.135031512.+	chr10	135031512	135031513	+	0	NA	"intron (NM_152643, intron 26 of 29)"	AluSg|SINE|Alu	-12266	NM_003577	8433	Hs.458406	NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
chr2.69065693.+	chr2	69065693	69065694	+	0	NA	Intergenic	AluY|SINE|Alu	32956	NM_014482	27302	Hs.158317	NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
chr8.141482879.-	chr8	141482879	141482880	-	0	NA	Intergenic	AluY|SINE|Alu	14201	NM_031466	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr7.533046.-	chr7	533046	533047	-	0	NA	Intergenic	AluSx1|SINE|Alu	-26435	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr9.35846373.+	chr9	35846373	35846374	+	0	NA	"exon (NM_001042590, exon 8 of 13)"	"exon (NM_001042590, exon 8 of 13)"	-13898	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr1.5005210.+	chr1	5005210	5005211	+	0	NA	Intergenic	Intergenic	290105	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr1.94375265.-	chr1	94375265	94375266	-	0	NA	promoter-TSS (NM_002061)	promoter-TSS (NM_002061)	253	NM_002061	2730	Hs.315562	NM_002061		GCLM	GLCLR	"glutamate-cysteine ligase, modifier subunit"	protein-coding
chr5.79605839.-	chr5	79605839	79605840	-	0	NA	Intergenic	LTR12C|LTR|ERV1	9542	NR_004845	644936	Hs.627173	NR_004845		LOC644936	-	"actin, beta pseudogene"	pseudo
chr6.88117993.-	chr6	88117993	88117994	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-303	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr22.35957957.+	chr22	35957957	35957958	+	0	NA	Intergenic	Intergenic	20605	NM_014310	23551	Hs.474711	NM_014310	ENSG00000100302	RASD2	MGC:4834|Rhes|TEM2	"RASD family, member 2"	protein-coding
chr19.3451507.+	chr19	3451507	3451508	+	0	NA	"intron (NM_001245005, intron 7 of 9)"	AluJb|SINE|Alu	29033	NM_001136503	284422	Hs.130714	NM_001136503	ENSG00000095932	C19orf77	-	chromosome 19 open reading frame 77	protein-coding
chr17.35829302.+	chr17	35829302	35829303	+	0	NA	"intron (NM_001488, intron 12 of 15)"	AluSx|SINE|Alu	-20649	NM_007026	11072	Hs.91448	NM_007026	ENSG00000161326	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
chr12.133808132.-	chr12	133808132	133808133	-	0	NA	"exon (NM_001191054, exon 3 of 9)"	"exon (NM_001191054, exon 3 of 9)"	-4290	NM_001191054	647589	Hs.703008	NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
chr2.101245833.-	chr2	101245833	101245834	-	0	NA	Intergenic	Intergenic	-66415	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.27645648.-	chr2	27645648	27645649	-	0	NA	Intergenic	AluSq2|SINE|Alu	5825	NM_013392	29959	Hs.515876	NM_013392	ENSG00000115216	NRBP1	BCON3|MADM|MUDPNP|NRBP	nuclear receptor binding protein 1	protein-coding
chr7.2290241.-	chr7	2290241	2290242	-	0	NA	"intron (NM_198949, intron 4 of 4)"	AluY|SINE|Alu	-7701	NM_198953	4521	Hs.534331	NM_002452	ENSG00000106268	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
chr8.104512598.+	chr8	104512598	104512599	+	0	NA	promoter-TSS (NM_001100117)	promoter-TSS (NM_001100117)	-378	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr12.51681510.-	chr12	51681510	51681511	-	0	NA	"intron (NM_016293, intron 11 of 12)"	AluY|SINE|Alu	17308	NM_001031628	57228	Hs.652389	NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
chrX.18849771.+	chrX	18849771	18849772	+	0	NA	Intergenic	AluY|SINE|Alu	-58643	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr12.122479169.+	chr12	122479169	122479170	+	0	NA	"intron (NM_001024808, intron 3 of 5)"	MIRb|SINE|MIR	19308	NM_001024808	605	Hs.530970	NM_001024808		BCL7A	BCL7	B-cell CLL/lymphoma 7A	protein-coding
chr11.16587535.-	chr11	16587535	16587536	-	0	NA	Intergenic	AluY|SINE|Alu	89600	NM_033326	55553	Hs.368226	NM_001145811	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
chr8.56098975.-	chr8	56098975	56098976	-	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	-83958	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr11.16894127.-	chr11	16894127	16894128	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-133979	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr16.3203710.+	chr16	3203710	3203711	+	0	NA	Intergenic	AluSg|SINE|Alu	18576	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr16.71414320.+	chr16	71414320	71414321	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21704	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
chr3.189144218.+	chr3	189144218	189144219	+	0	NA	Intergenic	AluSx|SINE|Alu	-185835	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	miscRNA
chr15.41709801.+	chr15	41709801	41709802	+	0	NA	"intron (NM_015138, intron 1 of 17)"	CpG	499	NM_015138	23168	Hs.511096	NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	"Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)"	protein-coding
chr19.39810749.+	chr19	39810749	39810750	+	0	NA	Intergenic	Intergenic	-4773	NM_020862	57622	Hs.97860	NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
chr9.12352810.+	chr9	12352810	12352811	+	0	NA	Intergenic	AluY|SINE|Alu	-340576	NM_000550	7306	Hs.270279	NM_000550	ENSG00000107165	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
chr2.47660755.+	chr2	47660755	47660756	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	30549	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr22.49969178.-	chr22	49969178	49969179	-	0	NA	Intergenic	Intergenic	-82012	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr6.57322623.-	chr6	57322623	57322624	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140201	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr16.33293955.-	chr16	33293955	33293956	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4747	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr10.135075446.-	chr10	135075446	135075447	-	0	NA	TTS (NM_001164490)	TTS (NM_001164490)	14322	NR_030170	574448		NR_030170	ENSG00000199089	MIR202	MIRN202|hsa-mir-202	microRNA 202	miscRNA
chr6.88118008.-	chr6	88118008	88118009	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-318	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr1.41832113.+	chr1	41832113	41832114	+	0	NA	Intergenic	CpG	118231	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chrX.147774552.+	chrX	147774552	147774553	+	0	NA	"intron (NM_002025, intron 3 of 20)"	AluY|SINE|Alu	-26063	NM_001170628	2334	Hs.496911	NM_001169122	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	"AF4/FMR2 family, member 2"	protein-coding
chr12.118079902.-	chr12	118079902	118079903	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280295	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr2.122878795.-	chr2	122878795	122878796	-	0	NA	Intergenic	AluY|SINE|Alu	-365674	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr17.48422547.-	chr17	48422547	48422548	-	0	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	846	NM_022167	64132	Hs.463416	NM_022167	ENSG00000015532	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
chr11.7695526.+	chr11	7695526	7695527	+	0	NA	promoter-TSS (NM_016229)	promoter-TSS (NM_016229)	-705	NM_016229	51700	Hs.414362	NM_001001336	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
chr17.26336769.+	chr17	26336769	26336770	+	0	NA	Intergenic	AluSz|SINE|Alu	-32919	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chrX.21676541.-	chrX	21676541	21676542	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	93	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr7.66064184.+	chr7	66064184	66064185	+	0	NA	Intergenic	AluY|SINE|Alu	-20686	NR_002933	493754	Hs.741442	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
chr19.10041257.-	chr19	10041257	10041258	-	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	-5813	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chrX.91037179.+	chrX	91037179	91037180	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2919	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr14.90540074.+	chr14	90540074	90540075	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSx|SINE|Alu	11966	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr7.121013892.+	chr7	121013892	121013893	+	0	NA	"intron (NM_001040020, intron 3 of 9)"	AluY|SINE|Alu	22530	NM_014888	10447	Hs.434053	NM_001040020	ENSG00000196937	FAM3C	ILEI	"family with sequence similarity 3, member C"	protein-coding
chr19.8627178.-	chr19	8627178	8627179	-	0	NA	"intron (NM_012335, intron 1 of 27)"	AluY|SINE|Alu	-15153	NM_012335	4542	Hs.465818	NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
chr3.36421982.-	chr3	36421982	36421983	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	115	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr5.57859510.-	chr5	57859510	57859511	-	0	NA	Intergenic	SVA_A|Other|Other	19429	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr17.22012659.+	chr17	22012659	22012660	+	0	NA	Intergenic	Intergenic	-9778	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
chr4.184656695.-	chr4	184656695	184656696	-	0	NA	Intergenic	SVA_E|Other|Other	-76275	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY	trafficking protein particle complex 11	protein-coding
chr14.105134391.+	chr14	105134391	105134392	+	0	NA	Intergenic	AluSz|SINE|Alu	9695	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr17.21825561.+	chr17	21825561	21825562	+	0	NA	"non-coding (NR_028336, exon 1 of 2)"	"non-coding (NR_028336, exon 1 of 2)"	191	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr2.10130544.+	chr2	10130544	10130545	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSx1|SINE|Alu	38752	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr12.89918697.-	chr12	89918697	89918698	-	0	NA	promoter-TSS (NM_003774)	promoter-TSS (NM_003774)	114	NM_003774	8693	Hs.25130	NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)	protein-coding
chr5.172671310.+	chr5	172671310	172671311	+	0	NA	Intergenic	CpG	-8995	NM_004387	1482	Hs.54473	NM_001166175	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
chr22.46326796.+	chr22	46326796	46326797	+	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	46212	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chrX.136083596.-	chrX	136083596	136083597	-	0	NA	Intergenic	SVA_D|Other|Other	-30237	NM_054021	83550	Hs.350569	NM_054021	ENSG00000165370	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
chr1.156527497.-	chr1	156527497	156527498	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14899	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr14.73681875.+	chr14	73681875	73681876	+	0	NA	"intron (NM_000021, intron 10 of 11)"	AluSz|SINE|Alu	-22330	NM_173462	89932	Hs.509909	NM_173462	ENSG00000100767	PAPLN	-	"papilin, proteoglycan-like sulfated glycoprotein"	protein-coding
chr18.11669751.+	chr18	11669751	11669752	+	0	NA	Intergenic	Intergenic	-19263	NM_182978	2774	Hs.741448	NM_002071	ENSG00000141404	GNAL	-	"guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type"	protein-coding
chrX.129231011.-	chrX	129231011	129231012	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13464	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr13.50297693.+	chr13	50297693	50297694	+	0	NA	"intron (NM_002267, intron 7 of 16)"	AluSg7|SINE|Alu	-32070	NM_032565	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein-like	protein-coding
chr5.1494508.+	chr5	1494508	1494509	+	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	29568	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr1.2157810.-	chr1	2157810	2157811	-	0	NA	Intergenic	AluJb|SINE|Alu	2324	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr19.11060461.+	chr19	11060461	11060462	+	0	NA	Intergenic	AluY|SINE|Alu	-11137	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr2.234157313.-	chr2	234157313	234157314	-	0	NA	Intergenic	AluSx1|SINE|Alu	2904	NM_001190266	55054	Hs.529322	NM_001190266	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
chr7.290036.-	chr7	290036	290037	-	0	NA	"intron (NM_020223, intron 5 of 9)"	"intron (NM_020223, intron 5 of 9)"	40100	NM_001195127	100288524	Hs.702860	NM_001195127		LOC100288524	-	forkhead box L1-like	protein-coding
chr2.156430255.+	chr2	156430255	156430256	+	0	NA	Intergenic	AluYk4|SINE|Alu	759032	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr14.23233380.+	chr14	23233380	23233381	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2351	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr17.64298405.+	chr17	64298405	64298406	+	0	NA	promoter-TSS (NM_002737)	promoter-TSS (NM_002737)	-521	NM_002737	5578	Hs.708867	NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PRKACA	"protein kinase C, alpha"	protein-coding
chr8.7414174.+	chr8	7414174	7414175	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2452	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chrX.40019626.+	chrX	40019626	40019627	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluY|SINE|Alu	16956	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr8.125234421.+	chr8	125234421	125234422	+	0	NA	Intergenic	AluSx3|SINE|Alu	150519	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chrX.78605623.-	chrX	78605623	78605624	-	0	NA	Intergenic	AluSx1|SINE|Alu	-17426	NM_004867	9452	Hs.17109	NM_001171581	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
chr8.1321572.-	chr8	1321572	1321573	-	0	NA	Intergenic	CpG	70745	NR_033895	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	miscRNA
chr1.68960589.+	chr1	68960589	68960590	+	0	NA	"intron (NM_017779, intron 1 of 10)"	AluSp|SINE|Alu	2210	NM_017779	55635	Hs.445098	NM_001114120	ENSG00000024526	DEPDC1	DEP.8|DEPDC1-V2|DEPDC1A|SDP35	DEP domain containing 1	protein-coding
chr17.40601033.-	chr17	40601033	40601034	-	0	NA	Intergenic	SVA_D|Other|Other	9829	NM_001130021	535	Hs.463074	NM_001130020	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	"ATPase, H+ transporting, lysosomal V0 subunit a1"	protein-coding
chr12.33592854.-	chr12	33592854	33592855	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	100	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr5.693732.+	chr5	693732	693733	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-222	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr11.73020374.+	chr11	73020374	73020375	+	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	711	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr16.81130124.+	chr16	81130124	81130125	+	0	NA	promoter-TSS (NM_004483)	promoter-TSS (NM_004483)	-144	NM_004483	2653	Hs.546256	NM_004483	ENSG00000140905	GCSH	GCE|NKH	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
chr19.45660330.+	chr19	45660330	45660331	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3078	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr8.142397038.-	chr8	142397038	142397039	-	0	NA	Intergenic	Intergenic	19673	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr3.28951348.-	chr3	28951348	28951349	-	0	NA	Intergenic	AluY|SINE|Alu	-334579	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr7.6647342.-	chr7	6647342	6647343	-	0	NA	"intron (NM_024067, intron 5 of 5)"	CpG	8185	NM_017560	54753	Hs.592170	NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
chr11.5623396.-	chr11	5623396	5623397	-	0	NA	"intron (NM_001198645, intron 1 of 5)"	AluY|SINE|Alu	-5531	NM_001003818	117854	Hs.729048	NM_001003818	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
chr18.11959885.+	chr18	11959885	11959886	+	0	NA	Intergenic	SVA_D|Other|Other	-21542	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr3.96533581.+	chr3	96533581	96533582	+	0	NA	"exon (NM_001080448, exon 1 of 18)"	"exon (NM_001080448, exon 1 of 18)"	156	NM_001080448	285220	Hs.653244	NM_001080448	ENSG00000080224	EPHA6	EK12|EPA6|PRO57066	EPH receptor A6	protein-coding
chr3.22843326.-	chr3	22843326	22843327	-	0	NA	Intergenic	L1PA2|LINE|L1	401458	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr6.24587709.+	chr6	24587709	24587710	+	0	NA	"intron (NM_001168377, intron 4 of 18)"	AluY|SINE|Alu	-4254	NM_001252328	9856	Hs.26441	NM_001168374	ENSG00000137261	KIAA0319	DYLX2|DYX2	KIAA0319	protein-coding
chr4.26862517.+	chr4	26862517	26862518	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	204	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr17.45077798.+	chr17	45077798	45077799	+	0	NA	Intergenic	AluSz6|SINE|Alu	-21184	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr2.47721599.+	chr2	47721599	47721600	+	0	NA	Intergenic	Intergenic	75871	NM_022055	56660	Hs.591586	NM_022055		KCNK12	K2p12.1|THIK-2|THIK2	"potassium channel, subfamily K, member 12"	protein-coding
chr15.90328002.+	chr15	90328002	90328003	+	0	NA	TTS (NM_001150)	TTS (NM_001150)	8413	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr11.64073480.-	chr11	64073480	64073481	-	0	NA	"intron (NM_004451, intron 1 of 6)"	CpG	-436	NM_004451	2101	Hs.110849	NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen-related receptor alpha	protein-coding
chr3.164119747.+	chr3	164119747	164119748	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676536	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr7.6454034.-	chr7	6454034	6454035	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	-33609	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr7.50673344.-	chr7	50673344	50673345	-	0	NA	"intron (NM_001001549, intron 10 of 14)"	"intron (NM_001001549, intron 10 of 14)"	40190	NM_001082971	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
chr2.130899431.+	chr2	130899431	130899432	+	0	NA	"intron (NM_207310, intron 3 of 7)"	"intron (NM_207310, intron 3 of 7)"	3276	NM_001258307	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chr6.1035029.+	chr6	1035029	1035030	+	0	NA	"intron (NR_027115, intron 1 of 4)"	"intron (NR_027115, intron 1 of 4)"	66538	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	miscRNA
chr14.32466625.-	chr14	32466625	32466626	-	0	NA	Intergenic	AluY|SINE|Alu	-79280	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	miscRNA
chr16.31448935.-	chr16	31448935	31448936	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	"intron (NM_001136509, intron 1 of 1)"	-5413	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr16.4761003.-	chr16	4761003	4761004	-	0	NA	"intron (NM_001242929, intron 4 of 14)"	AluSz|SINE|Alu	-17309	NM_001193452	84309	Hs.513315	NM_001193452	ENSG00000168101	NUDT16L1	SDOS	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding
chr10.30847998.+	chr10	30847998	30847999	+	0	NA	Intergenic	AluSp|SINE|Alu	70649	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
chr16.89258766.+	chr16	89258766	89258767	+	0	NA	"exon (NM_004933, exon 11 of 14)"	"exon (NM_004933, exon 11 of 14)"	7763	NM_001242757	146429	Hs.743726	NM_001242757		SLC22A31	-	"solute carrier family 22, member 31"	protein-coding
chr9.34070253.+	chr9	34070253	34070254	+	0	NA	Intergenic	AluSz|SINE|Alu	-21306	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr11.62418854.+	chr11	62418854	62418855	+	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	1920	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chrX.18849790.-	chrX	18849790	18849791	-	0	NA	Intergenic	AluY|SINE|Alu	58624	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	miscRNA
chr10.73469125.+	chr10	73469125	73469126	+	0	NA	"intron (NM_022124, intron 26 of 67)"	"intron (NM_022124, intron 26 of 67)"	10453	NM_001164375	414152	Hs.568788	NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
chr6.114387710.+	chr6	114387710	114387711	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3669	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chr2.152219144.+	chr2	152219144	152219145	+	0	NA	"intron (NM_007115, intron 1 of 5)"	AluY|SINE|Alu	5038	NM_007115	7130	Hs.437322	NM_007115	ENSG00000123610	TNFAIP6	TSG-6|TSG6	"tumor necrosis factor, alpha-induced protein 6"	protein-coding
chr5.14460449.-	chr5	14460449	14460450	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121442	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr2.220361252.+	chr2	220361252	220361253	+	0	NA	Intergenic	Intergenic	-2335	NM_013335	29926	Hs.27059	NM_013335	ENSG00000144591	GMPPA	-	GDP-mannose pyrophosphorylase A	protein-coding
chr1.156297728.+	chr1	156297728	156297729	+	0	NA	"intron (NM_001008800, intron 3 of 11)"	SVA_D|Other|Other	-9377	NM_144627	128229	Hs.534539	NM_144627	ENSG00000163467	TSACC	C1orf182|RP11-443G18.5|SIP|SSTK-IP	TSSK6 activating co-chaperone	protein-coding
chrX.12751713.-	chrX	12751713	12751714	-	0	NA	Intergenic	AluY|SINE|Alu	57761	NM_002765	5634	Hs.654581	NM_001039091	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chr1.26488497.+	chr1	26488497	26488498	+	0	NA	"exon (NM_024869, exon 2 of 2)"	"exon (NM_024869, exon 2 of 2)"	2986	NM_024869	79927	Hs.694119	NM_024869	ENSG00000197245	FAM110D	GRRP1|RP11-96L14.5	"family with sequence similarity 110, member D"	protein-coding
chr2.29662849.+	chr2	29662849	29662850	+	0	NA	"intron (NM_004304, intron 4 of 28)"	AluSx1|SINE|Alu	324541	NM_024692	79745	Hs.122927	NM_024692	ENSG00000115295	CLIP4	RSNL2	"CAP-GLY domain containing linker protein family, member 4"	protein-coding
chr1.160239904.-	chr1	160239904	160239905	-	0	NA	Intergenic	AluJo|SINE|Alu	7554	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr19.1725691.-	chr19	1725691	1725692	-	0	NA	Intergenic	CpG	27971	NM_001080488	390874	Hs.654347	NM_001080488		ONECUT3	OC3	one cut homeobox 3	protein-coding
chr9.6807783.-	chr9	6807783	6807784	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50142	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr21.47838771.+	chr21	47838771	47838772	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40091	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr7.5257660.-	chr7	5257660	5257661	-	0	NA	"intron (NM_001033519, intron 6 of 11)"	"intron (NM_001033519, intron 6 of 11)"	-3760	NM_001033520	26100	Hs.122363	NM_001033518	ENSG00000157954	WIPI2	ATG18B|Atg21|WIPI-2	"WD repeat domain, phosphoinositide interacting 2"	protein-coding
chr2.240371696.+	chr2	240371696	240371697	+	0	NA	Intergenic	SVA_D|Other|Other	-49053	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr3.46792327.+	chr3	46792327	46792328	+	0	NA	Intergenic	CpG	-6082	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr17.41382397.+	chr17	41382397	41382398	+	0	NA	Intergenic	AluSx|SINE|Alu	-1335	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	miscRNA
chr17.28675365.-	chr17	28675365	28675366	-	0	NA	Intergenic	AluY|SINE|Alu	14300	NM_206832	388364	Hs.371005	NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
chr18.11867630.-	chr18	11867630	11867631	-	0	NA	"intron (NM_182978, intron 8 of 11)"	AluYk4|SINE|Alu	-10193	NM_001261444	2774	Hs.741448	NM_002071	ENSG00000141404	GNAL	-	"guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type"	protein-coding
chr10.135094702.-	chr10	135094702	135094703	-	0	NA	"intron (NM_006659, intron 17 of 17)"	(GGCTG)n|Simple_repeat|Simple_repeat	4295	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr7.100044662.+	chr7	100044662	100044663	+	0	NA	Intergenic	AluY|SINE|Alu	-10568	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr2.239047568.-	chr2	239047568	239047569	-	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	-205	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr16.586241.-	chr16	586241	586242	-	0	NA	TTS (NR_049852)	TTS (NR_049852)	-925	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	miscRNA
chr7.5558102.+	chr7	5558102	5558103	+	0	NA	Intergenic	AluYc|SINE|Alu	-4703	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr5.1137796.-	chr5	1137796	1137797	-	0	NA	Intergenic	Intergenic	25624	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr1.151742002.-	chr1	151742002	151742003	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2871	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr11.73020404.-	chr11	73020404	73020405	-	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	-741	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr15.89721832.+	chr15	89721832	89721833	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43090	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr12.133115249.+	chr12	133115249	133115250	+	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	48092	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr11.69189611.+	chr11	69189611	69189612	+	0	NA	Intergenic	Intergenic	127989	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr2.11311836.+	chr2	11311836	11311837	+	0	NA	"intron (NM_152391, intron 4 of 6)"	AluY|SINE|Alu	16296	NM_152391	130814	Hs.274415	NM_152391	ENSG00000162976	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
chr2.74315052.-	chr2	74315052	74315053	-	0	NA	"exon (NM_144993, exon 4 of 9)"	"exon (NM_144993, exon 4 of 9)"	-41602	NM_144993	200424	Hs.516107	NM_144993		TET3	-	tet methylcytosine dioxygenase 3	protein-coding
chr12.58059380.-	chr12	58059380	58059381	-	0	NA	Intergenic	SVA_A|Other|Other	28358	NM_001017956	10956	Hs.527861	NM_001017956	ENSG00000135506	OS9	ERLEC2|OS-9	"osteosarcoma amplified 9, endoplasmic reticulum lectin"	protein-coding
chrX.103014810.+	chrX	103014810	103014811	+	0	NA	Intergenic	AluY|SINE|Alu	-16629	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr7.148762033.-	chr7	148762033	148762034	-	0	NA	Intergenic	Intergenic	-25836	NM_152411	136051	Hs.729572	NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
chr12.132372612.+	chr12	132372612	132372613	+	0	NA	Intergenic	AluSx|SINE|Alu	-6667	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr7.532195.-	chr7	532195	532196	-	0	NA	Intergenic	Intergenic	-27286	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr6.157468594.-	chr6	157468594	157468595	-	0	NA	"intron (NM_020732, intron 8 of 19)"	C-rich|Low_complexity|Low_complexity	-276659	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr11.17160898.-	chr11	17160898	17160899	-	0	NA	"intron (NM_002645, intron 7 of 31)"	AluSx|SINE|Alu	-30456	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr22.42027282.+	chr22	42027282	42027283	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9987	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr12.6265470.-	chr12	6265470	6265471	-	0	NA	Intergenic	AluSx1|SINE|Alu	31634	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
chr21.37627694.-	chr21	37627694	37627695	-	0	NA	"intron (NM_005128, intron 23 of 36)"	AluSz6|SINE|Alu	64793	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr3.125203802.-	chr3	125203802	125203803	-	0	NA	"intron (NR_073435, intron 5 of 12)"	AluSx1|SINE|Alu	-35256	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr2.128965901.-	chr2	128965901	128965902	-	0	NA	Intergenic	SVA_F|Other|Other	-110270	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr20.43341976.-	chr20	43341976	43341977	-	0	NA	Intergenic	AluSx|SINE|Alu	1909	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr7.5610945.+	chr7	5610945	5610946	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21491	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	"fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)"	protein-coding
chrX.47178744.+	chrX	47178744	47178745	+	0	NA	Intergenic	AluY|SINE|Alu	-51255	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
chr1.55483749.-	chr1	55483749	55483750	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19132	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr3.17187215.-	chr3	17187215	17187216	-	0	NA	Intergenic	Intergenic	-212527	NR_037465	100500913		NR_037465	ENSG00000264818	MIR3714	-	microRNA 3714	miscRNA
chr9.11197002.+	chr9	11197002	11197003	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584279	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr7.157129526.+	chr7	157129526	157129527	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-184	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr4.17513841.+	chr4	17513841	17513842	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	16	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr2.240030757.+	chr2	240030757	240030758	+	0	NA	"intron (NM_006037, intron 14 of 26)"	"intron (NM_006037, intron 14 of 26)"	-23135	NR_039643	100616493		NR_039643		MIR4441	-	microRNA 4441	miscRNA
chr15.77925898.-	chr15	77925898	77925899	-	0	NA	Intergenic	CpG-8131	1189	NM_032808	84894	Hs.743432	NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
chr6.66681570.-	chr6	66681570	66681571	-	0	NA	Intergenic	L1PA3|LINE|L1	-183798	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	"solute carrier family 25, member 51 pseudogene 1"	pseudo
chr16.89034208.-	chr16	89034208	89034209	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9296	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr11.35547395.+	chr11	35547395	35547396	+	0	NA	promoter-TSS (NM_015430)	promoter-TSS (NM_015430)	-219	NM_001001991	25891	Hs.55044	NM_001001991	ENSG00000149090	PAMR1	DKFZP586H2123|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
chr10.134411421.-	chr10	134411421	134411422	-	0	NA	"intron (NM_005539, intron 1 of 15)"	CpG	-60068	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr13.88877259.+	chr13	88877259	88877260	+	0	NA	Intergenic	AluY|SINE|Alu	-315825	NR_047021	100874168	Hs.126406	NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	miscRNA
chr18.47721100.-	chr18	47721100	47721101	-	0	NA	"intron (NM_001080467, intron 1 of 39)"	CpG	-351	NM_001080467	4645	Hs.720076	NM_001080467	ENSG00000167306	MYO5B	-	myosin VB	protein-coding
chrX.122993616.-	chrX	122993616	122993617	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	46	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr4.1626803.-	chr4	1626803	1626804	-	0	NA	Intergenic	CpG	-58915	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr1.212973148.+	chr1	212973148	212973149	+	0	NA	"intron (NM_001146170, intron 4 of 8)"	AluSz6|SINE|Alu	7978	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
chr11.124669752.+	chr11	124669752	124669753	+	0	NA	"intron (NM_024631, intron 1 of 3)"	CpG	547	NM_024631	79684	Hs.146079	NM_024631	ENSG00000120458	MSANTD2	C11orf61	Myb/SANT-like DNA-binding domain containing 2	protein-coding
chr18.41408396.+	chr18	41408396	41408397	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550781	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr22.18764009.+	chr22	18764009	18764010	+	0	NA	"intron (NR_003267, intron 8 of 12)"	AluY|SINE|Alu	15465	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
chr6.57322615.+	chr6	57322615	57322616	+	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	140193	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr13.31024098.-	chr13	31024098	31024099	-	0	NA	Intergenic	AluSq2|SINE|Alu	-15983	NM_002128	3146	Hs.596078	NM_002128		HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
chr19.55770567.+	chr19	55770567	55770568	+	0	NA	promoter-TSS (NM_014931)	promoter-TSS (NM_014931)	-529	NM_014931	22870	Hs.515610	NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	"protein phosphatase 6, regulatory subunit 1"	protein-coding
chr2.198058491.+	chr2	198058491	198058492	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117030	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr5.177264231.-	chr5	177264231	177264232	-	0	NA	Intergenic	AluY|SINE|Alu	38031	NR_003615	728554	Hs.535769	NR_003615	ENSG00000170089	LOC728554	-	THO complex 3 pseudogene	pseudo
chr20.60623999.+	chr20	60623999	60624000	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16867	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr7.2933096.-	chr7	2933096	2933097	-	0	NA	Intergenic	AluSx1|SINE|Alu	49137	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr17.73439422.-	chr17	73439422	73439423	-	0	NA	Intergenic	AluY|SINE|Alu	13242	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr2.162137802.+	chr2	162137802	162137803	+	0	NA	Intergenic	Intergenic	-26984	NM_005805	10213	Hs.740477	NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 14"	protein-coding
chr7.2092594.-	chr7	2092594	2092595	-	0	NA	"intron (NM_001013836, intron 12 of 18)"	"intron (NM_001013836, intron 12 of 18)"	-179989	NM_001013836	8379	Hs.654838	NM_001013836	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
chr1.54966384.+	chr1	54966384	54966385	+	0	NA	Intergenic	AluSq|SINE|Alu	-47423	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr2.175525827.-	chr2	175525827	175525828	-	0	NA	"intron (NM_001077269, intron 1 of 7)"	"intron (NM_001077269, intron 1 of 7)"	-21800	NM_001077269	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr12.26055514.-	chr12	26055514	26055515	-	0	NA	Intergenic	AluSc8|SINE|Alu	28502	NR_036188	100422897		NR_036188		MIR4302	-	microRNA 4302	miscRNA
chr7.61969552.-	chr7	61969552	61969553	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-794882	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr11.9346818.-	chr11	9346818	9346819	-	0	NA	Intergenic	AluSx1|SINE|Alu	10503	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chr1.145400435.+	chr1	145400435	145400436	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12756	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr19.57148752.-	chr19	57148752	57148753	-	0	NA	Intergenic	AluY|SINE|Alu	5775	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
chr12.132157777.-	chr12	132157777	132157778	-	0	NA	Intergenic	Intergenic	37855	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr1.27503608.+	chr1	27503608	27503609	+	0	NA	Intergenic	Intergenic	-21987	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr11.4258899.+	chr11	4258899	4258900	+	0	NA	Intergenic	SVA_B|Other|Other	50517	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr4.38190452.-	chr4	38190452	38190453	-	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-68877	NM_001253915	23216	Hs.176503	NM_001253912	ENSG00000065882	TBC1D1	TBC|TBC1	"TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1"	protein-coding
chr10.105293316.-	chr10	105293316	105293317	-	0	NA	"intron (NM_004210, intron 1 of 5)"	AluY|SINE|Alu	-39581	NM_004210	9148	Hs.594708	NM_004210	ENSG00000107954	NEURL	NEURL1|RNF67|bA416N2.1|neu|neu-1	neuralized homolog (Drosophila)	protein-coding
chr6.123144176.-	chr6	123144176	123144177	-	0	NA	Intergenic	AluY|SINE|Alu	-34205	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr12.33592626.-	chr12	33592626	33592627	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-128	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr5.3188295.+	chr5	3188295	3188296	+	0	NA	Intergenic	CpG	347913	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr4.26862251.-	chr4	26862251	26862252	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	62	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr17.8061008.+	chr17	8061008	8061009	+	0	NA	Intergenic	AluY|SINE|Alu	-5255	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr14.101924870.-	chr14	101924870	101924871	-	0	NA	Intergenic	CpG	-97143	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr16.49892642.+	chr16	49892642	49892643	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-812	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr2.109409283.-	chr2	109409283	109409284	-	0	NA	"intron (NM_144978, intron 4 of 14)"	AluSc8|SINE|Alu	-6064	NM_144978	165055	Hs.731709	NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
chrX.68956143.-	chrX	68956143	68956144	-	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSp|SINE|Alu	-120232	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr22.38530989.+	chr22	38530989	38530990	+	0	NA	"intron (NM_001004426, intron 6 of 15)"	"intron (NM_001004426, intron 6 of 15)"	-24313	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr3.21384768.-	chr3	21384768	21384769	-	0	NA	Intergenic	AluY|SINE|Alu	62450	NR_002311	391518	Hs.543226	NR_002311	ENSG00000236380	VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo
chr7.102614282.-	chr7	102614282	102614283	-	0	NA	"intron (NM_145032, intron 6 of 19)"	HERVH48-int|LTR|ERV1	-60938	NM_001031692	10234	Hs.567412	NM_001031692	ENSG00000128606	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
chr2.241780285.+	chr2	241780285	241780286	+	0	NA	Intergenic	Intergenic	-20560	NM_001244008	547	Hs.516802	NM_001244008	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
chr16.924628.+	chr16	924628	924629	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69185	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr8.141276704.+	chr8	141276704	141276705	+	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	191157	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr2.204121192.+	chr2	204121192	204121193	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18028	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr16.924579.-	chr16	924579	924580	-	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	-69136	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr12.56394848.+	chr12	56394848	56394849	+	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	3805	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr1.169305352.+	chr1	169305352	169305353	+	0	NA	"intron (NM_013330, intron 1 of 11)"	LTR12C|LTR|ERV1	31834	NM_197972	29922	Hs.706952	NM_013330	ENSG00000143156	NME7	MN23H7|nm23-H7	NME/NM23 family member 7	protein-coding
chr5.178157370.+	chr5	178157370	178157371	+	0	NA	"intron (NM_005649, intron 1 of 4)"	CpG	333	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr2.76389619.+	chr2	76389619	76389620	+	0	NA	Intergenic	AluSx3|SINE|Alu	-451508	NM_001201335	6936	Hs.710597	NM_001201334	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
chr12.127898775.-	chr12	127898775	127898776	-	0	NA	Intergenic	Intergenic	467387	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr22.18615295.+	chr22	18615295	18615296	+	0	NA	TTS (NM_001193414)	TTS (NM_001193414)	-17463	NM_017414	11274	Hs.38260	NM_017414	ENSG00000184979	USP18	ISG43|UBP43	ubiquitin specific peptidase 18	protein-coding
chr13.21644861.-	chr13	21644861	21644862	-	0	NA	Intergenic	AluSx|SINE|Alu	9139	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr22.18251664.+	chr22	18251664	18251665	+	0	NA	"intron (NM_001244567, intron 1 of 5)"	AluSx1|SINE|Alu	-4639	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	miscRNA
chr8.11455222.+	chr8	11455222	11455223	+	0	NA	Intergenic	Intergenic	21178	NR_040035	83655	Hs.742430	NR_040035	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	miscRNA
chrX.53111563.-	chrX	53111563	53111564	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-21	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr9.10786967.+	chr9	10786967	10786968	+	0	NA	Intergenic	AluYc3|SINE|Alu	-174244	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr6.101846870.-	chr6	101846870	101846871	-	0	NA	promoter-TSS (NM_175768)	promoter-TSS (NM_175768)	-9	NM_021956	2898	Hs.98262	NM_001166247	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	"glutamate receptor, ionotropic, kainate 2"	protein-coding
chr2.3190724.-	chr2	3190724	3190725	-	0	NA	Intergenic	Intergenic	-190929	NM_003310	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
chr8.105601879.-	chr8	105601879	105601880	-	0	NA	promoter-TSS (NM_013437)	promoter-TSS (NM_013437)	627	NM_001135703	29967	Hs.715867	NM_001135703	ENSG00000147650	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
chr2.236999655.-	chr2	236999655	236999656	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-76997	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr10.30847995.+	chr10	30847995	30847996	+	0	NA	Intergenic	AluSp|SINE|Alu	70652	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
chr7.139162658.-	chr7	139162658	139162659	-	0	NA	"intron (NM_198508, intron 3 of 4)"	AluYk11|SINE|Alu	-5799	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	"killer cell lectin-like receptor subfamily G, member 2"	protein-coding
chr19.42242078.-	chr19	42242078	42242079	-	0	NA	Intergenic	AluY|SINE|Alu	17320	NM_002483	4680	Hs.466814	NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)	protein-coding
chrX.40029649.-	chrX	40029649	40029650	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6933	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr20.17896823.-	chr20	17896823	17896824	-	0	NA	Intergenic	AluSz6|SINE|Alu	-46766	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	"small nucleolar RNA, C/D box 17"	snoRNA
chr6.35356256.-	chr6	35356256	35356257	-	0	NA	"intron (NM_001171819, intron 2 of 6)"	AluSz6|SINE|Alu	-45921	NM_177435	5467	Hs.696032	NM_001171818	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator-activated receptor delta	protein-coding
chr7.100044645.+	chr7	100044645	100044646	+	0	NA	Intergenic	AluY|SINE|Alu	-10551	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr10.4887148.-	chr10	4887148	4887149	-	0	NA	"intron (NM_001040177, intron 8 of 9)"	LTR12C|LTR|ERV1	-18779	NM_001040177	83592	Hs.657944	NM_001040177	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	"aldo-keto reductase family 1, member E2"	protein-coding
chr7.2443651.-	chr7	2443651	2443652	-	0	NA	"intron (NM_018641, intron 1 of 1)"	CpG	-456	NM_018641	55501	Hs.213088	NM_001243794	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate (chondroitin 4) sulfotransferase 12	protein-coding
chr12.124131698.-	chr12	124131698	124131699	-	0	NA	"intron (NM_001271868, intron 3 of 11)"	AluY|SINE|Alu	13375	NM_001414	1967	Hs.741273	NM_001414	ENSG00000111361	EIF2B1	EIF2B|EIF2BA	"eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa"	protein-coding
chr7.69745546.-	chr7	69745546	69745547	-	0	NA	"intron (NM_015570, intron 4 of 18)"	AluSc|SINE|Alu	-681640	NM_015570	26053	Hs.712991	NM_001127231	ENSG00000158321	AUTS2	FBRSL2	autism susceptibility candidate 2	protein-coding
chr20.46019538.+	chr20	46019538	46019539	+	0	NA	Intergenic	AluY|SINE|Alu	-34064	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr8.118789940.-	chr8	118789940	118789941	-	0	NA	Intergenic	SVA_B|Other|Other	-256975	NM_080651	90390	Hs.492612	NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
chr14.23706376.+	chr14	23706376	23706377	+	0	NA	Intergenic	AluSz|SINE|Alu	48933	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr13.46489288.-	chr13	46489288	46489289	-	0	NA	Intergenic	MER52D|LTR|ERV1	63442	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr19.33346356.-	chr19	33346356	33346357	-	0	NA	"intron (NM_001243036, intron 9 of 12)"	AluY|SINE|Alu	-14327	NM_001243036	11136	Hs.743345	NM_001126335	ENSG00000021488	SLC7A9	BAT1|CSNU3	"solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9"	protein-coding
chr11.118214120.+	chr11	118214120	118214121	+	0	NA	promoter-TSS (NM_000732)	promoter-TSS (NM_000732)	-661	NM_000732	915	Hs.504048	NM_000732	ENSG00000167286	CD3D	CD3-DELTA|T3D	"CD3d molecule, delta (CD3-TCR complex)"	protein-coding
chr20.29640159.-	chr20	29640159	29640160	-	0	NA	Intergenic	SVA_D|Other|Other	2021	NR_045115	140678	Hs.653099	NR_045115		MLLT10P1	MLLT10L|bA348I14.3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1"	pseudo
chr21.47403582.-	chr21	47403582	47403583	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1919	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr11.57267111.-	chr11	57267111	57267112	-	0	NA	"intron (NM_003627, intron 5 of 14)"	CpG	-15247	NM_001198810	8501	Hs.735724	NM_001198810	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	"solute carrier family 43, member 1"	protein-coding
chr6.169648544.+	chr6	169648544	169648545	+	0	NA	"exon (NM_003247, exon 4 of 23)"	"exon (NM_003247, exon 4 of 23)"	5593	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
chr20.31070753.+	chr20	31070753	31070754	+	0	NA	"intron (NM_001256798, intron 4 of 10)"	CpG	632	NM_080616	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr5.92346240.+	chr5	92346240	92346241	+	0	NA	Intergenic	AluSq2|SINE|Alu	560259	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr22.22259599.-	chr22	22259599	22259600	-	0	NA	Intergenic	AluSq2|SINE|Alu	37629	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr22.38336406.+	chr22	38336406	38336407	+	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	13248	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr7.2501953.+	chr7	2501953	2501954	+	0	NA	Intergenic	AluY|SINE|Alu	-50210	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr10.126303849.+	chr10	126303849	126303850	+	0	NA	Intergenic	CpG	129081	NM_014661	9679	Hs.129195	NM_014661	ENSG00000189319	FAM53B	KIAA0140|RP11-12J10.2|bA12J10.2	"family with sequence similarity 53, member B"	protein-coding
chr7.150812714.+	chr7	150812714	150812715	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28888	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr8.43274654.-	chr8	43274654	43274655	-	0	NA	Intergenic	SVA_D|Other|Other	-127069	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr8.141276692.-	chr8	141276692	141276693	-	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	-191169	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr2.19132830.+	chr2	19132830	19132831	+	0	NA	Intergenic	AluYk4|SINE|Alu	-361984	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr2.242599370.+	chr2	242599370	242599371	+	0	NA	"intron (NM_178326, intron 7 of 12)"	AluSg|SINE|Alu	22343	NM_178326	23192	Hs.283610	NM_013325	ENSG00000168397	ATG4B	APG4B|AUTL1	"autophagy related 4B, cysteine peptidase"	protein-coding
chr9.38646485.+	chr9	38646485	38646486	+	0	NA	Intergenic	AluY|SINE|Alu	25400	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr15.66993606.-	chr15	66993606	66993607	-	0	NA	Intergenic	CpG	1068	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr8.130306081.-	chr8	130306081	130306082	-	0	NA	Intergenic	AluY|SINE|Alu	52595	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LOC728724	-	hCG1814486	miscRNA
chr8.141276706.-	chr8	141276706	141276707	-	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	-191155	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr22.49547464.-	chr22	49547464	49547465	-	0	NA	Intergenic	Intergenic	-284882	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chrX.103014802.-	chrX	103014802	103014803	-	0	NA	Intergenic	AluY|SINE|Alu	16637	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr12.32200094.+	chr12	32200094	32200095	+	0	NA	Intergenic	AluSz|SINE|Alu	-53292	NR_046944	100873778		NR_046944		RNU6-78	-	"RNA, U6 small nuclear 78"	snRNA
chr1.158012592.+	chr1	158012592	158012593	+	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	49529	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr12.111714720.-	chr12	111714720	111714721	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92205	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr16.89740563.-	chr16	89740563	89740564	-	0	NA	Intergenic	Intergenic	12513	NM_001098533	8558	Hs.699177	NM_001098533	ENSG00000185324	CDK10	PISSLRE	cyclin-dependent kinase 10	protein-coding
chr7.157261540.+	chr7	157261540	157261541	+	0	NA	Intergenic	Intergenic	105574	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr3.109028733.+	chr3	109028733	109028734	+	0	NA	"intron (NM_138815, intron 3 of 8)"	AluSx|SINE|Alu	6631	NM_138815	151871	Hs.351113	NM_138815	ENSG00000163530	DPPA2	CT100|ECAT15-2|PESCRG1	developmental pluripotency associated 2	protein-coding
chrY.9930626.-	chrY	9930626	9930627	-	0	NA	Intergenic	CpG	-182219	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr10.67803947.+	chr10	67803947	67803948	+	0	NA	"intron (NM_013266, intron 15 of 17)"	AluSx|SINE|Alu	-881845	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
chr2.128145099.+	chr2	128145099	128145100	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-30897	NM_000312	5624	Hs.224698	NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C (inactivator of coagulation factors Va and VIIIa)	protein-coding
chr7.3124635.+	chr7	3124635	3124636	+	0	NA	Intergenic	AluSg7|SINE|Alu	-41126	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr1.113336833.+	chr1	113336833	113336834	+	0	NA	Intergenic	MER70B|LTR|ERVL	73644	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr16.1228099.+	chr16	1228099	1228100	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24858	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr8.142719267.+	chr8	142719267	142719268	+	0	NA	Intergenic	MIRc|SINE|MIR	-201937	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr20.44717609.+	chr20	44717609	44717610	+	0	NA	"intron (NM_020967, intron 1 of 7)"	MER113A|DNA|hAT-Charlie	971	NM_020967	57727	Hs.654991	NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
chr2.101958953.+	chr2	101958953	101958954	+	0	NA	Intergenic	Intergenic	33041	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	miscRNA
chr16.3733113.-	chr16	3733113	3733114	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30173	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr3.128194227.-	chr3	128194227	128194228	-	0	NA	Intergenic	Intergenic	8136	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr16.443684.-	chr16	443684	443685	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3508	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr1.228745585.+	chr1	228745585	228745586	+	0	NA	Intergenic	CpG	-34809	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr5.693739.+	chr5	693739	693740	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-229	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr16.46387469.+	chr16	46387469	46387470	+	0	NA	Intergenic	HSATII|Satellite|Satellite	215540	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr10.324391.-	chr10	324391	324392	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98457	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr19.50670102.+	chr19	50670102	50670103	+	0	NA	Intergenic	AluSg|SINE|Alu	-3564	NM_152358	126123	Hs.414175	NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
chr22.46659082.+	chr22	46659082	46659083	+	0	NA	"exon (NM_006071, exon 1 of 1)"	"exon (NM_006071, exon 1 of 1)"	137	NM_006071	10343	Hs.241383	NM_006071	ENSG00000130943	PKDREJ	-	"polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin)"	protein-coding
chr5.87348570.+	chr5	87348570	87348571	+	0	NA	Intergenic	L1PA2|LINE|L1	216095	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr1.110881077.-	chr1	110881077	110881078	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-716	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr16.70148611.+	chr16	70148611	70148612	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1082	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr2.129491267.+	chr2	129491267	129491268	+	0	NA	Intergenic	Intergenic	-415096	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr5.171395336.-	chr5	171395336	171395337	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38541	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr6.88932880.+	chr6	88932880	88932881	+	0	NA	Intergenic	AluY|SINE|Alu	-57113	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chr5.1059439.-	chr5	1059439	1059440	-	0	NA	"intron (NM_006598, intron 21 of 23)"	"intron (NM_006598, intron 21 of 23)"	-3650	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chrX.69654662.-	chrX	69654662	69654663	-	0	NA	Intergenic	Intergenic	10043	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr7.155001889.+	chr7	155001889	155001890	+	0	NA	Intergenic	Intergenic	-87597	NM_198336	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr3.49047728.-	chr3	49047728	49047729	-	0	NA	"intron (NM_018031, intron 1 of 5)"	AluY|SINE|Alu	-3091	NM_018031	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
chr3.164852022.-	chr3	164852022	164852023	-	0	NA	Intergenic	AluY|SINE|Alu	55739	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr7.95178745.-	chr7	95178745	95178746	-	0	NA	Intergenic	AluY|SINE|Alu	-47180	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr7.45750448.+	chr7	45750448	45750449	+	0	NA	"intron (NM_021116, intron 19 of 19)"	"intron (NM_021116, intron 19 of 19)"	58169	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chr8.38219036.-	chr8	38219036	38219037	-	0	NA	"intron (NM_017778, intron 1 of 9)"	AluY|SINE|Alu	-20754	NM_023034	54904	Hs.608111	NM_017778	ENSG00000147548	WHSC1L1	NSD3|pp14328	Wolf-Hirschhorn syndrome candidate 1-like 1	protein-coding
chr3.164119707.-	chr3	164119707	164119708	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676576	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr19.18057786.-	chr19	18057786	18057787	-	0	NA	Intergenic	AluSx|SINE|Alu	4325	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr2.190692842.-	chr2	190692842	190692843	-	0	NA	"intron (NM_001128143, intron 5 of 11)"	AluY|SINE|Alu	43745	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr2.80427823.+	chr2	80427823	80427824	+	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluSx1|SINE|Alu	103664	NM_178839	347730	Hs.591580	NM_178839	ENSG00000162951	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
chr22.23864022.-	chr22	23864022	23864023	-	0	NA	Intergenic	CpG	-58473	NM_020070	3543	Hs.348935	NM_020070	ENSG00000128322	IGLL1	14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2	immunoglobulin lambda-like polypeptide 1	protein-coding
chr17.48046051.-	chr17	48046051	48046052	-	0	NA	promoter-TSS (NM_138281)	promoter-TSS (NM_138281)	511	NM_138281	1748	Hs.591167	NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
chr12.38493586.+	chr12	38493586	38493587	+	0	NA	Intergenic	Intergenic	-216971	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr10.134034466.+	chr10	134034466	134034467	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34052	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr1.40237092.-	chr1	40237092	40237093	-	0	NA	promoter-TSS (NM_022120)	promoter-TSS (NM_022120)	72	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	SCOTT	3-oxoacid CoA transferase 2	protein-coding
chr18.71338742.+	chr18	71338742	71338743	+	0	NA	Intergenic	AluY|SINE|Alu	346566	NR_038340	100505817	Hs.197042	NR_038340	ENSG00000261780	LOC100505817	-	uncharacterized LOC100505817	miscRNA
chr7.5703239.+	chr7	5703239	5703240	+	0	NA	"intron (NR_046834, intron 2 of 2)"	AluY|SINE|Alu	16853	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	miscRNA
chr2.90482956.-	chr2	90482956	90482957	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1365019	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr6.33811446.-	chr6	33811446	33811447	-	0	NA	Intergenic	LTR33|LTR|ERVL	39653	NM_002418	4295	Hs.2813	NM_001040109	ENSG00000096395	MLN	-	motilin	protein-coding
chr6.168395051.+	chr6	168395051	168395052	+	0	NA	Intergenic	AluSx|SINE|Alu	-17432	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr18.33543820.-	chr18	33543820	33543821	-	0	NA	Intergenic	AluY|SINE|Alu	8768	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr22.51001310.+	chr22	51001310	51001311	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	18	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr12.75694202.-	chr12	75694202	75694203	-	0	NA	"intron (NM_032606, intron 9 of 17)"	AluY|SINE|Alu	-29634	NM_032606	84698	Hs.733835	NM_032606	ENSG00000180881	CAPS2	-	calcyphosine 2	protein-coding
chr12.57177798.+	chr12	57177798	57177799	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20690	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr16.67948377.-	chr16	67948377	67948378	-	0	NA	"intron (NM_006742, intron 2 of 2)"	AluSx|SINE|Alu	-17401	NM_001907	1506	Hs.654546	NM_001907		CTRL	CTRL1	chymotrypsin-like	protein-coding
chrX.42145001.-	chrX	42145001	42145002	-	0	NA	Intergenic	SVA_D|Other|Other	362714	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr8.41583300.-	chr8	41583300	41583301	-	0	NA	"exon (NM_000037, exon 6 of 43)"	"exon (NM_000037, exon 6 of 43)"	60496	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr11.33890426.+	chr11	33890426	33890427	+	0	NA	"intron (NM_001142315, intron 2 of 3)"	CpG	945	NM_001142316	4005	Hs.34560	NM_001142315	ENSG00000135363	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2 (rhombotin-like 1)	protein-coding
chr15.45389637.-	chr15	45389637	45389638	-	0	NA	"intron (NM_014080, intron 28 of 33)"	"intron (NM_014080, intron 28 of 33)"	-16722	NM_014080	50506	Hs.71377	NM_014080	ENSG00000140279	DUOX2	LNOX2|NOXEF2|P138-TOX|TDH6|THOX2	dual oxidase 2	protein-coding
chr14.103544211.+	chr14	103544211	103544212	+	0	NA	Intergenic	AluY|SINE|Alu	-20469	NM_006035	9578	Hs.654634	NM_006035	ENSG00000198752	CDC42BPB	MRCKB	CDC42 binding protein kinase beta (DMPK-like)	protein-coding
chr2.43253948.+	chr2	43253948	43253949	+	0	NA	Intergenic	Intergenic	199797	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr11.47284110.-	chr11	47284110	47284111	-	0	NA	"intron (NM_001130102, intron 6 of 8)"	AluSz|SINE|Alu	-4642	NM_005693	10062	Hs.438863	NM_001130101	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	"nuclear receptor subfamily 1, group H, member 3"	protein-coding
chr7.158790516.-	chr7	158790516	158790517	-	0	NA	Intergenic	Intergenic	10529	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr2.90481152.-	chr2	90481152	90481153	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-1366823	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr17.73749850.+	chr17	73749850	73749851	+	0	NA	"exon (NM_000213, exon 33 of 40)"	"exon (NM_000213, exon 33 of 40)"	11430	NM_000154	2584	Hs.407966	NM_000154	ENSG00000108479	GALK1	GALK|GK1	galactokinase 1	protein-coding
chr4.185655152.-	chr4	185655152	185655153	-	0	NA	"intron (NM_024629, intron 1 of 12)"	CpG	-134	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chrM.872.-	chrM	872	873	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.65774776.+	chr17	65774776	65774777	+	0	NA	Intergenic	AluSx|SINE|Alu	37990	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr19.7198477.-	chr19	7198477	7198478	-	0	NA	"intron (NM_000208, intron 2 of 21)"	CpG	-95534	NM_001079817	3643	Hs.465744	NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
chr3.46792404.-	chr3	46792404	46792405	-	0	NA	Intergenic	CpG	6159	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr2.183551388.-	chr2	183551388	183551389	-	0	NA	Intergenic	L1PA5|LINE|L1	29380	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr6.127845943.-	chr6	127845943	127845944	-	0	NA	Intergenic	AluY|SINE|Alu	5443	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
chr10.35223733.+	chr10	35223733	35223734	+	0	NA	Intergenic	AluSx4|SINE|Alu	-119480	NM_001184787	56288	Hs.131489	NM_001184785	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 partitioning defective 3 homolog (C. elegans)	protein-coding
chr13.38443634.+	chr13	38443634	38443635	+	0	NA	"intron (NM_001135955, intron 1 of 11)"	"intron (NM_001135955, intron 1 of 11)"	305	NM_001135957	7223	Hs.262960	NM_001135955	ENSG00000133107	TRPC4	HTRP-4|HTRP4|TRP4	"transient receptor potential cation channel, subfamily C, member 4"	protein-coding
chr2.175518186.-	chr2	175518186	175518187	-	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	18879	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr19.4866049.-	chr19	4866049	4866050	-	0	NA	"intron (NM_005817, intron 1 of 7)"	AluSx1|SINE|Alu	-1731	NM_001164194	10226	Hs.140452	NM_001164189	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
chr2.47168540.+	chr2	47168540	47168541	+	0	NA	"5' UTR (NM_020458, exon 1 of 20)"	"5' UTR (NM_020458, exon 1 of 20)"	227	NM_020458	57217	Hs.736871	NM_020458	ENSG00000068724	TTC7A	TTC7	tetratricopeptide repeat domain 7A	protein-coding
chr6.108315249.-	chr6	108315249	108315250	-	0	NA	Intergenic	AluSz|SINE|Alu	35767	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr7.100044657.+	chr7	100044657	100044658	+	0	NA	Intergenic	AluY|SINE|Alu	-10563	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr17.18785228.-	chr17	18785228	18785229	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16446	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr11.64120558.-	chr11	64120558	64120559	-	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	6067	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr2.239758077.+	chr2	239758077	239758078	+	0	NA	"intron (NM_001271893, intron 1 of 1)"	CpG-16158	1404	NM_001271893	117581	Hs.422585	NM_001271893	ENSG00000233608	TWIST2	DERMO1|FFDD3|SETLSS|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding
chr1.97029514.-	chr1	97029514	97029515	-	0	NA	Intergenic	Intergenic	157661	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr21.46737145.-	chr21	46737145	46737146	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29178	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr16.70190513.+	chr16	70190513	70190514	+	0	NA	"exon (NM_017990, exon 19 of 19)"	"exon (NM_017990, exon 19 of 19)"	-17415	NM_173619	283971	Hs.556045	NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	"C-type lectin domain family 18, member C"	protein-coding
chrX.135849450.-	chrX	135849450	135849451	-	0	NA	"intron (NM_004840, intron 2 of 21)"	CpG	-14053	NM_004840	9459	Hs.522795	NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding
chr17.56004262.+	chr17	56004262	56004263	+	0	NA	"intron (NM_001271875, intron 1 of 10)"	"intron (NM_001271875, intron 1 of 10)"	-23512	NR_073495	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
chr11.33037317.-	chr11	33037317	33037318	-	0	NA	promoter-TSS (NM_001077242)	promoter-TSS (NM_001077242)	93	NM_001077242	91614	Hs.280990	NM_001077242	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
chr9.16766076.+	chr9	16766076	16766077	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	104710	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr15.41687826.-	chr15	41687826	41687827	-	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	-6832	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr17.7736932.+	chr17	7736932	7736933	+	0	NA	"3' UTR (NM_020877, exon 85 of 85)"	"3' UTR (NM_020877, exon 85 of 85)"	-6303	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine (K)-specific demethylase 6B	protein-coding
chr2.132978667.-	chr2	132978667	132978668	-	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	-35986	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr3.3168582.+	chr3	3168582	3168583	+	0	NA	promoter-TSS (NM_182916)	promoter-TSS (NM_182916)	-18	NM_182916	51095	Hs.732725	NM_016000	ENSG00000072756	TRNT1	CCA1|MtCCA	"tRNA nucleotidyl transferase, CCA-adding, 1"	protein-coding
chr3.112280189.+	chr3	112280189	112280190	+	0	NA	promoter-TSS (NM_017945)	promoter-TSS (NM_017945)	296	NM_022488	64422	Hs.477126	NM_022488		ATG3	APG3|APG3-LIKE|APG3L|PC3-96	autophagy related 3	protein-coding
chr10.35336414.+	chr10	35336414	35336415	+	0	NA	"intron (NM_001198778, intron 6 of 20)"	AluSc8|SINE|Alu	26844	NM_001198779	8453	Hs.82919	NM_001198777	ENSG00000108094	CUL2	-	cullin 2	protein-coding
chr1.151966631.-	chr1	151966631	151966632	-	0	NA	promoter-TSS (NM_002966)	promoter-TSS (NM_002966)	-83	NM_002966	6281	Hs.143873	NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
chr19.6993762.+	chr19	6993762	6993763	+	0	NA	Intergenic	AluSz|SINE|Alu	-2905	NR_024075	326342	Hs.688043	NR_024075	ENSG00000268758	EMR4P	EMR4|FIRE|GPR127|PGR16	"egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene"	pseudo
chr6.108280102.-	chr6	108280102	108280103	-	0	NA	promoter-TSS (NM_007214)	promoter-TSS (NM_007214)	620	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr12.133328238.+	chr12	133328238	133328239	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10213	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr6.39693127.-	chr6	39693127	39693128	-	0	NA	promoter-TSS (NM_145027)	promoter-TSS (NM_145027)	-54	NM_145027	221458	Hs.588202	NM_145027	ENSG00000164627	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
chrX.67718776.+	chrX	67718776	67718777	+	0	NA	"5' UTR (NM_001195214, exon 1 of 6)"	"5' UTR (NM_001195214, exon 1 of 6)"	152	NM_173834	286451	Hs.82719	NM_001195214	ENSG00000181704	YIPF6	FinGER6	"Yip1 domain family, member 6"	protein-coding
chr7.63552250.+	chr7	63552250	63552251	+	0	NA	Intergenic	AluSz6|SINE|Alu	46429	NM_001159522	442319	Hs.640774	NM_001159522	ENSG00000257482	ZNF727	-	zinc finger protein 727	protein-coding
chrX.100277466.+	chrX	100277466	100277467	+	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	29639	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr11.62418837.-	chr11	62418837	62418838	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-1937	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr9.11197028.-	chr9	11197028	11197029	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584305	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr15.37172554.-	chr15	37172554	37172555	-	0	NA	"intron (NR_024264, intron 3 of 6)"	CpG	-6180	NR_024264	145845	Hs.302693	NR_024264		LOC145845	-	uncharacterized LOC145845	miscRNA
chr16.924596.+	chr16	924596	924597	+	0	NA	"intron (NR_033646, intron 8 of 12)"	CpG	69153	NM_001013638	388199	Hs.528461	NM_001013638	ENSG00000167945	PRR25	gs64	proline rich 25	protein-coding
chr8.97222675.-	chr8	97222675	97222676	-	0	NA	Intergenic	AluY|SINE|Alu	-25187	NM_001199975	7381	Hs.131255	NM_001199975	ENSG00000156467	UQCRB	QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding
chr1.220909502.+	chr1	220909502	220909503	+	0	NA	Intergenic	AluSc|SINE|Alu	-12174	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr12.42538145.-	chr12	42538145	42538146	-	0	NA	"intron (NM_173601, intron 1 of 7)"	CpG	-528	NM_001099650	283464	Hs.259347	NM_001099650	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
chr21.46737136.-	chr21	46737136	46737137	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29169	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr16.22675570.-	chr16	22675570	22675571	-	0	NA	Intergenic	AluJr|SINE|Alu	54033	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	miscRNA
chr5.103114742.-	chr5	103114742	103114743	-	0	NA	Intergenic	LTR12D|LTR|ERV1	216252	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr17.42869171.-	chr17	42869171	42869172	-	0	NA	Intergenic	AluY|SINE|Alu	-32603	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr8.99077063.+	chr8	99077063	99077064	+	0	NA	"intron (NM_001170806, intron 1 of 1)"	CpG	313	NM_001170806	203111	Hs.171455	NM_001170806	ENSG00000177459	C8orf47	-	chromosome 8 open reading frame 47	protein-coding
chr11.2213915.-	chr11	2213915	2213916	-	0	NA	Intergenic	Intergenic	-19622	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chrX.67548056.+	chrX	67548056	67548057	+	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	105243	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr19.5148564.-	chr19	5148564	5148565	-	0	NA	"intron (NM_015015, intron 21 of 22)"	"intron (NM_015015, intron 21 of 22)"	-179440	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr5.112263713.+	chr5	112263713	112263714	+	0	NA	Intergenic	AluY|SINE|Alu	-5682	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr16.89608207.+	chr16	89608207	89608208	+	0	NA	"intron (NM_003119, intron 9 of 16)"	"intron (NM_003119, intron 9 of 16)"	-18858	NM_001243131	6137	Hs.410817	NM_000977		RPL13	BBC1|D16S444E|D16S44E|L13	ribosomal protein L13	protein-coding
chr7.158072674.+	chr7	158072674	158072675	+	0	NA	"intron (NM_130842, intron 2 of 21)"	"intron (NM_130842, intron 2 of 21)"	252831	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr7.23509158.+	chr7	23509158	23509159	+	0	NA	"intron (NM_006547, intron 1 of 14)"	CpG	837	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
chr10.64884904.-	chr10	64884904	64884905	-	0	NA	Intergenic	AluY|SINE|Alu	8103	NM_030759	29982	Hs.449628	NM_030759	ENSG00000148572	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
chr11.64694548.-	chr11	64694548	64694549	-	0	NA	"intron (NM_006244, intron 3 of 13)"	"intron (NM_006244, intron 3 of 13)"	-2405	NM_006244	5526	Hs.75199	NM_006244	ENSG00000068971	PPP2R5B	B56B|PR61B	"protein phosphatase 2, regulatory subunit B', beta"	protein-coding
chr2.170687914.+	chr2	170687914	170687915	+	0	NA	"intron (NM_172070, intron 1 of 38)"	AluSp|SINE|Alu	3896	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
chr5.78890166.-	chr5	78890166	78890167	-	0	NA	Intergenic	AluY|SINE|Alu	18077	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr15.41687859.+	chr15	41687859	41687860	+	0	NA	"intron (NR_045620, intron 2 of 5)"	AluY|SINE|Alu	6799	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr17.79427784.-	chr17	79427784	79427785	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9570	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr10.118500960.-	chr10	118500960	118500961	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1125	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr10.324341.-	chr10	324341	324342	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98407	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr5.177027366.+	chr5	177027366	177027367	+	0	NA	"intron (NM_007255, intron 1 of 5)"	CpG	247	NM_007255	11285	Hs.455109	NM_007255	ENSG00000027847	B4GALT7	XGALT1|XGPT1	"xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7"	protein-coding
chr2.173941052.+	chr2	173941052	173941053	+	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	487	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr7.155246435.+	chr7	155246435	155246436	+	0	NA	Intergenic	CpG	-4389	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr2.152303668.-	chr2	152303668	152303669	-	0	NA	"intron (NM_001177663, intron 20 of 34)"	AluY|SINE|Alu	-37064	NM_001177665	55183	Hs.735592	NM_001177663	ENSG00000080345	RIF1	-	RAP1 interacting factor homolog (yeast)	protein-coding
chr6.16831782.-	chr6	16831782	16831783	-	0	NA	Intergenic	AluY|SINE|Alu	70061	NM_000332	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
chr18.41408407.-	chr18	41408407	41408408	-	0	NA	Intergenic	AluSx3|SINE|Alu	550792	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr6.157734039.+	chr6	157734039	157734040	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11214	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr8.26241048.-	chr8	26241048	26241049	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-525	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr3.128194220.+	chr3	128194220	128194221	+	0	NA	Intergenic	Intergenic	-8129	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr12.49163945.-	chr12	49163945	49163946	-	0	NA	"intron (NM_020983, intron 19 of 20)"	AluSx|SINE|Alu	-1875	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	miscRNA
chr2.101245802.-	chr2	101245802	101245803	-	0	NA	Intergenic	Intergenic	-66384	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr22.32868757.+	chr22	32868757	32868758	+	0	NA	Intergenic	AluY|SINE|Alu	-1950	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr17.73615801.+	chr17	73615801	73615802	+	0	NA	"non-coding (NR_003587, exon 44 of 61)"	"non-coding (NR_003587, exon 44 of 61)"	-13713	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr1.3546382.-	chr1	3546382	3546383	-	0	NA	TTS (NM_017818)	TTS (NM_017818)	-4826	NM_182752	127262	Hs.20529	NM_182752	ENSG00000158109	TPRG1L	FAM79A|RP11-46F15.3|h-mover|mover	tumor protein p63 regulated 1-like	protein-coding
chr11.32691884.-	chr11	32691884	32691885	-	0	NA	"intron (NM_001008391, intron 9 of 17)"	AluY|SINE|Alu	-86571	NM_006360	10480	Hs.502244	NM_006360		EIF3M	B5|PCID1|TANGO7|hfl-B5	"eukaryotic translation initiation factor 3, subunit M"	protein-coding
chr13.71053454.+	chr13	71053454	71053455	+	0	NA	Intergenic	Intergenic	-370829	NM_020866	57626	Hs.508201	NM_020866	ENSG00000150361	KLHL1	MRP2	kelch-like family member 1	protein-coding
chr20.14431834.-	chr20	14431834	14431835	-	0	NA	"intron (NM_080676, intron 3 of 16)"	AluSx|SINE|Alu	113521	NM_013281	23767	Hs.41296	NM_013281	ENSG00000125848	FLRT3	-	fibronectin leucine rich transmembrane protein 3	protein-coding
chr1.43612794.+	chr1	43612794	43612795	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-800	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chrX.15353439.-	chrX	15353439	15353440	-	0	NA	"intron (NR_033835, intron 1 of 5)"	CpG	-237	NR_033835	5277	Hs.137154	NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|PIG-A	"phosphatidylinositol glycan anchor biosynthesis, class A"	protein-coding
chr5.22207057.+	chr5	22207057	22207058	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64596	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr17.35342242.-	chr17	35342242	35342243	-	0	NA	"intron (NM_012138, intron 4 of 11)"	AluSx|SINE|Alu	-36067	NM_012138	26574	Hs.195740	NM_012138	ENSG00000108270	AATF	CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
chr3.124469127.-	chr3	124469127	124469128	-	0	NA	Intergenic	SVA_D|Other|Other	-19914	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr11.133837505.+	chr11	133837505	133837506	+	0	NA	Intergenic	Intergenic	-10625	NM_014987	22997	Hs.440476	XM_001720450	ENSG00000080854	IGSF9B	-	"immunoglobulin superfamily, member 9B"	protein-coding
chrX.152916311.+	chrX	152916311	152916312	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8414	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr17.66332157.-	chr17	66332157	66332158	-	0	NA	"intron (NM_001267727, intron 2 of 11)"	AluSx1|SINE|Alu	-44521	NM_001267727	22901	Hs.437249	NM_001267727		ARSG	-	arylsulfatase G	protein-coding
chr15.66993602.-	chr15	66993602	66993603	-	0	NA	Intergenic	CpG	1072	NR_027654	4091	Hs.153863	NM_001142861	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
chr6.159416818.-	chr6	159416818	159416819	-	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	-4380	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr10.125611152.+	chr10	125611152	125611153	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40348	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr2.183551450.-	chr2	183551450	183551451	-	0	NA	Intergenic	L1PA5|LINE|L1	29318	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr16.75299548.-	chr16	75299548	75299549	-	0	NA	"intron (NM_001170714, intron 1 of 7)"	CpG	-298	NM_001170720	9564	Hs.479747	NM_001170714	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
chr12.64784322.-	chr12	64784322	64784323	-	0	NA	promoter-TSS (NM_001099676)	promoter-TSS (NM_001099676)	-23	NM_001170633	115749	Hs.535190	NM_001099676	ENSG00000185306	C12orf56	-	chromosome 12 open reading frame 56	protein-coding
chr3.186441576.+	chr3	186441576	186441577	+	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	6478	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr3.189635265.-	chr3	189635265	189635266	-	0	NA	Intergenic	AluSz6|SINE|Alu	-87554	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	miscRNA
chr16.17617264.-	chr16	17617264	17617265	-	0	NA	Intergenic	AluSz|SINE|Alu	52526	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr1.115078549.-	chr1	115078549	115078550	-	0	NA	Intergenic	Intergenic	24768	NM_033020	51592	Hs.26837	NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
chr10.12344451.-	chr10	12344451	12344452	-	0	NA	Intergenic	AluSc8|SINE|Alu	47132	NM_020397	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr16.4835200.+	chr16	4835200	4835201	+	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	-3198	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr2.33172340.+	chr2	33172340	33172341	+	0	NA	promoter-TSS (NM_206943)	promoter-TSS (NM_206943)	-29	NM_206943	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
chr17.48631018.-	chr17	48631018	48631019	-	0	NA	"intron (NM_001258372, intron 13 of 15)"	FLAM_C|SINE|Alu	-6568	NM_001258372	64847	Hs.103147	NM_001258372	ENSG00000006282	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
chr5.2391219.-	chr5	2391219	2391220	-	0	NA	Intergenic	Intergenic	-360550	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr17.744661.+	chr17	744661	744662	+	0	NA	"intron (NM_022463, intron 1 of 7)"	CpG	22690	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr2.210525388.-	chr2	210525388	210525389	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80985	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr1.92351528.-	chr1	92351528	92351529	-	0	NA	"non-coding (NR_036634, exon 1 of 18)"	"non-coding (NR_036634, exon 1 of 18)"	-308	NM_003243	7049	Hs.735919	NM_001195683	ENSG00000069702	TGFBR3	BGCAN|betaglycan	"transforming growth factor, beta receptor III"	protein-coding
chr12.129892173.+	chr12	129892173	129892174	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496039	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr9.139778318.-	chr9	139778318	139778319	-	0	NA	Intergenic	AluSc|SINE|Alu	2647	NM_021138	7186	Hs.522506	NM_021138	ENSG00000127191	TRAF2	MGC:45012|TRAP|TRAP3	TNF receptor-associated factor 2	protein-coding
chr10.81146788.-	chr10	81146788	81146789	-	0	NA	"intron (NM_153367, intron 3 of 3)"	"intron (NM_153367, intron 3 of 3)"	-39568	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
chr12.52863589.+	chr12	52863589	52863590	+	0	NA	"exon (NM_173086, exon 7 of 9)"	"exon (NM_173086, exon 7 of 9)"	3980	NM_173086	286887	Hs.709234	NM_173086	ENSG00000170465	KRT6C	K6E|KRT6E	keratin 6C	protein-coding
chr21.47838755.+	chr21	47838755	47838756	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40107	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr7.33164241.-	chr7	33164241	33164242	-	0	NA	Intergenic	AluYf5|SINE|Alu	4911	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr5.145549254.+	chr5	145549254	145549255	+	0	NA	"intron (NM_020117, intron 4 of 31)"	AluSq2|SINE|Alu	13040	NM_020117	51520	Hs.432674	NM_020117	ENSG00000133706	LARS	HSPC192|LARS1|LEURS|LEUS|LRS|PIG44|RNTLS|hr025Cl	leucyl-tRNA synthetase	protein-coding
chr9.11197048.-	chr9	11197048	11197049	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584325	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr17.27717855.+	chr17	27717855	27717856	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-88	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr12.8830972.-	chr12	8830972	8830973	-	0	NA	Intergenic	AluSp|SINE|Alu	15539	NM_003480	8076	Hs.512842	NM_003480	ENSG00000197614	MFAP5	MAGP2|MP25	microfibrillar associated protein 5	protein-coding
chr19.42788678.-	chr19	42788678	42788679	-	0	NA	promoter-TSS (NM_015125)	promoter-TSS (NM_015125)	139	NM_015125	23152	Hs.388236	NM_015125	ENSG00000079432	CIC	-	capicua transcriptional repressor	protein-coding
chr9.2673160.+	chr9	2673160	2673161	+	0	NA	Intergenic	AluSc8|SINE|Alu	-44366	NM_133497	169522	Hs.740173	NM_133497	ENSG00000168263	KCNV2	KV11.1|Kv8.2|RCD3B	"potassium channel, subfamily V, member 2"	protein-coding
chr22.17719109.-	chr22	17719109	17719110	-	0	NA	Intergenic	AluSg|SINE|Alu	28330	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr12.124456853.-	chr12	124456853	124456854	-	0	NA	promoter-TSS (NM_152437)	promoter-TSS (NM_152437)	-310	NM_025140	80212	Hs.713131	NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
chrX.88129020.-	chrX	88129020	88129021	-	0	NA	Intergenic	AluY|SINE|Alu	-126794	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr19.46987861.-	chr19	46987861	46987862	-	0	NA	"intron (NM_001205281, intron 3 of 3)"	AluSx|SINE|Alu	-11308	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
chrX.151374872.+	chrX	151374872	151374873	+	0	NA	"intron (NM_000808, intron 7 of 9)"	"intron (NM_000808, intron 7 of 9)"	-67822	NM_001204811	100533997	Hs.18048	NM_001204811		MAGEA10-MAGEA5	CT1.5	MAGEA10-MAGEA5 readthrough	protein-coding
chr9.34070282.+	chr9	34070282	34070283	+	0	NA	Intergenic	AluSz|SINE|Alu	-21335	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr9.108210375.-	chr9	108210375	108210376	-	0	NA	promoter-TSS (NM_001145313)	promoter-TSS (NM_001145313)	-50	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr1.236687515.+	chr1	236687515	236687516	+	0	NA	"non-coding (NR_034040, exon 1 of 1)"	"non-coding (NR_034040, exon 1 of 1)"	293	NR_034040	100287902	Hs.677376	NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	miscRNA
chr21.38378489.-	chr21	38378489	38378490	-	0	NA	promoter-TSS (NM_018962)	promoter-TSS (NM_018962)	374	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	DSCR6	RIPPLY3	Down syndrome critical region gene 6	protein-coding
chr20.57767041.-	chr20	57767041	57767042	-	0	NA	"exon (NM_178457, exon 1 of 5)"	"exon (NM_178457, exon 1 of 5)"	-966	NM_178457	128611	Hs.473204	NM_178457	ENSG00000124203	ZNF831	C20orf174|dJ492J12.1	zinc finger protein 831	protein-coding
chr3.112808042.-	chr3	112808042	112808043	-	0	NA	Intergenic	AluYc|SINE|Alu	69487	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr18.37828484.+	chr18	37828484	37828485	+	0	NA	Intergenic	AluY|SINE|Alu	-496525	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	LINC00669	-	long intergenic non-protein coding RNA 669	miscRNA
chr21.33279848.+	chr21	33279848	33279849	+	0	NA	"intron (NM_014586, intron 1 of 10)"	"intron (NM_014586, intron 1 of 10)"	34220	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
chr4.129732750.+	chr4	129732750	129732751	+	0	NA	"intron (NM_199320, intron 1 of 10)"	CpG	1971	NM_024900	79960	Hs.12420	NM_024900	ENSG00000077684	PHF17	JADE1	PHD finger protein 17	protein-coding
chr1.226350802.+	chr1	226350802	226350803	+	0	NA	"intron (NM_022735, intron 3 of 7)"	"intron (NM_022735, intron 3 of 7)"	23621	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr11.32456559.+	chr11	32456559	32456560	+	0	NA	promoter-TSS (NR_023920)	promoter-TSS (NR_023920)	522	NM_024424	7490	Hs.591980	NM_000378	ENSG00000184937	WT1	AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33	Wilms tumor 1	protein-coding
chr2.235844036.+	chr2	235844036	235844037	+	0	NA	Intergenic	AluSc|SINE|Alu	-16592	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr22.31744398.-	chr22	31744398	31744399	-	0	NA	Intergenic	AluSp|SINE|Alu	2149	NM_014323	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr18.77627510.+	chr18	77627510	77627511	+	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	3842	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr13.33703576.+	chr13	33703576	33703577	+	0	NA	"exon (NM_001243466, exon 5 of 8)"	"exon (NM_001243466, exon 5 of 8)"	56640	NM_001243466	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr10.31908074.+	chr10	31908074	31908075	+	0	NA	Intergenic	Intergenic	289780	NM_001270699	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr17.48046146.-	chr17	48046146	48046147	-	0	NA	promoter-TSS (NM_138281)	promoter-TSS (NM_138281)	416	NM_138281	1748	Hs.591167	NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
chr2.74730421.+	chr2	74730421	74730422	+	0	NA	promoter-TSS (NM_001009812)	promoter-TSS (NM_001009812)	22	NM_001009812	85474	Hs.722114	NM_001009812		LBX2	-	ladybird homeobox 2	protein-coding
chr3.122786020.-	chr3	122786020	122786021	-	0	NA	"exon (NM_006810, exon 1 of 17)"	"exon (NM_006810, exon 1 of 17)"	-164	NR_028444	10954	Hs.477352	NM_006810	ENSG00000065485	PDIA5	PDIR	"protein disulfide isomerase family A, member 5"	protein-coding
chr1.32122123.+	chr1	32122123	32122124	+	0	NA	"intron (NM_001856, intron 65 of 70)"	"intron (NM_001856, intron 65 of 70)"	-11285	NR_033686	553115	Hs.470417	NR_033688	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
chrX.112142808.-	chrX	112142808	112142809	-	0	NA	Intergenic	AluY|SINE|Alu	58765	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr18.43751044.+	chr18	43751044	43751045	+	0	NA	Intergenic	AluSx|SINE|Alu	-2944	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr3.48723485.+	chr3	48723485	48723486	+	0	NA	promoter-TSS (NM_184231)	promoter-TSS (NM_184231)	-151	NM_184231	51517	Hs.655006	NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
chr7.2966807.+	chr7	2966807	2966808	+	0	NA	"intron (NM_032415, intron 13 of 24)"	"intron (NM_032415, intron 13 of 24)"	-82848	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr2.136403836.-	chr2	136403836	136403837	-	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	19131	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr19.2245543.+	chr19	2245543	2245544	+	0	NA	"exon (NM_007165, exon 5 of 9)"	"exon (NM_007165, exon 5 of 9)"	-3570	NM_000479	268	Hs.112432	NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
chr11.73486263.+	chr11	73486263	73486264	+	0	NA	Intergenic	SVA_C|Other|Other	-12654	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr19.2236031.-	chr19	2236031	2236032	-	0	NA	promoter-TSS (NM_007165)	promoter-TSS (NM_007165)	-297	NM_018049	55111	Hs.501353	NM_018049	ENSG00000104886	PLEKHJ1	GNRPX	"pleckstrin homology domain containing, family J member 1"	protein-coding
chr6.12012488.+	chr6	12012488	12012489	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-236	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr20.37093414.-	chr20	37093414	37093415	-	0	NA	Intergenic	AluSx3|SINE|Alu	8072	NM_020336	57148	Hs.598850	NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta|dJ1100H13.1	"Ral GTPase activating protein, beta subunit (non-catalytic)"	protein-coding
chr17.12456676.-	chr17	12456676	12456677	-	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	-3391	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr1.183670833.-	chr1	183670833	183670834	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48385	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr10.76620830.-	chr10	76620830	76620831	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34659	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr17.28675265.-	chr17	28675265	28675266	-	0	NA	Intergenic	AluY|SINE|Alu	14200	NM_206832	388364	Hs.371005	NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
chr3.29051424.-	chr3	29051424	29051425	-	0	NA	Intergenic	AluSc8|SINE|Alu	271379	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr12.121346476.-	chr12	121346476	121346477	-	0	NA	Intergenic	AluSp|SINE|Alu	4321	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr14.35800645.+	chr14	35800645	35800646	+	0	NA	Intergenic	AluSx|SINE|Alu	39071	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr3.37329887.+	chr3	37329887	37329888	+	0	NA	"intron (NM_002078, intron 4 of 23)"	AluSg|SINE|Alu	45205	NM_001172713	2803	Hs.344151	NM_001172713	ENSG00000144674	GOLGA4	GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
chr8.98771871.+	chr8	98771871	98771872	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15938	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chrX.137770388.-	chrX	137770388	137770389	-	0	NA	"intron (NM_001139502, intron 4 of 5)"	AluSc8|SINE|Alu	20434	NR_030229	574507		NR_030229		MIR504	MIRN504|hsa-mir-504	microRNA 504	miscRNA
chr22.21635807.-	chr22	21635807	21635808	-	0	NA	promoter-TSS (NR_024583)	promoter-TSS (NR_024583)	907	NR_024583	29797	Hs.735161	NR_024583		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin-like 8 pseudogene	pseudo
chr9.16766052.+	chr9	16766052	16766053	+	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	104734	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr19.48814084.+	chr19	48814084	48814085	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9248	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr8.57359118.-	chr8	57359118	57359119	-	0	NA	promoter-TSS (NM_006211)	promoter-TSS (NM_006211)	-164	NM_001135690	5179	Hs.339831	NM_001135690	ENSG00000181195	PENK	-	proenkephalin	protein-coding
chr16.88387051.+	chr16	88387051	88387052	+	0	NA	Intergenic	L2b|LINE|L2	-106828	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr2.10424719.-	chr2	10424719	10424720	-	0	NA	Intergenic	Intergenic	18311	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr1.218165411.-	chr1	218165411	218165412	-	0	NA	Intergenic	AluSq|SINE|Alu	-99169	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr9.139071786.+	chr9	139071786	139071787	+	0	NA	Intergenic	Intergenic	23218	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr12.118079907.+	chr12	118079907	118079908	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280300	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr11.62438098.-	chr11	62438098	62438099	-	0	NA	"intron (NM_024099, intron 1 of 6)"	AluY|SINE|Alu	1028	NM_001085372	790955	Hs.569009	NM_001085372	ENSG00000204922	C11orf83	CCDS41658.1|UNQ655	chromosome 11 open reading frame 83	protein-coding
chr4.2820276.+	chr4	2820276	2820277	+	0	NA	promoter-TSS (NM_003023)	promoter-TSS (NM_003023)	-265	NM_003023	6452	Hs.167679	NM_001122681	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
chr11.119749477.+	chr11	119749477	119749478	+	0	NA	Intergenic	AluSp|SINE|Alu	-150042	NM_203285	5818	Hs.334846	NM_002855	ENSG00000110400	PVRL1	CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
chr2.175518326.+	chr2	175518326	175518327	+	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	-19019	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr2.224724766.-	chr2	224724766	224724767	-	0	NA	Intergenic	AluSp|SINE|Alu	22447	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr9.138397738.+	chr9	138397738	138397739	+	0	NA	Intergenic	Intergenic	5261	NR_051968	51116	Hs.382044	NM_016034	ENSG00000122140	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
chr6.8388447.-	chr6	8388447	8388448	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47347	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr7.5322963.+	chr7	5322963	5322964	+	0	NA	"intron (NM_153247, intron 1 of 10)"	CpG	402	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr8.43413757.-	chr8	43413757	43413758	-	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-266172	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr9.89562392.-	chr9	89562392	89562393	-	0	NA	promoter-TSS (NM_002048)	promoter-TSS (NM_002048)	288	NM_002048	2619	Hs.65029	NM_002048	ENSG00000180447	GAS1	-	growth arrest-specific 1	protein-coding
chr13.19683427.+	chr13	19683427	19683428	+	0	NA	Intergenic	L1PA2|LINE|L1	-33695	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chr6.35496941.-	chr6	35496941	35496942	-	0	NA	Intergenic	AluSp|SINE|Alu	16294	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
chr2.242489908.+	chr2	242489908	242489909	+	0	NA	"intron (NR_033346, intron 1 of 1)"	"intron (NR_033346, intron 1 of 1)"	-8238	NM_032515	666	Hs.734656	NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
chr3.68753610.-	chr3	68753610	68753611	-	0	NA	Intergenic	AluSx3|SINE|Alu	-228151	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr8.131370952.+	chr8	131370952	131370953	+	0	NA	"intron (NM_018482, intron 2 of 29)"	CpG-26004	-62173	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	miscRNA
chr14.34667882.+	chr14	34667882	34667883	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247598	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr3.42630498.+	chr3	42630498	42630499	+	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	-1800	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr11.1884711.+	chr11	1884711	1884712	+	0	NA	"intron (NM_002339, intron 1 of 10)"	MIRb|SINE|MIR	-1684	NM_001242932	4046	Hs.56729	NM_001013253	ENSG00000130592	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
chr5.22207141.+	chr5	22207141	22207142	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64680	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr3.8721270.-	chr3	8721270	8721271	-	0	NA	Intergenic	Intergenic	27506	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr19.41641931.-	chr19	41641931	41641932	-	0	NA	Intergenic	CpG	-21578	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr8.141523829.+	chr8	141523829	141523830	+	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	1748	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr7.25058059.-	chr7	25058059	25058060	-	0	NA	Intergenic	SVA_F|Other|Other	38299	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr1.45937950.-	chr1	45937950	45937951	-	0	NA	"intron (NM_007170, intron 1 of 10)"	AluSq2|SINE|Alu	-18890	NM_007170	10420	Hs.591499	NM_007170	ENSG00000070759	TESK2	-	testis-specific kinase 2	protein-coding
chr17.47811771.+	chr17	47811771	47811772	+	0	NA	"intron (NM_030802, intron 1 of 7)"	AluYk4|SINE|Alu	-26489	NM_005827	10237	Hs.154073	NM_005827		SLC35B1	UGTREL1	"solute carrier family 35, member B1"	protein-coding
chr13.24897861.+	chr13	24897861	24897862	+	0	NA	Intergenic	Intergenic	14145	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr5.103302300.-	chr5	103302300	103302301	-	0	NA	Intergenic	LTR12C|LTR|ERV1	403810	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chr13.111280688.-	chr13	111280688	111280689	-	0	NA	"intron (NR_040103, intron 5 of 9)"	"intron (NR_040103, intron 5 of 9)"	-12757	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr7.37960974.+	chr7	37960974	37960975	+	0	NA	promoter-TSS (NM_001242948)	promoter-TSS (NM_001242948)	53	NM_001242948	54749	Hs.563491	NM_001242946	ENSG00000086289	EPDR1	EPDR|MERP-1|MERP1|UCC1	ependymin related protein 1 (zebrafish)	protein-coding
chr8.56098948.+	chr8	56098948	56098949	+	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	83931	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chrX.40019629.+	chrX	40019629	40019630	+	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluY|SINE|Alu	16953	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr17.77198173.-	chr17	77198173	77198174	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-127154	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr18.67270920.-	chr18	67270920	67270921	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202636	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr1.167599578.+	chr1	167599578	167599579	+	0	NA	"5' UTR (NM_052862, exon 1 of 7)"	"5' UTR (NM_052862, exon 1 of 7)"	104	NM_052862	92241	Hs.493867	NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
chr2.241363416.-	chr2	241363416	241363417	-	0	NA	Intergenic	Intergenic	11699	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr8.144512833.+	chr8	144512833	144512834	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-231	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr9.134449892.-	chr9	134449892	134449893	-	0	NA	Intergenic	AluSx1|SINE|Alu	43230	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr16.57570491.-	chr16	57570491	57570492	-	0	NA	promoter-TSS (NM_033212)	promoter-TSS (NM_033212)	14	NM_033212	92922	Hs.644611	NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
chr17.72203123.-	chr17	72203123	72203124	-	0	NA	"intron (NM_001035258, intron 3 of 4)"	AluY|SINE|Alu	-3328	NM_001035258	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr2.241496686.-	chr2	241496686	241496687	-	0	NA	"exon (NM_017844, exon 2 of 14)"	"exon (NM_017844, exon 2 of 14)"	-719	NM_016552	51281	Hs.656615	NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
chr16.77410046.+	chr16	77410046	77410047	+	0	NA	"intron (NM_199355, intron 3 of 22)"	AluSp|SINE|Alu	58965	NM_199355	170692	Hs.188746	NM_199355	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2	"ADAM metallopeptidase with thrombospondin type 1 motif, 18"	protein-coding
chr4.166248584.-	chr4	166248584	166248585	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	234	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr10.64575580.+	chr10	64575580	64575581	+	0	NA	"intron (NM_000399, intron 1 of 1)"	CpG	546	NM_001136179	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr3.60485406.-	chr3	60485406	60485407	-	0	NA	"intron (NM_001166243, intron 5 of 9)"	AluYc|SINE|Alu	-751727	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr4.49319000.-	chr4	49319000	49319001	-	0	NA	Intergenic	ACRO1|Satellite|acro	-330735	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chr3.82554669.-	chr3	82554669	82554670	-	0	NA	Intergenic	MER52A|LTR|ERV1	743719	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr4.88032420.+	chr4	88032420	88032421	+	0	NA	"intron (NM_001166693, intron 11 of 20)"	AluY|SINE|Alu	104267	NM_005935	4299	Hs.480190	NM_001166693	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	"AF4/FMR2 family, member 1"	protein-coding
chr17.73615832.-	chr17	73615832	73615833	-	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	13682	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr9.80898926.-	chr9	80898926	80898927	-	0	NA	Intergenic	LTR12|LTR|ERV1	13133	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr16.1228064.+	chr16	1228064	1228065	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24823	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr5.133968956.+	chr5	133968956	133968957	+	0	NA	promoter-TSS (NM_001033503)	promoter-TSS (NM_001033503)	-423	NM_016103	51128	Hs.432984	NM_001033503	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	SAR1 homolog B (S. cerevisiae)	protein-coding
chr5.86907858.+	chr5	86907858	86907859	+	0	NA	Intergenic	AluY|SINE|Alu	-199008	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr12.31575354.-	chr12	31575354	31575355	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96195	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr12.115112178.-	chr12	115112178	115112179	-	0	NA	"exon (NM_005996, exon 6 of 7)"	"exon (NM_005996, exon 6 of 7)"	-9791	NM_016569	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
chr12.34501162.+	chr12	34501162	34501163	+	0	NA	Intergenic	GSATII|Satellite|centr	325946	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr18.12734584.-	chr18	12734584	12734585	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31597	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr7.5570051.+	chr7	5570051	5570052	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	181	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr3.158905769.-	chr3	158905769	158905770	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	"intron (NM_001197114, intron 1 of 9)"	85267	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr10.120946059.-	chr10	120946059	120946060	-	0	NA	Intergenic	Intergenic	7714	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chrX.40945676.-	chrX	40945676	40945677	-	0	NA	"intron (NM_001039590, intron 1 of 44)"	CpG-27874	-788	NM_001039591	8239	Hs.77578	NM_001039590		USP9X	DFFRX|FAF|FAM	"ubiquitin specific peptidase 9, X-linked"	protein-coding
chr5.91967063.+	chr5	91967063	91967064	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939436	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr12.107112628.-	chr12	107112628	107112629	-	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	34150	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr5.177936348.-	chr5	177936348	177936349	-	0	NA	"intron (NM_173465, intron 2 of 28)"	AluSg7|SINE|Alu	-81208	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr6.126111958.-	chr6	126111958	126111959	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-49	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr2.240515779.+	chr2	240515779	240515780	+	0	NA	Intergenic	Intergenic	-168775	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	miscRNA
chr1.119532169.-	chr1	119532169	119532170	-	0	NA	promoter-TSS (NM_152380)	promoter-TSS (NM_152380)	-10	NM_152380	6913	Hs.146196	NM_152380	ENSG00000092607	TBX15	TBX14	T-box 15	protein-coding
chr12.111714730.+	chr12	111714730	111714731	+	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	92195	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr14.80915463.-	chr14	80915463	80915464	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218066	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr11.119019701.-	chr11	119019701	119019702	-	0	NA	promoter-TSS (NM_022169)	promoter-TSS (NM_022169)	49	NM_022169	64137	Hs.126378	NM_001142505	ENSG00000172350	ABCG4	WHITE2	"ATP-binding cassette, sub-family G (WHITE), member 4"	protein-coding
chr12.12518398.+	chr12	12518398	12518399	+	0	NA	"intron (NM_058169, intron 2 of 3)"	AluJb|SINE|Alu	8378	NM_058169	118426	Hs.720779	NM_058169	ENSG00000165714	LOH12CR1	LOH1CR12	"loss of heterozygosity, 12, chromosomal region 1"	protein-coding
chr5.34008254.-	chr5	34008254	34008255	-	0	NA	promoter-TSS (NM_203382)	promoter-TSS (NM_203382)	34	NM_203382	23600	Hs.508343	NM_001167595	ENSG00000242110	AMACR	AMACRD|CBAS4|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
chr16.88387042.+	chr16	88387042	88387043	+	0	NA	Intergenic	L2b|LINE|L2	-106837	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr10.61503996.-	chr10	61503996	61503997	-	0	NA	"intron (NR_038200, intron 1 of 3)"	SVA_B|Other|Other	-9207	NR_038200	100507027	Hs.648790	NR_038199	ENSG00000227877	M1	-	uncharacterized LOC100507027	miscRNA
chr1.8021839.-	chr1	8021839	8021840	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-125	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr3.188566647.+	chr3	188566647	188566648	+	0	NA	"intron (NM_001167672, intron 7 of 9)"	AluSc|SINE|Alu	-323116	NM_198485	285386	Hs.729544	NM_198485		TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
chr7.961915.-	chr7	961915	961916	-	0	NA	"intron (NM_006869, intron 3 of 10)"	"intron (NM_006869, intron 3 of 10)"	-32374	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr6.158438966.-	chr6	158438966	158438967	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-886	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr9.137721493.+	chr9	137721493	137721494	+	0	NA	"intron (NM_000093, intron 63 of 65)"	"intron (NM_000093, intron 63 of 65)"	19722	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr2.95831499.+	chr2	95831499	95831500	+	0	NA	"5' UTR (NM_001017396, exon 1 of 4)"	"5' UTR (NM_001017396, exon 1 of 4)"	316	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr17.41185277.+	chr17	41185277	41185278	+	0	NA	Intergenic	AluY|SINE|Alu	8019	NM_005440	8153	Hs.603111	NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
chr6.89454136.-	chr6	89454136	89454137	-	0	NA	"intron (NM_003800, intron 13 of 15)"	AluSc|SINE|Alu	-219212	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
chr19.44489503.-	chr19	44489503	44489504	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1181	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr16.1332174.-	chr16	1332174	1332175	-	0	NA	Intergenic	AluSx|SINE|Alu	-25901	NM_012217	23430	Hs.677789	NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
chr1.242412171.+	chr1	242412171	242412172	+	0	NA	"intron (NM_152666, intron 5 of 10)"	AluSx|SINE|Alu	200613	NM_001195811	200150	Hs.672452	NM_001195811	ENSG00000180287	PLD5	PLDC	"phospholipase D family, member 5"	protein-coding
chr17.73161390.-	chr17	73161390	73161391	-	0	NA	Intergenic	AluY|SINE|Alu	10615	NM_016185	51155	Hs.532803	NM_001002032	ENSG00000189159	HN1	ARM2|HN1A	hematological and neurological expressed 1	protein-coding
chr1.109995495.-	chr1	109995495	109995496	-	0	NA	Intergenic	AluY|SINE|Alu	13605	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr4.26862249.+	chr4	26862249	26862250	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-64	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr6.143226997.-	chr6	143226997	143226998	-	0	NA	"intron (NM_006734, intron 1 of 9)"	AluSz6|SINE|Alu	-39341	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chr20.46387720.-	chr20	46387720	46387721	-	0	NA	"intron (NM_198596, intron 1 of 20)"	L2a|LINE|L2	-27088	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr16.209973.-	chr16	209973	209974	-	0	NA	Intergenic	Intergenic	6000	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr14.101892602.+	chr14	101892602	101892603	+	0	NA	Intergenic	AluY|SINE|Alu	129411	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr1.9776098.+	chr1	9776098	9776099	+	0	NA	"exon (NM_005026, exon 5 of 24)"	"exon (NM_005026, exon 5 of 24)"	-61454	NR_027045	644997	Hs.568595	NM_001045478	ENSG00000179840	C1orf200	-	chromosome 1 open reading frame 200	miscRNA
chr19.3644536.-	chr19	3644536	3644537	-	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	17723	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr7.36403836.-	chr7	36403836	36403837	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2946	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr19.49701786.+	chr19	49701786	49701787	+	0	NA	"intron (NM_017636, intron 17 of 24)"	AluSq|SINE|Alu	40770	NM_017636	54795	Hs.467101	NM_001195227	ENSG00000130529	TRPM4	PFHB1B|TRPM4B	"transient receptor potential cation channel, subfamily M, member 4"	protein-coding
chr3.32863304.-	chr3	32863304	32863305	-	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	-3794	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr17.30593312.+	chr17	30593312	30593313	+	0	NA	"exon (NM_138328, exon 1 of 9)"	"exon (NM_138328, exon 1 of 9)"	117	NM_138328	162494	Hs.655027	NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	"rhomboid, veinlet-like 3 (Drosophila)"	protein-coding
chr12.121338297.-	chr12	121338297	121338298	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	-3858	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr2.44326607.+	chr2	44326607	44326608	+	0	NA	Intergenic	AluSx|SINE|Alu	-69393	NM_177969	5495	Hs.416769	NM_001033556	ENSG00000138032	PPM1B	PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	"protein phosphatase, Mg2+/Mn2+ dependent, 1B"	protein-coding
chr12.50448256.-	chr12	50448256	50448257	-	0	NA	Intergenic	AluSx|SINE|Alu	3164	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
chr12.105389753.+	chr12	105389753	105389754	+	0	NA	Intergenic	AluY|SINE|Alu	9655	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chrX.90204105.+	chrX	90204105	90204106	+	0	NA	Intergenic	AluY|SINE|Alu	-485492	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr16.49892678.-	chr16	49892678	49892679	-	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	848	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr2.236999543.-	chr2	236999543	236999544	-	0	NA	"intron (NM_001037131, intron 16 of 17)"	AluSq|SINE|Alu	-77109	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr2.84509760.-	chr2	84509760	84509761	-	0	NA	Intergenic	AluY|SINE|Alu	8046	NR_003663	388965	Hs.744643	NR_003663	ENSG00000182814	FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
chr14.100012572.+	chr14	100012572	100012573	+	0	NA	"intron (NM_001144995, intron 1 of 5)"	"intron (NM_001144995, intron 1 of 5)"	58155	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
chr1.101496334.-	chr1	101496334	101496335	-	0	NA	Intergenic	AluY|SINE|Alu	4972	NM_001077395	51611	Hs.440776	NM_001077394		DPH5	CGI-30|HSPC143|NPD015	DPH5 homolog (S. cerevisiae)	protein-coding
chr19.58859480.-	chr19	58859480	58859481	-	0	NA	"intron (NM_130786, intron 6 of 7)"	AluSx|SINE|Alu	3856	NR_015380	503538	Hs.709582	NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	miscRNA
chr19.36563257.+	chr19	36563257	36563258	+	0	NA	"intron (NM_173636, intron 8 of 31)"	L2b|LINE|L2	17474	NM_001083961	284403	Hs.116244	NM_001083961	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
chr1.156527510.-	chr1	156527510	156527511	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14886	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr15.78941415.+	chr15	78941415	78941416	+	0	NA	Intergenic	AluJo|SINE|Alu	-7828	NM_001256567	1143	Hs.624178	NM_000750	ENSG00000117971	CHRNB4	-	"cholinergic receptor, nicotinic, beta 4 (neuronal)"	protein-coding
chr2.242707669.+	chr2	242707669	242707670	+	0	NA	"3' UTR (NM_152783, exon 10 of 10)"	"3' UTR (NM_152783, exon 10 of 10)"	-8571	NM_022134	64090	Hs.632556	NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
chr7.1542793.+	chr7	1542793	1542794	+	0	NA	"exon (NM_001080453, exon 3 of 48)"	"exon (NM_001080453, exon 3 of 48)"	1225	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr8.142397041.+	chr8	142397041	142397042	+	0	NA	Intergenic	Intergenic	-19676	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr2.39016623.-	chr2	39016623	39016624	-	0	NA	Intergenic	AluY|SINE|Alu	-11296	NM_024775	79833	Hs.143818	NM_024775		GEMIN6	-	gem (nuclear organelle) associated protein 6	protein-coding
chr8.3825581.+	chr8	3825581	3825582	+	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	1026747	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr7.23478893.+	chr7	23478893	23478894	+	0	NA	"intron (NM_006547, intron 2 of 14)"	AluYf4|SINE|Alu	31102	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
chr1.197234017.-	chr1	197234017	197234018	-	0	NA	"intron (NM_001257965, intron 1 of 14)"	AluSx1|SINE|Alu	3317	NM_001257966	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr10.118500972.-	chr10	118500972	118500973	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1113	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr14.55349949.-	chr14	55349949	55349950	-	0	NA	"intron (NM_001024024, intron 1 of 6)"	AluSg|SINE|Alu	5038	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	miscRNA
chr1.6145972.-	chr1	6145972	6145973	-	0	NA	"intron (NM_172130, intron 6 of 14)"	"intron (NM_172130, intron 6 of 14)"	-39798	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr9.1433378.-	chr9	1433378	1433379	-	0	NA	Intergenic	AluSc|SINE|Alu	-382758	NM_181872	10655	Hs.59506	NM_001130865	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
chr2.242824354.+	chr2	242824354	242824355	+	0	NA	Intergenic	Intergenic	12468	NM_173821	285093	Hs.376307	NM_173821		CXXC11	C2orf85	CXXC finger protein 11	protein-coding
chr10.42644595.-	chr10	42644595	42644596	-	0	NA	Intergenic	Intergenic	-218898	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr11.1122345.+	chr11	1122345	1122346	+	0	NA	Intergenic	Intergenic	47470	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chrX.151336676.+	chrX	151336676	151336677	+	0	NA	"3' UTR (NM_000808, exon 10 of 10)"	"3' UTR (NM_000808, exon 10 of 10)"	-29626	NM_001204811	100533997	Hs.18048	NM_001204811		MAGEA10-MAGEA5	CT1.5	MAGEA10-MAGEA5 readthrough	protein-coding
chr19.17585874.+	chr19	17585874	17585875	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4574	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr5.113697122.-	chr5	113697122	113697123	-	0	NA	promoter-TSS (NM_021614)	promoter-TSS (NM_021614)	894	NM_021614	3781	Hs.98280	NM_021614	ENSG00000080709	KCNN2	KCa2.2|SK2|SKCA2|hSK2	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2"	protein-coding
chr16.33966268.-	chr16	33966268	33966269	-	0	NA	Intergenic	CpG	3765	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	miscRNA
chr15.30396220.-	chr15	30396220	30396221	-	0	NA	"intron (NR_026859, intron 1 of 4)"	CpG	-285	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr12.132372588.-	chr12	132372588	132372589	-	0	NA	Intergenic	AluSx|SINE|Alu	6691	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr3.14349504.-	chr3	14349504	14349505	-	0	NA	Intergenic	Intergenic	94602	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr11.1122307.-	chr11	1122307	1122308	-	0	NA	Intergenic	Intergenic	-47432	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr12.122709762.+	chr12	122709762	122709763	+	0	NA	"intron (NR_024600, intron 2 of 6)"	AluSz|SINE|Alu	2306	NR_024601	56616	Hs.169611	NM_019887	ENSG00000184047	DIABLO	DFNA64|DIABLO-S|SMAC|SMAC3	"diablo, IAP-binding mitochondrial protein"	protein-coding
chr12.57177797.-	chr12	57177797	57177798	-	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	-20689	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr7.100963609.-	chr7	100963609	100963610	-	0	NA	"intron (NM_001130821, intron 1 of 4)"	AluY|SINE|Alu	-1484	NM_001130820	64792	Hs.389104	NM_001130820		RABL5	-	"RAB, member RAS oncogene family-like 5"	protein-coding
chr3.48028111.-	chr3	48028111	48028112	-	0	NA	"intron (NM_002375, intron 2 of 18)"	AluSz6|SINE|Alu	-102658	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr11.1476587.+	chr11	1476587	1476588	+	0	NA	"intron (NM_003957, intron 16 of 19)"	"intron (NM_003957, intron 16 of 19)"	31361	NM_001172223	81532	Hs.370360	NM_001172223		MOB2	HCCA2	MOB kinase activator 2	protein-coding
chr16.78282843.-	chr16	78282843	78282844	-	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	-149516	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr6.76530226.+	chr6	76530226	76530227	+	0	NA	"intron (NM_004999, intron 2 of 34)"	AluSq2|SINE|Alu	71317	NM_004999	4646	Hs.149387	NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
chr4.69917207.+	chr4	69917207	69917208	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-31094	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr8.144504257.-	chr8	144504257	144504258	-	0	NA	Intergenic	Intergenic	-8345	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr19.36571170.+	chr19	36571170	36571171	+	0	NA	"intron (NM_173636, intron 9 of 31)"	AluY|SINE|Alu	25387	NM_001083961	284403	Hs.116244	NM_001083961	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
chr2.194824202.+	chr2	194824202	194824203	+	0	NA	Intergenic	AluY|SINE|Alu	1209631	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071	"PCGEM1, prostate-specific transcript (non-protein coding)"	miscRNA
chr9.719217.-	chr9	719217	719218	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12411	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr6.141000374.-	chr6	141000374	141000375	-	0	NA	Intergenic	AluY|SINE|Alu	4577	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	miscRNA
chr6.34857489.+	chr6	34857489	34857490	+	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	451	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr8.27695253.-	chr8	27695253	27695254	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-96	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr16.67519960.+	chr16	67519960	67519961	+	0	NA	Intergenic	AluY|SINE|Alu	-2244	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr20.39037341.-	chr20	39037341	39037342	-	0	NA	Intergenic	AluYk4|SINE|Alu	-280535	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)	protein-coding
chr10.97383358.-	chr10	97383358	97383359	-	0	NA	"intron (NM_001017423, intron 11 of 17)"	AluSp|SINE|Alu	-33209	NM_001017423	5832	Hs.500645	NM_001017423	ENSG00000059573	ALDH18A1	ARCL3A|GSAS|P5CS|PYCS	"aldehyde dehydrogenase 18 family, member A1"	protein-coding
chr19.18075055.+	chr19	18075055	18075056	+	0	NA	"intron (NM_002248, intron 2 of 10)"	"intron (NM_002248, intron 2 of 10)"	12944	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr10.118239776.-	chr10	118239776	118239777	-	0	NA	Intergenic	AluY|SINE|Alu	-52352	NM_001011709	119548	Hs.276724	NM_001011709	ENSG00000203837	PNLIPRP3	-	pancreatic lipase-related protein 3	protein-coding
chr10.99441504.-	chr10	99441504	99441505	-	0	NA	"intron (NM_021732, intron 1 of 2)"	AluYb8|SINE|Alu	-5511	NM_021732	60370	Hs.23918	NM_021732	ENSG00000119986	AVPI1	PP5395|RP11-548K23.7|VIP32|VIT32	arginine vasopressin-induced 1	protein-coding
chrX.142322500.-	chrX	142322500	142322501	-	0	NA	Intergenic	AluY|SINE|Alu	-208796	NM_001009613	441525	Hs.535082	NM_001009613	ENSG00000189326	SPANXN4	CT11.9	"SPANX family, member N4"	protein-coding
chr6.2085035.-	chr6	2085035	2085036	-	0	NA	"intron (NM_001253846, intron 4 of 10)"	AluY|SINE|Alu	-91190	NM_001253846	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chrM.6570.-	chrM	6570	6571	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chrX.53123418.-	chrX	53123418	53123419	-	0	NA	Intergenic	CpG	-11876	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr7.5396371.+	chr7	5396371	5396372	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66806	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chrX.39795230.-	chrX	39795230	39795231	-	0	NA	Intergenic	Intergenic	-161489	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chrY.13464379.+	chrY	13464379	13464380	+	0	NA	Intergenic	LSAU|Satellite|Satellite	1069010	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
chr17.78977916.+	chr17	78977916	78977917	+	0	NA	Intergenic	CpG	12275	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr6.123144129.+	chr6	123144129	123144130	+	0	NA	Intergenic	AluY|SINE|Alu	34158	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	"sphingomyelin phosphodiesterase, acid-like 3A"	protein-coding
chr11.73347308.+	chr11	73347308	73347309	+	0	NA	Intergenic	AluSq|SINE|Alu	-9915	NM_001130033	58473	Hs.445489	NM_001130033	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	"pleckstrin homology domain containing, family B (evectins) member 1"	protein-coding
chr5.128197045.+	chr5	128197045	128197046	+	0	NA	Intergenic	AluYk4|SINE|Alu	-104165	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr4.100907289.+	chr4	100907289	100907290	+	0	NA	Intergenic	AluY|SINE|Alu	35653	NR_002799	256880	Hs.448554	NR_002799		LOC256880	-	uncharacterized LOC256880	miscRNA
chr8.138265818.-	chr8	138265818	138265819	-	0	NA	Intergenic	AluY|SINE|Alu	-1243247	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	"family with sequence similarity 135, member B"	protein-coding
chr8.58122877.-	chr8	58122877	58122878	-	0	NA	Intergenic	MER50|LTR|ERV1	8771	NR_038235	100507651	Hs.631151	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	miscRNA
chr2.92172352.-	chr2	92172352	92172353	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-43193	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr20.18441258.+	chr20	18441258	18441259	+	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	6571	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr5.1137775.+	chr5	1137775	1137776	+	0	NA	Intergenic	Intergenic	-25603	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr17.18785149.-	chr17	18785149	18785150	-	0	NA	"intron (NM_002767, intron 6 of 11)"	"intron (NM_002767, intron 6 of 11)"	-16367	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr5.36727742.-	chr5	36727742	36727743	-	0	NA	Intergenic	AluY|SINE|Alu	-119311	NM_001166695	6507	Hs.481918	NM_001166695	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	"solute carrier family 1 (glial high affinity glutamate transporter), member 3"	protein-coding
chr13.77954528.-	chr13	77954528	77954529	-	0	NA	Intergenic	AluSc|SINE|Alu	53351	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr17.74616080.+	chr17	74616080	74616081	+	0	NA	Intergenic	AluSx|SINE|Alu	23814	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr1.113275288.-	chr1	113275288	113275289	-	0	NA	Intergenic	AluY|SINE|Alu	-12099	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr7.158240688.-	chr7	158240688	158240689	-	0	NA	"intron (NM_130842, intron 1 of 21)"	"intron (NM_130842, intron 1 of 21)"	-84817	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr7.95234892.+	chr7	95234892	95234893	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8967	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr1.158012590.-	chr1	158012590	158012591	-	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	-49527	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr7.39452695.-	chr7	39452695	39452696	-	0	NA	"intron (NM_001166018, intron 7 of 10)"	AluY|SINE|Alu	6750	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	miscRNA
chr17.2323419.+	chr17	2323419	2323420	+	0	NA	"exon (NM_024086, exon 10 of 10)"	"exon (NM_024086, exon 10 of 10)"	-4689	NR_028335	284009	Hs.632244	NR_028335		LOC284009	-	uncharacterized LOC284009	miscRNA
chr19.4866186.+	chr19	4866186	4866187	+	0	NA	"intron (NM_005817, intron 1 of 7)"	AluSx1|SINE|Alu	1594	NM_001164194	10226	Hs.140452	NM_001164189	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
chr11.68128974.+	chr11	68128974	68128975	+	0	NA	"intron (NM_002335, intron 3 of 22)"	AluY|SINE|Alu	48866	NM_002335	4041	Hs.6347	NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
chr1.161508334.-	chr1	161508334	161508335	-	0	NA	Intergenic	AluSx|SINE|Alu	-11484	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr15.63229239.+	chr15	63229239	63229240	+	0	NA	Intergenic	AluSp|SINE|Alu	-105599	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr16.46387646.-	chr16	46387646	46387647	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215363	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr5.171395339.-	chr5	171395339	171395340	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38538	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr1.32731817.+	chr1	32731817	32731818	+	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	-7895	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chrX.113575429.+	chrX	113575429	113575430	+	0	NA	Intergenic	AluJb|SINE|Alu	-243122	NM_001256761	3358	Hs.149037	NM_000868	ENSG00000147246	HTR2C	5-HT2C|5-HTR2C|HTR1C	"5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled"	protein-coding
chr6.46742357.+	chr6	46742357	46742358	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18737	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr11.18743328.-	chr11	18743328	18743329	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4449	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr1.17029626.+	chr1	17029626	17029627	+	0	NA	"intron (NR_026567, intron 5 of 10)"	"intron (NR_026567, intron 5 of 10)"	17026	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr7.6454033.-	chr7	6454033	6454034	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	-33610	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr4.108641321.-	chr4	108641321	108641322	-	0	NA	promoter-TSS (NM_005443)	promoter-TSS (NM_005443)	-98	NM_005443	9061	Hs.368610	NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
chr1.183670797.-	chr1	183670797	183670798	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48349	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr11.94018340.+	chr11	94018340	94018341	+	0	NA	Intergenic	AluYc|SINE|Alu	-20463	NM_001199206	390243	Hs.553758	NM_001080486	ENSG00000183560	FOLR4	Folbp3	"folate receptor 4, delta (putative)"	protein-coding
chr10.104209683.-	chr10	104209683	104209684	-	0	NA	TTS (NM_024886)	TTS (NM_024886)	-109	NR_038937	100505761	Hs.656457	NR_038937	ENSG00000269609	LOC100505761	-	uncharacterized LOC100505761	miscRNA
chr1.2260033.+	chr1	2260033	2260034	+	0	NA	"intron (NM_024848, intron 12 of 13)"	"intron (NM_024848, intron 12 of 13)"	24067	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
chr14.90254583.-	chr14	90254583	90254584	-	0	NA	Intergenic	AluSx|SINE|Alu	-166506	NM_145231	90141	Hs.123232	NM_145231		EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
chr18.48196289.-	chr18	48196289	48196290	-	0	NA	"intron (NM_002747, intron 2 of 5)"	AluY|SINE|Alu	-109805	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chr9.4666427.+	chr9	4666427	4666428	+	0	NA	"intron (NM_001039395, intron 1 of 10)"	"intron (NM_001039395, intron 1 of 10)"	247	NM_001039395	55064	Hs.179615	NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6-like	protein-coding
chr3.49940649.-	chr3	49940649	49940650	-	0	NA	"exon (NM_002447, exon 1 of 20)"	"exon (NM_002447, exon 1 of 20)"	-657	NM_001244937	4486	Hs.517973	NM_001244937	ENSG00000164078	MST1R	CD136|CDw136|PTK8|RON	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding
chr19.30169443.-	chr19	30169443	30169444	-	0	NA	Intergenic	Intergenic	-13116	NM_024310	79156	Hs.466383	NM_024310	ENSG00000166289	PLEKHF1	APPD|PHAFIN1|ZFYVE15	"pleckstrin homology domain containing, family F (with FYVE domain) member 1"	protein-coding
chr3.46792290.+	chr3	46792290	46792291	+	0	NA	Intergenic	CpG	-6045	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr2.45870565.+	chr2	45870565	45870566	+	0	NA	Intergenic	Intergenic	-8478	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	"protein kinase C, epsilon"	protein-coding
chr12.110437482.-	chr12	110437482	110437483	-	0	NA	"5' UTR (NM_033121, exon 1 of 15)"	"5' UTR (NM_033121, exon 1 of 15)"	-247	NM_033121	88455	Hs.528703	NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
chr20.47088271.-	chr20	47088271	47088272	-	0	NA	Intergenic	Intergenic	-99617	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr3.36421976.-	chr3	36421976	36421977	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	121	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr22.38336415.-	chr22	38336415	38336416	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13239	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr11.70672683.+	chr11	70672683	70672684	+	0	NA	"intron (NM_012309, intron 8 of 22)"	"intron (NM_012309, intron 8 of 22)"	-36212	NR_073536	220070	Hs.326766	XR_110890	ENSG00000171671	SHANK2-AS3	C11orf76	SHANK2 antisense RNA 3	miscRNA
chr1.6145978.-	chr1	6145978	6145979	-	0	NA	"intron (NM_172130, intron 6 of 14)"	"intron (NM_172130, intron 6 of 14)"	-39804	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr17.7011318.-	chr17	7011318	7011319	-	0	NA	"intron (NM_001201352, intron 4 of 8)"	"intron (NM_001201352, intron 4 of 8)"	-6311	NM_080914	433	Hs.654440	NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
chr4.166248577.+	chr4	166248577	166248578	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-241	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr9.92014672.-	chr9	92014672	92014673	-	0	NA	"intron (NM_001142287, intron 6 of 20)"	AluSx1|SINE|Alu	-79939	NM_006378	10507	Hs.494406	NM_182635	ENSG00000187764	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D"	protein-coding
chr4.1400181.-	chr4	1400181	1400182	-	0	NA	Intergenic	CpG	-14841	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr12.33592633.-	chr12	33592633	33592634	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-121	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr19.992279.-	chr19	992279	992280	-	0	NA	"intron (NM_024100, intron 8 of 9)"	"intron (NM_024100, intron 8 of 9)"	-7951	NM_024100	57418	Hs.325321	NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
chr4.110600285.-	chr4	110600285	110600286	-	0	NA	"intron (NM_017918, intron 4 of 7)"	SVA_A|Other|Other	-24344	NM_001226	839	Hs.654616	NM_001226	ENSG00000138794	CASP6	MCH2	"caspase 6, apoptosis-related cysteine peptidase"	protein-coding
chr4.120549657.+	chr4	120549657	120549658	+	0	NA	promoter-TSS (NM_033437)	promoter-TSS (NM_033437)	324	NM_001083	8654	Hs.647971	NM_001083	ENSG00000138735	PDE5A	CGB-PDE|CN5A|PDE5	"phosphodiesterase 5A, cGMP-specific"	protein-coding
chr5.18111613.-	chr5	18111613	18111614	-	0	NA	Intergenic	AluY|SINE|Alu	724194	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr9.94666434.-	chr9	94666434	94666435	-	0	NA	"intron (NM_004560, intron 1 of 8)"	AluSx|SINE|Alu	-46010	NM_004560	4920	Hs.644776	NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
chr6.151727641.+	chr6	151727641	151727642	+	0	NA	"intron (NM_001271937, intron 9 of 10)"	AluY|SINE|Alu	-14964	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
chr14.95511471.-	chr14	95511471	95511472	-	0	NA	Intergenic	Intergenic	-88369	NM_001195573	23405	Hs.87889	NM_001195573	ENSG00000100697	DICER1	DCR1|Dicer|HERNA|MNG1	"dicer 1, ribonuclease type III"	protein-coding
chr1.194964715.+	chr1	194964715	194964716	+	0	NA	Intergenic	AluYa5|SINE|Alu	1586896	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr11.83150101.+	chr11	83150101	83150102	+	0	NA	Intergenic	AluSx|SINE|Alu	-152724	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr2.288127.+	chr2	288127	288128	+	0	NA	"5' UTR (NM_001002919, exon 1 of 6)"	"5' UTR (NM_001002919, exon 1 of 6)"	181	NM_001002919	285016	Hs.355207	NM_001002919	ENSG00000189292	FAM150B	PRO1097|RGPG542	"family with sequence similarity 150, member B"	protein-coding
chr5.1300285.+	chr5	1300285	1300286	+	0	NA	Intergenic	Intergenic	-5123	NM_198253	7015	Hs.492203	NM_001193376	ENSG00000164362	TERT	DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
chr3.49479553.+	chr3	49479553	49479554	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12796	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
chr16.2333172.-	chr16	2333172	2333173	-	0	NA	"intron (NM_001089, intron 26 of 32)"	"intron (NM_001089, intron 26 of 32)"	-8551	NR_039868	100616241		NR_039868	ENSG00000264004	MIR4717	-	microRNA 4717	miscRNA
chr2.119939745.-	chr2	119939745	119939746	-	0	NA	Intergenic	Intergenic	23274	NM_182528	165257	Hs.433493	NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	"complement component 1, q subcomponent-like 2"	protein-coding
chr18.27932475.+	chr18	27932475	27932476	+	0	NA	Intergenic	MER52A|LTR|ERV1	53599	NR_031684	100302131		NR_031684		MIR302F	MIRN302F|hsa-mir-302f	microRNA 302f	miscRNA
chr8.6812642.+	chr8	6812642	6812643	+	0	NA	Intergenic	AluSp|SINE|Alu	-3521	NR_073407	449491	Hs.627154	NR_073407		DEFA8P	DEFAP1	"defensin, alpha 8 pseudogene"	pseudo
chr4.185655135.-	chr4	185655135	185655136	-	0	NA	"intron (NM_024629, intron 1 of 12)"	CpG	-151	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr5.36142988.-	chr5	36142988	36142989	-	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	-5102	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr19.2612103.-	chr19	2612103	2612104	-	0	NA	"intron (NM_052847, intron 2 of 4)"	AluSc|SINE|Alu	-90643	NM_052847	2788	Hs.735237	NM_052847	ENSG00000176533	GNG7	-	"guanine nucleotide binding protein (G protein), gamma 7"	protein-coding
chr5.79863368.-	chr5	79863368	79863369	-	0	NA	"intron (NM_001004441, intron 2 of 4)"	AluSq|SINE|Alu	-2936	NM_001004441	340120	Hs.519404	NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
chr12.131419285.+	chr12	131419285	131419286	+	0	NA	Intergenic	AluSz|SINE|Alu	-19167	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr7.1474634.+	chr7	1474634	1474635	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24475	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr12.49035828.+	chr12	49035828	49035829	+	0	NA	Intergenic	SVA_A|Other|Other	12473	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr18.47285193.+	chr18	47285193	47285194	+	0	NA	Intergenic	AluY|SINE|Alu	55058	NM_006111	10449	Hs.200136	NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
chr19.55728140.+	chr19	55728140	55728141	+	0	NA	Intergenic	Intergenic	-7266	NM_001161440	5794	Hs.657630	NM_001161440	ENSG00000080031	PTPRH	SAP1	"protein tyrosine phosphatase, receptor type, H"	protein-coding
chr7.5396359.-	chr7	5396359	5396360	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	-66818	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr5.86907778.+	chr5	86907778	86907779	+	0	NA	Intergenic	AluY|SINE|Alu	-198928	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr12.33592614.-	chr12	33592614	33592615	-	0	NA	"5' UTR (NM_198992, exon 1 of 7)"	"5' UTR (NM_198992, exon 1 of 7)"	-140	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr7.3828923.-	chr7	3828923	3828924	-	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	340394	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr4.3495723.-	chr4	3495723	3495724	-	0	NA	"3' UTR (NM_001256896, exon 4 of 4)"	"3' UTR (NM_001256896, exon 4 of 4)"	-9452	NM_001256896	285489	Hs.701584	NM_001164673	ENSG00000175920	DOK7	C4orf25|CMS1B	docking protein 7	protein-coding
chr11.17229829.-	chr11	17229829	17229830	-	0	NA	Intergenic	CpG	38475	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr11.120093180.-	chr11	120093180	120093181	-	0	NA	"intron (NM_178507, intron 1 of 3)"	AluSx|SINE|Alu	-11433	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
chr7.75157483.-	chr7	75157483	75157484	-	0	NA	promoter-TSS (NR_028059)	promoter-TSS (NR_028059)	30	NR_028059	5387	Hs.661055	XR_172481	ENSG00000127957	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	postmeiotic segregation increased 2 pseudogene 3	pseudo
chr14.92023756.+	chr14	92023756	92023757	+	0	NA	Intergenic	SVA_D|Other|Other	-47112	NM_032560	55671	Hs.533887	NM_017936	ENSG00000100796	SMEK1	FLFL1|KIAA2010|PP4R3A|smk-1|smk1	"SMEK homolog 1, suppressor of mek1 (Dictyostelium)"	protein-coding
chr20.32873732.-	chr20	32873732	32873733	-	0	NA	"intron (NM_000687, intron 8 of 9)"	AluY|SINE|Alu	-17483	NM_000687	191	Hs.388004	NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
chr12.34501147.-	chr12	34501147	34501148	-	0	NA	Intergenic	GSATII|Satellite|centr	-325931	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr19.5698202.+	chr19	5698202	5698203	+	0	NA	"intron (NM_001276480, intron 10 of 17)"	"intron (NM_001276480, intron 10 of 17)"	7856	NM_015414	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
chr14.97125802.+	chr14	97125802	97125803	+	0	NA	Intergenic	AluSz|SINE|Alu	-137882	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr4.1673241.+	chr4	1673241	1673242	+	0	NA	"intron (NM_001174070, intron 1 of 4)"	(CCCCAG)n|Simple_repeat|Simple_repeat	12477	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr2.27526309.-	chr2	27526309	27526310	-	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	-4821	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr2.114384840.-	chr2	114384840	114384841	-	0	NA	promoter-TSS (NR_024531)	promoter-TSS (NR_024531)	-23	NM_007082	11159	Hs.446425	NM_007082	ENSG00000144134	RABL2A	-	"RAB, member of RAS oncogene family-like 2A"	protein-coding
chr2.27526291.+	chr2	27526291	27526292	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4839	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr8.141276711.-	chr8	141276711	141276712	-	0	NA	"intron (NM_031466, intron 15 of 22)"	AluY|SINE|Alu	-191150	NM_001160372	83696	Hs.733622	NM_001160372	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
chr2.240402016.-	chr2	240402016	240402017	-	0	NA	Intergenic	Intergenic	79373	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr6.99291396.-	chr6	99291396	99291397	-	0	NA	Intergenic	CpG	-8816	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
chr18.331155.-	chr18	331155	331156	-	0	NA	"intron (NM_130386, intron 8 of 9)"	AluSz|SINE|Alu	63096	NM_005131	9984	Hs.712543	NM_005131	ENSG00000079134	THOC1	HPR1|P84|P84N5	THO complex 1	protein-coding
chr2.221058168.-	chr2	221058168	221058169	-	0	NA	Intergenic	MER52A|LTR|ERV1	286882	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	miscRNA
chr2.10163579.-	chr2	10163579	10163580	-	0	NA	Intergenic	Intergenic	20103	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr22.23792214.-	chr22	23792214	23792215	-	0	NA	Intergenic	(GGCTG)n|Simple_repeat|Simple_repeat	47415	NR_003950	150244	Hs.386693	NM_152509		ZDHHC8P1	ZDHHC8P	"zinc finger, DHHC-type containing 8 pseudogene 1"	pseudo
chr11.107880054.+	chr11	107880054	107880055	+	0	NA	"5' UTR (NM_003478, exon 1 of 19)"	"5' UTR (NM_003478, exon 1 of 19)"	646	NM_003478	8065	Hs.744123	NM_003478	ENSG00000166266	CUL5	VACM-1|VACM1	cullin 5	protein-coding
chr12.94947064.+	chr12	94947064	94947065	+	0	NA	Intergenic	AluSx|SINE|Alu	-8501	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr20.33005287.+	chr20	33005287	33005288	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48843	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr2.120964337.+	chr2	120964337	120964338	+	0	NA	Intergenic	Intergenic	16647	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
chr5.176292816.+	chr5	176292816	176292817	+	0	NA	"intron (NM_133369, intron 2 of 14)"	"intron (NM_133369, intron 2 of 14)"	33517	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
chr5.1137781.+	chr5	1137781	1137782	+	0	NA	Intergenic	Intergenic	-25609	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr4.185174249.-	chr4	185174249	185174250	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35135	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr8.56758297.-	chr8	56758297	56758298	-	0	NA	Intergenic	AluSx3|SINE|Alu	34089	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr15.25149769.+	chr15	25149769	25149770	+	0	NA	"intron (NM_022807, intron 3 of 12)"	AluSx|SINE|Alu	48071	NM_022805	6638	Hs.743549	NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
chr5.179718537.+	chr5	179718537	179718538	+	0	NA	"intron (NM_139068, intron 1 of 11)"	CpG	534	NM_139070	5601	Hs.484371	NM_001135044	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
chr7.64198957.-	chr7	64198957	64198958	-	0	NA	Intergenic	SVA_D|Other|Other	55809	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr19.2599590.-	chr19	2599590	2599591	-	0	NA	"intron (NM_052847, intron 2 of 4)"	"intron (NM_052847, intron 2 of 4)"	-103156	NM_052847	2788	Hs.735237	NM_052847	ENSG00000176533	GNG7	-	"guanine nucleotide binding protein (G protein), gamma 7"	protein-coding
chr22.17443285.+	chr22	17443285	17443286	+	0	NA	"3' UTR (NM_001037814, exon 10 of 10)"	"3' UTR (NM_001037814, exon 10 of 10)"	45827	NM_001037814	128954	Hs.434113	NM_001037814	ENSG00000215568	GAB4	-	"GRB2-associated binding protein family, member 4"	protein-coding
chr12.133366775.-	chr12	133366775	133366776	-	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	28324	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr17.14204677.-	chr17	14204677	14204678	-	0	NA	"5' UTR (NM_006041, exon 1 of 2)"	"5' UTR (NM_006041, exon 1 of 2)"	-171	NM_006041	9953	Hs.48384	NM_006041		HS3ST3B1	30ST3B1|3OST3B1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding
chr4.55034914.+	chr4	55034914	55034915	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60350	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr11.73020399.+	chr11	73020399	73020400	+	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	736	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chr11.45810297.+	chr11	45810297	45810298	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15326	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chrX.67548019.-	chrX	67548019	67548020	-	0	NA	"intron (NM_002547, intron 2 of 24)"	AluY|SINE|Alu	-105280	NM_002547	4983	Hs.128824	NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
chr3.45348445.+	chr3	45348445	45348446	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80631	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr12.26964583.+	chr12	26964583	26964584	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21548	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr16.89034198.-	chr16	89034198	89034199	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9306	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.24809090.-	chr2	24809090	24809091	-	0	NA	"intron (NM_003743, intron 1 of 20)"	AluSx1|SINE|Alu	-1744	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
chr2.36356743.+	chr2	36356743	36356744	+	0	NA	Intergenic	AluSx1|SINE|Alu	225970	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr16.29422166.-	chr16	29422166	29422167	-	0	NA	Intergenic	AluSx|SINE|Alu	38500	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr13.100409966.+	chr13	100409966	100409967	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluSq|SINE|Alu	114653	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chrX.42145037.-	chrX	42145037	42145038	-	0	NA	Intergenic	SVA_D|Other|Other	362750	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr3.68753640.-	chr3	68753640	68753641	-	0	NA	Intergenic	AluSx3|SINE|Alu	-228121	NM_001005527	151647	Hs.736925	NM_001005527	ENSG00000163377	FAM19A4	TAFA-4|TAFA4	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A4"	protein-coding
chr7.13901788.-	chr7	13901788	13901789	-	0	NA	Intergenic	AluY|SINE|Alu	-124351	NM_001163150	2115	Hs.22634	NM_001163147	ENSG00000006468	ETV1	ER81	ets variant 1	protein-coding
chr16.46387494.-	chr16	46387494	46387495	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-215515	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
chr14.23517069.-	chr14	23517069	23517070	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5693	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr21.47403504.-	chr21	47403504	47403505	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1841	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr9.134449905.+	chr9	134449905	134449906	+	0	NA	Intergenic	AluSx1|SINE|Alu	-43243	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr19.18714688.-	chr19	18714688	18714689	-	0	NA	"intron (NM_004750, intron 1 of 8)"	GC_rich|Low_complexity|Low_complexity	-2972	NM_004750	9244	Hs.114948	NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor-like factor 1	protein-coding
chr19.17758214.+	chr19	17758214	17758215	+	0	NA	"exon (NM_001080421, exon 16 of 42)"	"exon (NM_001080421, exon 16 of 42)"	40794	NM_001080421	23025	Hs.164502	NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A (C. elegans)	protein-coding
chr22.46326804.-	chr22	46326804	46326805	-	0	NA	"intron (NM_058238, intron 3 of 3)"	"intron (NM_058238, intron 3 of 3)"	-46204	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr21.37508246.+	chr21	37508246	37508247	+	0	NA	"intron (NM_001236, intron 1 of 2)"	CpG	983	NM_001236	874	Hs.154510	NM_001236	ENSG00000159231	CBR3	SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
chr2.115918934.+	chr2	115918934	115918935	+	0	NA	promoter-TSS (NM_001004360)	promoter-TSS (NM_001004360)	-14	NR_036580	389023	Hs.97540	NR_036580	ENSG00000235026	LOC389023	-	uncharacterized LOC389023	miscRNA
chrX.133976852.+	chrX	133976852	133976853	+	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	35629	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr6.46742382.-	chr6	46742382	46742383	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18712	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr11.68671204.+	chr11	68671204	68671205	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	99	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr5.140856619.+	chr5	140856619	140856620	+	0	NA	"exon (NM_032402, exon 1 of 1)"	"exon (NM_032402, exon 1 of 1)"	1050	NM_032403	5098	Hs.368160	NM_002588	ENSG00000240184	PCDHGC3	PC43|PCDH-GAMMA-C3|PCDH2	"protocadherin gamma subfamily C, 3"	protein-coding
chr12.2384439.-	chr12	2384439	2384440	-	0	NA	"intron (NR_046769, intron 1 of 2)"	"intron (NR_046769, intron 1 of 2)"	-5497	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	miscRNA
chr14.97183870.+	chr14	97183870	97183871	+	0	NA	Intergenic	AluY|SINE|Alu	-79814	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr1.114299510.-	chr1	114299510	114299511	-	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	-2267	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr3.82554728.+	chr3	82554728	82554729	+	0	NA	Intergenic	MER52A|LTR|ERV1	-743778	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr10.131769837.-	chr10	131769837	131769838	-	0	NA	Intergenic	CpG-3433	7746	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
chr20.5213475.+	chr20	5213475	5213476	+	0	NA	Intergenic	AluJr4|SINE|Alu	81540	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr1.161508252.-	chr1	161508252	161508253	-	0	NA	Intergenic	AluYf4|SINE|Alu	-11566	NM_001127592	2214	Hs.372679	XM_003960897	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3	"Fc fragment of IgG, low affinity IIIa, receptor (CD16a)"	protein-coding
chr18.24443279.-	chr18	24443279	24443280	-	0	NA	promoter-TSS (NM_004028)	promoter-TSS (NM_004028)	704	NM_004028	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	HMIWC2|MIWC	aquaporin 4	protein-coding
chr19.15466538.+	chr19	15466538	15466539	+	0	NA	"intron (NM_005858, intron 13 of 13)"	AluSx|SINE|Alu	24074	NM_005858	10270	Hs.743430	NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A kinase (PRKA) anchor protein 8	protein-coding
chr6.126111961.-	chr6	126111961	126111962	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-52	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr5.108745550.+	chr5	108745550	108745551	+	0	NA	"5' UTR (NM_014819, exon 1 of 10)"	"5' UTR (NM_014819, exon 1 of 10)"	125	NM_014819	9867	Hs.592564	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	"praja ring finger 2, E3 ubiquitin protein ligase"	protein-coding
chr21.47403466.+	chr21	47403466	47403467	+	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	1803	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr16.89261207.-	chr16	89261207	89261208	-	0	NA	TTS (NM_001242757)	TTS (NM_001242757)	-5322	NM_001242757	146429	Hs.743726	NM_001242757		SLC22A31	-	"solute carrier family 22, member 31"	protein-coding
chr8.52524473.+	chr8	52524473	52524474	+	0	NA	"intron (NM_144651, intron 2 of 22)"	"intron (NM_144651, intron 2 of 22)"	197532	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr6.13034407.+	chr6	13034407	13034408	+	0	NA	"intron (NM_001242648, intron 4 of 14)"	AluYf4|SINE|Alu	261411	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
chr8.144503755.+	chr8	144503755	144503756	+	0	NA	Intergenic	CpG	8847	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr17.34053874.+	chr17	34053874	34053875	+	0	NA	TTS (NM_001282)	TTS (NM_001282)	-4805	NM_033315	91608	Hs.437035	NM_033315	ENSG00000141150	RASL10B	RRP17|VTS58635	"RAS-like, family 10, member B"	protein-coding
chr7.13141789.+	chr7	13141789	13141790	+	0	NA	Intergenic	SVA_D|Other|Other	414878	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr6.165205827.+	chr6	165205827	165205828	+	0	NA	Intergenic	AluYb8|SINE|Alu	517284	NM_144980	168090	Hs.144734	NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
chr7.158790519.+	chr7	158790519	158790520	+	0	NA	Intergenic	Intergenic	-10526	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr8.56098939.-	chr8	56098939	56098940	-	0	NA	"intron (NM_052898, intron 1 of 2)"	AluY|SINE|Alu	-83922	NM_052898	114786	Hs.130197	NM_052898	ENSG00000206579	XKR4	XRG4	"XK, Kell blood group complex subunit-related family, member 4"	protein-coding
chr1.113275297.+	chr1	113275297	113275298	+	0	NA	Intergenic	AluY|SINE|Alu	12108	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr5.128196992.-	chr5	128196992	128196993	-	0	NA	Intergenic	AluYk4|SINE|Alu	104218	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr3.31574352.-	chr3	31574352	31574353	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	139	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr20.33283579.-	chr20	33283579	33283580	-	0	NA	Intergenic	AluY|SINE|Alu	8569	NM_021202	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
chr22.46394269.-	chr22	46394269	46394270	-	0	NA	Intergenic	Intergenic	8227	NR_027240	730668	Hs.640071	NR_027240		LOC730668	-	dynein heavy chain -like pseudogene	pseudo
chr1.43612781.+	chr1	43612781	43612782	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-813	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chr8.67454364.+	chr8	67454364	67454365	+	0	NA	Intergenic	Intergenic	48873	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
chr6.33500272.+	chr6	33500272	33500273	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47798	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr20.3148775.-	chr20	3148775	3148776	-	0	NA	"5' UTR (NM_014731, exon 1 of 3)"	"5' UTR (NM_014731, exon 1 of 3)"	-432	NM_014731	9762	Hs.90232	NM_014731	ENSG00000088899	LZTS3	PROSAPIP1|RP5-1187M17.10	"leucine zipper, putative tumor suppressor family member 3"	protein-coding
chr3.128161122.-	chr3	128161122	128161123	-	0	NA	Intergenic	Intergenic	21315	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	miscRNA
chr15.41539514.-	chr15	41539514	41539515	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16077	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr2.21484708.-	chr2	21484708	21484709	-	0	NA	Intergenic	Intergenic	217763	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr12.33592879.-	chr12	33592879	33592880	-	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	125	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr7.71847913.-	chr7	71847913	71847914	-	0	NA	"intron (NM_031468, intron 2 of 6)"	AluSc|SINE|Alu	-29447	NM_031468	83698	Hs.592750	NM_001017440	ENSG00000183166	CALN1	CABP8	calneuron 1	protein-coding
chr3.82554751.-	chr3	82554751	82554752	-	0	NA	Intergenic	MER52A|LTR|ERV1	743801	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr10.43563193.-	chr10	43563193	43563194	-	0	NA	Intergenic	Intergenic	9324	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr21.37565280.-	chr21	37565280	37565281	-	0	NA	"intron (NM_005128, intron 2 of 36)"	AluY|SINE|Alu	-28441	NM_005128	9980	Hs.204575	NM_005128	ENSG00000142197	DOPEY2	21orf5|C21orf5	dopey family member 2	protein-coding
chr4.185174256.-	chr4	185174256	185174257	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35142	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr17.1954036.-	chr17	1954036	1954037	-	0	NA	promoter-TSS (NR_029674)	promoter-TSS (NR_029674)	362	NR_029625	406994		NR_029625	ENSG00000207953	MIR212	MIRN212|mir-212	microRNA 212	miscRNA
chr16.2333306.-	chr16	2333306	2333307	-	0	NA	"exon (NM_001089, exon 26 of 33)"	"exon (NM_001089, exon 26 of 33)"	-8685	NR_039868	100616241		NR_039868	ENSG00000264004	MIR4717	-	microRNA 4717	miscRNA
chr5.176829679.-	chr5	176829679	176829680	-	0	NA	"exon (NM_000505, exon 13 of 14)"	"exon (NM_000505, exon 13 of 14)"	2042	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
chrX.69654762.-	chrX	69654762	69654763	-	0	NA	Intergenic	Intergenic	9943	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr12.131419264.+	chr12	131419264	131419265	+	0	NA	Intergenic	AluSz|SINE|Alu	-19188	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr18.29608117.+	chr18	29608117	29608118	+	0	NA	"intron (NM_017831, intron 1 of 5)"	AluY|SINE|Alu	9672	NM_017831	54941	Hs.633703	NM_017831	ENSG00000101695	RNF125	TRAC-1|TRAC1	"ring finger protein 125, E3 ubiquitin protein ligase"	protein-coding
chrX.152916298.+	chrX	152916298	152916299	+	0	NA	"3' UTR (NM_001395, exon 4 of 4)"	"3' UTR (NM_001395, exon 4 of 4)"	8401	NM_001395	1852	Hs.144879	NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
chr9.134449890.-	chr9	134449890	134449891	-	0	NA	Intergenic	AluSx1|SINE|Alu	43228	NM_031432	83549	Hs.9597	NM_001135954	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
chr2.48079324.+	chr2	48079324	48079325	+	0	NA	"intron (NM_001190274, intron 1 of 22)"	AluSx1|SINE|Alu	36534	NM_025133	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chrX.19461212.+	chrX	19461212	19461213	+	0	NA	"intron (NM_001001671, intron 6 of 28)"	AluSz|SINE|Alu	72167	NM_001001671	389840	Hs.713701	NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
chr19.13700378.-	chr19	13700378	13700379	-	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	83104	NM_023035	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr17.74707145.+	chr17	74707145	74707146	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-89	NM_001008528	439921	Hs.707692	NM_001008528	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
chr8.141523822.+	chr8	141523822	141523823	+	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	1741	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr5.16561369.-	chr5	16561369	16561370	-	0	NA	"intron (NM_001034850, intron 3 of 8)"	AluY|SINE|Alu	52262	NM_019000	54463	Hs.744032	NM_001034850	ENSG00000154153	FAM134B	JK-1|JK1	"family with sequence similarity 134, member B"	protein-coding
chr2.220492456.+	chr2	220492456	220492457	+	0	NA	"non-coding (NR_048551, exon 1 of 23)"	"non-coding (NR_048551, exon 1 of 23)"	164	NR_048551	6508	Hs.1176	NM_005070	ENSG00000114923	SLC4A3	AE3|SLC2C	"solute carrier family 4, anion exchanger, member 3"	protein-coding
chr9.83293432.+	chr9	83293432	83293433	+	0	NA	Intergenic	AluSc|SINE|Alu	1010164	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr20.19739692.+	chr20	19739692	19739693	+	0	NA	Intergenic	CpG	-127473	NM_001242581	54453	Hs.472270	NM_001242581	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
chr15.35333731.-	chr15	35333731	35333732	-	0	NA	Intergenic	AluSg|SINE|Alu	53234	NM_014106	54989	Hs.5327	NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
chr17.12456642.+	chr17	12456642	12456643	+	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	3357	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr3.135859548.+	chr3	135859548	135859549	+	0	NA	"intron (NM_001190447, intron 12 of 12)"	AluSp|SINE|Alu	53762	NM_001145417	55167	Hs.18631	NM_001145417	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
chr8.42217760.+	chr8	42217760	42217761	+	0	NA	"intron (NM_002690, intron 9 of 13)"	AluSz|SINE|Alu	16914	NM_014420	27121	Hs.159311	NM_014420	ENSG00000104371	DKK4	DKK-4	dickkopf homolog 4 (Xenopus laevis)	protein-coding
chr19.10467297.+	chr19	10467297	10467298	+	0	NA	"exon (NM_003331, exon 18 of 25)"	"exon (NM_003331, exon 18 of 25)"	-16952	NM_002162	3385	Hs.654563	NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
chr12.133328164.+	chr12	133328164	133328165	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10287	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr16.88387015.+	chr16	88387015	88387016	+	0	NA	Intergenic	L2b|LINE|L2	-106864	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr5.114712447.-	chr5	114712447	114712448	-	0	NA	Intergenic	AluYc3|SINE|Alu	79989	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr8.143698152.-	chr8	143698152	143698153	-	0	NA	Intergenic	Intergenic	2319	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr2.101245836.-	chr2	101245836	101245837	-	0	NA	Intergenic	Intergenic	-66418	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr17.2323427.-	chr17	2323427	2323428	-	0	NA	"exon (NM_024086, exon 10 of 10)"	"exon (NM_024086, exon 10 of 10)"	4697	NR_028335	284009	Hs.632244	NR_028335		LOC284009	-	uncharacterized LOC284009	miscRNA
chr17.1226143.-	chr17	1226143	1226144	-	0	NA	Intergenic	AluSx|SINE|Alu	-43186	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr16.122332.+	chr16	122332	122333	+	0	NA	"intron (NM_022450, intron 1 of 17)"	CpG	297	NM_022450	64285	Hs.57988	NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1 (Drosophila)	protein-coding
chr2.10127179.+	chr2	10127179	10127180	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSz6|SINE|Alu	35387	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr7.5334595.-	chr7	5334595	5334596	-	0	NA	"intron (NM_001040661, intron 6 of 10)"	"intron (NM_001040661, intron 6 of 10)"	-12034	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr19.34623423.+	chr19	34623423	34623424	+	0	NA	Intergenic	SVA_D|Other|Other	-39929	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr16.4065691.-	chr16	4065691	4065692	-	0	NA	"intron (NM_001116, intron 2 of 10)"	AluSx1|SINE|Alu	-100495	NM_001116	115	Hs.610484	NM_001116	ENSG00000162104	ADCY9	AC9	adenylate cyclase 9	protein-coding
chr17.8252944.-	chr17	8252944	8252945	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9756	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr17.41855399.-	chr17	41855399	41855400	-	0	NA	"intron (NM_004090, intron 1 of 2)"	AluSg4|SINE|Alu	-969	NM_004090	1845	Hs.181046	NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
chr1.108113231.+	chr1	108113231	108113232	+	0	NA	TTS (NM_001079874)	TTS (NM_001079874)	117895	NM_001079874	10451	Hs.267659	NM_001079874	ENSG00000134215	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
chr14.36549605.-	chr14	36549605	36549606	-	0	NA	"intron (NR_073454, intron 1 of 2)"	AluSc|SINE|Alu	-9972	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	miscRNA
chr7.64198971.+	chr7	64198971	64198972	+	0	NA	Intergenic	SVA_D|Other|Other	-55795	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr9.114281710.+	chr9	114281710	114281711	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5737	NM_001007169	158399	Hs.660784	NM_001007169	ENSG00000173258	ZNF483	ZKSCAN16|ZSCAN48	zinc finger protein 483	protein-coding
chr11.2051326.+	chr11	2051326	2051327	+	0	NA	Intergenic	Intergenic	-32261	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr19.10408167.+	chr19	10408167	10408168	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7512	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chr17.47735131.+	chr17	47735131	47735132	+	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	20394	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr6.33948488.-	chr6	33948488	33948489	-	0	NA	Intergenic	Intergenic	-19340	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr1.2689583.-	chr1	2689583	2689584	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	-16647	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
chr1.2157714.-	chr1	2157714	2157715	-	0	NA	Intergenic	AluJb|SINE|Alu	2420	NM_003036	6497	Hs.656507	NM_003036	ENSG00000157933	SKI	SGS|SKV	v-ski sarcoma viral oncogene homolog (avian)	protein-coding
chr18.25713310.-	chr18	25713310	25713311	-	0	NA	"intron (NM_001792, intron 2 of 15)"	AluSc8|SINE|Alu	-44135	NM_001792	1000	Hs.606106	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	"cadherin 2, type 1, N-cadherin (neuronal)"	protein-coding
chr16.29422173.-	chr16	29422173	29422174	-	0	NA	Intergenic	AluSx|SINE|Alu	38493	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr22.17043794.-	chr22	17043794	17043795	-	0	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-29906	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	"chaperonin containing TCP1, subunit 8 (theta)-like 2"	protein-coding
chr19.2187837.-	chr19	2187837	2187838	-	0	NA	"intron (NM_032482, intron 3 of 27)"	AluY|SINE|Alu	-23689	NM_032482	84444	Hs.713641	NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	"DOT1-like, histone H3 methyltransferase (S. cerevisiae)"	protein-coding
chr2.58008331.-	chr2	58008331	58008332	-	0	NA	Intergenic	AluSx1|SINE|Alu	265446	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr11.69189624.-	chr11	69189624	69189625	-	0	NA	Intergenic	Intergenic	-128002	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr19.38497645.+	chr19	38497645	38497646	+	0	NA	"intron (NM_015073, intron 1 of 21)"	"intron (NM_015073, intron 1 of 21)"	99777	NM_015073	23094	Hs.655502	NM_015073	ENSG00000105738	SIPA1L3	SPAL3	signal-induced proliferation-associated 1 like 3	protein-coding
chr19.13497331.+	chr19	13497331	13497332	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119943	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr1.54775773.+	chr1	54775773	54775774	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96206	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr19.8150704.+	chr19	8150704	8150705	+	0	NA	"intron (NM_032447, intron 54 of 62)"	"intron (NM_032447, intron 54 of 62)"	33058	NM_005624	6370	Hs.310511	NM_001201359	ENSG00000131142	CCL25	Ckb15|SCYA25|TECK	chemokine (C-C motif) ligand 25	protein-coding
chr9.11197005.-	chr9	11197005	11197006	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584282	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr10.1995016.-	chr10	1995016	1995017	-	0	NA	Intergenic	Intergenic	-61526	NR_040253	282980	Hs.576810	NR_040253	ENSG00000234962	LINC00700	-	long intergenic non-protein coding RNA 700	miscRNA
chr20.50013450.+	chr20	50013450	50013451	+	0	NA	"intron (NM_173091, intron 9 of 9)"	"intron (NM_173091, intron 9 of 9)"	56064	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	miscRNA
chr19.21728107.+	chr19	21728107	21728108	+	0	NA	Intergenic	AluYc|SINE|Alu	39670	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr17.21825583.+	chr17	21825583	21825584	+	0	NA	"intron (NR_028336, intron 1 of 1)"	SST1|Satellite|centr	213	NR_028336	284123	Hs.348578	NM_203392	ENSG00000178130	FAM27L	-	family with sequence similarity 27-like	miscRNA
chr7.6194292.+	chr7	6194292	6194293	+	0	NA	"exon (NM_032172, exon 15 of 18)"	"exon (NM_032172, exon 15 of 18)"	49742	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
chr8.144718227.-	chr8	144718227	144718228	-	0	NA	promoter-TSS (NM_001082480)	promoter-TSS (NM_001082480)	-44	NM_001261843	9831	Hs.741978	NM_001082480	ENSG00000183309	ZNF623	-	zinc finger protein 623	protein-coding
chr4.185174241.+	chr4	185174241	185174242	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35127	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr11.92637237.-	chr11	92637237	92637238	-	0	NA	Intergenic	AluY|SINE|Alu	65552	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chrX.91037184.+	chrX	91037184	91037185	+	0	NA	"intron (NM_032967, intron 1 of 5)"	CpG	2924	NM_032967	27328	Hs.655673	NM_001168360	ENSG00000102290	PCDH11X	PCDH-X|PCDH11|PCDHX	protocadherin 11 X-linked	protein-coding
chr4.185174124.-	chr4	185174124	185174125	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35010	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr9.35846376.-	chr9	35846376	35846377	-	0	NA	"exon (NM_001042590, exon 8 of 13)"	"exon (NM_001042590, exon 8 of 13)"	13895	NR_024006	92973	Hs.12509	NR_024006		FP588	-	uncharacterized LOC92973	miscRNA
chr4.110987555.-	chr4	110987555	110987556	-	0	NA	"intron (NM_024090, intron 2 of 3)"	AluY|SINE|Alu	-132216	NM_001130721	79071	Hs.652828	NM_001130721	ENSG00000170522	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
chr6.46742421.+	chr6	46742421	46742422	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18673	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr11.31560826.-	chr11	31560826	31560827	-	0	NA	"intron (NM_019040, intron 2 of 9)"	AluY|SINE|Alu	-29529	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1	elongator acetyltransferase complex subunit 4	protein-coding
chr3.120004183.-	chr3	120004183	120004184	-	0	NA	Intergenic	CpG	41041	NM_153002	165829	Hs.333358	NM_001168271	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
chr19.34538910.+	chr19	34538910	34538911	+	0	NA	Intergenic	AluYc|SINE|Alu	-124442	NM_015578	26065	Hs.744009	NM_001114093	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	"LSM14A, SCD6 homolog A (S. cerevisiae)"	protein-coding
chr1.183257551.+	chr1	183257551	183257552	+	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	16458	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr2.230579345.-	chr2	230579345	230579346	-	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	59	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr18.11959920.+	chr18	11959920	11959921	+	0	NA	Intergenic	SVA_D|Other|Other	-21507	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr10.43950966.+	chr10	43950966	43950967	+	0	NA	"intron (NR_026693, intron 1 of 3)"	CpG	18392	NR_026693	642819	Hs.719657	NR_026693		ZNF487P	KRBO1|ZNF487	"zinc finger protein 487, pseudogene"	pseudo
chr12.118282876.-	chr12	118282876	118282877	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123152	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr22.34378901.+	chr22	34378901	34378902	+	0	NA	Intergenic	AluSx1|SINE|Alu	-62485	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr14.101693626.-	chr14	101693626	101693627	-	0	NA	Intergenic	Intergenic	-157378	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr7.148395776.+	chr7	148395776	148395777	+	0	NA	promoter-TSS (NM_003592)	promoter-TSS (NM_003592)	-157	NM_003592	8454	Hs.146806	NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
chr6.21897105.-	chr6	21897105	21897106	-	0	NA	"intron (NR_015410, intron 4 of 11)"	AluSq2|SINE|Alu	-230430	NR_015410	401237	Hs.712707	NR_015410		LINC00340	-	long intergenic non-protein coding RNA 340	miscRNA
chr7.56888214.+	chr7	56888214	56888215	+	0	NA	Intergenic	Intergenic	61625	NR_038450	100130849	Hs.568145	NR_038450	ENSG00000233437	LOC100130849	-	"phosphorylase kinase, gamma 1 (muscle) pseudogene"	pseudo
chrX.20694393.-	chrX	20694393	20694394	-	0	NA	Intergenic	AluY|SINE|Alu	409643	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr16.88760005.+	chr16	88760005	88760006	+	0	NA	Intergenic	Intergenic	-7123	NM_178310	333929	Hs.673548	NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail homolog 3 (Drosophila)	protein-coding
chr5.34007928.-	chr5	34007928	34007929	-	0	NA	"exon (NM_203382, exon 1 of 4)"	"exon (NM_203382, exon 1 of 4)"	-292	NM_001167595	23600	Hs.508343	NM_001167595	ENSG00000242110	AMACR	AMACRD|CBAS4|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
chr7.130728754.-	chr7	130728754	130728755	-	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSp|SINE|Alu	-63035	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr17.1389458.-	chr17	1389458	1389459	-	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	407	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr2.15359864.-	chr2	15359864	15359865	-	0	NA	"intron (NM_015909, intron 47 of 51)"	SVA_E|Other|Other	-341608	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
chr15.76627326.+	chr15	76627326	76627327	+	0	NA	Intergenic	AluSg|SINE|Alu	-1821	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr12.14720439.+	chr12	14720439	14720440	+	0	NA	"intron (NM_024829, intron 1 of 10)"	CpG	352	NM_024829	79887	Hs.131933	NM_024829		PLBD1	-	phospholipase B domain containing 1	protein-coding
chr6.34857488.-	chr6	34857488	34857489	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-450	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr19.1919073.+	chr19	1919073	1919074	+	0	NA	"intron (NM_079834, intron 5 of 6)"	CpG-12334	13700	NM_079834	113178	Hs.144980	NM_079834	ENSG00000227500	SCAMP4	SCAMP-4	secretory carrier membrane protein 4	protein-coding
chr10.74000512.+	chr10	74000512	74000513	+	0	NA	Intergenic	AluJr4|SINE|Alu	-23620	NR_045564	51008	Hs.500007	NM_001198798		ASCC1	ASC1p50|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
chr22.38531086.+	chr22	38531086	38531087	+	0	NA	"exon (NM_001199562, exon 6 of 16)"	"exon (NM_001199562, exon 6 of 16)"	-24410	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr16.23724712.-	chr16	23724712	23724713	-	0	NA	"5' UTR (NM_033266, exon 1 of 22)"	"5' UTR (NM_033266, exon 1 of 22)"	-109	NM_033266	10595	Hs.592041	NM_033266	ENSG00000134398	ERN2	IRE1-BETA|IRE1b	endoplasmic reticulum to nucleus signaling 2	protein-coding
chrX.132399696.-	chrX	132399696	132399697	-	0	NA	Intergenic	Intergenic	47320	NM_016521	51270	Hs.142908	NM_016521	ENSG00000183434	TFDP3	CT30|DP4|HCA661	"transcription factor Dp family, member 3"	protein-coding
chr22.34296783.+	chr22	34296783	34296784	+	0	NA	"intron (NM_004737, intron 1 of 15)"	AluSx|SINE|Alu	19633	NM_133642	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr2.230579674.+	chr2	230579674	230579675	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-388	NM_139072	92737	Hs.234074	NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
chr11.7603350.-	chr11	7603350	7603351	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15067	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr1.217394792.+	chr1	217394792	217394793	+	0	NA	Intergenic	AluSq2|SINE|Alu	-83695	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr22.36220015.-	chr22	36220015	36220016	-	0	NA	"intron (NM_001082579, intron 2 of 13)"	AluSx3|SINE|Alu	-16615	NM_001082577	23543	Hs.282998	NM_001031695	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	"RNA binding protein, fox-1 homolog (C. elegans) 2"	protein-coding
chr12.100804212.-	chr12	100804212	100804213	-	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	-53355	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr5.34656687.+	chr5	34656687	34656688	+	0	NA	promoter-TSS (NM_001145520)	promoter-TSS (NM_001145520)	91	NM_001145520	26064	Hs.431400	NM_001145520	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
chr19.19720121.-	chr19	19720121	19720122	-	0	NA	"intron (NR_038198, intron 1 of 7)"	AluSp|SINE|Alu	-9604	NM_025245	80714	Hs.466257	NM_025245	ENSG00000105717	PBX4	-	pre-B-cell leukemia homeobox 4	protein-coding
chr10.104255224.-	chr10	104255224	104255225	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7288	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr1.109797921.-	chr1	109797921	109797922	-	0	NA	"intron (NM_001408, intron 1 of 33)"	"intron (NM_001408, intron 1 of 33)"	-5280	NM_001408	1952	Hs.57652	NM_001408	ENSG00000143126	CELSR2	CDHF10|EGFL2|Flamingo1|MEGF3	"cadherin, EGF LAG seven-pass G-type receptor 2"	protein-coding
chr4.37548308.-	chr4	37548308	37548309	-	0	NA	"intron (NM_001104629, intron 1 of 3)"	HERVE_a-int|LTR|ERV1	37547	NM_018302	55286	Hs.107527	NM_001104629		C4orf19	-	chromosome 4 open reading frame 19	protein-coding
chr14.105242484.-	chr14	105242484	105242485	-	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	-17454	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr1.28703597.+	chr1	28703597	28703598	+	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	7504	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr2.91776263.-	chr2	91776263	91776264	-	0	NA	Intergenic	Intergenic	-71712	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr19.4065718.-	chr19	4065718	4065719	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1098	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr12.112407432.-	chr12	112407432	112407433	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43591	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr8.6644906.+	chr8	6644906	6644907	+	0	NA	Intergenic	AluY|SINE|Alu	-42145	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr10.116501258.+	chr10	116501258	116501259	+	0	NA	Intergenic	AluY|SINE|Alu	-56844	NM_001003407	3983	Hs.593868	NM_001003407	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
chr9.28865663.+	chr9	28865663	28865664	+	0	NA	"intron (NM_001258282, intron 2 of 6)"	AluSc8|SINE|Alu	-1959	NR_030597	100126310		NR_030597	ENSG00000215966	MIR876	MIRN876|hsa-mir-876	microRNA 876	miscRNA
chr6.65337695.-	chr6	65337695	65337696	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673616	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr5.1251882.-	chr5	1251882	1251883	-	0	NA	Intergenic	Intergenic	-26412	NM_182632	348932	Hs.213284	NM_182632	ENSG00000164363	SLC6A18	Xtrp2	"solute carrier family 6, member 18"	protein-coding
chr21.37681321.-	chr21	37681321	37681322	-	0	NA	Intergenic	AluSx1|SINE|Alu	11166	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
chr7.5396300.+	chr7	5396300	5396301	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66877	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr14.23706422.+	chr14	23706422	23706423	+	0	NA	Intergenic	AluSz|SINE|Alu	48887	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr19.19932517.+	chr19	19932517	19932518	+	0	NA	promoter-TSS (NM_001145404)	promoter-TSS (NM_001145404)	43	NM_001145404	440515	Hs.351906	NM_001145405		ZNF506	-	zinc finger protein 506	protein-coding
chr18.41408397.+	chr18	41408397	41408398	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550782	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr5.1009209.-	chr5	1009209	1009210	-	0	NA	"intron (NM_001271082, intron 1 of 10)"	CpG	-132	NM_001271082	85409	Hs.240951	NM_001271082	ENSG00000145506	NKD2	Naked2	naked cuticle homolog 2 (Drosophila)	protein-coding
chr14.35800644.-	chr14	35800644	35800645	-	0	NA	Intergenic	AluSx|SINE|Alu	-39070	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	"proteasome (prosome, macropain) subunit, alpha type, 6"	protein-coding
chr17.42774494.+	chr17	42774494	42774495	+	0	NA	Intergenic	AluY|SINE|Alu	-7329	NM_144609	124808	Hs.579115	NM_001099225	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
chr6.7878904.+	chr6	7878904	7878905	+	0	NA	"intron (NM_001718, intron 4 of 6)"	"intron (NM_001718, intron 4 of 6)"	31406	NM_001145549	81567	Hs.150837	NM_001145549	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
chr3.180597044.-	chr3	180597044	180597045	-	0	NA	Intergenic	AluSx3|SINE|Alu	33190	NM_005087	8087	Hs.478407	NM_001013438		FXR1	FXR1P	"fragile X mental retardation, autosomal homolog 1"	protein-coding
chr2.241363394.+	chr2	241363394	241363395	+	0	NA	Intergenic	Intergenic	-11721	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr10.99397984.-	chr10	99397984	99397985	-	0	NA	Intergenic	AluSq|SINE|Alu	2459	NM_018425	55361	Hs.25300	NM_018425	ENSG00000155252	PI4K2A	PI4KII|PIK42A|RP11-548K23.6	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
chr11.33110421.+	chr11	33110421	33110422	+	0	NA	"intron (NM_001326, intron 17 of 20)"	AluJb|SINE|Alu	12725	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr5.14460471.-	chr5	14460471	14460472	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121420	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr6.119546109.-	chr6	119546109	119546110	-	0	NA	"intron (NM_005907, intron 6 of 12)"	AluSg|SINE|Alu	75751	NM_001100411	79632	Hs.443789	NM_001100411	ENSG00000111879	FAM184A	C6orf60	"family with sequence similarity 184, member A"	protein-coding
chr2.66673629.-	chr2	66673629	66673630	-	0	NA	"intron (NM_002398, intron 6 of 12)"	CpG	-11097	NM_002398	4211	Hs.603755	NM_002398	ENSG00000143995	MEIS1	-	Meis homeobox 1	protein-coding
chr19.39810730.+	chr19	39810730	39810731	+	0	NA	Intergenic	Intergenic	-4754	NM_020862	57622	Hs.97860	NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
chr17.47735155.-	chr17	47735155	47735156	-	0	NA	"intron (NM_001007229, intron 1 of 10)"	AluSc8|SINE|Alu	-20370	NM_001007229	8405	Hs.740407	NM_001007226	ENSG00000121067	SPOP	BTBD32|TEF2	speckle-type POZ protein	protein-coding
chr3.48028077.-	chr3	48028077	48028078	-	0	NA	"intron (NM_002375, intron 2 of 18)"	AluSz6|SINE|Alu	-102692	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr5.57859857.-	chr5	57859857	57859858	-	0	NA	Intergenic	SVA_A|Other|Other	19082	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr21.45243629.-	chr21	45243629	45243630	-	0	NA	Intergenic	Intergenic	11181	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr1.179441212.-	chr1	179441212	179441213	-	0	NA	"intron (NR_073544, intron 16 of 25)"	AluSx3|SINE|Alu	-103872	NM_014625	7827	Hs.412710	NM_014625	ENSG00000116218	NPHS2	PDCN|SRN1	"nephrosis 2, idiopathic, steroid-resistant (podocin)"	protein-coding
chr21.31598695.+	chr21	31598695	31598696	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10226	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr4.149686299.+	chr4	149686299	149686300	+	0	NA	Intergenic	AluJb|SINE|Alu	-322627	NM_001166104	4306	Hs.163924	NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	"nuclear receptor subfamily 3, group C, member 2"	protein-coding
chr8.17013861.+	chr8	17013861	17013862	+	0	NA	promoter-TSS (NM_016353)	promoter-TSS (NM_016353)	25	NM_016353	51201	Hs.744097	NM_016353		ZDHHC2	DHHC2|ZNF372	"zinc finger, DHHC-type containing 2"	protein-coding
chr8.120878163.+	chr8	120878163	120878164	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7737	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr2.114015912.-	chr2	114015912	114015913	-	0	NA	"intron (NR_015377, intron 3 of 5)"	"intron (NR_015377, intron 3 of 5)"	-20586	NM_013952	7849	Hs.469728	NM_003466	ENSG00000125618	PAX8	-	paired box 8	protein-coding
chr16.14151925.+	chr16	14151925	14151926	+	0	NA	Intergenic	Intergenic	-13271	NM_014048	57496	Hs.49143	NM_014048	ENSG00000186260	MKL2	MRTF-B|NPD001	MKL/myocardin-like 2	protein-coding
chr20.45935926.+	chr20	45935926	45935927	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11320	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr4.77348102.-	chr4	77348102	77348103	-	0	NA	Intergenic	AluY|SINE|Alu	8151	NM_020859	57619	Hs.702168	NM_020859	ENSG00000138771	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
chr7.821266.-	chr7	821266	821267	-	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	33928	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr20.57736418.+	chr20	57736418	57736419	+	0	NA	Intergenic	AluSx3|SINE|Alu	-29657	NM_178457	128611	Hs.473204	NM_178457	ENSG00000124203	ZNF831	C20orf174|dJ492J12.1	zinc finger protein 831	protein-coding
chr12.96314636.+	chr12	96314636	96314637	+	0	NA	"intron (NM_182496, intron 2 of 15)"	AluSp|SINE|Alu	21792	NM_182496	120935	Hs.210377	NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
chrX.53111579.-	chrX	53111579	53111580	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-37	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr13.108870654.-	chr13	108870654	108870655	-	0	NA	promoter-TSS (NM_001098268)	promoter-TSS (NM_001098268)	-62	NM_001098268	3981	Hs.166091	NM_001098268	ENSG00000174405	LIG4	-	"ligase IV, DNA, ATP-dependent"	protein-coding
chr8.101661664.+	chr8	101661664	101661665	+	0	NA	"intron (NM_152628, intron 1 of 13)"	"intron (NM_152628, intron 1 of 13)"	229	NM_152628	169166	Hs.567758	NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
chr5.168300363.-	chr5	168300363	168300364	-	0	NA	"intron (NM_003062, intron 5 of 35)"	AluJb|SINE|Alu	105103	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	miscRNA
chr10.104238495.+	chr10	104238495	104238496	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17325	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr13.111280685.+	chr13	111280685	111280686	+	0	NA	"intron (NR_040103, intron 5 of 9)"	"intron (NR_040103, intron 5 of 9)"	12754	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr9.131639076.+	chr9	131639076	131639077	+	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	5278	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr6.18239282.-	chr6	18239282	18239283	-	0	NA	"intron (NM_001134709, intron 6 of 9)"	AluSp|SINE|Alu	-25517	NM_003472	7913	Hs.484813	NM_001134709	ENSG00000124795	DEK	D6S231E	DEK oncogene	protein-coding
chr14.80915489.-	chr14	80915489	80915490	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218092	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr8.10588140.-	chr8	10588140	10588141	-	0	NA	promoter-TSS (NM_031439)	promoter-TSS (NM_031439)	118	NM_031439	83595	Hs.709543	NM_031439	ENSG00000171056	SOX7	-	SRY (sex determining region Y)-box 7	protein-coding
chr12.43781864.-	chr12	43781864	43781865	-	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	-163860	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr10.76620844.-	chr10	76620844	76620845	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34673	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr7.148982548.+	chr7	148982548	148982549	+	0	NA	TTS (NM_001195220)	TTS (NM_001195220)	176	NR_036573	155060	Hs.490512	NR_036573	ENSG00000244560	LOC155060	-	AI894139 pseudogene	pseudo
chr9.139028946.-	chr9	139028946	139028947	-	0	NA	Intergenic	MIRb|SINE|MIR	18215	NM_152833	90120	Hs.287411	NM_001256526	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
chr8.120878159.-	chr8	120878159	120878160	-	0	NA	Intergenic	AluSx1|SINE|Alu	7741	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr2.34289827.+	chr2	34289827	34289828	+	0	NA	Intergenic	AluSz|SINE|Alu	-336543	NR_003143	151325	Hs.528847	NM_207329	ENSG00000239649	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
chr17.65335407.-	chr17	65335407	65335408	-	0	NA	Intergenic	AluSx|SINE|Alu	-27314	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr12.53658207.-	chr12	53658207	53658208	-	0	NA	Intergenic	AluY|SINE|Alu	3876	NM_012291	9700	Hs.153479	NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies homolog 1 (S. cerevisiae)	protein-coding
chr9.133788054.+	chr9	133788054	133788055	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18829	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr2.213546706.-	chr2	213546706	213546707	-	0	NA	Intergenic	AluSc8|SINE|Alu	143354	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr22.18261508.-	chr22	18261508	18261509	-	0	NA	Intergenic	Intergenic	4077	NM_001244567	637	Hs.591054	NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
chr9.38829872.+	chr9	38829872	38829873	+	0	NA	Intergenic	AluY|SINE|Alu	208787	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr18.34669432.+	chr18	34669432	34669433	+	0	NA	"intron (NM_020776, intron 7 of 9)"	AluSx|SINE|Alu	-260253	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr2.202898648.-	chr2	202898648	202898649	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	662	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr7.56026668.-	chr7	56026668	56026669	-	0	NA	Intergenic	AluSg|SINE|Alu	5602	NM_001202469	2631	Hs.591069	NM_001202469	ENSG00000146729	GBAS	NIPSNAP2	glioblastoma amplified sequence	protein-coding
chr8.144356500.+	chr8	144356500	144356501	+	0	NA	"intron (NM_138465, intron 2 of 3)"	"intron (NM_138465, intron 2 of 3)"	6893	NM_138465	2738	Hs.400533	NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
chr3.14349503.+	chr3	14349503	14349504	+	0	NA	Intergenic	Intergenic	-94603	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr3.1144526.+	chr3	1144526	1144527	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9897	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr19.59046086.+	chr19	59046086	59046087	+	0	NA	Intergenic	AluY|SINE|Alu	-9750	NM_005762	10155	Hs.467408	NM_005762	ENSG00000130726	TRIM28	KAP1|RNF96|TF1B|TIF1B	tripartite motif containing 28	protein-coding
chr7.1474513.+	chr7	1474513	1474514	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24596	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr13.19518219.-	chr13	19518219	19518220	-	0	NA	Intergenic	GSATX|Satellite|centr	64180	NR_026852	348021	Hs.314114	NR_026852	ENSG00000232685	LINC00442	-	long intergenic non-protein coding RNA 442	miscRNA
chr11.46730233.+	chr11	46730233	46730234	+	0	NA	Intergenic	AluSz|SINE|Alu	7589	NM_001184751	79797	Hs.656931	NM_001184751	ENSG00000175213	ZNF408	-	zinc finger protein 408	protein-coding
chr5.74566604.+	chr5	74566604	74566605	+	0	NA	Intergenic	SVA_F|Other|Other	-33901	NM_001164443	256006	Hs.482533	NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
chr8.30590276.+	chr8	30590276	30590277	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4790	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr1.181058687.+	chr1	181058687	181058688	+	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	1049	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr2.202046029.-	chr2	202046029	202046030	-	0	NA	Intergenic	AluSz|SINE|Alu	1592	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr16.77246833.-	chr16	77246833	77246834	-	0	NA	"3' UTR (NM_001129979, exon 11 of 11)"	"3' UTR (NM_001129979, exon 11 of 11)"	-13484	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chrX.122993624.-	chrX	122993624	122993625	-	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	38	NM_001204401	331	Hs.736565	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
chr3.71746093.+	chr3	71746093	71746094	+	0	NA	"intron (NM_001134650, intron 4 of 7)"	AluY|SINE|Alu	28433	NM_001134651	317649	Hs.581355	NM_001134649	ENSG00000163412	EIF4E3	-	eukaryotic translation initiation factor 4E family member 3	protein-coding
chr16.66785164.-	chr16	66785164	66785165	-	0	NA	"intron (NM_006141, intron 2 of 12)"	CpG	-361	NM_006141	1783	Hs.369068	NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	"dynein, cytoplasmic 1, light intermediate chain 2"	protein-coding
chr9.115480216.-	chr9	115480216	115480217	-	0	NA	"intron (NM_021218, intron 1 of 4)"	CpG	-171	NM_021218	58493	Hs.658575	NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
chr13.82029617.-	chr13	82029617	82029618	-	0	NA	Intergenic	AluSq2|SINE|Alu	1114531	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr1.220909500.+	chr1	220909500	220909501	+	0	NA	Intergenic	AluSc|SINE|Alu	-12176	NM_017898	54996	Hs.369042	NM_017898		Mar-02	MOSC2|RP11-270A6.1	mitochondrial amidoxime reducing component 2	protein-coding
chr19.48888435.-	chr19	48888435	48888436	-	0	NA	"intron (NM_006801, intron 3 of 4)"	AluSx1|SINE|Alu	-6375	NM_006801	10945	Hs.515515	NM_006801	ENSG00000105438	KDELR1	ERD2|ERD2.1|HDEL|PM23	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding
chr12.113494398.-	chr12	113494398	113494399	-	0	NA	Intergenic	CpG	1264	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr3.29051449.-	chr3	29051449	29051450	-	0	NA	Intergenic	AluSc8|SINE|Alu	271354	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr9.32897673.+	chr9	32897673	32897674	+	0	NA	Intergenic	AluY|SINE|Alu	103901	NR_036579	54840	Hs.20158	NM_001195248	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
chr9.34070256.-	chr9	34070256	34070257	-	0	NA	Intergenic	AluSz|SINE|Alu	21309	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr12.120959439.-	chr12	120959439	120959440	-	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	-7525	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr18.60659274.-	chr18	60659274	60659275	-	0	NA	Intergenic	Intergenic	-276602	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
chr5.171395335.+	chr5	171395335	171395336	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38542	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr7.2943520.+	chr7	2943520	2943521	+	0	NA	Intergenic	Intergenic	-59561	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr13.114899245.-	chr13	114899245	114899246	-	0	NA	Intergenic	Intergenic	1150	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.19560985.+	chr2	19560985	19560986	+	0	NA	Intergenic	CpG	-2613	NM_145260	130497	Hs.123933	NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related 1 (Drosophila)	protein-coding
chr21.45684322.-	chr21	45684322	45684323	-	0	NA	Intergenic	AluY|SINE|Alu	2223	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr2.58008329.+	chr2	58008329	58008330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-265448	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr17.75767626.+	chr17	75767626	75767627	+	0	NA	Intergenic	Intergenic	112543	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	miscRNA
chr1.110881049.-	chr1	110881049	110881050	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-744	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr8.144360652.+	chr8	144360652	144360653	+	0	NA	Intergenic	Intergenic	11045	NM_138465	2738	Hs.400533	NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
chr7.1587794.+	chr7	1587794	1587795	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8272	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr9.16855820.-	chr9	16855820	16855821	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14966	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr22.41521458.-	chr22	41521458	41521459	-	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	-32844	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr9.719248.-	chr9	719248	719249	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12442	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr4.44679374.-	chr4	44679374	44679375	-	0	NA	Intergenic	AluSg|SINE|Alu	1059	NM_021927	60558	Hs.546419	NM_021927	ENSG00000151806	GUF1	EF-4	GUF1 GTPase homolog (S. cerevisiae)	protein-coding
chr2.238760442.+	chr2	238760442	238760443	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7745	NM_005855	10267	Hs.471783	NM_005855	ENSG00000132329	RAMP1	-	receptor (G protein-coupled) activity modifying protein 1	protein-coding
chr2.198274046.-	chr2	198274046	198274047	-	0	NA	"intron (NM_012433, intron 7 of 24)"	AluSp|SINE|Alu	-25725	NM_001005526	23451	Hs.632554	NM_001005526	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	"splicing factor 3b, subunit 1, 155kDa"	protein-coding
chr15.72816638.-	chr15	72816638	72816639	-	0	NA	"intron (NM_005744, intron 2 of 13)"	AluSz|SINE|Alu	-49971	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	"ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)"	protein-coding
chr2.224724714.-	chr2	224724714	224724715	-	0	NA	Intergenic	AluSp|SINE|Alu	22395	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr5.139145005.-	chr5	139145005	139145006	-	0	NA	Intergenic	Intergenic	30401	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
chr8.120878164.-	chr8	120878164	120878165	-	0	NA	Intergenic	AluSx1|SINE|Alu	7736	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr16.28435264.+	chr16	28435264	28435265	+	0	NA	"intron (NM_001199142, intron 1 of 20).2"	AluY|SINE|Alu	2511	NM_001199142	8663	Hs.567374	NM_001037808	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	"eukaryotic translation initiation factor 3, subunit C"	protein-coding
chr1.1357914.+	chr1	1357914	1357915	+	0	NA	Intergenic	LTR75|LTR|ERVL	-1090	NM_001243536	441869	Hs.381222	NM_001145210	ENSG00000235098	ANKRD65	-	ankyrin repeat domain 65	protein-coding
chr21.39230444.-	chr21	39230444	39230445	-	0	NA	"intron (NM_002240, intron 1 of 3)"	AluY|SINE|Alu	-58297	NM_002240	3763	Hs.741904	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	"potassium inwardly-rectifying channel, subfamily J, member 6"	protein-coding
chr15.41539525.+	chr15	41539525	41539526	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16088	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr12.121338291.-	chr12	121338291	121338292	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	-3864	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr1.1175108.+	chr1	1175108	1175109	+	0	NA	Intergenic	Intergenic	6994	NM_001014980	388581	Hs.197613	NM_001014980	ENSG00000184163	FAM132A	C1QDC2|C1QTNF12|CTRP12	"family with sequence similarity 132, member A"	protein-coding
chr3.38106434.+	chr3	38106434	38106435	+	0	NA	"intron (NM_007335, intron 6 of 36)"	SVA_B|Other|Other	25738	NM_007337	9940	Hs.714499	NM_007335	ENSG00000008226	DLEC1	DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
chr5.171395331.+	chr5	171395331	171395332	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38546	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr2.190686805.+	chr2	190686805	190686806	+	0	NA	"intron (NM_001128143, intron 5 of 11)"	CpG	-37708	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr7.99156279.-	chr7	99156279	99156280	-	0	NA	promoter-TSS (NM_001085368)	promoter-TSS (NM_001085368)	169	NM_001009960	79027	Hs.599798	NM_001009958	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
chr19.11878169.-	chr19	11878169	11878170	-	0	NA	"intron (NM_152355, intron 1 of 3)"	CpG	-354	NM_152355	126068	Hs.675132	NM_152355	ENSG00000197044	ZNF441	-	zinc finger protein 441	protein-coding
chr1.27503605.+	chr1	27503605	27503606	+	0	NA	Intergenic	Intergenic	-21984	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr13.114803383.-	chr13	114803383	114803384	-	0	NA	"intron (NM_007368, intron 4 of 23)"	"intron (NM_007368, intron 4 of 23)"	-94712	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.46526500.+	chr2	46526500	46526501	+	0	NA	"intron (NM_001430, intron 1 of 15)"	CpG	1959	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
chr7.62939973.-	chr7	62939973	62939974	-	0	NA	Intergenic	AluYf4|SINE|Alu	80554	NR_028349	100287834	Hs.742597	NR_028349		LOC100287834	-	uncharacterized LOC100287834	miscRNA
chr19.1115960.+	chr19	1115960	1115961	+	0	NA	"intron (NM_014963, intron 17 of 31)"	"intron (NM_014963, intron 17 of 31)"	11311	NM_001039848	2879	Hs.433951	NM_001039847	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
chr10.89762158.+	chr10	89762158	89762159	+	0	NA	Intergenic	AluSq2|SINE|Alu	138963	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
chr16.12210423.-	chr16	12210423	12210424	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139821	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr16.29422144.-	chr16	29422144	29422145	-	0	NA	Intergenic	AluSx|SINE|Alu	38522	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr10.59351295.-	chr10	59351295	59351296	-	0	NA	Intergenic	AluY|SINE|Alu	286976	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr20.37035941.+	chr20	37035941	37035942	+	0	NA	Intergenic	SVA_B|Other|Other	18037	NR_002910	26776	Hs.743872	NR_002910	ENSG00000201416	SNORA71B	RNU71B|U71b	"small nucleolar RNA, H/ACA box 71B"	snoRNA
chr2.96149439.-	chr2	96149439	96149440	-	0	NA	"intron (NM_001164464, intron 1 of 6)"	AluY|SINE|Alu	-1040	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
chr9.121858999.+	chr9	121858999	121859000	+	0	NA	Intergenic	AluSc|SINE|Alu	272740	NM_014618	1620	Hs.532316	NM_014618	ENSG00000078725	DBC1	BRINP1|DBCCR1|FAM5A	deleted in bladder cancer 1	protein-coding
chr7.124427237.-	chr7	124427237	124427238	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3627	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr10.99397980.-	chr10	99397980	99397981	-	0	NA	Intergenic	AluSq|SINE|Alu	2463	NM_018425	55361	Hs.25300	NM_018425	ENSG00000155252	PI4K2A	PI4KII|PIK42A|RP11-548K23.6	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
chr22.31491557.-	chr22	31491557	31491558	-	0	NA	"exon (NM_001207017, exon 14 of 21)"	"exon (NM_001207017, exon 14 of 21)"	-10575	NM_001207018	6525	Hs.149098	NM_001207017	ENSG00000183963	SMTN	-	smoothelin	protein-coding
chr2.11541682.+	chr2	11541682	11541683	+	0	NA	"intron (NR_047499, intron 2 of 2)"	AluY|SINE|Alu	7575	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	miscRNA
chrX.103014815.-	chrX	103014815	103014816	-	0	NA	Intergenic	AluY|SINE|Alu	16624	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr2.131099861.+	chr2	131099861	131099862	+	0	NA	promoter-TSS (NM_032357)	promoter-TSS (NM_032357)	61	NM_032357	84317	Hs.104203	NM_032357	ENSG00000136710	CCDC115	ccp1	coiled-coil domain containing 115	protein-coding
chr1.32560000.+	chr1	32560000	32560001	+	0	NA	"intron (NM_018056, intron 6 of 8)"	AluSx4|SINE|Alu	-13644	NM_012316	23633	Hs.711019	NM_012316	ENSG00000025800	KPNA6	IPOA7|KPNA7	karyopherin alpha 6 (importin alpha 7)	protein-coding
chr9.113201944.-	chr9	113201944	113201945	-	0	NA	"intron (NM_153366, intron 27 of 47)"	AluSq|SINE|Alu	101819	NM_001003936	255220	Hs.147064	NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
chr4.138974450.+	chr4	138974450	138974451	+	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	-35718	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr3.82554725.-	chr3	82554725	82554726	-	0	NA	Intergenic	MER52A|LTR|ERV1	743775	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr1.21893072.-	chr1	21893072	21893073	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57214	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr2.112443493.-	chr2	112443493	112443494	-	0	NA	Intergenic	AluY|SINE|Alu	190801	NR_024373	541471	Hs.562920	NR_015395	ENSG00000172965	LOC541471	-	uncharacterized LOC541471	miscRNA
chr11.69451963.-	chr11	69451963	69451964	-	0	NA	Intergenic	CpG	3910	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
chr22.51142876.+	chr22	51142876	51142877	+	0	NA	"intron (NM_033517, intron 14 of 21)"	CpG	29806	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr2.242530371.-	chr2	242530371	242530372	-	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	-26545	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr16.4835197.-	chr16	4835197	4835198	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3201	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr11.64138384.+	chr11	64138384	64138385	+	0	NA	"intron (NM_003942, intron 16 of 16)"	AluSg|SINE|Alu	2310	NR_031602	100302280		NR_031602		MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	miscRNA
chr17.79427797.-	chr17	79427797	79427798	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9583	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr5.149844045.-	chr5	149844045	149844046	-	0	NA	Intergenic	MIRc|SINE|MIR	14726	NM_001025070	6208	Hs.381126	NM_001025070	ENSG00000164587	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
chr6.125622772.-	chr6	125622772	125622773	-	0	NA	"intron (NM_016063, intron 1 of 5)"	CpG	-510	NM_016063	51020	Hs.32826	NM_016063	ENSG00000111906	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
chr19.18057800.+	chr19	18057800	18057801	+	0	NA	Intergenic	AluSx|SINE|Alu	-4311	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr19.54151515.+	chr19	54151515	54151516	+	0	NA	Intergenic	CpG	16205	NM_001012728	503834	Hs.579941	NM_001012728	ENSG00000204595	DPRX	-	divergent-paired related homeobox	protein-coding
chr16.23561921.+	chr16	23561921	23561922	+	0	NA	"intron (NR_003501, intron 2 of 9)"	AluY|SINE|Alu	6775	NR_003501	124454	Hs.620541	NM_001083614	ENSG00000103356	EARS2	COXPD12|MSE1	"glutamyl-tRNA synthetase 2, mitochondrial"	protein-coding
chr4.48016929.-	chr4	48016929	48016930	-	0	NA	Intergenic	AluY|SINE|Alu	1862	NM_207330	152519	Hs.134190	NM_207330		NIPAL1	NPAL1	NIPA-like domain containing 1	protein-coding
chr17.7561729.-	chr17	7561729	7561730	-	0	NA	TTS (NM_001678)	TTS (NM_001678)	-7475	NM_001678	482	Hs.643540	NM_001678	ENSG00000129244	ATP1B2	AMOG	"ATPase, Na+/K+ transporting, beta 2 polypeptide"	protein-coding
chr16.67232966.-	chr16	67232966	67232967	-	0	NA	promoter-TSS (NM_024712)	promoter-TSS (NM_024712)	62	NM_024712	79767	Hs.377416	NM_024712	ENSG00000102890	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
chr14.64976418.-	chr14	64976418	64976419	-	0	NA	"intron (NM_014950, intron 1 of 2)"	AluY|SINE|Alu	-5126	NM_001123329	22890	Hs.605143	NM_001123329	ENSG00000126804	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
chr4.103422391.+	chr4	103422391	103422392	+	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-95	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr11.68303178.+	chr11	68303178	68303179	+	0	NA	"intron (NM_001164164, intron 3 of 22)"	AluSz|SINE|Alu	74992	NM_018312	55291	Hs.503022	NM_001164160	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	"protein phosphatase 6, regulatory subunit 3"	protein-coding
chr16.31021463.-	chr16	31021463	31021464	-	0	NA	"intron (NM_052874, intron 1 of 9)"	"intron (NM_052874, intron 1 of 9)"	-366	NM_052874	112755	Hs.542230	NM_052874	ENSG00000099365	STX1B	STX1B1|STX1B2	syntaxin 1B	protein-coding
chr8.101594938.+	chr8	101594938	101594939	+	0	NA	"intron (NM_152628, intron 12 of 13)"	AluY|SINE|Alu	-22924	NM_001270377	157567	Hs.744045	NM_001270377	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
chr22.18131944.+	chr22	18131944	18131945	+	0	NA	"intron (NM_001270730, intron 1 of 4)"	AluSx|SINE|Alu	-6484	NR_073068	23786	Hs.631672	NM_001270726	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chr3.134516302.+	chr3	134516302	134516303	+	0	NA	"intron (NM_004441, intron 1 of 15)"	"intron (NM_004441, intron 1 of 15)"	2203	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
chr19.8124739.+	chr19	8124739	8124740	+	0	NA	"intron (NM_001201359, intron 5 of 5)"	AluY|SINE|Alu	7093	NM_005624	6370	Hs.310511	NM_001201359	ENSG00000131142	CCL25	Ckb15|SCYA25|TECK	chemokine (C-C motif) ligand 25	protein-coding
chr2.43253972.+	chr2	43253972	43253973	+	0	NA	Intergenic	Intergenic	199773	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr5.127873822.+	chr5	127873822	127873823	+	0	NA	promoter-TSS (NM_001999)	promoter-TSS (NM_001999)	-87	NM_001999	2201	Hs.519294	NM_001999	ENSG00000138829	FBN2	CCA|DA9	fibrillin 2	protein-coding
chr7.5396346.+	chr7	5396346	5396347	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	66831	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr1.111150261.+	chr1	111150261	111150262	+	0	NA	"intron (NM_001204269, intron 1 of 4)"	"intron (NM_001204269, intron 1 of 4)"	-1286	NM_004974	3737	Hs.731191	NM_001204269	ENSG00000177301	KCNA2	HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	"potassium voltage-gated channel, shaker-related subfamily, member 2"	protein-coding
chr1.9832293.-	chr1	9832293	9832294	-	0	NA	"intron (NM_001009566, intron 2 of 18)"	AluY|SINE|Alu	-52257	NM_001009566	22883	Hs.29665	NM_001009566	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
chr17.79674894.+	chr17	79674894	79674895	+	0	NA	TTS (NM_002949)	TTS (NM_002949)	-4372	NM_012140	1468	Hs.548187	NM_001270888	ENSG00000183048	SLC25A10	DIC	"solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10"	protein-coding
chr5.125759126.+	chr5	125759126	125759127	+	0	NA	"5' UTR (NM_023927, exon 1 of 14)"	"5' UTR (NM_023927, exon 1 of 14)"	257	NM_023927	65983	Hs.363558	NM_001146319	ENSG00000155324	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
chr17.17626201.-	chr17	17626201	17626202	-	0	NA	"intron (NM_030665, intron 1 of 5)"	CpG	-41414	NM_030665	10743	Hs.727059	NM_030665	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
chr9.127099242.+	chr9	127099242	127099243	+	0	NA	"intron (NM_001166170, intron 7 of 9)"	AluSx|SINE|Alu	-16510	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	miscRNA
chr11.119187967.+	chr11	119187967	119187968	+	0	NA	promoter-TSS (NM_006500)	promoter-TSS (NM_006500)	-127	NM_006500	4162	Hs.599039	NM_006500	ENSG00000076706	MCAM	CD146|MUC18	melanoma cell adhesion molecule	protein-coding
chr16.8974129.+	chr16	8974129	8974130	+	0	NA	Intergenic	Intergenic	-11266	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr8.27695293.+	chr8	27695293	27695294	+	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	56	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr19.58175920.-	chr19	58175920	58175921	-	0	NA	Intergenic	CpG	4383	NM_152677	201516	Hs.469663	NM_152677	ENSG00000180532	ZSCAN4	ZNF494	zinc finger and SCAN domain containing 4	protein-coding
chr11.16894146.+	chr11	16894146	16894147	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133998	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr8.1771631.+	chr8	1771631	1771632	+	0	NA	promoter-TSS (NM_014629)	promoter-TSS (NM_014629)	-518	NM_014629	9639	Hs.98594	NM_014629	ENSG00000104728	ARHGEF10	GEF10	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding
chr2.131009784.+	chr2	131009784	131009785	+	0	NA	Intergenic	CpG	-53750	NM_207312	112714	Hs.433336	NM_207312	ENSG00000152086	TUBA3E	-	"tubulin, alpha 3e"	protein-coding
chr5.74566602.+	chr5	74566602	74566603	+	0	NA	Intergenic	SVA_F|Other|Other	-33899	NM_001164443	256006	Hs.482533	NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
chrY.9930524.+	chrY	9930524	9930525	+	0	NA	Intergenic	5S|rRNA|rRNA	182117	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr20.48770654.+	chr20	48770654	48770655	+	0	NA	promoter-TSS (NR_027889)	promoter-TSS (NR_027889)	-319	NM_199203	387522	Hs.420529	NM_199203	ENSG00000124208	TMEM189-UBE2V1	CROC-1B|CROC1B|KUA-UEV	TMEM189-UBE2V1 readthrough	protein-coding
chr1.32679405.-	chr1	32679405	32679406	-	0	NA	"intron (NM_001099434, intron 6 of 8)"	AluY|SINE|Alu	-4710	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
chr21.9827475.+	chr21	9827475	9827476	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	1272	NR_037458	100500815		NR_037458	ENSG00000264063	MIR3687	-	microRNA 3687	miscRNA
chr19.44489481.-	chr19	44489481	44489482	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1159	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr7.56109479.-	chr7	56109479	56109480	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9789	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr6.8388543.-	chr6	8388543	8388544	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47251	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr21.40124152.+	chr21	40124152	40124153	+	0	NA	promoter-TSS (NR_027067)	promoter-TSS (NR_027067)	29	NR_027067	400866	Hs.278704	NR_027065	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	miscRNA
chr14.100647477.+	chr14	100647477	100647478	+	0	NA	Intergenic	SVA_D|Other|Other	-21465	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	"delta(4)-desaturase, sphingolipid 2"	protein-coding
chr6.93408703.+	chr6	93408703	93408704	+	0	NA	Intergenic	AluY|SINE|Alu	720597	NM_004440	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK3|HEK11	EPH receptor A7	protein-coding
chr8.22594690.-	chr8	22594690	22594691	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43875	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr2.239058250.+	chr2	239058250	239058251	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10887	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chrX.40029600.-	chrX	40029600	40029601	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	AluSq|SINE|Alu	-6982	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr18.56438798.-	chr18	56438798	56438799	-	0	NA	Intergenic	AluSz|SINE|Alu	91263	NM_018181	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
chr2.74880314.-	chr2	74880314	74880315	-	0	NA	Intergenic	AluYg6|SINE|Alu	1041	NM_004263	10505	Hs.25887	NM_001271661	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F"	protein-coding
chr7.6454041.-	chr7	6454041	6454042	-	0	NA	"intron (NM_139179, intron 11 of 14)"	AluJb|SINE|Alu	-33602	NM_139179	221955	Hs.487498	NM_001142936	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	"diacylglycerol lipase, beta"	protein-coding
chr6.65337806.+	chr6	65337806	65337807	+	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	-673505	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr16.88000381.+	chr16	88000381	88000382	+	0	NA	"intron (NM_001173542, intron 1 of 12)"	"intron (NM_001173542, intron 1 of 12)"	-3243	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr16.3109379.+	chr16	3109379	3109380	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5934	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr3.95669703.-	chr3	95669703	95669704	-	0	NA	Intergenic	HERV9-int|LTR|ERV1	267666	NR_077228	100287639	Hs.591320	NR_077228		LOC100287639	-	"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene"	pseudo
chr20.60814216.-	chr20	60814216	60814217	-	0	NA	"intron (NM_014835, intron 1 of 13)"	CpG	-636	NM_144498	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	ORP-2|ORP2	oxysterol binding protein-like 2	protein-coding
chr9.133878585.-	chr9	133878585	133878586	-	0	NA	Intergenic	AluY|SINE|Alu	5919	NM_006059	10319	Hs.201805	NM_006059	ENSG00000050555	LAMC3	OCCM	"laminin, gamma 3"	protein-coding
chr3.9429663.+	chr3	9429663	9429664	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9511	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr10.45240359.-	chr10	45240359	45240360	-	0	NA	Intergenic	AluSx1|SINE|Alu	166405	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr16.1815014.+	chr16	1815014	1815015	+	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	6696	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr1.218165380.-	chr1	218165380	218165381	-	0	NA	Intergenic	AluSq|SINE|Alu	-99138	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr7.1001911.+	chr7	1001911	1001912	+	0	NA	Intergenic	Intergenic	-7622	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr7.1587815.+	chr7	1587815	1587816	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8251	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr1.110881114.+	chr1	110881114	110881115	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	679	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr1.200008909.+	chr1	200008909	200008910	+	0	NA	"exon (NM_205860, exon 2 of 8)"	"exon (NM_205860, exon 2 of 8)"	-3044	NM_001276464	2494	Hs.33446	NM_001276464	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	"nuclear receptor subfamily 5, group A, member 2"	protein-coding
chr4.160024149.+	chr4	160024149	160024150	+	0	NA	Intergenic	CpG	-25808	NR_039963	100616303		NR_039963		MIR3688-2	-	microRNA 3688-2	miscRNA
chr12.43208400.+	chr12	43208400	43208401	+	0	NA	Intergenic	AluY|SINE|Alu	-224828	NM_153026	144165	Hs.720221	NM_001144881	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
chr4.110481338.-	chr4	110481338	110481339	-	0	NA	promoter-TSS (NM_017918)	promoter-TSS (NM_017918)	17	NM_017918	55013	Hs.234149	NM_017918		CCDC109B	-	coiled-coil domain containing 109B	protein-coding
chr19.49186348.+	chr19	49186348	49186349	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10084	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr5.138847844.-	chr5	138847844	138847845	-	0	NA	Intergenic	AluY|SINE|Alu	5524	NM_001077693	641700	Hs.483538	NM_001077693		ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
chr19.41868046.-	chr19	41868046	41868047	-	0	NA	"intron (NM_030578, intron 2 of 3)"	AluYg6|SINE|Alu	1825	NM_001098825	641649	Hs.709417	NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6	transmembrane protein 91	protein-coding
chr6.43070147.+	chr6	43070147	43070148	+	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	25595	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr3.143771590.-	chr3	143771590	143771591	-	0	NA	Intergenic	AluSz6|SINE|Alu	-79423	NM_001134470	205428	Hs.288954	NM_001134470	ENSG00000181744	C3orf58	DIA1	chromosome 3 open reading frame 58	protein-coding
chr9.6858655.+	chr9	6858655	6858656	+	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	101014	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr20.20772503.+	chr20	20772503	20772504	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-79237	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	"Ral GTPase activating protein, alpha subunit 2 (catalytic)"	protein-coding
chr20.48100906.-	chr20	48100906	48100907	-	0	NA	Intergenic	CpG	1725	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr15.100514130.-	chr15	100514130	100514131	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	166998	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr8.104851162.+	chr8	104851162	104851163	+	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	19746	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr7.140185530.-	chr7	140185530	140185531	-	0	NA	Intergenic	FLAM_C|SINE|Alu	6161	NM_013446	23608	Hs.490347	NM_001145125	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
chr14.71374348.+	chr14	71374348	71374349	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	226	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr12.121087298.-	chr12	121087298	121087299	-	0	NA	"intron (NM_001033677, intron 1 of 5)"	"intron (NM_001033677, intron 1 of 5)"	1012	NM_004276	9478	Hs.458482	NM_001033677	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
chr10.7626562.-	chr10	7626562	7626563	-	0	NA	"intron (NM_001001851, intron 8 of 11)"	AluSx1|SINE|Alu	-35074	NM_032817	80760	Hs.732936	NM_001001851	ENSG00000123243	ITIH5	ITI-HC5	"inter-alpha-trypsin inhibitor heavy chain family, member 5"	protein-coding
chr13.21872296.+	chr13	21872296	21872297	+	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	32	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chr16.30798030.+	chr16	30798030	30798031	+	0	NA	"intron (NM_001080417, intron 1 of 2)"	CpG	493	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
chr2.38595138.+	chr2	38595138	38595139	+	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	9294	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr7.20445235.-	chr7	20445235	20445236	-	0	NA	"intron (NM_002214, intron 11 of 13)"	AluY|SINE|Alu	-74510	NM_002214	3696	Hs.592171	NM_002214		ITGB8	-	"integrin, beta 8"	protein-coding
chr1.227982954.+	chr1	227982954	227982955	+	0	NA	Intergenic	Intergenic	-20464	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr12.49856926.+	chr12	49856926	49856927	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	73969	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr12.101954475.+	chr12	101954475	101954476	+	0	NA	Intergenic	AluSx|SINE|Alu	-34234	NM_001254721	4604	Hs.654589	NM_001254718	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	"myosin binding protein C, slow type"	protein-coding
chr2.85999675.-	chr2	85999675	85999676	-	0	NA	"intron (NM_032827, intron 2 of 2)"	"intron (NM_032827, intron 2 of 2)"	-18766	NM_032827	84913	Hs.135569	NM_032827		ATOH8	HATH6|bHLHa21	atonal homolog 8 (Drosophila)	protein-coding
chr8.27509109.+	chr8	27509109	27509110	+	0	NA	"exon (NM_182826, exon 3 of 6)"	"exon (NM_182826, exon 3 of 6)"	17532	NM_016240	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	"scavenger receptor class A, member 3"	protein-coding
chr12.132623249.+	chr12	132623249	132623250	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5631	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr19.17836937.-	chr19	17836937	17836938	-	0	NA	"exon (NM_018174, exon 5 of 7)"	"exon (NM_018174, exon 5 of 7)"	-6634	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chr21.31311347.+	chr21	31311347	31311348	+	0	NA	"intron (NM_175611, intron 1 of 15)"	"intron (NM_175611, intron 1 of 15)"	935	NM_000830	2897	Hs.664641	NM_000830	ENSG00000171189	GRIK1	EAA3|EEA3|GLR5|GLUR5|GluK1	"glutamate receptor, ionotropic, kainate 1"	protein-coding
chr6.126111982.-	chr6	126111982	126111983	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-73	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr4.177147028.-	chr4	177147028	177147029	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30206	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr9.138065636.+	chr9	138065636	138065637	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7819	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr15.41539513.+	chr15	41539513	41539514	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16076	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr15.53082927.-	chr15	53082927	53082928	-	0	NA	promoter-TSS (NM_004498)	promoter-TSS (NM_004498)	718	NM_004498	3175	Hs.658573	NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
chr7.128141998.-	chr7	128141998	128141999	-	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	-25215	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr9.134244085.+	chr9	134244085	134244086	+	0	NA	Intergenic	AluSc|SINE|Alu	-61392	NM_013318	84726	Hs.743955	NM_032640	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline-rich coiled-coil 2B	protein-coding
chr15.91370865.+	chr15	91370865	91370866	+	0	NA	Intergenic	AluSz|SINE|Alu	-41020	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr19.7123267.+	chr19	7123267	7123268	+	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	53796	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chrX.153736262.+	chrX	153736262	153736263	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8304	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr1.33523392.-	chr1	33523392	33523393	-	0	NA	Intergenic	AluSx|SINE|Alu	20880	NR_037592	204	Hs.470907	NM_001199199	ENSG00000004455	AK2	ADK2|AK 2	adenylate kinase 2	protein-coding
chr13.112726555.-	chr13	112726555	112726556	-	0	NA	TTS (NM_005986)	TTS (NM_005986)	-4642	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr19.38335699.+	chr19	38335699	38335700	+	0	NA	"intron (NR_040015, intron 2 of 5)"	AluSg|SINE|Alu	10137	NR_040015	100631378	Hs.726940	NR_040015	ENSG00000225868	LOC100631378	-	uncharacterized 100631378	miscRNA
chr4.1721032.+	chr4	1721032	1721033	+	0	NA	"intron (NM_138385, intron 1 of 2)"	AluY|SINE|Alu	2052	NM_001127266	92305	Hs.518562	NM_001127266	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129	protein-coding
chr17.78559364.+	chr17	78559364	78559365	+	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	40739	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr6.42095985.-	chr6	42095985	42095986	-	0	NA	"intron (NM_001164446, intron 2 of 4)"	MER33|DNA|hAT-Charlie	-14730	NM_001164446	647024	Hs.444277	NM_001164446	ENSG00000188112	C6orf132	bA7K24.2	chromosome 6 open reading frame 132	protein-coding
chr13.100260307.+	chr13	100260307	100260308	+	0	NA	"intron (NM_206808, intron 1 of 8)"	"intron (NM_206808, intron 1 of 8)"	1388	NM_206808	171425	Hs.655642	NM_138280	ENSG00000125246	CLYBL	CLB|bA134O15.1	citrate lyase beta like	protein-coding
chr11.47459650.+	chr11	47459650	47459651	+	0	NA	"intron (NM_032645, intron 5 of 5)"	"intron (NM_032645, intron 5 of 5)"	11080	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
chr20.62108022.-	chr20	62108022	62108023	-	0	NA	Intergenic	AluSq2|SINE|Alu	4029	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr16.112576.-	chr16	112576	112577	-	0	NA	"exon (NM_022450, exon 7 of 18)"	"exon (NM_022450, exon 7 of 18)"	-8747	NM_024571	79622	Hs.15277	NM_024571		SNRNP25	C16orf33	small nuclear ribonucleoprotein 25kDa (U11/U12)	protein-coding
chr12.53535528.+	chr12	53535528	53535529	+	0	NA	Intergenic	AluY|SINE|Alu	22749	NM_001244706	51380	Hs.279815	NM_001244705	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
chr3.164119671.-	chr3	164119671	164119672	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-676612	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr1.21893053.-	chr1	21893053	21893054	-	0	NA	"intron (NM_001127501, intron 5 of 10)"	AluSx|SINE|Alu	-57195	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr7.5582619.-	chr7	5582619	5582620	-	0	NA	Intergenic	Intergenic	12387	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr11.92637308.+	chr11	92637308	92637309	+	0	NA	Intergenic	AluY|SINE|Alu	-65481	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr6.139013644.-	chr6	139013644	139013645	-	0	NA	"intron (NR_033896, intron 1 of 3)"	CpG	-839	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr5.675435.-	chr5	675435	675436	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18075	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr9.38829846.+	chr9	38829846	38829847	+	0	NA	Intergenic	AluY|SINE|Alu	208761	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr3.129048063.-	chr3	129048063	129048064	-	0	NA	Intergenic	AluY|SINE|Alu	12943	NM_006026	8971	Hs.75307	NM_006026	ENSG00000184897	H1FX	H1X	"H1 histone family, member X"	protein-coding
chr8.144124757.-	chr8	144124757	144124758	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4078	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr6.118344082.+	chr6	118344082	118344083	+	0	NA	"intron (NM_001029858, intron 1 of 7)"	AluY|SINE|Alu	115393	NM_001029858	222553	Hs.654841	NM_001029858	ENSG00000196376	SLC35F1	C6orf169|dJ230I3.1	"solute carrier family 35, member F1"	protein-coding
chr7.158068853.+	chr7	158068853	158068854	+	0	NA	"intron (NM_130842, intron 2 of 21)"	"intron (NM_130842, intron 2 of 21)"	256652	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr7.1474633.+	chr7	1474633	1474634	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24476	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr9.35183314.-	chr9	35183314	35183315	-	0	NA	"intron (NM_006377, intron 1 of 38)"	SVA_A|Other|Other	-21325	NM_006377	10497	Hs.493791	NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding
chr16.3203778.-	chr16	3203778	3203779	-	0	NA	Intergenic	AluSg|SINE|Alu	-18644	NM_001134655	7760	Hs.115284	NM_001134655	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
chr16.15051669.+	chr16	15051669	15051670	+	0	NA	Intergenic	Intergenic	-17164	NM_015027	23042	Hs.370781	NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal-dependent decarboxylase domain containing 1	protein-coding
chr22.50655049.-	chr22	50655049	50655050	-	0	NA	"intron (NM_031454, intron 6 of 8)"	"intron (NM_031454, intron 6 of 8)"	-15641	NM_031454	83642	Hs.365405	NM_031454	ENSG00000073169	SELO	-	selenoprotein O	protein-coding
chrM.1287.-	chrM	1287	1288	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr4.140708117.+	chr4	140708117	140708118	+	0	NA	"intron (NM_018717, intron 3 of 5)"	"intron (NM_018717, intron 3 of 5)"	121195	NM_002413	4258	Hs.81874	NM_001204366	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
chr16.17617325.+	chr16	17617325	17617326	+	0	NA	Intergenic	AluSz|SINE|Alu	-52587	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr22.46522744.-	chr22	46522744	46522745	-	0	NA	Intergenic	Intergenic	-13178	NR_029479	406884		NR_029479	ENSG00000207875	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	miscRNA
chr6.168352173.+	chr6	168352173	168352174	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25446	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr17.79898091.-	chr17	79898091	79898092	-	0	NA	"3' UTR (NM_001145113, exon 3 of 3)"	"3' UTR (NM_001145113, exon 3 of 3)"	3123	NM_153824	5831	Hs.163451	NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
chr22.20104731.+	chr22	20104731	20104732	+	0	NA	promoter-TSS (NM_022727)	promoter-TSS (NM_022727)	87	NM_022727	27037	Hs.713579	NM_001257994	ENSG00000099899	TRMT2A	HTF9C	tRNA methyltransferase 2 homolog A (S. cerevisiae)	protein-coding
chr6.33500225.-	chr6	33500225	33500226	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47845	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr6.150413237.-	chr6	150413237	150413238	-	0	NA	Intergenic	AluY|SINE|Alu	23035	NM_024518	79465	Hs.326556	NM_024518	ENSG00000131019	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
chr11.119450612.+	chr11	119450612	119450613	+	0	NA	Intergenic	AluSx3|SINE|Alu	148823	NM_203286	5818	Hs.334846	NM_002855	ENSG00000110400	PVRL1	CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
chr1.40052608.+	chr1	40052608	40052609	+	0	NA	Intergenic	AluSq|SINE|Alu	-10087	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr4.166248525.-	chr4	166248525	166248526	-	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	293	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr8.55038070.-	chr8	55038070	55038071	-	0	NA	Intergenic	SVA_F|Other|Other	9711	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
chr19.38836228.-	chr19	38836228	38836229	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9785	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr13.46489322.+	chr13	46489322	46489323	+	0	NA	Intergenic	MER52D|LTR|ERV1	-63476	NM_198849	283514	Hs.368483	NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
chr19.33794743.+	chr19	33794743	33794744	+	0	NA	"non-coding (NR_026887, exon 1 of 1)"	"non-coding (NR_026887, exon 1 of 1)"	980	NR_026887	80054	Hs.287521	NM_024988		CEBPA-AS1	-	CEBPA antisense RNA 1 (head to head)	miscRNA
chr2.10091011.-	chr2	10091011	10091012	-	0	NA	promoter-TSS (NM_198182)	promoter-TSS (NM_198182)	781	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr12.113494340.+	chr12	113494340	113494341	+	0	NA	Intergenic	Intergenic	-1322	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex homolog 1 (Drosophila)	protein-coding
chr2.106682180.-	chr2	106682180	106682181	-	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-67	NM_032411	84417	Hs.43125	NM_032411	ENSG00000119147	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
chr10.45240292.-	chr10	45240292	45240293	-	0	NA	Intergenic	AluSx1|SINE|Alu	166472	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr8.104645103.+	chr8	104645103	104645104	+	0	NA	"intron (NM_001100117, intron 1 of 23)"	AluY|SINE|Alu	132127	NM_001100117	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr7.727494.-	chr7	727494	727495	-	0	NA	"intron (NM_002735, intron 2 of 10)"	AluSx1|SINE|Alu	-24667	NM_002735	5575	Hs.520851	NM_001164758	ENSG00000188191	PRKAR1B	PRKAR1	"protein kinase, cAMP-dependent, regulatory, type I, beta"	protein-coding
chr9.127626594.-	chr9	127626594	127626595	-	0	NA	Intergenic	AluSx|SINE|Alu	2354	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr13.98628578.+	chr13	98628578	98628579	+	0	NA	"intron (NM_002271, intron 3 of 28)"	CpG	22649	NM_002271	3843	Hs.712598	NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
chr11.46617779.+	chr11	46617779	46617780	+	0	NA	Intergenic	AluYc|SINE|Alu	-2160	NM_001267782	55626	Hs.654644	NM_001267782	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy/beclin-1 regulator 1	protein-coding
chr1.1102517.+	chr1	1102517	1102518	+	0	NA	promoter-TSS (NR_029639)	promoter-TSS (NR_029639)	33	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B	microRNA 200b	miscRNA
chr14.34924286.+	chr14	34924286	34924287	+	0	NA	"intron (NM_138288, intron 1 of 1)"	AluSx1|SINE|Alu	7182	NM_138288	171546	Hs.740577	NM_138288	ENSG00000165389	SPTSSA	C14orf147|SSSPTA	"serine palmitoyltransferase, small subunit A"	protein-coding
chr9.83512.-	chr9	83512	83513	-	0	NA	Intergenic	SVA_E|Other|Other	-34905	NM_207305	2298	Hs.584759	NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
chrX.112187599.-	chrX	112187599	112187600	-	0	NA	Intergenic	AluY|SINE|Alu	103556	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr14.101189472.+	chr14	101189472	101189473	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3730	NM_003836	8788	Hs.533717	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta-like 1 homolog (Drosophila)	protein-coding
chr7.12736912.+	chr7	12736912	12736913	+	0	NA	Intergenic	AluSg|SINE|Alu	10001	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr7.53587131.-	chr7	53587131	53587132	-	0	NA	Intergenic	AluY|SINE|Alu	-292493	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr12.124456852.-	chr12	124456852	124456853	-	0	NA	promoter-TSS (NM_152437)	promoter-TSS (NM_152437)	-311	NM_025140	80212	Hs.713131	NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
chr2.237068288.-	chr2	237068288	237068289	-	0	NA	Intergenic	CpG	-8364	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr20.61371652.-	chr20	61371652	61371653	-	0	NA	"intron (NM_002531, intron 1 of 3)"	"intron (NM_002531, intron 1 of 3)"	-31463	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
chr1.43856909.+	chr1	43856909	43856910	+	0	NA	"intron (NM_015284, intron 1 of 70)"	AluSp|SINE|Alu	1353	NM_015284	23334	Hs.643560	NM_015284	ENSG00000198198	SZT2	C1orf84|KIAA0467|RP11-506B15.3|SZT2A|SZT2B	seizure threshold 2 homolog (mouse)	protein-coding
chr4.55034893.+	chr4	55034893	55034894	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60371	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr4.26862247.-	chr4	26862247	26862248	-	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	66	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr19.9311234.+	chr19	9311234	9311235	+	0	NA	Intergenic	AluSc8|SINE|Alu	14313	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr15.82394004.+	chr15	82394004	82394005	+	0	NA	Intergenic	AluY|SINE|Alu	-55520	NM_032246	84206	Hs.744275	NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 homolog B (C. elegans)	protein-coding
chr14.80915450.+	chr14	80915450	80915451	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-218053	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr19.18180403.-	chr19	18180403	18180404	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17294	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr5.65936254.+	chr5	65936254	65936255	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44078	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr8.3500976.+	chr8	3500976	3500977	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351352	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr7.2943525.-	chr7	2943525	2943526	-	0	NA	Intergenic	Intergenic	59566	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr7.532209.+	chr7	532209	532210	+	0	NA	Intergenic	Intergenic	27272	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr13.88664964.-	chr13	88664964	88664965	-	0	NA	Intergenic	AluSx1|SINE|Alu	-340094	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	"SLIT and NTRK-like family, member 5"	protein-coding
chr10.14719517.-	chr10	14719517	14719518	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97379	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr3.9398187.-	chr3	9398187	9398188	-	0	NA	Intergenic	AluY|SINE|Alu	6530	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chr5.86548512.+	chr5	86548512	86548513	+	0	NA	Intergenic	AluSc8|SINE|Alu	-15558	NM_002890	5921	Hs.664080	NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP	RAS p21 protein activator (GTPase activating protein) 1	protein-coding
chr6.12041577.-	chr6	12041577	12041578	-	0	NA	"intron (NM_002114, intron 2 of 8)"	AluY|SINE|Alu	-28853	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr5.175560116.+	chr5	175560116	175560117	+	0	NA	Intergenic	Intergenic	13564	NR_038402	100507387	Hs.368516	NR_038402	ENSG00000182230	LOC100507387	-	uncharacterized LOC100507387	miscRNA
chr8.107670080.-	chr8	107670080	107670081	-	0	NA	promoter-TSS (NM_181354)	promoter-TSS (NM_181354)	-44	NM_181354	55074	Hs.701892	NM_001198532	ENSG00000164830	OXR1	TLDC3	oxidation resistance 1	protein-coding
chr4.1400178.-	chr4	1400178	1400179	-	0	NA	Intergenic	CpG	-14838	NM_175918	285464	Hs.26410	NM_175918	ENSG00000179979	CRIPAK	-	cysteine-rich PAK1 inhibitor	protein-coding
chr19.21789909.+	chr19	21789909	21789910	+	0	NA	Intergenic	SVA_D|Other|Other	101472	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr21.9827482.+	chr21	9827482	9827483	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	1279	NR_037458	100500815		NR_037458	ENSG00000264063	MIR3687	-	microRNA 3687	miscRNA
chr15.22938735.+	chr15	22938735	22938736	+	0	NA	"intron (NM_014608, intron 9 of 30)"	AluY|SINE|Alu	-17020	NM_001033028	23191	Hs.26704	NM_001033028	ENSG00000068793	CYFIP1	P140SRA-1|SHYC|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
chr9.140662189.+	chr9	140662189	140662190	+	0	NA	"intron (NM_001145527, intron 10 of 15)"	AluSx1|SINE|Alu	4715	NR_024341	643210	Hs.721002	NM_001039765		FLJ40292	-	uncharacterized LOC643210	miscRNA
chr11.113666008.+	chr11	113666008	113666009	+	0	NA	Intergenic	AluSx|SINE|Alu	15490	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr5.28928046.-	chr5	28928046	28928047	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1069	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr5.675421.-	chr5	675421	675422	-	0	NA	"intron (NM_007030, intron 2 of 3)"	"intron (NM_007030, intron 2 of 3)"	-18089	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr21.43198244.+	chr21	43198244	43198245	+	0	NA	Intergenic	Intergenic	-10995	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
chr7.9314729.+	chr7	9314729	9314730	+	0	NA	Intergenic	AluY|SINE|Alu	-359171	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period homolog 3 (Drosophila) pseudogene	pseudo
chr1.40052603.+	chr1	40052603	40052604	+	0	NA	Intergenic	AluSq|SINE|Alu	-10082	NM_003819	8761	Hs.169900	NM_001135653	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	"poly(A) binding protein, cytoplasmic 4 (inducible form)"	protein-coding
chr2.100937672.-	chr2	100937672	100937673	-	0	NA	"intron (NM_198461, intron 1 of 11)"	"intron (NM_198461, intron 1 of 11)"	-1523	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
chr17.40536634.-	chr17	40536634	40536635	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3771	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr20.57372802.-	chr20	57372802	57372803	-	0	NA	Intergenic	HAL1|LINE|L1	-19947	NR_029844	407022		NR_029844	ENSG00000207950	MIR296	MIRN296|miRNA296	microRNA 296	miscRNA
chr3.8721297.-	chr3	8721297	8721298	-	0	NA	Intergenic	Intergenic	27533	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr2.198028892.-	chr2	198028892	198028893	-	0	NA	"intron (NM_153697, intron 2 of 9)"	"intron (NM_153697, intron 2 of 9)"	-146629	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr7.5558099.+	chr7	5558099	5558100	+	0	NA	Intergenic	AluYc|SINE|Alu	-4700	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr19.15037577.-	chr19	15037577	15037578	-	0	NA	Intergenic	AluSp|SINE|Alu	14724	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr10.73847834.-	chr10	73847834	73847835	-	0	NA	"intron (NM_001134434, intron 2 of 2)"	CpG	-697	NM_001244950	9806	Hs.523009	NM_001134434	ENSG00000107742	SPOCK2	testican-2	"sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2"	protein-coding
chr8.39197386.+	chr8	39197386	39197387	+	0	NA	"intron (NR_001448, intron 7 of 14)"	SVA_B|Other|Other	25204	NR_001448	255926	Hs.369765	NR_001448	ENSG00000196115	ADAM5	ADAM5P|TMDCII	"ADAM metallopeptidase domain 5, pseudogene"	pseudo
chr16.30960469.+	chr16	30960469	30960470	+	0	NA	promoter-TSS (NM_152288)	promoter-TSS (NM_152288)	64	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr19.44489504.+	chr19	44489504	44489505	+	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	1182	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr7.77315618.-	chr7	77315618	77315619	-	0	NA	"intron (NR_038361, intron 1 of 2)"	AluY|SINE|Alu	10125	NM_198467	222194	Hs.592289	NM_198467	ENSG00000187257	RSBN1L	-	round spermatid basic protein 1-like	protein-coding
chrX.54804788.+	chrX	54804788	54804789	+	0	NA	"intron (NM_198510, intron 5 of 12)"	AluSz|SINE|Alu	19885	NM_198510	347365	Hs.454272	NM_198510	ENSG00000102313	ITIH6	ITIH5L|UNQ6369|dJ14O9.1	"inter-alpha-trypsin inhibitor heavy chain family, member 6"	protein-coding
chr19.10090321.-	chr19	10090321	10090322	-	0	NA	"intron (NM_015719, intron 37 of 66)"	AluSz|SINE|Alu	-30826	NM_015719	50509	Hs.235368	NM_015719	ENSG00000080573	COL5A3	-	"collagen, type V, alpha 3"	protein-coding
chr11.73486305.+	chr11	73486305	73486306	+	0	NA	Intergenic	SVA_C|Other|Other	-12612	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr9.861764.-	chr9	861764	861765	-	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	-20074	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr10.95605022.-	chr10	95605022	95605023	-	0	NA	Intergenic	LTR12C|LTR|ERV1	48708	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr5.178885011.+	chr5	178885011	178885012	+	0	NA	Intergenic	AluY|SINE|Alu	-92551	NM_025158	80230	Hs.306769	NM_001040451	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chr16.4835206.-	chr16	4835206	4835207	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3192	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr16.656891.+	chr16	656891	656892	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16718	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr21.46895171.+	chr21	46895171	46895172	+	0	NA	"intron (NM_030582, intron 3 of 41)"	CpG	19747	NM_030582	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chr13.21872295.-	chr13	21872295	21872296	-	0	NA	promoter-TSS (NR_046461)	promoter-TSS (NR_046461)	-31	NR_046461	650794	Hs.147563	NR_038939		MIPEPP3	LINC00539	mitochondrial intermediate peptidase pseudogene 3	pseudo
chrX.9477153.-	chrX	9477153	9477154	-	0	NA	"intron (NM_005647, intron 2 of 17)"	AluY|SINE|Alu	-43952	NM_005647	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr19.18253577.-	chr19	18253577	18253578	-	0	NA	"intron (NM_015016, intron 20 of 26)"	AluJb|SINE|Alu	10411	NR_073517	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr12.57177801.+	chr12	57177801	57177802	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20693	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr5.115953561.-	chr5	115953561	115953562	-	0	NA	Intergenic	AluY|SINE|Alu	43010	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr17.18575677.+	chr17	18575677	18575678	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	817	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr3.22843313.+	chr3	22843313	22843314	+	0	NA	Intergenic	L1PA2|LINE|L1	-401471	NM_152653	7325	Hs.595802	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
chr4.177332646.-	chr4	177332646	177332647	-	0	NA	Intergenic	AluY|SINE|Alu	-91556	NM_021928	60559	Hs.42194	NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22/23|SPC3|YLR066W	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
chr2.211170536.+	chr2	211170536	211170537	+	0	NA	"intron (NM_079420, intron 1 of 6)"	AluSp|SINE|Alu	-2197	NM_079422	4632	Hs.187338	NM_079420	ENSG00000168530	MYL1	MLC1F|MLC3F	"myosin, light chain 1, alkali; skeletal, fast"	protein-coding
chr17.79084414.+	chr17	79084414	79084415	+	0	NA	TTS (NM_017450)	TTS (NM_017450)	14759	NR_030394	724027		NR_030394		MIR657	MIRN657|hsa-mir-657	microRNA 657	miscRNA
chr2.235844051.+	chr2	235844051	235844052	+	0	NA	Intergenic	AluSc|SINE|Alu	-16577	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
chr17.74894601.+	chr17	74894601	74894602	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25872	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr4.8913695.+	chr4	8913695	8913696	+	0	NA	Intergenic	Intergenic	-37782	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr6.151771575.-	chr6	151771575	151771576	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1741	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr9.137200936.-	chr9	137200936	137200937	-	0	NA	Intergenic	Intergenic	17380	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	"retinoid X receptor, alpha"	protein-coding
chr5.114712364.-	chr5	114712364	114712365	-	0	NA	Intergenic	MIRb|SINE|MIR	79906	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr2.210525762.-	chr2	210525762	210525763	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-81359	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr16.11746977.-	chr16	11746977	11746978	-	0	NA	Intergenic	AluSx1|SINE|Alu	15312	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr9.34070288.-	chr9	34070288	34070289	-	0	NA	Intergenic	AluSz|SINE|Alu	21341	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr2.240401995.+	chr2	240401995	240401996	+	0	NA	Intergenic	Intergenic	-79352	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr13.96681123.-	chr13	96681123	96681124	-	0	NA	"intron (NM_020121, intron 2 of 38)"	AluY|SINE|Alu	-24613	NM_020121	55757	Hs.656444	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
chr2.141441418.-	chr2	141441418	141441419	-	0	NA	"intron (NM_018557, intron 41 of 90)"	"intron (NM_018557, intron 41 of 90)"	-1447852	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
chr5.159429739.-	chr5	159429739	159429740	-	0	NA	Intergenic	AluSz|SINE|Alu	6441	NM_003314	7265	Hs.519718	NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
chr10.101190279.-	chr10	101190279	101190280	-	0	NA	"exon (NM_002079, exon 1 of 9)"	"exon (NM_002079, exon 1 of 9)"	-251	NM_002079	2805	Hs.500756	NM_002079	ENSG00000120053	GOT1	ASTQTL1|GIG18	"glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)"	protein-coding
chr10.12405369.+	chr10	12405369	12405370	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13786	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chr15.29130790.-	chr15	29130790	29130791	-	0	NA	Intergenic	CpG	36969	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr12.104506923.+	chr12	104506923	104506924	+	0	NA	Intergenic	AluY|SINE|Alu	25117	NM_006166	4801	Hs.84928	NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	"nuclear transcription factor Y, beta"	protein-coding
chr17.59482743.-	chr17	59482743	59482744	-	0	NA	"exon (NM_005994, exon 6 of 7)"	"exon (NM_005994, exon 6 of 7)"	-5486	NM_005994	6909	Hs.531085	NM_005994	ENSG00000121068	TBX2	-	T-box 2	protein-coding
chr10.95605026.+	chr10	95605026	95605027	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-48704	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr2.109308539.+	chr2	109308539	109308540	+	0	NA	Intergenic	AluY|SINE|Alu	-27398	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr5.18111557.-	chr5	18111557	18111558	-	0	NA	Intergenic	AluY|SINE|Alu	724138	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr11.66401543.-	chr11	66401543	66401544	-	0	NA	"intron (NM_001198846, intron 1 of 1)"	AluSp|SINE|Alu	4545	NM_001198843	5936	Hs.728823	NM_001198843	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
chr8.98771866.+	chr8	98771866	98771867	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15943	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr17.29030322.+	chr17	29030322	29030323	+	0	NA	Intergenic	AluSx|SINE|Alu	-6304	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
chr10.48428828.-	chr10	48428828	48428829	-	0	NA	"exon (NM_004962, exon 2 of 3)"	"exon (NM_004962, exon 2 of 3)"	-10310	NM_004962	2662	Hs.2171	NM_004962	ENSG00000107623	GDF10	BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
chr9.100559138.+	chr9	100559138	100559139	+	0	NA	Intergenic	SVA_D|Other|Other	-56399	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2	forkhead box E1 (thyroid transcription factor 2)	protein-coding
chr11.72160502.-	chr11	72160502	72160503	-	0	NA	Intergenic	AluY|SINE|Alu	14778	NM_001258392	81570	Hs.523877	NM_001258392	ENSG00000162129	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
chr10.104238460.+	chr10	104238460	104238461	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17290	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr10.59080726.-	chr10	59080726	59080727	-	0	NA	Intergenic	AluY|SINE|Alu	16407	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr9.139085517.-	chr9	139085517	139085518	-	0	NA	Intergenic	CpG	-9487	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
chr19.18416233.+	chr19	18416233	18416234	+	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	17768	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr12.6391356.-	chr12	6391356	6391357	-	0	NA	Intergenic	L2b|LINE|L2	28246	NM_018173	55200	Hs.631660	NM_001144856	ENSG00000008323	PLEKHG6	MyoGEF	"pleckstrin homology domain containing, family G (with RhoGef domain) member 6"	protein-coding
chr1.17034300.+	chr1	17034300	17034301	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12352	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr22.18839319.+	chr22	18839319	18839320	+	0	NA	Intergenic	Intergenic	-54417	NM_005675	8214	Hs.474185	NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
chr2.43254192.+	chr2	43254192	43254193	+	0	NA	Intergenic	Intergenic	199553	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr4.114652855.+	chr4	114652855	114652856	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30228	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chr9.114342827.-	chr9	114342827	114342828	-	0	NA	"intron (NM_001146108, intron 6 of 9)"	AluSp|SINE|Alu	-18884	NM_012212	22949	Hs.584864	NM_001146108	ENSG00000106853	PTGR1	LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
chr3.125174761.-	chr3	125174761	125174762	-	0	NA	"intron (NR_073435, intron 10 of 12)"	AluY|SINE|Alu	-64297	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr3.124468932.-	chr3	124468932	124468933	-	0	NA	TTS (NM_000373)	TTS (NM_000373)	-19719	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
chr19.18057767.+	chr19	18057767	18057768	+	0	NA	Intergenic	AluSx|SINE|Alu	-4344	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr12.127944445.-	chr12	127944445	127944446	-	0	NA	Intergenic	Intergenic	421717	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	miscRNA
chr5.171395320.+	chr5	171395320	171395321	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38557	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr1.6330529.+	chr1	6330529	6330530	+	0	NA	"intron (NM_181864, intron 8 of 8)"	"intron (NM_181864, intron 8 of 8)"	-9494	NM_207370	387509	Hs.531581	NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
chr2.48811043.+	chr2	48811043	48811044	+	0	NA	"intron (NM_172311, intron 2 of 10)"	AluSg|SINE|Alu	3317	NM_001198594	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr5.36143012.-	chr5	36143012	36143013	-	0	NA	"intron (NM_001007527, intron 2 of 17)"	AluY|SINE|Alu	-5078	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	miscRNA
chr20.33062714.-	chr20	33062714	33062715	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8584	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr19.18180440.+	chr19	18180440	18180441	+	0	NA	TTS (NM_153701)	TTS (NM_153701)	17257	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr1.54839992.-	chr1	54839992	54839993	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-31987	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr6.126111963.-	chr6	126111963	126111964	-	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	-54	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chrX.99100688.-	chrX	99100688	99100689	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94153	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr18.20716033.-	chr18	20716033	20716034	-	0	NA	"exon (NM_001100619, exon 1 of 10)"	"exon (NM_001100619, exon 1 of 10)"	-306	NM_001100619	91768	Hs.11108	NM_001100619	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
chr2.166334156.-	chr2	166334156	166334157	-	0	NA	"intron (NM_001172173, intron 1 of 6)"	AluSx|SINE|Alu	-7999	NM_001172173	80034	Hs.470479	NM_001172173	ENSG00000178662	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine-serine-rich nuclear protein 3	protein-coding
chr7.12751305.+	chr7	12751305	12751306	+	0	NA	Intergenic	AluY|SINE|Alu	24394	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr18.70912343.-	chr18	70912343	70912344	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19390	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr20.62111439.+	chr20	62111439	62111440	+	0	NA	Intergenic	CpG	-7446	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr3.128194303.-	chr3	128194303	128194304	-	0	NA	Intergenic	Intergenic	8212	NM_153330	165721	Hs.518241	NM_153330	ENSG00000179407	DNAJB8	DJ6	"DnaJ (Hsp40) homolog, subfamily B, member 8"	protein-coding
chr16.11746952.-	chr16	11746952	11746953	-	0	NA	Intergenic	AluSx1|SINE|Alu	15337	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr18.46969319.-	chr18	46969319	46969320	-	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	-17760	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr17.73615662.-	chr17	73615662	73615663	-	0	NA	"intron (NR_003587, intron 43 of 60)"	"intron (NR_003587, intron 43 of 60)"	13852	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr2.175518187.-	chr2	175518187	175518188	-	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	18880	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr14.39544063.+	chr14	39544063	39544064	+	0	NA	"intron (NM_006364, intron 8 of 19)"	AluY|SINE|Alu	28374	NM_006364	10484	Hs.272927	NM_006364	ENSG00000100934	SEC23A	CLSD	Sec23 homolog A (S. cerevisiae)	protein-coding
chr12.56394860.+	chr12	56394860	56394861	+	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	3817	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr22.38498885.+	chr22	38498885	38498886	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7791	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chrX.144902922.+	chrX	144902922	144902923	+	0	NA	promoter-TSS (NM_001144009)	promoter-TSS (NM_001144009)	56	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr22.44893044.+	chr22	44893044	44893045	+	0	NA	"exon (NM_032287, exon 2 of 2)"	"exon (NM_032287, exon 2 of 2)"	961	NM_032287	84247	Hs.332795	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	"leucine zipper, down-regulated in cancer 1-like"	protein-coding
chr2.208031315.-	chr2	208031315	208031316	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-265	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chr1.151573443.-	chr1	151573443	151573444	-	0	NA	Intergenic	SVA_E|Other|Other	11219	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
chr22.43718276.+	chr22	43718276	43718277	+	0	NA	"intron (NM_173050, intron 2 of 21)"	AluSc8|SINE|Alu	21118	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr18.43751003.-	chr18	43751003	43751004	-	0	NA	Intergenic	AluYb8|SINE|Alu	2985	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chr7.532224.-	chr7	532224	532225	-	0	NA	Intergenic	Intergenic	-27257	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chrX.23801542.-	chrX	23801542	23801543	-	0	NA	"intron (NR_027783, intron 1 of 6)"	CpG	-267	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
chr11.101884980.-	chr11	101884980	101884981	-	0	NA	Intergenic	Intergenic	33189	NM_001195005	85016	Hs.98328	NM_001195005	ENSG00000137691	C11orf70	-	chromosome 11 open reading frame 70	protein-coding
chr8.141523820.-	chr8	141523820	141523821	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1739	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr1.54966386.+	chr1	54966386	54966387	+	0	NA	Intergenic	AluSq|SINE|Alu	-47421	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr10.43905418.+	chr10	43905418	43905419	+	0	NA	promoter-TSS (NM_004966)	promoter-TSS (NM_004966)	-722	NM_001098204	3185	Hs.712955	NM_001098204	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
chr19.36762848.-	chr19	36762848	36762849	-	0	NA	Intergenic	SST1|Satellite|centr	39397	NR_029389	100134317	Hs.729610	NR_029389		LOC100134317	-	uncharacterized LOC100134317	miscRNA
chr10.73567337.-	chr10	73567337	73567338	-	0	NA	"exon (NM_001171933, exon 12 of 23)"	"exon (NM_001171933, exon 12 of 23)"	4303	NM_001171935	64072	Hs.656032	NM_001171930	ENSG00000107736	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
chr20.39978494.-	chr20	39978494	39978495	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8934	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr14.103988591.+	chr14	103988591	103988592	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	605	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr11.119091824.+	chr11	119091824	119091825	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14838	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr9.138202318.-	chr9	138202318	138202319	-	0	NA	Intergenic	MER67B|LTR|ERV1	32777	NM_173520	157927	Hs.559511	NM_173520	ENSG00000178243	C9orf62	-	chromosome 9 open reading frame 62	protein-coding
chr13.21296095.-	chr13	21296095	21296096	-	0	NA	"3' UTR (NM_138284, exon 3 of 3)"	"3' UTR (NM_138284, exon 3 of 3)"	-18613	NM_138284	53342	Hs.655142	NM_138284	ENSG00000172458	IL17D	IL-17D|IL-22|IL-27|IL27	interleukin 17D	protein-coding
chr12.113725954.+	chr12	113725954	113725955	+	0	NA	"intron (NM_001143819, intron 20 of 28)"	"intron (NM_001143819, intron 20 of 28)"	46971	NM_024959	80024	Hs.286194	NM_024959	ENSG00000089060	SLC24A6	NCKX6|NCLX	"solute carrier family 24 (sodium/lithium/calcium exchanger), member 6"	protein-coding
chrX.20694433.-	chrX	20694433	20694434	-	0	NA	Intergenic	AluY|SINE|Alu	409683	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr17.38406622.-	chr17	38406622	38406623	-	0	NA	"intron (NM_133264, intron 1 of 7)"	AluY|SINE|Alu	-31048	NM_133264	147179	Hs.731598	NM_133264		WIPF2	WICH|WIRE	"WAS/WASL interacting protein family, member 2"	protein-coding
chr19.12606212.-	chr19	12606212	12606213	-	0	NA	Intergenic	CpG	10580	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr1.3342137.+	chr1	3342137	3342138	+	0	NA	"intron (NM_199454, intron 12 of 16)"	CpG	-29010	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
chr4.71832378.+	chr4	71832378	71832379	+	0	NA	"intron (NM_001244766, intron 3 of 6)"	AluSp|SINE|Alu	-26887	NM_000788	1633	Hs.709	NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
chr18.41408401.+	chr18	41408401	41408402	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550786	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr9.138959045.+	chr9	138959045	138959046	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28086	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr15.41674326.+	chr15	41674326	41674327	+	0	NA	Intergenic	SVA_F|Other|Other	20332	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr5.172717630.-	chr5	172717630	172717631	-	0	NA	Intergenic	Intergenic	-38876	NM_003714	8614	Hs.233160	NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
chr4.8379484.-	chr4	8379484	8379485	-	0	NA	"intron (NM_003501, intron 14 of 17)"	"intron (NM_003501, intron 14 of 17)"	-62968	NM_001101667	8310	Hs.479122	NM_001101667	ENSG00000087008	ACOX3	-	"acyl-CoA oxidase 3, pristanoyl"	protein-coding
chr16.78282844.-	chr16	78282844	78282845	-	0	NA	"intron (NM_016373, intron 5 of 8)"	AluSx3|SINE|Alu	-149517	NM_130791	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
chr7.150812755.+	chr7	150812755	150812756	+	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	28929	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr2.237068234.-	chr2	237068234	237068235	-	0	NA	Intergenic	CpG	-8418	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr19.589054.-	chr19	589054	589055	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	839	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr7.12595791.+	chr7	12595791	12595792	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14412	NM_001112706	85477	Hs.655515	NM_001112706	ENSG00000006747	SCIN	-	scinderin	protein-coding
chr8.29884852.-	chr8	29884852	29884853	-	0	NA	Intergenic	CpG	-55797	NM_016127	51669	Hs.521487	NM_016127	ENSG00000133872	TMEM66	FOAP-7|SARAF|XTP3	transmembrane protein 66	protein-coding
chr4.513547.+	chr4	513547	513548	+	0	NA	"intron (NM_001127178, intron 6 of 12)"	"intron (NM_001127178, intron 6 of 12)"	20558	NM_001127178	54872	Hs.7099	NM_001127178	ENSG00000174227	PIGG	GPI7|LAS21|PRO4405|RLGS1930	"phosphatidylinositol glycan anchor biosynthesis, class G"	protein-coding
chr5.2007707.+	chr5	2007707	2007708	+	0	NA	Intergenic	CpG	-124827	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr5.170687201.-	chr5	170687201	170687202	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49087	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr3.10206745.+	chr3	10206745	10206746	+	0	NA	"intron (NM_001570, intron 1 of 12)"	CpG	182	NM_001570	3656	Hs.449207	NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding
chr7.5374855.-	chr7	5374855	5374856	-	0	NA	"intron (NM_001080495, intron 18 of 29)"	AluSx1|SINE|Alu	-52294	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr14.21560438.-	chr14	21560438	21560439	-	0	NA	"exon (NM_001102454, exon 3 of 5)"	"exon (NM_001102454, exon 3 of 5)"	-6370	NM_016423	51222	Hs.250493	NM_001101672	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
chr11.62418833.+	chr11	62418833	62418834	+	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	1941	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr17.42431397.-	chr17	42431397	42431398	-	0	NA	TTS (NM_002087)	TTS (NM_002087)	-8906	NM_002087	2896	Hs.514220	NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin	protein-coding
chr20.48080621.-	chr20	48080621	48080622	-	0	NA	"intron (NM_004975, intron 1 of 1)"	AluY|SINE|Alu	-18560	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	"potassium voltage-gated channel, Shab-related subfamily, member 1"	protein-coding
chr4.17513835.+	chr4	17513835	17513836	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	22	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr12.118079853.-	chr12	118079853	118079854	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280246	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr16.1824203.-	chr16	1824203	1824204	-	0	NA	"intron (NM_001257370, intron 2 of 7)"	"intron (NM_001257370, intron 2 of 7)"	-974	NM_001257370	197342	Hs.7247	NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic endonuclease 1 homolog 2 (S. pombe)	protein-coding
chr5.177964191.+	chr5	177964191	177964192	+	0	NA	"intron (NM_173465, intron 2 of 28)"	"intron (NM_173465, intron 2 of 28)"	53365	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr16.89055931.+	chr16	89055931	89055932	+	0	NA	Intergenic	Intergenic	-12427	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr5.141233788.+	chr5	141233788	141233789	+	0	NA	"exon (NM_032420, exon 5 of 5)"	"exon (NM_032420, exon 5 of 5)"	24156	NM_002587	5097	Hs.79769	NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
chr21.43109546.+	chr21	43109546	43109547	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10084	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr2.131801466.+	chr2	131801466	131801467	+	0	NA	"intron (NM_032995, intron 11 of 12)"	"intron (NM_032995, intron 11 of 12)"	49538	NM_001009993	130074	Hs.534679	NM_001009993	ENSG00000152102	FAM168B	MANI	"family with sequence similarity 168, member B"	protein-coding
chr4.17513785.+	chr4	17513785	17513786	+	0	NA	promoter-TSS (NM_000320)	promoter-TSS (NM_000320)	72	NM_000320	5860	Hs.75438	NM_000320	ENSG00000151552	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
chr17.1466671.-	chr17	1466671	1466672	-	0	NA	promoter-TSS (NM_006224)	promoter-TSS (NM_006224)	561	NM_006224	5306	Hs.429819	NM_006224	ENSG00000174238	PITPNA	PI-TPalpha|PITPN|VIB1A	"phosphatidylinositol transfer protein, alpha"	protein-coding
chr12.12518401.+	chr12	12518401	12518402	+	0	NA	"intron (NM_058169, intron 2 of 3)"	AluJb|SINE|Alu	8381	NM_058169	118426	Hs.720779	NM_058169	ENSG00000165714	LOH12CR1	LOH1CR12	"loss of heterozygosity, 12, chromosomal region 1"	protein-coding
chr7.1221365.-	chr7	1221365	1221366	-	0	NA	Intergenic	Intergenic	21510	NM_182491	90637	Hs.648111	NM_182491	ENSG00000178381	ZFAND2A	AIRAP	"zinc finger, AN1-type domain 2A"	protein-coding
chr17.72706262.-	chr17	72706262	72706263	-	0	NA	"intron (NM_139018, intron 1 of 6)"	AluY|SINE|Alu	-2846	NM_139018	146722	Hs.567706	NM_139018	ENSG00000186074	CD300LF	CD300f|CLM-1|CLM1|IREM-1|IREM1|IgSF13|NKIR	CD300 molecule-like family member f	protein-coding
chr1.181058692.-	chr1	181058692	181058693	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1054	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr5.29531083.-	chr5	29531083	29531084	-	0	NA	Intergenic	AluSz6|SINE|Alu	-604106	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr22.20308066.-	chr22	20308066	20308067	-	0	NA	promoter-TSS (NM_033257)	promoter-TSS (NM_033257)	438	NM_033257	85359	Hs.410965	NM_033257	ENSG00000128185	DGCR6L	-	DiGeorge syndrome critical region gene 6-like	protein-coding
chr3.197354836.-	chr3	197354836	197354837	-	0	NA	promoter-TSS (NR_003266)	promoter-TSS (NR_003266)	84	NR_003266	220729	Hs.478854	NR_003266	ENSG00000214135	LOC220729	-	"succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene"	pseudo
chr6.167607669.-	chr6	167607669	167607670	-	0	NA	Intergenic	Intergenic	-23588	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr15.41443908.-	chr15	41443908	41443909	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35568	NM_017553	54617	Hs.292949	NM_017553	ENSG00000128908	INO80	INO80A|INOC1|hINO80	INO80 homolog (S. cerevisiae)	protein-coding
chr5.28928035.-	chr5	28928035	28928036	-	0	NA	TTS (NR_033961)	TTS (NR_033961)	-1058	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
chr20.29640158.-	chr20	29640158	29640159	-	0	NA	Intergenic	SVA_D|Other|Other	2020	NR_045115	140678	Hs.653099	NR_045115		MLLT10P1	MLLT10L|bA348I14.3	"myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1"	pseudo
chr1.55483773.-	chr1	55483773	55483774	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19156	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr3.32863305.+	chr3	32863305	32863306	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3795	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr22.50876255.+	chr22	50876255	50876256	+	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	37209	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr19.19006036.+	chr19	19006036	19006037	+	0	NA	"intron (NM_198207, intron 1 of 5)"	CpG	917	NM_001492	2657	Hs.412355	NM_001492	ENSG00000130283	GDF1	DORV|DTGA3	growth differentiation factor 1	protein-coding
chr8.71520523.-	chr8	71520523	71520524	-	0	NA	promoter-TSS (NR_038881)	promoter-TSS (NR_038881)	-171	NM_014294	23471	Hs.491988	NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
chr6.168352147.+	chr6	168352147	168352148	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25472	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr11.16894110.+	chr11	16894110	16894111	+	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	133962	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr16.3220614.-	chr16	3220614	3220615	-	0	NA	Intergenic	CpG	33633	NM_012360	4992	Hs.664502	NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	"olfactory receptor, family 1, subfamily F, member 1"	protein-coding
chr8.609225.-	chr8	609225	609226	-	0	NA	Intergenic	Intergenic	-72001	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr12.112407412.+	chr12	112407412	112407413	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43611	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr20.25755375.+	chr20	25755375	25755376	+	0	NA	"intron (NR_026714, intron 3 of 3)"	"intron (NR_026714, intron 3 of 3)"	21503	NR_027061	728882	Hs.682103	NR_026714		FAM182B	-	"family with sequence similarity 182, member B"	miscRNA
chr2.905549.-	chr2	905549	905550	-	0	NA	Intergenic	Intergenic	41005	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr15.41166202.-	chr15	41166202	41166203	-	0	NA	"exon (NM_133639, exon 1 of 3)"	"exon (NM_133639, exon 1 of 3)"	-285	NM_133639	171177	Hs.447901	NM_133639	ENSG00000104140	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
chr15.41539508.-	chr15	41539508	41539509	-	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	-16071	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr19.18340256.-	chr19	18340256	18340257	-	0	NA	"intron (NM_000923, intron 2 of 15)"	AluSx1|SINE|Alu	2971	NM_001098818	5143	Hs.132584	NM_000923	ENSG00000105650	PDE4C	DPDE1	"phosphodiesterase 4C, cAMP-specific"	protein-coding
chr10.134034487.+	chr10	134034487	134034488	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34073	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr20.5213531.-	chr20	5213531	5213532	-	0	NA	Intergenic	AluJr4|SINE|Alu	-81484	NM_144773	128674	Hs.375029	NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
chr7.12751307.-	chr7	12751307	12751308	-	0	NA	Intergenic	AluY|SINE|Alu	-24396	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr16.58257983.-	chr16	58257983	58257984	-	0	NA	Intergenic	AluSq2|SINE|Alu	25857	NM_001142302	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chrX.132538573.-	chrX	132538573	132538574	-	0	NA	"intron (NM_001448, intron 1 of 8)"	AluSg|SINE|Alu	-10632	NM_001448	2239	Hs.58367	NM_001448		GPC4	K-glypican	glypican 4	protein-coding
chr19.10041346.+	chr19	10041346	10041347	+	0	NA	"intron (NM_058164, intron 1 of 5)"	AluSx|SINE|Alu	5724	NM_058164	93145	Hs.169743	NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
chr11.119091810.+	chr11	119091810	119091811	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14824	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr9.107727049.-	chr9	107727049	107727050	-	0	NA	Intergenic	AluYa5|SINE|Alu	36522	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr6.149638369.-	chr6	149638369	149638370	-	0	NA	Intergenic	CpG	1067	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr15.90470269.+	chr15	90470269	90470270	+	0	NA	Intergenic	AluY|SINE|Alu	-14047	NM_182616	348110	Hs.6734	NM_182616		C15orf38	-	chromosome 15 open reading frame 38	protein-coding
chr7.64493639.+	chr7	64493639	64493640	+	0	NA	Intergenic	SVA_C|Other|Other	-5093	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr10.118467669.+	chr10	118467669	118467670	+	0	NA	"intron (NM_025015, intron 1 of 11)"	"intron (NM_025015, intron 1 of 11)"	34416	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr7.45053830.-	chr7	45053830	45053831	-	0	NA	"intron (NM_001167934, intron 1 of 8)"	AluSg4|SINE|Alu	13403	NM_001029835	83605	Hs.148272	NM_001029835	ENSG00000136280	CCM2	C7orf22|OSM	cerebral cavernous malformation 2	protein-coding
chr8.143546092.+	chr8	143546092	143546093	+	0	NA	"exon (NM_001702, exon 1 of 30)"	"exon (NM_001702, exon 1 of 30)"	715	NM_001702	575	Hs.194654	NM_001702	ENSG00000181790	BAI1	GDAIF	brain-specific angiogenesis inhibitor 1	protein-coding
chr5.178658008.+	chr5	178658008	178658009	+	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	114423	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr22.38498890.-	chr22	38498890	38498891	-	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	-7786	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr2.10163541.+	chr2	10163541	10163542	+	0	NA	Intergenic	Intergenic	-20141	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr2.101924977.+	chr2	101924977	101924978	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	201	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr2.47661271.-	chr2	47661271	47661272	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31065	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr14.103988608.-	chr14	103988608	103988609	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-588	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr12.120959447.-	chr12	120959447	120959448	-	0	NA	"intron (NM_032314, intron 2 of 6)"	AluSg7|SINE|Alu	-7517	NM_032314	84274	Hs.17250	NM_032314	ENSG00000110871	COQ5	-	"coenzyme Q5 homolog, methyltransferase (S. cerevisiae)"	protein-coding
chr11.92637328.+	chr11	92637328	92637329	+	0	NA	Intergenic	AluY|SINE|Alu	-65461	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr3.194930341.+	chr3	194930341	194930342	+	0	NA	"intron (NM_152531, intron 2 of 3)"	"intron (NM_152531, intron 2 of 3)"	61554	NM_152531	152002	Hs.743284	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
chr11.4258891.+	chr11	4258891	4258892	+	0	NA	Intergenic	SVA_B|Other|Other	50509	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	miscRNA
chr10.76620829.-	chr10	76620829	76620830	-	0	NA	"intron (NM_001256468, intron 3 of 17)"	AluSp|SINE|Alu	-34658	NM_012330	23522	Hs.740873	NM_001256468	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chr6.16831780.-	chr6	16831780	16831781	-	0	NA	Intergenic	AluY|SINE|Alu	70059	NM_000332	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
chr1.12465222.+	chr1	12465222	12465223	+	0	NA	"intron (NM_018156, intron 62 of 68)"	MER102b|DNA|hAT-Charlie	-102078	NR_003025	677885	Hs.721005	NR_003025		SNORA59A	ACA59	"small nucleolar RNA, H/ACA box 59A"	snoRNA
chr2.100253361.+	chr2	100253361	100253362	+	0	NA	"intron (NM_002285, intron 12 of 23)"	"intron (NM_002285, intron 12 of 23)"	-146881	NM_001037872	51455	Hs.443077	NM_001037872	ENSG00000135945	REV1	REV1L	"REV1, polymerase (DNA directed)"	protein-coding
chr5.180198328.-	chr5	180198328	180198329	-	0	NA	Intergenic	SVA_D|Other|Other	31270	NM_001001657	134083	Hs.554719	NM_001001657	ENSG00000174339	OR2Y1	OR5-2	"olfactory receptor, family 2, subfamily Y, member 1"	protein-coding
chr10.59351300.+	chr10	59351300	59351301	+	0	NA	Intergenic	AluY|SINE|Alu	-286981	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr22.32868808.+	chr22	32868808	32868809	+	0	NA	Intergenic	AluY|SINE|Alu	-1899	NM_012179	25793	Hs.5912	NM_001033024	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
chr3.172180201.+	chr3	172180201	172180202	+	0	NA	Intergenic	AluY|SINE|Alu	-13955	NM_004122	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	-	growth hormone secretagogue receptor	protein-coding
chr3.170096451.-	chr3	170096451	170096452	-	0	NA	"intron (NM_001145097, intron 1 of 5)"	AluSx1|SINE|Alu	-19040	NM_001248008	6498	Hs.581632	NM_001145097	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like oncogene	protein-coding
chr7.641250.+	chr7	641250	641251	+	0	NA	"intron (NM_002735, intron 6 of 10)"	GC_rich|Low_complexity|Low_complexity	81222	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	miscRNA
chr6.2084898.+	chr6	2084898	2084899	+	0	NA	"intron (NM_001253846, intron 4 of 10)"	AluY|SINE|Alu	91327	NM_001253846	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr10.28821793.-	chr10	28821793	28821794	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-371	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr5.89746523.+	chr5	89746523	89746524	+	0	NA	Intergenic	AluSz|SINE|Alu	24062	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr17.45897164.-	chr17	45897164	45897165	-	0	NA	"intron (NM_145798, intron 3 of 22)"	"intron (NM_145798, intron 3 of 22)"	-1983	NM_145798	114881	Hs.463320	NM_145798	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
chr13.30745041.-	chr13	30745041	30745042	-	0	NA	Intergenic	L2c|LINE|L2	-136150	NM_001014380	84056	Hs.243596	NM_001014380	ENSG00000102781	KATNAL1	-	katanin p60 subunit A-like 1	protein-coding
chr4.55034937.-	chr4	55034937	55034938	-	0	NA	Intergenic	AluSx3|SINE|Alu	60327	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr20.31162589.-	chr20	31162589	31162590	-	0	NA	"intron (NM_001256798, intron 1 of 10)"	"intron (NM_001256798, intron 1 of 10)"	-10286	NM_001256798	140688	Hs.729596	NM_001256798	ENSG00000197183	C20orf112	C20orf113|dJ1184F4.2|dJ1184F4.4	chromosome 20 open reading frame 112	protein-coding
chr19.53966570.-	chr19	53966570	53966571	-	0	NA	Intergenic	Intergenic	4419	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr7.519541.-	chr7	519541	519542	-	0	NA	Intergenic	Intergenic	-39940	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr3.29288092.+	chr3	29288092	29288093	+	0	NA	Intergenic	AluY|SINE|Alu	-34711	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr7.104040194.-	chr7	104040194	104040195	-	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	-71090	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr1.243422528.+	chr1	243422528	243422529	+	0	NA	"intron (NM_006642, intron 1 of 17)"	AluY|SINE|Alu	3221	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
chr19.34248508.-	chr19	34248508	34248509	-	0	NA	"intron (NM_022467, intron 2 of 3)"	(GAAA)n|Simple_repeat|Simple_repeat	39243	NM_001129994	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr11.92637225.-	chr11	92637225	92637226	-	0	NA	Intergenic	AluY|SINE|Alu	65564	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
chr1.145400452.+	chr1	145400452	145400453	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12739	NM_213653	148738	Hs.632436	NM_145277	ENSG00000168509	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
chr9.88491180.-	chr9	88491180	88491181	-	0	NA	Intergenic	AluYc|SINE|Alu	64877	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr11.100596545.+	chr11	100596545	100596546	+	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	38138	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr22.35097764.-	chr22	35097764	35097765	-	0	NA	Intergenic	AluSq2|SINE|Alu	364366	NM_001008494	91464	Hs.567637	NM_001008494	ENSG00000175329	ISX	Pix-1|RAXLX	intestine-specific homeobox	protein-coding
chr14.97183865.-	chr14	97183865	97183866	-	0	NA	Intergenic	AluY|SINE|Alu	79819	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr14.78273497.+	chr14	78273497	78273498	+	0	NA	"intron (NM_001142545, intron 1 of 9)"	AluYa5|SINE|Alu	7071	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr6.2945800.+	chr6	2945800	2945801	+	0	NA	Intergenic	AluSz6|SINE|Alu	16604	NM_001271825	5269	Hs.731506	NM_001195291	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	"serpin peptidase inhibitor, clade B (ovalbumin), member 6"	protein-coding
chr9.95526680.+	chr9	95526680	95526681	+	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	403	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr16.67519991.-	chr16	67519991	67519992	-	0	NA	Intergenic	AluY|SINE|Alu	2275	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chrX.43991587.-	chrX	43991587	43991588	-	0	NA	Intergenic	AluY|SINE|Alu	158666	NM_000266	4693	Hs.522615	NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
chr3.128362581.-	chr3	128362581	128362582	-	0	NA	"intron (NM_002950, intron 2 of 9)"	AluSq2|SINE|Alu	-7138	NM_002950	6184	Hs.603636	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
chr14.90540087.+	chr14	90540087	90540088	+	0	NA	"intron (NM_022054, intron 1 of 1)"	AluSx|SINE|Alu	11979	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr4.3270619.-	chr4	3270619	3270620	-	0	NA	Intergenic	Intergenic	-19852	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
chr3.107646767.-	chr3	107646767	107646768	-	0	NA	"non-coding (NR_015394, exon 3 of 3)"	"non-coding (NR_015394, exon 3 of 3)"	-44715	NR_015394	285205	Hs.737218	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	miscRNA
chr19.1131989.-	chr19	1131989	1131990	-	0	NA	"intron (NM_014963, intron 4 of 31)"	"intron (NM_014963, intron 4 of 31)"	-284	NM_001100122	22904	Hs.408708	NM_001100122	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
chr13.33774984.+	chr13	33774984	33774985	+	0	NA	"intron (NM_001243476, intron 5 of 17)"	AluY|SINE|Alu	5203	NM_052851	90627	Hs.721224	NM_001243466	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
chr12.133328162.-	chr12	133328162	133328163	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10289	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr14.106359675.-	chr14	106359675	106359676	-	0	NA	Intergenic	Intergenic	24163	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr9.14830739.-	chr9	14830739	14830740	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51208	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr16.29244980.-	chr16	29244980	29244981	-	0	NA	Intergenic	Intergenic	68628	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chrX.122910229.-	chrX	122910229	122910230	-	0	NA	Intergenic	AluJo|SINE|Alu	43325	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr10.135087600.-	chr10	135087600	135087601	-	0	NA	"intron (NM_001164489, intron 3 of 21)"	"intron (NM_001164489, intron 3 of 21)"	-2807	NM_001164490	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr3.42642407.+	chr3	42642407	42642408	+	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	165	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr9.139555555.+	chr9	139555555	139555556	+	0	NA	"intron (NR_046367, intron 1 of 9)"	"intron (NR_046367, intron 1 of 9)"	-1824	NM_016215	51162	Hs.91481	NM_016215	ENSG00000172889	EGFL7	NEU1|RP11-251M1.2|VE-STATIN|ZNEU1	"EGF-like-domain, multiple 7"	protein-coding
chr3.3841218.+	chr3	3841218	3841219	+	0	NA	promoter-TSS (NM_020873)	promoter-TSS (NM_020873)	97	NM_020873	57633	Hs.163244	NM_020873	ENSG00000175928	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
chr3.102885722.-	chr3	102885722	102885723	-	0	NA	Intergenic	MER50|LTR|ERV1	-731863	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr19.267162.-	chr19	267162	267163	-	0	NA	Intergenic	CpG	-24007	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr13.114899233.-	chr13	114899233	114899234	-	0	NA	Intergenic	Intergenic	1138	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr1.2574255.+	chr1	2574255	2574256	+	0	NA	"intron (NM_001242672, intron 6 of 6)"	CpG	-9774	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr12.53440736.-	chr12	53440736	53440737	-	0	NA	promoter-TSS (NM_198316)	promoter-TSS (NM_198316)	74	NM_198316	23371	Hs.343334	NM_015319	ENSG00000111077	TENC1	C1-TEN|C1TEN|TNS2	tensin like C1 domain containing phosphatase (tensin 2)	protein-coding
chr7.12751300.+	chr7	12751300	12751301	+	0	NA	Intergenic	AluY|SINE|Alu	24389	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr17.5148712.-	chr17	5148712	5148713	-	0	NA	Intergenic	AluSq|SINE|Alu	10557	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr19.17219020.-	chr19	17219020	17219021	-	0	NA	"intron (NM_004145, intron 2 of 39)"	"intron (NM_004145, intron 2 of 39)"	-32429	NM_004145	4650	Hs.736097	NM_001130065	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
chr8.22594699.+	chr8	22594699	22594700	+	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	-43884	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr6.66681594.-	chr6	66681594	66681595	-	0	NA	Intergenic	L1PA3|LINE|L1	-183822	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	"solute carrier family 25, member 51 pseudogene 1"	pseudo
chr2.43253928.+	chr2	43253928	43253929	+	0	NA	Intergenic	Intergenic	199817	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr11.63286731.-	chr11	63286731	63286732	-	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	-11272	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr16.29245027.+	chr16	29245027	29245028	+	0	NA	Intergenic	Intergenic	-68581	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
chr12.122458293.-	chr12	122458293	122458294	-	0	NA	Intergenic	AluSx1|SINE|Alu	1568	NM_020993	605	Hs.530970	NM_001024808		BCL7A	BCL7	B-cell CLL/lymphoma 7A	protein-coding
chr2.125181300.+	chr2	125181300	125181301	+	0	NA	"intron (NM_130773, intron 4 of 23)"	AluY|SINE|Alu	398436	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
chr1.101786729.-	chr1	101786729	101786730	-	0	NA	Intergenic	AluY|SINE|Alu	-19722	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-6	-	"RNA, U6 small nuclear 6"	snRNA
chr20.62111440.+	chr20	62111440	62111441	+	0	NA	Intergenic	CpG	-7447	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr16.57151548.-	chr16	57151548	57151549	-	0	NA	"intron (NM_152727, intron 5 of 15)"	"intron (NM_152727, intron 5 of 15)"	-25093	NM_152727	221184	Hs.736510	NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine II	protein-coding
chr7.1352032.+	chr7	1352032	1352033	+	0	NA	Intergenic	Intergenic	79378	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr14.103988587.-	chr14	103988587	103988588	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-609	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr2.11541689.-	chr2	11541689	11541690	-	0	NA	"intron (NR_047499, intron 2 of 2)"	AluY|SINE|Alu	-7582	NR_047499	100874055	Hs.102428	NR_047499	ENSG00000224177	LINC00570	ncRNA-a5	long intergenic non-protein coding RNA 570	miscRNA
chr20.11974562.+	chr20	11974562	11974563	+	0	NA	Intergenic	AluY|SINE|Alu	75997	NM_014962	22903	Hs.709366	NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
chr7.1001905.-	chr7	1001905	1001906	-	0	NA	Intergenic	Intergenic	7616	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr19.267125.+	chr19	267125	267126	+	0	NA	Intergenic	CpG	24044	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr14.23438208.-	chr14	23438208	23438209	-	0	NA	Intergenic	AluSx1|SINE|Alu	-8224	NM_198086	84962	Hs.655832	NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
chr17.79478577.+	chr17	79478577	79478578	+	0	NA	"exon (NM_001199954, exon 4 of 6)"	"exon (NM_001199954, exon 4 of 6)"	1315	NR_037688	71	Hs.706229	NM_001199954	ENSG00000184009	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26	"actin, gamma 1"	protein-coding
chr17.73615822.-	chr17	73615822	73615823	-	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	13692	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr19.18253453.-	chr19	18253453	18253454	-	0	NA	"intron (NM_015016, intron 20 of 26)"	AluY|SINE|Alu	10535	NR_073517	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|P85B|p85|p85-BETA	"phosphoinositide-3-kinase, regulatory subunit 2 (beta)"	protein-coding
chr12.118079896.+	chr12	118079896	118079897	+	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	-280289	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr7.77452545.-	chr7	77452545	77452546	-	0	NA	"intron (NM_001127360, intron 1 of 8)"	"intron (NM_001127360, intron 1 of 8)"	16902	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr22.50987291.-	chr22	50987291	50987292	-	0	NA	"exon (NM_138433, exon 1 of 1)"	"exon (NM_138433, exon 1 of 1)"	-829	NM_138433	113730	Hs.137007	NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
chr13.114803371.-	chr13	114803371	114803372	-	0	NA	"intron (NM_007368, intron 4 of 23)"	"intron (NM_007368, intron 4 of 23)"	-94724	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chrX.153694399.+	chrX	153694399	153694400	+	0	NA	"exon (NM_017514, exon 14 of 33)"	"exon (NM_017514, exon 14 of 33)"	7776	NM_017514	55558	Hs.632839	NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLEXIN-A3|PLXN3|PLXN4|SEX|XAP-6	plexin A3	protein-coding
chr19.13497353.+	chr19	13497353	13497354	+	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	119921	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr14.19502087.+	chr14	19502087	19502088	+	0	NA	Intergenic	Intergenic	-51278	NR_027480	404785	Hs.711826	NM_001005357	ENSG00000222036	POTEG	A26C2|ACTBL1|CT104.4|POTE-14|POTE14|POTE14alpha|POTE22	"POTE ankyrin domain family, member G"	protein-coding
chr6.114067433.-	chr6	114067433	114067434	-	0	NA	Intergenic	AluY|SINE|Alu	111094	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr2.170666413.-	chr2	170666413	170666414	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11091	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr17.21027151.+	chr17	21027151	21027152	+	0	NA	Intergenic	AluSc|SINE|Alu	-3090	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr6.159416857.+	chr6	159416857	159416858	+	0	NA	"intron (NM_031924, intron 1 of 7)"	AluY|SINE|Alu	4341	NM_031924	83861	Hs.154628	NM_031924	ENSG00000130363	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
chr17.18575682.+	chr17	18575682	18575683	+	0	NA	"non-coding (NR_026718, exon 1 of 1)"	"non-coding (NR_026718, exon 1 of 1)"	812	NR_026718	2310	Hs.592126	NR_026718		FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B pseudogene	pseudo
chr12.90103211.-	chr12	90103211	90103212	-	0	NA	"non-coding (NR_028138, exon 1 of 1)"	"non-coding (NR_028138, exon 1 of 1)"	-479	NR_028138	338758	Hs.601766	NR_028138		LOC338758	-	uncharacterized LOC338758	miscRNA
chr7.77452600.+	chr7	77452600	77452601	+	0	NA	"intron (NM_001127360, intron 1 of 8)"	AluSc|SINE|Alu	-16847	NM_001127359	57157	Hs.601884	NM_001127357	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
chr9.34329546.+	chr9	34329546	34329547	+	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	42	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr8.118789938.-	chr8	118789938	118789939	-	0	NA	Intergenic	SVA_B|Other|Other	-256973	NM_080651	90390	Hs.492612	NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
chr16.88463199.+	chr16	88463199	88463200	+	0	NA	Intergenic	Intergenic	-30680	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr19.48814055.+	chr19	48814055	48814056	+	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	9277	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr1.239598777.+	chr1	239598777	239598778	+	0	NA	Intergenic	AluSg|SINE|Alu	-193596	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	"cholinergic receptor, muscarinic 3"	protein-coding
chr11.89900039.-	chr11	89900039	89900040	-	0	NA	"intron (NM_005467, intron 11 of 18)"	AluSx|SINE|Alu	-32221	NM_005467	10003	Hs.503560	NM_005467	ENSG00000077616	NAALAD2	GCPIII|GPCIII|NAADALASE2|NAALADASE2	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding
chr8.14459395.+	chr8	14459395	14459396	+	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	251624	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr2.32738832.-	chr2	32738832	32738833	-	0	NA	"intron (NM_016252, intron 54 of 73)"	AluSg|SINE|Alu	18388	NR_030285	693143		NR_030285		MIR558	MIRN558|hsa-mir-558	microRNA 558	miscRNA
chr11.915967.-	chr11	915967	915968	-	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	909	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr10.13043571.-	chr10	13043571	13043572	-	0	NA	"5' UTR (NM_031455, exon 1 of 3)"	"5' UTR (NM_031455, exon 1 of 3)"	-133	NM_031455	83643	Hs.498720	NM_031455	ENSG00000151468	CCDC3	-	coiled-coil domain containing 3	protein-coding
chrX.53808351.+	chrX	53808351	53808352	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94654	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr17.79678851.-	chr17	79678851	79678852	-	0	NA	promoter-TSS (NM_012140)	promoter-TSS (NM_012140)	415	NM_012140	1468	Hs.548187	NM_001270888	ENSG00000183048	SLC25A10	DIC	"solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10"	protein-coding
chr6.105414638.+	chr6	105414638	105414639	+	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	9715	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr3.1900328.-	chr3	1900328	1900329	-	0	NA	Intergenic	AluSp|SINE|Alu	240222	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr17.8061033.+	chr17	8061033	8061034	+	0	NA	Intergenic	AluY|SINE|Alu	5260	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr12.57633852.+	chr12	57633852	57633853	+	0	NA	"intron (NM_020142, intron 1 of 4)"	CpG	623	NM_020142	56901	Hs.744062	NM_020142	ENSG00000185633	NDUFA4L2	NUOMS	"NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2"	protein-coding
chrX.47334410.+	chrX	47334410	47334411	+	0	NA	"intron (NM_153380, intron 1 of 4)"	AluYk12|SINE|Alu	7935	NM_007130	7592	Hs.737678	NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
chr1.197042166.-	chr1	197042166	197042167	-	0	NA	Intergenic	AluY|SINE|Alu	5769	NM_001994	2165	Hs.435782	NM_001994	ENSG00000143278	F13B	FXIIIB	"coagulation factor XIII, B polypeptide"	protein-coding
chrX.42144956.-	chrX	42144956	42144957	-	0	NA	Intergenic	SVA_D|Other|Other	362669	NM_001126054	8573	Hs.495984	NM_001126054	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
chr5.693682.+	chr5	693682	693683	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-172	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr9.719258.+	chr9	719258	719259	+	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	12452	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr10.103722897.+	chr10	103722897	103722898	+	0	NA	"intron (NM_024541, intron 20 of 25)"	AluSx|SINE|Alu	93035	NM_024541	79591	Hs.16004	NM_024541	ENSG00000120029	C10orf76	-	chromosome 10 open reading frame 76	protein-coding
chr19.1252688.-	chr19	1252688	1252689	-	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	-4136	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chrX.90204182.+	chrX	90204182	90204183	+	0	NA	Intergenic	AluY|SINE|Alu	-485415	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr1.54775803.+	chr1	54775803	54775804	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96176	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr6.25384259.+	chr6	25384259	25384260	+	0	NA	"intron (NM_017640, intron 2 of 36)"	AluSz|SINE|Alu	104603	NM_001173977	55604	Hs.670507	NM_001173977	ENSG00000079691	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
chr20.61764544.-	chr20	61764544	61764545	-	0	NA	Intergenic	Intergenic	30873	NR_003245	768097	Hs.635159	NR_003245		HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	miscRNA
chr1.197418606.-	chr1	197418606	197418607	-	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	-181272	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr14.97125918.-	chr14	97125918	97125919	-	0	NA	Intergenic	AluSz|SINE|Alu	137766	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr9.16748446.-	chr9	16748446	16748447	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluJb|SINE|Alu	-122340	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr16.29937656.-	chr16	29937656	29937657	-	0	NA	promoter-TSS (NM_178863)	promoter-TSS (NM_178863)	111	NM_178863	253980	Hs.534590	NM_178863	ENSG00000174943	KCTD13	PDIP1|POLDIP1|hBACURD1	potassium channel tetramerisation domain containing 13	protein-coding
chr7.494736.-	chr7	494736	494737	-	0	NA	Intergenic	(TCCG)n|Simple_repeat|Simple_repeat	-64745	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr16.4823708.-	chr16	4823708	4823709	-	0	NA	Intergenic	AluSq2|SINE|Alu	6542	NM_021646	26048	Hs.513316	NM_021646		ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
chr2.178128648.+	chr2	178128648	178128649	+	0	NA	promoter-TSS (NM_001145412)	promoter-TSS (NM_001145412)	-31	NM_001145412	4780	Hs.744006	NM_001145412	ENSG00000116044	NFE2L2	NRF2	nuclear factor (erythroid-derived 2)-like 2	protein-coding
chr17.1053787.+	chr17	1053787	1053788	+	0	NA	"intron (NM_001159746, intron 1 of 22)"	"intron (NM_001159746, intron 1 of 22)"	29379	NM_021962	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
chr13.114898628.+	chr13	114898628	114898629	+	0	NA	promoter-TSS (NM_007368)	promoter-TSS (NM_007368)	-533	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.48784490.-	chr2	48784490	48784491	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11669	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr19.15718062.-	chr19	15718062	15718063	-	0	NA	Intergenic	AluY|SINE|Alu	7967	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr1.3486259.+	chr1	3486259	3486260	+	0	NA	"intron (NM_001409, intron 4 of 36)"	"intron (NM_001409, intron 4 of 36)"	-8905	NR_030277	693135		NR_030277		MIR551A	MIRN551A	microRNA 551a	miscRNA
chr17.65989823.-	chr17	65989823	65989824	-	0	NA	promoter-TSS (NM_181656)	promoter-TSS (NM_181656)	58	NM_181656	284018	Hs.90790	NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
chrX.90204176.+	chrX	90204176	90204177	+	0	NA	Intergenic	AluY|SINE|Alu	-485421	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr12.133081798.-	chr12	133081798	133081799	-	0	NA	"intron (NM_001142641, intron 1 of 16)"	"intron (NM_001142641, intron 1 of 16)"	-14641	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr9.138065682.-	chr9	138065682	138065683	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7773	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr22.51066695.+	chr22	51066695	51066696	+	0	NA	promoter-TSS (NM_000487)	promoter-TSS (NM_000487)	-94	NM_001085427	410	Hs.731715	NM_000487		ARSA	MLD	arylsulfatase A	protein-coding
chr12.50228933.-	chr12	50228933	50228934	-	0	NA	TTS (NM_181708)	TTS (NM_181708)	-6607	NR_027500	100286844	Hs.656019	NR_027499	ENSG00000258057	BCDIN3D-AS1	-	BCDIN3D antisense RNA 1	miscRNA
chr6.34149267.-	chr6	34149267	34149268	-	0	NA	Intergenic	AluY|SINE|Alu	25868	NM_001256809	2914	Hs.736330	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	"glutamate receptor, metabotropic 4"	protein-coding
chr7.936447.-	chr7	936447	936448	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20256	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr10.28821810.-	chr10	28821810	28821811	-	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-388	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr5.131392216.+	chr5	131392216	131392217	+	0	NA	Intergenic	Intergenic	-4131	NM_000588	3562	Hs.694	NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	"interleukin 3 (colony-stimulating factor, multiple)"	protein-coding
chr2.91777920.+	chr2	91777920	91777921	+	0	NA	Intergenic	CpG	70055	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
chr12.123259460.+	chr12	123259460	123259461	+	0	NA	"intron (NM_201435, intron 1 of 12)"	AluY|SINE|Alu	404	NM_201435	84660	Hs.592008	NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
chr17.45078490.+	chr17	45078490	45078491	+	0	NA	Intergenic	Intergenic	-21876	NM_203400	388394	Hs.367999	NM_203400	ENSG00000179673	RPRML	-	reprimo-like	protein-coding
chr3.50314336.+	chr3	50314336	50314337	+	0	NA	"3' UTR (NM_004636, exon 18 of 18)"	"3' UTR (NM_004636, exon 18 of 18)"	-2182	NM_153215	132228	Hs.315177	NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine-rich single-pass membrane protein 2	protein-coding
chr15.63692369.-	chr15	63692369	63692370	-	0	NA	Intergenic	AluSx1|SINE|Alu	18294	NM_206925	771	Hs.210995	NM_001218		CA12	CAXII|HsT18816	carbonic anhydrase XII	protein-coding
chrX.141491543.+	chrX	141491543	141491544	+	0	NA	Intergenic	AluY|SINE|Alu	-198467	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr4.106689328.+	chr4	106689328	106689329	+	0	NA	"intron (NM_024751, intron 5 of 11)"	AluY|SINE|Alu	57358	NM_001031720	79807	Hs.161429	NM_001031720	ENSG00000138780	GSTCD	-	"glutathione S-transferase, C-terminal domain containing"	protein-coding
chr22.24237301.+	chr22	24237301	24237302	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	736	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr2.48010417.+	chr2	48010417	48010418	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	196	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr19.11060582.-	chr19	11060582	11060583	-	0	NA	Intergenic	AluY|SINE|Alu	11016	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr8.143373431.-	chr8	143373431	143373432	-	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	-93714	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr3.123619803.-	chr3	123619803	123619804	-	0	NA	Intergenic	AluSc8|SINE|Alu	16654	NM_053025	4638	Hs.477375	NM_053025	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
chr10.133869139.+	chr10	133869139	133869140	+	0	NA	Intergenic	Intergenic	-49174	NM_001105521	282973	Hs.106254	NM_001105521	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
chr22.24621465.-	chr22	24621465	24621466	-	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	-19645	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr1.17034297.+	chr1	17034297	17034298	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12355	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr12.111714703.+	chr12	111714703	111714704	+	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	92222	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr19.1809860.-	chr19	1809860	1809861	-	0	NA	"intron (NR_047593, intron 3 of 28)"	"intron (NR_047593, intron 3 of 28)"	-2376	NM_001178002	148229	Hs.306212	NM_001178002	ENSG00000130270	ATP8B3	ATPIK	"ATPase, aminophospholipid transporter, class I, type 8B, member 3"	protein-coding
chr9.131639074.-	chr9	131639074	131639075	-	0	NA	"intron (NM_001122671, intron 1 of 12)"	AluSx|SINE|Alu	-5280	NM_001122672	883	Hs.495250	NM_001122671	ENSG00000171097	CCBL1	GTK|KAT1|KATI	"cysteine conjugate-beta lyase, cytoplasmic"	protein-coding
chr9.88491252.+	chr9	88491252	88491253	+	0	NA	Intergenic	AluYc|SINE|Alu	-64805	NM_024635	60560	Hs.436098	NM_024635	ENSG00000135040	NAA35	MAK10|bA379P1.1	"N(alpha)-acetyltransferase 35, NatC auxiliary subunit"	protein-coding
chr7.100044745.+	chr7	100044745	100044746	+	0	NA	Intergenic	Intergenic	-10651	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr2.61306958.-	chr2	61306958	61306959	-	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	-13595	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr1.212898508.+	chr1	212898508	212898509	+	0	NA	TTS (NM_001042549)	TTS (NM_001042549)	-25181	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr11.68832728.+	chr11	68832728	68832729	+	0	NA	"intron (NM_139075, intron 7 of 24)"	"intron (NM_139075, intron 7 of 24)"	16378	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chr20.62111449.+	chr20	62111449	62111450	+	0	NA	Intergenic	CpG	-7456	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr5.178032033.-	chr5	178032033	178032034	-	0	NA	"intron (NM_020666, intron 11 of 12)"	AluSx1|SINE|Alu	14477	NM_173465	91522	Hs.660026	NM_173465	ENSG00000050767	COL23A1	-	"collagen, type XXIII, alpha 1"	protein-coding
chr22.50871784.-	chr22	50871784	50871785	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41680	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chrX.29649827.+	chrX	29649827	29649828	+	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	-583848	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr7.1798917.-	chr7	1798917	1798918	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50119	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr5.87348571.-	chr5	87348571	87348572	-	0	NA	Intergenic	L1PA2|LINE|L1	-216094	NM_153354	153396	Hs.379972	NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
chr10.63588376.-	chr10	63588376	63588377	-	0	NA	Intergenic	AluSg|SINE|Alu	72637	NM_032199	84159	Hs.535297	NM_001244638	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
chr2.155617323.+	chr2	155617323	155617324	+	0	NA	"intron (NM_002239, intron 2 of 2)"	AluY|SINE|Alu	62230	NM_001260509	3760	Hs.591606	NM_001260508	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	"potassium inwardly-rectifying channel, subfamily J, member 3"	protein-coding
chr12.77339565.-	chr12	77339565	77339566	-	0	NA	Intergenic	AluY|SINE|Alu	66766	NM_001321	1466	Hs.530904	NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine-rich protein 2	protein-coding
chr1.217394668.-	chr1	217394668	217394669	-	0	NA	Intergenic	AluSq2|SINE|Alu	83571	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chrX.68956254.+	chrX	68956254	68956255	+	0	NA	"intron (NM_001005613, intron 2 of 2)"	AluSx|SINE|Alu	120343	NM_001005609	1896	Hs.105407	NM_001005609	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED	ectodysplasin A	protein-coding
chr7.21370273.-	chr7	21370273	21370274	-	0	NA	Intergenic	MER52D|LTR|ERV1	97416	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr7.132214488.+	chr7	132214488	132214489	+	0	NA	"intron (NM_181775, intron 2 of 4)"	AluY|SINE|Alu	46835	NM_020911	91584	Hs.511454	NM_001105543	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
chrX.30619884.+	chrX	30619884	30619885	+	0	NA	Intergenic	SVA_F|Other|Other	-23851	NM_025159	80231	Hs.665009	NM_025159	ENSG00000120280	CXorf21	-	chromosome X open reading frame 21	protein-coding
chr4.187112818.+	chr4	187112818	187112819	+	0	NA	promoter-TSS (NR_046264)	promoter-TSS (NR_046264)	144	NM_207352	285440	Hs.587231	NM_207352		CYP4V2	BCD|CYP4AH1	"cytochrome P450, family 4, subfamily V, polypeptide 2"	protein-coding
chr2.24809073.-	chr2	24809073	24809074	-	0	NA	"intron (NM_003743, intron 1 of 20)"	AluSx1|SINE|Alu	-1727	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
chr6.25752961.+	chr6	25752961	25752962	+	0	NA	Intergenic	AluY|SINE|Alu	-1966	NM_005495	10050	Hs.282931	NM_005495	ENSG00000146039	SLC17A4	KAIA2138	"solute carrier family 17 (sodium phosphate), member 4"	protein-coding
chr7.91257040.-	chr7	91257040	91257041	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252976	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr1.156527508.-	chr1	156527508	156527509	-	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	-14888	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr10.6985555.+	chr10	6985555	6985556	+	0	NA	Intergenic	AluSx1|SINE|Alu	163995	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr8.7877740.+	chr8	7877740	7877741	+	0	NA	Intergenic	Intergenic	-22697	NR_003668	641517	Hs.616079	NR_003668	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	"defensin, beta 109, pseudogene 1B"	pseudo
chr12.131551502.-	chr12	131551502	131551503	-	0	NA	"intron (NM_198827, intron 13 of 24)"	L2a|LINE|L2	98054	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LOC116437	-	uncharacterized LOC116437	miscRNA
chr21.47403480.-	chr21	47403480	47403481	-	0	NA	"intron (NM_001848, intron 2 of 34)"	"intron (NM_001848, intron 2 of 34)"	-1817	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr11.189858.+	chr11	189858	189859	+	0	NA	Intergenic	TAR1|Satellite|telo	-3222	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	"secretoglobin, family 1C, member 1-like"	protein-coding
chr8.142657066.-	chr8	142657066	142657067	-	0	NA	Intergenic	Intergenic	139736	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat-like repeat family member 5	protein-coding
chr17.18179006.+	chr17	18179006	18179007	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14582	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr20.24450367.-	chr20	24450367	24450368	-	0	NA	"5' UTR (NM_024893, exon 1 of 4)"	"5' UTR (NM_024893, exon 1 of 4)"	-532	NM_024893	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
chrX.70865466.-	chrX	70865466	70865467	-	0	NA	"intron (NR_001568, intron 1 of 3)"	SVA_B|Other|Other	27099	NM_001142797	2833	Hs.198252	NM_001142797	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	chemokine (C-X-C motif) receptor 3	protein-coding
chr17.32908205.+	chr17	32908205	32908206	+	0	NA	"intron (NM_207313, intron 1 of 9)"	CpG	437	NM_207313	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	-	transmembrane protein 132E	protein-coding
chr3.85742653.-	chr3	85742653	85742654	-	0	NA	"intron (NM_001256503, intron 2 of 9)"	AluYk4|SINE|Alu	32979	NM_153184	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr1.3185972.+	chr1	3185972	3185973	+	0	NA	"intron (NM_199454, intron 3 of 16)"	"intron (NM_199454, intron 3 of 16)"	141433	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	miscRNA
chr7.100719573.-	chr7	100719573	100719574	-	0	NA	Intergenic	Intergenic	9213	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr17.12456643.+	chr17	12456643	12456644	+	0	NA	"intron (NR_034144, intron 1 of 2)"	AluY|SINE|Alu	3358	NR_034144	284034	Hs.376614	NR_034144	ENSG00000179136	LINC00670	-	long intergenic non-protein coding RNA 670	miscRNA
chr4.885531.+	chr4	885531	885532	+	0	NA	"intron (NM_005255, intron 9 of 27)"	"intron (NM_005255, intron 9 of 27)"	40643	NM_005255	2580	Hs.369607	NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
chr14.97183895.-	chr14	97183895	97183896	-	0	NA	Intergenic	AluY|SINE|Alu	79789	NM_003384	7443	Hs.422662	NM_003384	ENSG00000100749	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
chr20.34266478.+	chr20	34266478	34266479	+	0	NA	"intron (NR_037570, intron 8 of 13)"	AluSx|SINE|Alu	-13600	NM_152928	8904	Hs.700188	NM_001198863	ENSG00000214078	CPNE1	COPN1|CPN1	copine I	protein-coding
chr11.119091833.+	chr11	119091833	119091834	+	0	NA	"intron (NM_005188, intron 1 of 15)"	AluSz|SINE|Alu	14847	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	"Cbl proto-oncogene, E3 ubiquitin protein ligase"	protein-coding
chr11.119494743.+	chr11	119494743	119494744	+	0	NA	Intergenic	Intergenic	104692	NM_203286	5818	Hs.334846	NM_002855	ENSG00000110400	PVRL1	CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
chr17.8252971.+	chr17	8252971	8252972	+	0	NA	Intergenic	AluSq2|SINE|Alu	9783	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr19.3810427.-	chr19	3810427	3810428	-	0	NA	"intron (NM_015174, intron 16 of 18)"	"intron (NM_015174, intron 16 of 18)"	8617	NM_002378	4145	Hs.631845	NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
chr12.26964567.-	chr12	26964567	26964568	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21564	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr22.20204050.+	chr22	20204050	20204051	+	0	NA	Intergenic	AluSx1|SINE|Alu	10195	NR_026919	150197	Hs.635544	NM_152508		LOC150197	-	uncharacterized LOC150197	miscRNA
chr3.36421978.-	chr3	36421978	36421979	-	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	119	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr15.45457845.-	chr15	45457845	45457846	-	0	NA	TTS (NM_017434)	TTS (NM_017434)	-35528	NM_138356	90525	Hs.310399	NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
chr9.14830731.-	chr9	14830731	14830732	-	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	51200	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr2.61693036.+	chr2	61693036	61693037	+	0	NA	"intron (NM_014709, intron 1 of 79)"	AluY|SINE|Alu	4813	NM_014709	9736	Hs.644708	NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
chr14.101189484.+	chr14	101189484	101189485	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3718	NM_003836	8788	Hs.533717	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta-like 1 homolog (Drosophila)	protein-coding
chr13.20343683.+	chr13	20343683	20343684	+	0	NA	"intron (NR_044998, intron 2 of 7)"	AluY|SINE|Alu	13476	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr20.3748530.+	chr20	3748530	3748531	+	0	NA	promoter-TSS (NM_001258429)	promoter-TSS (NM_001258429)	-78	NM_001258430	54976	Hs.274422	NM_017874	ENSG00000101220	C20orf27	-	chromosome 20 open reading frame 27	protein-coding
chr2.207270693.-	chr2	207270693	207270694	-	0	NA	Intergenic	AluY|SINE|Alu	37675	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr16.75369588.-	chr16	75369588	75369589	-	0	NA	"intron (NM_006324, intron 5 of 6)"	AluY|SINE|Alu	67637	NM_001170715	9564	Hs.479747	NM_001170714	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
chr2.101959020.+	chr2	101959020	101959021	+	0	NA	Intergenic	Intergenic	33108	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	miscRNA
chr7.157129521.+	chr7	157129521	157129522	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-189	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr10.101292627.+	chr10	101292627	101292628	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	-63	NM_145285	159296	Hs.243272	NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
chr14.77227748.-	chr14	77227748	77227749	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	487	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr9.126777929.+	chr9	126777929	126777930	+	0	NA	"intron (NM_004789, intron 3 of 4)"	CpG-27001	4040	NM_004789	9355	Hs.696425	NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
chr12.65768919.-	chr12	65768919	65768920	-	0	NA	"intron (NM_001193460, intron 6 of 7)"	AluY|SINE|Alu	-96152	NM_001193461	253827	Hs.339024	NM_001031679	ENSG00000174099	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
chr14.84437074.+	chr14	84437074	84437075	+	0	NA	Intergenic	AluY|SINE|Alu	-1559414	NM_013231	23768	Hs.744139	NM_013231	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chr10.99397977.-	chr10	99397977	99397978	-	0	NA	Intergenic	AluSq|SINE|Alu	2466	NM_018425	55361	Hs.25300	NM_018425	ENSG00000155252	PI4K2A	PI4KII|PIK42A|RP11-548K23.6	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
chr13.21644872.-	chr13	21644872	21644873	-	0	NA	Intergenic	AluSx|SINE|Alu	9150	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr9.66486342.+	chr9	66486342	66486343	+	0	NA	Intergenic	Intergenic	-7927	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr19.1917061.-	chr19	1917061	1917062	-	0	NA	"intron (NM_079834, intron 2 of 6)"	AluSx1|SINE|Alu	-11688	NM_079834	113178	Hs.144980	NM_079834	ENSG00000227500	SCAMP4	SCAMP-4	secretory carrier membrane protein 4	protein-coding
chr10.24858095.-	chr10	24858095	24858096	-	0	NA	Intergenic	AluY|SINE|Alu	-154502	NM_020824	57584	Hs.524195	NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
chr17.26336760.-	chr17	26336760	26336761	-	0	NA	Intergenic	AluSz|SINE|Alu	32928	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo-like kinase	protein-coding
chr3.149374893.+	chr3	149374893	149374894	+	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	919	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr1.226350785.+	chr1	226350785	226350786	+	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	23638	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr14.50838446.+	chr14	50838446	50838447	+	0	NA	"intron (NM_004196, intron 1 of 8)"	MER52A|LTR|ERV1	24171	NM_004196	8814	Hs.679430	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
chr2.16350239.-	chr2	16350239	16350240	-	0	NA	Intergenic	Intergenic	268394	NR_026766	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|NCYM|NYCM	MYCN opposite strand/antisense RNA	miscRNA
chr2.192374875.-	chr2	192374875	192374876	-	0	NA	Intergenic	AluY|SINE|Alu	167923	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr11.126146037.+	chr11	126146037	126146038	+	0	NA	"exon (NM_017547, exon 8 of 11)"	"exon (NM_017547, exon 8 of 11)"	-6945	NM_001039661	114609	Hs.537126	NM_001039661	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	toll-interleukin 1 receptor (TIR) domain containing adaptor protein	protein-coding
chrX.53123425.-	chrX	53123425	53123426	-	0	NA	Intergenic	CpG	-11883	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr4.84864619.+	chr4	84864619	84864620	+	0	NA	Intergenic	SVA_D|Other|Other	407149	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chr1.53335614.-	chr1	53335614	53335615	-	0	NA	"intron (NM_001004339, intron 8 of 13)"	SVA_D|Other|Other	-27431	NM_001004339	440590	Hs.658458	NM_001004339	ENSG00000203995	ZYG11A	ZYG11	"zyg-11 family member A, cell cycle regulator"	protein-coding
chr10.125611166.+	chr10	125611166	125611167	+	0	NA	"intron (NM_198148, intron 3 of 13)"	AluSc8|SINE|Alu	40334	NM_198148	119587	Hs.656887	NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	"carboxypeptidase X (M14 family), member 2"	protein-coding
chr1.226350657.-	chr1	226350657	226350658	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23766	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr11.18743344.-	chr11	18743344	18743345	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4433	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr10.42385204.-	chr10	42385204	42385205	-	0	NA	Intergenic	HSATII|Satellite|Satellite	-478289	NR_024380	441666	Hs.255729	NR_024380		LOC441666	-	zinc finger protein 91 pseudogene	pseudo
chr11.10127939.+	chr11	10127939	10127940	+	0	NA	"intron (NM_030962, intron 2 of 39)"	AluSx|SINE|Alu	187815	NM_030962	81846	Hs.577252	NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
chr19.19644717.+	chr19	19644717	19644718	+	0	NA	"intron (NM_198537, intron 3 of 6)"	"intron (NM_198537, intron 3 of 6)"	-4357	NM_153221	148113	Hs.279574	NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
chr10.6985572.-	chr10	6985572	6985573	-	0	NA	Intergenic	AluSx1|SINE|Alu	-164012	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	miscRNA
chr7.158504086.+	chr7	158504086	158504087	+	0	NA	Intergenic	AluY|SINE|Alu	-6566	NM_017760	54892	Hs.18616	NM_017760	ENSG00000146918	NCAPG2	CAP-G2|LUZP5|MTB|hCAP-G2	"non-SMC condensin II complex, subunit G2"	protein-coding
chr3.61188821.+	chr3	61188821	61188822	+	0	NA	"intron (NM_001166243, intron 1 of 9)"	AluY|SINE|Alu	48312	NM_002012	2272	Hs.655995	NM_001166243	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
chr7.55379447.+	chr7	55379447	55379448	+	0	NA	Intergenic	SVA_D|Other|Other	-53694	NM_018697	55915	Hs.706612	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
chr5.72638485.-	chr5	72638485	72638486	-	0	NA	Intergenic	AluSc8|SINE|Alu	-105867	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC4	forkhead box D1	protein-coding
chr20.45991176.+	chr20	45991176	45991177	+	0	NA	Intergenic	AluSz|SINE|Alu	-5702	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr12.132623230.+	chr12	132623230	132623231	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5650	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr7.157451855.+	chr7	157451855	157451856	+	0	NA	"intron (NM_130842, intron 12 of 21)"	"intron (NM_130842, intron 12 of 21)"	-84741	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr17.79564841.-	chr17	79564841	79564842	-	0	NA	"intron (NM_017921, intron 9 of 16)"	AluY|SINE|Alu	-39297	NM_017921	55666	Hs.464333	NM_017921	ENSG00000182446	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
chr11.2213890.-	chr11	2213890	2213891	-	0	NA	Intergenic	Intergenic	-19597	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr7.124427202.-	chr7	124427202	124427203	-	0	NA	"intron (NM_001024603, intron 2 of 3)"	AluY|SINE|Alu	-3662	NM_001024603	154872	Hs.444163	NM_001024603		LOC154872	-	uncharacterized protein LOC154872	protein-coding
chr2.207036600.-	chr2	207036600	207036601	-	0	NA	Intergenic	SVA_D|Other|Other	-9648	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr1.110881106.-	chr1	110881106	110881107	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-687	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr1.97799161.-	chr1	97799161	97799162	-	0	NA	"intron (NM_000110, intron 16 of 22)"	AluY|SINE|Alu	-237682	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	miscRNA
chr6.33500230.-	chr6	33500230	33500231	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47840	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr7.157406139.-	chr7	157406139	157406140	-	0	NA	"intron (NM_130842, intron 14 of 21)"	CpG	39025	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr19.47364560.-	chr19	47364560	47364561	-	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	10357	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr16.31932481.-	chr16	31932481	31932482	-	0	NA	Intergenic	AluY|SINE|Alu	-47402	NM_001265588	10308	Hs.460645	NM_001265588	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
chr14.105158945.+	chr14	105158945	105158946	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	3002	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr7.156795083.+	chr7	156795083	156795084	+	0	NA	Intergenic	Intergenic	7046	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr19.45524635.-	chr19	45524635	45524636	-	0	NA	"intron (NM_006509, intron 3 of 10)"	AluY|SINE|Alu	17663	NM_007056	11129	Hs.466917	NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4-associating serine/arginine rich protein	protein-coding
chr1.212898494.+	chr1	212898494	212898495	+	0	NA	Intergenic	SVA_B|Other|Other	-25167	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	"basic leucine zipper transcription factor, ATF-like 3"	protein-coding
chr17.78559335.-	chr17	78559335	78559336	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40710	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr12.56394845.+	chr12	56394845	56394846	+	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	3802	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr2.241363393.-	chr2	241363393	241363394	-	0	NA	Intergenic	Intergenic	11722	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr1.6471006.-	chr1	6471006	6471007	-	0	NA	Intergenic	AluSz|SINE|Alu	-8973	NM_019089	54626	Hs.118727	NM_019089	ENSG00000069812	HES2	bHLHb40	hairy and enhancer of split 2 (Drosophila)	protein-coding
chr9.95526671.+	chr9	95526671	95526672	+	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	412	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr19.46156157.-	chr19	46156157	46156158	-	0	NA	Intergenic	AluY|SINE|Alu	7382	NM_001193268	24139	Hs.24178	NM_001193268	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	echinoderm microtubule associated protein like 2	protein-coding
chr5.22207074.+	chr5	22207074	22207075	+	0	NA	"intron (NM_004061, intron 4 of 14)"	AluY|SINE|Alu	64613	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	"pro-melanin-concentrating hormone-like 1, pseudogene"	pseudo
chr14.105618911.-	chr14	105618911	105618912	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16250	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr4.186887676.-	chr4	186887676	186887677	-	0	NA	Intergenic	AluSx1|SINE|Alu	9806	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr16.614134.+	chr16	614134	614135	+	0	NA	"exon (NM_145270, exon 2 of 3)"	"exon (NM_145270, exon 2 of 3)"	-2898	NM_176677	283948	Hs.664267	NM_176677	ENSG00000257108	NHLRC4	-	NHL repeat containing 4	protein-coding
chr7.1001913.-	chr7	1001913	1001914	-	0	NA	Intergenic	Intergenic	7624	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr10.135008736.-	chr10	135008736	135008737	-	0	NA	"intron (NM_152643, intron 9 of 29)"	MER63C|DNA|hAT-Blackjack	-34765	NM_152643	85442	Hs.530685	NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
chr1.156527512.+	chr1	156527512	156527513	+	0	NA	"intron (NM_178229, intron 11 of 37)"	SVA_F|Other|Other	14884	NM_178229	128239	Hs.591495	NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
chr2.45395912.-	chr2	45395912	45395913	-	0	NA	Intergenic	CpG	-86168	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	UNQ6975	-	putative uncharacterized protein UNQ6975/PRO21958	miscRNA
chr15.38434907.-	chr15	38434907	38434908	-	0	NA	Intergenic	L1PA3|LINE|L1	110145	NM_152594	161742	Hs.525781	NM_152594	ENSG00000166068	SPRED1	NFLS|hSpred1|spred-1	"sprouty-related, EVH1 domain containing 1"	protein-coding
chr2.47661274.+	chr2	47661274	47661275	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	31068	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr7.128939327.+	chr7	128939327	128939328	+	0	NA	"intron (NM_001130720, intron 1 of 16)"	AluY|SINE|Alu	-68637	NM_001130723	23382	Hs.600789	NM_001130720	ENSG00000158467	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
chrM.9299.+	chrM	9299	9300	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr14.104339768.-	chr14	104339768	104339769	-	0	NA	Intergenic	AluSz|SINE|Alu	-25710	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr20.41089730.-	chr20	41089730	41089731	-	0	NA	"intron (NM_133170, intron 8 of 31)"	AluSp|SINE|Alu	-728827	NM_007050	11122	Hs.526879	NM_007050	ENSG00000196090	PTPRT	RPTPrho	"protein tyrosine phosphatase, receptor type, T"	protein-coding
chr1.79749360.-	chr1	79749360	79749361	-	0	NA	Intergenic	AluSx|SINE|Alu	276865	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr2.43707922.+	chr2	43707922	43707923	+	0	NA	"intron (NM_022065, intron 26 of 37)"	AluSx3|SINE|Alu	115191	NM_001083953	63892	Hs.369592	NM_001083953	ENSG00000115970	THADA	GITA	thyroid adenoma associated	protein-coding
chr2.128545841.-	chr2	128545841	128545842	-	0	NA	"intron (NM_018383, intron 1 of 21)"	SVA_F|Other|Other	-22920	NM_001006622	55339	Hs.554831	NM_001006622	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
chr14.93690115.-	chr14	93690115	93690116	-	0	NA	"intron (NR_038150, intron 9 of 9)"	CpG	16656	NM_032490	84520	Hs.20142	NM_032490	ENSG00000170270	C14orf142	PNAS-127	chromosome 14 open reading frame 142	protein-coding
chr15.29132965.+	chr15	29132965	29132966	+	0	NA	Intergenic	Intergenic	-39144	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr7.130586407.-	chr7	130586407	130586408	-	0	NA	"intron (NR_034120, intron 2 of 3)"	"intron (NR_034120, intron 2 of 3)"	-11662	NR_034120	646329	Hs.150556	NR_034120	ENSG00000226380	LOC646329	-	uncharacterized LOC646329	miscRNA
chr10.12405343.+	chr10	12405343	12405344	+	0	NA	"intron (NM_020397, intron 1 of 9)"	AluSx1|SINE|Alu	13760	NM_153498	57118	Hs.659517	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
chrX.129230993.+	chrX	129230993	129230994	+	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	13482	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr1.1192076.-	chr1	1192076	1192077	-	0	NA	"intron (NM_194315, intron 6 of 7)"	AluY|SINE|Alu	9974	NM_001014980	388581	Hs.197613	NM_001014980	ENSG00000184163	FAM132A	C1QDC2|C1QTNF12|CTRP12	"family with sequence similarity 132, member A"	protein-coding
chr20.62108066.+	chr20	62108066	62108067	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4073	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chrM.16318.+	chrM	16318	16319	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr11.133788092.+	chr11	133788092	133788093	+	0	NA	"3' UTR (NM_014987, exon 20 of 20)"	"3' UTR (NM_014987, exon 20 of 20)"	-16457	NR_024344	283174	Hs.504370	NM_001001873		LOC283174	-	uncharacterized LOC283174	miscRNA
chr11.44361803.-	chr11	44361803	44361804	-	0	NA	Intergenic	AluJb|SINE|Alu	30087	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr8.41261754.-	chr8	41261754	41261755	-	0	NA	Intergenic	Intergenic	86327	NM_016099	51125	Hs.654773	NM_001002296	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
chr4.188471132.-	chr4	188471132	188471133	-	0	NA	Intergenic	AluSg|SINE|Alu	44365	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	miscRNA
chr8.104851164.+	chr8	104851164	104851165	+	0	NA	"intron (NM_014677, intron 1 of 21)"	AluY|SINE|Alu	19748	NM_014677	9699	Hs.655271	NM_001100117		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
chr12.132623252.+	chr12	132623252	132623253	+	0	NA	"3' UTR (NM_175066, exon 15 of 15)"	"3' UTR (NM_175066, exon 15 of 15)"	5628	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr12.650247.+	chr12	650247	650248	+	0	NA	"intron (NM_173593, intron 3 of 19)"	"intron (NM_173593, intron 3 of 19)"	80704	NM_173593	283358	Hs.504416	NM_173593		B4GALNT3	-	"beta-1,4-N-acetyl-galactosaminyl transferase 3"	protein-coding
chr20.62479290.+	chr20	62479290	62479291	+	0	NA	Intergenic	Intergenic	-13276	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr19.2424676.+	chr19	2424676	2424677	+	0	NA	TTS (NM_012458)	TTS (NM_012458)	3199	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr5.176279219.-	chr5	176279219	176279220	-	0	NA	"intron (NM_133369, intron 1 of 14)"	"intron (NM_133369, intron 1 of 14)"	-41659	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 homolog A (C. elegans)	protein-coding
chr20.43040160.-	chr20	43040160	43040161	-	0	NA	"intron (NM_178850, intron 3 of 7)"	"intron (NM_178850, intron 3 of 7)"	-3400	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	miscRNA
chr16.89608221.+	chr16	89608221	89608222	+	0	NA	"intron (NM_003119, intron 9 of 16)"	"intron (NM_003119, intron 9 of 16)"	-18844	NM_001243131	6137	Hs.410817	NM_000977		RPL13	BBC1|D16S444E|D16S44E|L13	ribosomal protein L13	protein-coding
chr7.152109408.-	chr7	152109408	152109409	-	0	NA	"intron (NM_170606, intron 1 of 58)"	AluSx1|SINE|Alu	-23682	NM_170606	58508	Hs.647120	NM_170606	ENSG00000055609	MLL3	HALR|KMT2C	myeloid/lymphoid or mixed-lineage leukemia 3	protein-coding
chr19.12606202.-	chr19	12606202	12606203	-	0	NA	Intergenic	CpG	10570	NM_152601	163051	Hs.631623	NM_001145647	ENSG00000196826	ZNF709	-	zinc finger protein 709	protein-coding
chr19.35418181.-	chr19	35418181	35418182	-	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	-374	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr2.30248628.+	chr2	30248628	30248629	+	0	NA	Intergenic	AluY|SINE|Alu	-104151	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr18.48115826.-	chr18	48115826	48115827	-	0	NA	"intron (NM_002747, intron 1 of 5)"	AluY|SINE|Alu	-29342	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK	mitogen-activated protein kinase 4	protein-coding
chrX.81762792.-	chrX	81762792	81762793	-	0	NA	Intergenic	AluY|SINE|Alu	1000477	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr16.88074413.+	chr16	88074413	88074414	+	0	NA	"intron (NM_001173541, intron 10 of 11)"	"intron (NM_001173541, intron 10 of 11)"	70789	NM_001173543	54971	Hs.461705	NM_001173539	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
chr9.130734364.+	chr9	130734364	130734365	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8448	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr17.7298077.+	chr17	7298077	7298078	+	0	NA	promoter-TSS (NM_020360)	promoter-TSS (NM_020360)	85	NM_020360	57048	Hs.736428	NM_001201576	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
chr8.125234399.+	chr8	125234399	125234400	+	0	NA	Intergenic	AluSx3|SINE|Alu	150541	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
chr11.1122281.+	chr11	1122281	1122282	+	0	NA	Intergenic	Intergenic	47406	NM_002457	4583	Hs.315	NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	"mucin 2, oligomeric mucus/gel-forming"	protein-coding
chr2.11411937.-	chr2	11411937	11411938	-	0	NA	"intron (NM_004850, intron 3 of 32)"	AluY|SINE|Alu	-72774	NM_004850	9475	Hs.681743	NM_004850		ROCK2	ROCK-II	"Rho-associated, coiled-coil containing protein kinase 2"	protein-coding
chr12.105375610.-	chr12	105375610	105375611	-	0	NA	Intergenic	AluSx3|SINE|Alu	4488	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr9.86571460.+	chr9	86571460	86571461	+	0	NA	"5' UTR (NM_032307, exon 1 of 4)"	"5' UTR (NM_032307, exon 1 of 4)"	203	NM_032307	84267	Hs.208914	NM_032307	ENSG00000165118	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
chr18.12067222.-	chr18	12067222	12067223	-	0	NA	Intergenic	CpG	26626	NM_001277333	342850	Hs.448906	XM_001715728	ENSG00000181626	ANKRD62	DKFZp779B1634	ankyrin repeat domain 62	protein-coding
chr19.52640495.+	chr19	52640495	52640496	+	0	NA	"intron (NM_178523, intron 1 of 3)"	AluY|SINE|Alu	2696	NM_178523	90317	Hs.731969	NM_178523		ZNF616	-	zinc finger protein 616	protein-coding
chr16.1824199.-	chr16	1824199	1824200	-	0	NA	"intron (NM_001257370, intron 2 of 7)"	"intron (NM_001257370, intron 2 of 7)"	-970	NM_001257370	197342	Hs.7247	NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic endonuclease 1 homolog 2 (S. pombe)	protein-coding
chr15.29130794.+	chr15	29130794	29130795	+	0	NA	Intergenic	CpG	-36973	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr17.1453684.-	chr17	1453684	1453685	-	0	NA	"intron (NM_006224, intron 3 of 11)"	L2b|LINE|L2	-12426	NM_006224	5306	Hs.429819	NM_006224	ENSG00000174238	PITPNA	PI-TPalpha|PITPN|VIB1A	"phosphatidylinositol transfer protein, alpha"	protein-coding
chr12.118282894.-	chr12	118282894	118282895	-	0	NA	"intron (NM_173598, intron 3 of 19)"	AluY|SINE|Alu	-123134	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
chr9.127626597.+	chr9	127626597	127626598	+	0	NA	Intergenic	AluSx|SINE|Alu	-2357	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr5.171395355.+	chr5	171395355	171395356	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38522	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr4.112518749.+	chr4	112518749	112518750	+	0	NA	Intergenic	AluY|SINE|Alu	-547804	NM_152400	132720	Hs.23439	NM_152400	ENSG00000174749	C4orf32	-	chromosome 4 open reading frame 32	protein-coding
chr19.44489492.-	chr19	44489492	44489493	-	0	NA	"intron (NM_001260486, intron 1 of 4)"	AluSz|SINE|Alu	-1170	NM_003445	7711	Hs.502127	NM_001260486	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
chr7.1798942.+	chr7	1798942	1798943	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	50144	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr5.177811432.+	chr5	177811432	177811433	+	0	NA	"intron (NM_173465, intron 2 of 28)"	"intron (NM_173465, intron 2 of 28)"	-151629	NM_153373	85007	Hs.248746	NM_032921	ENSG00000175309	AGXT2L2	PHLU	alanine-glyoxylate aminotransferase 2-like 2	protein-coding
chr19.59016600.-	chr19	59016600	59016601	-	0	NA	"intron (NM_012254, intron 3 of 9)"	AluSx1|SINE|Alu	-6832	NM_012254	10998	Hs.292177	NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	"solute carrier family 27 (fatty acid transporter), member 5"	protein-coding
chr20.60943456.-	chr20	60943456	60943457	-	0	NA	Intergenic	Intergenic	1088	NM_005560	3911	Hs.473256	NM_005560	ENSG00000130702	LAMA5	-	"laminin, alpha 5"	protein-coding
chr19.4065762.-	chr19	4065762	4065763	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1054	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr11.47459678.-	chr11	47459678	47459679	-	0	NA	"intron (NM_032645, intron 5 of 5)"	"intron (NM_032645, intron 5 of 5)"	-11052	NM_032645	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
chr2.241622492.-	chr2	241622492	241622493	-	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	175	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
chr4.1655012.-	chr4	1655012	1655013	-	0	NA	"intron (NM_001013622, intron 4 of 4)"	"intron (NM_001013622, intron 4 of 4)"	-30706	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr1.110881118.-	chr1	110881118	110881119	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-675	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr10.133203410.-	chr10	133203410	133203411	-	0	NA	Intergenic	Intergenic	93426	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr10.94122267.+	chr10	94122267	94122268	+	0	NA	Intergenic	AluSg|SINE|Alu	-56151	NR_038243	100507674	Hs.742186	NR_038243		MARK2P9	-	MAP/microtubule affinity-regulating kinase 2 pseudogene 9	pseudo
chr19.18057771.-	chr19	18057771	18057772	-	0	NA	Intergenic	AluSx|SINE|Alu	4340	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1"	protein-coding
chr2.10424797.-	chr2	10424797	10424798	-	0	NA	Intergenic	Intergenic	18233	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr7.157129484.+	chr7	157129484	157129485	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-226	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr19.2422138.-	chr19	2422138	2422139	-	0	NA	"exon (NM_182973, exon 13 of 17)"	"exon (NM_182973, exon 13 of 17)"	-5737	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr6.135685296.+	chr6	135685296	135685297	+	0	NA	"intron (NM_001134831, intron 23 of 28)"	SVA_D|Other|Other	133607	NM_017651	54806	Hs.386684	NM_001134830	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
chr1.110881108.-	chr1	110881108	110881109	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-685	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr18.70912362.-	chr18	70912362	70912363	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19371	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr2.218944868.-	chr2	218944868	218944869	-	0	NA	"intron (NR_034176, intron 11 of 13)"	"intron (NR_034176, intron 11 of 13)"	-11130	NM_198483	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
chr2.101245807.+	chr2	101245807	101245808	+	0	NA	Intergenic	Intergenic	66389	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr2.229496717.+	chr2	229496717	229496718	+	0	NA	Intergenic	AluYc|SINE|Alu	-450356	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chr18.71336754.+	chr18	71336754	71336755	+	0	NA	Intergenic	Intergenic	344578	NR_038340	100505817	Hs.197042	NR_038340	ENSG00000261780	LOC100505817	-	uncharacterized LOC100505817	miscRNA
chr13.81676520.-	chr13	81676520	81676521	-	0	NA	Intergenic	SVA_D|Other|Other	761434	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
chr7.158218578.-	chr7	158218578	158218579	-	0	NA	"intron (NM_130842, intron 1 of 21)"	CpG	-106927	NR_030325	693180		NR_030325		MIR595	MIRN595|hsa-mir-595	microRNA 595	miscRNA
chr22.46504416.+	chr22	46504416	46504417	+	0	NA	"intron (NR_027033, intron 4 of 5)"	"intron (NR_027033, intron 4 of 5)"	-4213	NR_029478	406883		NR_029478	ENSG00000198986	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	miscRNA
chr5.40801255.-	chr5	40801255	40801256	-	0	NA	Intergenic	SVA_E|Other|Other	2958	NM_006251	5562	Hs.43322	NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPKa1	"protein kinase, AMP-activated, alpha 1 catalytic subunit"	protein-coding
chr8.26240523.+	chr8	26240523	26240524	+	0	NA	promoter-TSS (NM_004331)	promoter-TSS (NM_004331)	0	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr2.192374884.-	chr2	192374884	192374885	-	0	NA	Intergenic	AluY|SINE|Alu	167914	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr2.48784476.-	chr2	48784476	48784477	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	SVA_F|Other|Other	11683	NM_172311	286749	Hs.732016	NM_001198593	ENSG00000068781	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
chr2.237068278.-	chr2	237068278	237068279	-	0	NA	Intergenic	CpG	-8374	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr11.342907.-	chr11	342907	342908	-	0	NA	Intergenic	AluSz|SINE|Alu	21993	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr19.1871369.-	chr19	1871369	1871370	-	0	NA	Intergenic	Intergenic	7805	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr6.117804125.-	chr6	117804125	117804126	-	0	NA	"intron (NM_173674, intron 1 of 14)"	CpG	-305	NM_173674	285761	Hs.658304	NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	"discoidin, CUB and LCCL domain containing 1"	protein-coding
chr13.49550719.-	chr13	49550719	49550720	-	0	NA	"intron (NM_001079673, intron 1 of 25)"	CpG	-671	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr2.46769108.-	chr2	46769108	46769109	-	0	NA	promoter-TSS (NM_012249)	promoter-TSS (NM_012249)	759	NM_012249	23433	Hs.709193	NM_012249		RHOQ	ARHQ|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
chr22.24093336.-	chr22	24093336	24093337	-	0	NA	promoter-TSS (NM_021916)	promoter-TSS (NM_021916)	57	NM_021916	7621	Hs.382874	NM_021916	ENSG00000187792	ZNF70	Cos17	zinc finger protein 70	protein-coding
chr16.88453724.-	chr16	88453724	88453725	-	0	NA	Intergenic	CpG	40155	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr15.52587729.-	chr15	52587729	52587730	-	0	NA	"intron (NM_018728, intron 1 of 40)"	CpG	-266	NM_018728	55930	Hs.487036	NM_018728	ENSG00000128833	MYO5C	-	myosin VC	protein-coding
chr10.59080736.-	chr10	59080736	59080737	-	0	NA	Intergenic	AluY|SINE|Alu	16417	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr8.67618008.-	chr8	67618008	67618009	-	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	6645	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr4.174256282.-	chr4	174256282	174256283	-	0	NA	promoter-TSS (NM_002129)	promoter-TSS (NM_002129)	687	NM_002129	3148	Hs.434953	NM_001130688		HMGB2	HMG2	high mobility group box 2	protein-coding
chr17.73615665.-	chr17	73615665	73615666	-	0	NA	"intron (NR_003587, intron 43 of 60)"	"intron (NR_003587, intron 43 of 60)"	13849	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr2.112813405.-	chr2	112813405	112813406	-	0	NA	"intron (NM_032824, intron 1 of 18)"	CpG	-605	NM_032824	84910	Hs.656298	NM_032824	ENSG00000153214	TMEM87B	-	transmembrane protein 87B	protein-coding
chr3.1144622.+	chr3	1144622	1144623	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9993	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr19.7697574.-	chr19	7697574	7697575	-	0	NA	"intron (NM_001271830, intron 2 of 3)"	"intron (NM_001271830, intron 2 of 3)"	-324	NM_001271830	126006	Hs.591400	NM_001271830	ENSG00000174788	PCP2	GPSM4	Purkinje cell protein 2	protein-coding
chr2.43254219.-	chr2	43254219	43254220	-	0	NA	Intergenic	Intergenic	-199526	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr2.136760790.-	chr2	136760790	136760791	-	0	NA	Intergenic	AluJb|SINE|Alu	17568	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr11.100596557.-	chr11	100596557	100596558	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38150	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr3.126170530.+	chr3	126170530	126170531	+	0	NA	"3' UTR (NM_001040653, exon 6 of 6)"	"3' UTR (NM_001040653, exon 6 of 6)"	24232	NM_001040653	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr17.73439482.-	chr17	73439482	73439483	-	0	NA	Intergenic	AluSg4|SINE|Alu	13182	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr11.83150058.+	chr11	83150058	83150059	+	0	NA	Intergenic	AluSx|SINE|Alu	-152681	NM_021825	60492	Hs.368866	NM_021825		CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
chr6.138984646.+	chr6	138984646	138984647	+	0	NA	Intergenic	AluSp|SINE|Alu	-28159	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	miscRNA
chr10.133021460.+	chr10	133021460	133021461	+	0	NA	"intron (NM_174937, intron 4 of 11)"	"intron (NM_174937, intron 4 of 11)"	88524	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr6.12012476.+	chr6	12012476	12012477	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-248	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr8.143373441.+	chr8	143373441	143373442	+	0	NA	"intron (NM_145003, intron 10 of 13)"	MLT1G1|LTR|ERVL-MaLR	93724	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	miscRNA
chr4.170679095.+	chr4	170679095	170679096	+	0	NA	promoter-TSS (NM_017867)	promoter-TSS (NM_017867)	-2	NM_017867	54969	Hs.406756	NM_017867	ENSG00000056050	C4orf27	-	chromosome 4 open reading frame 27	protein-coding
chr18.41408344.+	chr18	41408344	41408345	+	0	NA	Intergenic	AluSx3|SINE|Alu	-550729	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr18.68699013.-	chr18	68699013	68699014	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-547179	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	miscRNA
chr2.48776708.-	chr2	48776708	48776709	-	0	NA	"intron (NM_001198595, intron 2 of 4)"	AluSx1|SINE|Alu	-19400	NM_006873	11037	Hs.736128	NM_001198595	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
chr9.107407959.+	chr9	107407959	107407960	+	0	NA	Intergenic	AluSx|SINE|Alu	-27474	NM_001001956	286362	Hs.553682	NM_001001956	ENSG00000136839	OR13C9	OR37L|OR9-13	"olfactory receptor, family 13, subfamily C, member 9"	protein-coding
chr8.14459399.-	chr8	14459399	14459400	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	-251620	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr21.34914910.+	chr21	34914910	34914911	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	285	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr8.42722611.+	chr8	42722611	42722612	+	0	NA	"intron (NM_001160224, intron 4 of 5)"	AluSp|SINE|Alu	-24137	NM_199003	55145	Hs.7432	NM_018105	ENSG00000131931	THAP1	DYT6	"THAP domain containing, apoptosis associated protein 1"	protein-coding
chr1.52460245.+	chr1	52460245	52460246	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3809	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	"RAB3B, member RAS oncogene family"	protein-coding
chr18.31802638.-	chr18	31802638	31802639	-	0	NA	promoter-TSS (NM_001198547)	promoter-TSS (NM_001198547)	204	NR_036752	8715	Hs.514795	NM_001198546	ENSG00000101746	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
chr11.125673026.+	chr11	125673026	125673027	+	0	NA	Intergenic	L1M2|LINE|L1	15020	NM_001129883	100169851	Hs.131278	NM_001129883	ENSG00000236027	PATE3	HEL-127|PATE-DJ	prostate and testis expressed 3	protein-coding
chr3.183052367.-	chr3	183052367	183052368	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81335	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr12.107112635.+	chr12	107112635	107112636	+	0	NA	"intron (NM_213594, intron 11 of 17)"	AluY|SINE|Alu	-34157	NR_038912	100505978	Hs.662583	NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	miscRNA
chr3.50701718.-	chr3	50701718	50701719	-	0	NA	Intergenic	AluY|SINE|Alu	10793	NR_039950	100616138		NR_039950	ENSG00000266067	MIR4787	-	microRNA 4787	miscRNA
chr7.36403820.-	chr7	36403820	36403821	-	0	NA	"intron (NM_001100425, intron 2 of 6)"	AluJb|SINE|Alu	-2962	NM_001199707	23366	Hs.6224	NM_001100425	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding
chr16.70356421.-	chr16	70356421	70356422	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23359	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr16.71647923.+	chr16	71647923	71647924	+	0	NA	Intergenic	AluSz|SINE|Alu	-12133	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr14.93336007.+	chr14	93336007	93336008	+	0	NA	Intergenic	AluY|SINE|Alu	-53438	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
chr18.24692917.+	chr18	24692917	24692918	+	0	NA	"intron (NM_001256316, intron 2 of 4)"	AluY|SINE|Alu	72385	NM_001256316	83539	Hs.706552	NM_001256316	ENSG00000154080	CHST9	GALNAC4ST-2	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chr7.6647341.-	chr7	6647341	6647342	-	0	NA	"intron (NM_024067, intron 5 of 5)"	CpG	8186	NM_017560	54753	Hs.592170	NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
chr1.44474686.-	chr1	44474686	44474687	-	0	NA	"intron (NR_048549, intron 2 of 11)"	AluY|SINE|Alu	-8326	NM_201649	6536	Hs.442590	NM_001024845	ENSG00000196517	SLC6A9	GLYT1	"solute carrier family 6 (neurotransmitter transporter, glycine), member 9"	protein-coding
chr6.15331944.+	chr6	15331944	15331945	+	0	NA	"intron (NM_001267040, intron 1 of 17)"	AluSp|SINE|Alu	82858	NM_001267040	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr3.23563714.-	chr3	23563714	23563715	-	0	NA	"intron (NM_152653, intron 4 of 5)"	AluY|SINE|Alu	-188088	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	miscRNA
chr10.123791075.-	chr10	123791075	123791076	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42386	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr3.142319928.-	chr3	142319928	142319929	-	0	NA	"intron (NM_001145319, intron 1 of 15)"	AluY|SINE|Alu	-4699	NM_001145319	5357	Hs.203637	NM_001145319	ENSG00000120756	PLS1	-	plastin 1	protein-coding
chr12.118079869.-	chr12	118079869	118079870	-	0	NA	"intron (NM_173598, intron 5 of 19)"	L2c|LINE|L2	280262	NM_001204218	4842	Hs.735734	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
chr16.58258042.-	chr16	58258042	58258043	-	0	NA	Intergenic	AluSq2|SINE|Alu	25798	NM_001142302	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr1.54839925.-	chr1	54839925	54839926	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32054	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr3.31533153.+	chr3	31533153	31533154	+	0	NA	Intergenic	AluYa5|SINE|Alu	-41338	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr17.2904316.-	chr17	2904316	2904317	-	0	NA	"intron (NM_015085, intron 14 of 24)"	"intron (NM_015085, intron 14 of 24)"	-62585	NM_014566	8386	Hs.553508	NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31	"olfactory receptor, family 1, subfamily D, member 5"	protein-coding
chr1.10446805.+	chr1	10446805	10446806	+	0	NA	Intergenic	AluY|SINE|Alu	-12280	NM_002631	5226	Hs.464071	NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
chr14.105134527.-	chr14	105134527	105134528	-	0	NA	Intergenic	AluSz|SINE|Alu	-9559	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr6.57322556.-	chr6	57322556	57322557	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140134	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr11.69189622.+	chr11	69189622	69189623	+	0	NA	Intergenic	Intergenic	128000	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chrX.53111622.-	chrX	53111622	53111623	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-80	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr19.586958.+	chr19	586958	586959	+	0	NA	Intergenic	L2b|LINE|L2	-2935	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr12.12424887.+	chr12	12424887	12424888	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5076	NM_002336	4040	Hs.658913	NM_002336	ENSG00000070018	LRP6	ADCAD2	low density lipoprotein receptor-related protein 6	protein-coding
chr3.158905918.-	chr3	158905918	158905919	-	0	NA	"intron (NM_001197114, intron 1 of 9)"	AluSq2|SINE|Alu	85118	NM_001197108	29970	Hs.134665	NM_001197107	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
chr3.46709783.+	chr3	46709783	46709784	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9116	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr1.217394782.+	chr1	217394782	217394783	+	0	NA	Intergenic	AluSq2|SINE|Alu	-83685	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr7.5205943.+	chr7	5205943	5205944	+	0	NA	Intergenic	Intergenic	-21766	NR_034163	645700	Hs.690815	NR_034163	ENSG00000159904	ZNF890P	-	"zinc finger protein 890, pseudogene"	pseudo
chr11.507445.+	chr11	507445	507446	+	0	NA	promoter-TSS (NM_002939)	promoter-TSS (NM_002939)	-162	NM_203387	6050	Hs.530687	NM_002939	ENSG00000023191	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
chr1.113336832.+	chr1	113336832	113336833	+	0	NA	Intergenic	MER70B|LTR|ERVL	73643	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr16.1463902.+	chr16	1463902	1463903	+	0	NA	"exon (NM_001193388, exon 2 of 15)"	"exon (NM_001193388, exon 2 of 15)"	803	NM_001193388	64718	Hs.643536	NM_001037125	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unkempt homolog (Drosophila)-like	protein-coding
chrX.153523344.+	chrX	153523344	153523345	+	0	NA	promoter-TSS (NM_012253)	promoter-TSS (NM_012253)	110	NM_001586	1527	Hs.738440	NM_001205201	ENSG00000185254	TEX28	CXorf2|TEX28P1|TEX28P2|fTEX	testis expressed 28	protein-coding
chr11.66676668.+	chr11	66676668	66676669	+	0	NA	"intron (NM_000920, intron 2 of 21)"	"intron (NM_000920, intron 2 of 21)"	-1328	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
chr14.101679066.-	chr14	101679066	101679067	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142818	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr17.79962685.-	chr17	79962685	79962686	-	0	NA	"intron (NR_045351, intron 6 of 14)"	"intron (NR_045351, intron 6 of 14)"	-18100	NM_144998	201254	Hs.37616	NM_001271006	ENSG00000169689	STRA13	CENP-X|FAAP10|MHF2	stimulated by retinoic acid 13	protein-coding
chr2.88284268.-	chr2	88284268	88284269	-	0	NA	"intron (NM_001024457, intron 1 of 22)"	AluY|SINE|Alu	-1041	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
chr1.212973168.+	chr1	212973168	212973169	+	0	NA	"intron (NM_001146170, intron 4 of 8)"	AluSz6|SINE|Alu	7998	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
chr16.12163813.+	chr16	12163813	12163814	+	0	NA	"intron (NM_032167, intron 10 of 20)"	AluYc|SINE|Alu	93211	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr13.111467840.-	chr13	111467840	111467841	-	0	NA	Intergenic	Intergenic	-54815	NR_027701	283487	Hs.245390	NM_178514		LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	miscRNA
chr16.73625149.-	chr16	73625149	73625150	-	0	NA	Intergenic	AluSx3|SINE|Alu	-204445	NR_038234	100506172	Hs.637630	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	miscRNA
chr1.8021831.-	chr1	8021831	8021832	-	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	-117	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr20.37093385.-	chr20	37093385	37093386	-	0	NA	Intergenic	AluSx3|SINE|Alu	8101	NM_020336	57148	Hs.598850	NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta|dJ1100H13.1	"Ral GTPase activating protein, beta subunit (non-catalytic)"	protein-coding
chr10.104255184.-	chr10	104255184	104255185	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7328	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr15.22095197.+	chr15	22095197	22095198	+	0	NA	Intergenic	CpG	-12060	NM_207355	339010	Hs.742365	XM_003403539		POTEB	A26B1|CT104.5|POTE-15|POTE15	"POTE ankyrin domain family, member B"	protein-coding
chr10.111768145.+	chr10	111768145	111768146	+	0	NA	promoter-TSS (NR_038943)	promoter-TSS (NR_038943)	-6	NR_038943	100505933	Hs.604103	NR_038943		LOC100505933	-	uncharacterized LOC100505933	miscRNA
chr6.1610254.+	chr6	1610254	1610255	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-427	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr7.91516797.+	chr7	91516797	91516798	+	0	NA	Intergenic	SVA_A|Other|Other	-6781	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr10.32239023.-	chr10	32239023	32239024	-	0	NA	Intergenic	AluY|SINE|Alu	21219	NM_018287	94134	Hs.741991	NM_001270695	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
chr1.60870820.-	chr1	60870820	60870821	-	0	NA	Intergenic	AluYa5|SINE|Alu	331378	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	-	chromosome 1 open reading frame 87	protein-coding
chr17.1226111.-	chr17	1226111	1226112	-	0	NA	Intergenic	AluSx|SINE|Alu	-43154	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr5.1770123.+	chr5	1770123	1770124	+	0	NA	Intergenic	L1MB5|LINE|L1	29833	NM_032479	64979	Hs.719465	NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
chr15.89714213.-	chr15	89714213	89714214	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50709	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr19.4065769.-	chr19	4065769	4065770	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1047	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr4.5892157.-	chr4	5892157	5892158	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1842	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr1.178694917.+	chr1	178694917	178694918	+	0	NA	"intron (NM_152663, intron 1 of 19)"	CpG	617	NM_152663	55103	Hs.632485	NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
chr17.8061028.-	chr17	8061028	8061029	-	0	NA	Intergenic	AluY|SINE|Alu	-5265	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chr3.42642495.+	chr3	42642495	42642496	+	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	77	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr2.43253951.+	chr2	43253951	43253952	+	0	NA	Intergenic	Intergenic	199794	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr22.42828307.-	chr22	42828307	42828308	-	0	NA	promoter-TSS (NM_145912)	promoter-TSS (NM_145912)	-94	NM_145912	150372	Hs.436677	NM_145912	ENSG00000235568	NFAM1	CNAIP|bK126B4.4	NFAT activating protein with ITAM motif 1	protein-coding
chr8.30590350.-	chr8	30590350	30590351	-	0	NA	Intergenic	HERVE-int|LTR|ERV1	4864	NM_001195103	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	-	glutathione reductase	protein-coding
chr1.247910823.-	chr1	247910823	247910824	-	0	NA	Intergenic	AluY|SINE|Alu	-10885	NM_012353	26188	Hs.381306	NM_012353		OR1C1	HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27	"olfactory receptor, family 1, subfamily C, member 1"	protein-coding
chr4.103422413.-	chr4	103422413	103422414	-	0	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	73	NM_003998	4790	Hs.618430	NM_001165412	ENSG00000109320	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
chr2.240402076.-	chr2	240402076	240402077	-	0	NA	Intergenic	Intergenic	79433	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr10.127461673.-	chr10	127461673	127461674	-	0	NA	"intron (NM_147191, intron 2 of 6)"	"intron (NM_147191, intron 2 of 6)"	-2717	NM_147191	118856	Hs.314141	NM_147191	ENSG00000154485	MMP21	-	matrix metallopeptidase 21	protein-coding
chr3.13876364.+	chr3	13876364	13876365	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45254	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr16.27234290.+	chr16	27234290	27234291	+	0	NA	Intergenic	Intergenic	18994	NM_001145348	79831	Hs.145717	NM_001145348	ENSG00000155666	KDM8	JMJD5	lysine (K)-specific demethylase 8	protein-coding
chr1.59041990.-	chr1	59041990	59041991	-	0	NA	"exon (NM_002353, exon 1 of 1)"	"exon (NM_002353, exon 1 of 1)"	-1176	NM_002353	4070	Hs.23582	NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
chr22.24777721.-	chr22	24777721	24777722	-	0	NA	"intron (NM_001254732, intron 13 of 14)"	AluY|SINE|Alu	-39645	NM_001254733	23384	Hs.474384	NM_001145468	ENSG00000100014	SPECC1L	CYTSA|OBLFC1	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding
chr7.91516772.+	chr7	91516772	91516773	+	0	NA	Intergenic	SVA_A|Other|Other	-6756	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chr2.19132841.-	chr2	19132841	19132842	-	0	NA	Intergenic	AluYk4|SINE|Alu	361995	NM_001199088	93034	Hs.744358	NM_001002006	ENSG00000185013	NT5C1B	AIRP|CN-IB|CN1B	"5'-nucleotidase, cytosolic IB"	protein-coding
chr12.31575289.+	chr12	31575289	31575290	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96130	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr2.33708709.+	chr2	33708709	33708710	+	0	NA	"intron (NM_001139488, intron 1 of 17)"	AluSx1|SINE|Alu	7388	NM_001139488	25780	Hs.143674	NM_001139488	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
chr1.181058697.-	chr1	181058697	181058698	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1059	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr16.1383579.+	chr16	1383579	1383580	+	0	NA	promoter-TSS (NM_001199099)	promoter-TSS (NM_001199099)	-27	NM_001199097	8938	Hs.458427	NM_001199096	ENSG00000007516	BAIAP3	BAP3	BAI1-associated protein 3	protein-coding
chr22.20137577.+	chr22	20137577	20137578	+	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	-146	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr12.112407413.+	chr12	112407413	112407414	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43610	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr7.61969460.+	chr7	61969460	61969461	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	794974	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr17.8061010.-	chr17	8061010	8061011	-	0	NA	Intergenic	AluY|SINE|Alu	5257	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr9.6559783.-	chr9	6559783	6559784	-	0	NA	"intron (NM_000170, intron 16 of 24)"	AluSx4|SINE|Alu	-85909	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
chr2.237068294.-	chr2	237068294	237068295	-	0	NA	Intergenic	CpG	-8358	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr5.196692.+	chr5	196692	196693	+	0	NA	Intergenic	Intergenic	5066	NM_001080478	389257	Hs.683662	NM_001080478		LRRC14B	-	leucine rich repeat containing 14B	protein-coding
chr14.105618920.-	chr14	105618920	105618921	-	0	NA	"intron (NM_145159, intron 5 of 24)"	"intron (NM_145159, intron 5 of 24)"	-16241	NM_145159	3714	Hs.433445	NM_002226	ENSG00000184916	JAG2	HJ2|SER2	jagged 2	protein-coding
chr12.26964556.-	chr12	26964556	26964557	-	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	-21575	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr7.63865000.-	chr7	63865000	63865001	-	0	NA	Intergenic	AluY|SINE|Alu	29071	NR_029404	649395	Hs.728871	NR_029404		LOC649395	-	"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene"	pseudo
chr6.158700227.+	chr6	158700227	158700228	+	0	NA	Intergenic	AluY|SINE|Alu	-33465	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr1.242852794.-	chr1	242852794	242852795	-	0	NA	Intergenic	LTR12C|LTR|ERV1	164796	NM_152666	200150	Hs.672452	NM_001195811	ENSG00000180287	PLD5	PLDC	"phospholipase D family, member 5"	protein-coding
chr2.86777047.+	chr2	86777047	86777048	+	0	NA	"intron (NM_001198954, intron 3 of 7)"	SVA_A|Other|Other	13573	NM_001005753	51652	Hs.591582	NM_001005753	ENSG00000115561	CHMP3	NEDF|VPS24	charged multivesicular body protein 3	protein-coding
chr11.5315850.+	chr11	5315850	5315851	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7326	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr2.207036819.+	chr2	207036819	207036820	+	0	NA	Intergenic	SVA_D|Other|Other	9867	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr11.44361784.-	chr11	44361784	44361785	-	0	NA	Intergenic	AluJb|SINE|Alu	30068	NM_021926	60529	Hs.436055	NM_021926	ENSG00000052850	ALX4	FND2	ALX homeobox 4	protein-coding
chr11.47207247.-	chr11	47207247	47207248	-	0	NA	"5' UTR (NM_001184975, exon 1 of 11)"	"5' UTR (NM_001184975, exon 1 of 11)"	-185	NM_001184975	29763	Hs.334639	NM_001184974	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
chr1.110881129.+	chr1	110881129	110881130	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	664	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr12.54698996.-	chr12	54698996	54698997	-	0	NA	Intergenic	AluSx1|SINE|Alu	4175	NM_001261461	4778	Hs.75643	NM_001136023	ENSG00000123405	NFE2	NF-E2|p45	"nuclear factor (erythroid-derived 2), 45kDa"	protein-coding
chr5.18111602.-	chr5	18111602	18111603	-	0	NA	Intergenic	AluY|SINE|Alu	724183	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chrX.128920971.+	chrX	128920971	128920972	+	0	NA	"intron (NM_018990, intron 1 of 7)"	AluY|SINE|Alu	7079	NM_018990	54440	Hs.61469	NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
chr10.30848028.+	chr10	30848028	30848029	+	0	NA	Intergenic	AluSp|SINE|Alu	70619	NM_183058	119180	Hs.522610	NM_183058	ENSG00000151033	LYZL2	-	lysozyme-like 2	protein-coding
chr3.9429723.+	chr3	9429723	9429724	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	9451	NR_027007	440944	Hs.730098	NM_001013713		SETD5-AS1	THUMPD3-AS1	SETD5 antisense RNA 1	miscRNA
chr7.821265.+	chr7	821265	821266	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33929	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr12.27397300.+	chr12	27397300	27397301	+	0	NA	"intron (NM_015000, intron 1 of 13)"	CpG	222	NM_015000	23012	Hs.184523	NM_015000	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
chr6.466867.-	chr6	466867	466868	-	0	NA	Intergenic	Intergenic	-75128	NM_002460	3662	Hs.401013	NM_001195286	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
chr12.132313229.-	chr12	132313229	132313230	-	0	NA	"intron (NM_016155, intron 1 of 9)"	CpG	-288	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr5.21341910.+	chr5	21341910	21341911	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-117679	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	"glucuronidase, beta pseudogene 1"	pseudo
chr8.58122872.+	chr8	58122872	58122873	+	0	NA	Intergenic	MER50|LTR|ERV1	-8776	NR_038235	100507651	Hs.631151	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	miscRNA
chr8.56758278.+	chr8	56758278	56758279	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34108	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr15.59225443.-	chr15	59225443	59225444	-	0	NA	"intron (NM_001013843, intron 1 of 20)"	CpG	-409	NM_024755	79811	Hs.512932	NM_017968	ENSG00000137776	SLTM	Met	"SAFB-like, transcription modulator"	protein-coding
chr2.203027117.+	chr2	203027117	203027118	+	0	NA	"intron (NM_001277372, intron 14 of 21)"	AluSx|SINE|Alu	76205	NM_001005782	7341	Hs.81424	NM_001005781	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	protein-coding
chr2.213546670.-	chr2	213546670	213546671	-	0	NA	Intergenic	AluSc8|SINE|Alu	143318	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr22.43718274.+	chr22	43718274	43718275	+	0	NA	"intron (NM_173050, intron 2 of 21)"	AluSc8|SINE|Alu	21120	NM_173050	80274	Hs.133995	NM_173050	ENSG00000159307	SCUBE1	-	"signal peptide, CUB domain, EGF-like 1"	protein-coding
chr12.32064871.+	chr12	32064871	32064872	+	0	NA	Intergenic	AluY|SINE|Alu	-47482	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr12.132353182.+	chr12	132353182	132353183	+	0	NA	Intergenic	Intergenic	-26097	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr18.63211140.-	chr18	63211140	63211141	-	0	NA	Intergenic	AluY|SINE|Alu	206348	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr7.4516785.+	chr7	4516785	4516786	+	0	NA	Intergenic	AluSx1|SINE|Alu	-205145	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr4.55034917.+	chr4	55034917	55034918	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60347	NM_006206	5156	Hs.74615	NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	"platelet-derived growth factor receptor, alpha polypeptide"	protein-coding
chr11.111411728.+	chr11	111411728	111411729	+	0	NA	"intron (NM_001258391, intron 1 of 5)"	CpG	495	NM_178834	143903	Hs.503831	NM_001258390	ENSG00000204381	LAYN	-	layilin	protein-coding
chr2.43253933.+	chr2	43253933	43253934	+	0	NA	Intergenic	Intergenic	199812	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr2.191771946.+	chr2	191771946	191771947	+	0	NA	"intron (NM_001256310, intron 6 of 14)"	AluY|SINE|Alu	26399	NM_014905	2744	Hs.737608	NM_001256310	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
chr11.4039404.+	chr11	4039404	4039405	+	0	NA	"intron (NM_003156, intron 2 of 11)"	AluYb8|SINE|Alu	-76520	NM_001033	6240	Hs.445705	NM_001033	ENSG00000167325	RRM1	R1|RIR1|RR1	ribonucleotide reductase M1	protein-coding
chr5.170687164.+	chr5	170687164	170687165	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49124	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr1.226530060.+	chr1	226530060	226530061	+	0	NA	Intergenic	AluY|SINE|Alu	-32611	NM_001270410	286826	Hs.120817	NM_001270409	ENSG00000183814	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 homolog (C. elegans)	protein-coding
chr4.184754933.+	chr4	184754933	184754934	+	0	NA	Intergenic	AluYa5|SINE|Alu	-71576	NM_020225	56977	Hs.696657	NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
chr9.95526681.-	chr9	95526681	95526682	-	0	NA	"intron (NM_015250, intron 1 of 7)"	CpG	-402	NM_015250	23299	Hs.436939	NM_001003800	ENSG00000185963	BICD2	bA526D8.1	bicaudal D homolog 2 (Drosophila)	protein-coding
chr10.65193057.-	chr10	65193057	65193058	-	0	NA	"intron (NM_032776, intron 1 of 25)"	AluSp|SINE|Alu	31932	NR_027182	84989	Hs.659950	NM_032903		JMJD1C-AS1	-	JMJD1C antisense RNA 1	miscRNA
chr4.26862508.+	chr4	26862508	26862509	+	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	195	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chrX.53930580.-	chrX	53930580	53930581	-	0	NA	Intergenic	AluSq2|SINE|Alu	-139047	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr12.79439119.-	chr12	79439119	79439120	-	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	314	NM_001135806	6857	Hs.310545	NM_001135805	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
chr12.120874312.+	chr12	120874312	120874313	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1581	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr6.85476321.-	chr6	85476321	85476322	-	0	NA	Intergenic	Intergenic	2367	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
chr3.23563715.-	chr3	23563715	23563716	-	0	NA	"intron (NM_152653, intron 4 of 5)"	AluY|SINE|Alu	-188089	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	miscRNA
chr4.78828909.-	chr4	78828909	78828910	-	0	NA	"intron (NM_020236, intron 6 of 8)"	AluSz|SINE|Alu	-45104	NM_020236	65008	Hs.532019	NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1	mitochondrial ribosomal protein L1	protein-coding
chr10.119806497.+	chr10	119806497	119806498	+	0	NA	promoter-TSS (NM_014904)	promoter-TSS (NM_014904)	165	NR_026939	255082	Hs.89387	NM_178816	ENSG00000177640	CASC2	C10orf5	cancer susceptibility candidate 2 (non-protein coding)	miscRNA
chr1.43081261.+	chr1	43081261	43081262	+	0	NA	"intron (NM_001080850, intron 10 of 15)"	AluSz|SINE|Alu	-42787	NM_006347	10465	Hs.256639	NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H (cyclophilin H)	protein-coding
chr2.61595301.+	chr2	61595301	61595302	+	0	NA	"intron (NM_014709, intron 10 of 79)"	AluSc|SINE|Alu	49211	NR_003707	100124537	Hs.675825	NR_003707		SNORA70B	-	"small nucleolar RNA, H/ACA box 70B"	snoRNA
chr6.108315258.+	chr6	108315258	108315259	+	0	NA	Intergenic	AluSz|SINE|Alu	-35776	NM_007214	11231	Hs.26904	NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
chr19.15543563.-	chr19	15543563	15543564	-	0	NA	"intron (NM_021241, intron 3 of 7)"	CpG	13730	NM_014371	26993	Hs.399800	NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A kinase (PRKA) anchor protein 8-like	protein-coding
chrX.81762764.-	chrX	81762764	81762765	-	0	NA	Intergenic	AluY|SINE|Alu	1000505	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr7.53103931.+	chr7	53103931	53103932	+	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	582	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr6.70692604.-	chr6	70692604	70692605	-	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	-116156	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr20.61604907.-	chr20	61604907	61604908	-	0	NA	Intergenic	Intergenic	-20908	NM_022082	63910	Hs.512686	NM_022082	ENSG00000101194	SLC17A9	C20orf59	"solute carrier family 17, member 9"	protein-coding
chr21.47838751.-	chr21	47838751	47838752	-	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	40111	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr19.48814087.-	chr19	48814087	48814088	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9245	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr15.91599273.+	chr15	91599273	91599274	+	0	NA	Intergenic	Intergenic	-33440	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr6.1610229.+	chr6	1610229	1610230	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-452	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr7.1286207.-	chr7	1286207	1286208	-	0	NA	Intergenic	CpG	-13553	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr7.1798947.-	chr7	1798947	1798948	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50149	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr1.27595475.-	chr1	27595475	27595476	-	0	NA	"intron (NM_015023, intron 3 of 15)"	AluSx|SINE|Alu	-34468	NM_001276252	23038	Hs.469154	NM_001276252	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
chrX.141491628.+	chrX	141491628	141491629	+	0	NA	Intergenic	AluY|SINE|Alu	-198552	NM_016249	51438	Hs.123536	NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	"melanoma antigen family C, 2"	protein-coding
chr2.38595132.-	chr2	38595132	38595133	-	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	-9300	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chrM.6481.+	chrM	6481	6482	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.18755209.+	chr17	18755209	18755210	+	0	NA	Intergenic	AluSx|SINE|Alu	-4403	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr5.178157718.+	chr5	178157718	178157719	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-15	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr2.44294798.+	chr2	44294798	44294799	+	0	NA	Intergenic	SVA_D|Other|Other	-71654	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
chr16.58782875.-	chr16	58782875	58782876	-	0	NA	Intergenic	LTR12C|LTR|ERV1	14629	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|mitAAT	"glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)"	protein-coding
chr6.126111988.+	chr6	126111988	126111989	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	79	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr19.11104341.-	chr19	11104341	11104342	-	0	NA	"intron (NM_001128845, intron 7 of 32)"	AluY|SINE|Alu	-9513	NM_001128845	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr7.821260.+	chr7	821260	821261	+	0	NA	"intron (NR_075098, intron 12 of 12)"	L1MA3|LINE|L1	-33934	NM_001171946	23353	Hs.438072	NM_001130965	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
chr7.36845301.-	chr7	36845301	36845302	-	0	NA	Intergenic	AluJb|SINE|Alu	81147	NM_001637	313	Hs.488007	NM_001177506	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
chr19.15037603.+	chr19	15037603	15037604	+	0	NA	Intergenic	AluSp|SINE|Alu	-14698	NM_012377	26658	Hs.589620	NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	"olfactory receptor, family 7, subfamily C, member 2"	protein-coding
chr11.113666042.-	chr11	113666042	113666043	-	0	NA	Intergenic	AluSx|SINE|Alu	-15524	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr17.810089.-	chr17	810089	810090	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42738	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr13.61597497.-	chr13	61597497	61597498	-	0	NA	Intergenic	AluYc3|SINE|Alu	-176517	NR_036128	100422973		NR_036128	ENSG00000266663	MIR3169	-	microRNA 3169	miscRNA
chr8.128328696.+	chr8	128328696	128328697	+	0	NA	Intergenic	Intergenic	-99161	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr10.23002993.+	chr10	23002993	23002994	+	0	NA	"intron (NM_005028, intron 1 of 9)"	CpG	510	NM_005028	5305	Hs.57079	NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	"phosphatidylinositol-5-phosphate 4-kinase, type II, alpha"	protein-coding
chr19.2340051.-	chr19	2340051	2340052	-	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	-11422	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr6.8388440.-	chr6	8388440	8388441	-	0	NA	Intergenic	LTR9|LTR|ERV1	-47354	NM_001142541	51000	Hs.285847	NM_001142540	ENSG00000124786	SLC35B3	C6orf196|PAPST2	"solute carrier family 35, member B3"	protein-coding
chr2.47661277.+	chr2	47661277	47661278	+	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	31071	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr19.58919168.-	chr19	58919168	58919169	-	0	NA	promoter-TSS (NM_173548)	promoter-TSS (NM_173548)	895	NM_173548	201514	Hs.439551	NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
chr14.106358718.+	chr14	106358718	106358719	+	0	NA	Intergenic	Intergenic	-25120	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr2.71562049.+	chr2	71562049	71562050	+	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	3164	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr1.236252187.+	chr1	236252187	236252188	+	0	NA	Intergenic	AluY|SINE|Alu	-23706	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr8.142397025.-	chr8	142397025	142397026	-	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	19660	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chrX.148586800.+	chrX	148586800	148586801	+	0	NA	promoter-TSS (NM_000202)	promoter-TSS (NM_000202)	84	NM_000202	3423	Hs.460960	NM_000202	ENSG00000010404	IDS	MPS2|SIDS	iduronate 2-sulfatase	protein-coding
chr4.141334751.+	chr4	141334751	141334752	+	0	NA	"intron (NM_004362, intron 1 of 14)"	L1PA2|LINE|L1	14064	NM_001130675	1047	Hs.86368	NM_001130675	ENSG00000153132	CLGN	-	calmegin	protein-coding
chr1.22612032.+	chr1	22612032	22612033	+	0	NA	Intergenic	MIR3|SINE|MIR	-142513	NM_030761	54361	Hs.25766	NM_030761		WNT4	SERKAL|WNT-4	"wingless-type MMTV integration site family, member 4"	protein-coding
chr5.52316779.+	chr5	52316779	52316780	+	0	NA	"intron (NR_073107, intron 1 of 28)"	AluSx|SINE|Alu	31623	NR_073106	3673	Hs.482077	NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	"integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)"	protein-coding
chr7.75947855.+	chr7	75947855	75947856	+	0	NA	Intergenic	CpG	15980	NM_001540	3315	Hs.520973	NM_001540	ENSG00000106211	HSPB1	CMT2F|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock 27kDa protein 1	protein-coding
chrX.69654767.+	chrX	69654767	69654768	+	0	NA	Intergenic	Intergenic	-9938	NM_021120	1741	Hs.721586	NM_001166278	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|SAP102|XLMR	"discs, large homolog 3 (Drosophila)"	protein-coding
chr4.57633157.-	chr4	57633157	57633158	-	0	NA	Intergenic	AluSc8|SINE|Alu	-54482	NR_073417	6691	Hs.98243	NM_001271718	ENSG00000128040	SPINK2	HUSI-II	"serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)"	protein-coding
chr8.22632949.+	chr8	22632949	22632950	+	0	NA	"intron (NM_144962, intron 4 of 6)"	"intron (NM_144962, intron 4 of 6)"	-82134	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr12.32064859.+	chr12	32064859	32064860	+	0	NA	Intergenic	AluY|SINE|Alu	-47494	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr1.5005202.+	chr1	5005202	5005203	+	0	NA	Intergenic	Intergenic	290097	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr9.99114725.+	chr9	99114725	99114726	+	0	NA	"intron (NM_007001, intron 4 of 11)"	AluSx|SINE|Alu	31267	NM_007001	11046	Hs.731624	NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	"solute carrier family 35, member D2"	protein-coding
chr11.280207.-	chr11	280207	280208	-	0	NA	"exon (NM_001276700, exon 4 of 8)"	"exon (NM_001276700, exon 4 of 8)"	-1637	NM_138329	171389	Hs.352611	NM_001276700	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	"NLR family, pyrin domain containing 6"	protein-coding
chr14.94394854.+	chr14	94394854	94394855	+	0	NA	"exon (NM_138344, exon 3 of 3)"	"exon (NM_138344, exon 3 of 3)"	1123	NM_001207072	90050	Hs.525550	NM_001207071	ENSG00000140067	FAM181A	C14orf152	"family with sequence similarity 181, member A"	protein-coding
chr8.98766130.-	chr8	98766130	98766131	-	0	NA	Intergenic	AluSz|SINE|Alu	21679	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr7.130728481.+	chr7	130728481	130728482	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63308	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr1.8837741.+	chr1	8837741	8837742	+	0	NA	"intron (NM_001042681, intron 1 of 22)"	AluY|SINE|Alu	39958	NM_012102	473	Hs.463041	NM_001042681	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
chr4.185174253.+	chr4	185174253	185174254	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35139	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr15.20478957.-	chr15	20478957	20478958	-	0	NA	Intergenic	AluY|SINE|Alu	9040	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr2.121543037.+	chr2	121543037	121543038	+	0	NA	Intergenic	Intergenic	-11830	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	HPE9|THP1|THP2	GLI family zinc finger 2	protein-coding
chr19.14551304.-	chr19	14551304	14551305	-	0	NA	"intron (NM_213560, intron 1 of 21)"	"intron (NM_213560, intron 1 of 21)"	-218	NM_213560	5585	Hs.466044	NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
chr12.112407426.-	chr12	112407426	112407427	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43597	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr12.7146120.+	chr12	7146120	7146121	+	0	NA	Intergenic	Intergenic	-20278	NM_005768	10162	Hs.655248	NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
chr22.19172041.+	chr22	19172041	19172042	+	0	NA	"intron (NM_001835, intron 28 of 31)"	"intron (NM_001835, intron 28 of 31)"	-5703	NR_046298	6576	Hs.111024	NM_001256534	ENSG00000100075	SLC25A1	CTP|SEA|SLC20A3	"solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1"	protein-coding
chr4.185655171.+	chr4	185655171	185655172	+	0	NA	"exon (NM_024629, exon 1 of 13)"	"exon (NM_024629, exon 1 of 13)"	115	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr4.54204871.+	chr4	54204871	54204872	+	0	NA	"intron (NM_152540, intron 2 of 8)"	AluYa5|SINE|Alu	27371	NM_152540	152579	Hs.302287	NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
chr8.141523808.-	chr8	141523808	141523809	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1727	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr9.11599712.-	chr9	11599712	11599713	-	0	NA	Intergenic	AluY|SINE|Alu	986989	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr10.123791063.-	chr10	123791063	123791064	-	0	NA	"intron (NM_206862, intron 2 of 22)"	AluY|SINE|Alu	-42374	NM_206861	10579	Hs.713875	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	"transforming, acidic coiled-coil containing protein 2"	protein-coding
chr1.110881126.-	chr1	110881126	110881127	-	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	-667	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr17.37768988.+	chr17	37768988	37768989	+	0	NA	Intergenic	Intergenic	-4813	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
chr17.79609400.+	chr17	79609400	79609401	+	0	NA	promoter-TSS (NM_031945)	promoter-TSS (NM_031945)	51	NM_031945	83882	Hs.740811	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
chr1.151742039.-	chr1	151742039	151742040	-	0	NA	"intron (NM_016178, intron 3 of 4)"	SVA_C|Other|Other	-2908	NM_016178	51686	Hs.713789	NM_001134939	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
chr9.127099240.+	chr9	127099240	127099241	+	0	NA	"intron (NM_001166170, intron 7 of 9)"	AluSx|SINE|Alu	-16512	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	miscRNA
chr9.21968320.+	chr9	21968320	21968321	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1182	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr21.34099788.-	chr21	34099788	34099789	-	0	NA	promoter-TSS (NR_038880)	promoter-TSS (NR_038880)	-462	NM_001160302	8867	Hs.473632	NM_001160302	ENSG00000159082	SYNJ1	INPP5G	synaptojanin 1	protein-coding
chr16.84670316.+	chr16	84670316	84670317	+	0	NA	Intergenic	AluY|SINE|Alu	-11815	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr10.5600310.-	chr10	5600310	5600311	-	0	NA	Intergenic	Intergenic	-33386	NM_005185	810	Hs.239600	NM_005185	ENSG00000178363	CALML3	CLP	calmodulin-like 3	protein-coding
chr12.31575305.+	chr12	31575305	31575306	+	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	-96146	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr11.915945.+	chr11	915945	915946	+	0	NA	promoter-TSS (NM_001142675)	promoter-TSS (NM_001142675)	-887	NM_001142675	66005	Hs.144468	NM_001142674	ENSG00000177830	CHID1	SI-CLP	chitinase domain containing 1	protein-coding
chr2.183551446.-	chr2	183551446	183551447	-	0	NA	Intergenic	L1PA5|LINE|L1	29322	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr4.166248595.+	chr4	166248595	166248596	+	0	NA	promoter-TSS (NM_006745)	promoter-TSS (NM_006745)	-223	NM_001017369	6307	Hs.593050	NM_001017369	ENSG00000052802	MSMO1	DESP4|ERG25|SC4MOL	methylsterol monooxygenase 1	protein-coding
chr1.183670815.+	chr1	183670815	183670816	+	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	-48367	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr2.202898617.-	chr2	202898617	202898618	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	693	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr14.105736164.+	chr14	105736164	105736165	+	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	-20423	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr12.4206060.+	chr12	4206060	4206061	+	0	NA	Intergenic	AluSc8|SINE|Alu	-176842	NM_001759	894	Hs.376071	NM_001759	ENSG00000118971	CCND2	KIAK0002	cyclin D2	protein-coding
chr19.48814082.-	chr19	48814082	48814083	-	0	NA	"intron (NM_144577, intron 5 of 13)"	AluSx|SINE|Alu	-9250	NM_144577	93233	Hs.112645	NM_001135193	ENSG00000105479	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
chr11.41260602.-	chr11	41260602	41260603	-	0	NA	"intron (NM_001258419, intron 1 of 6)"	AluY|SINE|Alu	-220584	NM_001258419	57689	Hs.135736	NM_001258419	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
chr18.2377787.-	chr18	2377787	2377788	-	0	NA	Intergenic	AluSg7|SINE|Alu	-193702	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr19.35418159.+	chr19	35418159	35418160	+	0	NA	"5' UTR (NM_001099438, exon 1 of 5)"	"5' UTR (NM_001099438, exon 1 of 5)"	352	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr12.131419250.+	chr12	131419250	131419251	+	0	NA	Intergenic	AluSz|SINE|Alu	-19202	NM_198827	283383	Hs.719239	NM_198827	ENSG00000111452	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
chr20.1317944.-	chr20	1317944	1317945	-	0	NA	"intron (NR_040047, intron 1 of 2)"	MIR|SINE|MIR	8065	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr9.138663322.-	chr9	138663322	138663323	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69291	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr2.39267435.+	chr2	39267435	39267436	+	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	-79950	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr10.67804006.+	chr10	67804006	67804007	+	0	NA	"intron (NM_013266, intron 15 of 17)"	AluSx|SINE|Alu	-881786	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
chr22.50987288.-	chr22	50987288	50987289	-	0	NA	"exon (NM_138433, exon 1 of 1)"	"exon (NM_138433, exon 1 of 1)"	-826	NM_138433	113730	Hs.137007	NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
chr9.16855811.-	chr9	16855811	16855812	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-14975	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr13.50177047.-	chr13	50177047	50177048	-	0	NA	Intergenic	AluY|SINE|Alu	17328	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr8.111696873.-	chr8	111696873	111696874	-	0	NA	Intergenic	AluY|SINE|Alu	709914	NM_014379	27012	Hs.13285	NM_014379	ENSG00000164794	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	"potassium channel, subfamily V, member 1"	protein-coding
chr1.240947787.-	chr1	240947787	240947788	-	0	NA	"intron (NM_002924, intron 17 of 17)"	AluY|SINE|Alu	172325	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr15.31775621.-	chr15	31775621	31775622	-	0	NA	"exon (NM_130901, exon 11 of 11)"	"exon (NM_130901, exon 11 of 11)"	-156538	NM_015995	51621	Hs.525752	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
chr16.48660628.+	chr16	48660628	48660629	+	0	NA	Intergenic	AluSc5|SINE|Alu	-16508	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
chr3.166579317.+	chr3	166579317	166579318	+	0	NA	Intergenic	AluY|SINE|Alu	518754	NM_001199202	79740	Hs.478143	NM_001199201	ENSG00000169064	ZBBX	-	"zinc finger, B-box domain containing"	protein-coding
chr2.121086025.-	chr2	121086025	121086026	-	0	NA	Intergenic	Intergenic	17694	NM_002193	3625	Hs.1735	NM_002193	ENSG00000163083	INHBB	-	"inhibin, beta B"	protein-coding
chr16.88387046.+	chr16	88387046	88387047	+	0	NA	Intergenic	L2b|LINE|L2	-106833	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr2.234762633.+	chr2	234762633	234762634	+	0	NA	"intron (NM_018410, intron 1 of 8)"	CpG	579	NM_018410	55355	Hs.532968	NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
chr11.9503856.+	chr11	9503856	9503857	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21344	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr2.20739880.-	chr2	20739880	20739881	-	0	NA	Intergenic	Intergenic	-93045	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
chr3.186441585.-	chr3	186441585	186441586	-	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	-6487	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr11.57484707.-	chr11	57484707	57484708	-	0	NA	"intron (NR_037645, intron 1 of 5)"	SVA_D|Other|Other	-4712	NR_037646	100528016	Hs.166011	NR_037646	ENSG00000254462	TMX2-CTNND1	-	TMX2-CTNND1 readthrough (non-protein coding)	miscRNA
chr13.20328859.-	chr13	20328859	20328860	-	0	NA	"intron (NR_044998, intron 3 of 7)"	AluSx|SINE|Alu	-28300	NR_003272	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
chr10.120946128.-	chr10	120946128	120946129	-	0	NA	Intergenic	AluY|SINE|Alu	7783	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr20.13271218.-	chr20	13271218	13271219	-	0	NA	"intron (NM_080826, intron 4 of 5)"	AluY|SINE|Alu	50884	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	miscRNA
chr11.19881561.-	chr11	19881561	19881562	-	0	NA	"intron (NM_001244963, intron 3 of 39)"	SVA_D|Other|Other	99932	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	miscRNA
chr5.179167553.+	chr5	179167553	179167554	+	0	NA	"intron (NM_014757, intron 1 of 4)"	AluY|SINE|Alu	7702	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
chr22.37641423.+	chr22	37641423	37641424	+	0	NA	Intergenic	Intergenic	-1118	NM_002872	5880	Hs.517601	NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022	"ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)"	protein-coding
chr2.157198626.+	chr2	157198626	157198627	+	0	NA	Intergenic	CpG	-9339	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	"nuclear receptor subfamily 4, group A, member 2"	protein-coding
chr9.140206023.-	chr9	140206023	140206024	-	0	NA	"intron (NM_017820, intron 19 of 21)"	"intron (NM_017820, intron 19 of 21)"	9320	NM_001004354	441478	Hs.732282	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
chr3.42630521.-	chr3	42630521	42630522	-	0	NA	"intron (NM_001201572, intron 1 of 6)"	AluSx3|SINE|Alu	1777	NM_016305	51188	Hs.534454	NM_016305	ENSG00000008324	SS18L2	KIAA-iso	synovial sarcoma translocation gene on chromosome 18-like 2	protein-coding
chr11.18475398.-	chr11	18475398	18475399	-	0	NA	Intergenic	AluSx|SINE|Alu	1976	NM_001144071	160287	Hs.668877	NM_001144071	ENSG00000166800	LDHAL6A	LDH6A	lactate dehydrogenase A-like 6A	protein-coding
chr1.167723159.+	chr1	167723159	167723160	+	0	NA	"intron (NM_003953, intron 1 of 5)"	AluSx1|SINE|Alu	31972	NM_001146191	9019	Hs.493919	NM_001146191	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
chr8.41166073.-	chr8	41166073	41166074	-	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	-917	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr4.37548432.-	chr4	37548432	37548433	-	0	NA	"intron (NM_001104629, intron 1 of 3)"	HERVE_a-int|LTR|ERV1	37423	NM_018302	55286	Hs.107527	NM_001104629		C4orf19	-	chromosome 4 open reading frame 19	protein-coding
chr22.30781358.-	chr22	30781358	30781359	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	-1944	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr11.64120692.+	chr11	64120692	64120693	+	0	NA	"exon (NM_032251, exon 21 of 27)"	"exon (NM_032251, exon 21 of 27)"	-5933	NM_001006944	8986	Hs.105584	NM_001006944	ENSG00000162302	RPS6KA4	MSK2|RSK-B	"ribosomal protein S6 kinase, 90kDa, polypeptide 4"	protein-coding
chr4.140222896.+	chr4	140222896	140222897	+	0	NA	promoter-TSS (NM_002494)	promoter-TSS (NM_002494)	220	NM_057175	80155	Hs.555985	NM_057175	ENSG00000164134	NAA15	Ga19|NARG1|NATH|TBDN100	"N(alpha)-acetyltransferase 15, NatA auxiliary subunit"	protein-coding
chr10.8150599.-	chr10	8150599	8150600	-	0	NA	Intergenic	AluY|SINE|Alu	-53932	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr19.4400394.+	chr19	4400394	4400395	+	0	NA	promoter-TSS (NM_001199944)	promoter-TSS (NM_001199944)	21	NM_001199944	6455	Hs.97616	NM_001199943	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3-domain GRB2-like 1	protein-coding
chr3.4664387.+	chr3	4664387	4664388	+	0	NA	"intron (NM_002222, intron 4 of 57)"	AluSc|SINE|Alu	128887	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	miscRNA
chr17.38498760.-	chr17	38498760	38498761	-	0	NA	"5' UTR (NM_001024809, exon 1 of 8)"	"5' UTR (NM_001024809, exon 1 of 8)"	-489	NM_001024809	5914	Hs.654583	NM_000964		RARA	NR1B1|RAR	"retinoic acid receptor, alpha"	protein-coding
chr3.20070752.-	chr3	20070752	20070753	-	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	10772	NM_003884	8850	Hs.533055	NM_003884	ENSG00000114166	KAT2B	CAF|P|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
chr1.22202357.-	chr1	22202357	22202358	-	0	NA	"exon (NM_005529, exon 24 of 97)"	"exon (NM_005529, exon 24 of 97)"	-61393	NM_005529	3339	Hs.562227	NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
chr18.2377791.+	chr18	2377791	2377792	+	0	NA	Intergenic	AluSg7|SINE|Alu	193698	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
chr7.156111788.-	chr7	156111788	156111789	-	0	NA	Intergenic	MLT2F|LTR|ERVL	-126494	NR_038232	285889	Hs.407095	NR_038232	ENSG00000233878	LOC285889	-	uncharacterized LOC285889	miscRNA
chr6.24720988.+	chr6	24720988	24720989	+	0	NA	Intergenic	CpG	-1585	NM_030939	81688	Hs.9676	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
chr16.33293941.-	chr16	33293941	33293942	-	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-4761	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	"protein phosphatase 2, regulatory subunit B'', beta pseudogene"	pseudo
chr18.33543851.+	chr18	33543851	33543852	+	0	NA	Intergenic	AluY|SINE|Alu	-8737	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr3.13876357.+	chr3	13876357	13876358	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45261	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr22.24621478.+	chr22	24621478	24621479	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19632	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr22.51126403.+	chr22	51126403	51126404	+	0	NA	"intron (NM_033517, intron 9 of 21)"	"intron (NM_033517, intron 9 of 21)"	13333	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
chr17.27717853.+	chr17	27717853	27717854	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-90	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr8.25907076.+	chr8	25907076	25907077	+	0	NA	Intergenic	Intergenic	-4436	NM_022659	64641	Hs.491292	NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	early B-cell factor 2	protein-coding
chr9.141111314.-	chr9	141111314	141111315	-	0	NA	"intron (NM_001145249, intron 3 of 6)"	AluSc8|SINE|Alu	-4677	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	"family with sequence similarity 157, member B"	protein-coding
chr9.861766.+	chr9	861766	861767	+	0	NA	"intron (NM_021951, intron 2 of 4)"	SVA_B|Other|Other	20076	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr19.48836556.-	chr19	48836556	48836557	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7927	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr2.231921999.-	chr2	231921999	231922000	-	0	NA	"intron (NM_001191037, intron 1 of 23)"	"intron (NM_001191037, intron 1 of 23)"	-421	NR_034059	5707	Hs.3887	NM_001191037	ENSG00000173692	PSMD1	P112|Rpn2|S1	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 1"	protein-coding
chr9.16766059.-	chr9	16766059	16766060	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-104727	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr10.133203513.+	chr10	133203513	133203514	+	0	NA	Intergenic	Intergenic	-93529	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr3.174240464.-	chr3	174240464	174240465	-	0	NA	Intergenic	AluY|SINE|Alu	336647	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr10.324365.-	chr10	324365	324366	-	0	NA	"intron (NM_014974, intron 36 of 36)"	"intron (NM_014974, intron 36 of 36)"	-98431	NM_001202468	10771	Hs.740145	NM_001202464	ENSG00000015171	ZMYND11	BRAM1|BS69	"zinc finger, MYND-type containing 11"	protein-coding
chr11.9503851.-	chr11	9503851	9503852	-	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	-21339	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr11.63651218.+	chr11	63651218	63651219	+	0	NA	"intron (NM_001163296, intron 1 of 16)"	AluJb|SINE|Alu	-4769	NM_017490	2011	Hs.567261	NM_001039469	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	MAP/microtubule affinity-regulating kinase 2	protein-coding
chr5.694003.+	chr5	694003	694004	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-493	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chr17.2311365.-	chr17	2311365	2311366	-	0	NA	"intron (NR_028335, intron 2 of 2)"	AluSz|SINE|Alu	7107	NM_020310	4335	Hs.632239	NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3	"MNT, MAX dimerization protein"	protein-coding
chr11.62247552.-	chr11	62247552	62247553	-	0	NA	"intron (NM_024060, intron 5 of 5)"	"intron (NM_024060, intron 5 of 5)"	-61045	NM_003357	7356	Hs.523732	NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	"secretoglobin, family 1A, member 1 (uteroglobin)"	protein-coding
chr9.137722640.-	chr9	137722640	137722641	-	0	NA	"intron (NM_000093, intron 64 of 65)"	"intron (NM_000093, intron 64 of 65)"	-18575	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	miscRNA
chr2.10405903.+	chr2	10405903	10405904	+	0	NA	Intergenic	Intergenic	-37127	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr14.106358720.+	chr14	106358720	106358721	+	0	NA	Intergenic	Intergenic	-25118	NR_026800	9834	Hs.649259	NM_014151		KIAA0125	C14orf110|FAM30A	KIAA0125	miscRNA
chr3.186441586.+	chr3	186441586	186441587	+	0	NA	"intron (NM_001166451, intron 3 of 9)"	AluSx|SINE|Alu	6488	NM_000893	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
chr3.47865626.-	chr3	47865626	47865627	-	0	NA	"intron (NM_014966, intron 5 of 22)"	AluSx|SINE|Alu	-21227	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|RETCOR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding
chr8.43403642.-	chr8	43403642	43403643	-	0	NA	Intergenic	GSATX|Satellite|centr	-256057	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	"POTE ankyrin domain family, member A"	protein-coding
chr12.33592878.+	chr12	33592878	33592879	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-124	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr2.192374862.-	chr2	192374862	192374863	-	0	NA	Intergenic	AluY|SINE|Alu	167936	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr10.32358166.+	chr10	32358166	32358167	+	0	NA	Intergenic	AluSg7|SINE|Alu	-12795	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr14.105242457.+	chr14	105242457	105242458	+	0	NA	"intron (NM_001014432, intron 5 of 14)"	"intron (NM_001014432, intron 5 of 14)"	17481	NM_005163	207	Hs.525622	NM_001014431	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
chr20.13654593.-	chr20	13654593	13654594	-	0	NA	Intergenic	AluY|SINE|Alu	35010	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr9.14830635.+	chr9	14830635	14830636	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51104	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr22.24621656.-	chr22	24621656	24621657	-	0	NA	"intron (NM_001099781, intron 8 of 11)"	"intron (NM_001099781, intron 8 of 11)"	-19454	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr1.178011437.+	chr1	178011437	178011438	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-4295	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
chr10.95605044.+	chr10	95605044	95605045	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-48686	NM_153226	159371	Hs.744369	NM_001134658	ENSG00000176273	SLC35G1	C10orf60|TMEM20	"solute carrier family 35, member G1"	protein-coding
chr16.9185081.-	chr16	9185081	9185082	-	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	456	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr17.65335418.-	chr17	65335418	65335419	-	0	NA	Intergenic	AluSx|SINE|Alu	-27303	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 12"	protein-coding
chr20.43342003.-	chr20	43342003	43342004	-	0	NA	Intergenic	AluSx|SINE|Alu	1882	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr1.21835731.-	chr1	21835731	21835732	-	0	NA	promoter-TSS (NM_001177520)	promoter-TSS (NM_001177520)	127	NM_001127501	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	"alkaline phosphatase, liver/bone/kidney"	protein-coding
chr7.140400258.+	chr7	140400258	140400259	+	0	NA	"intron (NM_004546, intron 1 of 3)"	"intron (NM_004546, intron 1 of 3)"	-3381	NR_024454	100134713	Hs.743663	NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	miscRNA
chr15.42362145.+	chr15	42362145	42362146	+	0	NA	"exon (NM_178034, exon 19 of 20)"	"exon (NM_178034, exon 19 of 20)"	-19244	NM_001206670	123745	Hs.668060	NM_001080490	ENSG00000188089	PLA2G4E	-	"phospholipase A2, group IVE"	protein-coding
chr11.68671237.+	chr11	68671237	68671238	+	0	NA	promoter-TSS (NM_002180)	promoter-TSS (NM_002180)	66	NM_181514	219927	Hs.503047	NM_181514	ENSG00000197345	MRPL21	L21mt|MRP-L21	mitochondrial ribosomal protein L21	protein-coding
chr10.43563195.+	chr10	43563195	43563196	+	0	NA	Intergenic	Intergenic	-9322	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr7.4516786.+	chr7	4516786	4516787	+	0	NA	Intergenic	AluSx1|SINE|Alu	-205144	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
chr3.42642507.-	chr3	42642507	42642508	-	0	NA	promoter-TSS (NM_001201572)	promoter-TSS (NM_001201572)	-65	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr15.89714209.-	chr15	89714209	89714210	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50713	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr16.632071.-	chr16	632071	632072	-	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	7286	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr16.2286909.-	chr16	2286909	2286910	-	0	NA	"exon (NM_001374, exon 2 of 7)"	"exon (NM_001374, exon 2 of 7)"	-441	NM_001374	1775	Hs.103503	NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease I-like 2	protein-coding
chrX.122910231.-	chrX	122910231	122910232	-	0	NA	Intergenic	AluJo|SINE|Alu	43327	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr8.144124772.-	chr8	144124772	144124773	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4093	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr12.1605384.+	chr12	1605384	1605385	+	0	NA	TTS (NR_027946)	TTS (NR_027946)	-4273	NR_028415	100292680	Hs.391695	NR_028415		LOC100292680	-	uncharacterized LOC100292680	miscRNA
chr9.90884999.-	chr9	90884999	90885000	-	0	NA	Intergenic	AluY|SINE|Alu	118298	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN	spindlin 1	protein-coding
chr15.56465889.-	chr15	56465889	56465890	-	0	NA	"intron (NM_022841, intron 2 of 8)"	AluSq|SINE|Alu	-69594	NM_022841	64864	Hs.282855	NM_022841	ENSG00000181827	RFX7	RFXDC2	"regulatory factor X, 7"	protein-coding
chr4.88257201.-	chr4	88257201	88257202	-	0	NA	TTS (NM_016245)	TTS (NM_016245)	13145	NM_178135	345275	Hs.284414	NM_001136230	ENSG00000170509	HSD17B13	NIIL497|SCDR9|SDR16C3	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding
chr19.17434553.+	chr19	17434553	17434554	+	0	NA	TTS (NM_024050)	TTS (NM_024050)	11085	NM_020959	57719	Hs.590990	NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
chr9.68413147.-	chr9	68413147	68413148	-	0	NA	Intergenic	LSAU|Satellite|Satellite	-41228	NR_033907	642236	Hs.650100	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
chr15.81247687.-	chr15	81247687	81247688	-	0	NA	Intergenic	AluY|SINE|Alu	-34518	NM_015154	23184	Hs.732380	NM_015154	ENSG00000117899	MESDC2	BOCA|MESD	mesoderm development candidate 2	protein-coding
chr2.241380804.-	chr2	241380804	241380805	-	0	NA	"intron (NM_002081, intron 1 of 8)"	"intron (NM_002081, intron 1 of 8)"	-5689	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
chr8.134584557.+	chr8	134584557	134584558	+	0	NA	promoter-TSS (NM_173344)	promoter-TSS (NM_173344)	-374	NM_003033	6482	Hs.374257	NM_003033	ENSG00000008513	ST3GAL1	"Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O"	"ST3 beta-galactoside alpha-2,3-sialyltransferase 1"	protein-coding
chr2.10442965.+	chr2	10442965	10442966	+	0	NA	promoter-TSS (NM_134421)	promoter-TSS (NM_134421)	-65	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr7.2943528.+	chr7	2943528	2943529	+	0	NA	Intergenic	Intergenic	-59569	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr20.61448643.+	chr20	61448643	61448644	+	0	NA	"intron (NM_001853, intron 1 of 31)"	CpG	229	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	"collagen, type IX, alpha 3"	protein-coding
chrX.53111555.-	chrX	53111555	53111556	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-13	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr4.185655168.+	chr4	185655168	185655169	+	0	NA	"intron (NM_024629, intron 1 of 12)"	CpG	118	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr9.127626456.-	chr9	127626456	127626457	-	0	NA	Intergenic	Intergenic	2216	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr6.12012471.+	chr6	12012471	12012472	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-253	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr11.296477.+	chr11	296477	296478	+	0	NA	TTS (NM_025092)	TTS (NM_025092)	3049	NM_001025295	387733	Hs.443469	NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
chr22.50580022.+	chr22	50580022	50580023	+	0	NA	"intron (NM_001164104, intron 15 of 25)"	AluJb|SINE|Alu	-5462	NM_001164106	54456	Hs.62880	NM_001164104	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	"Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)"	protein-coding
chr22.38336388.-	chr22	38336388	38336389	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13266	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr17.7011449.-	chr17	7011449	7011450	-	0	NA	"intron (NM_001201352, intron 4 of 8)"	"intron (NM_001201352, intron 4 of 8)"	-6180	NM_080914	433	Hs.654440	NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
chr16.443653.+	chr16	443653	443654	+	0	NA	TTS (NR_024453)	TTS (NR_024453)	-3539	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr16.4307872.+	chr16	4307872	4307873	+	0	NA	"3' UTR (NM_003223, exon 7 of 7)"	"3' UTR (NM_003223, exon 7 of 7)"	-4082	NR_039999	100507501	Hs.632979	NR_039999	ENSG00000262468	LOC100507501	-	uncharacterized LOC100507501	miscRNA
chr4.74125022.+	chr4	74125022	74125023	+	0	NA	promoter-TSS (NM_198889)	promoter-TSS (NM_198889)	-520	NM_198889	26057	Hs.743705	NM_032217	ENSG00000132466	ANKRD17	GTAR|NY-BR-16	ankyrin repeat domain 17	protein-coding
chr2.11797048.-	chr2	11797048	11797049	-	0	NA	Intergenic	CpG	-13281	NM_012344	23620	Hs.131138	NM_012344	ENSG00000169006	NTSR2	NTR2	neurotensin receptor 2	protein-coding
chr5.178657989.-	chr5	178657989	178657990	-	0	NA	"intron (NM_021599, intron 3 of 10)"	AluSx1|SINE|Alu	-114442	NM_021599	9509	Hs.23871	NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	"ADAM metallopeptidase with thrombospondin type 1 motif, 2"	protein-coding
chr6.9173333.+	chr6	9173333	9173334	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	520891	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	LINC00078|NCRNA00078	highly up-regulated in liver cancer long non-coding RNA	miscRNA
chr11.2942716.-	chr11	2942716	2942717	-	0	NA	"intron (NM_002555, intron 8 of 10)"	"intron (NM_002555, intron 8 of 10)"	-7934	NM_003311	7262	Hs.154036	NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	"pleckstrin homology-like domain, family A, member 2"	protein-coding
chr4.3264007.+	chr4	3264007	3264008	+	0	NA	Intergenic	Intergenic	13240	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
chr3.12838231.+	chr3	12838231	12838232	+	0	NA	promoter-TSS (NM_001162499)	promoter-TSS (NM_001162499)	60	NM_001162499	23066	Hs.343664	NM_001162499	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding
chr6.33500255.-	chr6	33500255	33500256	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-47815	NM_001188	578	Hs.485139	NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
chr16.1023719.-	chr16	1023719	1023720	-	0	NA	"intron (NR_033645, intron 1 of 11)"	AluY|SINE|Alu	2735	NM_022773	64788	Hs.732776	NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
chrX.112142807.-	chrX	112142807	112142808	-	0	NA	Intergenic	AluY|SINE|Alu	58764	NM_133265	154796	Hs.528051	NM_001113490	ENSG00000126016	AMOT	-	angiomotin	protein-coding
chr9.133788040.+	chr9	133788040	133788041	+	0	NA	"intron (NM_032843, intron 4 of 6)"	AluSx|SINE|Alu	-18815	NM_198180	347148	Hs.660704	NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
chr6.168841501.+	chr6	168841501	168841502	+	0	NA	promoter-TSS (NM_022138)	promoter-TSS (NM_022138)	-330	NM_022138	64094	Hs.487200	NM_001166412	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
chrX.9363357.-	chrX	9363357	9363358	-	0	NA	Intergenic	Intergenic	67978	NM_001139468	6907	Hs.495656	NM_001139466	ENSG00000101849	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
chr19.45660331.+	chr19	45660331	45660332	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3077	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr5.1445658.+	chr5	1445658	1445659	+	0	NA	promoter-TSS (NM_001044)	promoter-TSS (NM_001044)	-115	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr7.5355970.-	chr7	5355970	5355971	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33409	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr3.47411317.-	chr3	47411317	47411318	-	0	NA	Intergenic	AluSq|SINE|Alu	11174	NM_015466	25930	Hs.25524	NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|PTP-TD14	"protein tyrosine phosphatase, non-receptor type 23"	protein-coding
chr15.41613503.+	chr15	41613503	41613504	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11316	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr16.67199114.+	chr16	67199114	67199115	+	0	NA	"intron (NM_001040667, intron 3 of 14)"	CpG	1826	NM_001538	3299	Hs.710714	NM_001040667	ENSG00000102878	HSF4	CTM	heat shock transcription factor 4	protein-coding
chr14.101189463.+	chr14	101189463	101189464	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3739	NM_003836	8788	Hs.533717	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta-like 1 homolog (Drosophila)	protein-coding
chr5.91967014.+	chr5	91967014	91967015	+	0	NA	Intergenic	LTR12C|LTR|ERV1	939485	NR_015369	441094	Hs.457407	NR_015369	ENSG00000237187	FLJ42709	-	uncharacterized LOC441094	miscRNA
chr7.5574478.+	chr7	5574478	5574479	+	0	NA	Intergenic	AluJb|SINE|Alu	-4246	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr22.50959111.-	chr22	50959111	50959112	-	0	NA	TTS (NM_014551)	TTS (NM_014551)	-4922	NM_001169111	9997	Hs.730607	NM_001169109	ENSG00000130489	SCO2	SCO1L	SCO2 cytochrome c oxidase assembly protein	protein-coding
chr6.126111993.+	chr6	126111993	126111994	+	0	NA	promoter-TSS (NM_181782)	promoter-TSS (NM_181782)	84	NM_001199621	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chr19.4612712.-	chr19	4612712	4612713	-	0	NA	Intergenic	AluY|SINE|Alu	26815	NM_152362	126282	Hs.465643	NM_001167942	ENSG00000185361	TNFAIP8L1	TIPE1	"tumor necrosis factor, alpha-induced protein 8-like 1"	protein-coding
chr8.144124770.-	chr8	144124770	144124771	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4091	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr5.31622034.+	chr5	31622034	31622035	+	0	NA	Intergenic	AluSq|SINE|Alu	89661	NM_018356	55322	Hs.519246	NM_018356	ENSG00000082213	C5orf22	-	chromosome 5 open reading frame 22	protein-coding
chr6.27035942.-	chr6	27035942	27035943	-	0	NA	Intergenic	AluJr|SINE|Alu	47857	NR_026776	100270746	Hs.590428	NR_026776		LOC100270746	-	uncharacterized LOC100270746	miscRNA
chr2.204121189.+	chr2	204121189	204121190	+	0	NA	"intron (NM_177538, intron 4 of 12)"	AluSx|SINE|Alu	18025	NM_177538	57404	Hs.707756	NM_177538		CYP20A1	CYP-M	"cytochrome P450, family 20, subfamily A, polypeptide 1"	protein-coding
chr13.114814061.-	chr13	114814061	114814062	-	0	NA	"intron (NM_007368, intron 3 of 23)"	CpG	-84034	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr7.6843788.+	chr7	6843788	6843789	+	0	NA	"intron (NM_198097, intron 12 of 14)"	AluSz|SINE|Alu	22138	NM_198097	221960	Hs.567779	NM_198097		CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
chr11.73020395.+	chr11	73020395	73020396	+	0	NA	"exon (NM_014786, exon 1 of 21)"	"exon (NM_014786, exon 1 of 21)"	732	NM_014786	9828	Hs.573929	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
chrX.1379060.+	chrX	1379060	1379061	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8633	NM_172249	1438	Hs.520937	NM_001161529	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	"colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)"	protein-coding
chr19.40422040.-	chr19	40422040	40422041	-	0	NA	"intron (NM_003890, intron 4 of 35)"	AluSx|SINE|Alu	-18493	NM_003890	8857	Hs.111732	NM_003890	ENSG00000090920	FCGBP	FC(GAMMA)BP	Fc fragment of IgG binding protein	protein-coding
chr7.53587034.+	chr7	53587034	53587035	+	0	NA	Intergenic	AluY|SINE|Alu	292590	NR_038371	401337	Hs.531378	NM_001001707	ENSG00000205628	FLJ45974	-	uncharacterized LOC401337	miscRNA
chr22.34378912.-	chr22	34378912	34378913	-	0	NA	Intergenic	AluSx1|SINE|Alu	62496	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr12.112620038.-	chr12	112620038	112620039	-	0	NA	"intron (NM_001109662, intron 62 of 75)"	AluJo|SINE|Alu	-56689	NM_006700	10906	Hs.5148	NM_001143906	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
chr10.69822236.-	chr10	69822236	69822237	-	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	-12867	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr6.12012469.+	chr6	12012469	12012470	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-255	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr1.200638842.+	chr1	200638842	200638843	+	0	NA	"intron (NM_001031725, intron 1 of 7)"	CpG	284	NM_001031725	83479	Hs.497332	NM_031306	ENSG00000118197	DDX59	ZNHIT5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding
chr21.47343951.-	chr21	47343951	47343952	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57712	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr6.166934804.-	chr6	166934804	166934805	-	0	NA	"intron (NM_001006932, intron 4 of 21)"	"intron (NM_001006932, intron 4 of 21)"	11883	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	miscRNA
chr2.230932976.-	chr2	230932976	230932977	-	0	NA	"intron (NM_152527, intron 1 of 4)"	CpG	-739	NM_152527	151473	Hs.504317	NM_152527	ENSG00000163053	SLC16A14	MCT14	"solute carrier family 16, member 14 (monocarboxylic acid transporter 14)"	protein-coding
chr14.105399781.-	chr14	105399781	105399782	-	0	NA	TTS (NM_138790)	TTS (NM_138790)	-8594	NM_138790	122618	Hs.407101	NM_138790	ENSG00000166428	PLD4	C14orf175	"phospholipase D family, member 4"	protein-coding
chr2.44058994.-	chr2	44058994	44058995	-	0	NA	"exon (NM_022436, exon 4 of 13)"	"exon (NM_022436, exon 4 of 13)"	-6964	NM_022436	64240	Hs.132992	NM_022436	ENSG00000138075	ABCG5	STSL	"ATP-binding cassette, sub-family G (WHITE), member 5"	protein-coding
chr15.41613114.+	chr15	41613114	41613115	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11705	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr3.196619102.+	chr3	196619102	196619103	+	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	24375	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr19.10408188.+	chr19	10408188	10408189	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7533	NM_003259	7087	Hs.465862	NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	"intercellular adhesion molecule 5, telencephalin"	protein-coding
chrM.16354.+	chrM	16354	16355	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.48207409.-	chr17	48207409	48207410	-	0	NA	promoter-TSS (NM_174920)	promoter-TSS (NM_174920)	163	NM_001257359	201191	Hs.567769	NM_001257359	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
chr3.82554735.+	chr3	82554735	82554736	+	0	NA	Intergenic	MER52A|LTR|ERV1	-743785	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr17.25676758.-	chr17	25676758	25676759	-	0	NA	Intergenic	MER52D|LTR|ERV1	-55652	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr2.70416566.-	chr2	70416566	70416567	-	0	NA	"intron (NM_017880, intron 1 of 9)"	"intron (NM_017880, intron 1 of 9)"	-1585	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr12.111714732.-	chr12	111714732	111714733	-	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	-92193	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chrX.42939950.+	chrX	42939950	42939951	+	0	NA	Intergenic	AluSx|SINE|Alu	-302464	NR_002191	80316	Hs.127689	NR_002191		PPP1R2P9	I-4	"protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9"	pseudo
chr1.8021826.+	chr1	8021826	8021827	+	0	NA	"5' UTR (NM_007262, exon 1 of 7)"	"5' UTR (NM_007262, exon 1 of 7)"	112	NM_001123377	11315	Hs.419640	NM_001123377	ENSG00000116288	PARK7	DJ-1|DJ1	parkinson protein 7	protein-coding
chr10.3110942.+	chr10	3110942	3110943	+	0	NA	"intron (NM_001242339, intron 1 of 23)"	CpG-2527	123	NM_001242339	5214	Hs.26010	NM_001242339	ENSG00000067057	PFKP	PFK-C|PFKF	"phosphofructokinase, platelet"	protein-coding
chr12.105389735.-	chr12	105389735	105389736	-	0	NA	Intergenic	AluY|SINE|Alu	-9637	NM_152318	121053	Hs.295563	NM_152318		C12orf45	-	chromosome 12 open reading frame 45	protein-coding
chr12.132628230.+	chr12	132628230	132628231	+	0	NA	promoter-TSS (NM_024078)	promoter-TSS (NM_024078)	650	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding
chr2.220361246.+	chr2	220361246	220361247	+	0	NA	Intergenic	Intergenic	-2341	NM_013335	29926	Hs.27059	NM_013335	ENSG00000144591	GMPPA	-	GDP-mannose pyrophosphorylase A	protein-coding
chr2.10916515.-	chr2	10916515	10916516	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36445	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr10.133203400.-	chr10	133203400	133203401	-	0	NA	Intergenic	Intergenic	93416	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1-like	protein-coding
chr12.12419955.-	chr12	12419955	12419956	-	0	NA	promoter-TSS (NM_002336)	promoter-TSS (NM_002336)	144	NM_002336	4040	Hs.658913	NM_002336	ENSG00000070018	LRP6	ADCAD2	low density lipoprotein receptor-related protein 6	protein-coding
chr19.22949513.-	chr19	22949513	22949514	-	0	NA	"intron (NM_001080409, intron 3 of 3)"	AluSp|SINE|Alu	-17460	NM_001080409	7652	Hs.737077	NM_001080409		ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
chr11.133763867.+	chr11	133763867	133763868	+	0	NA	Intergenic	AluY|SINE|Alu	4609	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr1.15927952.-	chr1	15927952	15927953	-	0	NA	Intergenic	AluSg4|SINE|Alu	16001	NM_032341	84301	Hs.718857	NM_032341		DDI2	RP4-680D5.5	DNA-damage inducible 1 homolog 2 (S. cerevisiae)	protein-coding
chr19.18416264.-	chr19	18416264	18416265	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17737	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr21.34914889.+	chr21	34914889	34914890	+	0	NA	promoter-TSS (NM_000819)	promoter-TSS (NM_000819)	306	NM_001136005	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"	protein-coding
chr2.207036847.-	chr2	207036847	207036848	-	0	NA	Intergenic	SVA_D|Other|Other	-9895	NR_002590	619569	Hs.742407	NR_002590		SNORA41	ACA41	"small nucleolar RNA, H/ACA box 41"	snoRNA
chr12.106975433.-	chr12	106975433	106975434	-	0	NA	"intron (NR_040246, intron 1 of 3)"	CpG	1252	NM_213594	5992	Hs.388827	NM_001206691	ENSG00000111783	RFX4	NYD-SP10	"regulatory factor X, 4 (influences HLA class II expression)"	protein-coding
chr4.129396360.+	chr4	129396360	129396361	+	0	NA	Intergenic	AluY|SINE|Alu	-186376	NM_006320	10424	Hs.507910	NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
chr13.25027212.+	chr13	25027212	25027213	+	0	NA	"intron (NM_006437, intron 23 of 33)"	AluSx1|SINE|Alu	59736	NM_006437	143	Hs.117825	NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	"poly (ADP-ribose) polymerase family, member 4"	protein-coding
chr9.108210427.-	chr9	108210427	108210428	-	0	NA	"5' UTR (NM_001145313, exon 1 of 14)"	"5' UTR (NM_001145313, exon 1 of 14)"	-102	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr11.45810291.-	chr11	45810291	45810292	-	0	NA	Intergenic	AluSz6|SINE|Alu	15332	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chrX.153736343.+	chrX	153736343	153736344	+	0	NA	"intron (NM_001171133, intron 5 of 8)"	"intron (NM_001171133, intron 5 of 8)"	8223	NM_021806	60343	Hs.289108	NM_001171132	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	"family with sequence similarity 3, member A"	protein-coding
chr14.104021227.-	chr14	104021227	104021228	-	0	NA	Intergenic	Intergenic	-7428	NM_001015049	9529	Hs.5443	NM_001015048	ENSG00000166170	BAG5	BAG-5	BCL2-associated athanogene 5	protein-coding
chr16.1845122.-	chr16	1845122	1845123	-	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	213	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr6.46742408.-	chr6	46742408	46742409	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18686	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr11.24538899.+	chr11	24538899	24538900	+	0	NA	"intron (NM_001252008, intron 1 of 11)"	AluY|SINE|Alu	20383	NM_001252008	338645	Hs.655032	NM_001009909	ENSG00000187398	LUZP2	KFSP2566|PRO6246	leucine zipper protein 2	protein-coding
chr19.2424680.-	chr19	2424680	2424681	-	0	NA	TTS (NM_012458)	TTS (NM_012458)	-3195	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr12.6579729.-	chr12	6579729	6579730	-	0	NA	"5' UTR (NM_016830, exon 1 of 5)"	"5' UTR (NM_016830, exon 1 of 5)"	-114	NM_014231	6843	Hs.20021	NM_014231	ENSG00000139190	VAMP1	SYB1|VAMP-1	vesicle-associated membrane protein 1 (synaptobrevin 1)	protein-coding
chr5.170687211.+	chr5	170687211	170687212	+	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	-49077	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr19.860849.-	chr19	860849	860850	-	0	NA	"intron (NM_001928, intron 2 of 4)"	CpG-12140	-1184	NM_001928	1675	Hs.155597	NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D (adipsin)	protein-coding
chr13.114929686.-	chr13	114929686	114929687	-	0	NA	Intergenic	Intergenic	31591	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr2.113965321.+	chr2	113965321	113965322	+	0	NA	Intergenic	AluY|SINE|Alu	-27783	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	LOC654433	-	uncharacterized LOC654433	miscRNA
chr17.74381005.+	chr17	74381005	74381006	+	0	NA	promoter-TSS (NM_001142602)	promoter-TSS (NM_001142602)	-284	NM_001142602	8877	Hs.68061	NM_001142601	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
chr14.71374351.+	chr14	71374351	71374352	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	229	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr1.183257565.-	chr1	183257565	183257566	-	0	NA	"intron (NM_015039, intron 4 of 10)"	"intron (NM_015039, intron 4 of 10)"	-16444	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chr2.99531347.+	chr2	99531347	99531348	+	0	NA	"intron (NM_207362, intron 1 of 9)"	"intron (NM_207362, intron 1 of 9)"	21337	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211-like	protein-coding
chr2.30144481.+	chr2	30144481	30144482	+	0	NA	promoter-TSS (NM_004304)	promoter-TSS (NM_004304)	-4	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
chr6.12012492.+	chr6	12012492	12012493	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-232	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
chr19.38279412.-	chr19	38279412	38279413	-	0	NA	Intergenic	AluSx|SINE|Alu	9182	NM_152360	126231	Hs.531262	NM_001172689	ENSG00000189144	ZNF573	-	zinc finger protein 573	protein-coding
chrM.3246.-	chrM	3246	3247	-	0	NA	NA	tRNA-Leu-TTA(m)|tRNA|tRNA	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr17.80844706.+	chr17	80844706	80844707	+	0	NA	"intron (NM_005993, intron 15 of 38)"	AluSz|SINE|Alu	-46775	NM_024702	79755	Hs.653124	NM_024702	ENSG00000141579	ZNF750	ZFP750	zinc finger protein 750	protein-coding
chrX.21676453.-	chrX	21676453	21676454	-	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	5	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr10.71562751.-	chr10	71562751	71562752	-	0	NA	"intron (NM_001130103, intron 1 of 39)"	CpG	-1107	NM_080805	1305	Hs.695934	NM_001130103	ENSG00000197467	COL13A1	COLXIIIA1	"collagen, type XIII, alpha 1"	protein-coding
chr5.57859862.-	chr5	57859862	57859863	-	0	NA	Intergenic	SVA_A|Other|Other	19077	NM_138453	115827	Hs.482173	NM_138453		RAB3C	-	"RAB3C, member RAS oncogene family"	protein-coding
chr7.28449715.-	chr7	28449715	28449716	-	0	NA	"intron (NM_182899, intron 1 of 9)"	CpG	2429	NM_182898	9586	Hs.437075	NM_001011666	ENSG00000146592	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
chr2.208031313.-	chr2	208031313	208031314	-	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	-267	NM_001270942	8609	Hs.471221	NM_001270942	ENSG00000118263	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
chrX.103014790.-	chrX	103014790	103014791	-	0	NA	Intergenic	AluY|SINE|Alu	16649	NM_001128834	5354	Hs.1787	NM_000533	ENSG00000123560	PLP1	HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
chr17.77768637.-	chr17	77768637	77768638	-	0	NA	"exon (NM_020649, exon 5 of 5)"	"exon (NM_020649, exon 5 of 5)"	-2278	NM_020649	57332	Hs.387258	NM_020649		CBX8	PC3|RC1	chromobox homolog 8	protein-coding
chr18.19632290.+	chr18	19632290	19632291	+	0	NA	Intergenic	AluSg4|SINE|Alu	-117114	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr12.95611264.-	chr12	95611264	95611265	-	0	NA	promoter-TSS (NM_017599)	promoter-TSS (NM_017599)	24	NM_018351	55785	Hs.506381	NM_018351	ENSG00000180263	FGD6	ZFYVE24	"FYVE, RhoGEF and PH domain containing 6"	protein-coding
chr20.36793595.-	chr20	36793595	36793596	-	0	NA	"exon (NM_004613, exon 1 of 13)"	"exon (NM_004613, exon 1 of 13)"	-105	NM_004613	7052	Hs.517033	NM_004613	ENSG00000198959	TGM2	G-ALPHA-h|GNAH|TG2|TGC	"transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)"	protein-coding
chr2.4156361.+	chr2	4156361	4156362	+	0	NA	Intergenic	CpG	-134739	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LOC100505964	-	uncharacterized LOC100505964	miscRNA
chr2.905553.-	chr2	905553	905554	-	0	NA	Intergenic	Intergenic	41001	NM_018968	54221	Hs.595069	NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	"syntrophin, gamma 2"	protein-coding
chr2.198058520.-	chr2	198058520	198058521	-	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	-117001	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr3.4664350.+	chr3	4664350	4664351	+	0	NA	"intron (NM_002222, intron 4 of 57)"	AluSc|SINE|Alu	128924	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	miscRNA
chr20.46387719.-	chr20	46387719	46387720	-	0	NA	"intron (NM_198596, intron 1 of 20)"	L2a|LINE|L2	-27089	NM_018837	55959	Hs.162016	NM_001161841	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
chr16.1845117.+	chr16	1845117	1845118	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-208	NR_027389	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chrX.31406317.+	chrX	31406317	31406318	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120098	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr4.185174129.-	chr4	185174129	185174130	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35015	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr19.18180393.-	chr19	18180393	18180394	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17304	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr7.3124654.-	chr7	3124654	3124655	-	0	NA	Intergenic	AluSg7|SINE|Alu	41145	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chrM.6567.+	chrM	6567	6568	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr6.137113612.+	chr6	137113612	137113613	+	0	NA	promoter-TSS (NM_005923)	promoter-TSS (NM_005923)	44	NM_005923	4217	Hs.186486	NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
chr5.79863390.-	chr5	79863390	79863391	-	0	NA	"intron (NM_001004441, intron 2 of 4)"	AluSq|SINE|Alu	-2914	NM_001004441	340120	Hs.519404	NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
chr6.42897278.+	chr6	42897278	42897279	+	0	NA	"5' UTR (NM_006586, exon 1 of 6)"	"5' UTR (NM_006586, exon 1 of 6)"	418	NM_006586	10695	Hs.414099	NM_183010	ENSG00000137161	CNPY3	CAG4A|ERDA5|PRAT4A|TNRC5	canopy 3 homolog (zebrafish)	protein-coding
chr19.17830645.+	chr19	17830645	17830646	+	0	NA	"intron (NM_018174, intron 1 of 6)"	CpG	342	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chr17.79008825.-	chr17	79008825	79008826	-	0	NA	promoter-TSS (NM_001144888)	promoter-TSS (NM_001144888)	122	NM_017451	10458	Hs.128316	NM_001144888	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1-associated protein 2	protein-coding
chr2.10424799.+	chr2	10424799	10424800	+	0	NA	Intergenic	Intergenic	-18231	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr9.133536388.-	chr9	133536388	133536389	-	0	NA	Intergenic	CpG	3593	NM_021619	59335	Hs.495311	NM_021619	ENSG00000130711	PRDM12	PFM9	PR domain containing 12	protein-coding
chr3.122466694.+	chr3	122466694	122466695	+	0	NA	"intron (NM_024610, intron 6 of 7)"	SVA_D|Other|Other	45972	NM_024610	79663	Hs.29169	NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB (heat shock 27kDa) associated protein 1	protein-coding
chr13.110551487.-	chr13	110551487	110551488	-	0	NA	Intergenic	AluSx|SINE|Alu	112573	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
chr16.632073.+	chr16	632073	632074	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7284	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr11.86934356.+	chr11	86934356	86934357	+	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	185470	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr11.67351068.-	chr11	67351068	67351069	-	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-2	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr19.267126.-	chr19	267126	267127	-	0	NA	Intergenic	CpG	-24043	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
chr19.13497342.-	chr19	13497342	13497343	-	0	NA	"intron (NM_023035, intron 3 of 46)"	AluSx1|SINE|Alu	-119932	NM_001127222	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	"calcium channel, voltage-dependent, P/Q type, alpha 1A subunit"	protein-coding
chr18.46969475.+	chr18	46969475	46969476	+	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	17604	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr13.45945037.-	chr13	45945037	45945038	-	0	NA	"intron (NR_024458, intron 4 of 10)"	AluJo|SINE|Alu	-29557	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	miscRNA
chrX.64114178.-	chrX	64114178	64114179	-	0	NA	Intergenic	AluY|SINE|Alu	-82235	NM_018684	55906	Hs.28249	NM_001178032		ZC4H2	HCA127|KIAA1166	"zinc finger, C4H2 domain containing"	protein-coding
chr2.136403862.+	chr2	136403862	136403863	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19105	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr9.141038904.-	chr9	141038904	141038905	-	0	NA	Intergenic	Intergenic	5661	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	"tubulin, beta pseudogene 5"	pseudo
chr17.73439500.+	chr17	73439500	73439501	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13164	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr3.1144533.+	chr3	1144533	1144534	+	0	NA	"intron (NM_014461, intron 1 of 22)"	AluY|SINE|Alu	9904	NM_014461	27255	Hs.387300	NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
chr7.126894049.-	chr7	126894049	126894050	-	0	NA	Intergenic	CpG-24841	1621	NM_001127323	2918	Hs.449625	NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	"glutamate receptor, metabotropic 8"	protein-coding
chr16.84670293.-	chr16	84670293	84670294	-	0	NA	Intergenic	AluY|SINE|Alu	11838	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr14.53317541.+	chr14	53317541	53317542	+	0	NA	Intergenic	AluY|SINE|Alu	-59155	NM_198066	64841	Hs.478025	NM_198066	ENSG00000100522	GNPNAT1	GNPNAT|Gpnat1	glucosamine-phosphate N-acetyltransferase 1	protein-coding
chr5.127515755.-	chr5	127515755	127515756	-	0	NA	"intron (NM_001256461, intron 21 of 25)"	AluY|SINE|Alu	-96272	NM_001256461	6558	Hs.712970	NM_001046	ENSG00000064651	SLC12A2	BSC|BSC2|NKCC1	"solute carrier family 12 (sodium/potassium/chloride transporters), member 2"	protein-coding
chr5.133831558.-	chr5	133831558	133831559	-	0	NA	Intergenic	AluY|SINE|Alu	30240	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr5.175488238.+	chr5	175488238	175488239	+	0	NA	Intergenic	CpG	-2474	NM_001265615	202134	Hs.368516	NM_001079529	ENSG00000182230	FAM153B	-	"family with sequence similarity 153, member B"	protein-coding
chr3.177829372.+	chr3	177829372	177829373	+	0	NA	Intergenic	AluSx|SINE|Alu	-307617	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	KCNMB2-IT1	-	KCNMB2 intronic transcript 1 (non-protein coding)	miscRNA
chr11.2051323.-	chr11	2051323	2051324	-	0	NA	Intergenic	Intergenic	32258	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chr10.37024499.+	chr10	37024499	37024500	+	0	NA	Intergenic	AluY|SINE|Alu	-390286	NM_052997	91074	Hs.373787	NM_052997	ENSG00000148513	ANKRD30A	NY-BR-1	ankyrin repeat domain 30A	protein-coding
chr10.135192271.+	chr10	135192271	135192272	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	-470	NM_207128	196743	Hs.532469	NM_207125	ENSG00000148832	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
chr8.27556661.-	chr8	27556661	27556662	-	0	NA	Intergenic	AluY|SINE|Alu	2533	NR_037417	100500858		NR_037417		MIR3622A	-	microRNA 3622a	miscRNA
chr12.57177858.+	chr12	57177858	57177859	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20750	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr22.38498794.+	chr22	38498794	38498795	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7882	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr12.102499120.-	chr12	102499120	102499121	-	0	NA	"intron (NM_024057, intron 2 of 8)"	AluJb|SINE|Alu	-13241	NM_024057	79023	Hs.444276	NM_024057	ENSG00000075188	NUP37	p37	nucleoporin 37kDa	protein-coding
chr20.60894812.+	chr20	60894812	60894813	+	0	NA	"exon (NM_005560, exon 51 of 80)"	"exon (NM_005560, exon 51 of 80)"	12801	NR_039915	100616340		NR_039915		MIR4758	-	microRNA 4758	miscRNA
chr16.81439513.+	chr16	81439513	81439514	+	0	NA	Intergenic	Intergenic	20890	NR_039871	100616150		NR_039871	ENSG00000265271	MIR4720	-	microRNA 4720	miscRNA
chr17.2680810.+	chr17	2680810	2680811	+	0	NA	Intergenic	Intergenic	-18922	NM_015085	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr7.148823271.+	chr7	148823271	148823272	+	0	NA	promoter-TSS (NM_020781)	promoter-TSS (NM_020781)	167	NM_001001661	155054	Hs.31743	NM_001001661	ENSG00000204947	ZNF425	-	zinc finger protein 425	protein-coding
chr8.144124767.+	chr8	144124767	144124768	+	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	4088	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr3.42642381.-	chr3	42642381	42642382	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-191	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr9.38829877.+	chr9	38829877	38829878	+	0	NA	Intergenic	AluY|SINE|Alu	208792	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	"family with sequence similarity 201, member A"	miscRNA
chr6.158438933.+	chr6	158438933	158438934	+	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	853	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr6.131190878.-	chr6	131190878	131190879	-	0	NA	"exon (NM_001431, exon 15 of 20)"	"exon (NM_001431, exon 15 of 20)"	-42333	NM_001195597	100507203	Hs.388715	NM_001195597	ENSG00000256162	SMLR1	-	small leucine-rich protein 1	protein-coding
chr3.149374848.+	chr3	149374848	149374849	+	0	NA	"exon (NM_001168280, exon 2 of 7)"	"exon (NM_001168280, exon 2 of 7)"	964	NM_001168280	25937	Hs.594912	NM_001168278	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
chr16.67048146.-	chr16	67048146	67048147	-	0	NA	Intergenic	CpG	-13730	NM_001190201	283848	Hs.734986	NM_001190201	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
chr2.10424815.+	chr2	10424815	10424816	+	0	NA	Intergenic	Intergenic	-18215	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr15.32298453.-	chr15	32298453	32298454	-	0	NA	Intergenic	AluY|SINE|Alu	24233	NM_000746	1139	Hs.713151	XM_003960575		CHRNA7	CHRNA7-2|NACHRA7	"cholinergic receptor, nicotinic, alpha 7 (neuronal)"	protein-coding
chr11.1990796.-	chr11	1990796	1990797	-	0	NA	Intergenic	Intergenic	-20354	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	miscRNA
chr2.240381433.+	chr2	240381433	240381434	+	0	NA	Intergenic	Intergenic	-58790	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr4.177147006.-	chr4	177147006	177147007	-	0	NA	"intron (NM_080874, intron 1 of 6)"	AluSz|SINE|Alu	30184	NM_144644	132851	Hs.481235	NM_144644	ENSG00000150628	SPATA4	SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
chr19.1115959.+	chr19	1115959	1115960	+	0	NA	"intron (NM_014963, intron 17 of 31)"	"intron (NM_014963, intron 17 of 31)"	11310	NM_001039848	2879	Hs.433951	NM_001039847	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
chr6.65337697.-	chr6	65337697	65337698	-	0	NA	"intron (NM_001142800, intron 22 of 42)"	AluY|SINE|Alu	673614	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding
chr5.179581177.-	chr5	179581177	179581178	-	0	NA	"intron (NM_175062, intron 1 of 13)"	"intron (NM_175062, intron 1 of 13)"	-54953	NM_175062	255426	Hs.190559	NM_001031799	ENSG00000146090	RASGEF1C	-	"RasGEF domain family, member 1C"	protein-coding
chr2.207270714.-	chr2	207270714	207270715	-	0	NA	Intergenic	AluY|SINE|Alu	37654	NM_003812	8745	Hs.591643	NM_003812	ENSG00000114948	ADAM23	MDC3	ADAM metallopeptidase domain 23	protein-coding
chr15.55726777.+	chr15	55726777	55726778	+	0	NA	"intron (NR_037923, intron 7 of 15)"	BC200|scRNA|scRNA	26054	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr21.22013092.-	chr21	22013092	22013093	-	0	NA	Intergenic	AluY|SINE|Alu	-162334	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	miscRNA
chr18.49731985.+	chr18	49731985	49731986	+	0	NA	Intergenic	AluY|SINE|Alu	-134557	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1	deleted in colorectal carcinoma	protein-coding
chr2.108084847.-	chr2	108084847	108084848	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-357736	NR_024439	729121	Hs.386155	XR_159390	ENSG00000230651	LOC729121	-	uncharacterized LOC729121	miscRNA
chr2.10916538.-	chr2	10916538	10916539	-	0	NA	"intron (NM_144583, intron 10 of 12)"	"intron (NM_144583, intron 10 of 12)"	-36422	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr12.132353176.-	chr12	132353176	132353177	-	0	NA	Intergenic	Intergenic	26103	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chrX.53165865.+	chrX	53165865	53165866	+	0	NA	Intergenic	AluJo|SINE|Alu	54323	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.32785562.+	chr16	32785562	32785563	+	0	NA	Intergenic	AluSx1|SINE|Alu	-98114	NM_001205265	729355	Hs.741147	NM_001099687		TP53TG3B	-	TP53 target 3B	protein-coding
chr6.170580897.+	chr6	170580897	170580898	+	0	NA	Intergenic	CpG	-9240	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	miscRNA
chr7.8008954.-	chr7	8008954	8008955	-	0	NA	"5' UTR (NM_138426, exon 1 of 8)"	"5' UTR (NM_138426, exon 1 of 8)"	-580	NM_138426	113263	Hs.131673	NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced transcript 1	protein-coding
chr14.73704494.+	chr14	73704494	73704495	+	0	NA	"intron (NM_173462, intron 1 of 25)"	CpG	289	NM_173462	89932	Hs.509909	NM_173462	ENSG00000100767	PAPLN	-	"papilin, proteoglycan-like sulfated glycoprotein"	protein-coding
chr16.68889479.+	chr16	68889479	68889480	+	0	NA	"intron (NM_024562, intron 1 of 17)"	AluSx|SINE|Alu	11970	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
chr8.22438438.+	chr8	22438438	22438439	+	0	NA	"intron (NM_198042, intron 1 of 7)"	"intron (NM_198042, intron 1 of 7)"	451	NM_176871	64236	Hs.632034	NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2 (mystique)	protein-coding
chr7.5557977.+	chr7	5557977	5557978	+	0	NA	Intergenic	AluYc|SINE|Alu	-4578	NM_024963	80028	Hs.706587	NM_024963		FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
chr11.31337040.+	chr11	31337040	31337041	+	0	NA	"intron (NM_181807, intron 3 of 8)"	AluY|SINE|Alu	54317	NM_181807	341019	Hs.592000	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
chr15.34527885.-	chr15	34527885	34527886	-	0	NA	"intron (NM_133647, intron 23 of 24)"	AluSq2|SINE|Alu	-10640	NM_016454	51234	Hs.250905	NM_016454	ENSG00000128463	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
chr16.1115504.+	chr16	1115504	1115505	+	0	NA	"non-coding (NR_027242, exon 4 of 4)"	"non-coding (NR_027242, exon 4 of 4)"	-7252	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr14.103988554.-	chr14	103988554	103988555	-	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	-642	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr16.58288630.+	chr16	58288630	58288631	+	0	NA	"intron (NM_014157, intron 3 of 8)"	AluY|SINE|Alu	4790	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chrX.11749437.-	chrX	11749437	11749438	-	0	NA	Intergenic	AluSx|SINE|Alu	26841	NM_078629	10943	Hs.655288	NM_001193270	ENSG00000005302	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
chr11.16894167.-	chr11	16894167	16894168	-	0	NA	"intron (NM_175058, intron 3 of 22)"	AluJo|SINE|Alu	-134019	NM_014267	10944	Hs.645792	NM_001142705		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
chr10.14719522.-	chr10	14719522	14719523	-	0	NA	"intron (NM_031453, intron 1 of 4)"	AluY|SINE|Alu	-97374	NM_031453	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45	"family with sequence similarity 107, member B"	protein-coding
chr6.46742419.-	chr6	46742419	46742420	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18675	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr2.101214308.-	chr2	101214308	101214309	-	0	NA	Intergenic	AluY|SINE|Alu	-34890	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr4.513528.+	chr4	513528	513529	+	0	NA	"intron (NM_001127178, intron 6 of 12)"	"intron (NM_001127178, intron 6 of 12)"	20539	NM_001127178	54872	Hs.7099	NM_001127178	ENSG00000174227	PIGG	GPI7|LAS21|PRO4405|RLGS1930	"phosphatidylinositol glycan anchor biosynthesis, class G"	protein-coding
chr1.236252186.-	chr1	236252186	236252187	-	0	NA	Intergenic	AluY|SINE|Alu	23705	NM_002508	4811	Hs.356624	NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
chr18.38415918.-	chr18	38415918	38415919	-	0	NA	Intergenic	AluY|SINE|Alu	-684643	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr1.28003917.-	chr1	28003917	28003918	-	0	NA	Intergenic	AluY|SINE|Alu	5193	NM_002038	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr11.133763872.+	chr11	133763872	133763873	+	0	NA	Intergenic	AluY|SINE|Alu	4604	NR_039846	100616119		NR_039846	ENSG00000264919	MIR4697	-	microRNA 4697	miscRNA
chr1.183892704.-	chr1	183892704	183892705	-	0	NA	"intron (NM_015149, intron 18 of 18)"	MIRc|SINE|MIR	-114159	NM_015101	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chr2.136403848.+	chr2	136403848	136403849	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19119	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr3.164119668.+	chr3	164119668	164119669	+	0	NA	Intergenic	LTR12C|LTR|ERV1	676615	NM_001041	6476	Hs.429596	NM_001041	ENSG00000090402	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
chr2.209271719.-	chr2	209271719	209271720	-	0	NA	"5' UTR (NM_005048, exon 1 of 13)"	"5' UTR (NM_005048, exon 1 of 13)"	-164	NM_005048	5746	Hs.570296	NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
chr3.29288124.-	chr3	29288124	29288125	-	0	NA	Intergenic	AluY|SINE|Alu	34679	NM_014483	27303	Hs.221436	NM_001003792	ENSG00000144642	RBMS3	-	"RNA binding motif, single stranded interacting protein 3"	protein-coding
chr11.62418769.-	chr11	62418769	62418770	-	0	NA	"intron (NM_030628, intron 1 of 1)"	AluY|SINE|Alu	-2005	NM_030628	80789	Hs.458390	NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
chr3.183052346.-	chr3	183052346	183052347	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81314	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr4.8912176.-	chr4	8912176	8912177	-	0	NA	Intergenic	Intergenic	38633	NM_018942	3166	Hs.104134	NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
chr2.241154380.+	chr2	241154380	241154381	+	0	NA	Intergenic	Intergenic	-74307	NM_148961	150677	Hs.148586	NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
chr5.85535674.-	chr5	85535674	85535675	-	0	NA	Intergenic	AluY|SINE|Alu	42588	NR_003719	285622	Hs.449272	NR_003719		NBPF22P	-	"neuroblastoma breakpoint family, member 22, pseudogene"	pseudo
chr16.2835400.+	chr16	2835400	2835401	+	0	NA	"exon (NM_152891, exon 4 of 6)"	"exon (NM_152891, exon 4 of 6)"	1308	NM_152891	260429	Hs.280658	NM_152891	ENSG00000103355	PRSS33	EOS	"protease, serine, 33"	protein-coding
chr19.38747032.+	chr19	38747032	38747033	+	0	NA	"5' UTR (NM_033256, exon 1 of 4)"	"5' UTR (NM_033256, exon 1 of 4)"	199	NM_033256	94274	Hs.631569	NM_001243947	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	"protein phosphatase 1, regulatory (inhibitor) subunit 14A"	protein-coding
chr10.134551966.+	chr10	134551966	134551967	+	0	NA	"intron (NM_005539, intron 9 of 15)"	"intron (NM_005539, intron 9 of 15)"	47571	NM_177400	84504	Hs.134013	NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
chr3.64757374.+	chr3	64757374	64757375	+	0	NA	"intron (NR_030317, intron 1 of 3)"	AluSz|SINE|Alu	51691	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	miscRNA
chr12.133115260.+	chr12	133115260	133115261	+	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	48103	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr15.28342410.-	chr15	28342410	28342411	-	0	NA	"intron (NM_000275, intron 1 of 23)"	CpG	-2048	NM_000275	4948	Hs.654411	NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
chr2.202898658.-	chr2	202898658	202898659	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	652	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr3.28951261.-	chr3	28951261	28951262	-	0	NA	Intergenic	AluY|SINE|Alu	-334492	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr13.65308135.-	chr13	65308135	65308136	-	0	NA	Intergenic	AluSc8|SINE|Alu	-996567	NR_002171	283491	Hs.694575	NR_002171		OR7E156P	-	"olfactory receptor, family 7, subfamily E, member 156 pseudogene"	pseudo
chrX.39680342.-	chrX	39680342	39680343	-	0	NA	Intergenic	CpG	-276377	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.1871381.+	chr19	1871381	1871382	+	0	NA	Intergenic	Intergenic	-7817	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr8.30891387.+	chr8	30891387	30891388	+	0	NA	promoter-TSS (NM_001015508)	promoter-TSS (NM_001015508)	-156	NM_001015508	29942	Hs.373778	NM_001015508	ENSG00000172733	PURG	PURG-A|PURG-B	purine-rich element binding protein G	protein-coding
chr16.49498960.-	chr16	49498960	49498961	-	0	NA	Intergenic	CpG	-91152	NM_144602	123970	Hs.125875	NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
chr7.157414458.+	chr7	157414458	157414459	+	0	NA	"intron (NM_130842, intron 13 of 21)"	"intron (NM_130842, intron 13 of 21)"	-47344	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr12.26964545.+	chr12	26964545	26964546	+	0	NA	"intron (NM_002223, intron 1 of 56)"	AluYf4|SINE|Alu	21586	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	IP3R2	"inositol 1,4,5-trisphosphate receptor, type 2"	protein-coding
chr1.84995540.-	chr1	84995540	84995541	-	0	NA	Intergenic	Intergenic	23278	NM_005274	2787	Hs.645427	NM_005274	ENSG00000174021	GNG5	-	"guanine nucleotide binding protein (G protein), gamma 5"	protein-coding
chr2.183903178.+	chr2	183903178	183903179	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	51	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr9.133814796.+	chr9	133814796	133814797	+	0	NA	promoter-TSS (NM_001145106)	promoter-TSS (NM_001145106)	-341	NM_001145106	84929	Hs.133205	NM_001145106	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
chr8.143695493.+	chr8	143695493	143695494	+	0	NA	"exon (NM_015193, exon 1 of 3)"	"exon (NM_015193, exon 1 of 3)"	340	NM_015193	23237	Hs.743662	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
chr9.11197058.-	chr9	11197058	11197059	-	0	NA	Intergenic	LTR12C|LTR|ERV1	584335	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr8.60407765.+	chr8	60407765	60407766	+	0	NA	Intergenic	L1PA7|LINE|L1	-375998	NM_014729	9760	Hs.634856	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection-associated high mobility group box	protein-coding
chrX.99617549.-	chrX	99617549	99617550	-	0	NA	"intron (NM_020766, intron 2 of 4)"	AluY|SINE|Alu	-47722	NM_020766	57526	Hs.4993	NM_001105243	ENSG00000165194	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
chr12.49035542.+	chr12	49035542	49035543	+	0	NA	Intergenic	SVA_A|Other|Other	12759	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr9.83293425.+	chr9	83293425	83293426	+	0	NA	Intergenic	AluSc|SINE|Alu	1010171	NM_005077	7088	Hs.689805	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	"transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)"	protein-coding
chr7.1286192.+	chr7	1286192	1286193	+	0	NA	Intergenic	CpG	13538	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr1.80177684.-	chr1	80177684	80177685	-	0	NA	Intergenic	AluSx|SINE|Alu	705189	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chrX.81762805.+	chrX	81762805	81762806	+	0	NA	Intergenic	AluY|SINE|Alu	-1000464	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr16.29870536.+	chr16	29870536	29870537	+	0	NA	"exon (NM_006319, exon 6 of 6)"	"exon (NM_006319, exon 6 of 6)"	4042	NM_006319	10423	Hs.731127	NM_145752	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
chr7.64198985.+	chr7	64198985	64198986	+	0	NA	Intergenic	SVA_D|Other|Other	-55781	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr7.100044641.+	chr7	100044641	100044642	+	0	NA	Intergenic	AluY|SINE|Alu	-10547	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr7.56143800.+	chr7	56143800	56143801	+	0	NA	"intron (NM_015411, intron 5 of 8)"	AluY|SINE|Alu	11883	NM_001042470	25870	Hs.279696	NM_001042469	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
chr16.8974141.-	chr16	8974141	8974142	-	0	NA	Intergenic	Intergenic	11278	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr22.30781359.+	chr22	30781359	30781360	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1943	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr12.132389002.+	chr12	132389002	132389003	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9723	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr8.126398083.-	chr8	126398083	126398084	-	0	NA	Intergenic	Intergenic	44480	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG2|SKIP1|TRB1	tribbles homolog 1 (Drosophila)	protein-coding
chr19.3068359.+	chr19	3068359	3068360	+	0	NA	Intergenic	Intergenic	-5395	NM_198969	166	Hs.515053	NM_001130	ENSG00000104964	AES	AES-1|AES-2|ESP1|GRG|GRG5|TLE5	amino-terminal enhancer of split	protein-coding
chr4.8913711.-	chr4	8913711	8913712	-	0	NA	Intergenic	Intergenic	37766	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
chr5.69056919.-	chr5	69056919	69056920	-	0	NA	Intergenic	AluYa5|SINE|Alu	50647	NR_027386	653188	Hs.654588	NR_027386	ENSG00000253203	GUSBP3	-	"glucuronidase, beta pseudogene 3"	pseudo
chr15.91599306.+	chr15	91599306	91599307	+	0	NA	Intergenic	Intergenic	-33473	NM_018668	26276	Hs.459366	NM_018668	ENSG00000184056	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
chr2.136760856.-	chr2	136760856	136760857	-	0	NA	Intergenic	AluSq2|SINE|Alu	17634	NM_001349	1615	Hs.503787	NM_001349	ENSG00000115866	DARS	-	aspartyl-tRNA synthetase	protein-coding
chr22.50871761.-	chr22	50871761	50871762	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41703	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr8.100115788.+	chr8	100115788	100115789	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90294	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr17.8061025.+	chr17	8061025	8061026	+	0	NA	Intergenic	AluY|SINE|Alu	5268	NM_014232	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
chrX.81762773.+	chrX	81762773	81762774	+	0	NA	Intergenic	AluY|SINE|Alu	-1000496	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chr4.42658135.-	chr4	42658135	42658136	-	0	NA	"intron (NM_006095, intron 1 of 36)"	"intron (NM_006095, intron 1 of 36)"	-987	NM_001105529	10396	Hs.435052	NM_001105529	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1"	protein-coding
chr18.55621040.+	chr18	55621040	55621041	+	0	NA	Intergenic	AluSc8|SINE|Alu	-90570	NM_015277	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr2.97168915.+	chr2	97168915	97168916	+	0	NA	"intron (NR_026875, intron 1 of 3)"	"intron (NR_026875, intron 1 of 3)"	4931	NR_026875	93082	Hs.149219	NR_026875	ENSG00000163121	NEURL3	LINCR	neuralized homolog 3 (Drosophila) pseudogene	pseudo
chr12.133366759.+	chr12	133366759	133366760	+	0	NA	"intron (NM_001172557, intron 12 of 15)"	AluY|SINE|Alu	-28308	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr9.131293117.-	chr9	131293117	131293118	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21720	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr20.45571523.+	chr20	45571523	45571524	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48260	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr7.128142014.+	chr7	128142014	128142015	+	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	25231	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chr19.35418192.-	chr19	35418192	35418193	-	0	NA	"intron (NM_001099438, intron 1 of 4)"	CpG	-385	NM_194325	90075	Hs.657402	NM_001099437	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
chr16.70133240.+	chr16	70133240	70133241	+	0	NA	Intergenic	AluY|SINE|Alu	-14289	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr19.56915454.+	chr19	56915454	56915455	+	0	NA	promoter-TSS (NM_152478)	promoter-TSS (NM_152478)	71	NM_001159860	147949	Hs.743482	NM_001159860	ENSG00000198440	ZNF583	-	zinc finger protein 583	protein-coding
chr14.84437105.+	chr14	84437105	84437106	+	0	NA	Intergenic	AluY|SINE|Alu	-1559383	NM_013231	23768	Hs.744139	NM_013231	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chr2.174289336.+	chr2	174289336	174289337	+	0	NA	Intergenic	AluSx|SINE|Alu	69775	NM_145810	83879	Hs.470654	NM_031942	ENSG00000144354	CDCA7	JPO1	cell division cycle associated 7	protein-coding
chr19.55681163.-	chr19	55681163	55681164	-	0	NA	Intergenic	AluSp|SINE|Alu	3073	NM_001256716	352909	Hs.351582	NM_001256714	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	"dynein, axonemal, assembly factor 3"	protein-coding
chr2.175518325.-	chr2	175518325	175518326	-	0	NA	"intron (NM_001077269, intron 1 of 7)"	AluY|SINE|Alu	19018	NM_003387	7456	Hs.128067	NM_001077269	ENSG00000115935	WIPF1	PRPL-2|WASPIP|WIP	"WAS/WASL interacting protein family, member 1"	protein-coding
chr17.4691594.-	chr17	4691594	4691595	-	0	NA	promoter-TSS (NM_001014985)	promoter-TSS (NM_001014985)	660	NM_001014985	388323	Hs.131035	NM_001014985	ENSG00000182327	GLTPD2	-	glycolipid transfer protein domain containing 2	protein-coding
chr8.97172766.-	chr8	97172766	97172767	-	0	NA	"exon (NM_001001557, exon 1 of 2)"	"exon (NM_001001557, exon 1 of 2)"	-254	NM_001001557	392255	Hs.492277	NM_001001557	ENSG00000156466	GDF6	BMP13|CDMP2|KFM|KFS|KFS1|KFSL|MCOP4|MCOPCB6|SCDO4|SGM1	growth differentiation factor 6	protein-coding
chr1.201140002.-	chr1	201140002	201140003	-	0	NA	Intergenic	CpG	16370	NM_016456	252839	Hs.181444	NM_016456	ENSG00000116857	TMEM9	TMEM9A	transmembrane protein 9	protein-coding
chr15.35374145.+	chr15	35374145	35374146	+	0	NA	Intergenic	SVA_A|Other|Other	-93648	NM_014106	54989	Hs.5327	NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
chr12.9892349.+	chr12	9892349	9892350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6454	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr3.80581463.+	chr3	80581463	80581464	+	0	NA	Intergenic	AluSg|SINE|Alu	-764404	NM_002941	6091	Hs.744218	NM_001145845	ENSG00000169855	ROBO1	DUTT1|SAX3	"roundabout, axon guidance receptor, homolog 1 (Drosophila)"	protein-coding
chr18.3018929.-	chr18	3018929	3018930	-	0	NA	Intergenic	AluY|SINE|Alu	6984	NM_014646	9663	Hs.132342	NM_014646	ENSG00000101577	LPIN2	-	lipin 2	protein-coding
chr18.55445661.+	chr18	55445661	55445662	+	0	NA	"intron (NM_005603, intron 1 of 27)"	AluY|SINE|Alu	24666	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	"ATPase, aminophospholipid transporter, class I, type 8B, member 1"	protein-coding
chr10.14851289.+	chr10	14851289	14851290	+	0	NA	Intergenic	AluY|SINE|Alu	28694	NM_001029954	441549	Hs.559067	NM_001029954		CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
chr6.3761454.-	chr6	3761454	3761455	-	0	NA	Intergenic	LTR12D|LTR|ERV1	9208	NM_183373	221749	Hs.484500	NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
chr7.2716296.-	chr7	2716296	2716297	-	0	NA	Intergenic	Intergenic	2867	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr2.47798059.-	chr2	47798059	47798060	-	0	NA	promoter-TSS (NM_022055)	promoter-TSS (NM_022055)	589	NM_022055	56660	Hs.591586	NM_022055		KCNK12	K2p12.1|THIK-2|THIK2	"potassium channel, subfamily K, member 12"	protein-coding
chr5.113089570.+	chr5	113089570	113089571	+	0	NA	Intergenic	AluY|SINE|Alu	240179	NM_022828	64848	Hs.231942	NM_022828	ENSG00000047188	YTHDC2	CAHL	YTH domain containing 2	protein-coding
chr7.21160421.-	chr7	21160421	21160422	-	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	-293504	NR_026673	222901	Hs.735774	NR_026673	ENSG00000219451	RPL23P8	RPL23_4_790	ribosomal protein L23 pseudogene 8	pseudo
chr19.42516601.+	chr19	42516601	42516602	+	0	NA	"intron (NM_002088, intron 14 of 18)"	AluSx3|SINE|Alu	-18173	NM_152296	478	Hs.515427	NM_001256213	ENSG00000105409	ATP1A3	AHC2|DYT12|RDP	"ATPase, Na+/K+ transporting, alpha 3 polypeptide"	protein-coding
chr20.39978550.+	chr20	39978550	39978551	+	0	NA	"intron (NM_022896, intron 6 of 19)"	"intron (NM_022896, intron 6 of 19)"	8990	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr8.29884832.+	chr8	29884832	29884833	+	0	NA	Intergenic	CpG	55817	NM_016127	51669	Hs.521487	NM_016127	ENSG00000133872	TMEM66	FOAP-7|SARAF|XTP3	transmembrane protein 66	protein-coding
chr7.100291686.+	chr7	100291686	100291687	+	0	NA	Intergenic	CpG	-4816	NM_022574	64599	Hs.414396	NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
chr17.74169107.+	chr17	74169107	74169108	+	0	NA	"intron (NM_052916, intron 3 of 18)"	AluY|SINE|Alu	-31727	NM_001454	2302	Hs.651204	NM_001454	ENSG00000129654	FOXJ1	FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
chr19.2427753.+	chr19	2427753	2427754	+	0	NA	TTS (NM_032737)	TTS (NM_032737)	122	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr10.98945382.-	chr10	98945382	98945383	-	0	NA	"exon (NM_003061, exon 1 of 37)"	"exon (NM_003061, exon 1 of 37)"	-301	NM_003061	6585	Hs.632082	NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit homolog 1 (Drosophila)	protein-coding
chr17.78397617.-	chr17	78397617	78397618	-	0	NA	"intron (NM_173627, intron 5 of 9)"	"intron (NM_173627, intron 5 of 9)"	-4399	NR_039883	100616359		NR_039883		MIR4730	-	microRNA 4730	miscRNA
chr16.74649845.+	chr16	74649845	74649846	+	0	NA	Intergenic	AluSc5|SINE|Alu	-8803	NR_027265	2734	Hs.109731	NM_001145666		GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
chr2.10130529.+	chr2	10130529	10130530	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSx1|SINE|Alu	38737	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr5.170687189.-	chr5	170687189	170687190	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49099	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr1.241050663.-	chr1	241050663	241050664	-	0	NA	"intron (NM_002924, intron 6 of 17)"	AluY|SINE|Alu	244909	NR_036069	100422856		NR_036069	ENSG00000265831	MIR3123	-	microRNA 3123	miscRNA
chr1.12090085.-	chr1	12090085	12090086	-	0	NA	"exon (NM_021933, exon 8 of 10)"	"exon (NM_021933, exon 8 of 10)"	-10786	NM_021933	60672	Hs.8595	NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
chr2.155617302.+	chr2	155617302	155617303	+	0	NA	"intron (NM_002239, intron 2 of 2)"	AluY|SINE|Alu	62209	NM_001260509	3760	Hs.591606	NM_001260508	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	"potassium inwardly-rectifying channel, subfamily J, member 3"	protein-coding
chr1.241050658.-	chr1	241050658	241050659	-	0	NA	"intron (NM_002924, intron 6 of 17)"	AluY|SINE|Alu	244914	NR_036069	100422856		NR_036069	ENSG00000265831	MIR3123	-	microRNA 3123	miscRNA
chr8.145690541.+	chr8	145690541	145690542	+	0	NA	promoter-TSS (NM_138496)	promoter-TSS (NM_138496)	-123	NM_138496	50626	Hs.459379	NM_001129888	ENSG00000187954	CYHR1	CHRP	cysteine/histidine-rich 1	protein-coding
chr14.90524030.+	chr14	90524030	90524031	+	0	NA	Intergenic	AluY|SINE|Alu	-4078	NM_022054	56659	Hs.510191	NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	"potassium channel, subfamily K, member 13"	protein-coding
chr11.66884083.+	chr11	66884083	66884084	+	0	NA	Intergenic	AluSx|SINE|Alu	-2657	NM_012308	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr19.589004.-	chr19	589004	589005	-	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	889	NM_001194	610	Hs.124161	NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
chr13.56400626.-	chr13	56400626	56400627	-	0	NA	Intergenic	AluY|SINE|Alu	-652037	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chrX.31406408.+	chrX	31406408	31406409	+	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	120007	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr13.112722083.-	chr13	112722083	112722084	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-170	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chrX.153657073.-	chrX	153657073	153657074	-	0	NA	promoter-TSS (NM_001183)	promoter-TSS (NM_001183)	-95	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr3.177129367.-	chr3	177129367	177129368	-	0	NA	Intergenic	AluSx1|SINE|Alu	30342	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	miscRNA
chr1.149646780.-	chr1	149646780	149646781	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70327	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr6.168352163.+	chr6	168352163	168352164	+	0	NA	"exon (NM_001207008, exon 28 of 32)"	"exon (NM_001207008, exon 28 of 32)"	25456	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr17.73439479.+	chr17	73439479	73439480	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13185	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr20.3079578.+	chr20	3079578	3079579	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7979	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	miscRNA
chr8.123636976.-	chr8	123636976	123636977	-	0	NA	Intergenic	AluSx|SINE|Alu	156925	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr9.120507385.-	chr9	120507385	120507386	-	0	NA	Intergenic	CpG	-40932	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr6.2221720.+	chr6	2221720	2221721	+	0	NA	"intron (NM_001500, intron 1 of 10)"	AluY|SINE|Alu	24148	NM_001500	2762	Hs.660919	NM_001253846	ENSG00000112699	GMDS	GMD|SDR3E1	"GDP-mannose 4,6-dehydratase"	protein-coding
chr7.74447114.-	chr7	74447114	74447115	-	0	NA	Intergenic	AluSx1|SINE|Alu	-42585	NM_030798	81554	Hs.723684	NM_030798	ENSG00000174374	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
chr15.92290133.-	chr15	92290133	92290134	-	0	NA	Intergenic	AluY|SINE|Alu	106805	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chrM.801.+	chrM	801	802	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr1.218505141.-	chr1	218505141	218505142	-	0	NA	"3' UTR (NM_016052, exon 5 of 5)"	"3' UTR (NM_016052, exon 5 of 5)"	13535	NM_003238	7042	Hs.133379	NM_001135599	ENSG00000092969	TGFB2	LDS4|TGF-beta2	"transforming growth factor, beta 2"	protein-coding
chr12.94945457.+	chr12	94945457	94945458	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10108	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr19.14192153.+	chr19	14192153	14192154	+	0	NA	TTS (NM_001277378)	TTS (NM_001277378)	4454	NM_001277378	646457	Hs.569971	XM_003403704	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
chr6.46742405.-	chr6	46742405	46742406	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18689	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr9.21971246.-	chr9	21971246	21971247	-	0	NA	"intron (NM_058195, intron 1 of 2)"	"intron (NM_058195, intron 1 of 2)"	-3580	NM_058197	1029	Hs.512599	NM_000077	ENSG00000147889	CDKN2A	ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin-dependent kinase inhibitor 2A	protein-coding
chr22.38498779.+	chr22	38498779	38498780	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7897	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr9.66458390.+	chr9	66458390	66458391	+	0	NA	Intergenic	CpG	-35879	NR_024496	442421	Hs.744644	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
chr22.24621479.-	chr22	24621479	24621480	-	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	-19631	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr17.5148705.-	chr17	5148705	5148706	-	0	NA	Intergenic	AluSq|SINE|Alu	10550	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr12.126371191.+	chr12	126371191	126371192	+	0	NA	Intergenic	AluY|SINE|Alu	96729	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LOC400084	-	uncharacterized LOC400084	miscRNA
chr3.126373376.+	chr3	126373376	126373377	+	0	NA	"intron (NM_052883, intron 1 of 15)"	"intron (NM_052883, intron 1 of 15)"	591	NM_001173513	114112	Hs.477475	NM_001173513	ENSG00000197763	TXNRD3	TGR|TR2|TRXR3	thioredoxin reductase 3	protein-coding
chr10.135104678.-	chr10	135104678	135104679	-	0	NA	"intron (NM_006659, intron 8 of 17)"	"intron (NM_006659, intron 8 of 17)"	14271	NM_001109	101	Hs.501574	NM_001109	ENSG00000151651	ADAM8	CD156|MS2	ADAM metallopeptidase domain 8	protein-coding
chr22.38166052.-	chr22	38166052	38166053	-	0	NA	"intron (NM_001039141, intron 21 of 23)"	AluSx|SINE|Alu	-23811	NM_007032	11078	Hs.533030	NM_001039141	ENSG00000100106	TRIOBP	DFNB28|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
chr3.20353466.-	chr3	20353466	20353467	-	0	NA	Intergenic	AluYk4|SINE|Alu	125742	NM_001199256	151648	Hs.105153	NM_001012409	ENSG00000129810	SGOL1	NY-BR-85|SGO|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding
chr19.15426523.+	chr19	15426523	15426524	+	0	NA	Intergenic	AluSx1|SINE|Alu	-35261	NM_058243	23476	Hs.187763	NM_014299	ENSG00000141867	BRD4	CAP|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
chr17.57884705.-	chr17	57884705	57884706	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	33922	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr21.43025974.+	chr21	43025974	43025975	+	0	NA	Intergenic	Intergenic	-73488	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr8.3500957.+	chr8	3500957	3500958	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351371	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr22.27947635.+	chr22	27947635	27947636	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	249851	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
chr6.167690349.-	chr6	167690349	167690350	-	0	NA	Intergenic	Intergenic	14454	NM_001143947	54346	Hs.567508	NM_001143947	ENSG00000112494	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A (C. elegans)	protein-coding
chr8.26241068.-	chr8	26241068	26241069	-	0	NA	"intron (NM_004331, intron 1 of 5)"	(CGGGG)n|Simple_repeat|Simple_repeat	-545	NM_004331	665	Hs.131226	NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
chr16.48278412.-	chr16	48278412	48278413	-	0	NA	"exon (NM_031490, exon 1 of 15)"	"exon (NM_031490, exon 1 of 15)"	-201	NM_031490	83752	Hs.731827	NM_031490		LONP2	LONP|LONPL	"lon peptidase 2, peroxisomal"	protein-coding
chr13.23713118.+	chr13	23713118	23713119	+	0	NA	Intergenic	AluY|SINE|Alu	-41942	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr1.240926257.+	chr1	240926257	240926258	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-150795	NM_022469	64388	Hs.98206	NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC	"gremlin 2, DAN family BMP antagonist"	protein-coding
chr8.95668705.+	chr8	95668705	95668706	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15341	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr17.7246120.+	chr17	7246120	7246121	+	0	NA	"intron (NM_014716, intron 5 of 21)"	AluSx1|SINE|Alu	6272	NM_014716	9744	Hs.337242	NM_014716	ENSG00000072818	ACAP1	CENTB1	"ArfGAP with coiled-coil, ankyrin repeat and PH domains 1"	protein-coding
chr16.8973993.+	chr16	8973993	8973994	+	0	NA	Intergenic	AluY|SINE|Alu	-11130	NM_014316	23589	Hs.632184	NM_001042476	ENSG00000153048	CARHSP1	CRHSP-24|CSDC1	"calcium regulated heat stable protein 1, 24kDa"	protein-coding
chr7.2916560.+	chr7	2916560	2916561	+	0	NA	Intergenic	Intergenic	-32601	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr1.90461025.-	chr1	90461025	90461026	-	0	NA	promoter-TSS (NR_002830)	promoter-TSS (NR_002830)	-347	NM_182976	284695	Hs.306221	NM_181781	ENSG00000162664	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
chr8.42888210.-	chr8	42888210	42888211	-	0	NA	Intergenic	SVA_D|Other|Other	23232	NR_033698	2339	Hs.370312	NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	"farnesyltransferase, CAAX box, alpha"	protein-coding
chr17.79427796.+	chr17	79427796	79427797	+	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	-9582	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr8.7414165.+	chr8	7414165	7414166	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2461	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chrX.86721038.+	chrX	86721038	86721039	+	0	NA	Intergenic	SVA_C|Other|Other	-51677	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr19.3220531.-	chr19	3220531	3220532	-	0	NA	Intergenic	AluSz|SINE|Alu	4170	NM_021938	60680	Hs.655747	NM_001172673	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	"CUGBP, Elav-like family member 5"	protein-coding
chr2.136403859.+	chr2	136403859	136403860	+	0	NA	"intron (NM_015361, intron 16 of 25)"	AluY|SINE|Alu	-19108	NR_029672	406915		NR_029672		MIR128-1	MIR128A|MIRN128-1|MIRN128A	microRNA 128-1	miscRNA
chr2.10424723.+	chr2	10424723	10424724	+	0	NA	Intergenic	Intergenic	-18307	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chr8.142397027.+	chr8	142397027	142397028	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-19662	NM_005293	2843	Hs.188859	NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
chr20.39037340.-	chr20	39037340	39037341	-	0	NA	Intergenic	AluYk4|SINE|Alu	-280536	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)	protein-coding
chr16.89034181.+	chr16	89034181	89034182	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9323	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr2.130902795.-	chr2	130902795	130902796	-	0	NA	promoter-TSS (NM_001258307)	promoter-TSS (NM_001258307)	88	NM_207310	91409	Hs.29383	NM_001258307	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
chr11.108417662.-	chr11	108417662	108417663	-	0	NA	"intron (NM_015065, intron 1 of 5)"	AluSg|SINE|Alu	-46712	NM_015065	23086	Hs.28540	NM_001144763	ENSG00000110723	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
chr11.18743341.-	chr11	18743341	18743342	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4436	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chrM.6534.-	chrM	6534	6535	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr3.129081668.-	chr3	129081668	129081669	-	0	NA	Intergenic	SVA_D|Other|Other	-34523	NR_002992	677797	Hs.711399	NR_002992	ENSG00000207088	SNORA7B	ACA7B	"small nucleolar RNA, H/ACA box 7B"	snoRNA
chr1.109995454.+	chr1	109995454	109995455	+	0	NA	Intergenic	AluY|SINE|Alu	-13646	NM_001040709	284612	Hs.528366	NM_001006603	ENSG00000143028	SYPL2	MG29	synaptophysin-like 2	protein-coding
chr6.160426441.-	chr6	160426441	160426442	-	0	NA	"non-coding (NR_047514, exon 1 of 1)"	"non-coding (NR_047514, exon 1 of 1)"	-2255	NR_047514	100271873	Hs.742166	NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	miscRNA
chr16.88779067.-	chr16	88779067	88779068	-	0	NA	"exon (NM_001012762, exon 7 of 14)"	"exon (NM_001012762, exon 7 of 14)"	-3678	NR_039873	100616167		NR_039873		MIR4722	-	microRNA 4722	miscRNA
chr19.46987848.-	chr19	46987848	46987849	-	0	NA	"intron (NM_001205281, intron 3 of 3)"	AluSx|SINE|Alu	-11321	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
chr7.95178701.+	chr7	95178701	95178702	+	0	NA	Intergenic	AluY|SINE|Alu	47224	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr6.90062619.-	chr6	90062619	90062620	-	0	NA	promoter-TSS (NM_016021)	promoter-TSS (NM_016021)	0	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p	"ubiquitin-conjugating enzyme E2, J1"	protein-coding
chr1.32801298.+	chr1	32801298	32801299	+	0	NA	"intron (NR_052852, intron 1 of 1)"	CpG	542	NM_023009	65108	Hs.75061	NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS-like 1	protein-coding
chr22.42027279.+	chr22	42027279	42027280	+	0	NA	"intron (NM_001469, intron 3 of 12)"	SVA_D|Other|Other	9984	NM_001469	2547	Hs.292493	NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding
chr17.3806753.-	chr17	3806753	3806754	-	0	NA	"intron (NM_002558, intron 6 of 11)"	"intron (NM_002558, intron 6 of 11)"	10416	NM_032294	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	"calcium/calmodulin-dependent protein kinase kinase 1, alpha"	protein-coding
chr17.1226117.-	chr17	1226117	1226118	-	0	NA	Intergenic	AluSx|SINE|Alu	-43160	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr7.32427410.-	chr7	32427410	32427411	-	0	NA	Intergenic	SVA_E|Other|Other	-70696	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
chr21.31598707.-	chr21	31598707	31598708	-	0	NA	Intergenic	AluSx4|SINE|Alu	10238	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr15.68631837.-	chr15	68631837	68631838	-	0	NA	"intron (NM_001004439, intron 11 of 29)"	"intron (NM_001004439, intron 11 of 29)"	-61696	NM_015322	10116	Hs.362733	NM_015322		FEM1B	F1A-ALPHA|FIAA	fem-1 homolog b (C. elegans)	protein-coding
chr7.100719594.-	chr7	100719594	100719595	-	0	NA	Intergenic	Intergenic	9192	NM_030961	81844	Hs.521092	NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
chr2.109308547.+	chr2	109308547	109308548	+	0	NA	Intergenic	AluY|SINE|Alu	-27390	NM_006267	5903	Hs.715056	NM_006267	ENSG00000153201	RANBP2	ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
chr3.43816044.-	chr3	43816044	43816045	-	0	NA	Intergenic	AluYf4|SINE|Alu	-83669	NM_016006	51099	Hs.19385	NM_016006		ABHD5	CDS|CGI58|IECN2|NCIE2	abhydrolase domain containing 5	protein-coding
chr12.103866111.-	chr12	103866111	103866112	-	0	NA	"intron (NM_198521, intron 2 of 5)"	AluY|SINE|Alu	-23635	NM_198521	374470	Hs.534649	NM_001099336	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
chr12.132389075.+	chr12	132389075	132389076	+	0	NA	"intron (NM_003565, intron 3 of 27)"	"intron (NM_003565, intron 3 of 27)"	9796	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr13.72731958.+	chr13	72731958	72731959	+	0	NA	Intergenic	AluY|SINE|Alu	-290628	NM_004392	1602	Hs.129452	NM_004392	ENSG00000165659	DACH1	DACH	dachshund homolog 1 (Drosophila)	protein-coding
chr8.3501032.+	chr8	3501032	3501033	+	0	NA	"intron (NM_033225, intron 7 of 69)"	AluY|SINE|Alu	1351296	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr19.3551986.-	chr19	3551986	3551987	-	0	NA	"intron (NM_021731, intron 1 of 10)"	L2b|LINE|L2	-5585	NM_174983	126321	Hs.656901	NM_001042680	ENSG00000161091	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
chr1.2827137.-	chr1	2827137	2827138	-	0	NA	Intergenic	Intergenic	110909	NM_080431	140625	Hs.236635	NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin-related protein T2	protein-coding
chr1.227982942.+	chr1	227982942	227982943	+	0	NA	Intergenic	Intergenic	-20476	NM_183062	339501	Hs.97604	NM_183062	ENSG00000185888	PRSS38	MPN2	"protease, serine, 38"	protein-coding
chr4.91281362.-	chr4	91281362	91281363	-	0	NA	"intron (NM_207491, intron 3 of 7)"	AluSx3|SINE|Alu	-125180	NM_207491	401145	Hs.654735	NM_001145065	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
chr1.183670889.-	chr1	183670889	183670890	-	0	NA	"intron (NM_015149, intron 1 of 18)"	AluSg|SINE|Alu	48441	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chr9.91605806.+	chr9	91605806	91605807	+	0	NA	promoter-TSS (NM_001142413)	promoter-TSS (NM_001142413)	28	NM_001142413	286223	Hs.585118	NM_001001938	ENSG00000186354	C9orf47	C9orf108|bA791O21.3	chromosome 9 open reading frame 47	protein-coding
chr16.68233535.+	chr16	68233535	68233536	+	0	NA	"intron (NM_173165, intron 9 of 9)"	AluY|SINE|Alu	36601	NM_024939	80004	Hs.592053	NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
chr3.195498024.-	chr3	195498024	195498025	-	0	NA	"intron (NM_138297, intron 3 of 22)"	"intron (NM_138297, intron 3 of 22)"	-40820	NM_004532	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	"mucin 4, cell surface associated"	protein-coding
chr1.78837746.-	chr1	78837746	78837747	-	0	NA	Intergenic	AluSx|SINE|Alu	118982	NM_001039585	5737	Hs.654365	NM_000959	ENSG00000122420	PTGFR	FP	prostaglandin F receptor (FP)	protein-coding
chr13.25027196.+	chr13	25027196	25027197	+	0	NA	"intron (NM_006437, intron 23 of 33)"	AluSx1|SINE|Alu	59752	NM_006437	143	Hs.117825	NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	"poly (ADP-ribose) polymerase family, member 4"	protein-coding
chr1.28703556.-	chr1	28703556	28703557	-	0	NA	"intron (NM_001048183, intron 1 of 13)"	AluSq2|SINE|Alu	-7463	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	-	phosphatase and actin regulator 4	protein-coding
chr18.77627578.-	chr18	77627578	77627579	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3910	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr2.239047594.+	chr2	239047594	239047595	+	0	NA	"intron (NM_198582, intron 1 of 7)"	"intron (NM_198582, intron 1 of 7)"	231	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr9.98416459.-	chr9	98416459	98416460	-	0	NA	Intergenic	AluY|SINE|Alu	137212	NM_001083603	5727	Hs.494538	NM_000264	ENSG00000185920	PTCH1	BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11	patched 1	protein-coding
chr13.21644934.+	chr13	21644934	21644935	+	0	NA	Intergenic	AluSx|SINE|Alu	-9212	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr16.58567189.+	chr16	58567189	58567190	+	0	NA	"intron (NM_001265612, intron 40 of 48)"	AluY|SINE|Alu	15348	NR_002978	677827	Hs.688592	NR_002978		SNORA46	ACA46	"small nucleolar RNA, H/ACA box 46"	snoRNA
chr2.242750640.+	chr2	242750640	242750641	+	0	NA	"intron (NM_001167600, intron 1 of 3)"	"intron (NM_001167600, intron 1 of 3)"	480	NM_001167601	129807	Hs.551747	NM_001167599	ENSG00000204099	NEU4	-	sialidase 4	protein-coding
chr5.2860489.-	chr5	2860489	2860490	-	0	NA	Intergenic	Intergenic	-108227	NM_178569	153571	Hs.668017	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
chr8.123636959.-	chr8	123636959	123636960	-	0	NA	Intergenic	AluSx|SINE|Alu	156942	NM_014943	22882	Hs.743958	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
chr7.73523252.-	chr7	73523252	73523253	-	0	NA	"exon (NM_002314, exon 10 of 16)"	"exon (NM_002314, exon 10 of 16)"	-15766	NM_001204426	3984	Hs.647035	NM_001204426	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
chr12.123770844.-	chr12	123770844	123770845	-	0	NA	Intergenic	AluSq2|SINE|Alu	13981	NR_073007	8099	Hs.433201	NM_001270433	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin-dependent kinase 2 associated protein 1	protein-coding
chr4.5892156.-	chr4	5892156	5892157	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1841	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr11.118353968.-	chr11	118353968	118353969	-	0	NA	"intron (NM_001197104, intron 8 of 35)"	AluYf4|SINE|Alu	44242	NM_001080441	143941	Hs.653449	NM_001080441		TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
chr9.138065645.-	chr9	138065645	138065646	-	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	7810	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr22.49428513.-	chr22	49428513	49428514	-	0	NA	Intergenic	Intergenic	-165931	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr11.63286733.+	chr11	63286733	63286734	+	0	NA	"intron (NR_049833, intron 1 of 3)"	AluY|SINE|Alu	11274	NM_001142537	85329	Hs.502774	NM_001142535	ENSG00000133317	LGALS12	GAL12|GRIP1	"lectin, galactoside-binding, soluble, 12"	protein-coding
chr16.3109383.+	chr16	3109383	3109384	+	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	-5930	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr20.62657586.-	chr20	62657586	62657587	-	0	NA	"intron (NM_012469, intron 15 of 20)"	AluSp|SINE|Alu	8111	NR_027686	284739	Hs.97840	NM_207349	ENSG00000196421	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	miscRNA
chr1.194872513.+	chr1	194872513	194872514	+	0	NA	Intergenic	AluSx|SINE|Alu	1679098	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr5.86548471.+	chr5	86548471	86548472	+	0	NA	Intergenic	Intergenic	-15599	NM_002890	5921	Hs.664080	NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP	RAS p21 protein activator (GTPase activating protein) 1	protein-coding
chr15.65796587.+	chr15	65796587	65796588	+	0	NA	"intron (NM_017743, intron 3 of 17)"	AluSp|SINE|Alu	13022	NM_197960	54878	Hs.591106	NM_017743		DPP8	DP8|DPRP1|MSTP141	dipeptidyl-peptidase 8	protein-coding
chr12.106606588.+	chr12	106606588	106606589	+	0	NA	Intergenic	L1PA7|LINE|L1	35125	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr11.65495540.-	chr11	65495540	65495541	-	0	NA	Intergenic	Intergenic	7131	NM_032193	84153	Hs.718438	NM_032193	ENSG00000172922	RNASEH2C	AGS3|AYP1	"ribonuclease H2, subunit C"	protein-coding
chr9.16855705.-	chr9	16855705	16855706	-	0	NA	"intron (NM_017637, intron 1 of 6)"	AluY|SINE|Alu	-15081	NM_017637	54796	Hs.740070	NM_017637		BNC2	BSN2	basonuclin 2	protein-coding
chr8.86574394.+	chr8	86574394	86574395	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	348	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr10.59351217.+	chr10	59351217	59351218	+	0	NA	Intergenic	AluY|SINE|Alu	-286898	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr2.240402015.+	chr2	240402015	240402016	+	0	NA	Intergenic	Intergenic	-79372	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr19.644288.+	chr19	644288	644289	+	0	NA	TTS (NM_020637)	TTS (NM_020637)	4362	NM_020637	27006	Hs.248087	NM_020637		FGF22	-	fibroblast growth factor 22	protein-coding
chr12.72258449.-	chr12	72258449	72258450	-	0	NA	"intron (NM_001146214, intron 2 of 17)"	AluSg7|SINE|Alu	13686	NR_024072	729633	Hs.716256	NR_024072		MRS2P2	-	MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 2	pseudo
chr6.4780574.+	chr6	4780574	4780575	+	0	NA	"intron (NM_004824, intron 1 of 6)"	AluSz6|SINE|Alu	3894	NM_004824	9425	Hs.269092	NM_001143970	ENSG00000153046	CDYL	CDYL1	"chromodomain protein, Y-like"	protein-coding
chr16.68158318.+	chr16	68158318	68158319	+	0	NA	"intron (NM_004555, intron 2 of 10)"	"intron (NM_004555, intron 2 of 10)"	39049	NM_004555	4775	Hs.436585	NM_004555	ENSG00000072736	NFATC3	NFAT4|NFATX	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3"	protein-coding
chr19.49964864.+	chr19	49964864	49964865	+	0	NA	"intron (NM_001145396, intron 5 of 15)"	"intron (NM_001145396, intron 5 of 15)"	8391	NM_001145396	126133	Hs.719998	NM_001145396	ENSG00000161618	ALDH16A1	-	"aldehyde dehydrogenase 16 family, member A1"	protein-coding
chr1.21759033.+	chr1	21759033	21759034	+	0	NA	Intergenic	AluSx|SINE|Alu	-7550	NR_046176	84224	Hs.325422	NM_001256416	ENSG00000142794	NBPF3	AE2	"neuroblastoma breakpoint family, member 3"	protein-coding
chr15.100514186.-	chr15	100514186	100514187	-	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	167054	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr7.21370283.-	chr7	21370283	21370284	-	0	NA	Intergenic	MER52D|LTR|ERV1	97406	NM_003112	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
chr2.85627143.-	chr2	85627143	85627144	-	0	NA	"intron (NM_001256139, intron 5 of 9)"	AluSp|SINE|Alu	-10677	NM_001256140	822	Hs.516155	NM_001256139	ENSG00000042493	CAPG	AFCP|MCP	"capping protein (actin filament), gelsolin-like"	protein-coding
chr19.17585854.-	chr19	17585854	17585855	-	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	-4554	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr2.202898623.-	chr2	202898623	202898624	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	687	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr22.49969171.-	chr22	49969171	49969172	-	0	NA	Intergenic	Intergenic	-82019	NR_026997	348645	Hs.133159	NR_026997		C22orf34	-	chromosome 22 open reading frame 34	miscRNA
chr4.118368474.+	chr4	118368474	118368475	+	0	NA	Intergenic	AluY|SINE|Alu	-361738	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr17.57868965.-	chr17	57868965	57868966	-	0	NA	"intron (NM_030938, intron 7 of 11)"	AluSz|SINE|Alu	49662	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr4.39561483.+	chr4	39561483	39561484	+	0	NA	"intron (NM_174921, intron 3 of 4)"	AluJb|SINE|Alu	32024	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	miscRNA
chr7.5396272.+	chr7	5396272	5396273	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66905	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr7.45649953.-	chr7	45649953	45649954	-	0	NA	"intron (NM_021116, intron 2 of 19)"	"intron (NM_021116, intron 2 of 19)"	-35828	NM_021116	107	Hs.192215	NM_021116	ENSG00000164742	ADCY1	AC1	adenylate cyclase 1 (brain)	protein-coding
chrX.53125836.+	chrX	53125836	53125837	+	0	NA	Intergenic	AluJb|SINE|Alu	14294	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr21.47343972.-	chr21	47343972	47343973	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57691	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr20.33005280.+	chr20	33005280	33005281	+	0	NA	"intron (NM_001257137, intron 7 of 25)"	AluSq2|SINE|Alu	-48850	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr17.45897152.-	chr17	45897152	45897153	-	0	NA	"intron (NM_145798, intron 3 of 22)"	"intron (NM_145798, intron 3 of 22)"	-1995	NM_145798	114881	Hs.463320	NM_145798	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
chr5.137550364.+	chr5	137550364	137550365	+	0	NA	Intergenic	AluY|SINE|Alu	-1332	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr9.26387248.-	chr9	26387248	26387249	-	0	NA	Intergenic	AluY|SINE|Alu	-320575	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
chr8.1562651.+	chr8	1562651	1562652	+	0	NA	"intron (NM_004745, intron 3 of 11)"	"intron (NM_004745, intron 3 of 11)"	113119	NM_004745	9228	Hs.113287	NM_001277161	ENSG00000198010	DLGAP2	DAP2|SAPAP2	"discs, large (Drosophila) homolog-associated protein 2"	protein-coding
chr10.59351218.-	chr10	59351218	59351219	-	0	NA	Intergenic	AluY|SINE|Alu	286899	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr19.15718063.+	chr19	15718063	15718064	+	0	NA	Intergenic	AluY|SINE|Alu	-7966	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	"cytochrome P450, family 4, subfamily F, polypeptide 8"	protein-coding
chr8.141523797.-	chr8	141523797	141523798	-	0	NA	"intron (NR_040712, intron 1 of 2)"	AluY|SINE|Alu	-1716	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr2.237068285.-	chr2	237068285	237068286	-	0	NA	Intergenic	CpG	-8367	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr4.2829379.-	chr4	2829379	2829380	-	0	NA	"exon (NM_001122681, exon 7 of 13)"	"exon (NM_001122681, exon 7 of 13)"	-8838	NM_003023	6452	Hs.167679	NM_001122681	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
chr6.99282256.-	chr6	99282256	99282257	-	0	NA	promoter-TSS (NM_005604)	promoter-TSS (NM_005604)	324	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
chr10.81319169.+	chr10	81319169	81319170	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	994	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr10.59351277.+	chr10	59351277	59351278	+	0	NA	Intergenic	AluY|SINE|Alu	-286958	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr15.92290007.-	chr15	92290007	92290008	-	0	NA	Intergenic	AluY|SINE|Alu	106931	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr19.11043346.+	chr19	11043346	11043347	+	0	NA	Intergenic	AluSg4|SINE|Alu	3922	NM_138358	90580	Hs.164026	NM_138358	ENSG00000142444	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
chr8.78788187.-	chr8	78788187	78788188	-	0	NA	Intergenic	AluY|SINE|Alu	640149	NM_181839	5569	Hs.732129	NM_006823	ENSG00000171033	PKIA	PRKACN1	"protein kinase (cAMP-dependent, catalytic) inhibitor alpha"	protein-coding
chr14.54420427.+	chr14	54420427	54420428	+	0	NA	"intron (NM_130850, intron 1 of 3)"	CpG	843	NM_130851	652	Hs.68879	NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
chr5.1466238.-	chr5	1466238	1466239	-	0	NA	"intron (NM_024830, intron 13 of 13)"	CpG	20695	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr2.80188688.-	chr2	80188688	80188689	-	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	312203	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr22.41521421.+	chr22	41521421	41521422	+	0	NA	"intron (NM_001429, intron 2 of 30)"	AluJb|SINE|Alu	32807	NM_001429	2033	Hs.655211	NM_001429	ENSG00000100393	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
chr3.36494934.-	chr3	36494934	36494935	-	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	-72837	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr3.197225805.+	chr3	197225805	197225806	+	0	NA	Intergenic	CpG	57053	NM_203314	622	Hs.274539	NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	"3-hydroxybutyrate dehydrogenase, type 1"	protein-coding
chr14.105134377.-	chr14	105134377	105134378	-	0	NA	Intergenic	AluSz|SINE|Alu	-9709	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr3.174240466.+	chr3	174240466	174240467	+	0	NA	Intergenic	AluY|SINE|Alu	-336645	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr7.155246431.+	chr7	155246431	155246432	+	0	NA	Intergenic	CpG	-4393	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
chr10.16563014.-	chr10	16563014	16563015	-	0	NA	"exon (NM_001010908, exon 1 of 2)"	"exon (NM_001010908, exon 1 of 2)"	-990	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	"complement component 1, q subcomponent-like 3"	protein-coding
chr11.66224139.-	chr11	66224139	66224140	-	0	NA	Intergenic	AluY|SINE|Alu	9659	NM_001243135	246330	Hs.656875	NM_001098510	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
chr2.198058494.+	chr2	198058494	198058495	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117027	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr8.27695292.-	chr8	27695292	27695293	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-57	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr6.88118053.-	chr6	88118053	88118054	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-363	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr17.74894590.+	chr17	74894590	74894591	+	0	NA	"intron (NM_001199172, intron 3 of 16)"	AluSx|SINE|Alu	25861	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr17.40536568.-	chr17	40536568	40536569	-	0	NA	"intron (NM_139276, intron 1 of 23)"	"intron (NM_139276, intron 1 of 23)"	-3837	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr7.1587791.+	chr7	1587791	1587792	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8275	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr12.34353923.-	chr12	34353923	34353924	-	0	NA	Intergenic	AluSz|SINE|Alu	-178707	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr5.65936238.+	chr5	65936238	65936239	+	0	NA	"intron (NM_198828, intron 1 of 5)"	AluY|SINE|Alu	44062	NM_198828	375449	Hs.595458	NM_001164664	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
chr12.112426259.-	chr12	112426259	112426260	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24764	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr19.46987852.-	chr19	46987852	46987853	-	0	NA	"intron (NM_001205281, intron 3 of 3)"	AluSx|SINE|Alu	-11317	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
chr17.3317627.+	chr17	3317627	3317628	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6235	NM_012373	8392	Hs.532689	NM_012373	ENSG00000159961	OR3A3	OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P	"olfactory receptor, family 3, subfamily A, member 3"	protein-coding
chr14.101037853.+	chr14	101037853	101037854	+	0	NA	Intergenic	Intergenic	-1722	NM_020836	57596	Hs.211751	NM_001159531	ENSG00000183092	BEGAIN	-	brain-enriched guanylate kinase-associated	protein-coding
chr7.23287657.-	chr7	23287657	23287658	-	0	NA	"intron (NM_001005340, intron 1 of 10)"	"intron (NM_001005340, intron 1 of 10)"	-1341	NM_002510	10457	Hs.190495	NM_001005340	ENSG00000136235	GPNMB	HGFIN|NMB	glycoprotein (transmembrane) nmb	protein-coding
chr17.18785206.-	chr17	18785206	18785207	-	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	-16424	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr3.194930331.+	chr3	194930331	194930332	+	0	NA	"intron (NM_152531, intron 2 of 3)"	"intron (NM_152531, intron 2 of 3)"	61564	NM_152531	152002	Hs.743284	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
chrX.99100679.-	chrX	99100679	99100680	-	0	NA	"intron (NR_024608, intron 2 of 10)"	AluY|SINE|Alu	-94162	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr7.150812745.-	chr7	150812745	150812746	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28919	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr2.232277204.-	chr2	232277204	232277205	-	0	NA	Intergenic	Intergenic	-16869	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr5.1085892.-	chr5	1085892	1085893	-	0	NA	"intron (NM_006598, intron 6 of 23)"	"intron (NM_006598, intron 6 of 23)"	22803	NR_039778	100616479		NR_039778		MIR4635	-	microRNA 4635	miscRNA
chrX.86721018.-	chrX	86721018	86721019	-	0	NA	Intergenic	SVA_C|Other|Other	51697	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr3.39425757.+	chr3	39425757	39425758	+	0	NA	"intron (NM_017875, intron 1 of 6)"	CpG	942	NM_017875	54977	Hs.369615	NM_017875	ENSG00000144659	SLC25A38	-	"solute carrier family 25, member 38"	protein-coding
chr7.1542253.+	chr7	1542253	1542254	+	0	NA	"intron (NM_001080453, intron 3 of 47)"	"intron (NM_001080453, intron 3 of 47)"	1765	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
chr21.47343964.-	chr21	47343964	47343965	-	0	NA	"intron (NM_001130141, intron 8 of 12)"	CpG	57699	NM_001848	1291	Hs.474053	NM_001848	ENSG00000142156	COL6A1	OPLL	"collagen, type VI, alpha 1"	protein-coding
chr2.121244097.+	chr2	121244097	121244098	+	0	NA	Intergenic	Intergenic	-20172	NR_027181	84931	Hs.334519	NM_032845	ENSG00000268194	LOC84931	-	uncharacterized LOC84931	miscRNA
chr18.41408422.-	chr18	41408422	41408423	-	0	NA	Intergenic	AluSx3|SINE|Alu	550807	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr9.871350.-	chr9	871350	871351	-	0	NA	"intron (NM_021951, intron 2 of 4)"	AluY|SINE|Alu	-29660	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr12.54785044.-	chr12	54785044	54785045	-	0	NA	promoter-TSS (NM_001130968)	promoter-TSS (NM_001130968)	-39	NM_001130967	25946	Hs.505653	NM_001130967	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
chr16.69735147.-	chr16	69735147	69735148	-	0	NA	"3' UTR (NM_001113178, exon 15 of 15)"	"3' UTR (NM_001113178, exon 15 of 15)"	-25386	NM_001025434	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	"NAD(P)H dehydrogenase, quinone 1"	protein-coding
chr7.148580914.+	chr7	148580914	148580915	+	0	NA	promoter-TSS (NM_001203249)	promoter-TSS (NM_001203249)	-313	NM_001203249	2146	Hs.732308	NM_001203247	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2	enhancer of zeste homolog 2 (Drosophila)	protein-coding
chr5.18111520.+	chr5	18111520	18111521	+	0	NA	Intergenic	AluY|SINE|Alu	-724101	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr16.85299135.-	chr16	85299135	85299136	-	0	NA	Intergenic	L2c|LINE|L2	17429	NR_038859	197196	Hs.679002	NR_038859	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	miscRNA
chr2.153192676.+	chr2	153192676	153192677	+	0	NA	"intron (NM_052905, intron 1 of 25)"	CpG	925	NM_052905	114793	Hs.654630	NM_052905	ENSG00000157827	FMNL2	FHOD2	formin-like 2	protein-coding
chr6.168149215.-	chr6	168149215	168149216	-	0	NA	Intergenic	Intergenic	-48324	NR_026773	26238	Hs.520583	NR_026773	ENSG00000146521	C6orf123	HGC6.2|RP3-431P23.4|dJ431P23.4	chromosome 6 open reading frame 123	miscRNA
chr19.5148572.-	chr19	5148572	5148573	-	0	NA	"intron (NM_015015, intron 21 of 22)"	"intron (NM_015015, intron 21 of 22)"	-179448	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
chr22.21022171.-	chr22	21022171	21022172	-	0	NA	Intergenic	CpG	21672	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin-like 4 pseudogene	pseudo
chr11.73486277.+	chr11	73486277	73486278	+	0	NA	Intergenic	SVA_C|Other|Other	-12640	NM_016055	51642	Hs.503239	NM_016055		MRPL48	HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding
chr16.70356414.-	chr16	70356414	70356415	-	0	NA	"intron (NM_001014449, intron 3 of 9)"	AluSz6|SINE|Alu	-23352	NM_007242	11269	Hs.221761	NM_001014449	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
chr2.182548984.-	chr2	182548984	182548985	-	0	NA	Intergenic	CpG	3592	NM_002500	4760	Hs.709709	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
chr19.47364606.+	chr19	47364606	47364607	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10403	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr7.33164265.-	chr7	33164265	33164266	-	0	NA	Intergenic	AluYf5|SINE|Alu	4887	NM_001033604	27241	Hs.372360	NM_001033604	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
chr22.22259628.-	chr22	22259628	22259629	-	0	NA	Intergenic	AluSq2|SINE|Alu	37658	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr5.178157717.+	chr5	178157717	178157718	+	0	NA	promoter-TSS (NM_005649)	promoter-TSS (NM_005649)	-14	NM_005649	6940	Hs.484324	NM_005649	ENSG00000169131	ZNF354A	EZNF|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
chr7.45125733.-	chr7	45125733	45125734	-	0	NA	"intron (NM_001146334, intron 1 of 7)"	"intron (NM_001146334, intron 1 of 7)"	-2760	NM_001146334	23148	Hs.96633	NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
chr2.111367809.+	chr2	111367809	111367810	+	0	NA	Intergenic	Intergenic	-31500	NM_001037866	729540	Hs.645445	NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2-like and GRIP domain containing 6	protein-coding
chr8.8559295.-	chr8	8559295	8559296	-	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	371	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr10.120946161.+	chr10	120946161	120946162	+	0	NA	Intergenic	AluY|SINE|Alu	-7816	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr11.63993759.-	chr11	63993759	63993760	-	0	NA	promoter-TSS (NM_001128612)	promoter-TSS (NM_001128612)	-13	NM_032344	84304	Hs.744098	NM_001128612	ENSG00000149761	NUDT22	-	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding
chr14.103988577.+	chr14	103988577	103988578	+	0	NA	"intron (NM_001823, intron 2 of 7)"	CpG-7449	619	NM_001823	1152	Hs.173724	NM_001823	ENSG00000166165	CKB	B-CK|CKBB	"creatine kinase, brain"	protein-coding
chr3.28951298.-	chr3	28951298	28951299	-	0	NA	Intergenic	AluY|SINE|Alu	-334529	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr1.111216916.+	chr1	111216916	111216917	+	0	NA	"exon (NM_002232, exon 1 of 1)"	"exon (NM_002232, exon 1 of 1)"	739	NM_002232	3738	Hs.169948	NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	"potassium voltage-gated channel, shaker-related subfamily, member 3"	protein-coding
chr13.50177058.+	chr13	50177058	50177059	+	0	NA	Intergenic	AluY|SINE|Alu	-17339	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr20.61885856.+	chr20	61885856	61885857	+	0	NA	promoter-TSS (NM_152864)	promoter-TSS (NM_152864)	36	NM_152864	128414	Hs.46627	NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	Na+/K+ transporting ATPase interacting 4	protein-coding
chr6.70692629.-	chr6	70692629	70692630	-	0	NA	"intron (NM_001858, intron 11 of 50)"	AluY|SINE|Alu	-116181	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	"collagen, type XIX, alpha 1"	protein-coding
chr9.34070270.+	chr9	34070270	34070271	+	0	NA	Intergenic	AluSz|SINE|Alu	-21323	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chrX.100277467.+	chrX	100277467	100277468	+	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	29638	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr14.106100038.+	chr14	106100038	106100039	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	39106	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	"ELK2A, member of ETS oncogene family, pseudogene"	pseudo
chr3.174240471.+	chr3	174240471	174240472	+	0	NA	Intergenic	AluY|SINE|Alu	-336640	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr6.166331211.-	chr6	166331211	166331212	-	0	NA	Intergenic	Intergenic	69828	NR_027284	441177	Hs.708964	NM_001013720		LINC00602	-	long intergenic non-protein coding RNA 602	miscRNA
chr3.142607844.+	chr3	142607844	142607845	+	0	NA	"5' UTR (NM_013363, exon 1 of 9)"	"5' UTR (NM_013363, exon 1 of 9)"	201	NM_013363	26577	Hs.8944	NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
chr17.4256996.+	chr17	4256996	4256997	+	0	NA	"intron (NM_003342, intron 1 of 5)"	AluSc|SINE|Alu	12973	NM_003342	7326	Hs.741319	NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin-conjugating enzyme E2G 1	protein-coding
chr16.77246810.+	chr16	77246810	77246811	+	0	NA	"exon (NM_001129979, exon 11 of 11)"	"exon (NM_001129979, exon 11 of 11)"	13461	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
chr19.10108045.-	chr19	10108045	10108046	-	0	NA	"intron (NM_015719, intron 11 of 66)"	"intron (NM_015719, intron 11 of 66)"	-13102	NM_015719	50509	Hs.235368	NM_015719	ENSG00000080573	COL5A3	-	"collagen, type V, alpha 3"	protein-coding
chr1.31517127.-	chr1	31517127	31517128	-	0	NA	"intron (NM_014676, intron 2 of 21)"	AluYf4|SINE|Alu	-21437	NM_001020658	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr1.153574143.+	chr1	153574143	153574144	+	0	NA	Intergenic	AluY|SINE|Alu	11371	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr1.154733100.-	chr1	154733100	154733101	-	0	NA	"intron (NM_001204087, intron 3 of 8)"	CpG	-99238	NM_170782	3782	Hs.490765	NM_001204087		KCNN3	KCa2.3|SK3|SKCA3|hSK3	"potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3"	protein-coding
chr14.71374350.+	chr14	71374350	71374351	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	228	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr18.77244897.-	chr18	77244897	77244898	-	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	-84571	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr22.51001380.-	chr22	51001380	51001381	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	52	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr3.171758276.-	chr3	171758276	171758277	-	0	NA	promoter-TSS (NM_001135095)	promoter-TSS (NM_001135095)	68	NM_001135095	64778	Hs.159430	NM_001135095	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
chr5.112263715.+	chr5	112263715	112263716	+	0	NA	Intergenic	AluY|SINE|Alu	-5684	NM_005669	7905	Hs.429608	NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
chr9.129229394.-	chr9	129229394	129229395	-	0	NA	"intron (NM_033446, intron 7 of 9)"	AluJb|SINE|Alu	56611	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	"non-protein coding RNA, repressor of NFAT"	miscRNA
chr9.6807785.-	chr9	6807785	6807786	-	0	NA	"intron (NM_001146694, intron 3 of 20)"	SVA_F|Other|Other	-50144	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr1.27503604.+	chr1	27503604	27503605	+	0	NA	Intergenic	Intergenic	-21983	NM_003047	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|NHE-1|NHE1	"solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1"	protein-coding
chr5.1586733.-	chr5	1586733	1586734	-	0	NA	"intron (NR_003263, intron 3 of 6)"	SVA_D|Other|Other	-7913	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3"	pseudo
chr22.34378788.+	chr22	34378788	34378789	+	0	NA	Intergenic	AluSx1|SINE|Alu	-62372	NM_004737	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE	MDC1D|MDDGA6|MDDGB6	like-glycosyltransferase	protein-coding
chr17.1634078.+	chr17	1634078	1634079	+	0	NA	"exon (NM_001163673, exon 3 of 10)"	"exon (NM_001163673, exon 3 of 10)"	5953	NM_001163809	124997	Hs.234572	NM_001163673	ENSG00000167716	WDR81	CAMRQ2	WD repeat domain 81	protein-coding
chr9.130995378.+	chr9	130995378	130995379	+	0	NA	"intron (NM_001005336, intron 10 of 21)"	"intron (NM_001005336, intron 10 of 21)"	11731	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	miscRNA
chr4.69917189.+	chr4	69917189	69917190	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-31076	NM_001144767	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	"UDP glucuronosyltransferase 2 family, polypeptide B10"	protein-coding
chr9.14830625.+	chr9	14830625	14830626	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51094	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr7.64493640.+	chr7	64493640	64493641	+	0	NA	Intergenic	SVA_C|Other|Other	-5092	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	"chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3"	pseudo
chr5.170687163.-	chr5	170687163	170687164	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49125	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chr1.5005192.+	chr1	5005192	5005193	+	0	NA	Intergenic	Intergenic	290087	NM_018836	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr7.532183.-	chr7	532183	532184	-	0	NA	Intergenic	Intergenic	-27298	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr13.112722092.-	chr13	112722092	112722093	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-179	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr18.46969343.-	chr18	46969343	46969344	-	0	NA	"intron (NM_017653, intron 1 of 16)"	AluSx|SINE|Alu	-17736	NM_017653	54808	Hs.162996	NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
chr3.8721168.-	chr3	8721168	8721169	-	0	NA	Intergenic	Intergenic	27404	NM_001256749	51066	Hs.740735	NM_001256748	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
chr15.76627320.+	chr15	76627320	76627321	+	0	NA	Intergenic	AluSg|SINE|Alu	-1827	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
chr16.3109384.-	chr16	3109384	3109385	-	0	NA	"3' UTR (NM_022468, exon 10 of 10)"	"3' UTR (NM_022468, exon 10 of 10)"	5929	NM_004221	9235	Hs.943	NM_001012631	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
chr20.46019529.-	chr20	46019529	46019530	-	0	NA	Intergenic	AluY|SINE|Alu	34055	NM_183048	23613	Hs.668465	NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	"zinc finger, MYND-type containing 8"	protein-coding
chr7.138540902.-	chr7	138540902	138540903	-	0	NA	"intron (NM_001164665, intron 16 of 19)"	AluYk4|SINE|Alu	57961	NM_020632	50617	Hs.98967	NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	"ATPase, H+ transporting, lysosomal V0 subunit a4"	protein-coding
chr2.223289081.-	chr2	223289081	223289082	-	0	NA	promoter-TSS (NM_152386)	promoter-TSS (NM_152386)	241	NM_152386	130367	Hs.591604	NM_152386		SGPP2	SPP2	sphingosine-1-phosphate phosphatase 2	protein-coding
chr19.34394381.-	chr19	34394381	34394382	-	0	NA	Intergenic	AluSx1|SINE|Alu	-106630	NM_024076	79047	Hs.606506	NM_001129994	ENSG00000153885	KCTD15	-	potassium channel tetramerisation domain containing 15	protein-coding
chr14.72398988.+	chr14	72398988	72398989	+	0	NA	promoter-TSS (NM_001204420)	promoter-TSS (NM_001204420)	-168	NM_001204424	9628	Hs.509872	NM_001204416	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
chr19.14551305.+	chr19	14551305	14551306	+	0	NA	"intron (NM_213560, intron 1 of 21)"	"intron (NM_213560, intron 1 of 21)"	219	NM_213560	5585	Hs.466044	NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
chr22.41215518.-	chr22	41215518	41215519	-	0	NA	promoter-TSS (NM_006358)	promoter-TSS (NM_006358)	126	NM_006358	10478	Hs.474938	NM_006358	ENSG00000100372	SLC25A17	PMP34	"solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17"	protein-coding
chr14.55032935.-	chr14	55032935	55032936	-	0	NA	Intergenic	CpG	1395	NM_001161576	23034	Hs.733324	NM_001161576	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
chr4.185656751.+	chr4	185656751	185656752	+	0	NA	Intergenic	AluY|SINE|Alu	-1465	NM_024629	79682	Hs.575032	NM_024629		MLF1IP	CENP50|CENPU|CENPU50|KLIP1|PBIP1	MLF1 interacting protein	protein-coding
chr19.4065754.-	chr19	4065754	4065755	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1062	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr14.77743577.+	chr14	77743577	77743578	+	0	NA	"3' UTR (NM_013382, exon 21 of 21)"	"3' UTR (NM_013382, exon 21 of 21)"	-5922	NM_021257	58157	Hs.274363	NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
chr12.112407468.+	chr12	112407468	112407469	+	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	43555	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr10.28933577.+	chr10	28933577	28933578	+	0	NA	Intergenic	AluSz|SINE|Alu	-32847	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)	protein-coding
chr14.24785817.-	chr14	24785817	24785818	-	0	NA	"exon (NM_001143919, exon 2 of 2)"	"exon (NM_001143919, exon 2 of 2)"	-3504	NM_181657	1241	Hs.567248	NM_001143919	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
chr8.100115813.+	chr8	100115813	100115814	+	0	NA	"intron (NR_047582, intron 6 of 8)"	AluY|SINE|Alu	90319	NM_152564	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
chr19.58784231.+	chr19	58784231	58784232	+	0	NA	Intergenic	AluSg|SINE|Alu	-6087	NM_021089	7554	Hs.713519	NM_021089	ENSG00000083842	ZNF8	HF.18|Zfp128	zinc finger protein 8	protein-coding
chr13.77954598.+	chr13	77954598	77954599	+	0	NA	Intergenic	AluSc|SINE|Alu	-53421	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr3.46792292.-	chr3	46792292	46792293	-	0	NA	Intergenic	CpG	6047	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	"protease, serine, 45"	protein-coding
chr16.13534737.+	chr16	13534737	13534738	+	0	NA	Intergenic	AluSc|SINE|Alu	-479277	NM_005236	2072	Hs.567265	NM_005236	ENSG00000175595	ERCC4	ERCC11|RAD1|XPF	"excision repair cross-complementing rodent repair deficiency, complementation group 4"	protein-coding
chr5.170687187.-	chr5	170687187	170687188	-	0	NA	"intron (NM_022897, intron 24 of 27)"	AluSx1|SINE|Alu	49101	NM_021025	30012	Hs.249125	NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
chrX.39680405.-	chrX	39680405	39680406	-	0	NA	Intergenic	CpG	-276314	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr2.48010467.+	chr2	48010467	48010468	+	0	NA	"exon (NM_000179, exon 1 of 10)"	"exon (NM_000179, exon 1 of 10)"	246	NM_000179	2956	Hs.445052	NM_000179	ENSG00000116062	MSH6	GTBP|HNPCC5|HSAP	mutS homolog 6 (E. coli)	protein-coding
chr15.90333214.+	chr15	90333214	90333215	+	0	NA	"intron (NM_001150, intron 20 of 20)"	AluYc|SINE|Alu	13625	NM_001039958	145873	Hs.37311	NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior 2 homolog (mouse)	protein-coding
chr1.39107569.+	chr1	39107569	39107570	+	0	NA	Intergenic	LTR1B|LTR|ERV1	217926	NM_022157	64121	Hs.532461	NM_001271851		RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
chr19.45147388.-	chr19	45147388	45147389	-	0	NA	"5' UTR (NM_001135769, exon 1 of 7)"	"5' UTR (NM_001135769, exon 1 of 7)"	-290	NM_006505	5817	Hs.171844	NM_001135768	ENSG00000073008	PVR	CD155|HVED|NECL5|Necl-5|PVS|TAGE4	poliovirus receptor	protein-coding
chr7.936440.-	chr7	936440	936441	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20249	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr10.76198256.-	chr10	76198256	76198257	-	0	NA	"intron (NM_001202450, intron 6 of 9)"	AluSc8|SINE|Alu	-262009	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
chr16.1815042.+	chr16	1815042	1815043	+	0	NA	"exon (NM_001040439, exon 19 of 31)"	"exon (NM_001040439, exon 19 of 31)"	6668	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
chr8.146024426.-	chr8	146024426	146024427	-	0	NA	"intron (NM_213605, intron 1 of 4)"	CpG	-165	NM_213605	340385	Hs.521942	NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
chr2.10205153.+	chr2	10205153	10205154	+	0	NA	"intron (NM_001037160, intron 2 of 2)"	AluSz|SINE|Alu	15385	NM_001037160	192668	Hs.720471	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
chr15.89358738.-	chr15	89358738	89358739	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12064	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr8.120878166.+	chr8	120878166	120878167	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7734	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
chr15.91370839.-	chr15	91370839	91370840	-	0	NA	Intergenic	AluSz|SINE|Alu	41046	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr3.36494764.+	chr3	36494764	36494765	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72667	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr10.20638025.-	chr10	20638025	20638026	-	0	NA	Intergenic	Intergenic	202874	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	miscRNA
chr15.63229222.+	chr15	63229222	63229223	+	0	NA	Intergenic	AluSp|SINE|Alu	-105616	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chr17.25676741.+	chr17	25676741	25676742	+	0	NA	Intergenic	MER52D|LTR|ERV1	55635	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
chr3.14349526.+	chr3	14349526	14349527	+	0	NA	Intergenic	Intergenic	-94580	NM_001134367	6533	Hs.529488	NM_001134367	ENSG00000131389	SLC6A6	TAUT	"solute carrier family 6 (neurotransmitter transporter, taurine), member 6"	protein-coding
chr6.168395056.+	chr6	168395056	168395057	+	0	NA	Intergenic	AluSx|SINE|Alu	-17437	NM_001129895	100128124	Hs.448059	XM_003846691		HGC6.3	-	uncharacterized LOC100128124	protein-coding
chr17.34072166.-	chr17	34072166	34072167	-	0	NA	"exon (NM_139285, exon 6 of 6)"	"exon (NM_139285, exon 6 of 6)"	-7731	NM_139285	246176	Hs.591194	NM_139285	ENSG00000132139	GAS2L2	GAR17	growth arrest-specific 2 like 2	protein-coding
chr7.5355968.-	chr7	5355968	5355969	-	0	NA	"intron (NM_001080495, intron 24 of 29)"	AluSp|SINE|Alu	-33407	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr10.45240299.+	chr10	45240299	45240300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166465	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chrX.13062329.+	chrX	13062329	13062330	+	0	NA	"intron (NM_174901, intron 1 of 7)"	"intron (NM_174901, intron 1 of 7)"	588	NM_174901	171484	Hs.667546	NM_174901	ENSG00000187268	FAM9C	TEX39C	"family with sequence similarity 9, member C"	protein-coding
chr2.192374886.+	chr2	192374886	192374887	+	0	NA	Intergenic	AluY|SINE|Alu	-167912	NM_001254736	64859	Hs.591610	NM_022837	ENSG00000173559	NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
chr22.44600832.+	chr22	44600832	44600833	+	0	NA	"intron (NM_022141, intron 12 of 13)"	"intron (NM_022141, intron 12 of 13)"	23575	NM_001137606	64098	Hs.666944	NM_001137606	ENSG00000138964	PARVG	-	"parvin, gamma"	protein-coding
chr17.18785223.+	chr17	18785223	18785224	+	0	NA	"intron (NM_002767, intron 6 of 11)"	AluSx4|SINE|Alu	16441	NM_001243940	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr18.73357758.-	chr18	73357758	73357759	-	0	NA	Intergenic	L2|LINE|L2	218169	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr12.133328258.-	chr12	133328258	133328259	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10193	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr8.133680828.+	chr8	133680828	133680829	+	0	NA	"intron (NR_073525, intron 1 of 12)"	AluY|SINE|Alu	7035	NR_073525	23639	Hs.591865	NM_012472	ENSG00000129295	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
chr7.129803692.-	chr7	129803692	129803693	-	0	NA	TTS (NM_032842)	TTS (NM_032842)	-41646	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
chr2.95885041.+	chr2	95885041	95885042	+	0	NA	Intergenic	AluY|SINE|Alu	53858	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr21.45684292.+	chr21	45684292	45684293	+	0	NA	Intergenic	AluY|SINE|Alu	-2193	NM_013369	29947	Hs.592165	NM_013369	ENSG00000142182	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
chr2.27526304.+	chr2	27526304	27526305	+	0	NA	"intron (NM_032546, intron 4 of 9)"	AluSx3|SINE|Alu	4826	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
chr16.29422129.+	chr16	29422129	29422130	+	0	NA	Intergenic	AluSx|SINE|Alu	-38537	NR_002454	606724	Hs.654867	NR_002454		LOC606724	-	"coronin, actin binding protein, 1A pseudogene"	pseudo
chr16.4835182.-	chr16	4835182	4835183	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3216	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr18.77244864.+	chr18	77244864	77244865	+	0	NA	"intron (NM_172387, intron 8 of 9)"	"intron (NM_172387, intron 8 of 9)"	84538	NM_172389	4772	Hs.701518	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NFAT2|NFATc	"nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1"	protein-coding
chr3.181626460.-	chr3	181626460	181626461	-	0	NA	Intergenic	AluY|SINE|Alu	-196748	NM_003106	6657	Hs.732963	NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
chr17.40536642.+	chr17	40536642	40536643	+	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	3763	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr3.125203706.-	chr3	125203706	125203707	-	0	NA	"intron (NR_073435, intron 5 of 12)"	AluSx1|SINE|Alu	-35352	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr19.9129855.-	chr19	9129855	9129856	-	0	NA	Intergenic	AluSx|SINE|Alu	37837	NM_024690	94025	Hs.432676	NM_024690	ENSG00000181143	MUC16	CA125	"mucin 16, cell surface associated"	protein-coding
chr2.213546681.-	chr2	213546681	213546682	-	0	NA	Intergenic	AluSc8|SINE|Alu	143329	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr2.92162950.+	chr2	92162950	92162951	+	0	NA	Intergenic	CpG	33791	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr19.18416254.-	chr19	18416254	18416255	-	0	NA	TTS (NM_001252129)	TTS (NM_001252129)	-17747	NM_012321	25804	Hs.515255	NM_001252129	ENSG00000130520	LSM4	GRP|YER112W	"LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)"	protein-coding
chr5.172599818.-	chr5	172599818	172599819	-	0	NA	Intergenic	AluSc8|SINE|Alu	-28373	NM_013979	662	Hs.145726	NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2/adenovirus E1B 19kDa interacting protein 1	protein-coding
chr2.202045950.+	chr2	202045950	202045951	+	0	NA	Intergenic	Intergenic	-1671	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr12.121078172.+	chr12	121078172	121078173	+	0	NA	promoter-TSS (NM_001033677)	promoter-TSS (NM_001033677)	-250	NM_001033677	9478	Hs.458482	NM_001033677	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
chr1.10727903.-	chr1	10727903	10727904	-	0	NA	"intron (NM_001079843, intron 4 of 20)"	"intron (NM_001079843, intron 4 of 20)"	-128830	NM_001079843	54897	Hs.439894	NM_001079843	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
chr9.137588877.-	chr9	137588877	137588878	-	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	-55225	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr18.73357770.-	chr18	73357770	73357771	-	0	NA	Intergenic	L2|LINE|L2	218181	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr4.114652844.+	chr4	114652844	114652845	+	0	NA	"intron (NM_172115, intron 2 of 16)"	AluSx3|SINE|Alu	30239	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
chrX.135229878.+	chrX	135229878	135229879	+	0	NA	promoter-TSS (NM_001159700)	promoter-TSS (NM_001159700)	319	NM_001449	2273	Hs.435369	NM_001159699	ENSG00000022267	FHL1	FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
chr13.48030606.-	chr13	48030606	48030607	-	0	NA	Intergenic	AluYb8|SINE|Alu	-544856	NM_003850	8803	Hs.743361	NM_003850	ENSG00000136143	SUCLA2	A-BETA|MTDPS5|SCS-betaA	"succinate-CoA ligase, ADP-forming, beta subunit"	protein-coding
chr20.4729584.+	chr20	4729584	4729585	+	0	NA	Intergenic	Intergenic	-8270	NR_024267	149830	Hs.126516	NR_024267	ENSG00000180259	PRNT	M8	prion protein (testis specific)	miscRNA
chr3.48533696.-	chr3	48533696	48533697	-	0	NA	"intron (NM_001272065, intron 2 of 5)"	AluSc8|SINE|Alu	-7787	NM_001272068	51246	Hs.664265	NM_001272065	ENSG00000164054	SHISA5	SCOTIN	shisa homolog 5 (Xenopus laevis)	protein-coding
chr22.51001318.+	chr22	51001318	51001319	+	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	10	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr19.3093848.-	chr19	3093848	3093849	-	0	NA	promoter-TSS (NM_002067)	promoter-TSS (NM_002067)	560	NM_002067	2767	Hs.654784	NM_002067		GNA11	GNA-11	"guanine nucleotide binding protein (G protein), alpha 11 (Gq class)"	protein-coding
chr11.68714268.-	chr11	68714268	68714269	-	0	NA	Intergenic	LTR16A1|LTR|ERVL	-34187	NM_198923	116512	Hs.527802	NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	"MAS-related GPR, member D"	protein-coding
chr6.167607666.-	chr6	167607666	167607667	-	0	NA	Intergenic	Intergenic	-23585	NM_001145121	401285	Hs.691976	NM_001145121	ENSG00000166984	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
chr7.61969299.-	chr7	61969299	61969300	-	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-795135	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	"zinc finger protein 733, pseudogene"	pseudo
chr13.24897879.+	chr13	24897879	24897880	+	0	NA	Intergenic	Intergenic	14163	NM_178540	338872	Hs.362854	NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
chr2.213546621.-	chr2	213546621	213546622	-	0	NA	Intergenic	AluSc8|SINE|Alu	143269	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr9.135947003.-	chr9	135947003	135947004	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9638	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr2.218415283.-	chr2	218415283	218415284	-	0	NA	"intron (NR_026597, intron 2 of 12)"	AluSx1|SINE|Alu	-206033	NR_026597	729582	Hs.572788	NR_026597		DIRC3	-	disrupted in renal carcinoma 3	miscRNA
chr6.126100218.-	chr6	126100218	126100219	-	0	NA	Intergenic	AluY|SINE|Alu	2089	NM_001199619	135112	Hs.171426	NM_001122842	ENSG00000111912	NCOA7	ERAP140|ESNA1|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
chrX.53123331.-	chrX	53123331	53123332	-	0	NA	Intergenic	CpG	-11789	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr11.66102171.-	chr11	66102171	66102172	-	0	NA	"exon (NM_004292, exon 6 of 10)"	"exon (NM_004292, exon 6 of 10)"	-1829	NM_004292	9610	Hs.1030	NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
chr22.29760753.-	chr22	29760753	29760754	-	0	NA	"intron (NM_001127, intron 2 of 22)"	AluSx|SINE|Alu	-23819	NM_001127	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	"adaptor-related protein complex 1, beta 1 subunit"	protein-coding
chr10.104255208.+	chr10	104255208	104255209	+	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	7304	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr6.159515354.+	chr6	159515354	159515355	+	0	NA	Intergenic	Intergenic	-49170	NM_054114	117289	Hs.529984	NM_054114	ENSG00000164691	TAGAP	ARHGAP47|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
chr12.132313108.+	chr12	132313108	132313109	+	0	NA	"exon (NM_016155, exon 1 of 10)"	"exon (NM_016155, exon 1 of 10)"	167	NM_016155	4326	Hs.709245	NM_016155	ENSG00000198598	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
chr5.1494526.-	chr5	1494526	1494527	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29550	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr15.41539530.+	chr15	41539530	41539531	+	0	NA	"intron (NM_007236, intron 2 of 6)"	AluSz|SINE|Alu	16093	NM_007236	11261	Hs.732259	NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|Sid470p|p22|p24	calcineurin-like EF-hand protein 1	protein-coding
chr8.144267551.+	chr8	144267551	144267552	+	0	NA	Intergenic	CpG	-25498	NM_001130478	4062	Hs.159590	NM_001130478	ENSG00000176956	LY6H	NMLY6	"lymphocyte antigen 6 complex, locus H"	protein-coding
chr9.115652497.-	chr9	115652497	115652498	-	0	NA	"exon (NM_033051, exon 1 of 4)"	"exon (NM_033051, exon 1 of 4)"	-696	NM_033051	57864	Hs.512668	NM_033051	ENSG00000119457	SLC46A2	Ly110|TSCOT	"solute carrier family 46, member 2"	protein-coding
chr16.58300802.-	chr16	58300802	58300803	-	0	NA	"intron (NM_014157, intron 6 of 8)"	MIR|SINE|MIR	-16962	NM_014157	29070	Hs.11614	NM_001142302	ENSG00000103021	CCDC113	-	coiled-coil domain containing 113	protein-coding
chr17.51017127.+	chr17	51017127	51017128	+	0	NA	Intergenic	AluY|SINE|Alu	-45753	NM_001243552	100506650	Hs.146556	NM_001243552	ENSG00000227011	C17orf112	-	chromosome 17 open reading frame 112	protein-coding
chr11.70244792.+	chr11	70244792	70244793	+	0	NA	"intron (NM_138565, intron 1 of 16)"	CpG	180	NM_138565	2017	Hs.596164	NM_001184740	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
chr2.213546662.-	chr2	213546662	213546663	-	0	NA	Intergenic	AluSc8|SINE|Alu	143310	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr16.1838760.+	chr16	1838760	1838761	+	0	NA	"3' UTR (NM_012225, exon 7 of 7)"	"3' UTR (NM_012225, exon 7 of 7)"	4974	NM_004970	3483	Hs.839	NM_001146006	ENSG00000099769	IGFALS	ALS	"insulin-like growth factor binding protein, acid labile subunit"	protein-coding
chr16.87434042.+	chr16	87434042	87434043	+	0	NA	"intron (NM_022818, intron 2 of 3)"	AluY|SINE|Alu	8241	NM_022818	81631	Hs.356061	NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule-associated protein 1 light chain 3 beta	protein-coding
chr1.227015935.-	chr1	227015935	227015936	-	0	NA	Intergenic	Intergenic	42338	NM_012486	5664	Hs.25363	NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2 (Alzheimer disease 4)	protein-coding
chr7.394770.+	chr7	394770	394771	+	0	NA	Intergenic	Intergenic	-24621	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr19.58963034.-	chr19	58963034	58963035	-	0	NA	promoter-TSS (NM_207395)	promoter-TSS (NM_207395)	-63	NM_207395	388569	Hs.186970	NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
chr7.3119876.-	chr7	3119876	3119877	-	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	36367	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr21.46737138.-	chr21	46737138	46737139	-	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-29171	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	miscRNA
chr21.47838732.+	chr21	47838732	47838733	+	0	NA	"intron (NM_006031, intron 31 of 46)"	"intron (NM_006031, intron 31 of 46)"	-40130	NM_206890	23181	Hs.189585	NM_001146114	ENSG00000160305	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
chr15.91370877.-	chr15	91370877	91370878	-	0	NA	Intergenic	AluSz|SINE|Alu	41008	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr19.57585350.+	chr19	57585350	57585351	+	0	NA	Intergenic	AluSx1|SINE|Alu	-46159	NM_020903	57663	Hs.515632	NM_020903	ENSG00000131864	USP29	HOM-TES-84/86	ubiquitin specific peptidase 29	protein-coding
chr7.26294399.-	chr7	26294399	26294400	-	0	NA	Intergenic	AluSx1|SINE|Alu	37116	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr12.43781868.+	chr12	43781868	43781869	+	0	NA	"intron (NM_025003, intron 29 of 38)"	L1PA7|LINE|L1	163856	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	"ADAM metallopeptidase with thrombospondin type 1 motif, 20"	protein-coding
chr3.31574339.-	chr3	31574339	31574340	-	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	152	NM_178862	201595	Hs.475812	NM_178862		STT3B	SIMP|STT3-B	"STT3B, subunit of the oligosaccharyltransferase complex (catalytic)"	protein-coding
chr2.128430602.+	chr2	128430602	128430603	+	0	NA	"intron (NM_001161404, intron 1 of 9)"	"intron (NM_001161404, intron 1 of 9)"	2162	NM_001161403	55679	Hs.469881	NM_001136037	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
chr2.132978663.+	chr2	132978663	132978664	+	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	35990	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr2.10952777.+	chr2	10952777	10952778	+	0	NA	"intron (NM_005742, intron 1 of 12)"	CpG	183	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr13.105902601.+	chr13	105902601	105902602	+	0	NA	Intergenic	AluY|SINE|Alu	-215615	NM_001161814	267012	Hs.381382	NM_001161812	ENSG00000182346	DAOA	G72|LG72|SG72	D-amino acid oxidase activator	protein-coding
chr6.57322550.-	chr6	57322550	57322551	-	0	NA	"intron (NM_000947, intron 7 of 14)"	L1PA4|LINE|L1	-140128	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	"primase, DNA, polypeptide 2 (58kDa)"	protein-coding
chr19.14508479.-	chr19	14508479	14508480	-	0	NA	"exon (NM_078481, exon 7 of 20)"	"exon (NM_078481, exon 7 of 20)"	-16523	NM_001784	976	Hs.466039	NM_001025160	ENSG00000123146	CD97	TM7LN1	CD97 molecule	protein-coding
chr3.126207222.-	chr3	126207222	126207223	-	0	NA	"intron (NM_001165974, intron 18 of 20)"	"intron (NM_001165974, intron 18 of 20)"	12460	NM_025112	79364	Hs.711046	NM_001040653	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
chr9.139721721.+	chr9	139721721	139721722	+	0	NA	"intron (NM_001173988, intron 3 of 14)"	"intron (NM_001173988, intron 3 of 14)"	-3688	NR_036251	100422860		NR_036251		MIR4292	-	microRNA 4292	miscRNA
chr20.18673632.+	chr20	18673632	18673633	+	0	NA	"intron (NM_080820, intron 4 of 5)"	AluSz|SINE|Alu	100994	NR_026884	29075	Hs.584899	NM_014162	ENSG00000179935	LINC00652	HSPC072	long intergenic non-protein coding RNA 652	miscRNA
chr16.11746957.-	chr16	11746957	11746958	-	0	NA	Intergenic	AluSx1|SINE|Alu	15332	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
chr7.95234915.+	chr7	95234915	95234916	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8990	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr5.115953526.-	chr5	115953526	115953527	-	0	NA	Intergenic	AluY|SINE|Alu	42975	NM_020796	57556	Hs.156967	NM_020796	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A"	protein-coding
chr12.76859069.-	chr12	76859069	76859070	-	0	NA	"intron (NM_020841, intron 2 of 23)"	AluY|SINE|Alu	-94520	NM_020841	114882	Hs.430849	NM_001003712	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein-like 8	protein-coding
chr20.32469512.-	chr20	32469512	32469513	-	0	NA	Intergenic	AluSp|SINE|Alu	-70402	NM_176812	128866	Hs.472471	NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
chr13.96742782.-	chr13	96742782	96742783	-	0	NA	promoter-TSS (NM_153456)	promoter-TSS (NM_153456)	311	NM_153456	266722	Hs.740393	XM_003846570		HS6ST3	HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
chr10.134034469.+	chr10	134034469	134034470	+	0	NA	"intron (NM_173575, intron 10 of 11)"	LTR8|LTR|ERV1	34055	NM_006426	10570	Hs.100058	NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
chr15.65715268.-	chr15	65715268	65715269	-	0	NA	"5' UTR (NM_020962, exon 1 of 20)"	"5' UTR (NM_020962, exon 1 of 20)"	-142	NM_020962	57722	Hs.458607	NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	"immunoglobulin superfamily, DCC subclass, member 4"	protein-coding
chr2.80188690.+	chr2	80188690	80188691	+	0	NA	"intron (NM_001164883, intron 7 of 16)"	AluY|SINE|Alu	-312205	NR_036231	100422888		NR_036231	ENSG00000266436	MIR4264	-	microRNA 4264	miscRNA
chr17.73615805.-	chr17	73615805	73615806	-	0	NA	"intron (NR_003587, intron 44 of 60)"	"intron (NR_003587, intron 44 of 60)"	13709	NM_001162995	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr8.8559343.+	chr8	8559343	8559344	+	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	-323	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr3.9398183.+	chr3	9398183	9398184	+	0	NA	Intergenic	AluY|SINE|Alu	-6534	NM_001114092	25917	Hs.443081	NM_001114092	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
chrX.133565047.+	chrX	133565047	133565048	+	0	NA	Intergenic	AluSp|SINE|Alu	-29128	NM_000194	3251	Hs.412707	NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
chr19.21734817.-	chr19	21734817	21734818	-	0	NA	Intergenic	SVA_D|Other|Other	-46380	NM_001001415	353088	Hs.709598	NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
chr12.133328271.+	chr12	133328271	133328272	+	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	10180	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr21.44478108.-	chr21	44478108	44478109	-	0	NA	"intron (NM_000071, intron 15 of 16)"	"intron (NM_000071, intron 15 of 16)"	-17932	NM_000071	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding
chr20.62294567.+	chr20	62294567	62294568	+	0	NA	"intron (NR_037882, intron 6 of 37)"	MER68|LTR|ERVL	5404	NM_032957	51750	Hs.434878	NM_016434	ENSG00000258366	RTEL1	C20orf41|NHL|RTEL|bK3184A7.3	regulator of telomere elongation helicase 1	protein-coding
chr19.3644477.-	chr19	3644477	3644478	-	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	17664	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr20.39987179.-	chr20	39987179	39987180	-	0	NA	"exon (NM_022896, exon 19 of 20)"	"exon (NM_022896, exon 19 of 20)"	-8319	NM_052846	90187	Hs.726525	NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
chr16.22943679.+	chr16	22943679	22943680	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	117819	NM_006043	9956	Hs.733610	NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chr17.79034741.-	chr17	79034741	79034742	-	0	NA	"intron (NM_017451, intron 3 of 14)"	AluSx|SINE|Alu	-25794	NM_006340	10458	Hs.128316	NM_001144888	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1-associated protein 2	protein-coding
chr6.13335704.-	chr6	13335704	13335705	-	0	NA	Intergenic	AluYa5|SINE|Alu	6917	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr17.26662682.-	chr17	26662682	26662683	-	0	NA	promoter-TSS (NM_174887)	promoter-TSS (NM_174887)	-134	NM_021137	7126	Hs.76090	NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	"tumor necrosis factor, alpha-induced protein 1 (endothelial)"	protein-coding
chr9.10787009.-	chr9	10787009	10787010	-	0	NA	Intergenic	AluYc3|SINE|Alu	174286	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr9.76965988.-	chr9	76965988	76965989	-	0	NA	Intergenic	AluSp|SINE|Alu	146264	NM_006914	6096	Hs.494178	NM_006914	ENSG00000198963	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
chr2.173941047.-	chr2	173941047	173941048	-	0	NA	"intron (NM_133646, intron 1 of 11)"	CpG	-482	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	ZAK	AZK|MLK7|MLT|MLTK|MRK|mlklak|pk	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chr17.1226050.+	chr17	1226050	1226051	+	0	NA	Intergenic	Intergenic	43093	NM_172367	286753	Hs.146059	NM_172367	ENSG00000184811	TUSC5	DSPB1|IFITMD3|LOST1	tumor suppressor candidate 5	protein-coding
chr9.90472355.-	chr9	90472355	90472356	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1616	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chr17.74632765.-	chr17	74632765	74632766	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7129	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr7.155159231.-	chr7	155159231	155159232	-	0	NA	Intergenic	SVA_E|Other|Other	-69745	NM_198337	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
chr16.84754482.-	chr16	84754482	84754483	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluY|SINE|Alu	-20927	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr16.10853153.+	chr16	10853153	10853154	+	0	NA	"intron (NM_002484, intron 7 of 10)"	"intron (NM_002484, intron 7 of 10)"	15455	NM_002484	4682	Hs.81469	NM_002484	ENSG00000103274	NUBP1	NBP|NBP1	nucleotide binding protein 1	protein-coding
chr12.116724256.+	chr12	116724256	116724257	+	0	NA	Intergenic	AluY|SINE|Alu	-9265	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
chr7.5396277.+	chr7	5396277	5396278	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66900	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr7.3018322.+	chr7	3018322	3018323	+	0	NA	"intron (NM_032415, intron 1 of 24)"	"intron (NM_032415, intron 1 of 24)"	65187	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BIMP3|CARMA1	"caspase recruitment domain family, member 11"	protein-coding
chr2.242512510.-	chr2	242512510	242512511	-	0	NA	"3' UTR (NM_032515, exon 5 of 5)"	"3' UTR (NM_032515, exon 5 of 5)"	13952	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr2.237068254.-	chr2	237068254	237068255	-	0	NA	Intergenic	CpG	-8398	NM_001485	2637	Hs.184945	NM_001485		GBX2	-	gastrulation brain homeobox 2	protein-coding
chr7.104040172.+	chr7	104040172	104040173	+	0	NA	"intron (NM_199000, intron 1 of 2)"	AluSg|SINE|Alu	71068	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
chr19.50803067.-	chr19	50803067	50803068	-	0	NA	"intron (NM_001145809, intron 39 of 42)"	AluSz|SINE|Alu	-29567	NM_004977	3748	Hs.467146	NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	"potassium voltage-gated channel, Shaw-related subfamily, member 3"	protein-coding
chrX.144902988.+	chrX	144902988	144902989	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	122	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr13.77954610.+	chr13	77954610	77954611	+	0	NA	Intergenic	AluSc|SINE|Alu	-53433	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	PAM	"MYC binding protein 2, E3 ubiquitin protein ligase"	protein-coding
chr17.72096299.+	chr17	72096299	72096300	+	0	NA	Intergenic	Intergenic	-103496	NM_000999	6169	Hs.629060	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding
chr1.197418620.-	chr1	197418620	197418621	-	0	NA	"intron (NR_047564, intron 11 of 11)"	AluY|SINE|Alu	-181286	NR_047564	23418	Hs.126135	NM_001193640	ENSG00000134376	CRB1	LCA8|RP12	crumbs homolog 1 (Drosophila)	protein-coding
chr16.341101.-	chr16	341101	341102	-	0	NA	"intron (NM_181050, intron 8 of 9)"	CpG	-7983	NM_006849	64714	Hs.66581	NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	"protein disulfide isomerase family A, member 2"	protein-coding
chr3.183052348.-	chr3	183052348	183052349	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81316	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr2.44468277.-	chr2	44468277	44468278	-	0	NA	Intergenic	AluSp|SINE|Alu	34320	NM_000341	6519	Hs.112916	NM_000341		SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	"solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1"	protein-coding
chr17.8252969.-	chr17	8252969	8252970	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9781	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr16.2174435.-	chr16	2174435	2174436	-	0	NA	"intron (NM_001009944, intron 1 of 45)"	"intron (NM_001009944, intron 1 of 45)"	8685	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	-	microRNA 4516	miscRNA
chr2.54950933.-	chr2	54950933	54950934	-	0	NA	Intergenic	CpG	1216	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
chr11.342943.+	chr11	342943	342944	+	0	NA	Intergenic	AluSz|SINE|Alu	-22029	NM_021034	10410	Hs.374650	NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
chr12.111714734.+	chr12	111714734	111714735	+	0	NA	"intron (NM_015267, intron 4 of 21)"	AluSx|SINE|Alu	92191	NM_001177996	144717	Hs.173088	NM_001177996	ENSG00000198324	FAM109A	IPIP27A|SES1	"family with sequence similarity 109, member A"	protein-coding
chr11.9352743.-	chr11	9352743	9352744	-	0	NA	Intergenic	Intergenic	16428	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chr1.116381485.+	chr1	116381485	116381486	+	0	NA	"intron (NM_001111061, intron 1 of 1)"	CpG	1848	NM_001111061	4808	Hs.46296	NM_001111061	ENSG00000177551	NHLH2	HEN2|NSCL2|bHLHa34	nescient helix loop helix 2	protein-coding
chr11.27528435.+	chr11	27528435	27528436	+	0	NA	promoter-TSS (NM_018362)	promoter-TSS (NM_018362)	36	NR_033313	497258	Hs.675323	NR_002832	ENSG00000245573	BDNF-AS	ANTI-BDNF|BDNF|BDNF-AS1|BDNFOS|NCRNA00049	BDNF antisense RNA	miscRNA
chr20.60624012.+	chr20	60624012	60624013	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16854	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr7.155656500.-	chr7	155656500	155656501	-	0	NA	Intergenic	Intergenic	51533	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
chr10.104255217.-	chr10	104255217	104255218	-	0	NA	"intron (NM_005736, intron 1 of 10)"	AluY|SINE|Alu	-7295	NM_005736	10121	Hs.153961	NM_005736	ENSG00000138107	ACTR1A	ARP1|CTRN1	"ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)"	protein-coding
chr2.20424106.-	chr2	20424106	20424107	-	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	-821	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr14.94606716.+	chr14	94606716	94606717	+	0	NA	Intergenic	Intergenic	-10759	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chr1.183741963.-	chr1	183741963	183741964	-	0	NA	"intron (NM_015149, intron 2 of 18)"	AluYb9|SINE|Alu	119515	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	"apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)"	protein-coding
chrX.53111686.-	chrX	53111686	53111687	-	0	NA	"exon (NM_022117, exon 1 of 7)"	"exon (NM_022117, exon 1 of 7)"	-144	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.6394558.-	chr16	6394558	6394559	-	0	NA	"intron (NM_001142333, intron 2 of 14)"	AluY|SINE|Alu	-325426	NM_018723	54715	Hs.459842	NM_001142333	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	"RNA binding protein, fox-1 homolog (C. elegans) 1"	protein-coding
chr18.12734569.-	chr18	12734569	12734570	-	0	NA	Intergenic	AluSx1|SINE|Alu	-31582	NM_020232	56984	Hs.464652	NM_020232		PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	"proteasome (prosome, macropain) assembly chaperone 2"	protein-coding
chr12.122709789.-	chr12	122709789	122709790	-	0	NA	"intron (NR_024600, intron 2 of 6)"	AluJb|SINE|Alu	-2279	NR_024601	56616	Hs.169611	NM_019887	ENSG00000184047	DIABLO	DFNA64|DIABLO-S|SMAC|SMAC3	"diablo, IAP-binding mitochondrial protein"	protein-coding
chr2.232260570.-	chr2	232260570	232260571	-	0	NA	"intron (NM_145236, intron 1 of 1)"	CpG	-235	NM_145236	93010	Hs.299329	NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7"	protein-coding
chr18.19632380.+	chr18	19632380	19632381	+	0	NA	Intergenic	AluSg4|SINE|Alu	-117024	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr10.32358176.-	chr10	32358176	32358177	-	0	NA	Intergenic	AluSg7|SINE|Alu	12805	NM_004521	3799	Hs.327736	NM_004521	ENSG00000170759	KIF5B	KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
chr10.77156180.-	chr10	77156180	77156181	-	0	NA	Intergenic	CpG	5106	NR_024421	100131213	Hs.534598	NR_024421		ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	miscRNA
chr3.93689473.+	chr3	93689473	93689474	+	0	NA	"intron (NM_000313, intron 1 of 14)"	AluJr|SINE|Alu	3461	NM_000313	5627	Hs.64016	NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
chr9.14830716.+	chr9	14830716	14830717	+	0	NA	"intron (NM_144966, intron 11 of 37)"	LTR9B|LTR|ERV1	-51185	NM_001177704	158326	Hs.50850	NM_001177704	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
chr19.47364600.+	chr19	47364600	47364601	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-10397	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|AP17-DELTA|CLAPS2|HHC3	"adaptor-related protein complex 2, sigma 1 subunit"	protein-coding
chr5.41712429.+	chr5	41712429	41712430	+	0	NA	Intergenic	AluY|SINE|Alu	158362	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA transferase 1	protein-coding
chr19.23474388.+	chr19	23474388	23474389	+	0	NA	Intergenic	AluSx|SINE|Alu	-41216	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chrX.100277479.-	chrX	100277479	100277480	-	0	NA	"intron (NM_001167970, intron 8 of 13)"	AluSz|SINE|Alu	-29626	NM_001167971	79979	Hs.496501	NM_001167970	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
chr6.162998489.-	chr6	162998489	162998490	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149675	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr1.1310580.-	chr1	1310580	1310581	-	0	NA	promoter-TSS (NM_001127229)	promoter-TSS (NM_001127229)	0	NM_001127229	54998	Hs.632515	NM_001127229	ENSG00000175756	AURKAIP1	AIP|AKIP	aurora kinase A interacting protein 1	protein-coding
chr9.11197033.+	chr9	11197033	11197034	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-584310	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr21.46907005.-	chr21	46907005	46907006	-	0	NA	"intron (NM_030582, intron 15 of 41)"	"intron (NM_030582, intron 15 of 41)"	-31581	NM_030582	80781	Hs.517356	NM_030582	ENSG00000182871	COL18A1	KNO|KNO1|KS	"collagen, type XVIII, alpha 1"	protein-coding
chrM.11224.-	chrM	11224	11225	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr19.9311231.-	chr19	9311231	9311232	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14316	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr9.135947015.-	chr9	135947015	135947016	-	0	NA	"exon (NM_001807, exon 11 of 11)"	"exon (NM_001807, exon 11 of 11)"	-9650	NM_001807	1056	Hs.533258	NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
chr12.50222193.-	chr12	50222193	50222194	-	0	NA	promoter-TSS (NR_027500)	promoter-TSS (NR_027500)	-15	NM_001037806	57701	Hs.143067	NM_001037806	ENSG00000167566	NCKAP5L	KIAA1602	NCK-associated protein 5-like	protein-coding
chr12.18580296.-	chr12	18580296	18580297	-	0	NA	"intron (NM_004570, intron 17 of 31)"	AluSq2|SINE|Alu	-165822	NM_004570	5288	Hs.22500	NM_004570	ENSG00000139144	PIK3C2G	PI3K-C2GAMMA	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma"	protein-coding
chr16.89740560.-	chr16	89740560	89740561	-	0	NA	Intergenic	Intergenic	12516	NM_001098533	8558	Hs.699177	NM_001098533	ENSG00000185324	CDK10	PISSLRE	cyclin-dependent kinase 10	protein-coding
chr4.49646735.+	chr4	49646735	49646736	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	658470	NM_025087	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
chrX.54269617.-	chrX	54269617	54269618	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59903	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr15.68514181.+	chr15	68514181	68514182	+	0	NA	"intron (NM_017882, intron 1 of 6)"	SVA_A|Other|Other	7899	NM_017882	54982	Hs.584921	NM_017882	ENSG00000128973	CLN6	CLN4A|HsT18960|nclf	"ceroid-lipofuscinosis, neuronal 6, late infantile, variant"	protein-coding
chr7.5062046.+	chr7	5062046	5062047	+	0	NA	Intergenic	AluY|SINE|Alu	-23406	NM_001204513	100533952	Hs.396178	NM_001204513	ENSG00000146587	RBAK-LOC389458	-	RBAK-LOC389458 readthrough	protein-coding
chr19.47747444.-	chr19	47747444	47747445	-	0	NA	Intergenic	CpG	11421	NM_001127242	27113	Hs.467020	NM_001127240	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
chr9.138443933.-	chr9	138443933	138443934	-	0	NA	Intergenic	Intergenic	-5948	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr5.179795664.+	chr5	179795664	179795665	+	0	NA	Intergenic	AluY|SINE|Alu	-15349	NM_005110	9945	Hs.696497	NM_005110	ENSG00000131459	GFPT2	GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
chr19.14156287.-	chr19	14156287	14156288	-	0	NA	"intron (NM_004843, intron 6 of 13)"	AluY|SINE|Alu	-13684	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
chr20.62108098.+	chr20	62108098	62108099	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4105	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr7.936471.-	chr7	936471	936472	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20280	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr9.107727039.-	chr9	107727039	107727040	-	0	NA	Intergenic	AluYa5|SINE|Alu	36512	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	"ATP-binding cassette, sub-family A (ABC1), member 1"	protein-coding
chr6.143858977.+	chr6	143858977	143858978	+	0	NA	Intergenic	AluSx3|SINE|Alu	24208	NR_027114	285740	Hs.432656	NR_027113		LOC285740	-	uncharacterized LOC285740	miscRNA
chrX.18365590.-	chrX	18365590	18365591	-	0	NA	"intron (NR_033717, intron 1 of 15)"	AluSz6|SINE|Alu	-7254	NM_006089	10389	Hs.495774	NM_006089	ENSG00000102098	SCML2	-	sex comb on midleg-like 2 (Drosophila)	protein-coding
chr3.38459400.+	chr3	38459400	38459401	+	0	NA	Intergenic	Intergenic	-36390	NM_001106	93	Hs.174273	NM_001106		ACVR2B	ACTRIIB|ActR-IIB|HTX4	"activin A receptor, type IIB"	protein-coding
chr1.110881069.+	chr1	110881069	110881070	+	0	NA	promoter-TSS (NM_001201545)	promoter-TSS (NM_001201545)	724	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	miscRNA
chr12.132372596.-	chr12	132372596	132372597	-	0	NA	Intergenic	AluSx|SINE|Alu	6683	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr14.83280573.-	chr14	83280573	83280574	-	0	NA	Intergenic	SVA_D|Other|Other	1280368	NM_005065	6400	Hs.181300	NM_001244984	ENSG00000071537	SEL1L	PRO1063|SEL1-LIKE|SEL1L1	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chr8.67617948.+	chr8	67617948	67617949	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluY|SINE|Alu	-6705	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr13.114899248.+	chr13	114899248	114899249	+	0	NA	Intergenic	Intergenic	-1153	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr15.91370855.-	chr15	91370855	91370856	-	0	NA	Intergenic	AluSz|SINE|Alu	41030	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr13.50177073.+	chr13	50177073	50177074	+	0	NA	Intergenic	AluY|SINE|Alu	-17354	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RP11-185C18.1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
chr6.168219489.+	chr6	168219489	168219490	+	0	NA	Intergenic	AluSp|SINE|Alu	7987	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr7.5570039.+	chr7	5570039	5570040	+	0	NA	"intron (NM_001101, intron 1 of 5)"	CpG-23985	193	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	"actin, beta"	protein-coding
chr16.443675.-	chr16	443675	443676	-	0	NA	TTS (NR_024453)	TTS (NR_024453)	3517	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr5.128197026.-	chr5	128197026	128197027	-	0	NA	Intergenic	AluYk4|SINE|Alu	104184	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chr16.89034072.-	chr16	89034072	89034073	-	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	-9432	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr5.14460435.-	chr5	14460435	14460436	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121456	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr2.236444669.-	chr2	236444669	236444670	-	0	NA	"intron (NM_001037131, intron 1 of 17)"	"intron (NM_001037131, intron 1 of 17)"	-41936	NM_001244888	116987	Hs.435039	NM_001037131	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1"	protein-coding
chr5.3188279.+	chr5	3188279	3188280	+	0	NA	Intergenic	CpG	347929	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr19.36128487.-	chr19	36128487	36128488	-	0	NA	TTS (NM_024321)	TTS (NM_024321)	4160	NM_014209	2116	Hs.194061	NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ets variant 2	protein-coding
chr6.43016761.-	chr6	43016761	43016762	-	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	-4922	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr16.66461376.-	chr16	66461376	66461377	-	0	NA	"intron (NM_001136106, intron 1 of 3)"	CpG	-176	NM_001178020	146227	Hs.740219	NM_001136106	ENSG00000166546	BEAN1	BEAN|SCA31	"brain expressed, associated with NEDD4, 1"	protein-coding
chr22.24236457.+	chr22	24236457	24236458	+	0	NA	promoter-TSS (NM_002415)	promoter-TSS (NM_002415)	-108	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr1.181058723.-	chr1	181058723	181058724	-	0	NA	"exon (NM_016545, exon 1 of 1)"	"exon (NM_016545, exon 1 of 1)"	-1085	NM_016545	51278	Hs.730689	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
chr17.47363950.+	chr17	47363950	47363951	+	0	NA	Intergenic	AluSx|SINE|Alu	38345	NR_034161	124871	Hs.446890	NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	miscRNA
chrX.81762808.-	chrX	81762808	81762809	-	0	NA	Intergenic	AluY|SINE|Alu	1000461	NM_000307	5456	Hs.2229	NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
chrM.1741.-	chrM	1741	1742	-	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr16.53227235.-	chr16	53227235	53227236	-	0	NA	"intron (NM_025134, intron 2 of 38)"	AluY|SINE|Alu	-138290	NM_025134	80205	Hs.622347	NM_025134	ENSG00000177200	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
chr20.34893945.+	chr20	34893945	34893946	+	0	NA	Intergenic	CpG	69606	NM_001271874	25980	Hs.744306	NM_001271874	ENSG00000131043	AAR2	C20orf4	AAR2 splicing factor homolog (S. cerevisiae)	protein-coding
chr2.47661312.-	chr2	47661312	47661313	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-31106	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr7.12736923.+	chr7	12736923	12736924	+	0	NA	Intergenic	AluSg|SINE|Alu	10012	NM_005738	10124	Hs.245540	NM_001037164	ENSG00000122644	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
chr6.15189320.-	chr6	15189320	15189321	-	0	NA	Intergenic	SVA_F|Other|Other	56886	NM_004973	3720	Hs.269059	NM_001267040	ENSG00000008083	JARID2	JMJ	"jumonji, AT rich interactive domain 2"	protein-coding
chr9.719235.-	chr9	719235	719236	-	0	NA	"intron (NM_001256876, intron 7 of 15)"	AluSx3|SINE|Alu	-12429	NM_153186	23189	Hs.306764	NM_001256876	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
chr16.89707694.+	chr16	89707694	89707695	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-16458	NM_153025	124045	Hs.655171	NM_001271907	ENSG00000167523	C16orf55	-	chromosome 16 open reading frame 55	protein-coding
chr9.120507383.-	chr9	120507383	120507384	-	0	NA	Intergenic	CpG	-40930	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr3.77641987.+	chr3	77641987	77641988	+	0	NA	"intron (NM_002942, intron 17 of 25)"	AluSg4|SINE|Alu	494824	NM_001128929	6092	Hs.13305	NM_001128929	ENSG00000185008	ROBO2	SAX3	"roundabout, axon guidance receptor, homolog 2 (Drosophila)"	protein-coding
chr2.38595129.-	chr2	38595129	38595130	-	0	NA	"intron (NM_022374, intron 1 of 12)"	AluY|SINE|Alu	-9303	NM_022374	64225	Hs.727652	NM_001135673	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
chr12.129892200.-	chr12	129892200	129892201	-	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	-496012	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr6.88118002.-	chr6	88118002	88118003	-	0	NA	"intron (NM_001031743, intron 1 of 12)"	CpG	-312	NM_001031743	154313	Hs.82921	NM_178823	ENSG00000213204	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
chr18.63211154.-	chr18	63211154	63211155	-	0	NA	Intergenic	AluY|SINE|Alu	206334	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr19.45660342.+	chr19	45660342	45660343	+	0	NA	"intron (NM_198478, intron 2 of 3)"	L2a|LINE|L2	3066	NM_198478	284353	Hs.299256	NM_198478	ENSG00000179846	NKPD1	-	"NTPase, KAP family P-loop domain containing 1"	protein-coding
chr10.69822275.-	chr10	69822275	69822276	-	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	-12828	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr18.14856577.-	chr18	14856577	14856578	-	0	NA	Intergenic	SVA_F|Other|Other	-26412	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	miscRNA
chr4.4872151.+	chr4	4872151	4872152	+	0	NA	Intergenic	Intergenic	10759	NM_002448	4487	Hs.424414	NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
chr5.12186498.+	chr5	12186498	12186499	+	0	NA	Intergenic	Intergenic	-282388	NM_001332	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	"catenin (cadherin-associated protein), delta 2"	protein-coding
chr19.9311233.-	chr19	9311233	9311234	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14314	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr19.6502332.-	chr19	6502332	6502333	-	0	NA	promoter-TSS (NM_006087)	promoter-TSS (NM_006087)	2	NM_006087	10382	Hs.110837	NM_006087	ENSG00000104833	TUBB4A	TUBB4|TUBB5|beta-5	"tubulin, beta 4A class IVa"	protein-coding
chr3.15431319.-	chr3	15431319	15431320	-	0	NA	Intergenic	AluSp|SINE|Alu	-37723	NM_152396	131965	Hs.149487	NM_152396		METTL6	-	methyltransferase like 6	protein-coding
chr19.12151154.-	chr19	12151154	12151155	-	0	NA	Intergenic	AluY|SINE|Alu	4629	NM_001080411	163059	Hs.667776	NM_001080411	ENSG00000197647	ZNF433	-	zinc finger protein 433	protein-coding
chr15.86338219.-	chr15	86338219	86338220	-	0	NA	promoter-TSS (NM_022480)	promoter-TSS (NM_022480)	30	NM_022480	64410	Hs.498371	NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch-like family member 25	protein-coding
chr9.37120691.+	chr9	37120691	37120692	+	0	NA	"intron (NM_032226, intron 1 of 8)"	CpG	222	NM_032226	84186	Hs.654700	NM_032226	ENSG00000147905	ZCCHC7	AIR1|RP11-397D12.1	"zinc finger, CCHC domain containing 7"	protein-coding
chr7.116502506.+	chr7	116502506	116502507	+	0	NA	promoter-TSS (NM_006136)	promoter-TSS (NM_006136)	-57	NM_006136	830	Hs.446123	NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	"capping protein (actin filament) muscle Z-line, alpha 2"	protein-coding
chr13.114446698.+	chr13	114446698	114446699	+	0	NA	Intergenic	Intergenic	7364	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	miscRNA
chr11.79149980.+	chr11	79149980	79149981	+	0	NA	"intron (NM_001098816, intron 1 of 33)"	CpG	1715	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
chr18.54318526.+	chr18	54318526	54318527	+	0	NA	promoter-TSS (NM_052834)	promoter-TSS (NM_052834)	-90	NM_015285	23335	Hs.465213	NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
chr10.101379892.+	chr10	101379892	101379893	+	0	NA	"exon (NM_031212, exon 1 of 4)"	"exon (NM_031212, exon 1 of 4)"	329	NM_031212	81894	Hs.403790	NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L	"solute carrier family 25 (mitochondrial iron transporter), member 28"	protein-coding
chr16.29937495.+	chr16	29937495	29937496	+	0	NA	promoter-TSS (NM_178863)	promoter-TSS (NM_178863)	50	NM_178863	253980	Hs.534590	NM_178863	ENSG00000174943	KCTD13	PDIP1|POLDIP1|hBACURD1	potassium channel tetramerisation domain containing 13	protein-coding
chr2.50825272.+	chr2	50825272	50825273	+	0	NA	"intron (NM_004801, intron 8 of 21)"	AluSx1|SINE|Alu	-250378	NM_138735	9378	Hs.637685	NM_001135659	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
chr9.138959046.+	chr9	138959046	138959047	+	0	NA	"intron (NM_144653, intron 1 of 5)"	AluSp|SINE|Alu	28085	NM_144653	138151	Hs.736561	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31	"NACC family member 2, BEN and BTB (POZ) domain containing"	protein-coding
chr14.105158950.+	chr14	105158950	105158951	+	0	NA	"intron (NM_032714, intron 1 of 4)"	"intron (NM_032714, intron 1 of 4)"	3007	NM_022489	64423	Hs.24956	NM_001031714	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	"inverted formin, FH2 and WH2 domain containing"	protein-coding
chr7.469030.-	chr7	469030	469031	-	0	NA	Intergenic	Intergenic	-49639	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	miscRNA
chr1.113385405.-	chr1	113385405	113385406	-	0	NA	Intergenic	AluSx|SINE|Alu	80567	NR_002796	246182	Hs.647691	NR_002796		AKR7A2P1	AFARP1	"aldo-keto reductase family 7, member A2 pseudogene 1"	pseudo
chr22.20860435.+	chr22	20860435	20860436	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1451	NM_001003891	51586	Hs.517421	NM_001003891	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
chr16.31103079.+	chr16	31103079	31103080	+	0	NA	"intron (NM_206824, intron 1 of 1)"	AluSq|SINE|Alu	-2949	NM_001039503	339105	Hs.569575	NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	"protease, serine, 53"	protein-coding
chr15.63229215.+	chr15	63229215	63229216	+	0	NA	Intergenic	AluSp|SINE|Alu	-105623	NM_001018006	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA	tropomyosin 1 (alpha)	protein-coding
chrX.54269611.-	chrX	54269611	54269612	-	0	NA	"intron (NM_001002838, intron 17 of 22)"	AluYk4|SINE|Alu	59897	NM_017848	54954	Hs.86045	NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
chr17.78977915.+	chr17	78977915	78977916	+	0	NA	Intergenic	CpG	12274	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
chr2.242500493.+	chr2	242500493	242500494	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1935	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr16.71647809.+	chr16	71647809	71647810	+	0	NA	Intergenic	AluSz|SINE|Alu	-12247	NM_001271329	91862	Hs.513706	NM_001017967	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
chr12.32064888.+	chr12	32064888	32064889	+	0	NA	Intergenic	AluY|SINE|Alu	-47465	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chr7.64349799.+	chr7	64349799	64349800	+	0	NA	Intergenic	CpG	-13821	NR_003099	10793	Hs.520889	NM_021148		ZNF273	HZF9	zinc finger protein 273	protein-coding
chr1.97228934.+	chr1	97228934	97228935	+	0	NA	"intron (NM_021190, intron 3 of 13)"	SVA_D|Other|Other	41759	NM_021190	58155	Hs.743449	NM_021190	ENSG00000117569	PTBP2	PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8	polypyrimidine tract binding protein 2	protein-coding
chr14.105134415.-	chr14	105134415	105134416	-	0	NA	Intergenic	AluSz|SINE|Alu	-9671	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	-	microRNA 4710	miscRNA
chr7.1156324.+	chr7	1156324	1156325	+	0	NA	"intron (NM_032350, intron 2 of 4)"	CpG	21569	NM_032350	84310	Hs.732316	NM_001134395	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
chrX.46794134.-	chrX	46794134	46794135	-	0	NA	"intron (NM_014735, intron 1 of 10)"	AluSx|SINE|Alu	-22266	NM_014735	9767	Hs.371977	NM_001077445	ENSG00000102221	PHF16	JADE3	PHD finger protein 16	protein-coding
chr9.2673175.+	chr9	2673175	2673176	+	0	NA	Intergenic	AluSc8|SINE|Alu	-44351	NM_133497	169522	Hs.740173	NM_133497	ENSG00000168263	KCNV2	KV11.1|Kv8.2|RCD3B	"potassium channel, subfamily V, member 2"	protein-coding
chr11.64391574.+	chr11	64391574	64391575	+	0	NA	"intron (NM_138732, intron 17 of 19)"	"intron (NM_138732, intron 17 of 19)"	19213	NM_138734	9379	Hs.372938	NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
chr1.153961781.-	chr1	153961781	153961782	-	0	NA	Intergenic	AluY|SINE|Alu	1458	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr5.170878219.-	chr5	170878219	170878220	-	0	NA	"intron (NM_003862, intron 4 of 4)"	C-rich|Low_complexity|Low_complexity	-31552	NM_003862	8817	Hs.87191	NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
chr8.110703618.-	chr8	110703618	110703619	-	0	NA	"5' UTR (NM_001099743, exon 1 of 8)"	"5' UTR (NM_001099743, exon 1 of 8)"	-402	NM_001099744	55638	Hs.390738	NM_001099743	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
chr11.100596539.-	chr11	100596539	100596540	-	0	NA	"intron (NM_152432, intron 1 of 23)"	AluY|SINE|Alu	-38132	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
chr11.18743322.-	chr11	18743322	18743323	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4455	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr3.185552092.-	chr3	185552092	185552093	-	0	NA	Intergenic	AluYa5|SINE|Alu	9265	NM_001007225	10644	Hs.35354	NM_001007225	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2|p62	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
chr19.48836580.-	chr19	48836580	48836581	-	0	NA	"exon (NM_018273, exon 8 of 8)"	"exon (NM_018273, exon 8 of 8)"	-7951	NM_001425	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding
chr1.158012603.-	chr1	158012603	158012604	-	0	NA	"intron (NM_018240, intron 1 of 14)"	AluY|SINE|Alu	-49540	NM_018240	55243	Hs.657006	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
chr6.43016779.-	chr6	43016779	43016780	-	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	-4904	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr10.134216451.-	chr10	134216451	134216452	-	0	NA	"intron (NM_001098637, intron 1 of 2)"	"intron (NM_001098637, intron 1 of 2)"	-5749	NM_001098637	170394	Hs.527751	NM_001098637	ENSG00000171813	PWWP2B	PWWP2|RP11-273H7.1|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
chr16.181425.-	chr16	181425	181426	-	0	NA	"intron (NM_001243247, intron 2 of 14)"	AluY|SINE|Alu	-7272	NM_001243248	8131	Hs.19699	NM_001039476	ENSG00000103148	NPRL3	C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11	nitrogen permease regulator-like 3 (S. cerevisiae)	protein-coding
chr15.25149767.+	chr15	25149767	25149768	+	0	NA	"intron (NM_022807, intron 3 of 12)"	AluSx|SINE|Alu	48069	NM_022805	6638	Hs.743549	NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
chr8.41166053.+	chr8	41166053	41166054	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	937	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr19.45678473.+	chr19	45678473	45678474	+	0	NA	"intron (NM_001270891, intron 1 of 5)"	AluY|SINE|Alu	3028	NM_001270891	79090	Hs.466929	NM_001270891	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
chr7.32338047.+	chr7	32338047	32338048	+	0	NA	"intron (NM_001191058, intron 1 of 18)"	CpG	336	NM_001191058	5137	Hs.728862	NM_001191056	ENSG00000154678	PDE1C	Hcam3	"phosphodiesterase 1C, calmodulin-dependent 70kDa"	protein-coding
chr18.70912361.-	chr18	70912361	70912362	-	0	NA	"intron (NR_034133, intron 2 of 5)"	AluY|SINE|Alu	-19372	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	miscRNA
chr8.41583365.-	chr8	41583365	41583366	-	0	NA	"exon (NM_000037, exon 6 of 43)"	"exon (NM_000037, exon 6 of 43)"	60561	NM_020480	286	Hs.708861	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	"ankyrin 1, erythrocytic"	protein-coding
chr15.92290043.-	chr15	92290043	92290044	-	0	NA	Intergenic	AluY|SINE|Alu	106895	NM_001145044	28232	Hs.311187	NM_001145044	ENSG00000176463	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	"solute carrier organic anion transporter family, member 3A1"	protein-coding
chr8.609230.-	chr8	609230	609231	-	0	NA	Intergenic	Intergenic	-71996	NM_207332	157697	Hs.655310	NM_207332	ENSG00000104714	ERICH1	-	glutamate-rich 1	protein-coding
chr22.30781357.+	chr22	30781357	30781358	+	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	1945	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr2.136633773.+	chr2	136633773	136633774	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	274	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr11.68855397.+	chr11	68855397	68855398	+	0	NA	"exon (NM_139075, exon 25 of 25)"	"exon (NM_139075, exon 25 of 25)"	39047	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
chrX.152661576.-	chrX	152661576	152661577	-	0	NA	Intergenic	Intergenic	22205	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
chr1.217314037.+	chr1	217314037	217314038	+	0	NA	Intergenic	Intergenic	-2940	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr16.31449013.-	chr16	31449013	31449014	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5335	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr17.1389867.-	chr17	1389867	1389868	-	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	816	NM_001080950	4641	Hs.286226	NM_001080779	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
chr12.49479716.+	chr12	49479716	49479717	+	0	NA	Intergenic	AluSq|SINE|Alu	8886	NM_021044	50846	Hs.524382	NM_021044	ENSG00000139549	DHH	GDXYM|HHG-3|SRXY7	desert hedgehog	protein-coding
chr6.35497051.-	chr6	35497051	35497052	-	0	NA	Intergenic	AluSp|SINE|Alu	16404	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
chr15.100514147.+	chr15	100514147	100514148	+	0	NA	"3' UTR (NM_139057, exon 22 of 22)"	"3' UTR (NM_139057, exon 22 of 22)"	-167015	NR_003260	196968	Hs.585319	NR_003260	ENSG00000182397	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
chr13.112726530.+	chr13	112726530	112726531	+	0	NA	TTS (NM_005986)	TTS (NM_005986)	4617	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr8.3825569.-	chr8	3825569	3825570	-	0	NA	"intron (NM_033225, intron 5 of 69)"	AluY|SINE|Alu	-1026759	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
chr3.42642406.-	chr3	42642406	42642407	-	0	NA	"intron (NM_005385, intron 1 of 16)"	CpG	-166	NM_001201572	9117	Hs.445892	NM_001201572	ENSG00000093183	SEC22C	SEC22L3	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	protein-coding
chr18.55790672.+	chr18	55790672	55790673	+	0	NA	"intron (NM_001144964, intron 1 of 30)"	L2b|LINE|L2	-25893	NM_001144969	23327	Hs.185677	NM_001144964	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	"neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase"	protein-coding
chr19.1584813.+	chr19	1584813	1584814	+	0	NA	"intron (NM_003926, intron 2 of 5)"	CpG-12283	7839	NM_003926	53615	Hs.178728	NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
chr18.73357760.-	chr18	73357760	73357761	-	0	NA	Intergenic	L2|LINE|L2	218171	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
chr1.218165385.-	chr1	218165385	218165386	-	0	NA	Intergenic	AluSq|SINE|Alu	-99143	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr17.21117724.+	chr17	21117724	21117725	+	0	NA	"non-coding (NR_024547, exon 1 of 3)"	"non-coding (NR_024547, exon 1 of 3)"	184	NR_024547	8834	Hs.592945	NM_003876		TMEM11	C17orf35|PM1|PMI	transmembrane protein 11	protein-coding
chr3.126702430.-	chr3	126702430	126702431	-	0	NA	Intergenic	CpG	5007	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
chr19.41694496.+	chr19	41694496	41694497	+	0	NA	Intergenic	AluY|SINE|Alu	-4619	NM_030622	29785	Hs.98370	NM_030622	ENSG00000167600	CYP2S1	-	"cytochrome P450, family 2, subfamily S, polypeptide 1"	protein-coding
chr9.35658515.-	chr9	35658515	35658516	-	0	NA	promoter-TSS (NR_003051)	promoter-TSS (NR_003051)	-228	NM_174923	203260	Hs.534579	NM_001195200	ENSG00000159884	CCDC107	PSEC0222	coiled-coil domain containing 107	protein-coding
chr2.183903195.+	chr2	183903195	183903196	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	34	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr3.194483975.+	chr3	194483975	194483976	+	0	NA	"intron (NR_037891, intron 3 of 3)"	AluSx|SINE|Alu	54825	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	miscRNA
chr3.1900267.-	chr3	1900267	1900268	-	0	NA	Intergenic	AluSp|SINE|Alu	240283	NM_175607	152330	Hs.626418	NM_001206955	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
chr3.191638135.+	chr3	191638135	191638136	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	459183	NM_001083308	152138	Hs.690618	NM_001083308	ENSG00000253548	PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding
chr21.31598719.+	chr21	31598719	31598720	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10250	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr11.113665980.-	chr11	113665980	113665981	-	0	NA	Intergenic	AluSx|SINE|Alu	-15462	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr18.14147143.-	chr18	14147143	14147144	-	0	NA	Intergenic	Intergenic	14654	NR_033354	162655	Hs.352635	NM_145287		ZNF519	HsT2362	zinc finger protein 519	protein-coding
chr22.51043086.+	chr22	51043086	51043087	+	0	NA	"exon (NM_016431, exon 3 of 10)"	"exon (NM_016431, exon 3 of 10)"	1524	NM_016431	23542	Hs.558180	NM_012324	ENSG00000008735	MAPK8IP2	IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
chr9.131293123.-	chr9	131293123	131293124	-	0	NA	"intron (NM_001003722, intron 9 of 15)"	AluYk4|SINE|Alu	21714	NM_001130438	6709	Hs.372331	NM_001130438	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	"spectrin, alpha, non-erythrocytic 1"	protein-coding
chr7.158790510.+	chr7	158790510	158790511	+	0	NA	Intergenic	Intergenic	-10535	NR_024394	154822	Hs.667767	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	miscRNA
chr11.27384733.+	chr11	27384733	27384734	+	0	NA	promoter-TSS (NM_080654)	promoter-TSS (NM_080654)	62	NM_030771	91057	Hs.143733	NM_030771	ENSG00000109881	CCDC34	NY-REN-41|RAMA3	coiled-coil domain containing 34	protein-coding
chr16.1115475.+	chr16	1115475	1115476	+	0	NA	"non-coding (NR_027242, exon 4 of 4)"	"non-coding (NR_027242, exon 4 of 4)"	-7281	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr10.71044927.-	chr10	71044927	71044928	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15171	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr17.810090.-	chr17	810090	810091	-	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	42739	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr12.84197219.+	chr12	84197219	84197220	+	0	NA	Intergenic	AluY|SINE|Alu	1109389	NM_018057	55117	Hs.44424	NM_001146335	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	"solute carrier family 6 (neutral amino acid transporter), member 15"	protein-coding
chr1.160239877.-	chr1	160239877	160239878	-	0	NA	Intergenic	AluJo|SINE|Alu	7527	NM_015726	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
chr19.2432917.+	chr19	2432917	2432918	+	0	NA	"intron (NM_032737, intron 8 of 11)"	CpG	-5042	NM_012458	26517	Hs.75056	NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13 homolog (yeast)	protein-coding
chr2.213546628.+	chr2	213546628	213546629	+	0	NA	Intergenic	AluSc8|SINE|Alu	-143276	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chrX.29584333.-	chrX	29584333	29584334	-	0	NA	"intron (NM_014271, intron 5 of 10)"	AluY|SINE|Alu	649342	NM_002364	4113	Hs.113824	NM_002364	ENSG00000099399	MAGEB2	CT3.2|DAM6|MAGE-XP-2	"melanoma antigen family B, 2"	protein-coding
chr12.100804236.+	chr12	100804236	100804237	+	0	NA	"intron (NM_001145288, intron 8 of 10)"	AluY|SINE|Alu	53379	NM_001145288	246213	Hs.116871	NM_001145288	ENSG00000179520	SLC17A8	DFNA25|VGLUT3	"solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8"	protein-coding
chr13.21644839.+	chr13	21644839	21644840	+	0	NA	Intergenic	AluSx|SINE|Alu	-9117	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr17.33046670.+	chr17	33046670	33046671	+	0	NA	Intergenic	Intergenic	138902	NM_207313	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	-	transmembrane protein 132E	protein-coding
chr2.242500464.+	chr2	242500464	242500465	+	0	NA	"intron (NM_032515, intron 2 of 4)"	"intron (NM_032515, intron 2 of 4)"	-1906	NR_033346	100379249	Hs.621128	NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	miscRNA
chr3.13876344.+	chr3	13876344	13876345	+	0	NA	"intron (NM_004625, intron 3 of 3)"	L2a|LINE|L2	45274	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	"wingless-type MMTV integration site family, member 7A"	protein-coding
chr9.90472354.-	chr9	90472354	90472355	-	0	NA	TTS (NR_040117)	TTS (NR_040117)	-1617	NR_040117	392364	Hs.742401	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
chr22.24621458.+	chr22	24621458	24621459	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19652	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr17.3290558.-	chr17	3290558	3290559	-	0	NA	Intergenic	AluSx1|SINE|Alu	-11146	NM_003553	8387	Hs.278485	NM_003553		OR1E1	HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547	"olfactory receptor, family 1, subfamily E, member 1"	protein-coding
chr5.89746548.+	chr5	89746548	89746549	+	0	NA	Intergenic	AluSz|SINE|Alu	24037	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr16.632086.+	chr16	632086	632087	+	0	NA	"intron (NM_148920, intron 9 of 9)"	"intron (NM_148920, intron 9 of 9)"	-7271	NM_001172663	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr20.18441235.-	chr20	18441235	18441236	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6594	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr2.202898665.-	chr2	202898665	202898666	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	645	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr16.440478.-	chr16	440478	440479	-	0	NA	"intron (NR_024453, intron 2 of 2)"	AluY|SINE|Alu	6714	NM_005009	4833	Hs.9235	NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
chr10.134429689.+	chr10	134429689	134429690	+	0	NA	"intron (NM_005539, intron 2 of 15)"	"intron (NM_005539, intron 2 of 15)"	78336	NM_005539	3632	Hs.715308	NM_005539	ENSG00000068383	INPP5A	5PTASE	"inositol polyphosphate-5-phosphatase, 40kDa"	protein-coding
chr8.144124776.-	chr8	144124776	144124777	-	0	NA	"intron (NM_173687, intron 3 of 5)"	"intron (NM_173687, intron 3 of 5)"	-4097	NM_173687	286122	Hs.660382	NM_173687	ENSG00000177335	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
chr14.76577626.+	chr14	76577626	76577627	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40633	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr18.13095676.+	chr18	13095676	13095677	+	0	NA	"exon (NM_032142, exon 35 of 45)"	"exon (NM_032142, exon 35 of 45)"	104315	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr7.44582150.+	chr7	44582150	44582151	+	0	NA	Intergenic	Intergenic	-1236	NM_001101648	29881	Hs.567486	NM_001101648	ENSG00000015520	NPC1L1	NPC11L1	NPC1-like 1	protein-coding
chrX.53808315.+	chrX	53808315	53808316	+	0	NA	Intergenic	AluYb8|SINE|Alu	-94618	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	"HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase"	protein-coding
chr20.39978520.-	chr20	39978520	39978521	-	0	NA	"exon (NM_022896, exon 6 of 20)"	"exon (NM_022896, exon 6 of 20)"	-8960	NM_022896	64900	Hs.25897	NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2	lipin 3	protein-coding
chr22.40851513.-	chr22	40851513	40851514	-	0	NA	"intron (NM_020831, intron 4 of 14)"	AluY|SINE|Alu	-84918	NM_015705	27352	Hs.474914	NM_015705	ENSG00000100359	SGSM3	MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5	small G protein signaling modulator 3	protein-coding
chr12.56394838.-	chr12	56394838	56394839	-	0	NA	"intron (NM_000456, intron 3 of 5)"	AluY|SINE|Alu	-3795	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
chr16.89331777.-	chr16	89331777	89331778	-	0	NA	Intergenic	Intergenic	-47666	NM_182531	197320	Hs.647385	NM_001201407	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
chr11.77200938.+	chr11	77200938	77200939	+	0	NA	Intergenic	SVA_D|Other|Other	-15830	NM_001128620	5058	Hs.435714	NM_001128620	ENSG00000149269	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chr1.28207917.+	chr1	28207917	28207918	+	0	NA	"intron (NM_004848, intron 3 of 4)"	AluY|SINE|Alu	8862	NM_001039477	9473	Hs.10649	NM_001039477	ENSG00000130775	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
chr2.240402085.+	chr2	240402085	240402086	+	0	NA	Intergenic	Intergenic	-79442	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr1.178911166.-	chr1	178911166	178911167	-	0	NA	Intergenic	Intergenic	70951	NM_004673	9068	Hs.591474	NM_004673	ENSG00000116194	ANGPTL1	ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2	angiopoietin-like 1	protein-coding
chr20.35737811.-	chr20	35737811	35737812	-	0	NA	"intron (NM_152503, intron 21 of 23)"	AluSq10|SINE|Alu	13401	NM_183404	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding
chr2.122878829.-	chr2	122878829	122878830	-	0	NA	Intergenic	AluY|SINE|Alu	-365708	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr1.6009873.+	chr1	6009873	6009874	+	0	NA	"intron (NM_015102, intron 7 of 29)"	"intron (NM_015102, intron 7 of 29)"	-42485	NM_001199861	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr7.38431501.-	chr7	38431501	38431502	-	0	NA	"exon (NM_001635, exon 19 of 21)"	"exon (NM_001635, exon 19 of 21)"	-50323	NR_040085	100506776	Hs.173034	NR_040085		LOC100506776	-	uncharacterized LOC100506776	miscRNA
chrY.9930521.-	chrY	9930521	9930522	-	0	NA	Intergenic	5S|rRNA|rRNA	-182114	NR_001540	252955	Hs.741140	NR_001540	ENSG00000239225	TTTY23	NCRNA00148	"testis-specific transcript, Y-linked 23 (non-protein coding)"	miscRNA
chr3.32766060.-	chr3	32766060	32766061	-	0	NA	"intron (NR_046352, intron 7 of 16)"	AluY|SINE|Alu	-29027	NM_001256742	25904	Hs.444851	NM_001256741	ENSG00000182973	CNOT10	-	"CCR4-NOT transcription complex, subunit 10"	protein-coding
chr10.18781313.-	chr10	18781313	18781314	-	0	NA	"intron (NM_001167945, intron 3 of 13)"	AluSz6|SINE|Alu	-91800	NM_201570	783	Hs.59093	NM_000724	ENSG00000165995	CACNB2	CACNLB2|CAVB2|MYSB	"calcium channel, voltage-dependent, beta 2 subunit"	protein-coding
chr19.41641968.+	chr19	41641968	41641969	+	0	NA	Intergenic	CpG	21615	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr14.51521358.+	chr14	51521358	51521359	+	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	41064	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr18.43723292.+	chr18	43723292	43723293	+	0	NA	Intergenic	AluY|SINE|Alu	-30696	NM_001008239	147339	Hs.116486	NM_001008239	ENSG00000152242	C18orf25	ARKL1	chromosome 18 open reading frame 25	protein-coding
chrX.53123352.+	chrX	53123352	53123353	+	0	NA	Intergenic	CpG	11810	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr8.57184593.+	chr8	57184593	57184594	+	0	NA	Intergenic	SVA_D|Other|Other	48648	NM_138969	195814	Hs.170673	NM_138969		SDR16C5	RDH#2|RDH-E2|RDHE2	"short chain dehydrogenase/reductase family 16C, member 5"	protein-coding
chr3.152869761.+	chr3	152869761	152869762	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10268	NM_002886	5912	Hs.98643	NM_002886	ENSG00000181467	RAP2B	-	"RAP2B, member of RAS oncogene family"	protein-coding
chr10.94709452.-	chr10	94709452	94709453	-	0	NA	"intron (NM_001013848, intron 14 of 21)"	AluSq2|SINE|Alu	-101227	NM_019053	54536	Hs.655657	NM_001013848	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
chr17.43255901.-	chr17	43255901	43255902	-	0	NA	Intergenic	AluY|SINE|Alu	-17637	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr20.62108074.-	chr20	62108074	62108075	-	0	NA	Intergenic	AluSq2|SINE|Alu	4081	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr18.13095642.+	chr18	13095642	13095643	+	0	NA	"exon (NM_032142, exon 35 of 45)"	"exon (NM_032142, exon 35 of 45)"	104281	NM_032142	55125	Hs.100914	NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
chr5.10118886.-	chr5	10118886	10118887	-	0	NA	Intergenic	AluSp|SINE|Alu	-131135	NR_047669	134145	Hs.481569	NM_001258388		FAM173B	JS-2	"family with sequence similarity 173, member B"	protein-coding
chr10.120946156.+	chr10	120946156	120946157	+	0	NA	Intergenic	AluY|SINE|Alu	-7811	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr19.18180379.-	chr19	18180379	18180380	-	0	NA	TTS (NM_153701)	TTS (NM_153701)	-17318	NM_153701	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB	"interleukin 12 receptor, beta 1"	protein-coding
chr1.100493696.-	chr1	100493696	100493697	-	0	NA	Intergenic	AluSx|SINE|Alu	10093	NM_033055	64645	Hs.124156	NM_033055	ENSG00000156875	HIAT1	-	hippocampus abundant transcript 1	protein-coding
chr10.126538778.-	chr10	126538778	126538779	-	0	NA	Intergenic	AluSx|SINE|Alu	-48424	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	FAM175B	ABRO1|KIAA0157	"family with sequence similarity 175, member B"	protein-coding
chr2.239058195.+	chr2	239058195	239058196	+	0	NA	"intron (NM_198582, intron 7 of 7)"	"intron (NM_198582, intron 7 of 7)"	10832	NM_198582	377007	Hs.591595	NM_198582	ENSG00000168427	KLHL30	-	kelch-like family member 30	protein-coding
chr4.185174114.+	chr4	185174114	185174115	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35000	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr13.51885841.-	chr13	51885841	51885842	-	0	NA	Intergenic	AluSx|SINE|Alu	29327	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	"serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3"	protein-coding
chr2.240402006.-	chr2	240402006	240402007	-	0	NA	Intergenic	Intergenic	79363	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr6.162998508.-	chr6	162998508	162998509	-	0	NA	"intron (NM_004562, intron 1 of 11)"	AluSx1|SINE|Alu	149656	NM_001080378	135138	Hs.25791	NM_001080378	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG|RP3-495O10.2	PARK2 co-regulated	protein-coding
chr19.1626693.+	chr19	1626693	1626694	+	0	NA	"intron (NM_001136139, intron 5 of 18)"	CpG	-21210	NM_006830	10975	Hs.8372	NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	"ubiquinol-cytochrome c reductase, complex III subunit XI"	protein-coding
chr10.125273662.+	chr10	125273662	125273663	+	0	NA	Intergenic	Intergenic	-152209	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
chrX.98017377.+	chrX	98017377	98017378	+	0	NA	Intergenic	AluYa5|SINE|Alu	1177464	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
chr9.815774.-	chr9	815774	815775	-	0	NA	Intergenic	AluJb|SINE|Alu	25916	NM_021951	1761	Hs.98586	NM_021951	ENSG00000137090	DMRT1	DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
chr14.71374354.+	chr14	71374354	71374355	+	0	NA	"5' UTR (NM_014982, exon 1 of 36)"	"5' UTR (NM_014982, exon 1 of 36)"	232	NM_014982	22990	Hs.446559	NM_014982	ENSG00000100731	PCNX	PCNXL1	pecanex homolog (Drosophila)	protein-coding
chr3.45348430.+	chr3	45348430	45348431	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-80616	NM_015444	25907	Hs.740403	NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
chr16.17617313.+	chr16	17617313	17617314	+	0	NA	Intergenic	AluSz|SINE|Alu	-52575	NM_022166	64131	Hs.737758	NM_022166	ENSG00000103489	XYLT1	PXYLT1|XT-I|XT1|XTI|XYLTI	xylosyltransferase I	protein-coding
chr12.109137821.-	chr12	109137821	109137822	-	0	NA	Intergenic	AluSg|SINE|Alu	12495	NM_014325	23603	Hs.330384	NM_001105237	ENSG00000110880	CORO1C	HCRNN4	"coronin, actin binding protein, 1C"	protein-coding
chr12.58176617.-	chr12	58176617	58176618	-	0	NA	promoter-TSS (NM_001172697)	promoter-TSS (NM_001172697)	-89	NM_001172697	10102	Hs.632704	NM_001172695	ENSG00000123297	TSFM	EFTS|EFTSMT	"Ts translation elongation factor, mitochondrial"	protein-coding
chr14.53414024.-	chr14	53414024	53414025	-	0	NA	"intron (NM_006832, intron 2 of 14)"	AluY|SINE|Alu	-3791	NM_001134999	10979	Hs.509343	NM_001134999	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
chrX.39680332.-	chrX	39680332	39680333	-	0	NA	Intergenic	CpG	-276387	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr2.201942884.+	chr2	201942884	201942885	+	0	NA	"intron (NM_001257102, intron 2 of 3)"	AluY|SINE|Alu	6422	NM_001257102	4709	Hs.109760	NM_001257102	ENSG00000119013	NDUFB3	B12|CI-B12	"NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa"	protein-coding
chr7.53196226.-	chr7	53196226	53196227	-	0	NA	Intergenic	AluY|SINE|Alu	-92877	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr7.66137274.-	chr7	66137274	66137275	-	0	NA	Intergenic	AluY|SINE|Alu	-43406	NM_001167961	154881	Hs.546627	NM_001167961	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerisation domain containing 7	protein-coding
chr3.36494785.+	chr3	36494785	36494786	+	0	NA	"intron (NM_003149, intron 2 of 10)"	LTR12C|LTR|ERV1	72688	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr14.102954945.-	chr14	102954945	102954946	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21183	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr6.13335677.-	chr6	13335677	13335678	-	0	NA	Intergenic	AluYa5|SINE|Alu	6890	NM_001258457	51256	Hs.484678	NM_001143964	ENSG00000145979	TBC1D7	PIG51|TBC7|dJ257A7.3	"TBC1 domain family, member 7"	protein-coding
chr22.41844585.-	chr22	41844585	41844586	-	0	NA	Intergenic	Intergenic	1558	NM_016272	10766	Hs.743993	NM_016272	ENSG00000183864	TOB2	TOB4|TOBL|TROB2	"transducer of ERBB2, 2"	protein-coding
chr19.1018378.+	chr19	1018378	1018379	+	0	NA	"intron (NM_001033026, intron 1 of 10)"	"intron (NM_001033026, intron 1 of 10)"	2763	NM_001033026	91304	Hs.515003	NM_001033026	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
chr8.85063557.+	chr8	85063557	85063558	+	0	NA	Intergenic	AluY|SINE|Alu	-31896	NM_001100393	138046	Hs.121663	NM_001100391	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
chr4.185174135.+	chr4	185174135	185174136	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35021	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr1.113336897.-	chr1	113336897	113336898	-	0	NA	Intergenic	MER70B|LTR|ERVL	-73708	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr18.34765033.+	chr18	34765033	34765034	+	0	NA	"intron (NM_020776, intron 9 of 9)"	AluY|SINE|Alu	-355854	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr11.2213897.-	chr11	2213897	2213898	-	0	NA	Intergenic	Intergenic	-19604	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	miscRNA
chr12.133328270.-	chr12	133328270	133328271	-	0	NA	"intron (NM_015114, intron 2 of 12)"	AluSx1|SINE|Alu	-10181	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
chr5.175665288.-	chr5	175665288	175665289	-	0	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	82	NM_198567	375484	Hs.719847	NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1	SUMO-interacting motifs containing 1	protein-coding
chr12.121338299.-	chr12	121338299	121338300	-	0	NA	"intron (NM_139015, intron 1 of 10)"	AluJb|SINE|Alu	-3856	NM_139015	121665	Hs.683964	NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
chr1.78230564.-	chr1	78230564	78230565	-	0	NA	Intergenic	AluSz|SINE|Alu	5000	NM_201624	23032	Hs.480597	NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
chr17.80622198.+	chr17	80622198	80622199	+	0	NA	"intron (NM_006822, intron 2 of 5)"	"intron (NM_006822, intron 2 of 5)"	-15787	NM_019613	56270	Hs.132161	NM_019613	ENSG00000141580	WDR45B	WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
chr12.31575299.-	chr12	31575299	31575300	-	0	NA	"intron (NM_144973, intron 11 of 20)"	AluY|SINE|Alu	96140	NM_001135812	58516	Hs.505154	NM_001135811	ENSG00000139146	FAM60A	C12orf14|TERA	"family with sequence similarity 60, member A"	protein-coding
chr5.1494529.-	chr5	1494529	1494530	-	0	NA	"intron (NM_024830, intron 3 of 13)"	"intron (NM_024830, intron 3 of 13)"	-29547	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
chr12.109325567.+	chr12	109325567	109325568	+	0	NA	"intron (NM_018711, intron 10 of 14)"	AluY|SINE|Alu	51710	NM_001917	1610	Hs.113227	NM_001917	ENSG00000110887	DAO	DAAO|DAMOX|OXDA	D-amino-acid oxidase	protein-coding
chr1.183604871.-	chr1	183604871	183604872	-	0	NA	promoter-TSS (NM_015149)	promoter-TSS (NM_015149)	-205	NM_001270439	10092	Hs.518609	NM_001270439	ENSG00000162704	ARPC5	ARC16|dJ127C7.3|p16-Arc	"actin related protein 2/3 complex, subunit 5, 16kDa"	protein-coding
chr2.222425822.-	chr2	222425822	222425823	-	0	NA	"intron (NM_004438, intron 3 of 17)"	AluY|SINE|Alu	-11188	NM_004438	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
chr2.61306981.-	chr2	61306981	61306982	-	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	-13618	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr20.45571513.+	chr20	45571513	45571514	+	0	NA	"intron (NM_005244, intron 1 of 15)"	AluSz|SINE|Alu	48250	NM_172110	2139	Hs.722416	NM_005244	ENSG00000064655	EYA2	EAB1	eyes absent homolog 2 (Drosophila)	protein-coding
chr7.3828928.+	chr7	3828928	3828929	+	0	NA	"intron (NM_152744, intron 4 of 44)"	AluSp|SINE|Alu	-340389	NM_001079653	221935	Hs.653013	NM_001079653	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
chr7.1286164.+	chr7	1286164	1286165	+	0	NA	Intergenic	CpG	13510	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr4.148075839.-	chr4	148075839	148075840	-	0	NA	Intergenic	AluY|SINE|Alu	208805	NM_031956	83894	Hs.378893	NM_031956	ENSG00000137473	TTC29	NYD-SP14|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
chr9.120507361.+	chr9	120507361	120507362	+	0	NA	Intergenic	CpG	40908	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr2.132978686.+	chr2	132978686	132978687	+	0	NA	"intron (NR_027020, intron 1 of 4)"	SVA_D|Other|Other	35967	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B	microRNA 663b	miscRNA
chr9.21968294.-	chr9	21968294	21968295	-	0	NA	TTS (NR_024274)	TTS (NR_024274)	-1156	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	miscRNA
chr5.137550374.+	chr5	137550374	137550375	+	0	NA	Intergenic	AluY|SINE|Alu	-1342	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
chr20.13654640.+	chr20	13654640	13654641	+	0	NA	Intergenic	AluY|SINE|Alu	-35057	NM_017714	55617	Hs.348297	NM_017714	ENSG00000089123	TASP1	C20orf13|dJ585I14.2	"taspase, threonine aspartase, 1"	protein-coding
chr16.14151918.+	chr16	14151918	14151919	+	0	NA	Intergenic	Intergenic	-13278	NM_014048	57496	Hs.49143	NM_014048	ENSG00000186260	MKL2	MRTF-B|NPD001	MKL/myocardin-like 2	protein-coding
chr11.67346415.-	chr11	67346415	67346416	-	0	NA	Intergenic	AluY|SINE|Alu	4651	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chrX.21676543.+	chrX	21676543	21676544	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-95	NM_153270	257240	Hs.448572	NM_153270	ENSG00000185915	KLHL34	-	kelch-like family member 34	protein-coding
chr11.74107056.-	chr11	74107056	74107057	-	0	NA	"intron (NM_173582, intron 1 of 13)"	AluJr|SINE|Alu	-2446	NM_173582	283209	Hs.26612	NM_173582	ENSG00000165434	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
chr15.93372464.+	chr15	93372464	93372465	+	0	NA	Intergenic	AluSg|SINE|Alu	33750	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr2.136633756.+	chr2	136633756	136633757	+	0	NA	"intron (NM_005915, intron 1 of 16)"	CpG	291	NM_005915	4175	Hs.444118	NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
chr3.85080924.+	chr3	85080924	85080925	+	0	NA	"intron (NM_001167674, intron 1 of 9)"	AluY|SINE|Alu	72791	NM_001167674	253559	Hs.164578	NM_001167674	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
chr11.2005121.-	chr11	2005121	2005122	-	0	NA	"non-coding (NR_024471, exon 4 of 4)"	"non-coding (NR_024471, exon 4 of 4)"	-6029	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	miscRNA
chr1.45937949.-	chr1	45937949	45937950	-	0	NA	"intron (NM_007170, intron 1 of 10)"	"intron (NM_007170, intron 1 of 10)"	-18891	NM_007170	10420	Hs.591499	NM_007170	ENSG00000070759	TESK2	-	testis-specific kinase 2	protein-coding
chr2.73613424.-	chr2	73613424	73613425	-	0	NA	"intron (NM_015120, intron 1 of 22)"	CpG	-538	NM_015120	7840	Hs.184720	NM_015120	ENSG00000116127	ALMS1	ALSS	Alstrom syndrome 1	protein-coding
chrX.109043310.-	chrX	109043310	109043311	-	0	NA	Intergenic	AluY|SINE|Alu	66689	NM_004458	2182	Hs.268785	NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
chr6.71104372.+	chr6	71104372	71104373	+	0	NA	Intergenic	MER48|LTR|ERV1	-18735	NM_020819	57579	Hs.211700	NM_001105531	ENSG00000082269	FAM135A	KIAA1411	"family with sequence similarity 135, member A"	protein-coding
chr20.39037376.-	chr20	39037376	39037377	-	0	NA	Intergenic	AluYk4|SINE|Alu	-280500	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	KRML|MCTO	v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)	protein-coding
chr8.95668737.+	chr8	95668737	95668738	+	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	15373	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr22.22550486.-	chr22	22550486	22550487	-	0	NA	Intergenic	Intergenic	48714	NM_007128	7441	Hs.247979	NM_007128	ENSG00000169575	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
chr16.67519987.+	chr16	67519987	67519988	+	0	NA	Intergenic	AluY|SINE|Alu	-2271	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr15.29132958.-	chr15	29132958	29132959	-	0	NA	Intergenic	Intergenic	39137	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	"golgin A6 family-like 7, pseudogene"	pseudo
chr17.1533091.-	chr17	1533091	1533092	-	0	NA	promoter-TSS (NM_152346)	promoter-TSS (NM_152346)	961	NM_152346	124935	Hs.160550	NM_152346	ENSG00000167703	SLC43A2	LAT4	"solute carrier family 43, member 2"	protein-coding
chr6.41515964.+	chr6	41515964	41515965	+	0	NA	"intron (NM_001012427, intron 1 of 16)"	CpG	1800	NM_138457	116113	Hs.131436	NM_001012426	ENSG00000137166	FOXP4	hFKHLA	forkhead box P4	protein-coding
chr1.27820979.-	chr1	27820979	27820980	-	0	NA	Intergenic	AluJo|SINE|Alu	4301	NM_001201404	10163	Hs.469244	NM_001201404	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	"WAS protein family, member 2"	protein-coding
chr14.104314102.+	chr14	104314102	104314103	+	0	NA	promoter-TSS (NM_015316)	promoter-TSS (NM_015316)	44	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	miscRNA
chr15.30998652.+	chr15	30998652	30998653	+	0	NA	"intron (NR_038255, intron 1 of 3)"	AluY|SINE|Alu	47732	NR_038255	100288637	Hs.668950	NR_038253		LOC100288637	-	OTU domain containing 7A pseudogene	pseudo
chr19.532581.+	chr19	532581	532582	+	0	NA	"intron (NM_004359, intron 1 of 4)"	CpG	848	NM_004359	997	Hs.514997	NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34	protein-coding
chr11.45810298.+	chr11	45810298	45810299	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15325	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr2.202898620.-	chr2	202898620	202898621	-	0	NA	promoter-TSS (NM_003507)	promoter-TSS (NM_003507)	690	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled family receptor 7	protein-coding
chr7.5355883.+	chr7	5355883	5355884	+	0	NA	"intron (NM_001080495, intron 24 of 29)"	"intron (NM_001080495, intron 24 of 29)"	33322	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr20.61925861.+	chr20	61925861	61925862	+	0	NA	"intron (NM_020882, intron 1 of 35)"	"intron (NM_020882, intron 1 of 35)"	1323	NM_020882	57642	Hs.271285	NM_020882	ENSG00000101203	COL20A1	bA261N11.4	"collagen, type XX, alpha 1"	protein-coding
chr1.242178373.+	chr1	242178373	242178374	+	0	NA	Intergenic	AluY|SINE|Alu	-15988	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
chr11.8302430.-	chr11	8302430	8302431	-	0	NA	Intergenic	AluY|SINE|Alu	12248	NM_001270428	4004	Hs.654426	NM_001270428	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
chr17.16540176.-	chr17	16540176	16540177	-	0	NA	"intron (NM_020787, intron 3 of 5)"	"intron (NM_020787, intron 3 of 5)"	-16991	NM_020787	57547	Hs.128078	NM_020787	ENSG00000197566	ZNF624	-	zinc finger protein 624	protein-coding
chr1.233206601.-	chr1	233206601	233206602	-	0	NA	"intron (NM_014801, intron 23 of 33)"	AluY|SINE|Alu	-120231	NM_032324	84284	Hs.642715	NM_032324		NTPCR	C1orf57|HCR-NTPase|RP4-678E16.2	"nucleoside-triphosphatase, cancer-related"	protein-coding
chr2.98280130.+	chr2	98280130	98280131	+	0	NA	"intron (NM_005735, intron 1 of 10)"	CpG	431	NM_005735	10120	Hs.98791	NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	"ARP1 actin-related protein 1 homolog B, centractin beta (yeast)"	protein-coding
chr4.185174271.-	chr4	185174271	185174272	-	0	NA	Intergenic	LTR12C|LTR|ERV1	35157	NM_153343	133121	Hs.297814	NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
chr7.1370855.+	chr7	1370855	1370856	+	0	NA	Intergenic	CpG	98201	NM_001080461	340260	Hs.232272	NM_001080461		UNCX	UNCX4.1	UNC homeobox	protein-coding
chr2.10163544.+	chr2	10163544	10163545	+	0	NA	Intergenic	Intergenic	-20138	NM_003597	8462	Hs.694968	NM_001177716	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
chr2.5680149.+	chr2	5680149	5680150	+	0	NA	Intergenic	Intergenic	-152650	NM_003108	6664	Hs.432638	NM_003108	ENSG00000176887	SOX11	-	SRY (sex determining region Y)-box 11	protein-coding
chr4.163164002.+	chr4	163164002	163164003	+	0	NA	Intergenic	AluY|SINE|Alu	-78816	NM_001128427	56884	Hs.32452	NM_001128427	ENSG00000168843	FSTL5	-	follistatin-like 5	protein-coding
chr6.144923569.-	chr6	144923569	144923570	-	0	NA	"intron (NM_007124, intron 50 of 73)"	AluSx3|SINE|Alu	-310696	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr7.156795113.-	chr7	156795113	156795114	-	0	NA	Intergenic	Intergenic	-7016	NM_001165255	3110	Hs.37035	NM_001165255	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
chr6.43070145.+	chr6	43070145	43070146	+	0	NA	"intron (NM_001270398, intron 1 of 19)"	AluSx1|SINE|Alu	25593	NM_001270398	5754	Hs.90572	NM_001270398	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
chr15.89358746.-	chr15	89358746	89358747	-	0	NA	"intron (NM_001135, intron 1 of 15)"	AluSx1|SINE|Alu	-12072	NM_013227	176	Hs.616395	NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK	aggrecan	protein-coding
chr6.149638257.+	chr6	149638257	149638258	+	0	NA	Intergenic	CpG	-1179	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chrX.15372361.-	chrX	15372361	15372362	-	0	NA	"intron (NR_037859, intron 12 of 14)"	AluY|SINE|Alu	18685	NR_033836	5277	Hs.137154	NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|PIG-A	"phosphatidylinositol glycan anchor biosynthesis, class A"	protein-coding
chr3.183052347.-	chr3	183052347	183052348	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81315	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr8.25405672.-	chr8	25405672	25405673	-	0	NA	Intergenic	AluY|SINE|Alu	-89159	NM_152562	157313	Hs.33366	NM_152562	ENSG00000184661	CDCA2	Repo-Man	cell division cycle associated 2	protein-coding
chr11.33110417.+	chr11	33110417	33110418	+	0	NA	"intron (NM_001326, intron 17 of 20)"	AluJb|SINE|Alu	12721	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr17.8621748.+	chr17	8621748	8621749	+	0	NA	Intergenic	LTR12C|LTR|ERV1	26406	NM_144681	146849	Hs.121438	NM_001158261	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
chr16.4835186.-	chr16	4835186	4835187	-	0	NA	"intron (NM_144605, intron 4 of 9)"	AluSq2|SINE|Alu	3212	NM_001253790	440335	Hs.390599	NM_001253790	ENSG00000267795	LOC440335	-	uncharacterized LOC440335	protein-coding
chr7.157610354.+	chr7	157610354	157610355	+	0	NA	"intron (NM_130842, intron 11 of 21)"	"intron (NM_130842, intron 11 of 21)"	-36923	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	miscRNA
chr1.153961796.+	chr1	153961796	153961797	+	0	NA	Intergenic	AluY|SINE|Alu	-1443	NM_001030	6232	Hs.654475	NM_001030	ENSG00000177954	RPS27	MPS-1|MPS1|S27	ribosomal protein S27	protein-coding
chr2.21484712.-	chr2	21484712	21484713	-	0	NA	Intergenic	Intergenic	217767	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr16.86635847.+	chr16	86635847	86635848	+	0	NA	Intergenic	AluY|SINE|Alu	23732	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr3.182599215.+	chr3	182599215	182599216	+	0	NA	"intron (NM_014616, intron 21 of 29)"	AluSx|SINE|Alu	87924	NM_014616	23200	Hs.478429	NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	"ATPase, class VI, type 11B"	protein-coding
chr8.142440410.-	chr8	142440410	142440411	-	0	NA	"intron (NM_032611, intron 4 of 4)"	CpG	-8403	NM_032611	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	"protein tyrosine phosphatase type IVA, member 3"	protein-coding
chr1.244391696.-	chr1	244391696	244391697	-	0	NA	Intergenic	Intergenic	124241	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
chr6.149638264.-	chr6	149638264	149638265	-	0	NA	Intergenic	CpG	1172	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr2.211494505.-	chr2	211494505	211494506	-	0	NA	"intron (NM_001122634, intron 11 of 27)"	AluY|SINE|Alu	-12210	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	miscRNA
chr2.63815361.-	chr2	63815361	63815362	-	0	NA	promoter-TSS (NM_001199111)	promoter-TSS (NM_001199111)	382	NM_005917	4190	Hs.526521	NM_001199111	ENSG00000014641	MDH1	MDH-s|MDHA|MGC:1375|MOR2	"malate dehydrogenase 1, NAD (soluble)"	protein-coding
chr11.9503845.+	chr11	9503845	9503846	+	0	NA	"intron (NM_003442, intron 7 of 15)"	AluY|SINE|Alu	21333	NM_003442	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
chr1.228768437.+	chr1	228768437	228768438	+	0	NA	Intergenic	CpG	-11957	NR_037962	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K	ras homolog family member U	protein-coding
chr13.41885942.+	chr13	41885942	41885943	+	0	NA	"intron (NM_024561, intron 1 of 19)"	CpG	601	NM_001110798	79612	Hs.512914	NM_001110798	ENSG00000172766	NAA16	NARG1L	"N(alpha)-acetyltransferase 16, NatA auxiliary subunit"	protein-coding
chr3.115832420.+	chr3	115832420	115832421	+	0	NA	"intron (NM_002338, intron 1 of 6)"	AluYa5|SINE|Alu	331965	NM_002338	4045	Hs.723683	NM_002338		LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
chr5.2391228.+	chr5	2391228	2391229	+	0	NA	Intergenic	Intergenic	360541	NM_033267	153572	Hs.282089	NM_001134222	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
chr11.12841249.+	chr11	12841249	12841250	+	0	NA	"intron (NM_021961, intron 3 of 12)"	AluY|SINE|Alu	145280	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
chr1.227498644.+	chr1	227498644	227498645	+	0	NA	"intron (NM_014826, intron 1 of 34)"	AluY|SINE|Alu	7182	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
chr2.190692822.-	chr2	190692822	190692823	-	0	NA	"intron (NM_001128143, intron 5 of 11)"	AluY|SINE|Alu	43725	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr18.5524279.+	chr18	5524279	5524280	+	0	NA	"intron (NM_012307, intron 1 of 22)"	AluSx1|SINE|Alu	19707	NM_012307	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
chr9.135013563.-	chr9	135013563	135013564	-	0	NA	Intergenic	AluSz|SINE|Alu	23771	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chrX.30619888.+	chrX	30619888	30619889	+	0	NA	Intergenic	SVA_F|Other|Other	-23855	NM_025159	80231	Hs.665009	NM_025159	ENSG00000120280	CXorf21	-	chromosome X open reading frame 21	protein-coding
chr7.534864.-	chr7	534864	534865	-	0	NA	Intergenic	Intergenic	-24617	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr12.34191971.+	chr12	34191971	34191972	+	0	NA	Intergenic	AluSp|SINE|Alu	16755	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr7.91257055.-	chr7	91257055	91257056	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-252961	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF	-	mitochondrial transcription termination factor	protein-coding
chrX.144903002.+	chrX	144903002	144903003	+	0	NA	"5' UTR (NM_001144009, exon 1 of 2)"	"5' UTR (NM_001144009, exon 1 of 2)"	136	NM_001144009	84631	Hs.320368	NM_001144003	ENSG00000185985	SLITRK2	CXorf2|SLITL1	"SLIT and NTRK-like family, member 2"	protein-coding
chr2.191273302.-	chr2	191273302	191273303	-	0	NA	"intron (NM_017694, intron 1 of 7)"	CpG	-221	NM_017694	54842	Hs.744117	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
chr3.46709786.+	chr3	46709786	46709787	+	0	NA	TTS (NM_001190707)	TTS (NM_001190707)	9113	NM_182775	259173	Hs.517937	NM_001190707	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
chr2.170666403.-	chr2	170666403	170666404	-	0	NA	"intron (NM_003142, intron 8 of 11)"	AluY|SINE|Alu	-11081	NM_003142	6741	Hs.632535	NM_003142	ENSG00000138385	SSB	LARP3|La	Sjogren syndrome antigen B (autoantigen La)	protein-coding
chr1.55483770.-	chr1	55483770	55483771	-	0	NA	Intergenic	AluSx1|SINE|Alu	-19153	NM_057176	7809	Hs.151291	NM_057176		BSND	BART|DFNB73	"Bartter syndrome, infantile, with sensorineural deafness (Barttin)"	protein-coding
chr6.149638287.+	chr6	149638287	149638288	+	0	NA	Intergenic	CpG	-1149	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr7.38566166.+	chr7	38566166	38566167	+	0	NA	"intron (NM_139316, intron 2 of 19)"	AluSz6|SINE|Alu	105001	NM_139316	273	Hs.592182	NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
chr8.128328709.+	chr8	128328709	128328710	+	0	NA	Intergenic	Intergenic	-99148	NM_001159542	5462	Hs.450254	NR_002304	ENSG00000212993	POU5F1B	OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
chr14.51521355.-	chr14	51521355	51521356	-	0	NA	"intron (NM_052978, intron 1 of 6)"	AluSc|SINE|Alu	-41067	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
chr3.183052334.-	chr3	183052334	183052335	-	0	NA	"intron (NM_015078, intron 5 of 29)"	AluSq2|SINE|Alu	-81302	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5"	protein-coding
chr8.86574381.+	chr8	86574381	86574382	+	0	NA	"exon (NM_172239, exon 1 of 1)"	"exon (NM_172239, exon 1 of 1)"	361	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	"REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)"	pseudo
chr7.2933073.+	chr7	2933073	2933074	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49114	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr1.213195090.+	chr1	213195090	213195091	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5922	NM_144567	90806	Hs.157078	NM_144567	ENSG00000174606	ANGEL2	KIAA0759L	angel homolog 2 (Drosophila)	protein-coding
chr4.74964830.+	chr4	74964830	74964831	+	0	NA	"exon (NM_002089, exon 1 of 4)"	"exon (NM_002089, exon 1 of 4)"	167	NM_002089	2920	Hs.75765	NM_002089	ENSG00000081041	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	chemokine (C-X-C motif) ligand 2	protein-coding
chr14.23706425.+	chr14	23706425	23706426	+	0	NA	Intergenic	AluSz|SINE|Alu	48884	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr14.103396851.-	chr14	103396851	103396852	-	0	NA	"intron (NM_030943, intron 11 of 11)"	CpG-7431	-7858	NM_030943	81693	Hs.534494	NM_030943	ENSG00000166126	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
chr11.9346823.+	chr11	9346823	9346824	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10508	NR_028491	440026	Hs.594563	NM_001165030	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
chr5.18111624.-	chr5	18111624	18111625	-	0	NA	Intergenic	AluY|SINE|Alu	724205	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr13.22049154.+	chr13	22049154	22049155	+	0	NA	Intergenic	AluY|SINE|Alu	-15646	NM_153251	253832	Hs.564611	NM_153251		ZDHHC20	-	"zinc finger, DHHC-type containing 20"	protein-coding
chr19.4065802.-	chr19	4065802	4065803	-	0	NA	"intron (NM_015898, intron 1 of 2)"	CpG	-1014	NM_015898	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
chr3.28951291.+	chr3	28951291	28951292	+	0	NA	Intergenic	AluY|SINE|Alu	334522	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr12.132653212.+	chr12	132653212	132653213	+	0	NA	Intergenic	CpG	24219	NM_024078	79050	Hs.558536	NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog (S. cerevisiae)	protein-coding
chr4.1541966.-	chr4	1541966	1541967	-	0	NA	Intergenic	Intergenic	-143752	NM_001013622	152877	Hs.143314	NM_001013622	ENSG00000174137	FAM53A	DNTNP	"family with sequence similarity 53, member A"	protein-coding
chr21.35774249.+	chr21	35774249	35774250	+	0	NA	Intergenic	AluSc8|SINE|Alu	26500	NM_058182	54065	Hs.656195	NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B	small integral membrane protein 11	protein-coding
chr8.14882354.-	chr8	14882354	14882355	-	0	NA	"intron (NM_139167, intron 1 of 7)"	AluY|SINE|Alu	171335	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	miscRNA
chr11.67351055.+	chr11	67351055	67351056	+	0	NA	promoter-TSS (NM_000852)	promoter-TSS (NM_000852)	-11	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr10.118500957.-	chr10	118500957	118500958	-	0	NA	"intron (NM_025015, intron 1 of 11)"	CpG	-1128	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
chr5.3188277.-	chr5	3188277	3188278	-	0	NA	Intergenic	CpG	-347931	NR_033898	285577	Hs.582442	NR_033898	ENSG00000248118	LOC285577	-	uncharacterized LOC285577	miscRNA
chr13.100934711.-	chr13	100934711	100934712	-	0	NA	"intron (NM_000282, intron 12 of 23)"	LTR12C|LTR|ERV1	-193442	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	"propionyl CoA carboxylase, alpha polypeptide"	protein-coding
chr17.79427759.-	chr17	79427759	79427760	-	0	NA	"intron (NM_001080519, intron 24 of 26)"	"intron (NM_001080519, intron 24 of 26)"	9545	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	-	microRNA 3186	miscRNA
chr6.88932908.+	chr6	88932908	88932909	+	0	NA	Intergenic	AluY|SINE|Alu	-57141	NM_001160258	1268	Hs.75110	NM_001160226	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
chr2.208475934.+	chr2	208475934	208475935	+	0	NA	"3' UTR (NM_145280, exon 4 of 4)"	"3' UTR (NM_145280, exon 4 of 4)"	13762	NM_145280	151194	Hs.664764	NM_001127395	ENSG00000144401	METTL21A	FAM119A|HCA557b	methyltransferase like 21A	protein-coding
chr5.5953952.-	chr5	5953952	5953953	-	0	NA	Intergenic	Intergenic	-383453	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	FLJ33360	-	FLJ33360 protein	miscRNA
chr16.209961.+	chr16	209961	209962	+	0	NA	Intergenic	Intergenic	-6012	NM_001003938	3042	Hs.647389	NM_001003938	ENSG00000206177	HBM	HBAP2	"hemoglobin, mu"	protein-coding
chr2.129354630.-	chr2	129354630	129354631	-	0	NA	Intergenic	Intergenic	278459	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chr18.71338750.+	chr18	71338750	71338751	+	0	NA	Intergenic	AluY|SINE|Alu	346574	NR_038340	100505817	Hs.197042	NR_038340	ENSG00000261780	LOC100505817	-	uncharacterized LOC100505817	miscRNA
chr6.144923529.+	chr6	144923529	144923530	+	0	NA	"intron (NM_007124, intron 50 of 73)"	AluSx3|SINE|Alu	310656	NM_007124	7402	Hs.133135	NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
chr3.53769552.+	chr3	53769552	53769553	+	0	NA	"intron (NM_001128840, intron 20 of 47)"	"intron (NM_001128840, intron 20 of 47)"	110868	NM_018397	55349	Hs.729536	NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
chr12.121905632.-	chr12	121905632	121905633	-	0	NA	"intron (NM_032590, intron 12 of 22)"	CpG	-67711	NM_194271	80196	Hs.292804	NM_001256858	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	"ring finger protein 34, E3 ubiquitin protein ligase"	protein-coding
chr17.17698280.-	chr17	17698280	17698281	-	0	NA	"exon (NM_030665, exon 3 of 6)"	"exon (NM_030665, exon 3 of 6)"	15437	NR_024007	140771	Hs.352643	NM_144774	ENSG00000226746	SMCR5	NCRNA00034	"Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)"	miscRNA
chr6.33948478.-	chr6	33948478	33948479	-	0	NA	Intergenic	Intergenic	-19350	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	miscRNA
chr8.144504252.+	chr8	144504252	144504253	+	0	NA	Intergenic	Intergenic	8350	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr6.166722183.+	chr6	166722183	166722184	+	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	-312	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
chr2.122878839.-	chr2	122878839	122878840	-	0	NA	Intergenic	AluY|SINE|Alu	-365718	NR_048557	7247	Hs.75066	NM_001261401	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
chr13.21278355.+	chr13	21278355	21278356	+	0	NA	"exon (NM_138284, exon 2 of 3)"	"exon (NM_138284, exon 2 of 3)"	873	NM_138284	53342	Hs.655142	NM_138284	ENSG00000172458	IL17D	IL-17D|IL-22|IL-27|IL27	interleukin 17D	protein-coding
chr6.43016664.+	chr6	43016664	43016665	+	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	5019	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr12.57177806.+	chr12	57177806	57177807	+	0	NA	"intron (NM_003725, intron 3 of 4)"	SVA_D|Other|Other	20698	NM_003725	8630	Hs.524513	NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
chr7.56109486.-	chr7	56109486	56109487	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9782	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr2.163473818.+	chr2	163473818	163473819	+	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	221439	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chr11.64628348.-	chr11	64628348	64628349	-	0	NA	"intron (NM_006795, intron 2 of 4)"	AluSg7|SINE|Alu	16307	NM_017525	55561	Hs.293590	NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding
chr1.113336838.+	chr1	113336838	113336839	+	0	NA	Intergenic	MER70B|LTR|ERVL	73649	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr2.229496829.-	chr2	229496829	229496830	-	0	NA	Intergenic	AluYc|SINE|Alu	450468	NM_030623	80309	Hs.436306	NM_001142644	ENSG00000153820	SPHKAP	SKIP	"SPHK1 interactor, AKAP domain containing"	protein-coding
chrX.114953600.+	chrX	114953600	114953601	+	0	NA	Intergenic	Intergenic	125781	NM_001172335	5358	Hs.496622	NM_001136025	ENSG00000102024	PLS3	T-plastin	plastin 3	protein-coding
chr16.86635815.+	chr16	86635815	86635816	+	0	NA	Intergenic	AluY|SINE|Alu	23700	NM_005250	2300	Hs.533830	NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
chr5.174488909.+	chr5	174488909	174488910	+	0	NA	Intergenic	AluSx1|SINE|Alu	-66175	NR_046113	441116	Hs.533036	NM_001004348	ENSG00000204754	FLJ16171	-	FLJ16171 protein	miscRNA
chr13.108435259.+	chr13	108435259	108435260	+	0	NA	"intron (NM_001080396, intron 1 of 2)"	SVA_D|Other|Other	84201	NM_001080396	728215	Hs.535394	NM_001080396		FAM155A	-	"family with sequence similarity 155, member A"	protein-coding
chr10.102037188.-	chr10	102037188	102037189	-	0	NA	"intron (NM_173809, intron 4 of 4)"	SVA_D|Other|Other	-8928	NR_046296	282991	Hs.34906	NM_001001342		BLOC1S2	BLOS2|RP11-316M21.4	"biogenesis of lysosomal organelles complex-1, subunit 2"	protein-coding
chr16.1276189.+	chr16	1276189	1276190	+	0	NA	promoter-TSS (NM_012467)	promoter-TSS (NM_012467)	-935	NM_012467	25823	Hs.592076	NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
chr13.45131236.+	chr13	45131236	45131237	+	0	NA	"intron (NM_183422, intron 1 of 2)"	AluSp|SINE|Alu	-18796	NR_038381	641467	Hs.624196	NR_038381		TSC22D1-AS1	-	TSC22D1 antisense RNA 1	miscRNA
chr7.56109485.+	chr7	56109485	56109486	+	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	9783	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr21.43109559.-	chr21	43109559	43109560	-	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	-10097	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr17.29255136.+	chr17	29255136	29255137	+	0	NA	"intron (NM_018404, intron 3 of 10)"	AluSx3|SINE|Alu	6382	NM_018404	55803	Hs.514063	NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
chr10.81319170.+	chr10	81319170	81319171	+	0	NA	"exon (NM_001098668, exon 3 of 6)"	"exon (NM_001098668, exon 3 of 6)"	993	NM_001098668	729238	Hs.523084	NM_001098668	ENSG00000185303	SFTPA2	COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
chr2.2607376.+	chr2	2607376	2607377	+	0	NA	Intergenic	AluJb|SINE|Alu	-272331	NM_015025	23040	Hs.669852	NM_015025	ENSG00000186487	MYT1L	NZF1|ZC2HC4B	myelin transcription factor 1-like	protein-coding
chr16.9185072.+	chr16	9185072	9185073	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-465	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
chr17.11197454.+	chr17	11197454	11197455	+	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc|SINE|Alu	52714	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr4.132683094.-	chr4	132683094	132683095	-	0	NA	Intergenic	SST1|Satellite|centr	1387376	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr1.40953676.+	chr1	40953676	40953677	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10374	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr12.34501190.-	chr12	34501190	34501191	-	0	NA	Intergenic	GSATII|Satellite|centr	-325974	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	"ALG10, alpha-1,2-glucosyltransferase"	protein-coding
chr1.217697517.-	chr1	217697517	217697518	-	0	NA	"intron (NM_018040, intron 5 of 9)"	SVA_D|Other|Other	-106892	NM_018040	55105	Hs.420757	NM_018040		GPATCH2	CT110|GPATC2|PPP1R30|RP11-361K17.1	G patch domain containing 2	protein-coding
chr7.150812723.-	chr7	150812723	150812724	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28897	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr9.34329764.-	chr9	34329764	34329765	-	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	-260	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr11.68704284.+	chr11	68704284	68704285	+	0	NA	"exon (NM_002180, exon 13 of 15)"	"exon (NM_002180, exon 13 of 15)"	32965	NM_002180	3508	Hs.503048	NM_002180	ENSG00000132740	IGHMBP2	CATF1|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7	immunoglobulin mu binding protein 2	protein-coding
chr5.14460447.+	chr5	14460447	14460448	+	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	-121444	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr1.79749358.-	chr1	79749358	79749359	-	0	NA	Intergenic	AluSx|SINE|Alu	276863	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr2.68031704.-	chr2	68031704	68031705	-	0	NA	Intergenic	AluY|SINE|Alu	-258455	NM_173177	10438	Hs.697447	NM_001190263		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
chr19.9311330.-	chr19	9311330	9311331	-	0	NA	Intergenic	AluSc8|SINE|Alu	-14217	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr15.68127251.-	chr15	68127251	68127252	-	0	NA	Intergenic	CpG	-15209	NM_001258024	390598	Hs.451224	NM_001031807		SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
chr22.27947664.+	chr22	27947664	27947665	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	249822	NM_002430	4330	Hs.268515	NM_002430	ENSG00000169184	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
chr5.87926485.-	chr5	87926485	87926486	-	0	NA	"intron (NR_015436, intron 3 of 4)"	AluSx1|SINE|Alu	-36272	NR_030741	407047		NR_030741	ENSG00000207570	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2	microRNA 9-2	miscRNA
chr1.170388428.+	chr1	170388428	170388429	+	0	NA	Intergenic	SVA_D|Other|Other	-112835	NR_027397	92344	Hs.183702	NM_001146039	ENSG00000120370	GORAB	GO|NTKLBP1|SCYL1BP1	"golgin, RAB6-interacting"	protein-coding
chr8.128765036.-	chr8	128765036	128765037	-	0	NA	Intergenic	AluSx1|SINE|Alu	-16721	NM_002467	4609	Hs.202453	NM_002467	ENSG00000136997	MYC	MRTL|bHLHe39|c-Myc	v-myc myelocytomatosis viral oncogene homolog (avian)	protein-coding
chr1.149646792.-	chr1	149646792	149646793	-	0	NA	"intron (NR_046138, intron 2 of 3)"	CpG	-70339	NR_024510	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	-	long intergenic non-protein coding RNA 623	miscRNA
chr17.61515147.-	chr17	61515147	61515148	-	0	NA	"intron (NM_001915, intron 1 of 5)"	CpG	-3060	NM_001017917	1534	Hs.355264	NM_001017918	ENSG00000008283	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
chr5.95997965.+	chr5	95997965	95997966	+	0	NA	promoter-TSS (NM_001042440)	promoter-TSS (NM_001042440)	58	NM_001042440	831	Hs.436186	NM_001042440	ENSG00000153113	CAST	BS-17	calpastatin	protein-coding
chr5.141558667.-	chr5	141558667	141558668	-	0	NA	Intergenic	AluSg|SINE|Alu	-70343	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr1.226350687.-	chr1	226350687	226350688	-	0	NA	"intron (NM_022735, intron 3 of 7)"	AluSz6|SINE|Alu	-23736	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
chr19.3644531.+	chr19	3644531	3644532	+	0	NA	"intron (NM_012398, intron 11 of 17)"	"intron (NM_012398, intron 11 of 17)"	-17718	NM_021231	58509	Hs.128425	NM_001080543	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	"cactin, spliceosome C complex subunit"	protein-coding
chr9.138437771.-	chr9	138437771	138437772	-	0	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	214	NM_014582	29991	Hs.567489	NM_014582	ENSG00000122136	OBP2A	OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
chr11.9243418.+	chr11	9243418	9243419	+	0	NA	"intron (NM_015213, intron 1 of 22)"	AluSc8|SINE|Alu	43455	NM_001243254	23258	Hs.501857	NM_001243254	ENSG00000184014	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
chr22.47162057.-	chr22	47162057	47162058	-	0	NA	"intron (NM_014346, intron 1 of 12)"	AluY|SINE|Alu	-3539	NM_014346	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	"TBC1 domain family, member 22A"	protein-coding
chr3.174240451.-	chr3	174240451	174240452	-	0	NA	Intergenic	AluY|SINE|Alu	336660	NM_207015	254827	Hs.660010	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
chr9.120507386.+	chr9	120507386	120507387	+	0	NA	Intergenic	CpG	40933	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
chr7.2545011.-	chr7	2545011	2545012	-	0	NA	Intergenic	Intergenic	7152	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr1.113336817.+	chr1	113336817	113336818	+	0	NA	Intergenic	MER70B|LTR|ERVL	73628	NM_001004440	284467	Hs.439116	NM_001004440	ENSG00000184599	FAM19A3	TAFA-3|TAFA3	"family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"	protein-coding
chr2.71559438.-	chr2	71559438	71559439	-	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	-553	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr2.35387169.-	chr2	35387169	35387170	-	0	NA	Intergenic	AluY|SINE|Alu	-1195544	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	miscRNA
chr13.24265876.-	chr13	24265876	24265877	-	0	NA	Intergenic	AluY|SINE|Alu	-112377	NM_001204458	55504	Hs.730848	NM_001204458	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	"tumor necrosis factor receptor superfamily, member 19"	protein-coding
chr17.73636534.+	chr17	73636534	73636535	+	0	NA	"intron (NR_028439, intron 1 of 1)"	"intron (NR_028439, intron 1 of 1)"	3859	NR_028439	643008	Hs.528605	NR_015452	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
chr19.53979679.-	chr19	53979679	53979680	-	0	NA	"intron (NM_001004301, intron 1 of 3)"	AluSg4|SINE|Alu	-8690	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
chr3.183450122.+	chr3	183450122	183450123	+	0	NA	"intron (NM_018023, intron 7 of 30)"	AluSx3|SINE|Alu	34516	NM_018023	55689	Hs.632575	NM_018023	ENSG00000163872	YEATS2	-	YEATS domain containing 2	protein-coding
chr1.153574088.+	chr1	153574088	153574089	+	0	NA	Intergenic	AluY|SINE|Alu	11426	NM_080388	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
chr19.1431283.+	chr19	1431283	1431284	+	0	NA	"intron (NM_170711, intron 10 of 12)"	AluY|SINE|Alu	-7080	NM_001018	6209	Hs.406683	NM_001018	ENSG00000115268	RPS15	RIG|S15	ribosomal protein S15	protein-coding
chr1.16675120.+	chr1	16675120	16675121	+	0	NA	"intron (NM_018994, intron 1 of 9)"	AluSx1|SINE|Alu	3828	NM_018994	54455	Hs.522384	NM_018994		FBXO42	Fbx42|JFK	F-box protein 42	protein-coding
chr12.112407404.-	chr12	112407404	112407405	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluYk4|SINE|Alu	-43619	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr16.656954.-	chr16	656954	656955	-	0	NA	"intron (NM_001172663, intron 2 of 6)"	"intron (NM_001172663, intron 2 of 6)"	-16781	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr17.74632785.-	chr17	74632785	74632786	-	0	NA	"intron (NM_018414, intron 1 of 8)"	SVA_B|Other|Other	-7109	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr19.1871376.-	chr19	1871376	1871377	-	0	NA	Intergenic	Intergenic	7812	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
chr6.158700230.+	chr6	158700230	158700231	+	0	NA	Intergenic	AluY|SINE|Alu	-33462	NM_001007466	56995	Hs.486993	NM_001007466	ENSG00000130338	TULP4	TUSP	tubby like protein 4	protein-coding
chr19.46185848.+	chr19	46185848	46185849	+	0	NA	TTS (NM_000164)	TTS (NM_000164)	-7582	NR_037512	100500845		NR_037512		MIR642B	-	microRNA 642b	miscRNA
chr1.32731818.-	chr1	32731818	32731819	-	0	NA	"intron (NM_005356, intron 1 of 12)"	AluY|SINE|Alu	7894	NM_001042771	3932	Hs.470627	NM_001042771	ENSG00000182866	LCK	LSK|YT16|p56lck|pp58lck	lymphocyte-specific protein tyrosine kinase	protein-coding
chr7.532220.-	chr7	532220	532221	-	0	NA	Intergenic	Intergenic	-27261	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr17.10601104.+	chr17	10601104	10601105	+	0	NA	promoter-TSS (NM_004589)	promoter-TSS (NM_004589)	177	NM_020233	56985	Hs.708369	NM_020233		ADPRM	C17orf48|NBLA03831	"ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent"	protein-coding
chr13.112722071.-	chr13	112722071	112722072	-	0	NA	"exon (NM_005986, exon 1 of 1)"	"exon (NM_005986, exon 1 of 1)"	-158	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY (sex determining region Y)-box 1	protein-coding
chr12.53373520.-	chr12	53373520	53373521	-	0	NA	Intergenic	AluSx1|SINE|Alu	26542	NM_001417	1975	Hs.702041	NM_018507	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
chr1.195321146.+	chr1	195321146	195321147	+	0	NA	Intergenic	AluY|SINE|Alu	1230465	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	miscRNA
chr17.810061.+	chr17	810061	810062	+	0	NA	"intron (NM_022463, intron 1 of 7)"	AluSx1|SINE|Alu	-42710	NM_001205319	64359	Hs.527989	NM_001205319	ENSG00000167693	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
chr16.656890.+	chr16	656890	656891	+	0	NA	"intron (NM_001172663, intron 2 of 6)"	MLT1E2|LTR|ERVL-MaLR	16717	NM_021168	57799	Hs.459630	NM_001172663	ENSG00000197562	RAB40C	RARL|RASL8C	"RAB40C, member RAS oncogene family"	protein-coding
chr10.135270814.-	chr10	135270814	135270815	-	0	NA	"non-coding (NR_002934, exon 3 of 10)"	"non-coding (NR_002934, exon 3 of 10)"	-3382	NR_002934	619207	Hs.659384	NR_002934	ENSG00000214279	LOC619207	-	scavenger receptor protein family member	pseudo
chr8.52446936.+	chr8	52446936	52446937	+	0	NA	"intron (NM_144651, intron 4 of 22)"	SVA_F|Other|Other	275069	NM_144651	137902	Hs.444882	NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
chr7.2933081.-	chr7	2933081	2933082	-	0	NA	Intergenic	AluSx1|SINE|Alu	49122	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chrX.153657081.+	chrX	153657081	153657082	+	0	NA	"exon (NM_001183, exon 1 of 10)"	"exon (NM_001183, exon 1 of 10)"	103	NM_001183	537	Hs.633817	NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	"ATPase, H+ transporting, lysosomal accessory protein 1"	protein-coding
chr17.73439485.-	chr17	73439485	73439486	-	0	NA	Intergenic	AluSg4|SINE|Alu	13179	NM_014738	9772	Hs.514474	NM_014738	ENSG00000177728	KIAA0195	TMEM94	KIAA0195	protein-coding
chr2.224599736.-	chr2	224599736	224599737	-	0	NA	Intergenic	AluSx1|SINE|Alu	-102583	NM_001039569	130340	Hs.632555	NM_178814		AP1S3	-	"adaptor-related protein complex 1, sigma 3 subunit"	protein-coding
chr6.149638255.-	chr6	149638255	149638256	-	0	NA	Intergenic	CpG	1181	NM_015093	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chr5.114712452.-	chr5	114712452	114712453	-	0	NA	Intergenic	AluYc3|SINE|Alu	79994	NM_001040440	153733	Hs.436121	NM_001040440	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
chr10.71044914.-	chr10	71044914	71044915	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15158	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr9.80898794.+	chr9	80898794	80898795	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13265	NM_058179	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
chr19.58250056.+	chr19	58250056	58250057	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8108	NM_173632	284309	Hs.737521	NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
chr5.45596277.+	chr5	45596277	45596278	+	0	NA	"intron (NM_021072, intron 2 of 7)"	AluY|SINE|Alu	99943	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
chr14.94606720.+	chr14	94606720	94606721	+	0	NA	Intergenic	Intergenic	-10763	NM_032036	83982	Hs.94695	NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	"interferon, alpha-inducible protein 27-like 2"	protein-coding
chr6.114067416.-	chr6	114067416	114067417	-	0	NA	Intergenic	AluY|SINE|Alu	111111	NM_002356	4082	Hs.712658	NM_002356	ENSG00000155130	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
chr3.102973903.-	chr3	102973903	102973904	-	0	NA	Intergenic	SVA_D|Other|Other	-820044	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr16.27160361.+	chr16	27160361	27160362	+	0	NA	Intergenic	AluJb|SINE|Alu	-54446	NM_024773	79831	Hs.145717	NM_001145348	ENSG00000155666	KDM8	JMJD5	lysine (K)-specific demethylase 8	protein-coding
chr8.142094701.+	chr8	142094701	142094702	+	0	NA	Intergenic	Intergenic	-44019	NM_014957	22898	Hs.18166	NM_014957	ENSG00000105339	DENND3	-	DENN/MADD domain containing 3	protein-coding
chr7.533047.-	chr7	533047	533048	-	0	NA	Intergenic	AluSx1|SINE|Alu	-26434	NM_002607	5154	Hs.535898	NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
chr9.43582527.+	chr9	43582527	43582528	+	0	NA	Intergenic	AluY|SINE|Alu	48203	NM_001145196	389730	Hs.455299	NM_001145196	ENSG00000185775	SPATA31A6	FAM75A6	"SPATA31 subfamily A, member 6"	protein-coding
chr19.4184250.+	chr19	4184250	4184251	+	0	NA	"intron (NM_133475, intron 1 of 21)"	"intron (NM_133475, intron 1 of 21)"	899	NM_133475	170961	Hs.197872	NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
chr1.183308369.+	chr1	183308369	183308370	+	0	NA	"intron (NM_015039, intron 1 of 10)"	AluY|SINE|Alu	-34360	NM_170706	23057	Hs.497123	NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chrX.689441.-	chrX	689441	689442	-	0	NA	Intergenic	Intergenic	-104362	NM_006883	6473	Hs.105932	NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOXY|SS	short stature homeobox	protein-coding
chr17.21027147.+	chr17	21027147	21027148	+	0	NA	Intergenic	AluSc|SINE|Alu	-3094	NM_015510	25979	Hs.386989	NM_015510	ENSG00000109016	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
chr15.89721767.+	chr15	89721767	89721768	+	0	NA	"intron (NM_007011, intron 10 of 14)"	"intron (NM_007011, intron 10 of 14)"	43155	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr17.65766232.-	chr17	65766232	65766233	-	0	NA	Intergenic	AluSg4|SINE|Alu	-29446	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	"small nucleolar RNA, H/ACA box 38B"	snoRNA
chr5.1858757.-	chr5	1858757	1858758	-	0	NA	Intergenic	Intergenic	-24123	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr12.38493585.+	chr12	38493585	38493586	+	0	NA	Intergenic	Intergenic	-216972	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	"ALG10B, alpha-1,2-glucosyltransferase"	protein-coding
chr5.176237144.-	chr5	176237144	176237145	-	0	NA	promoter-TSS (NM_133369)	promoter-TSS (NM_133369)	416	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 homolog A (C. elegans)	protein-coding
chr13.83333806.-	chr13	83333806	83333807	-	0	NA	Intergenic	AluYb8|SINE|Alu	-1122722	NM_052910	114798	Hs.415478	NM_052910	ENSG00000178235	SLITRK1	LRRC12|RP11-395N17.1|TTM	"SLIT and NTRK-like family, member 1"	protein-coding
chr13.28540761.+	chr13	28540761	28540762	+	0	NA	"intron (NM_001265, intron 1 of 2)"	CpG	2744	NM_001265	1045	Hs.740844	NM_001265		CDX2	CDX-3|CDX3	caudal type homeobox 2	protein-coding
chr2.202046031.-	chr2	202046031	202046032	-	0	NA	Intergenic	AluSz|SINE|Alu	1590	NM_032977	843	Hs.5353	NM_001206524	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	"caspase 10, apoptosis-related cysteine peptidase"	protein-coding
chr8.27695270.-	chr8	27695270	27695271	-	0	NA	promoter-TSS (NM_018492)	promoter-TSS (NM_018492)	-79	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
chr20.55965390.-	chr20	55965390	55965391	-	0	NA	"intron (NR_039970, intron 1 of 2)"	"intron (NR_039970, intron 1 of 2)"	1064	NM_017495	55544	Hs.236361	NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
chr2.70416500.+	chr2	70416500	70416501	+	0	NA	"intron (NM_017880, intron 1 of 9)"	AluSp|SINE|Alu	1651	NM_017880	54980	Hs.720049	NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
chr1.150158688.-	chr1	150158688	150158689	-	0	NA	Intergenic	AluY|SINE|Alu	-36518	NM_016274	51177	Hs.438824	NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|OC120	"pleckstrin homology domain containing, family O member 1"	protein-coding
chr17.42869164.+	chr17	42869164	42869165	+	0	NA	Intergenic	AluY|SINE|Alu	32596	NM_002390	4185	Hs.6088	NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
chr3.88595896.-	chr3	88595896	88595897	-	0	NA	Intergenic	AluSc8|SINE|Alu	396880	NM_001195308	8545	Hs.444818	NM_001008390	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
chr11.17229830.-	chr11	17229830	17229831	-	0	NA	Intergenic	CpG	38476	NM_002645	5286	Hs.175343	NM_002645	ENSG00000011405	PIK3C2A	CPK|PI3-K-C2(ALPHA)|PI3-K-C2A	"phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha"	protein-coding
chr17.2726586.+	chr17	2726586	2726587	+	0	NA	"intron (NM_015085, intron 2 of 24)"	"intron (NM_015085, intron 2 of 24)"	26854	NM_001100398	23108	Hs.499659	NM_001100398	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
chr1.114299528.+	chr1	114299528	114299529	+	0	NA	"intron (NM_006608, intron 2 of 17)"	AluY|SINE|Alu	2249	NM_006608	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
chr19.23432225.+	chr19	23432225	23432226	+	0	NA	"intron (NR_045525, intron 1 of 3)"	AluSx3|SINE|Alu	947	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr14.80915468.-	chr14	80915468	80915469	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	218071	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr19.22037723.+	chr19	22037723	22037724	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2853	NM_001256653	7594	Hs.534365	NM_001256648	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
chr2.71559426.-	chr2	71559426	71559427	-	0	NA	"intron (NM_014497, intron 1 of 27)"	CpG	-541	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr20.133426.-	chr20	133426	133427	-	0	NA	Intergenic	AluJr|SINE|Alu	4685	NM_139074	140850	Hs.99362	NM_139074	ENSG00000088782	DEFB127	C20orf73|DEF-27|DEFB-27|DEFB27|bA530N10.2|hBD-27	"defensin, beta 127"	protein-coding
chr2.101214232.+	chr2	101214232	101214233	+	0	NA	Intergenic	MER8|DNA|TcMar-Tigger	34814	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
chr8.67618019.+	chr8	67618019	67618020	+	0	NA	"intron (NM_001204173, intron 3 of 18)"	AluSz|SINE|Alu	-6634	NM_001033578	23678	Hs.733251	NM_001033578	ENSG00000104205	SGK3	CISK|SGK2|SGKL	"serum/glucocorticoid regulated kinase family, member 3"	protein-coding
chr21.37865449.+	chr21	37865449	37865450	+	0	NA	"intron (NM_001146077, intron 2 of 2)"	"intron (NM_001146077, intron 2 of 2)"	-13061	NM_001146079	23562	Hs.741857	NM_001146077	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
chr19.35225094.+	chr19	35225094	35225095	+	0	NA	promoter-TSS (NM_001029997)	promoter-TSS (NM_001029997)	-386	NM_001029997	339318	Hs.720472	NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
chr9.140715906.-	chr9	140715906	140715907	-	0	NA	"intron (NM_024757, intron 25 of 26)"	AluJr|SINE|Alu	16965	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	miscRNA
chr5.89746547.+	chr5	89746547	89746548	+	0	NA	Intergenic	AluSz|SINE|Alu	24038	NM_203406	153364	Hs.64004	NM_203406	ENSG00000176055	MBLAC2	-	metallo-beta-lactamase domain containing 2	protein-coding
chr18.74225003.-	chr18	74225003	74225004	-	0	NA	Intergenic	AluY|SINE|Alu	15609	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LOC284276	-	uncharacterized LOC284276	miscRNA
chr17.77752268.-	chr17	77752268	77752269	-	0	NA	"intron (NM_032647, intron 2 of 3)"	CpG-11229	-291	NM_032647	84733	Hs.368410	NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox homolog 2	protein-coding
chr1.2615600.-	chr1	2615600	2615601	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	51119	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr12.118663796.+	chr12	118663796	118663797	+	0	NA	"intron (NM_016281, intron 9 of 20)"	AluSx|SINE|Alu	89926	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
chr3.102973952.-	chr3	102973952	102973953	-	0	NA	Intergenic	SVA_D|Other|Other	-820093	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr11.9479421.+	chr11	9479421	9479422	+	0	NA	Intergenic	AluSg|SINE|Alu	2824	NR_036539	644656	Hs.597846	NR_036539		LOC644656	-	uncharacterized LOC644656	miscRNA
chr22.51001375.-	chr22	51001375	51001376	-	0	NA	promoter-TSS (NM_001123225)	promoter-TSS (NM_001123225)	47	NM_001123225	644186	Hs.535660	NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
chr7.936478.-	chr7	936478	936479	-	0	NA	TTS (NM_015949)	TTS (NM_015949)	-20287	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
chr12.54699000.-	chr12	54699000	54699001	-	0	NA	Intergenic	AluSx1|SINE|Alu	4179	NM_001261461	4778	Hs.75643	NM_001136023	ENSG00000123405	NFE2	NF-E2|p45	"nuclear factor (erythroid-derived 2), 45kDa"	protein-coding
chr9.34070254.+	chr9	34070254	34070255	+	0	NA	Intergenic	AluSz|SINE|Alu	-21307	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr7.157337081.+	chr7	157337081	157337082	+	0	NA	"intron (NM_130842, intron 21 of 21)"	"intron (NM_130842, intron 21 of 21)"	30033	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr6.157734044.+	chr6	157734044	157734045	+	0	NA	"intron (NM_018452, intron 3 of 3)"	"intron (NM_018452, intron 3 of 3)"	11209	NM_018452	729515	Hs.157212	NM_018452		TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
chr10.43892556.+	chr10	43892556	43892557	+	0	NA	promoter-TSS (NM_001098208)	promoter-TSS (NM_001098208)	238	NM_001098207	3185	Hs.712955	NM_001098204	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
chr19.9968045.-	chr19	9968045	9968046	-	0	NA	"exon (NM_058164, exon 4 of 6)"	"exon (NM_058164, exon 4 of 6)"	-22162	NR_038422	5300	Hs.465849	NM_006221	ENSG00000127445	PIN1	DOD|UBL5	"peptidylprolyl cis/trans isomerase, NIMA-interacting 1"	protein-coding
chr17.18829187.-	chr17	18829187	18829188	-	0	NA	"intron (NM_001243940, intron 9 of 9)"	AluY|SINE|Alu	24802	NR_073067	125206	Hs.462418	NM_001042450	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	"solute carrier family 5 (sodium/glucose cotransporter), member 10"	protein-coding
chr14.74438932.-	chr14	74438932	74438933	-	0	NA	"intron (NM_001249, intron 13 of 15)"	AluSg|SINE|Alu	21815	NM_152445	145483	Hs.660789	NM_152445	ENSG00000156050	FAM161B	C14orf44|c14_5547	"family with sequence similarity 161, member B"	protein-coding
chr20.33062699.-	chr20	33062699	33062700	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8569	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chrY.15683490.-	chrY	15683490	15683491	-	0	NA	Intergenic	AluYb8|SINE|Alu	90940	NR_047601	7404	Hs.115277	NM_001258249	ENSG00000183878	UTY	UTY1	"ubiquitously transcribed tetratricopeptide repeat containing, Y-linked"	protein-coding
chr12.120874309.+	chr12	120874309	120874310	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1584	NM_004373	1337	Hs.369624	NM_004373	ENSG00000111775	COX6A1	COX6A|COX6AL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding
chr19.19490945.+	chr19	19490945	19490946	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5697	NM_017660	54815	Hs.118964	NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
chr4.55015825.-	chr4	55015825	55015826	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-49577	NM_133267	170825	Hs.371899	NM_133267		GSX2	GSH2	GS homeobox 2	protein-coding
chr2.43254207.-	chr2	43254207	43254208	-	0	NA	Intergenic	Intergenic	-199538	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr2.183551389.-	chr2	183551389	183551390	-	0	NA	Intergenic	L1PA5|LINE|L1	29379	NR_073365	54431	Hs.744512	NM_001271581		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	"DnaJ (Hsp40) homolog, subfamily C, member 10"	protein-coding
chr2.10952995.-	chr2	10952995	10952996	-	0	NA	promoter-TSS (NM_005742)	promoter-TSS (NM_005742)	35	NM_005742	10130	Hs.212102	NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	"protein disulfide isomerase family A, member 6"	protein-coding
chr16.67519962.+	chr16	67519962	67519963	+	0	NA	Intergenic	AluY|SINE|Alu	-2246	NM_001138	181	Hs.104633	NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related protein homolog (mouse)	protein-coding
chr4.52709460.-	chr4	52709460	52709461	-	0	NA	"intron (NM_001040402, intron 1 of 10)"	CpG	-184	NM_001040402	23142	Hs.605388	NM_001040402	ENSG00000109184	DCUN1D4	-	"DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)"	protein-coding
chr16.31448995.-	chr16	31448995	31448996	-	0	NA	"intron (NM_001136509, intron 1 of 1)"	AluSx1|SINE|Alu	-5353	NM_001136509	283933	Hs.722243	NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
chr5.178452979.+	chr5	178452979	178452980	+	0	NA	"intron (NM_001136116, intron 2 of 4)"	AluSc|SINE|Alu	2203	NM_001136116	345462	Hs.445740	NM_001136116		ZNF879	DKFZp686E2433	zinc finger protein 879	protein-coding
chr5.179119115.+	chr5	179119115	179119116	+	0	NA	Intergenic	AluSz|SINE|Alu	-6815	NM_001024649	821	Hs.567968	NM_001024649	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
chr20.62108059.-	chr20	62108059	62108060	-	0	NA	Intergenic	AluSq2|SINE|Alu	4066	NM_172108	3785	Hs.652468	NM_004518	ENSG00000075043	KCNQ2	BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1	"potassium voltage-gated channel, KQT-like subfamily, member 2"	protein-coding
chr17.5148714.-	chr17	5148714	5148715	-	0	NA	Intergenic	AluSq|SINE|Alu	10559	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr2.32250836.+	chr2	32250836	32250837	+	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	14008	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr7.1587820.+	chr7	1587820	1587821	+	0	NA	"intron (NM_001097620, intron 7 of 8)"	"intron (NM_001097620, intron 7 of 8)"	8246	NM_001097620	202915	Hs.707784	NM_152689		TMEM184A	-	transmembrane protein 184A	protein-coding
chr16.89034097.+	chr16	89034097	89034098	+	0	NA	"intron (NM_005187, intron 1 of 11)"	CpG	9407	NM_005187	863	Hs.513811	NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|ZMYND4	"core-binding factor, runt domain, alpha subunit 2; translocated to, 3"	protein-coding
chr20.48813679.+	chr20	48813679	48813680	+	0	NA	Intergenic	Intergenic	6559	NM_005194	1051	Hs.720603	NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|CRP2|IL6DBP|LAP|NF-IL6|TCF5	"CCAAT/enhancer binding protein (C/EBP), beta"	protein-coding
chr2.132272962.-	chr2	132272962	132272963	-	0	NA	"intron (NR_026922, intron 10 of 17)"	"intron (NR_026922, intron 10 of 17)"	12445	NM_001258306	90557	Hs.351461	NM_001258304	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
chr13.100353716.+	chr13	100353716	100353717	+	0	NA	"intron (NM_206808, intron 1 of 8)"	AluY|SINE|Alu	58403	NR_036191	100422861		NR_036191		MIR4306	-	microRNA 4306	miscRNA
chr20.19987633.+	chr20	19987633	19987634	+	0	NA	Intergenic	AluY|SINE|Alu	-10301	NM_181528	51126	Hs.708298	NM_016100	ENSG00000173418	NAA20	NAT3|NAT5|dJ1002M8.1	"N(alpha)-acetyltransferase 20, NatB catalytic subunit"	protein-coding
chr21.45566108.-	chr21	45566108	45566109	-	0	NA	TTS (NM_198155)	TTS (NM_198155)	-12614	NM_004649	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
chr20.47588414.+	chr20	47588414	47588415	+	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	50139	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr2.38825086.+	chr2	38825086	38825087	+	0	NA	"intron (NM_001142650, intron 2 of 13)"	AluSg7|SINE|Alu	5092	NM_138394	92906	Hs.445497	NM_001142650	ENSG00000143889	HNRPLL	SRRF|hnRNPLL	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chr10.64708097.-	chr10	64708097	64708098	-	0	NA	Intergenic	SVA_E|Other|Other	129170	NM_001136178	1959	Hs.1395	NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
chr9.14963532.-	chr9	14963532	14963533	-	0	NA	Intergenic	LTR12_|LTR|ERV1	29793	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
chr2.132195165.+	chr2	132195165	132195166	+	0	NA	Intergenic	AluY|SINE|Alu	7302	NR_002826	401010	Hs.452369	NR_002826	ENSG00000217950	LOC401010	-	nucleolar complex associated 2 homolog (S. cerevisiae) pseudogene	pseudo
chr8.95668707.-	chr8	95668707	95668708	-	0	NA	"intron (NM_001034915, intron 4 of 15)"	AluSc8|SINE|Alu	-15343	NM_001122826	54845	Hs.487471	NM_001034915	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
chr7.56109602.-	chr7	56109602	56109603	-	0	NA	"intron (NM_004577, intron 1 of 7)"	AluSz6|SINE|Alu	-9666	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
chr5.693687.+	chr5	693687	693688	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-177	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
chrX.70362683.+	chrX	70362683	70362684	+	0	NA	TTS (NM_005120)	TTS (NM_005120)	-1998	NM_018977	54413	Hs.438877	NM_001166660	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
chr5.86907864.+	chr5	86907864	86907865	+	0	NA	Intergenic	AluY|SINE|Alu	-199014	NM_001239	902	Hs.292524	NM_001199189	ENSG00000134480	CCNH	CAK|p34|p37	cyclin H	protein-coding
chr6.333810.+	chr6	333810	333811	+	0	NA	"intron (NM_020185, intron 3 of 7)"	"intron (NM_020185, intron 3 of 7)"	41709	NM_020185	56940	Hs.29106	NM_020185		DUSP22	JKAP|JSP1|LMWDSP2|MKPX|VHX	dual specificity phosphatase 22	protein-coding
chr7.66480033.+	chr7	66480033	66480034	+	0	NA	"intron (NM_018264, intron 5 of 15)"	AluSx1|SINE|Alu	18241	NM_018264	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chr17.46187024.-	chr17	46187024	46187025	-	0	NA	"intron (NM_013323, intron 1 of 6)"	AluSx3|SINE|Alu	-2077	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
chrX.15337020.-	chrX	15337020	15337021	-	0	NA	TTS (NM_002641)	TTS (NM_002641)	3274	NM_001201583	140456	Hs.352183	NM_001012428	ENSG00000165192	ASB11	-	ankyrin repeat and SOCS box containing 11	protein-coding
chr22.24237327.+	chr22	24237327	24237328	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	762	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr4.184656688.-	chr4	184656688	184656689	-	0	NA	Intergenic	SVA_E|Other|Other	-76268	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY	trafficking protein particle complex 11	protein-coding
chr2.25390979.+	chr2	25390979	25390980	+	0	NA	"intron (NM_001035256, intron 1 of 3)"	AluSp|SINE|Alu	580	NM_000939	5443	Hs.1897	NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
chr12.83080480.+	chr12	83080480	83080481	+	0	NA	promoter-TSS (NM_152588)	promoter-TSS (NM_152588)	-454	NM_152588	160335	Hs.577775	NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chr22.22002133.+	chr22	22002133	22002134	+	0	NA	Intergenic	AluY|SINE|Alu	-5137	NR_030622	100126318		NR_030622	ENSG00000212102	MIR301B	MIRN301B	microRNA 301b	miscRNA
chr1.218165388.-	chr1	218165388	218165389	-	0	NA	Intergenic	AluSq|SINE|Alu	-99146	NR_048550	100885798	Hs.434632	NR_048550	ENSG00000231814	LINC00210	NCRNA00210	long intergenic non-protein coding RNA 210	miscRNA
chr8.7414170.+	chr8	7414170	7414171	+	0	NA	"non-coding (NR_046343, exon 3 of 3)"	"non-coding (NR_046343, exon 3 of 3)"	2456	NR_046343	441317	Hs.715411	NM_001136572		FAM90A7P	FAM90A7	putative protein FAM90A7	pseudo
chr16.86337862.+	chr16	86337862	86337863	+	0	NA	Intergenic	CpG	17825	NR_038438	146513	Hs.434338	NR_038438	ENSG00000268532	LOC146513	-	uncharacterized LOC146513	miscRNA
chr6.153089610.+	chr6	153089610	153089611	+	0	NA	Intergenic	AluY|SINE|Alu	17678	NM_003381	7432	Hs.53973	NM_003381	ENSG00000146469	VIP	PHM27	vasoactive intestinal peptide	protein-coding
chr6.43016763.+	chr6	43016763	43016764	+	0	NA	"intron (NM_001168370, intron 7 of 25)"	AluY|SINE|Alu	4920	NM_001168370	9820	Hs.520136	NM_001168370	ENSG00000044090	CUL7	KIAA0076|dJ20C7.5	cullin 7	protein-coding
chr12.106606500.-	chr12	106606500	106606501	-	0	NA	Intergenic	L1PA7|LINE|L1	-35213	NM_006825	10970	Hs.74368	NM_006825	ENSG00000136026	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
chr12.132372568.-	chr12	132372568	132372569	-	0	NA	Intergenic	AluSx|SINE|Alu	6711	NM_003565	8408	Hs.47061	NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51-like kinase 1 (C. elegans)	protein-coding
chr14.23706392.-	chr14	23706392	23706393	-	0	NA	Intergenic	AluSz|SINE|Alu	-48917	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
chr4.55525072.+	chr4	55525072	55525073	+	0	NA	"intron (NM_001093772, intron 1 of 20)"	CpG	977	NM_001093772	3815	Hs.479754	NM_000222	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
chr1.45948981.-	chr1	45948981	45948982	-	0	NA	"intron (NM_007170, intron 1 of 10)"	AluY|SINE|Alu	-7859	NM_007170	10420	Hs.591499	NM_007170	ENSG00000070759	TESK2	-	testis-specific kinase 2	protein-coding
chr10.32599989.-	chr10	32599989	32599990	-	0	NA	"intron (NR_073538, intron 1 of 13)"	AluY|SINE|Alu	-36157	NM_001272004	80314	Hs.743354	NM_001272004	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1 (Drosophila)	protein-coding
chr1.217314041.+	chr1	217314041	217314042	+	0	NA	Intergenic	Intergenic	-2944	NM_001134285	2104	Hs.738938	NM_001134285	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
chr12.49856954.+	chr12	49856954	49856955	+	0	NA	"intron (NM_023071, intron 3 of 13)"	AluY|SINE|Alu	73997	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
chr12.66636791.-	chr12	66636791	66636792	-	0	NA	"intron (NM_001142523, intron 7 of 10)"	AluSq2|SINE|Alu	-53813	NM_007199	11213	Hs.369265	NM_001142523	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin-1 receptor-associated kinase 3	protein-coding
chr1.223538458.-	chr1	223538458	223538459	-	0	NA	promoter-TSS (NM_017982)	promoter-TSS (NM_017982)	914	NM_001037175	55061	Hs.497841	NM_001037175	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
chr7.157413805.+	chr7	157413805	157413806	+	0	NA	"intron (NM_130842, intron 14 of 21)"	"intron (NM_130842, intron 14 of 21)"	-46691	NR_029689	406945		NR_029689		MIR153-2	MIRN153-2	microRNA 153-2	miscRNA
chr18.60740406.+	chr18	60740406	60740407	+	0	NA	Intergenic	AluYb8|SINE|Alu	246207	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
chr2.190445765.-	chr2	190445765	190445766	-	0	NA	promoter-TSS (NM_014585)	promoter-TSS (NM_014585)	228	NM_014585	30061	Hs.643005	NM_014585	ENSG00000138449	SLC40A1	FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3	"solute carrier family 40 (iron-regulated transporter), member 1"	protein-coding
chr5.1137718.-	chr5	1137718	1137719	-	0	NA	Intergenic	Intergenic	25546	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr11.45810309.-	chr11	45810309	45810310	-	0	NA	Intergenic	AluSz6|SINE|Alu	15314	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr22.22259645.-	chr22	22259645	22259646	-	0	NA	Intergenic	AluSq2|SINE|Alu	37675	NM_002745	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk	mitogen-activated protein kinase 1	protein-coding
chr20.49473893.-	chr20	49473893	49473894	-	0	NA	"intron (NM_198799, intron 4 of 4)"	AluSp|SINE|Alu	-62426	NM_001010974	55653	Hs.381178	NM_001010974	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
chr19.2400861.-	chr19	2400861	2400862	-	0	NA	"intron (NM_182973, intron 3 of 16)"	AluSx1|SINE|Alu	-11077	NM_182973	360200	Hs.465560	NM_182973	ENSG00000178297	TMPRSS9	-	"transmembrane protease, serine 9"	protein-coding
chrX.129231000.-	chrX	129231000	129231001	-	0	NA	"intron (NM_001127197, intron 1 of 8)"	FLAM_C|SINE|Alu	-13475	NM_001421	2000	Hs.271940	NM_001127197	ENSG00000102034	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
chr14.23233330.+	chr14	23233330	23233331	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2401	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
chr3.114903234.+	chr3	114903234	114903235	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37107	NM_015642	26137	Hs.655108	NM_001164342	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
chr2.21484562.-	chr2	21484562	21484563	-	0	NA	Intergenic	Intergenic	217617	NM_000384	338	Hs.120759	NM_000384	ENSG00000084674	APOB	FLDB|LDLCQ4	apolipoprotein B (including Ag(x) antigen)	protein-coding
chr4.26862248.+	chr4	26862248	26862249	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-65	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr17.11197486.+	chr17	11197486	11197487	+	0	NA	"intron (NM_001173461, intron 2 of 3)"	AluSc|SINE|Alu	52746	NM_001173462	388336	Hs.592124	NM_175903	ENSG00000188803	SHISA6	-	shisa homolog 6 (Xenopus laevis)	protein-coding
chr2.127548503.-	chr2	127548503	127548504	-	0	NA	Intergenic	AluY|SINE|Alu	-134992	NM_002101	2995	Hs.59138	NM_001256584	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
chr2.122475127.-	chr2	122475127	122475128	-	0	NA	"intron (NR_037857, intron 3 of 3)"	AluSq2|SINE|Alu	-19376	NM_032390	84365	Hs.367842	NM_032390	ENSG00000155438	MKI67IP	NIFK|Nopp34	MKI67 (FHA domain) interacting nucleolar phosphoprotein	protein-coding
chr5.14460462.-	chr5	14460462	14460463	-	0	NA	"intron (NM_007118, intron 34 of 56)"	"intron (NM_007118, intron 34 of 56)"	121429	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	"family with sequence similarity 105, member A"	protein-coding
chr2.17818511.+	chr2	17818511	17818512	+	0	NA	"intron (NM_003385, intron 2 of 3)"	"intron (NM_003385, intron 2 of 3)"	96704	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
chr4.84864628.+	chr4	84864628	84864629	+	0	NA	Intergenic	SVA_D|Other|Other	407158	NM_032717	84803	Hs.99196	NM_001256421	ENSG00000138678	AGPAT9	AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chrX.53111609.-	chrX	53111609	53111610	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-67	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr22.20255612.-	chr22	20255612	20255613	-	0	NA	"exon (NM_023004, exon 1 of 2)"	"exon (NM_023004, exon 1 of 2)"	-204	NM_023004	65078	Hs.30868	NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
chr7.2716348.-	chr7	2716348	2716349	-	0	NA	Intergenic	Intergenic	2815	NM_133463	155185	Hs.42221	NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
chr4.2538070.+	chr4	2538070	2538071	+	0	NA	Intergenic	CpG	66890	NM_001185009	6047	Hs.740360	NM_001185009	ENSG00000063978	RNF4	SLX5|SNURF	ring finger protein 4	protein-coding
chr13.111268284.-	chr13	111268284	111268285	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-353	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr10.71044950.-	chr10	71044950	71044951	-	0	NA	"intron (NM_033500, intron 2 of 21)"	AluY|SINE|Alu	-15194	NM_033497	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK1-ta|HK1-tb|HK1-tc|HKI|HXK1	hexokinase 1	protein-coding
chr16.89117866.+	chr16	89117866	89117867	+	0	NA	Intergenic	Intergenic	-42351	NM_001243279	197322	Hs.720526	NM_001127214	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
chr11.45810303.+	chr11	45810303	45810304	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15320	NM_001145265	55343	Hs.12211	NM_001145265	ENSG00000181830	SLC35C1	CDG2C|FUCT1	"solute carrier family 35, member C1"	protein-coding
chr2.232202240.-	chr2	232202240	232202241	-	0	NA	"intron (NM_025139, intron 20 of 20)"	AluYa5|SINE|Alu	25179	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	miscRNA
chr1.215227173.-	chr1	215227173	215227174	-	0	NA	"intron (NM_001017424, intron 1 of 6)"	AluSz6|SINE|Alu	29387	NM_001017425	3776	Hs.497745	NM_001017424	ENSG00000082482	KCNK2	K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e	"potassium channel, subfamily K, member 2"	protein-coding
chr16.2255538.+	chr16	2255538	2255539	+	0	NA	promoter-TSS (NM_001199174)	promoter-TSS (NM_001199174)	-194	NM_001199174	64223	Hs.29203	NM_001199173	ENSG00000167965	MLST8	GBL|GbetaL|LST8|POP3|WAT1	"MTOR associated protein, LST8 homolog (S. cerevisiae)"	protein-coding
chr15.41708256.+	chr15	41708256	41708257	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1046	NM_015138	23168	Hs.511096	NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	"Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)"	protein-coding
chr9.108210536.-	chr9	108210536	108210537	-	0	NA	"intron (NM_031919, intron 1 of 3)"	CpG	-211	NM_207647	83856	Hs.136901	NM_001145313	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1-like	protein-coding
chr16.88387052.+	chr16	88387052	88387053	+	0	NA	Intergenic	L2b|LINE|L2	-106827	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS	zinc finger protein 469	protein-coding
chr7.121013899.+	chr7	121013899	121013900	+	0	NA	"intron (NM_001040020, intron 3 of 9)"	AluY|SINE|Alu	22523	NM_014888	10447	Hs.434053	NM_001040020	ENSG00000196937	FAM3C	ILEI	"family with sequence similarity 3, member C"	protein-coding
chr11.71878755.+	chr11	71878755	71878756	+	0	NA	Intergenic	AluSx|SINE|Alu	-21847	NM_016725	2348	Hs.73769	NM_000802	ENSG00000110195	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
chr2.120282019.-	chr2	120282019	120282020	-	0	NA	promoter-TSS (NM_002980)	promoter-TSS (NM_002980)	-9	NM_002980	6344	Hs.42091	NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
chr16.84670310.+	chr16	84670310	84670311	+	0	NA	Intergenic	AluY|SINE|Alu	-11821	NM_024731	79786	Hs.578546	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch-like family member 36	protein-coding
chr17.63133424.+	chr17	63133424	63133425	+	0	NA	promoter-TSS (NM_001165933)	promoter-TSS (NM_001165933)	-32	NM_001165933	8787	Hs.664380	NM_001081955	ENSG00000108370	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
chr7.26294428.-	chr7	26294428	26294429	-	0	NA	Intergenic	AluSx1|SINE|Alu	37087	NM_013322	29887	Hs.741316	NM_001199835	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
chr20.45935918.+	chr20	45935918	45935919	+	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	-11328	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr15.91370853.-	chr15	91370853	91370854	-	0	NA	Intergenic	AluSz|SINE|Alu	41032	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr22.46303148.-	chr22	46303148	46303149	-	0	NA	Intergenic	L2c|LINE|L2	-69860	NM_058238	7477	Hs.512714	NM_058238	ENSG00000188064	WNT7B	-	"wingless-type MMTV integration site family, member 7B"	protein-coding
chr2.233477496.+	chr2	233477496	233477497	+	0	NA	"intron (NM_001243252, intron 1 of 3)"	AluSx|SINE|Alu	6729	NM_001243252	80303	Hs.744624	NM_001243252	ENSG00000115468	EFHD1	MST133|MSTP133|SWS2	"EF-hand domain family, member D1"	protein-coding
chr8.11030673.+	chr8	11030673	11030674	+	0	NA	"intron (NM_173683, intron 1 of 2)"	AluY|SINE|Alu	28202	NM_173683	286046	Hs.666146	NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	"XK, Kell blood group complex subunit-related family, member 6"	protein-coding
chr12.9892339.+	chr12	9892339	9892340	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6444	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr7.128142000.-	chr7	128142000	128142001	-	0	NA	"3' UTR (NM_018396, exon 9 of 9)"	"3' UTR (NM_018396, exon 9 of 9)"	-25217	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
chrX.18373417.+	chrX	18373417	18373418	+	0	NA	promoter-TSS (NM_006089)	promoter-TSS (NM_006089)	-573	NR_033717	10389	Hs.495774	NM_006089	ENSG00000102098	SCML2	-	sex comb on midleg-like 2 (Drosophila)	protein-coding
chr19.41641945.-	chr19	41641945	41641946	-	0	NA	Intergenic	CpG	-21592	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr17.43255864.-	chr17	43255864	43255865	-	0	NA	Intergenic	AluY|SINE|Alu	-17600	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr22.24237305.+	chr22	24237305	24237306	+	0	NA	"non-coding (NR_038911, exon 3 of 3)"	"non-coding (NR_038911, exon 3 of 3)"	740	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
chr3.125174740.-	chr3	125174740	125174741	-	0	NA	"intron (NR_073435, intron 10 of 12)"	AluY|SINE|Alu	-64318	NM_003794	8723	Hs.507243	NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
chr7.157129491.+	chr7	157129491	157129492	+	0	NA	promoter-TSS (NM_005494)	promoter-TSS (NM_005494)	-219	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1	"DnaJ (Hsp40) homolog, subfamily B, member 6"	protein-coding
chr22.20137572.-	chr22	20137572	20137573	-	0	NA	promoter-TSS (NM_001243537)	promoter-TSS (NM_001243537)	141	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
chr2.198058472.+	chr2	198058472	198058473	+	0	NA	"intron (NM_153697, intron 1 of 9)"	AluY|SINE|Alu	117049	NM_001195144	91526	Hs.432706	NM_001195144	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chr6.151771590.-	chr6	151771590	151771591	-	0	NA	"intron (NM_017909, intron 1 of 11)"	SVA_D|Other|Other	-1726	NM_017909	55005	Hs.744622	NM_001271937	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog (S. cerevisiae)	protein-coding
chr16.56691676.+	chr16	56691676	56691677	+	0	NA	promoter-TSS (NM_005949)	promoter-TSS (NM_005949)	-179	NM_005949	4494	Hs.513626	NM_005949	ENSG00000198417	MT1F	MT1	metallothionein 1F	protein-coding
chr19.39915292.-	chr19	39915292	39915293	-	0	NA	"exon (NM_022835, exon 19 of 19)"	"exon (NM_022835, exon 19 of 19)"	-11326	NM_001020	6217	Hs.397609	NM_001020	ENSG00000105193	RPS16	S16	ribosomal protein S16	protein-coding
chr8.145690546.+	chr8	145690546	145690547	+	0	NA	promoter-TSS (NM_138496)	promoter-TSS (NM_138496)	-128	NM_138496	50626	Hs.459379	NM_001129888	ENSG00000187954	CYHR1	CHRP	cysteine/histidine-rich 1	protein-coding
chr4.26862283.+	chr4	26862283	26862284	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-30	NM_001169117	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr15.91370858.-	chr15	91370858	91370859	-	0	NA	Intergenic	AluSz|SINE|Alu	41027	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
chr2.191296182.+	chr2	191296182	191296183	+	0	NA	"intron (NM_017694, intron 2 of 7)"	SVA_D|Other|Other	23101	NM_017694	54842	Hs.744117	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
chr15.20244672.+	chr15	20244672	20244673	+	0	NA	Intergenic	AluSp|SINE|Alu	-243325	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
chr16.1228086.+	chr16	1228086	1228087	+	0	NA	"intron (NM_021098, intron 2 of 34)"	C-rich|Low_complexity|Low_complexity	24845	NM_001005407	8912	Hs.459642	NM_001005407	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	"calcium channel, voltage-dependent, T type, alpha 1H subunit"	protein-coding
chr12.132116825.+	chr12	132116825	132116826	+	0	NA	Intergenic	L1ME1|LINE|L1	-78807	NM_004592	6433	Hs.308171	NM_001261411	ENSG00000061936	SFSWAP	SFRS8|SWAP	"splicing factor, suppressor of white-apricot homolog (Drosophila)"	protein-coding
chr1.28003882.-	chr1	28003882	28003883	-	0	NA	Intergenic	AluY|SINE|Alu	5158	NM_002038	2537	Hs.730125	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	"interferon, alpha-inducible protein 6"	protein-coding
chr7.1001914.-	chr7	1001914	1001915	-	0	NA	Intergenic	Intergenic	7625	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr19.53852718.+	chr19	53852718	53852719	+	0	NA	"intron (NM_138374, intron 3 of 3)"	AluY|SINE|Alu	15716	NM_138374	91664	Hs.720672	NM_138374	ENSG00000213799	ZNF845	-	zinc finger protein 845	protein-coding
chr16.755968.+	chr16	755968	755969	+	0	NA	promoter-TSS (NM_153350)	promoter-TSS (NM_153350)	-143	NM_153350	146330	Hs.513244	NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine-rich repeat protein 16	protein-coding
chr2.74351414.+	chr2	74351414	74351415	+	0	NA	Intergenic	SVA_B|Other|Other	23625	NM_212552	388962	Hs.61472	NM_001035505	ENSG00000163170	BOLA3	MMDS2	bolA homolog 3 (E. coli)	protein-coding
chr14.102109509.-	chr14	102109509	102109510	-	0	NA	Intergenic	AluY|SINE|Alu	-81821	NM_001362	1735	Hs.49322	NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	"deiodinase, iodothyronine, type III"	protein-coding
chr7.1798871.-	chr7	1798871	1798872	-	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50073	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
chr15.89714216.-	chr15	89714216	89714217	-	0	NA	"intron (NM_007011, intron 9 of 14)"	AluSq|SINE|Alu	-50706	NM_000326	6017	Hs.1933	NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
chr17.9053909.+	chr17	9053909	9053910	+	0	NA	"intron (NM_004822, intron 2 of 6)"	"intron (NM_004822, intron 2 of 6)"	129050	NM_004822	9423	Hs.660885	NM_004822	ENSG00000065320	NTN1	NTN1L	netrin 1	protein-coding
chr18.33543824.-	chr18	33543824	33543825	-	0	NA	Intergenic	AluY|SINE|Alu	8764	NM_031446	83608	Hs.37883	NM_001201474	ENSG00000141428	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
chr14.77227747.-	chr14	77227747	77227748	-	0	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	488	NM_014909	22846	Hs.525479	NM_014909	ENSG00000071246	VASH1	KIAA1036	vasohibin 1	protein-coding
chr6.166934801.-	chr6	166934801	166934802	-	0	NA	"intron (NM_001006932, intron 4 of 21)"	"intron (NM_001006932, intron 4 of 21)"	11880	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	miscRNA
chr11.66997289.+	chr11	66997289	66997290	+	0	NA	"intron (NM_012308, intron 11 of 20)"	AluSg|SINE|Alu	-10217	NM_001256405	22992	Hs.124147	NM_001256405		KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
chr11.62551842.-	chr11	62551842	62551843	-	0	NA	"intron (NM_006473, intron 9 of 10)"	AluY|SINE|Alu	3032	NM_199337	374395	Hs.381134	NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
chr6.46742363.-	chr6	46742363	46742364	-	0	NA	Intergenic	LTR12C|LTR|ERV1	18731	NM_005588	4224	Hs.179704	NM_005588	ENSG00000112818	MEP1A	PPHA	"meprin A, alpha (PABA peptide hydrolase)"	protein-coding
chr2.71562011.-	chr2	71562011	71562012	-	0	NA	"intron (NM_014497, intron 1 of 27)"	AluY|SINE|Alu	-3126	NM_001014972	27332	Hs.732823	NM_001014972	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
chr19.11060484.+	chr19	11060484	11060485	+	0	NA	Intergenic	AluY|SINE|Alu	-11114	NM_003072	6597	Hs.327527	NM_001128844	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4"	protein-coding
chr5.171395338.+	chr5	171395338	171395339	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38539	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr10.116501249.+	chr10	116501249	116501250	+	0	NA	Intergenic	AluY|SINE|Alu	-56835	NM_001003407	3983	Hs.593868	NM_001003407	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
chr1.161879498.+	chr1	161879498	161879499	+	0	NA	"intron (NM_007348, intron 14 of 15)"	AluY|SINE|Alu	114146	NM_015441	25903	Hs.507515	NM_015441	ENSG00000162745	OLFML2B	RP11-227F8.1	olfactomedin-like 2B	protein-coding
chr3.160283637.-	chr3	160283637	160283638	-	0	NA	promoter-TSS (NM_002268)	promoter-TSS (NM_002268)	261	NM_002268	3840	Hs.467866	NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin alpha 4 (importin alpha 3)	protein-coding
chr22.38498906.+	chr22	38498906	38498907	+	0	NA	"intron (NM_025045, intron 4 of 13)"	AluY|SINE|Alu	7770	NM_025045	80115	Hs.474822	NM_025045	ENSG00000128298	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
chr11.63682045.+	chr11	63682045	63682046	+	0	NA	"intron (NM_173587, intron 5 of 11)"	"intron (NM_173587, intron 5 of 11)"	2271	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
chr5.78890186.+	chr5	78890186	78890187	+	0	NA	Intergenic	AluY|SINE|Alu	-18057	NM_001114394	167153	Hs.418198	NM_001114393	ENSG00000164329	PAPD4	GLD2	PAP associated domain containing 4	protein-coding
chr17.5148740.-	chr17	5148740	5148741	-	0	NA	Intergenic	AluSq|SINE|Alu	10585	NM_001271842	388325	Hs.462080	NM_001271842		SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
chr2.137180734.+	chr2	137180734	137180735	+	0	NA	Intergenic	AluSq2|SINE|Alu	-305009	NM_003467	7852	Hs.593413	NM_001008540	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
chr18.19630103.-	chr18	19630103	19630104	-	0	NA	Intergenic	AluY|SINE|Alu	119301	NM_005257	2627	Hs.741506	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
chr14.23701971.+	chr14	23701971	23701972	+	0	NA	Intergenic	SVA_C|Other|Other	-49102	NM_012244	23428	Hs.596643	NM_001267036	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	"solute carrier family 7 (amino acid transporter light chain, L system), member 8"	protein-coding
chr12.33592862.+	chr12	33592862	33592863	+	0	NA	promoter-TSS (NM_198992)	promoter-TSS (NM_198992)	-108	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
chr2.10733419.+	chr2	10733419	10733420	+	0	NA	"intron (NM_001261392, intron 16 of 19)"	AluSg|SINE|Alu	96694	NM_024894	79954	Hs.222494	NM_001261392	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
chr7.2518180.+	chr7	2518180	2518181	+	0	NA	Intergenic	Intergenic	-33983	NM_001166355	3955	Hs.159142	NM_001040167	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
chr14.80915372.-	chr14	80915372	80915373	-	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	217975	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chr1.42800515.-	chr1	42800515	42800516	-	0	NA	"intron (NM_001198851, intron 1 of 14)"	CpG	-121	NM_001198851	22887	Hs.26023	NM_001198850	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
chrX.40029588.-	chrX	40029588	40029589	-	0	NA	"intron (NM_001123383, intron 1 of 14)"	"intron (NM_001123383, intron 1 of 14)"	-6994	NM_001123383	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr3.36421986.+	chr3	36421986	36421987	+	0	NA	promoter-TSS (NM_003149)	promoter-TSS (NM_003149)	-111	NM_003149	6769	Hs.56045	NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
chr11.2051344.+	chr11	2051344	2051345	+	0	NA	Intergenic	Intergenic	-32279	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	"H19, imprinted maternally expressed transcript (non-protein coding)"	miscRNA
chrX.53123438.-	chrX	53123438	53123439	-	0	NA	Intergenic	CpG	-11896	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr16.73116290.+	chr16	73116290	73116291	+	0	NA	Intergenic	AluY|SINE|Alu	-9958	NR_027756	283902	Hs.382776	NM_001101347	ENSG00000260880	HTA	-	uncharacterized LOC283902	miscRNA
chr13.19728089.-	chr13	19728089	19728090	-	0	NA	Intergenic	Intergenic	-10967	NR_046927	100873761		NR_046927	ENSG00000252675	RNU6-52	-	"RNA, U6 small nuclear 52"	snRNA
chrX.86734354.+	chrX	86734354	86734355	+	0	NA	Intergenic	AluY|SINE|Alu	-38361	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr9.244000.-	chr9	244000	244001	-	0	NA	"intron (NM_203447, intron 1 of 47)"	AluY|SINE|Alu	28107	NM_152569	157983	Hs.190877	NM_152569	ENSG00000183784	C9orf66	RP11-59O6.1	chromosome 9 open reading frame 66	protein-coding
chr2.163018795.+	chr2	163018795	163018796	+	0	NA	Intergenic	AluSz|SINE|Alu	-9881	NM_002054	2641	Hs.741174	NM_002054	ENSG00000115263	GCG	GLP1|GLP2|GRPP	glucagon	protein-coding
chr17.80674793.-	chr17	80674793	80674794	-	0	NA	"intron (NM_024619, intron 1 of 5)"	CpG	-211	NM_024619	79672	Hs.31431	NM_024619	ENSG00000141560	FN3KRP	FN3KL	fructosamine 3 kinase related protein	protein-coding
chr8.143573141.+	chr8	143573141	143573142	+	0	NA	"intron (NM_001702, intron 16 of 29)"	"intron (NM_001702, intron 16 of 29)"	27764	NM_001702	575	Hs.194654	NM_001702	ENSG00000181790	BAI1	GDAIF	brain-specific angiogenesis inhibitor 1	protein-coding
chr9.37025514.-	chr9	37025514	37025515	-	0	NA	"intron (NM_016734, intron 1 of 9)"	CpG	-8962	NM_016734	5079	Hs.654464	NM_016734		PAX5	BSAP	paired box 5	protein-coding
chr2.95885044.+	chr2	95885044	95885045	+	0	NA	Intergenic	AluY|SINE|Alu	53861	NM_001017396	7549	Hs.590916	NM_001017396	ENSG00000163067	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
chr14.105332649.-	chr14	105332649	105332650	-	0	NA	"intron (NM_015005, intron 1 of 17)"	CpG	-999	NM_015005	283638	Hs.533721	NM_001112726	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
chr8.144504279.-	chr8	144504279	144504280	-	0	NA	Intergenic	Intergenic	-8323	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr5.172599811.-	chr5	172599811	172599812	-	0	NA	Intergenic	AluSc8|SINE|Alu	-28366	NM_013979	662	Hs.145726	NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2/adenovirus E1B 19kDa interacting protein 1	protein-coding
chr16.73116282.+	chr16	73116282	73116283	+	0	NA	Intergenic	AluY|SINE|Alu	-9966	NR_027756	283902	Hs.382776	NM_001101347	ENSG00000260880	HTA	-	uncharacterized LOC283902	miscRNA
chr7.130728517.+	chr7	130728517	130728518	+	0	NA	"intron (NR_024153, intron 1 of 2)"	AluSz|SINE|Alu	63272	NR_024153	378805	Hs.744176	NM_001085379	ENSG00000231721	FLJ43663	-	uncharacterized LOC378805	miscRNA
chr12.32064857.-	chr12	32064857	32064858	-	0	NA	Intergenic	AluY|SINE|Alu	47496	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35	KIAA1551	protein-coding
chrX.90204187.+	chrX	90204187	90204188	+	0	NA	Intergenic	AluY|SINE|Alu	-485410	NM_080832	140886	Hs.246590	NM_080832	ENSG00000174740	PABPC5	PABP5	"poly(A) binding protein, cytoplasmic 5"	protein-coding
chr11.1218152.+	chr11	1218152	1218153	+	0	NA	Intergenic	Intergenic	-26143	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr10.120427009.-	chr10	120427009	120427010	-	0	NA	Intergenic	AluSp|SINE|Alu	71849	NM_004248	2834	Hs.248119	NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
chr14.76577654.-	chr14	76577654	76577655	-	0	NA	Intergenic	AluSx1|SINE|Alu	40605	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr16.84754591.-	chr16	84754591	84754592	-	0	NA	"intron (NM_001272075, intron 2 of 14)"	AluSx1|SINE|Alu	-21036	NR_073578	9100	Hs.136778	NM_001272075	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
chr13.23713135.-	chr13	23713135	23713136	-	0	NA	Intergenic	AluY|SINE|Alu	41925	NM_000231	6445	Hs.37167	NM_000231	ENSG00000102683	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	"sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)"	protein-coding
chr5.171395385.-	chr5	171395385	171395386	-	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	-38492	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr17.77198166.-	chr17	77198166	77198167	-	0	NA	"intron (NM_001082575, intron 4 of 14)"	"intron (NM_001082575, intron 4 of 14)"	-127147	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
chr2.240371780.-	chr2	240371780	240371781	-	0	NA	Intergenic	SVA_D|Other|Other	49137	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr7.150812741.-	chr7	150812741	150812742	-	0	NA	"intron (NM_031946, intron 1 of 17)"	"intron (NM_031946, intron 1 of 17)"	-28915	NM_001042535	116988	Hs.647075	NM_001042535	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3"	protein-coding
chr17.4810674.-	chr17	4810674	4810675	-	0	NA	Intergenic	AluY|SINE|Alu	4305	NM_000080	1145	Hs.654535	NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	"cholinergic receptor, nicotinic, epsilon (muscle)"	protein-coding
chr11.89400714.-	chr11	89400714	89400715	-	0	NA	"intron (NM_153696, intron 2 of 13)"	AluSp|SINE|Alu	-8249	NM_153696	219595	Hs.645352	NM_153696		FOLH1B	FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL	folate hydrolase 1B	protein-coding
chr10.69822232.-	chr10	69822232	69822233	-	0	NA	"intron (NM_015601, intron 3 of 24)"	AluSx3|SINE|Alu	-12871	NM_015601	26091	Hs.51891	NM_001017972	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
chr1.53130049.-	chr1	53130049	53130050	-	0	NA	Intergenic	AluSp|SINE|Alu	-30983	NM_001042693	348378	Hs.424589	NM_182621	ENSG00000182183	FAM159A	PRO7171|WWLS2783	"family with sequence similarity 159, member A"	protein-coding
chr17.2323440.+	chr17	2323440	2323441	+	0	NA	"exon (NM_024086, exon 10 of 10)"	"exon (NM_024086, exon 10 of 10)"	-4710	NR_028335	284009	Hs.632244	NR_028335		LOC284009	-	uncharacterized LOC284009	miscRNA
chr11.33110418.+	chr11	33110418	33110419	+	0	NA	"intron (NM_001326, intron 17 of 20)"	AluJb|SINE|Alu	12722	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	miscRNA
chr19.10587482.-	chr19	10587482	10587483	-	0	NA	Intergenic	AluSq2|SINE|Alu	-23849	NM_006202	5141	Hs.89901	NM_001111307	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	"phosphodiesterase 4A, cAMP-specific"	protein-coding
chr10.126431998.-	chr10	126431998	126431999	-	0	NA	"intron (NM_014661, intron 1 of 4)"	CpG	-932	NM_014661	9679	Hs.129195	NM_014661	ENSG00000189319	FAM53B	KIAA0140|RP11-12J10.2|bA12J10.2	"family with sequence similarity 53, member B"	protein-coding
chr11.1895887.+	chr11	1895887	1895888	+	0	NA	"intron (NM_001013254, intron 1 of 10)"	"intron (NM_001013254, intron 1 of 10)"	3733	NM_001013255	4046	Hs.56729	NM_001013253	ENSG00000130592	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
chr7.64199172.-	chr7	64199172	64199173	-	0	NA	Intergenic	SVA_D|Other|Other	55594	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr22.38008294.+	chr22	38008294	38008295	+	0	NA	"intron (NM_001172688, intron 1 of 17)"	AluY|SINE|Alu	3247	NM_001172688	26088	Hs.499158	NM_001001560	ENSG00000100083	GGA1	-	"golgi-associated, gamma adaptin ear containing, ARF binding protein 1"	protein-coding
chr1.65532952.+	chr1	65532952	65532953	+	0	NA	Intergenic	CpG	-8761	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1	microRNA 101-1	miscRNA
chr4.133021288.+	chr4	133021288	133021289	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1049182	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
chr5.1137786.+	chr5	1137786	1137787	+	0	NA	Intergenic	Intergenic	-25614	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr22.38573681.-	chr22	38573681	38573682	-	0	NA	"intron (NM_001199562, intron 1 of 15)"	AluSq2|SINE|Alu	-4080	NM_001004426	8398	Hs.170479	NM_001004426	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	"phospholipase A2, group VI (cytosolic, calcium-independent)"	protein-coding
chr14.102000750.+	chr14	102000750	102000751	+	0	NA	Intergenic	Intergenic	21263	NR_002770	64150	Hs.744281	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	miscRNA
chr3.51705369.-	chr3	51705369	51705370	-	0	NA	promoter-TSS (NM_001243725)	promoter-TSS (NM_001243725)	-79	NM_001243725	51368	Hs.517864	NM_001129884	ENSG00000164081	TEX264	SIG11|ZSIG11	testis expressed 264	protein-coding
chr19.7123225.-	chr19	7123225	7123226	-	0	NA	"intron (NM_000208, intron 17 of 21)"	AluSx1|SINE|Alu	-53754	NM_001044388	79230	Hs.591380	NM_001044387	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
chr6.34857478.-	chr6	34857478	34857479	-	0	NA	"intron (NM_015245, intron 1 of 23)"	CpG	-440	NM_015245	23294	Hs.656492	NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
chr17.41856046.-	chr17	41856046	41856047	-	0	NA	"intron (NM_004090, intron 1 of 2)"	CpG	-322	NM_004090	1845	Hs.181046	NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
chr10.8150564.+	chr10	8150564	8150565	+	0	NA	Intergenic	AluY|SINE|Alu	53897	NM_001002295	2625	Hs.524134	NM_001002295	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
chr2.61306983.+	chr2	61306983	61306984	+	0	NA	"intron (NM_001129993, intron 6 of 21)"	AluSx3|SINE|Alu	13620	NM_032506	84542	Hs.468653	NM_001129993	ENSG00000162929	KIAA1841	-	KIAA1841	protein-coding
chr22.24621459.+	chr22	24621459	24621460	+	0	NA	"intron (NM_001099781, intron 9 of 11)"	"intron (NM_001099781, intron 9 of 11)"	19651	NM_004121	2687	Hs.437156	NM_001099781	ENSG00000099998	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
chr14.44126154.-	chr14	44126154	44126155	-	0	NA	Intergenic	AluSc|SINE|Alu	-850345	NM_032135	84075	Hs.307086	NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
chr20.42218545.+	chr20	42218545	42218546	+	0	NA	Intergenic	AluJb|SINE|Alu	-1034	NM_016004	51098	Hs.444332	NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1	intraflagellar transport 52 homolog (Chlamydomonas)	protein-coding
chr11.5315853.-	chr11	5315853	5315854	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-7323	NM_033179	79339	Hs.679499	NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	"olfactory receptor, family 51, subfamily B, member 4"	protein-coding
chr1.46189887.+	chr1	46189887	46189888	+	0	NA	"intron (NM_005897, intron 5 of 8)"	SVA_E|Other|Other	26598	NM_001145349	3652	Hs.744252	NM_001145349	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
chr21.14392465.+	chr21	14392465	14392466	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18022	NR_026916	149992	Hs.579474	NR_026916		ANKRD30BP2	C21orf99|CT85|CTSP-1|CTSP1	ankyrin repeat domain 30B pseudogene 2	pseudo
chr17.57884670.+	chr17	57884670	57884671	+	0	NA	"intron (NM_030938, intron 7 of 11)"	AluY|SINE|Alu	-33957	NR_029493	406991	Hs.444569	NR_029493	ENSG00000199004	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	miscRNA
chr17.42602240.+	chr17	42602240	42602241	+	0	NA	Intergenic	SVA_D|Other|Other	-21283	NR_036474	23131	Hs.463129	NM_001002909		GPATCH8	GPATC8|KIAA0553	G patch domain containing 8	protein-coding
chr3.123003528.+	chr3	123003528	123003529	+	0	NA	"exon (NM_001199642, exon 21 of 21)"	"exon (NM_001199642, exon 21 of 21)"	82754	NM_012430	26984	Hs.477361	NM_012430		SEC22A	SEC22L2	SEC22 vesicle trafficking protein homolog A (S. cerevisiae)	protein-coding
chr1.92951046.+	chr1	92951046	92951047	+	0	NA	"intron (NM_005263, intron 1 of 6)"	CpG-1329	582	NM_001127216	2672	Hs.73172	NM_001127215	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcription repressor	protein-coding
chr17.45810652.+	chr17	45810652	45810653	+	0	NA	promoter-TSS (NM_013351)	promoter-TSS (NM_013351)	42	NM_013351	30009	Hs.272409	NM_013351	ENSG00000073861	TBX21	T-PET|T-bet|TBET|TBLYM	T-box 21	protein-coding
chr18.45548574.-	chr18	45548574	45548575	-	0	NA	Intergenic	Intergenic	91057	NM_001003652	4087	Hs.741342	NM_001003652	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
chr9.138902983.+	chr9	138902983	138902984	+	0	NA	"3' UTR (NM_144653, exon 6 of 6)"	"3' UTR (NM_144653, exon 6 of 6)"	-49757	NM_016172	10422	Hs.9194	NM_016172	ENSG00000130560	UBAC1	GBDR1|RP11-432J22.3|UBADC1	UBA domain containing 1	protein-coding
chr9.100617230.-	chr9	100617230	100617231	-	0	NA	"exon (NM_004473, exon 1 of 1)"	"exon (NM_004473, exon 1 of 1)"	-1693	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2	forkhead box E1 (thyroid transcription factor 2)	protein-coding
chr4.5892147.-	chr4	5892147	5892148	-	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	1832	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr2.210525393.-	chr2	210525393	210525394	-	0	NA	"intron (NM_031845, intron 4 of 11)"	AluY|SINE|Alu	-80990	NM_031845	4133	Hs.368281	NM_001039538	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
chr4.7764527.+	chr4	7764527	7764528	+	0	NA	"3' UTR (NM_001134647, exon 18 of 18)"	"3' UTR (NM_001134647, exon 18 of 18)"	8710	NR_026892	84740	Hs.663029	NM_032654		AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	miscRNA
chr16.75032895.+	chr16	75032895	75032896	+	0	NA	promoter-TSS (NM_032268)	promoter-TSS (NM_032268)	-20	NM_032268	84937	Hs.427284	NM_032268	ENSG00000186187	ZNRF1	NIN283	"zinc and ring finger 1, E3 ubiquitin protein ligase"	protein-coding
chr17.18755280.-	chr17	18755280	18755281	-	0	NA	Intergenic	AluSp|SINE|Alu	4332	NM_001243936	5636	Hs.632236	NM_001243936	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
chr16.4337512.+	chr16	4337512	4337513	+	0	NA	Intergenic	AluSq2|SINE|Alu	-14511	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4 (activating enhancer binding protein 4)	protein-coding
chr2.97535683.-	chr2	97535683	97535684	-	0	NA	promoter-TSS (NM_017789)	promoter-TSS (NM_017789)	-52	NM_017789	54910	Hs.516220	NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C"	protein-coding
chr7.5345670.-	chr7	5345670	5345671	-	0	NA	TTS (NM_001080495)	TTS (NM_001080495)	-23109	NM_153247	222962	Hs.4302	NM_001040661	ENSG00000164638	SLC29A4	ENT4|PMAT	"solute carrier family 29 (nucleoside transporters), member 4"	protein-coding
chr3.150480227.-	chr3	150480227	150480228	-	0	NA	"exon (NM_005067, exon 1 of 2)"	"exon (NM_005067, exon 1 of 2)"	-1036	NM_005067	6478	Hs.692394	NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
chr12.129892184.+	chr12	129892184	129892185	+	0	NA	"intron (NM_133448, intron 3 of 8)"	AluY|SINE|Alu	496028	NM_133448	121256	Hs.507268	NM_133448	ENSG00000151952	TMEM132D	MOLT	transmembrane protein 132D	protein-coding
chr1.6132049.-	chr1	6132049	6132050	-	0	NA	"intron (NM_001199862, intron 2 of 15)"	"intron (NM_001199862, intron 2 of 15)"	-25875	NM_001199863	8514	Hs.735032	NM_001199860	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	"potassium voltage-gated channel, shaker-related subfamily, beta member 2"	protein-coding
chr7.1474648.-	chr7	1474648	1474649	-	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	-24461	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr1.4712961.-	chr1	4712961	4712962	-	0	NA	Intergenic	Intergenic	2144	NM_001042478	55966	Hs.25924	NM_001042478	ENSG00000196581	AJAP1	MOT8|RP3-426F10.1|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
chr3.194978353.-	chr3	194978353	194978354	-	0	NA	"intron (NM_152531, intron 1 of 3)"	"intron (NM_152531, intron 1 of 3)"	-13542	NM_152531	152002	Hs.743284	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
chr6.125475738.-	chr6	125475738	125475739	-	0	NA	"intron (NM_001003395, intron 1 of 6)"	GC_rich|Low_complexity|Low_complexity	-318	NM_001003395	7164	Hs.591347	NM_001003395	ENSG00000111907	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
chr3.53225180.-	chr3	53225180	53225181	-	0	NA	"intron (NM_212539, intron 17 of 17)"	AluSx|SINE|Alu	-29957	NM_006254	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	MAY1|PKCD|nPKC-delta	"protein kinase C, delta"	protein-coding
chr19.41641929.+	chr19	41641929	41641930	+	0	NA	Intergenic	CpG	21576	NM_000774	1572	Hs.558318	NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F	"cytochrome P450, family 2, subfamily F, polypeptide 1"	protein-coding
chr5.128196980.-	chr5	128196980	128196981	-	0	NA	Intergenic	AluYk4|SINE|Alu	104230	NM_014031	28965	Hs.49765	NM_001017372	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	"solute carrier family 27 (fatty acid transporter), member 6"	protein-coding
chrX.122910329.+	chrX	122910329	122910330	+	0	NA	Intergenic	AluJo|SINE|Alu	-43425	NM_001081550	57187	Hs.149991	NM_001081550	ENSG00000125676	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
chr2.6835330.-	chr2	6835330	6835331	-	0	NA	Intergenic	AluSq|SINE|Alu	-75112	NR_038369	400941	Hs.446195	NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	miscRNA
chr15.24084625.-	chr15	24084625	24084626	-	0	NA	Intergenic	AluY|SINE|Alu	152175	NM_002487	4692	Hs.50130	NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	"necdin, melanoma antigen (MAGE) family member"	protein-coding
chr1.54839941.-	chr1	54839941	54839942	-	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	-32038	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr5.1887190.+	chr5	1887190	1887191	+	0	NA	Intergenic	CpG-20520	-4310	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
chr2.240371690.+	chr2	240371690	240371691	+	0	NA	Intergenic	SVA_D|Other|Other	-49047	NM_006037	9759	Hs.20516	NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA	histone deacetylase 4	protein-coding
chr17.8061021.+	chr17	8061021	8061022	+	0	NA	Intergenic	AluY|SINE|Alu	-5268	NM_002616	5187	Hs.445534	NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
chr11.86869688.-	chr11	86869688	86869689	-	0	NA	"intron (NM_022918, intron 5 of 14)"	AluY|SINE|Alu	-120802	NR_033149	65084	Hs.490745	NM_001168724		TMEM135	PMP52	transmembrane protein 135	protein-coding
chr9.136900806.+	chr9	136900806	136900807	+	0	NA	"intron (NM_007371, intron 10 of 11)"	"intron (NM_007371, intron 10 of 11)"	10245	NR_015427	266655	Hs.654869	NR_002800		LINC00094	LP2477|NCRNA00094|bA374P20.3	long intergenic non-protein coding RNA 94	miscRNA
chr15.93372476.-	chr15	93372476	93372477	-	0	NA	Intergenic	AluSg|SINE|Alu	-33762	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
chr1.54775789.+	chr1	54775789	54775790	+	0	NA	"intron (NM_145716, intron 4 of 17)"	"intron (NM_145716, intron 4 of 17)"	96190	NM_145716	23648	Hs.658676	NM_001009955	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
chr9.140674579.+	chr9	140674579	140674580	+	0	NA	"intron (NM_001145527, intron 14 of 15)"	HAL1-2a_MD|LINE|L1	17105	NR_024341	643210	Hs.721002	NM_001039765		FLJ40292	-	uncharacterized LOC643210	miscRNA
chr7.1474641.+	chr7	1474641	1474642	+	0	NA	"intron (NM_182924, intron 16 of 16)"	"intron (NM_182924, intron 16 of 16)"	24468	NM_182924	79778	Hs.663699	NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
chr8.104115248.-	chr8	104115248	104115249	-	0	NA	Intergenic	AluSp|SINE|Alu	37673	NM_024812	79870	Hs.533446	NM_001024372	ENSG00000164929	BAALC	-	"brain and acute leukemia, cytoplasmic"	protein-coding
chrX.39680348.+	chrX	39680348	39680349	+	0	NA	Intergenic	CpG	276371	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr19.49186342.+	chr19	49186342	49186343	+	0	NA	TTS (NR_004401)	TTS (NR_004401)	-10078	NM_145807	126147	Hs.326217	NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
chr19.47627937.+	chr19	47627937	47627938	+	0	NA	Intergenic	AluY|SINE|Alu	-6143	NM_005500	10055	Hs.515500	NM_001145713	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
chr10.120946129.-	chr10	120946129	120946130	-	0	NA	Intergenic	AluY|SINE|Alu	7784	NM_006793	10935	Hs.604267	NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
chr3.10858294.-	chr3	10858294	10858295	-	0	NA	"intron (NM_014229, intron 1 of 13)"	CpG	-377	NM_014229	6538	Hs.657405	NM_014229		SLC6A11	GAT-3|GAT3|GAT4	"solute carrier family 6 (neurotransmitter transporter, GABA), member 11"	protein-coding
chr8.56758299.-	chr8	56758299	56758300	-	0	NA	Intergenic	AluSx3|SINE|Alu	34087	NM_001111097	4067	Hs.545418	NM_001111097		LYN	JTK8|p53Lyn|p56Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	protein-coding
chr22.30781346.-	chr22	30781346	30781347	-	0	NA	"intron (NM_001017981, intron 4 of 8)"	AluY|SINE|Alu	-1956	NM_001017981	200312	Hs.592194	NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
chr18.66379606.+	chr18	66379606	66379607	+	0	NA	"intron (NM_019022, intron 2 of 15)"	MER76-int|LTR|ERVL	2747	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
chr7.64198975.+	chr7	64198975	64198976	+	0	NA	Intergenic	SVA_D|Other|Other	-55791	NM_001271639	7697	Hs.184080	NM_001160183		ZNF138	pHZ-32	zinc finger protein 138	protein-coding
chr17.3827958.-	chr17	3827958	3827959	-	0	NA	"3' UTR (NM_174957, exon 21 of 21)"	"3' UTR (NM_174957, exon 21 of 21)"	7998	NM_002558	5023	Hs.41735	NM_002558	ENSG00000108405	P2RX1	P2X1	"purinergic receptor P2X, ligand-gated ion channel, 1"	protein-coding
chr1.224419908.-	chr1	224419908	224419909	-	0	NA	"intron (NM_001243146, intron 19 of 20)"	AluY|SINE|Alu	-24935	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2	microRNA 320b-2	miscRNA
chr1.77747575.-	chr1	77747575	77747576	-	0	NA	promoter-TSS (NM_012093)	promoter-TSS (NM_012093)	87	NM_174858	26289	Hs.597002	NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
chr2.240187877.-	chr2	240187877	240187878	-	0	NA	"intron (NM_006037, intron 2 of 26)"	"intron (NM_006037, intron 2 of 26)"	39280	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	miscRNA
chr22.31732685.-	chr22	31732685	31732686	-	0	NA	"intron (NM_014323, intron 2 of 4)"	AluSx1|SINE|Alu	-9564	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
chr5.1137795.-	chr5	1137795	1137796	-	0	NA	Intergenic	Intergenic	25623	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr16.3733099.-	chr16	3733099	3733100	-	0	NA	"intron (NM_016292, intron 4 of 17)"	AluSp|SINE|Alu	-30159	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr5.133831531.-	chr5	133831531	133831532	-	0	NA	Intergenic	AluY|SINE|Alu	30267	NM_015288	23338	Hs.732155	NM_015288	ENSG00000043143	PHF15	JADE2	PHD finger protein 15	protein-coding
chr1.180198616.+	chr1	180198616	180198617	+	0	NA	promoter-TSS (NM_033343)	promoter-TSS (NM_033343)	-817	NM_033343	89884	Hs.658487	NM_033343		LHX4	CPHD4	LIM homeobox 4	protein-coding
chr2.157272344.+	chr2	157272344	157272345	+	0	NA	Intergenic	AluSp|SINE|Alu	-19621	NM_001083112	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
chrM.16326.+	chrM	16326	16327	+	0	NA	NA	Intergenic	NA	NA	4663				NA	NAC	neuroacanthocytosis	unknown
chr4.57633158.-	chr4	57633158	57633159	-	0	NA	Intergenic	AluSc8|SINE|Alu	-54481	NR_073417	6691	Hs.98243	NM_001271718	ENSG00000128040	SPINK2	HUSI-II	"serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)"	protein-coding
chr5.100110684.-	chr5	100110684	100110685	-	0	NA	Intergenic	LTR13|LTR|ERVK	-128286	NM_175052	7903	Hs.308628	NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4"	protein-coding
chr22.38336351.-	chr22	38336351	38336352	-	0	NA	"intron (NM_033386, intron 15 of 15)"	AluSc8|SINE|Alu	-13303	NM_032561	84645	Hs.517612	NM_001207062		C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
chr6.168219510.-	chr6	168219510	168219511	-	0	NA	Intergenic	AluSp|SINE|Alu	-7966	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	miscRNA
chr7.5125295.-	chr7	5125295	5125296	-	0	NA	Intergenic	Intergenic	-13604	NR_015343	389458	Hs.733005	NM_203393		LOC389458	-	uncharacterized LOC389458	miscRNA
chrX.77384602.+	chrX	77384602	77384603	+	0	NA	TTS (NM_015975)	TTS (NM_015975)	10577	NM_015975	51616	Hs.592248	NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	"TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa"	protein-coding
chr10.28821778.+	chr10	28821778	28821779	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	356	NR_024557	51322	Hs.743224	NM_016628		WAC	BM-016|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chr12.132969217.-	chr12	132969217	132969218	-	0	NA	Intergenic	Intergenic	63312	NM_001122636	50614	Hs.658249	NM_001122636	ENSG00000182870	GALNT9	GALNAC-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)	protein-coding
chr2.242530390.-	chr2	242530390	242530391	-	0	NA	"intron (NM_001164356, intron 4 of 4)"	"intron (NM_001164356, intron 4 of 4)"	-26526	NM_001164356	51078	Hs.435759	NM_001164356	ENSG00000176946	THAP4	PP238	THAP domain containing 4	protein-coding
chr7.5396338.-	chr7	5396338	5396339	-	0	NA	"intron (NM_001080495, intron 16 of 29)"	"intron (NM_001080495, intron 16 of 29)"	-66839	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr8.144512827.+	chr8	144512827	144512828	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	-225	NM_201589	389692	Hs.521914	NM_201589	ENSG00000182759	MAFA	RIPE3b1|hMafA	v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)	protein-coding
chr9.115819046.+	chr9	115819046	115819047	+	0	NA	promoter-TSS (NM_003408)	promoter-TSS (NM_003408)	-50	NM_003408	7539	Hs.150406	NM_003408	ENSG00000136866	ZFP37	ZNF906	ZFP37 zinc finger protein	protein-coding
chr17.27717869.+	chr17	27717869	27717870	+	0	NA	promoter-TSS (NM_020791)	promoter-TSS (NM_020791)	-74	NM_025142	57551	Hs.735869	NM_020791	ENSG00000160551	TAOK1	KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
chr7.5526750.+	chr7	5526750	5526751	+	0	NA	"intron (NM_024963, intron 4 of 4)"	"intron (NM_024963, intron 4 of 4)"	8798	NR_030318	693174		NR_030318		MIR589	MIRN589|hsa-mir-589	microRNA 589	miscRNA
chr3.112807947.-	chr3	112807947	112807948	-	0	NA	Intergenic	AluYc|SINE|Alu	69392	NR_027796	25871	Hs.591288	NR_027794	ENSG00000163608	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
chr17.8252946.-	chr17	8252946	8252947	-	0	NA	Intergenic	AluSq2|SINE|Alu	-9758	NM_153007	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
chr19.4345822.+	chr19	4345822	4345823	+	0	NA	"exon (NM_032868, exon 3 of 12)"	"exon (NM_032868, exon 3 of 12)"	2298	NM_032868	84954	Hs.321689	NM_001159846	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
chr12.9892357.-	chr12	9892357	9892358	-	0	NA	Intergenic	LTR12C|LTR|ERV1	6462	NM_001253750	160365	Hs.734740	NM_001253750	ENSG00000184293	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
chr19.38836220.-	chr19	38836220	38836221	-	0	NA	"intron (NM_021185, intron 6 of 28)"	AluSp|SINE|Alu	-9777	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
chr12.133115264.+	chr12	133115264	133115265	+	0	NA	"intron (NM_001142641, intron 4 of 16)"	"intron (NM_001142641, intron 4 of 16)"	48107	NM_001142641	57666	Hs.656668	XM_003403652	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
chr9.136951684.+	chr9	136951684	136951685	+	0	NA	Intergenic	AluY|SINE|Alu	-18543	NM_007371	8019	Hs.654869	NM_007371	ENSG00000169925	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
chr3.35680813.+	chr3	35680813	35680814	+	0	NA	"5' UTR (NM_001267616, exon 1 of 6)"	"5' UTR (NM_001267616, exon 1 of 6)"	147	NM_001267616	10777	Hs.475902	NM_001025068	ENSG00000172995	ARPP21	ARPP-21|R3HDM3|RCS|TARPP	"cAMP-regulated phosphoprotein, 21kDa"	protein-coding
chr17.40536626.-	chr17	40536626	40536627	-	0	NA	"intron (NM_139276, intron 1 of 23)"	AluJb|SINE|Alu	-3779	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
chr9.127626611.-	chr9	127626611	127626612	-	0	NA	Intergenic	AluSx|SINE|Alu	2371	NM_007209	11224	Hs.182825	NM_007209	ENSG00000136942	RPL35	L35	ribosomal protein L35	protein-coding
chr3.48117711.-	chr3	48117711	48117712	-	0	NA	"intron (NM_002375, intron 1 of 18)"	AluY|SINE|Alu	-13058	NM_030885	4134	Hs.517949	NM_001134364	ENSG00000047849	MAP4	-	microtubule-associated protein 4	protein-coding
chr10.43565993.-	chr10	43565993	43565994	-	0	NA	Intergenic	Intergenic	6524	NM_020630	5979	Hs.350321	NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding
chr19.2340058.+	chr19	2340058	2340059	+	0	NA	"intron (NM_152988, intron 6 of 14)"	CpG-12393	11429	NM_152988	56928	Hs.744026	NM_001077238		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
chr11.7603249.-	chr11	7603249	7603250	-	0	NA	"intron (NM_003621, intron 3 of 23)"	AluSx|SINE|Alu	15168	NM_001256568	8495	Hs.740974	NM_001256568	ENSG00000166387	PPFIBP2	Cclp1	"PTPRF interacting protein, binding protein 2 (liprin beta 2)"	protein-coding
chr9.137588852.-	chr9	137588852	137588853	-	0	NA	"intron (NM_000093, intron 2 of 65)"	AluY|SINE|Alu	-55200	NM_000093	1289	Hs.210283	NM_000093	ENSG00000130635	COL5A1	-	"collagen, type V, alpha 1"	protein-coding
chr21.22013089.-	chr21	22013089	22013090	-	0	NA	Intergenic	AluY|SINE|Alu	-162337	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	miscRNA
chr20.47588415.-	chr20	47588415	47588416	-	0	NA	"intron (NM_006420, intron 10 of 38)"	AluY|SINE|Alu	-50140	NM_006420	10564	Hs.62578	NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
chr13.114899238.+	chr13	114899238	114899239	+	0	NA	Intergenic	Intergenic	-1143	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
chr9.86733869.+	chr9	86733869	86733870	+	0	NA	Intergenic	AluSx|SINE|Alu	138232	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr20.62479308.-	chr20	62479308	62479309	-	0	NA	Intergenic	Intergenic	13258	NM_080622	140701	Hs.675171	NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
chr1.7739309.+	chr1	7739309	7739310	+	0	NA	"intron (NM_015215, intron 11 of 22)"	"intron (NM_015215, intron 11 of 22)"	-92020	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
chr1.38342280.-	chr1	38342280	38342281	-	0	NA	"intron (NM_005540, intron 16 of 23)"	AluY|SINE|Alu	16988	NM_005955	4520	Hs.471991	NM_005955		MTF1	MTF-1|ZRF	metal-regulatory transcription factor 1	protein-coding
chr19.18597359.-	chr19	18597359	18597360	-	0	NA	"intron (NM_006532, intron 1 of 11)"	"intron (NM_006532, intron 1 of 11)"	-35578	NM_006532	8178	Hs.515260	NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor RNA polymerase II	protein-coding
chr20.33062707.-	chr20	33062707	33062708	-	0	NA	"intron (NM_001257137, intron 17 of 25)"	SVA_D|Other|Other	-8577	NR_030374	693229		NR_030374		MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	miscRNA
chr8.78788189.-	chr8	78788189	78788190	-	0	NA	Intergenic	AluY|SINE|Alu	640147	NM_181839	5569	Hs.732129	NM_006823	ENSG00000171033	PKIA	PRKACN1	"protein kinase (cAMP-dependent, catalytic) inhibitor alpha"	protein-coding
chr17.74616079.+	chr17	74616079	74616080	+	0	NA	Intergenic	AluSx|SINE|Alu	23815	NM_018414	55808	Hs.105352	NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1"	protein-coding
chr2.208634822.-	chr2	208634822	208634823	-	0	NA	promoter-TSS (NM_003468)	promoter-TSS (NM_003468)	679	NM_003468	7855	Hs.17631	NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5	frizzled family receptor 5	protein-coding
chr1.203802282.-	chr1	203802282	203802283	-	0	NA	"intron (NM_014827, intron 11 of 19)"	AluSg|SINE|Alu	28458	NM_003094	6635	Hs.654418	NM_003094		SNRPE	B-raf|HYPT11|SME|Sm-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
chr17.71108203.-	chr17	71108203	71108204	-	0	NA	Intergenic	AluY|SINE|Alu	19350	NM_001159770	201266	Hs.221127	NM_001159770	ENSG00000133195	SLC39A11	C17orf26|ZIP11	"solute carrier family 39 (metal ion transporter), member 11"	protein-coding
chr1.117834388.+	chr1	117834388	117834389	+	0	NA	Intergenic	AluSx1|SINE|Alu	-75697	NM_006699	10905	Hs.435938	NM_006699		MAN1A2	MAN1B	"mannosidase, alpha, class 1A, member 2"	protein-coding
chr9.130734380.+	chr9	130734380	130734381	+	0	NA	"intron (NM_001035254, intron 1 of 10)"	"intron (NM_001035254, intron 1 of 10)"	8432	NM_001035254	399665	Hs.535972	NM_001035254	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	"family with sequence similarity 102, member A"	protein-coding
chr20.45935943.-	chr20	45935943	45935944	-	0	NA	"intron (NM_183047, intron 3 of 22)"	AluSq|SINE|Alu	11303	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	miscRNA
chr4.190662185.+	chr4	190662185	190662186	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-199789	NM_004477	2483	Hs.203772	NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
chr17.74917499.-	chr17	74917499	74917500	-	0	NA	"intron (NM_001199172, intron 8 of 16)"	"intron (NM_001199172, intron 8 of 16)"	-48770	NM_198955	146664	Hs.144531	NM_001199172	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	"mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B"	protein-coding
chr5.86116430.-	chr5	86116430	86116431	-	0	NA	Intergenic	AluSp|SINE|Alu	-200116	NR_037402	100500805		NR_037402		MIR3607	-	microRNA 3607	miscRNA
chr5.179581160.-	chr5	179581160	179581161	-	0	NA	"intron (NM_175062, intron 1 of 13)"	"intron (NM_175062, intron 1 of 13)"	-54970	NM_175062	255426	Hs.190559	NM_001031799	ENSG00000146090	RASGEF1C	-	"RasGEF domain family, member 1C"	protein-coding
chr14.102983871.+	chr14	102983871	102983872	+	0	NA	Intergenic	CpG	-7743	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr4.25871850.-	chr4	25871850	25871851	-	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	7240	NM_015187	23231	Hs.479384	NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding
chr21.45243655.+	chr21	45243655	45243656	+	0	NA	Intergenic	Intergenic	-11207	NR_026961	284837	Hs.592159	NR_026961	ENSG00000215458	LOC284837	-	uncharacterized LOC284837	miscRNA
chr3.58291987.+	chr3	58291987	58291988	+	0	NA	promoter-TSS (NR_049758)	promoter-TSS (NR_049758)	15	NR_049757	11102	Hs.700016	NM_001098783	ENSG00000163684	RPP14	P14	ribonuclease P/MRP 14kDa subunit	protein-coding
chr20.61021231.-	chr20	61021231	61021232	-	0	NA	Intergenic	Intergenic	18602	NM_080833	140893	Hs.180374	NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
chr4.123063363.-	chr4	123063363	123063364	-	0	NA	Intergenic	AluSg7|SINE|Alu	28395	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr1.43612774.+	chr1	43612774	43612775	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-820	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	"family with sequence similarity 183, member A"	protein-coding
chr9.34070263.+	chr9	34070263	34070264	+	0	NA	Intergenic	AluSz|SINE|Alu	-21316	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr10.6187528.+	chr10	6187528	6187529	+	0	NA	"intron (NM_001145443, intron 1 of 14)"	CpG	685	NM_001145443	5209	Hs.195471	NM_001145443	ENSG00000170525	PFKFB3	IPFK2|PFK2	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3"	protein-coding
chr10.7542202.-	chr10	7542202	7542203	-	0	NA	Intergenic	AluSc8|SINE|Alu	88754	NM_001029880	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
chr14.101679098.-	chr14	101679098	101679099	-	0	NA	Intergenic	AluSx1|SINE|Alu	-142850	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr10.21183603.-	chr10	21183603	21183604	-	0	NA	"intron (NM_006393, intron 2 of 27)"	AluY|SINE|Alu	-2928	NM_006393	10529	Hs.5025	NM_001173484	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding
chr2.119916038.+	chr2	119916038	119916039	+	0	NA	"5' UTR (NM_182528, exon 1 of 2)"	"5' UTR (NM_182528, exon 1 of 2)"	433	NM_182528	165257	Hs.433493	NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	"complement component 1, q subcomponent-like 2"	protein-coding
chr17.65843575.-	chr17	65843575	65843576	-	0	NA	"intron (NM_182641, intron 1 of 27)"	AluSx|SINE|Alu	-21795	NM_182641	2186	Hs.444200	NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
chr10.59351233.+	chr10	59351233	59351234	+	0	NA	Intergenic	AluY|SINE|Alu	-286914	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	miscRNA
chr8.91618526.-	chr8	91618526	91618527	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-39607	NM_001146273	169200	Hs.737401	NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
chr10.45240304.+	chr10	45240304	45240305	+	0	NA	Intergenic	AluSx1|SINE|Alu	-166460	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
chr6.88090567.-	chr6	88090567	88090568	-	0	NA	Intergenic	AluJb|SINE|Alu	16275	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr4.186162034.-	chr4	186162034	186162035	-	0	NA	"intron (NM_031953, intron 1 of 18)"	SVA_D|Other|Other	-30750	NM_031953	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	SBBI31	sorting nexin 25	protein-coding
chr3.139481324.-	chr3	139481324	139481325	-	0	NA	Intergenic	Intergenic	84439	NM_178177	349565	Hs.733090	NM_001200047	ENSG00000163864	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
chr17.4105659.+	chr17	4105659	4105660	+	0	NA	"intron (NR_047571, intron 6 of 23)"	AluSz6|SINE|Alu	58744	NM_001254755	124936	Hs.513871	NM_001254755	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
chr19.16781079.+	chr19	16781079	16781080	+	0	NA	"intron (NM_024074, intron 1 of 5)"	"intron (NM_024074, intron 1 of 5)"	9141	NM_024074	79041	Hs.436068	NM_024074		TMEM38A	TRIC-A|TRICA	transmembrane protein 38A	protein-coding
chr3.32863300.+	chr3	32863300	32863301	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3790	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr18.11959817.+	chr18	11959817	11959818	+	0	NA	Intergenic	SVA_D|Other|Other	-21610	NM_014214	3613	Hs.743311	NM_014214	ENSG00000141401	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
chr20.43342093.+	chr20	43342093	43342094	+	0	NA	Intergenic	AluSx|SINE|Alu	-1792	NM_003881	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
chr9.6858743.-	chr9	6858743	6858744	-	0	NA	"intron (NM_001146694, intron 5 of 20)"	AluSz6|SINE|Alu	-101102	NM_015061	23081	Hs.709425	NM_001146694	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
chr6.170055453.+	chr6	170055453	170055454	+	0	NA	"intron (NM_001202550, intron 10 of 21)"	"intron (NM_001202550, intron 10 of 21)"	46706	NM_182552	253769	Hs.131903	NM_001202550	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
chr11.67095697.+	chr11	67095697	67095698	+	0	NA	"intron (NR_024469, intron 2 of 3)"	MLT1B|LTR|ERVL-MaLR	10387	NR_024469	100130987	Hs.664585	NR_024469		LOC100130987	-	uncharacterized LOC100130987	miscRNA
chr18.38415900.-	chr18	38415900	38415901	-	0	NA	Intergenic	AluY|SINE|Alu	-684661	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	miscRNA
chr7.53103637.-	chr7	53103637	53103638	-	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	-288	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr15.30396194.+	chr15	30396194	30396195	+	0	NA	"non-coding (NR_026859, exon 1 of 5)"	"non-coding (NR_026859, exon 1 of 5)"	259	NR_026859	89837	Hs.510848	NR_026859	ENSG00000178081	ULK4P3	D-X|FAM7A3	unc-51-like kinase 4 (C. elegans) pseudogene 3	pseudo
chr9.4490556.+	chr9	4490556	4490557	+	0	NA	"5' UTR (NM_004170, exon 1 of 12)"	"5' UTR (NM_004170, exon 1 of 12)"	129	NM_004170	6505	Hs.444915	NM_004170	ENSG00000106688	SLC1A1	EAAC1|EAAT3	"solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1"	protein-coding
chrX.125833388.+	chrX	125833388	125833389	+	0	NA	Intergenic	AluSx3|SINE|Alu	-120359	NM_001122716	100130613	Hs.130370	NM_001122716	ENSG00000183631	CXorf64	-	chromosome X open reading frame 64	protein-coding
chr2.1817417.-	chr2	1817417	1817418	-	0	NA	"intron (NM_015025, intron 21 of 24)"	MER1B|DNA|hAT-Charlie	69126	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
chr7.99755416.+	chr7	99755416	99755417	+	0	NA	"intron (NM_018275, intron 2 of 10)"	"intron (NM_018275, intron 2 of 10)"	886	NM_018275	55262	Hs.533139	NM_018275	ENSG00000146826	C7orf43	-	chromosome 7 open reading frame 43	protein-coding
chr2.101924994.+	chr2	101924994	101924995	+	0	NA	promoter-TSS (NR_049881)	promoter-TSS (NR_049881)	184	NM_173647	284996	Hs.142074	NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
chr7.71239461.+	chr7	71239461	71239462	+	0	NA	Intergenic	AluSx1|SINE|Alu	-466705	NR_037477	100500836		NR_037477	ENSG00000265878	MIR3914-1	-	microRNA 3914-1	miscRNA
chr4.26862501.-	chr4	26862501	26862502	-	0	NA	"5' UTR (NM_001169117, exon 1 of 13)"	"5' UTR (NM_001169117, exon 1 of 13)"	-188	NM_020860	57620	Hs.135763	NM_001169117	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
chr16.1123315.-	chr16	1123315	1123316	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-559	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr8.98788125.-	chr8	98788125	98788126	-	0	NA	"exon (NM_018407, exon 1 of 7)"	"exon (NM_018407, exon 1 of 7)"	-316	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr1.39450159.+	chr1	39450159	39450160	+	0	NA	Intergenic	AluY|SINE|Alu	-6757	NM_024595	79647	Hs.293563	NM_001136275	ENSG00000174574	AKIRIN1	C1orf108|RP11-781D11.2|STRF2	akirin 1	protein-coding
chr16.55358000.-	chr16	55358000	55358001	-	0	NA	promoter-TSS (NM_024335)	promoter-TSS (NM_024335)	471	NM_024335	79190	Hs.369907	NM_024335		IRX6	IRX-3|IRX7|IRXB3	iroquois homeobox 6	protein-coding
chr15.55726757.-	chr15	55726757	55726758	-	0	NA	"intron (NR_037923, intron 7 of 15)"	BC200|scRNA|scRNA	-26034	NM_001198784	145788	Hs.97300	NM_001198784	ENSG00000261652	FLJ27352	-	uncharacterized LOC145788	protein-coding
chr14.78273464.-	chr14	78273464	78273465	-	0	NA	"intron (NM_001142545, intron 1 of 9)"	AluYa5|SINE|Alu	-7038	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr12.124905693.-	chr12	124905693	124905694	-	0	NA	"intron (NM_001206654, intron 14 of 47)"	"intron (NM_001206654, intron 14 of 47)"	-131983	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	FAM101A	-	"family with sequence similarity 101, member A"	protein-coding
chr7.100044634.-	chr7	100044634	100044635	-	0	NA	Intergenic	AluY|SINE|Alu	10540	NM_145030	221908	Hs.413359	NM_145030	ENSG00000160813	PPP1R35	C7orf47	"protein phosphatase 1, regulatory subunit 35"	protein-coding
chr3.66858311.-	chr3	66858311	66858312	-	0	NA	Intergenic	AluSc8|SINE|Alu	190416	NM_032505	84541	Hs.116665	NM_032505	ENSG00000163376	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
chr9.86597302.+	chr9	86597302	86597303	+	0	NA	"intron (NM_024945, intron 1 of 2)"	AluY|SINE|Alu	1665	NM_024945	80010	Hs.726327	NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75|RP11-346I8.1	"RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)"	protein-coding
chr12.49035836.+	chr12	49035836	49035837	+	0	NA	Intergenic	SVA_A|Other|Other	12465	NR_002968	677815	Hs.689717	NR_002968		SNORA34	ACA34	"small nucleolar RNA, H/ACA box 34"	snoRNA
chr2.20424061.+	chr2	20424061	20424062	+	0	NA	"intron (NM_001006946, intron 2 of 5)"	CpG	866	NM_002997	6382	Hs.224607	NM_001006946	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
chr10.135051181.+	chr10	135051181	135051182	+	0	NA	promoter-TSS (NM_014468)	promoter-TSS (NM_014468)	-227	NM_014468	27287	Hs.125231	NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
chr12.112426228.-	chr12	112426228	112426229	-	0	NA	"intron (NM_001193531, intron 4 of 10)"	AluSc|SINE|Alu	-24795	NM_138341	89894	Hs.506815	NM_001193453	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
chr7.6049070.+	chr7	6049070	6049071	+	0	NA	promoter-TSS (NR_003085)	promoter-TSS (NR_003085)	188	NM_006303	7965	Hs.520205	NM_006303	ENSG00000106305	AIMP2	JTV-1|JTV1|P38	aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	protein-coding
chr12.110044659.-	chr12	110044659	110044660	-	0	NA	Intergenic	Intergenic	-33159	NM_001114185	4598	Hs.130607	NM_000431	ENSG00000110921	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding
chr17.48350763.+	chr17	48350763	48350764	+	0	NA	"intron (NM_001168215, intron 1 of 5)"	CpG	-1025	NM_153229	162461	Hs.224630	NM_001168215	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
chr17.43255868.-	chr17	43255868	43255869	-	0	NA	Intergenic	AluY|SINE|Alu	-17604	NM_144608	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
chr3.26495165.-	chr3	26495165	26495166	-	0	NA	Intergenic	AluY|SINE|Alu	169135	NM_052953	116135	Hs.517868	NM_052953	ENSG00000179796	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
chr2.129902071.-	chr2	129902071	129902072	-	0	NA	Intergenic	LTR12D|LTR|ERV1	-789819	NR_026740	389033	Hs.380682	NR_026740	ENSG00000214100	LOC389033	-	placenta-specific 9 pseudogene	pseudo
chr14.23517071.-	chr14	23517071	23517072	-	0	NA	"3' UTR (NM_022478, exon 13 of 14)"	"3' UTR (NM_022478, exon 13 of 14)"	-5695	NM_001099780	122706	Hs.508918	NM_001099780	ENSG00000222028	PSMB11	BETA5T	"proteasome (prosome, macropain) subunit, beta type, 11"	protein-coding
chr16.1123294.-	chr16	1123294	1123295	-	0	NA	"intron (NM_001172560, intron 1 of 1)"	"intron (NM_001172560, intron 1 of 1)"	-538	NM_001172560	6755	Hs.449840	NM_001053	ENSG00000162009	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
chr6.121079723.-	chr6	121079723	121079724	-	0	NA	Intergenic	AluY|SINE|Alu	-575921	NM_152730	221322	Hs.121396	NM_152730	ENSG00000146350	C6orf170	BROMI|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	chromosome 6 open reading frame 170	protein-coding
chrX.48703066.-	chrX	48703066	48703067	-	0	NA	Intergenic	AluSx|SINE|Alu	9030	NM_013271	27344	Hs.522640	NM_013271	ENSG00000102109	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
chr2.43254199.-	chr2	43254199	43254200	-	0	NA	Intergenic	Intergenic	-199546	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
chr10.104238456.-	chr10	104238456	104238457	-	0	NA	TTS (NM_005736)	TTS (NM_005736)	-17286	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
chr10.86331064.-	chr10	86331064	86331065	-	0	NA	Intergenic	LTR12C|LTR|ERV1	-242654	NM_018999	54462	Hs.461988	NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
chr1.24513603.+	chr1	24513603	24513604	+	0	NA	"intron (NM_170743, intron 1 of 6)"	CpG	162	NM_170743	163702	Hs.221375	NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	"interferon, lambda receptor 1"	protein-coding
chr7.31092132.+	chr7	31092132	31092133	+	0	NA	promoter-TSS (NM_001199637)	promoter-TSS (NM_001199637)	56	NM_001199636	117	Hs.377783	NM_001118	ENSG00000078549	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	adenylate cyclase activating polypeptide 1 (pituitary) receptor type I	protein-coding
chr8.22594704.-	chr8	22594704	22594705	-	0	NA	"intron (NM_144962, intron 4 of 6)"	AluSx1|SINE|Alu	43889	NM_004430	1960	Hs.534313	NM_001199880	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
chr12.108297632.+	chr12	108297632	108297633	+	0	NA	promoter-TSS (NR_037629)	promoter-TSS (NR_037629)	-84	NR_037629	728739	Hs.741995	NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
chr5.1137746.-	chr5	1137746	1137747	-	0	NA	Intergenic	Intergenic	25574	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	"solute carrier family 12 (potassium/chloride transporters), member 7"	protein-coding
chr1.161393119.+	chr1	161393119	161393120	+	0	NA	Intergenic	SVA_D|Other|Other	-55446	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	C1orf192	-	chromosome 1 open reading frame 192	protein-coding
chr1.2587419.-	chr1	2587419	2587420	-	0	NA	"intron (NM_001242672, intron 4 of 6)"	"intron (NM_001242672, intron 4 of 6)"	22938	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
chr19.13188982.-	chr19	13188982	13188983	-	0	NA	"intron (NM_001271043, intron 6 of 10)"	"intron (NM_001271043, intron 6 of 10)"	-24992	NM_005583	4066	Hs.728534	NM_005583	ENSG00000104903	LYL1	bHLHa18	lymphoblastic leukemia derived sequence 1	protein-coding
chr8.142281267.-	chr8	142281267	142281268	-	0	NA	Intergenic	Intergenic	42594	NM_001080431	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	"solute carrier family 45, member 4"	protein-coding
chr17.18178972.+	chr17	18178972	18178973	+	0	NA	"intron (NM_004618, intron 18 of 18)"	AluY|SINE|Alu	14548	NM_148886	125170	Hs.655555	NM_001144900	ENSG00000177427	SMCR7	MID49	"Smith-Magenis syndrome chromosome region, candidate 7"	protein-coding
chr14.78273470.-	chr14	78273470	78273471	-	0	NA	"intron (NM_001142545, intron 1 of 9)"	AluYa5|SINE|Alu	-7044	NM_020421	57143	Hs.413208	NM_001142545	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
chr17.41764806.+	chr17	41764806	41764807	+	0	NA	Intergenic	Intergenic	-25544	NM_001040002	4222	Hs.438	NM_001040002	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
chr2.190686806.-	chr2	190686806	190686807	-	0	NA	"intron (NM_001128143, intron 5 of 11)"	CpG	37709	NM_001128150	94101	Hs.700632	NM_001128150	ENSG00000128699	ORMDL1	-	ORM1-like 1 (S. cerevisiae)	protein-coding
chr16.70148590.+	chr16	70148590	70148591	+	0	NA	"intron (NM_017990, intron 1 of 18)"	CpG	1061	NM_017990	55066	Hs.744043	NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
chr2.32250720.-	chr2	32250720	32250721	-	0	NA	"intron (NM_032574, intron 4 of 4)"	AluSx3|SINE|Alu	-14124	NM_032574	84661	Hs.531788	NM_032574		DPY30	HDPY-30|Saf19	dpy-30 homolog (C. elegans)	protein-coding
chr2.16600685.+	chr2	16600685	16600686	+	0	NA	Intergenic	AluY|SINE|Alu	246449	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	"family with sequence similarity 49, member A"	protein-coding
chr16.3755353.+	chr16	3755353	3755354	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12245	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr7.127630.+	chr7	127630	127631	+	0	NA	Intergenic	Intergenic	-65339	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	"family with sequence similarity 20, member C"	protein-coding
chr22.49578200.+	chr22	49578200	49578201	+	0	NA	Intergenic	Intergenic	315618	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr8.98771872.+	chr8	98771872	98771873	+	0	NA	Intergenic	AluSq10|SINE|Alu	-15937	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
chr2.92172348.-	chr2	92172348	92172349	-	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-43189	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2	pseudo
chr14.102954962.-	chr14	102954962	102954963	-	0	NA	"intron (NM_014844, intron 17 of 19)"	AluSp|SINE|Alu	-21166	NM_152326	122416	Hs.432945	NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
chr7.73820267.-	chr7	73820267	73820268	-	0	NA	TTS (NM_003388)	TTS (NM_003388)	47853	NM_016328	9569	Hs.647056	NM_001199207	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
chr1.238519095.-	chr1	238519095	238519096	-	0	NA	Intergenic	AluSg|SINE|Alu	-130222	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LOC339535	-	uncharacterized LOC339535	miscRNA
chr2.1563020.+	chr2	1563020	1563021	+	0	NA	Intergenic	Intergenic	144840	NM_175721	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
chr6.79438721.-	chr6	79438721	79438722	-	0	NA	Intergenic	AluY|SINE|Alu	138540	NM_001010844	134728	Hs.656212	NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
chrX.86721008.-	chrX	86721008	86721009	-	0	NA	Intergenic	SVA_C|Other|Other	51707	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chr5.1476614.-	chr5	1476614	1476615	-	0	NA	"intron (NM_024830, intron 9 of 13)"	"intron (NM_024830, intron 9 of 13)"	31071	NM_001044	6531	Hs.406	NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS	"solute carrier family 6 (neurotransmitter transporter, dopamine), member 3"	protein-coding
chr4.1765449.+	chr4	1765449	1765450	+	0	NA	Intergenic	CpG	-29590	NM_000142	2261	Hs.1420	NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
chr11.67346416.-	chr11	67346416	67346417	-	0	NA	Intergenic	AluY|SINE|Alu	4650	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|PI	glutathione S-transferase pi 1	protein-coding
chr3.189144191.+	chr3	189144191	189144192	+	0	NA	Intergenic	AluSx|SINE|Alu	-185808	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	miscRNA
chr14.45366746.-	chr14	45366746	45366747	-	0	NA	"5' UTR (NM_001017923, exon 1 of 5)"	"5' UTR (NM_001017923, exon 1 of 5)"	-239	NM_001017923	122525	Hs.82098	NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
chr3.32863285.+	chr3	32863285	32863286	+	0	NA	"intron (NM_001039111, intron 1 of 3)"	CpG	3775	NM_001039111	131405	Hs.567678	NM_001039111	ENSG00000206557	TRIM71	LIN-41|LIN41	"tripartite motif containing 71, E3 ubiquitin protein ligase"	protein-coding
chr2.58077699.+	chr2	58077699	58077700	+	0	NA	Intergenic	Intergenic	-196078	NR_049781	7444	Hs.744058	NM_001130480	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
chr15.41613491.-	chr15	41613491	41613492	-	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	-11328	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr1.54966356.-	chr1	54966356	54966357	-	0	NA	Intergenic	AluSq|SINE|Alu	47451	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chrX.63045996.+	chrX	63045996	63045997	+	0	NA	Intergenic	SVA_B|Other|Other	-40029	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468	microRNA 1468	miscRNA
chr3.102974064.-	chr3	102974064	102974065	-	0	NA	Intergenic	SVA_D|Other|Other	-820205	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr16.723841.-	chr16	723841	723842	-	0	NA	"3' UTR (NM_138769, exon 19 of 19)"	"3' UTR (NM_138769, exon 19 of 19)"	2234	NM_003961	9028	Hs.137572	NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	"rhomboid, veinlet-like 1 (Drosophila)"	protein-coding
chr22.29602077.+	chr22	29602077	29602078	+	0	NA	"exon (NM_133455, exon 1 of 15)"	"exon (NM_133455, exon 1 of 15)"	176	NM_133455	129080	Hs.289106	NM_001267895	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
chr6.142298828.+	chr6	142298828	142298829	+	0	NA	Intergenic	AluY|SINE|Alu	111108	NM_002511	4829	Hs.654478	NM_002511	ENSG00000135577	NMBR	-	neuromedin B receptor	protein-coding
chr13.111268296.-	chr13	111268296	111268297	-	0	NA	"intron (NM_001242881, intron 1 of 9)"	CpG	-365	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr9.138065697.+	chr9	138065697	138065698	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7758	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	miscRNA
chr13.111268092.-	chr13	111268092	111268093	-	0	NA	"exon (NM_018210, exon 1 of 10)"	"exon (NM_018210, exon 1 of 10)"	-161	NM_018210	55739	Hs.408324	NM_001242881	ENSG00000213995	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
chr19.8422735.+	chr19	8422735	8422736	+	0	NA	Intergenic	AluY|SINE|Alu	-6276	NM_139314	51129	Hs.9613	NM_001039667	ENSG00000167772	ANGPTL4	ANGPTL2|ARP4|FIAF|HFARP|NL2|PGAR|pp1158	angiopoietin-like 4	protein-coding
chr2.85499737.-	chr2	85499737	85499738	-	0	NA	"intron (NM_031283, intron 3 of 11)"	AluJr|SINE|Alu	-55682	NM_001206840	10618	Hs.593382	NM_001206840	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
chr20.47088269.+	chr20	47088269	47088270	+	0	NA	Intergenic	Intergenic	99615	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr21.45205954.-	chr21	45205954	45205955	-	0	NA	Intergenic	AluYc|SINE|Alu	3464	NM_003683	8568	Hs.110757	NM_003683		RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding
chr12.94947006.-	chr12	94947006	94947007	-	0	NA	Intergenic	AluSx|SINE|Alu	8559	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	miscRNA
chr12.106533417.-	chr12	106533417	106533418	-	0	NA	"5' UTR (NM_014840, exon 1 of 7)"	"5' UTR (NM_014840, exon 1 of 7)"	-394	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	"NUAK family, SNF1-like kinase, 1"	protein-coding
chr14.52633549.+	chr14	52633549	52633550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-97603	NM_007361	22795	Hs.369840	NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
chr3.37886006.+	chr3	37886006	37886007	+	0	NA	Intergenic	AluY|SINE|Alu	-17663	NM_001008392	10217	Hs.475963	NM_001008392	ENSG00000144677	CTDSPL	C3orf8|HYA22|PSR1|RBSP3|SCP3	"CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like"	protein-coding
chr6.160426439.+	chr6	160426439	160426440	+	0	NA	"non-coding (NR_047514, exon 1 of 1)"	"non-coding (NR_047514, exon 1 of 1)"	2257	NR_047514	100271873	Hs.742166	NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	miscRNA
chr13.56400608.-	chr13	56400608	56400609	-	0	NA	Intergenic	AluY|SINE|Alu	-652019	NR_049804	100846996		NR_049804	ENSG00000264387	MIR5007	-	microRNA 5007	miscRNA
chr15.41613129.+	chr15	41613129	41613130	+	0	NA	"intron (NM_007280, intron 2 of 4)"	SVA_D|Other|Other	11690	NM_007280	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
chr20.47088234.-	chr20	47088234	47088235	-	0	NA	Intergenic	Intergenic	-99580	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	miscRNA
chr1.85155947.-	chr1	85155947	85155948	-	0	NA	"5' UTR (NM_001166417, exon 1 of 15)"	"5' UTR (NM_001166417, exon 1 of 15)"	-204	NM_001166417	117178	Hs.22587	NM_001166293	ENSG00000117155	SSX2IP	ADIP	"synovial sarcoma, X breakpoint 2 interacting protein"	protein-coding
chr18.63211151.-	chr18	63211151	63211152	-	0	NA	Intergenic	AluY|SINE|Alu	206337	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr7.53103649.-	chr7	53103649	53103650	-	0	NA	"exon (NM_182595, exon 1 of 1)"	"exon (NM_182595, exon 1 of 1)"	-300	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
chr5.31018926.-	chr5	31018926	31018927	-	0	NA	Intergenic	AluY|SINE|Alu	174836	NM_004932	1004	Hs.171054	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	"cadherin 6, type 2, K-cadherin (fetal kidney)"	protein-coding
chr21.31598700.+	chr21	31598700	31598701	+	0	NA	Intergenic	AluSx4|SINE|Alu	-10231	NM_199328	9073	Hs.162209	NM_199328	ENSG00000156284	CLDN8	-	claudin 8	protein-coding
chr19.4866163.-	chr19	4866163	4866164	-	0	NA	"intron (NM_005817, intron 1 of 7)"	AluSx1|SINE|Alu	-1617	NM_001164194	10226	Hs.140452	NM_001164189	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
chr18.10581554.+	chr18	10581554	10581555	+	0	NA	Intergenic	AluSq2|SINE|Alu	55681	NM_003826	8774	Hs.464622	NM_003826	ENSG00000134265	NAPG	GAMMASNAP	"N-ethylmaleimide-sensitive factor attachment protein, gamma"	protein-coding
chr4.138974449.-	chr4	138974449	138974450	-	0	NA	"intron (NR_037866, intron 7 of 10)"	LTR12C|LTR|ERV1	35719	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	miscRNA
chr17.40464880.+	chr17	40464880	40464881	+	0	NA	TTS (NM_213662)	TTS (NM_213662)	25315	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
chr11.18743351.-	chr11	18743351	18743352	-	0	NA	"intron (NM_173588, intron 3 of 22)"	CpG-3947	-4426	NM_173588	283284	Hs.434152	NM_173588	ENSG00000179057	IGSF22	-	"immunoglobulin superfamily, member 22"	protein-coding
chr3.195370275.+	chr3	195370275	195370276	+	0	NA	Intergenic	L2a|LINE|L2	-14635	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	"succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2"	pseudo
chr1.28482558.-	chr1	28482558	28482559	-	0	NA	"intron (NM_001164722, intron 1 of 1)"	AluSq2|SINE|Alu	-20897	NM_000952	5724	Hs.77542	NM_000952	ENSG00000169403	PTAFR	PAFR	platelet-activating factor receptor	protein-coding
chr1.94375261.+	chr1	94375261	94375262	+	0	NA	promoter-TSS (NM_002061)	promoter-TSS (NM_002061)	-249	NM_002061	2730	Hs.315562	NM_002061		GCLM	GLCLR	"glutamate-cysteine ligase, modifier subunit"	protein-coding
chr6.158438957.-	chr6	158438957	158438958	-	0	NA	"intron (NM_001178088, intron 1 of 25)"	"intron (NM_001178088, intron 1 of 25)"	-877	NM_001178088	8871	Hs.434494	NM_001178088	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
chr2.10205123.+	chr2	10205123	10205124	+	0	NA	"intron (NM_001037160, intron 2 of 2)"	AluSz|SINE|Alu	15415	NM_001037160	192668	Hs.720471	NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
chr3.196619074.-	chr3	196619074	196619075	-	0	NA	"intron (NM_152699, intron 2 of 9)"	AluSx3|SINE|Alu	-24347	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
chr22.38696771.+	chr22	38696771	38696772	+	0	NA	"exon (NM_001894, exon 5 of 11)"	"exon (NM_001894, exon 5 of 11)"	16642	NM_152221	1454	Hs.474833	NM_001894	ENSG00000213923	CSNK1E	CKIepsilon|HCKIE	"casein kinase 1, epsilon"	protein-coding
chr6.710898.+	chr6	710898	710899	+	0	NA	Intergenic	CpG	-17757	NM_018303	55770	Hs.484412	NM_018303	ENSG00000112685	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
chr5.141558666.-	chr5	141558666	141558667	-	0	NA	Intergenic	AluSg|SINE|Alu	-70342	NM_030571	80762	Hs.653510	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
chr11.113666024.+	chr11	113666024	113666025	+	0	NA	Intergenic	AluSx|SINE|Alu	15506	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
chr16.30960008.+	chr16	30960008	30960009	+	0	NA	promoter-TSS (NM_152288)	promoter-TSS (NM_152288)	-397	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr14.93129942.-	chr14	93129942	93129943	-	0	NA	"intron (NM_024832, intron 7 of 9)"	"intron (NM_024832, intron 7 of 9)"	-85105	NM_001008530	5641	Hs.18069	NM_001008530	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
chr7.5396280.+	chr7	5396280	5396281	+	0	NA	"intron (NM_001080495, intron 16 of 29)"	CpG	66897	NM_001080495	84629	Hs.520638	NM_001080495	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
chr1.31586340.-	chr1	31586340	31586341	-	0	NA	Intergenic	AluY|SINE|Alu	47776	NM_014676	9698	Hs.281707	NM_001020658	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio homolog 1 (Drosophila)	protein-coding
chr15.41674329.+	chr15	41674329	41674330	+	0	NA	Intergenic	SVA_F|Other|Other	20329	NR_045620	51103	Hs.106529	NM_016013	ENSG00000137806	NDUFAF1	CGI65|CIA30	"NADH dehydrogenase (ubiquinone) complex I, assembly factor 1"	protein-coding
chr1.17034268.+	chr1	17034268	17034269	+	0	NA	"intron (NR_026567, intron 2 of 10)"	CpG-520	12384	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	RP1-163M9.1|dJ1182A14.1	espin pseudogene	pseudo
chr17.1625145.+	chr17	1625145	1625146	+	0	NA	"intron (NM_001163673, intron 1 of 9)"	AluSp|SINE|Alu	-2689	NM_001163811	124997	Hs.234572	NM_001163673	ENSG00000167716	WDR81	CAMRQ2	WD repeat domain 81	protein-coding
chr15.75494169.+	chr15	75494169	75494170	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-52	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
chr5.17924786.+	chr5	17924786	17924787	+	0	NA	Intergenic	AluY|SINE|Alu	-537367	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	miscRNA
chr19.17836825.+	chr19	17836825	17836826	+	0	NA	"exon (NM_018174, exon 5 of 7)"	"exon (NM_018174, exon 5 of 7)"	6522	NM_018174	55201	Hs.66048	NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
chrX.133976886.-	chrX	133976886	133976887	-	0	NA	"intron (NM_138819, intron 3 of 6)"	AluSq2|SINE|Alu	-35663	NM_138819	159091	Hs.269127	NM_001170779	ENSG00000156500	FAM122C	-	family with sequence similarity 122C	protein-coding
chr20.32757619.-	chr20	32757619	32757620	-	0	NA	Intergenic	AluSc8|SINE|Alu	57534	NM_003908	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	"eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa"	protein-coding
chr20.60624004.+	chr20	60624004	60624005	+	0	NA	"intron (NM_003185, intron 1 of 14)"	"intron (NM_003185, intron 1 of 14)"	16862	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	"TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa"	protein-coding
chr8.143019529.+	chr8	143019529	143019530	+	0	NA	Intergenic	Intergenic	-238171	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	miscRNA
chr14.105736147.-	chr14	105736147	105736148	-	0	NA	"intron (NM_001242787, intron 3 of 17)"	"intron (NM_001242787, intron 3 of 17)"	20406	NM_001242789	2972	Hs.424484	NM_001242786	ENSG00000185024	BRF1	BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	"BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)"	protein-coding
chr10.103565475.-	chr10	103565475	103565476	-	0	NA	"intron (NM_012215, intron 6 of 15)"	AluY|SINE|Alu	-12747	NM_001142434	10724	Hs.500842	NM_001142434	ENSG00000198408	MGEA5	MEA5|NCOAT|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding
chr8.41166045.+	chr8	41166045	41166046	+	0	NA	"intron (NM_003012, intron 1 of 2)"	CpG	945	NM_003012	6422	Hs.213424	NM_003012	ENSG00000104332	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
chr2.128145100.+	chr2	128145100	128145101	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-30896	NM_000312	5624	Hs.224698	NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C (inactivator of coagulation factors Va and VIIIa)	protein-coding
chr2.163473823.+	chr2	163473823	163473824	+	0	NA	"intron (NM_033272, intron 2 of 15)"	AluY|SINE|Alu	221434	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	"potassium voltage-gated channel, subfamily H (eag-related), member 7"	protein-coding
chr7.25057674.-	chr7	25057674	25057675	-	0	NA	Intergenic	SVA_F|Other|Other	37914	NM_145321	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chr2.232479074.+	chr2	232479074	232479075	+	0	NA	Intergenic	CpG	21499	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	C2orf57	-	chromosome 2 open reading frame 57	protein-coding
chr3.28951351.+	chr3	28951351	28951352	+	0	NA	Intergenic	AluY|SINE|Alu	334582	NR_038840	645206	Hs.644308	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	miscRNA
chr12.12518265.+	chr12	12518265	12518266	+	0	NA	"intron (NM_058169, intron 2 of 3)"	AluJb|SINE|Alu	8245	NM_058169	118426	Hs.720779	NM_058169	ENSG00000165714	LOH12CR1	LOH1CR12	"loss of heterozygosity, 12, chromosomal region 1"	protein-coding
chrX.31449046.-	chrX	31449046	31449047	-	0	NA	"intron (NM_000109, intron 60 of 78)"	AluY|SINE|Alu	-77369	NM_004014	1756	Hs.495912	NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272	dystrophin	protein-coding
chr4.118425599.+	chr4	118425599	118425600	+	0	NA	Intergenic	AluY|SINE|Alu	-418863	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
chr11.114967336.+	chr11	114967336	114967337	+	0	NA	Intergenic	AluSz|SINE|Alu	407905	NM_014333	23705	Hs.370510	NM_001098517	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
chr3.82554738.-	chr3	82554738	82554739	-	0	NA	Intergenic	MER52A|LTR|ERV1	743788	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	"glucan (1,4-alpha-), branching enzyme 1"	protein-coding
chr17.81050025.-	chr17	81050025	81050026	-	0	NA	"intron (NM_001004431, intron 2 of 3)"	"intron (NM_001004431, intron 2 of 3)"	-12458	NM_001004431	284207	Hs.378821	NM_001004431	ENSG00000176845	METRNL	-	"meteorin, glial cell differentiation regulator-like"	protein-coding
chr14.101693734.+	chr14	101693734	101693735	+	0	NA	Intergenic	Intergenic	157486	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	miscRNA
chr20.3079649.+	chr20	3079649	3079650	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7908	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	miscRNA
chr5.37295972.-	chr5	37295972	37295973	-	0	NA	"intron (NM_004298, intron 32 of 34)"	SVA_D|Other|Other	46442	NM_023073	65250	Hs.586199	NM_023073	ENSG00000197603	C5orf42	JBTS17	chromosome 5 open reading frame 42	protein-coding
chr7.82072974.-	chr7	82072974	82072975	-	0	NA	promoter-TSS (NM_000722)	promoter-TSS (NM_000722)	-57	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A	"calcium channel, voltage-dependent, alpha 2/delta subunit 1"	protein-coding
chr18.63211134.+	chr18	63211134	63211135	+	0	NA	Intergenic	AluY|SINE|Alu	-206354	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr1.16174075.-	chr1	16174075	16174076	-	0	NA	promoter-TSS (NM_015001)	promoter-TSS (NM_015001)	284	NM_015001	23013	Hs.558463	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	"spen homolog, transcriptional regulator (Drosophila)"	protein-coding
chr8.56889626.+	chr8	56889626	56889627	+	0	NA	"intron (NM_002350, intron 10 of 12)"	AluSq|SINE|Alu	96834	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	"small nucleolar RNA, C/D box 54"	snoRNA
chr22.50871781.-	chr22	50871781	50871782	-	0	NA	"intron (NM_001242898, intron 12 of 23)"	"intron (NM_001242898, intron 12 of 23)"	-41683	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr9.34070280.-	chr9	34070280	34070281	-	0	NA	Intergenic	AluSz|SINE|Alu	21333	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2|bA176F3.5	ubiquitin associated protein 2	protein-coding
chr13.95987724.-	chr13	95987724	95987725	-	0	NA	Intergenic	AluSq2|SINE|Alu	34037	NM_005845	10257	Hs.508423	NM_001105515	ENSG00000125257	ABCC4	EST170205|MOAT-B|MOATB|MRP4	"ATP-binding cassette, sub-family C (CFTR/MRP), member 4"	protein-coding
chr19.47523076.+	chr19	47523076	47523077	+	0	NA	Intergenic	CpG	-1067	NM_002517	4861	Hs.79564	NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
chr21.45193228.-	chr21	45193228	45193229	-	0	NA	TTS (NM_000100)	TTS (NM_000100)	-3028	NM_000100	1476	Hs.695	NM_000100		CSTB	CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B (stefin B)	protein-coding
chr21.32916807.-	chr21	32916807	32916808	-	0	NA	"intron (NM_003253, intron 1 of 28)"	AluSx1|SINE|Alu	-14483	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
chr8.8559291.+	chr8	8559291	8559292	+	0	NA	promoter-TSS (NM_194284)	promoter-TSS (NM_194284)	-375	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
chr6.119182197.+	chr6	119182197	119182198	+	0	NA	"intron (NM_017696, intron 6 of 11)"	MER52A|LTR|ERV1	-33044	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	protein-coding
chr3.102974037.+	chr3	102974037	102974038	+	0	NA	Intergenic	SVA_D|Other|Other	820178	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
chr21.45708569.-	chr21	45708569	45708570	-	0	NA	"intron (NM_000383, intron 5 of 13)"	"intron (NM_000383, intron 5 of 13)"	-2848	NM_000383	326	Hs.129829	NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
chr17.40576529.-	chr17	40576529	40576530	-	0	NA	Intergenic	AluSx|SINE|Alu	1191	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
chr10.88698858.+	chr10	88698858	88698859	+	0	NA	"intron (NM_024756, intron 6 of 6)"	AluSp|SINE|Alu	18567	NM_024756	79812	Hs.524479	NM_024756	ENSG00000173269	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
chr22.49593778.-	chr22	49593778	49593779	-	0	NA	Intergenic	Intergenic	-331196	NR_038944	100128946	Hs.535676	NR_038944		LOC100128946	-	uncharacterized LOC100128946	miscRNA
chr16.75369603.+	chr16	75369603	75369604	+	0	NA	"intron (NM_006324, intron 5 of 6)"	AluY|SINE|Alu	-67652	NM_001170715	9564	Hs.479747	NM_001170714	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
chr8.129430387.+	chr8	129430387	129430388	+	0	NA	Intergenic	AluSx3|SINE|Alu	268025	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	miscRNA
chr9.34329776.+	chr9	34329776	34329777	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	272	NM_147173	318	Hs.731743	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding
chr17.3109963.-	chr17	3109963	3109964	-	0	NA	Intergenic	AluSc8|SINE|Alu	8952	NM_014565	8383	Hs.532688	NM_014565	ENSG00000172146	OR1A1	OR17-7	"olfactory receptor, family 1, subfamily A, member 1"	protein-coding
chr8.74005310.+	chr8	74005310	74005311	+	0	NA	"5' UTR (NM_153225, exon 1 of 5)"	"5' UTR (NM_153225, exon 1 of 5)"	197	NM_153225	157869	Hs.439040	NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	"somatomedin B and thrombospondin, type 1 domain containing"	protein-coding
chr4.5892151.+	chr4	5892151	5892152	+	0	NA	"intron (NM_001014809, intron 1 of 13)"	CpG	-1836	NM_001313	1400	Hs.135270	NM_001014809	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
chr1.233749879.+	chr1	233749879	233749880	+	0	NA	"5' UTR (NM_002245, exon 1 of 3)"	"5' UTR (NM_002245, exon 1 of 3)"	129	NM_002245	3775	Hs.208544	NM_002245	ENSG00000135750	KCNK1	DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1	"potassium channel, subfamily K, member 1"	protein-coding
chr3.47744611.-	chr3	47744611	47744612	-	0	NA	"intron (NM_003074, intron 10 of 27)"	AluSx|SINE|Alu	-78794	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1"	protein-coding
chr18.41408414.-	chr18	41408414	41408415	-	0	NA	Intergenic	AluSx3|SINE|Alu	550799	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin IV	protein-coding
chr2.183903182.+	chr2	183903182	183903183	+	0	NA	promoter-TSS (NM_013436)	promoter-TSS (NM_013436)	47	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125	NCK-associated protein 1	protein-coding
chr3.152880045.-	chr3	152880045	152880046	-	0	NA	promoter-TSS (NM_002886)	promoter-TSS (NM_002886)	-16	NM_002886	5912	Hs.98643	NM_002886	ENSG00000181467	RAP2B	-	"RAP2B, member of RAS oncogene family"	protein-coding
chr16.3755347.+	chr16	3755347	3755348	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12251	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr20.18441244.-	chr20	18441244	18441245	-	0	NA	"intron (NM_001099407, intron 2 of 20)"	AluY|SINE|Alu	-6585	NM_001099407	55184	Hs.472225	NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2	double zinc ribbon and ankyrin repeat domains 1	protein-coding
chr14.34667877.+	chr14	34667877	34667878	+	0	NA	Intergenic	AluSx1|SINE|Alu	-247593	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl nine homolog 3 (C. elegans)	protein-coding
chr9.127615907.+	chr9	127615907	127615908	+	0	NA	"intron (NM_001276375, intron 1 of 8)"	"intron (NM_001276375, intron 1 of 8)"	211	NM_001276375	401551	Hs.343383	NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
chr11.125662052.+	chr11	125662052	125662053	+	0	NA	TTS (NM_001129883)	TTS (NM_001129883)	4046	NM_001129883	100169851	Hs.131278	NM_001129883	ENSG00000236027	PATE3	HEL-127|PATE-DJ	prostate and testis expressed 3	protein-coding
chr10.99609481.+	chr10	99609481	99609482	+	0	NA	promoter-TSS (NM_001010917)	promoter-TSS (NM_001010917)	-514	NM_001010917	401647	Hs.567524	NM_001010917		GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	"golgin A7 family, member B"	protein-coding
chrX.25544595.-	chrX	25544595	25544596	-	0	NA	Intergenic	AluSc5|SINE|Alu	510530	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
chr10.75286203.+	chr10	75286203	75286204	+	0	NA	"intron (NM_152586, intron 14 of 21)"	AluSx3|SINE|Alu	-30421	NM_001142353	5532	Hs.500067	NM_001142353	ENSG00000107758	PPP3CB	CALNA2|CALNB|CNA2|PP2Bbeta	"protein phosphatase 3, catalytic subunit, beta isozyme"	protein-coding
chr1.44412071.-	chr1	44412071	44412072	-	0	NA	promoter-TSS (NM_014652)	promoter-TSS (NM_014652)	407	NM_014652	9670	Hs.158497	XM_003846624	ENSG00000117408	IPO13	IMP13|KAP13|LGL2|RANBP13	importin 13	protein-coding
chr4.123063306.-	chr4	123063306	123063307	-	0	NA	Intergenic	AluSg7|SINE|Alu	28452	NM_015312	84162	Hs.408142	NM_015312	ENSG00000138688	KIAA1109	FSA|Tweek	KIAA1109	protein-coding
chr2.113642139.-	chr2	113642139	113642140	-	0	NA	Intergenic	AluJb|SINE|Alu	28409	NM_173203	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
chr5.171395344.+	chr5	171395344	171395345	+	0	NA	"intron (NM_012300, intron 1 of 12)"	AluY|SINE|Alu	38533	NM_012300	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
chr7.95234857.+	chr7	95234857	95234858	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8932	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	"pyruvate dehydrogenase kinase, isozyme 4"	protein-coding
chr4.186887800.+	chr4	186887800	186887801	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9930	NM_001270771	8470	Hs.655143	NM_001145670	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
chr6.1610262.+	chr6	1610262	1610263	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-419	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
chr19.48603783.+	chr19	48603783	48603784	+	0	NA	"intron (NM_001159322, intron 4 of 16)"	AluSx4|SINE|Alu	10326	NM_001159322	8605	Hs.631562	NM_001159322	ENSG00000105499	PLA2G4C	CPLA2-gamma	"phospholipase A2, group IVC (cytosolic, calcium-independent)"	protein-coding
chr16.4537733.+	chr16	4537733	4537734	+	0	NA	"intron (NM_001127204, intron 2 of 6)"	AluY|SINE|Alu	-8126	NM_001127205	3163	Hs.284279	NM_001127204	ENSG00000103415	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
chr16.30960873.+	chr16	30960873	30960874	+	0	NA	TTS (NM_001271651)	TTS (NM_001271651)	468	NM_152288	93129	Hs.460617	NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
chr11.69189572.-	chr11	69189572	69189573	-	0	NA	Intergenic	Intergenic	-127950	NM_138768	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
chr8.141552228.+	chr8	141552228	141552229	+	0	NA	"intron (NM_001164623, intron 14 of 17)"	"intron (NM_001164623, intron 14 of 17)"	30147	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
chr10.12223708.-	chr10	12223708	12223709	-	0	NA	"intron (NM_014142, intron 3 of 9)"	AluJr|SINE|Alu	14253	NM_006023	8872	Hs.412842	NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
chr16.3733188.+	chr16	3733188	3733189	+	0	NA	"intron (NM_016292, intron 4 of 17)"	"intron (NM_016292, intron 4 of 17)"	30248	NM_005223	1773	Hs.733045	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
chr1.223567007.+	chr1	223567007	223567008	+	0	NA	"exon (NM_152610, exon 1 of 1)"	"exon (NM_152610, exon 1 of 1)"	292	NM_152610	164127	Hs.192090	NM_152610	ENSG00000178395	C1orf65	RP11-76K24.1	chromosome 1 open reading frame 65	protein-coding
chr2.39267432.-	chr2	39267432	39267433	-	0	NA	"intron (NM_005633, intron 6 of 22)"	AluY|SINE|Alu	79947	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	miscRNA
chr18.67270860.-	chr18	67270860	67270861	-	0	NA	"intron (NM_152721, intron 3 of 7)"	AluY|SINE|Alu	-202576	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
chr9.8857461.-	chr9	8857461	8857462	-	0	NA	"intron (NM_002839, intron 11 of 45)"	"intron (NM_002839, intron 11 of 45)"	123515	NM_130391	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr21.43109590.+	chr21	43109590	43109591	+	0	NA	"intron (NR_024367, intron 2 of 2)"	CpG	10128	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	miscRNA
chr16.12210409.-	chr16	12210409	12210410	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139807	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chr16.12210391.-	chr16	12210391	12210392	-	0	NA	"intron (NM_032167, intron 11 of 20)"	AluSx1|SINE|Alu	-139789	NM_032167	92017	Hs.458401	NM_001009607	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
chrX.20094621.-	chrX	20094621	20094622	-	0	NA	"intron (NM_152780, intron 1 of 15)"	AluSq|SINE|Alu	-40135	NM_001168467	256714	Hs.127951	NM_001168465	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
chr19.17585872.+	chr19	17585872	17585873	+	0	NA	"intron (NM_198580, intron 1 of 11)"	AluSx1|SINE|Alu	4572	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP1	"solute carrier family 27 (fatty acid transporter), member 1"	protein-coding
chr18.77627582.-	chr18	77627582	77627583	-	0	NA	"intron (NM_012283, intron 1 of 1)"	"intron (NM_012283, intron 1 of 1)"	-3914	NM_012283	26251	Hs.247905	NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	"potassium voltage-gated channel, subfamily G, member 2"	protein-coding
chr19.4612707.-	chr19	4612707	4612708	-	0	NA	Intergenic	AluY|SINE|Alu	26820	NM_152362	126282	Hs.465643	NM_001167942	ENSG00000185361	TNFAIP8L1	TIPE1	"tumor necrosis factor, alpha-induced protein 8-like 1"	protein-coding
chr1.39570721.+	chr1	39570721	39570722	+	0	NA	"intron (NM_012090, intron 3 of 94)"	CpG	23632	NM_012090	23499	Hs.692278	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
chr7.1004359.+	chr7	1004359	1004360	+	0	NA	TTS (NM_001031617)	TTS (NM_001031617)	-10070	NM_006869	11033	Hs.602573	NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
chr1.27293953.+	chr1	27293953	27293954	+	0	NA	Intergenic	AluSx|SINE|Alu	-7052	NM_152365	126695	Hs.188881	NM_152365	ENSG00000175707	C1orf172	RP11-344H11.3	chromosome 1 open reading frame 172	protein-coding
chr13.21644941.+	chr13	21644941	21644942	+	0	NA	Intergenic	AluSx|SINE|Alu	-9219	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	"LATS, large tumor suppressor, homolog 2 (Drosophila)"	protein-coding
chr6.5279361.-	chr6	5279361	5279362	-	0	NA	"intron (NM_006567, intron 1 of 6)"	AluSc8|SINE|Alu	-17777	NM_006567	10667	Hs.484547	NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|dJ520B18.2	"phenylalanyl-tRNA synthetase 2, mitochondrial"	protein-coding
chr13.49426618.+	chr13	49426618	49426619	+	0	NA	Intergenic	AluSp|SINE|Alu	-123430	NM_001079673	22862	Hs.508010	NM_001079673	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
chr3.74440930.-	chr3	74440930	74440931	-	0	NA	"intron (NM_020872, intron 4 of 21)"	AluSx3|SINE|Alu	-129413	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
chr19.10804458.-	chr19	10804458	10804459	-	0	NA	Intergenic	AluSx|SINE|Alu	7654	NM_031209	81890	Hs.631638	NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase 1	protein-coding
chr1.40953688.+	chr1	40953688	40953689	+	0	NA	"intron (NM_198494, intron 3 of 5)"	AluSx|SINE|Alu	10386	NM_198494	339559	Hs.434385	NM_198494	ENSG00000187815	ZFP69	RP11-656D10.2|ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
chr17.57336736.-	chr17	57336736	57336737	-	0	NA	"intron (NM_001165993, intron 6 of 9)"	AluY|SINE|Alu	-38908	NM_001165994	284161	Hs.631744	NM_001165993	ENSG00000153982	GDPD1	GDE4	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
chr12.120537774.-	chr12	120537774	120537775	-	0	NA	"intron (NM_001167606, intron 3 of 4)"	"intron (NM_001167606, intron 3 of 4)"	-16869	NM_001167606	11021	Hs.524788	NM_001167606	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	"RAB35, member RAS oncogene family"	protein-coding
chr16.3755321.+	chr16	3755321	3755322	+	0	NA	"intron (NM_016292, intron 1 of 17)"	AluY|SINE|Alu	12277	NM_016292	10131	Hs.30345	NM_001272049	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
chr18.63211112.-	chr18	63211112	63211113	-	0	NA	Intergenic	AluY|SINE|Alu	206376	NM_033646	1005	Hs.657522	NM_004361	ENSG00000081138	CDH7	CDH7L1	"cadherin 7, type 2"	protein-coding
chr14.80915488.+	chr14	80915488	80915489	+	0	NA	"intron (NR_038355, intron 8 of 8)"	AluY|SINE|Alu	-218091	NM_000793	1734	Hs.732170	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	"deiodinase, iodothyronine, type II"	protein-coding
chrX.88129132.-	chrX	88129132	88129133	-	0	NA	Intergenic	AluY|SINE|Alu	-126906	NM_001184771	53336	Hs.458292	NM_001184771	ENSG00000147183	CPXCR1	CT77	"CPX chromosome region, candidate 1"	protein-coding
chr8.12476343.-	chr8	12476343	12476344	-	0	NA	"intron (NR_047662, intron 2 of 8)"	AluY|SINE|Alu	-46777	NR_047662	729732	Hs.696467	XR_159504		LOC729732	-	uncharacterized LOC729732	miscRNA
chr14.77927230.-	chr14	77927230	77927231	-	0	NA	"intron (NM_012111, intron 2 of 8)"	AluSc8|SINE|Alu	-2857	NM_012111	10598	Hs.204041	NM_012111	ENSG00000100591	AHSA1	AHA1|C14orf3|p38	"AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)"	protein-coding
chr16.79553770.+	chr16	79553770	79553771	+	0	NA	Intergenic	Intergenic	80852	NM_005360	4094	Hs.134859	NM_001031804	ENSG00000178573	MAF	CCA4|c-MAF	v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)	protein-coding
chr19.1136028.-	chr19	1136028	1136029	-	0	NA	"intron (NM_014963, intron 4 of 31)"	MLT1C|LTR|ERVL-MaLR	3755	NM_001100122	22904	Hs.408708	NM_001100122	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
chr2.48079327.+	chr2	48079327	48079328	+	0	NA	"intron (NM_001190274, intron 1 of 22)"	AluSx1|SINE|Alu	36531	NM_025133	80204	Hs.352677	NM_001190274	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
chr2.10424813.+	chr2	10424813	10424814	+	0	NA	Intergenic	Intergenic	-18217	NM_002149	3241	Hs.741268	NM_001258357	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
chrX.53111556.-	chrX	53111556	53111557	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-14	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr6.88090605.+	chr6	88090605	88090606	+	0	NA	Intergenic	AluJb|SINE|Alu	-16237	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	miscRNA
chr15.78891302.-	chr15	78891302	78891303	-	0	NA	"intron (NR_046313, intron 5 of 7)"	AluSx|SINE|Alu	-22335	NM_001166694	1136	Hs.89605	NM_000743	ENSG00000080644	CHRNA3	LNCR2|NACHRA3|PAOD2	"cholinergic receptor, nicotinic, alpha 3 (neuronal)"	protein-coding
chr20.36793597.-	chr20	36793597	36793598	-	0	NA	"exon (NM_004613, exon 1 of 13)"	"exon (NM_004613, exon 1 of 13)"	-103	NM_004613	7052	Hs.517033	NM_004613	ENSG00000198959	TGM2	G-ALPHA-h|GNAH|TG2|TGC	"transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)"	protein-coding
chr19.23474392.+	chr19	23474392	23474393	+	0	NA	Intergenic	AluSx|SINE|Alu	-41220	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr9.138663331.-	chr9	138663331	138663332	-	0	NA	"intron (NM_001272003, intron 17 of 30)"	"intron (NM_001272003, intron 17 of 30)"	-69300	NM_020822	57582	Hs.104950	NM_001272003	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	"potassium channel, subfamily T, member 1"	protein-coding
chr11.1266539.-	chr11	1266539	1266540	-	0	NA	"exon (NM_002458, exon 31 of 49)"	"exon (NM_002458, exon 31 of 49)"	-22244	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	"mucin 5B, oligomeric mucus/gel-forming"	protein-coding
chr1.54953521.-	chr1	54953521	54953522	-	0	NA	Intergenic	Intergenic	60286	NM_015547	26027	Hs.234786	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
chr18.34669435.-	chr18	34669435	34669436	-	0	NA	"intron (NM_020776, intron 7 of 9)"	AluSx|SINE|Alu	260256	NM_015476	25941	Hs.436636	NM_001271949	ENSG00000134779	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
chr21.46439077.-	chr21	46439077	46439078	-	0	NA	Intergenic	CpG	14435	NR_024089	378825	Hs.534828	NR_024089	ENSG00000224930	LINC00162	C21orf113|NCRNA00162|NLC1-C|NLC1C|PRED74	long intergenic non-protein coding RNA 162	miscRNA
chr3.32620426.+	chr3	32620426	32620427	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8060	NM_016141	51143	Hs.529495	NM_016141	ENSG00000144635	DYNC1LI1	DNCLI1|LIC1	"dynein, cytoplasmic 1, light intermediate chain 1"	protein-coding
chr10.103852107.+	chr10	103852107	103852108	+	0	NA	Intergenic	AluSc|SINE|Alu	22616	NM_003893	8861	Hs.454418	NM_001113407	ENSG00000198728	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
chr1.41976636.+	chr1	41976636	41976637	+	0	NA	"exon (NM_024503, exon 9 of 9)"	"exon (NM_024503, exon 9 of 9)"	-26292	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET2|PPET2	endothelin 2	protein-coding
chr3.44519035.+	chr3	44519035	44519036	+	0	NA	"intron (NM_181489, intron 1 of 7)"	CpG	127	NM_181489	353274	Hs.250481	NM_181489	ENSG00000185219	ZNF445	ZKSCAN15|ZNF168|ZSCAN47	zinc finger protein 445	protein-coding
chr17.4435097.+	chr17	4435097	4435098	+	0	NA	"intron (NM_001124758, intron 5 of 12)"	"intron (NM_001124758, intron 5 of 12)"	23584	NM_014520	10514	Hs.701718	NM_001105538	ENSG00000132382	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
chr9.137288457.-	chr9	137288457	137288458	-	0	NA	"intron (NM_002957, intron 1 of 9)"	"intron (NM_002957, intron 1 of 9)"	-17200	NR_039816	100616236		NR_039816		MIR4669	-	microRNA 4669	miscRNA
chrX.53111572.-	chrX	53111572	53111573	-	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-30	NM_022117	64061	Hs.592916	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
chr2.242433457.-	chr2	242433457	242433458	-	0	NA	TTS (NM_006374)	TTS (NM_006374)	-14318	NM_001271978	10494	Hs.516807	NM_001271977	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
chr7.45775918.-	chr7	45775918	45775919	-	0	NA	"intron (NR_024271, intron 9 of 12)"	AluYa5|SINE|Alu	-32699	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
chrX.53930565.+	chrX	53930565	53930566	+	0	NA	Intergenic	AluSq2|SINE|Alu	139062	NM_001184898	23133	Hs.731707	NM_001184896	ENSG00000172943	PHF8	JHDM1F|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
chr20.1317833.+	chr20	1317833	1317834	+	0	NA	"intron (NR_040047, intron 1 of 2)"	"intron (NR_040047, intron 1 of 2)"	-7954	NM_080489	27111	Hs.657015	NM_001199784	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
chr11.64641443.-	chr11	64641443	64641444	-	0	NA	"intron (NM_006795, intron 2 of 4)"	AluY|SINE|Alu	-4748	NM_006795	10938	Hs.523774	NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH-domain containing 1	protein-coding
chr7.99630212.+	chr7	99630212	99630213	+	0	NA	"intron (NM_003439, intron 5 of 5)"	AluSx|SINE|Alu	16993	NM_003439	7586	Hs.615360	NM_003439		ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
chr9.94666416.-	chr9	94666416	94666417	-	0	NA	"intron (NM_004560, intron 1 of 8)"	AluSx|SINE|Alu	-46028	NM_004560	4920	Hs.644776	NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
chrX.39680354.-	chrX	39680354	39680355	-	0	NA	Intergenic	CpG	-276365	NM_017745	54880	Hs.659681	NM_001123383	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
chr8.6644926.+	chr8	6644926	6644927	+	0	NA	Intergenic	AluY|SINE|Alu	-42165	NR_039807	100616372		NR_039807		MIR4659B	-	microRNA 4659b	miscRNA
chr19.23474353.-	chr19	23474353	23474354	-	0	NA	Intergenic	AluSx|SINE|Alu	41181	NR_045525	440519	Hs.675814	NR_045525		ZNF724P	-	"zinc finger protein 724, pseudogene"	pseudo
chr7.23478929.-	chr7	23478929	23478930	-	0	NA	"intron (NM_006547, intron 2 of 14)"	AluYf4|SINE|Alu	-31066	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
chr6.105414623.-	chr6	105414623	105414624	-	0	NA	"intron (NM_001004317, intron 2 of 3)"	AluY|SINE|Alu	-9700	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B (C. elegans)	protein-coding
chr19.1252678.+	chr19	1252678	1252679	+	0	NA	"intron (NM_177401, intron 4 of 7)"	"intron (NM_177401, intron 4 of 7)"	4126	NM_177401	90007	Hs.465529	NM_177401	ENSG00000167470	MIDN	-	midnolin	protein-coding
chr1.80177679.+	chr1	80177679	80177680	+	0	NA	Intergenic	AluSx|SINE|Alu	-705184	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	"EGF, latrophilin and seven transmembrane domain containing 1"	protein-coding
chr1.184645043.-	chr1	184645043	184645044	-	0	NA	Intergenic	L1MA5A|LINE|L1	-78998	NM_025191	80267	Hs.523811	NM_025191	ENSG00000116406	EDEM3	C1orf22	"ER degradation enhancer, mannosidase alpha-like 3"	protein-coding
chr2.10130486.+	chr2	10130486	10130487	+	0	NA	"intron (NM_198182, intron 9 of 15)"	AluSx1|SINE|Alu	38694	NM_198182	29841	Hs.418493	NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
chr9.135013596.+	chr9	135013596	135013597	+	0	NA	Intergenic	AluSz|SINE|Alu	-23738	NM_032536	84628	Hs.163642	NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
chr14.76577629.+	chr14	76577629	76577630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40630	NM_017926	55668	Hs.410231	NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G patch domain containing 2-like	protein-coding
chr9.10786965.-	chr9	10786965	10786966	-	0	NA	Intergenic	AluYc3|SINE|Alu	174242	NM_002839	5789	Hs.446083	NM_001040712	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	"protein tyrosine phosphatase, receptor type, D"	protein-coding
chr16.783722.+	chr16	783722	783723	+	0	NA	"intron (NM_022493, intron 6 of 10)"	"intron (NM_022493, intron 6 of 10)"	6456	NM_032304	84264	Hs.124015	NM_207112	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase-like	protein-coding
chr22.50876267.-	chr22	50876267	50876268	-	0	NA	"intron (NM_001242898, intron 16 of 23)"	"intron (NM_001242898, intron 16 of 23)"	-37197	NM_002972	6305	Hs.589924	NM_002972		SBF1	DENND7A|MTMR5	SET binding factor 1	protein-coding
chr7.2943510.+	chr7	2943510	2943511	+	0	NA	Intergenic	Intergenic	-59551	NM_007353	2768	Hs.487341	NM_007353	ENSG00000146535	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
chr13.35281589.-	chr13	35281589	35281590	-	0	NA	Intergenic	AluY|SINE|Alu	66767	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	miscRNA
chr17.79974474.+	chr17	79974474	79974475	+	0	NA	"intron (NR_045351, intron 12 of 14)"	"intron (NR_045351, intron 12 of 14)"	6311	NM_144998	201254	Hs.37616	NM_001271006	ENSG00000169689	STRA13	CENP-X|FAAP10|MHF2	stimulated by retinoic acid 13	protein-coding
chr2.213546689.-	chr2	213546689	213546690	-	0	NA	Intergenic	AluSc8|SINE|Alu	143337	NM_005235	2066	Hs.390729	NM_001042599	ENSG00000178568	ERBB4	HER4|p180erbB4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chr1.52195704.-	chr1	52195704	52195705	-	0	NA	"5' UTR (NM_148904, exon 1 of 20)"	"5' UTR (NM_148904, exon 1 of 20)"	-218	NM_148905	114883	Hs.738830	NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein-like 9	protein-coding
chr5.10563644.-	chr5	10563644	10563645	-	0	NA	promoter-TSS (NM_001164440)	promoter-TSS (NM_001164440)	791	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
chr5.25535460.+	chr5	25535460	25535461	+	0	NA	Intergenic	AluY|SINE|Alu	-694768	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	miscRNA
chr17.78559342.-	chr17	78559342	78559343	-	0	NA	"intron (NM_020761, intron 1 of 33)"	"intron (NM_020761, intron 1 of 33)"	-40717	NM_001163034	57521	Hs.133044	NM_001163034	ENSG00000141564	RPTOR	KOG1|Mip1	"regulatory associated protein of MTOR, complex 1"	protein-coding
chr2.47660685.-	chr2	47660685	47660686	-	0	NA	"intron (NM_001258281, intron 8 of 16)"	SVA_D|Other|Other	-30479	NM_001258281	4436	Hs.597656	NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2	"mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)"	protein-coding
chr16.88772904.+	chr16	88772904	88772905	+	0	NA	promoter-TSS (NM_001012762)	promoter-TSS (NM_001012762)	13	NM_001012762	348180	Hs.592074	NM_001012759	ENSG00000174177	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
chrX.86721020.-	chrX	86721020	86721021	-	0	NA	Intergenic	SVA_C|Other|Other	51695	NM_019117	56062	Hs.49075	NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
chrX.20694386.+	chrX	20694386	20694387	+	0	NA	Intergenic	AluY|SINE|Alu	-409636	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	"ribosomal protein S6 kinase, 90kDa, polypeptide 3"	protein-coding
chr16.49892638.+	chr16	49892638	49892639	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-808	NM_001271620	23090	Hs.744482	NM_001271620	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
chr19.2491353.+	chr19	2491353	2491354	+	0	NA	Intergenic	Intergenic	15230	NM_015675	4616	Hs.110571	NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	"growth arrest and DNA-damage-inducible, beta"	protein-coding
chr19.9311339.+	chr19	9311339	9311340	+	0	NA	Intergenic	AluSc8|SINE|Alu	14208	NM_001005191	125958	Hs.446910	NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	"olfactory receptor, family 7, subfamily D, member 4"	protein-coding
chr10.75069572.-	chr10	75069572	75069573	-	0	NA	"intron (NM_145170, intron 13 of 27)"	AluSx|SINE|Alu	-49045	NM_145170	118491	Hs.720588	NM_145170	ENSG00000156042	TTC18	-	tetratricopeptide repeat domain 18	protein-coding
chr22.17719093.-	chr22	17719093	17719094	-	0	NA	Intergenic	AluSg|SINE|Alu	28314	NM_017424	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL	"cat eye syndrome chromosome region, candidate 1"	protein-coding
chr16.71414330.+	chr16	71414330	71414331	+	0	NA	"intron (NR_027910, intron 4 of 9)"	AluSp|SINE|Alu	21714	NM_007088	794	Hs.106857	NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding